Citrus Sinensis ID: 008748
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 555 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VZV7 | 612 | Probable methyltransferas | yes | no | 0.940 | 0.852 | 0.780 | 0.0 | |
| Q8H118 | 611 | Probable methyltransferas | no | no | 0.938 | 0.852 | 0.651 | 0.0 | |
| Q93YV7 | 608 | Probable methyltransferas | no | no | 0.935 | 0.853 | 0.647 | 0.0 | |
| Q940J9 | 623 | Probable methyltransferas | no | no | 0.942 | 0.839 | 0.654 | 0.0 | |
| Q9LZA4 | 600 | Probable methyltransferas | no | no | 0.933 | 0.863 | 0.460 | 1e-135 | |
| O22285 | 694 | Probable methyltransferas | no | no | 0.861 | 0.688 | 0.472 | 1e-133 | |
| Q84TJ0 | 591 | Probable methyltransferas | no | no | 0.904 | 0.849 | 0.468 | 1e-133 | |
| Q9FG39 | 682 | Probable methyltransferas | no | no | 0.859 | 0.699 | 0.460 | 1e-132 | |
| Q94KE1 | 655 | Probable methyltransferas | no | no | 0.897 | 0.760 | 0.441 | 1e-130 | |
| Q9C884 | 639 | Probable methyltransferas | no | no | 0.866 | 0.752 | 0.452 | 1e-125 |
| >sp|Q8VZV7|PMT9_ARATH Probable methyltransferase PMT9 OS=Arabidopsis thaliana GN=At5g14430 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/524 (78%), Positives = 459/524 (87%), Gaps = 2/524 (0%)
Query: 25 CSKIKSSILKCPKASPNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVR 84
C S ++ C NL YQLKLK NLSLMEHYE HCPP ERR+NCLVPPP GYKIP+R
Sbjct: 83 CDSRHSELIPC--LDRNLHYQLKLKLNLSLMEHYEHHCPPSERRFNCLVPPPVGYKIPLR 140
Query: 85 WPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLK 144
WP SRDEVWKANIPHTHLA+EKSDQ+WMVVNG+KINFPGGGTHFH+GADKYI++LA+MLK
Sbjct: 141 WPVSRDEVWKANIPHTHLAQEKSDQNWMVVNGDKINFPGGGTHFHNGADKYIVSLAQMLK 200
Query: 145 FPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPST 204
FP DKLNNGG+IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVH+NQIQFALERGIPST
Sbjct: 201 FPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHQNQIQFALERGIPST 260
Query: 205 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD 264
LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD
Sbjct: 261 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD 320
Query: 265 PENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDV 324
PENR+I NAM+DL K MCWK+V+K+DQ+VIW KPISNSCYLKR PG PPLC S DDPD
Sbjct: 321 PENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKPISNSCYLKRDPGVLPPLCPSGDDPDA 380
Query: 325 TWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRV 384
TWNV MKACISPYS +MH E+ +GLVPWP RLTAPPPRLEE+GVT E+F ED W++RV
Sbjct: 381 TWNVSMKACISPYSVRMHKERWSGLVPWPRRLTAPPPRLEEIGVTPEQFREDTETWRLRV 440
Query: 385 VDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGL 444
++YWK +K + QKN+ RNVMDM+SNLGGFAAAL DKDVWVMNV PV+ S R+KIIYDRGL
Sbjct: 441 IEYWKLLKPMVQKNSIRNVMDMSSNLGGFAAALNDKDVWVMNVMPVQSSPRMKIIYDRGL 500
Query: 445 IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 504
IG HDWCE+F TYPRT+DL+HAW F+E + RGCSFEDLLIEMDR+LRPEGFVIIRD +
Sbjct: 501 IGATHDWCEAFDTYPRTFDLIHAWNTFTETQARGCSFEDLLIEMDRILRPEGFVIIRDTT 560
Query: 505 SIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLW 548
I+YI+K++T LKWD W +E P+ D LS+ +E VLIA+KKLW
Sbjct: 561 DNISYIKKYLTLLKWDKWSTETTPKGDPLSTKDEIVLIARKKLW 604
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8H118|PMT1_ARATH Probable methyltransferase PMT1 OS=Arabidopsis thaliana GN=At3g23300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/525 (65%), Positives = 415/525 (79%), Gaps = 4/525 (0%)
Query: 24 TCSKIKSSILKCPKASPNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPV 83
C S ++ C NLIYQ++LK +LSLMEHYERHCPPPERR+NCL+PPP GYKIP+
Sbjct: 81 VCDDRHSELIPC--LDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPPGYKIPI 138
Query: 84 RWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARML 143
+WP SRDEVWK NIPHTHLA EKSDQ+WMVV GEKINFPGGGTHFH GADKYI ++A ML
Sbjct: 139 KWPKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGEKINFPGGGTHFHYGADKYIASMANML 198
Query: 144 KFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPS 203
FP++ LNNGG +R LDVGCGVASFG YLL+ +I+ MSLAPNDVH+NQIQFALERGIP+
Sbjct: 199 NFPNNVLNNGGRLRTFLDVGCGVASFGGYLLASEIMTMSLAPNDVHQNQIQFALERGIPA 258
Query: 204 TLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH 263
LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDR+LRPGGYF YSSPEAYA
Sbjct: 259 YLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQ 318
Query: 264 DPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPD 323
D E+ RIW M L+ MCW I +K++QTVIW KP++N CYL R PG++PPLC+SD DPD
Sbjct: 319 DEEDLRIWREMSALVGRMCWTIAAKRNQTVIWQKPLTNDCYLGREPGTQPPLCNSDSDPD 378
Query: 324 VTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVR 383
+ V M+ACI+ YS H KG+GL PWPARLT+PPPRL + G +T+ F +D W+ R
Sbjct: 379 AVYGVNMEACITQYSDHDHKTKGSGLAPWPARLTSPPPRLADFGYSTDIFEKDTETWRQR 438
Query: 384 VVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRG 443
V YW + Q +T RN+MDM +++G FAAALK+KDVWVMNV P LK+IYDRG
Sbjct: 439 VDTYWDLLSPKIQSDTVRNIMDMKASMGSFAAALKEKDVWVMNVVPEDGPNTLKLIYDRG 498
Query: 444 LIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503
L+G VH WCE+FSTYPRTYDLLHAW + S+I++RGCS EDLL+EMDR+LRP GF++IRDK
Sbjct: 499 LMGAVHSWCEAFSTYPRTYDLLHAWDIISDIKKRGCSAEDLLLEMDRILRPSGFILIRDK 558
Query: 504 SSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLW 548
S+++ ++K++ AL W+ E + ++ S+ +LI +KKLW
Sbjct: 559 QSVVDLVKKYLKALHWEA--VETKTASESDQDSDNVILIVQKKLW 601
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q93YV7|PMT3_ARATH Probable methyltransferase PMT3 OS=Arabidopsis thaliana GN=At4g14360 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/527 (64%), Positives = 418/527 (79%), Gaps = 8/527 (1%)
Query: 24 TCSKIKSSILKCPKASPNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPV 83
C S ++ C NLIYQ++LK +LSLMEHYERHCPPPERR+NCL+PPP GYK+P+
Sbjct: 78 VCDDRHSELIPC--LDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPNGYKVPI 135
Query: 84 RWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARML 143
+WP SRDEVWK NIPHTHLA EKSDQ+WMVV G+KINFPGGGTHFH GADKYI ++A ML
Sbjct: 136 KWPKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGDKINFPGGGTHFHYGADKYIASMANML 195
Query: 144 KFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPS 203
+P++ LNNGG +R V DVGCGVASFG YLLS DI+ MSLAPNDVH+NQIQFALERGIP+
Sbjct: 196 NYPNNVLNNGGRLRTVFDVGCGVASFGGYLLSSDILTMSLAPNDVHQNQIQFALERGIPA 255
Query: 204 TLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH 263
+LGVLGTKRLPYPSRSFEL+HCSRCRIDWLQRDGILLLELDR+LRPGGYF YSSPEAYA
Sbjct: 256 SLGVLGTKRLPYPSRSFELSHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQ 315
Query: 264 DPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPD 323
D E+ RIW M L++ MCWKI +K++QTVIW KP++N CYL+R PG++PPLC SD+DPD
Sbjct: 316 DEEDLRIWREMSALVERMCWKIAAKRNQTVIWQKPLTNDCYLEREPGTQPPLCRSDNDPD 375
Query: 324 VTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVR 383
W V M+ACI+ YS H KG+GL PWPARLT+PPPRL + G +T F +D +W+ R
Sbjct: 376 AVWGVNMEACITSYSDHDHKTKGSGLAPWPARLTSPPPRLADFGYSTGMFEKDTELWRQR 435
Query: 384 VVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRG 443
V YW + + +T RN+MDM +++G FAAALK+KDVWVMNV P LK+IYDRG
Sbjct: 436 VDTYWDLLSPRIESDTVRNIMDMKASMGSFAAALKEKDVWVMNVVPEDGPNTLKLIYDRG 495
Query: 444 LIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503
L+G VH WCE+FSTYPRTYDLLHAW + S+I+++GCS DLL+EMDR+LRP GF+IIRDK
Sbjct: 496 LMGAVHSWCEAFSTYPRTYDLLHAWDIISDIKKKGCSEVDLLLEMDRILRPSGFIIIRDK 555
Query: 504 SSIINYIRKFITALKWDGWLSEVEPRIDALSSSEER--VLIAKKKLW 548
++++++K++ AL W+ EV + D+ S + V I +KKLW
Sbjct: 556 QRVVDFVKKYLKALHWE----EVGTKTDSDSDQDSDNVVFIVQKKLW 598
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q940J9|PMT8_ARATH Probable methyltransferase PMT8 OS=Arabidopsis thaliana GN=At1g04430 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/530 (65%), Positives = 414/530 (78%), Gaps = 7/530 (1%)
Query: 24 TCSKIKSSILKCPKASPNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPV 83
C S I+ C N IYQ++LK +LSLMEHYERHCPPPERR+NCL+PPP GYK+P+
Sbjct: 86 VCDDRHSEIIPC--LDRNFIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPSGYKVPI 143
Query: 84 RWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARML 143
+WP SRDEVWKANIPHTHLA+EKSDQ+WMV GEKI+FPGGGTHFH GADKYI ++A ML
Sbjct: 144 KWPKSRDEVWKANIPHTHLAKEKSDQNWMVEKGEKISFPGGGTHFHYGADKYIASIANML 203
Query: 144 KFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPS 203
F +D LN+ G +R VLDVGCGVASFGAYLL+ DI+ MSLAPNDVH+NQIQFALERGIP+
Sbjct: 204 NFSNDVLNDEGRLRTVLDVGCGVASFGAYLLASDIMTMSLAPNDVHQNQIQFALERGIPA 263
Query: 204 TLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH 263
LGVLGTKRLPYPSRSFE AHCSRCRIDWLQRDG+LLLELDR+LRPGGYF YSSPEAYA
Sbjct: 264 YLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGLLLLELDRVLRPGGYFAYSSPEAYAQ 323
Query: 264 DPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPD 323
D EN +IW M L++ MCW+I K++QTV+W KP+SN CYL+R PG++PPLC SD DPD
Sbjct: 324 DEENLKIWKEMSALVERMCWRIAVKRNQTVVWQKPLSNDCYLEREPGTQPPLCRSDADPD 383
Query: 324 VTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVR 383
V M+ACI+PYS H KG+GL PWPARLT+ PPRL + G +T+ F +D +W+ +
Sbjct: 384 AVAGVSMEACITPYSKHDHKTKGSGLAPWPARLTSSPPRLADFGYSTDMFEKDTELWKQQ 443
Query: 384 VVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRG 443
V YW M + + NT RN+MDM +++G FAAALKDKDVWVMNV LK+IYDRG
Sbjct: 444 VDSYWNLMSSKVKSNTVRNIMDMKAHMGSFAAALKDKDVWVMNVVSPDGPNTLKLIYDRG 503
Query: 444 LIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503
LIGT H+WCE+FSTYPRTYDLLHAW +FS+I+ +GCS EDLLIEMDR+LRP GFVIIRDK
Sbjct: 504 LIGTNHNWCEAFSTYPRTYDLLHAWSIFSDIKSKGCSAEDLLIEMDRILRPTGFVIIRDK 563
Query: 504 SSIINYIRKFITALKWDGWLSE---VEPRIDALSSSEER--VLIAKKKLW 548
S++ I+K++ AL W+ SE +D S E V I +KKLW
Sbjct: 564 QSVVESIKKYLQALHWETVASEKVNTSSELDQDSEDGENNVVFIVQKKLW 613
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LZA4|PMT7_ARATH Probable methyltransferase PMT7 OS=Arabidopsis thaliana GN=At5g04060 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 481 bits (1238), Expect = e-135, Method: Compositional matrix adjust.
Identities = 247/536 (46%), Positives = 332/536 (61%), Gaps = 18/536 (3%)
Query: 19 TAISMTCSKIKSSILKCPKASP--NLIYQLKLKP--NLSLMEHYERHCPPPERRYNCLVP 74
T++S+ S + LK + P N+ Y +L P NLS E ERHCPP E+R CLVP
Sbjct: 74 TSVSIPESGVNVCPLKFNEYIPCHNVTYVQQLLPSLNLSRREELERHCPPLEQRLFCLVP 133
Query: 75 PPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADK 134
PPK YKIP+RWP SRD VW++N+ HTHLAE K Q+W+ G+ FPGGGTHF GA +
Sbjct: 134 PPKDYKIPIRWPTSRDYVWRSNVNHTHLAEVKGGQNWVHEQGQLWWFPGGGTHFKHGAPE 193
Query: 135 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQ 194
YI L M + L + G + VLDVGCGVASF AYLL I MS AP D HENQIQ
Sbjct: 194 YIQRLGNMTTNETGDLLSAG-VEQVLDVGCGVASFAAYLLPLGIKTMSFAPKDGHENQIQ 252
Query: 195 FALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV 254
FALERGI + + + TK++PYP+ SF++ HCSRCR+DW + DG+L+ E++RLLRP GYFV
Sbjct: 253 FALERGIRAMISAIATKQMPYPAASFDMVHCSRCRVDWHENDGVLMKEVNRLLRPNGYFV 312
Query: 255 YSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPP 314
YS+P AY D + IW+ + +L +MCWK++S+K QT IW K +C K
Sbjct: 313 YSAPPAYRKDKDFPVIWDKLVNLTSAMCWKLISRKVQTAIWVKEDDEACLRKNAELELIT 372
Query: 315 LCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFH 374
+C +D +W V ++ C+ ++ +K + L RL++ P L E G++ +EF
Sbjct: 373 ICGVEDVSKASWKVPLRDCVD--ISENRQQKPSSLTD---RLSSYPTSLREKGISEDEFT 427
Query: 375 EDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSA 434
D W+ +V YW+ M K RNVMD N+ +GGFAAA+ +WVMNV P M+
Sbjct: 428 LDTNFWREQVNQYWELMN--VNKTEVRNVMDTNAFIGGFAAAMNSYPLWVMNVVPATMND 485
Query: 435 RLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFS--EIEERGCSFEDLLIEMDRML 492
L IY RGL G HDWCE FSTYPRTYDLLHA +F+ +I GC ED+++EMDR++
Sbjct: 486 TLSGIYQRGLTGAYHDWCEPFSTYPRTYDLLHADHLFTHYKIYGEGCLLEDIMLEMDRII 545
Query: 493 RPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLW 548
RP+GF+IIRD+ SI++ +R W+ E++ + E VL +KK W
Sbjct: 546 RPQGFIIIRDEESIVSRVRDLAPKFLWEVEAHELQDKY----KKTETVLFCRKKFW 597
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O22285|PMTB_ARATH Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 477 bits (1227), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/499 (47%), Positives = 313/499 (62%), Gaps = 21/499 (4%)
Query: 56 EHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVN 115
E +ERHCP + NCLVPPPKGY+ P+ WP SRDEVW +N+PHT L E+K Q+W+ +
Sbjct: 207 ERFERHCPEKGKGLNCLVPPPKGYRQPIPWPKSRDEVWFSNVPHTRLVEDKGGQNWISRD 266
Query: 116 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS 175
K FPGGGT F GAD+Y+ +++M+ + G +IR +DVGCGVASFGAYLLS
Sbjct: 267 KNKFKFPGGGTQFIHGADQYLDQMSKMVS----DITFGKHIRVAMDVGCGVASFGAYLLS 322
Query: 176 HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 235
D++ MS+AP DVHENQIQFALERG+P+ T+RL YPS++F+L HCSRCRI+W +
Sbjct: 323 RDVMTMSVAPKDVHENQIQFALERGVPAMAAAFATRRLLYPSQAFDLIHCSRCRINWTRD 382
Query: 236 DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIW 295
DGILLLE++R+LR GGYF +++ Y H+P W M +L S+CWK+V K+ IW
Sbjct: 383 DGILLLEINRMLRAGGYFAWAAQPVYKHEPALEEQWTEMLNLTISLCWKLVKKEGYVAIW 442
Query: 296 AKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPAR 355
KP +N CYL R G++PPLC DDPD W +K CIS K + G + WPAR
Sbjct: 443 QKPFNNDCYLSREAGTKPPLCDESDDPDNVWYTNLKPCISRIPEKGY---GGNVPLWPAR 499
Query: 356 LTAPPPRLEEVGVTT-----EEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNL 410
L PP RL+ + + E F + W + Y + +K +K RNV+DM +
Sbjct: 500 LHTPPDRLQTIKFDSYIARKELFKAESKYWNEIIGGYVRALKW--KKMKLRNVLDMRAGF 557
Query: 411 GGFAAALKDK--DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAW 468
GGFAAAL D D WV++V PV L +IYDRGL+G +HDWCE F TYPRTYD LHA
Sbjct: 558 GGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDFLHAS 617
Query: 469 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEP 528
+FS IE + C +L+EMDR+LRP G IRD +++ I++ A+ W L +
Sbjct: 618 GLFS-IERKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDEIQEITKAMGWHTSLRDTSE 676
Query: 529 RIDALSSSEERVLIAKKKL 547
A R+L +K+L
Sbjct: 677 GPHA----SYRILTCEKRL 691
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q84TJ0|PMT6_ARATH Probable methyltransferase PMT6 OS=Arabidopsis thaliana GN=At3g10200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 476 bits (1225), Expect = e-133, Method: Compositional matrix adjust.
Identities = 242/516 (46%), Positives = 322/516 (62%), Gaps = 14/516 (2%)
Query: 36 PKASPNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKA 95
P + ++QL NLS E ERHCPP E R CLVPPP YKIP+RWP SRD VW++
Sbjct: 84 PCHNVTYVHQLLPSLNLSRREDLERHCPPLEHRLFCLVPPPNDYKIPIRWPTSRDYVWRS 143
Query: 96 NIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGN 155
N+ HTHLA+ K Q+W+ G+ FPGGGTHF GA +YI L M+ + L + G
Sbjct: 144 NVNHTHLAQVKGGQNWVHEQGQFWWFPGGGTHFKHGAAEYIQRLGNMMTNETGDLRSAGV 203
Query: 156 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY 215
++ VLDVGCGVASF AYLL I +S AP D HENQIQFALERGI + + + TK+LPY
Sbjct: 204 VQ-VLDVGCGVASFAAYLLPLGIQTISFAPKDGHENQIQFALERGIGAMISAVATKQLPY 262
Query: 216 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMY 275
P+ SFE+ HCSRCR+DW DGILL E+ RLLRP G+FVYSSP AY D E IW+ +
Sbjct: 263 PAASFEMVHCSRCRVDWHTNDGILLKEVHRLLRPNGFFVYSSPPAYRKDKEYPMIWDKLV 322
Query: 276 DLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACIS 335
+L +MCWK++S+K QT IW K C ++ LC +D +W V +K C+
Sbjct: 323 NLTSAMCWKLISRKVQTAIWIKEEKEVCLKQKAELKLISLCDVEDVLKPSWKVPLKDCVQ 382
Query: 336 PYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVA 395
+ E+ + L RL+A P L ++G++ +E+ D W+ +V YW+ M
Sbjct: 383 --ISGQTEERPSSLA---ERLSAYPATLRKIGISEDEYTSDTVFWREQVNHYWRLMNV-- 435
Query: 396 QKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESF 455
+ RNVMDMN+ +GGFAAA+ VWVMN+ P M+ L I++RGL G HDWCE+F
Sbjct: 436 NETEVRNVMDMNAFIGGFAAAMNSYPVWVMNIVPATMNDTLSGIFERGLNGAFHDWCEAF 495
Query: 456 STYPRTYDLLHAWKVFSEIEER---GCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRK 512
STYPRTYDL+H+ VFS + GC ED+++EMDR++RP+GFVIIRD+ II+ IR
Sbjct: 496 STYPRTYDLVHSDHVFSHYNKSYGDGCLLEDIMLEMDRIVRPQGFVIIRDEEYIISRIRG 555
Query: 513 FITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLW 548
W+ E+E + ++ E VL +K+ W
Sbjct: 556 LAPKFLWEVETHELENKDKKIT---ESVLFCRKRFW 588
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FG39|PMTC_ARATH Probable methyltransferase PMT12 OS=Arabidopsis thaliana GN=At5g06050 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 473 bits (1216), Expect = e-132, Method: Compositional matrix adjust.
Identities = 234/508 (46%), Positives = 321/508 (63%), Gaps = 31/508 (6%)
Query: 56 EHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVN 115
E +ER+CP NC VP P+GY+ P+ WP SRDEVW N+PHT L E+K Q+W+
Sbjct: 179 ERFERNCPNDGMGLNCTVPIPQGYRSPIPWPRSRDEVWFNNVPHTKLVEDKGGQNWIYKE 238
Query: 116 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS 175
+K FPGGGT F GAD+Y+ +++M+ ++ G + R VLD+GCGVASFGAYL+S
Sbjct: 239 NDKFKFPGGGTQFIHGADQYLDQISQMIP----DISFGNHTRVVLDIGCGVASFGAYLMS 294
Query: 176 HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 235
+++ MS+AP DVHENQIQFALERG+P+ + T+RL YPS++F+L HCSRCRI+W +
Sbjct: 295 RNVLTMSIAPKDVHENQIQFALERGVPAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRD 354
Query: 236 DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIW 295
DGILLLE++R+LR GGYFV+++ Y H+ W M +L +CW +V K+ IW
Sbjct: 355 DGILLLEVNRMLRAGGYFVWAAQPVYKHEKALEEQWEEMLNLTTRLCWVLVKKEGYIAIW 414
Query: 296 AKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPAR 355
KP++N+CYL R G PPLC+S+DDPD W V +KACI+ + G L PWPAR
Sbjct: 415 QKPVNNTCYLSRGAGVSPPLCNSEDDPDNVWYVDLKACITRIEENGY---GANLAPWPAR 471
Query: 356 LTAPPPRLEEVGVTT-----EEFHEDIGIWQVRVVDY-----WKQMKTVAQKNTFRNVMD 405
L PP RL+ + + + E F + W+ + +Y WKQ+ RNV+D
Sbjct: 472 LLTPPDRLQTIQIDSYIARKELFVAESKYWKEIISNYVNALHWKQIG-------LRNVLD 524
Query: 406 MNSNLGGFAAALKD--KDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYD 463
M + GGFAAAL + D WV+NV PV L +IYDRGL+G +HDWCE F TYPRTYD
Sbjct: 525 MRAGFGGFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYD 584
Query: 464 LLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWL 523
LLHA +FS IE + C+ +++EMDR+LRP G V IRD ++ + +++ A++W L
Sbjct: 585 LLHAAGLFS-IERKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQEIGNAMRWHTSL 643
Query: 524 SEVEPRIDALSSSEERVLIAKKKLWDEE 551
E S RVL+ +K+ E
Sbjct: 644 RETAEG----PHSSYRVLLCEKRFESSE 667
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94KE1|PMTA_ARATH Probable methyltransferase PMT10 OS=Arabidopsis thaliana GN=At1g77260 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 465 bits (1196), Expect = e-130, Method: Compositional matrix adjust.
Identities = 236/535 (44%), Positives = 329/535 (61%), Gaps = 37/535 (6%)
Query: 25 CSKIKSSILKCPKASPNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVR 84
C K K + C ++K N E+YERHCP ++ +CL+PPP GYK P++
Sbjct: 146 CDKTKIDYIPCLDNEE----EIKRLNNTDRGENYERHCP--KQSLDCLIPPPDGYKKPIQ 199
Query: 85 WPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLK 144
WP SRD++W N+PHT L E+K Q+W+ +K FPGGGT F GAD+Y+ +++M+
Sbjct: 200 WPQSRDKIWFNNVPHTRLVEDKGGQNWIRREKDKFVFPGGGTQFIHGADQYLDQISQMIP 259
Query: 145 FPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPST 204
+ G R LD+GCGVASFGA+L+ + +S+AP DVHENQIQFALERG+P+
Sbjct: 260 ----DITFGSRTRVALDIGCGVASFGAFLMQRNTTTLSVAPKDVHENQIQFALERGVPAM 315
Query: 205 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD 264
+ V T+RL YPS+SFE+ HCSRCRI+W + DGILLLE++R+LR GGYFV+++ Y H+
Sbjct: 316 VAVFATRRLLYPSQSFEMIHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHE 375
Query: 265 PENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDV 324
+ W M DL +CW+++ K+ +W KP++NSCY+ R G++PPLC DDDPD
Sbjct: 376 DNLQEQWKEMLDLTNRICWELIKKEGYIAVWRKPLNNSCYVSREAGTKPPLCRPDDDPDD 435
Query: 325 TWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTT-----EEFHEDIGI 379
W V MK CI+ + G + WPARL PP RL+ + + E +
Sbjct: 436 VWYVDMKPCITRLPDNGY---GANVSTWPARLHDPPERLQSIQMDAYISRKEIMKAESRF 492
Query: 380 WQVRVVDY-----WKQMKTVAQKNTFRNVMDMNSNLGGFAAALKD--KDVWVMNVAPVRM 432
W V Y WK+ K RNV+DM + GGFAAAL D D WVMN+ PV
Sbjct: 493 WLEVVESYVRVFRWKEFK-------LRNVLDMRAGFGGFAAALNDLGLDCWVMNIVPVSG 545
Query: 433 SARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRML 492
L +IYDRGL G +HDWCE F TYPRTYDL+HA +FS +E++ C+ ++++EMDRML
Sbjct: 546 FNTLPVIYDRGLQGAMHDWCEPFDTYPRTYDLIHAAFLFS-VEKKRCNITNIMLEMDRML 604
Query: 493 RPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKL 547
RP G V IRD S+++ +++ A+ GW + V + +S R+LI K++
Sbjct: 605 RPGGHVYIRDSLSLMDQLQQVAKAI---GWTAGVHDTGEGPHAS-VRILICDKRI 655
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C884|PMTI_ARATH Probable methyltransferase PMT18 OS=Arabidopsis thaliana GN=At1g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 450 bits (1157), Expect = e-125, Method: Compositional matrix adjust.
Identities = 233/515 (45%), Positives = 322/515 (62%), Gaps = 34/515 (6%)
Query: 53 SLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWM 112
++M++ ERHCP + CL+PPP YKIP +WP SRD W NIPH L+ EK+ Q+W+
Sbjct: 135 NMMKYRERHCPSKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSIEKAIQNWI 194
Query: 113 VVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAY 172
V GE+ FPGGGT F GAD YI +AR++ G IR +D GCGVASFGAY
Sbjct: 195 QVEGERFRFPGGGTMFPRGADAYIDDIARLIPL------TDGAIRTAIDTGCGVASFGAY 248
Query: 173 LLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232
LL DI+AMS AP D HE Q+QFALERG+P+ +G++G++RLPYP+R+F+LAHCSRC I W
Sbjct: 249 LLKRDIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPW 308
Query: 233 LQRDGILLLELDRLLRPGGYFVYSSP--------EAYAHDPEN-RRIWNAMYDLLKSMCW 283
Q DG+ L E+DR+LRPGGY++ S P + + E+ ++ +++ D +S+CW
Sbjct: 309 FQNDGLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQEQDSIEDAARSLCW 368
Query: 284 KIVSKKDQTVIWAKPISN-SC-YLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKM 341
K V++K IW KPI++ C LKRV + PPLCS D PD W +++C++P
Sbjct: 369 KKVTEKGDLSIWQKPINHVECNKLKRVHKT-PPLCSKSDLPDFAWYKDLESCVTPLPEAN 427
Query: 342 HHEK--GTGLVPWPARLTAPPPRLEEVG-----VTTEEFHEDIGIWQVRVVDYWKQMKTV 394
++ G L WP R A PPR+ +G + E+F ED +W+ R + Y+KQ+
Sbjct: 428 SSDEFAGGALEDWPNRAFAVPPRI--IGGTIPDINAEKFREDNEVWKER-ISYYKQIMPE 484
Query: 395 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSAR-LKIIYDRGLIGTVHDWCE 453
+ FRN+MDMN+ LGGFAAA+ WVMNV PV + L +I++RG IGT DWCE
Sbjct: 485 LSRGRFRNIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFERGFIGTYQDWCE 544
Query: 454 SFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKF 513
FSTYPRTYDL+HA +FS E R C +L+EMDR+LRPEG V+ RD ++ I+
Sbjct: 545 GFSTYPRTYDLIHAGGLFSIYENR-CDVTLILLEMDRILRPEGTVVFRDTVEMLTKIQSI 603
Query: 514 ITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLW 548
++W + + E + E++L+A K W
Sbjct: 604 TNGMRWKSRILDHE----RGPFNPEKILLAVKSYW 634
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 555 | ||||||
| 224060159 | 528 | predicted protein [Populus trichocarpa] | 0.944 | 0.992 | 0.830 | 0.0 | |
| 255560962 | 603 | S-adenosylmethionine-dependent methyltra | 0.953 | 0.877 | 0.817 | 0.0 | |
| 359488775 | 612 | PREDICTED: probable methyltransferase PM | 0.951 | 0.862 | 0.819 | 0.0 | |
| 449450056 | 610 | PREDICTED: probable methyltransferase PM | 0.953 | 0.867 | 0.809 | 0.0 | |
| 449483797 | 610 | PREDICTED: probable methyltransferase PM | 0.953 | 0.867 | 0.807 | 0.0 | |
| 22326809 | 612 | putative methyltransferase PMT9 [Arabido | 0.940 | 0.852 | 0.780 | 0.0 | |
| 7573468 | 632 | putative protein [Arabidopsis thaliana] | 0.940 | 0.825 | 0.780 | 0.0 | |
| 42573369 | 612 | putative methyltransferase PMT9 [Arabido | 0.940 | 0.852 | 0.774 | 0.0 | |
| 157849758 | 608 | dehydration-responsive protein-related [ | 0.949 | 0.866 | 0.755 | 0.0 | |
| 297807471 | 593 | hypothetical protein ARALYDRAFT_909408 [ | 0.981 | 0.919 | 0.728 | 0.0 |
| >gi|224060159|ref|XP_002300064.1| predicted protein [Populus trichocarpa] gi|222847322|gb|EEE84869.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 906 bits (2342), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/526 (83%), Positives = 476/526 (90%), Gaps = 2/526 (0%)
Query: 25 CSKIKSSILKCPKASPNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVR 84
C S ++ C NLIYQLKLKPNL+LMEHYERHCPPPERR+NCL+PPP GYKIP+R
Sbjct: 2 CDIKHSELIPC--LDRNLIYQLKLKPNLTLMEHYERHCPPPERRFNCLIPPPIGYKIPIR 59
Query: 85 WPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLK 144
WP SRDEVWKANIPHTHLA+EKSDQ+WMVVNGEKINFPGGGTHFHDGA+KYI++LARMLK
Sbjct: 60 WPESRDEVWKANIPHTHLAQEKSDQNWMVVNGEKINFPGGGTHFHDGANKYIVSLARMLK 119
Query: 145 FPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPST 204
FP+DKL+NGGNIRNVLDVGCGVASFGAYLLSH IIAMS+APNDVHENQIQFALERGIPST
Sbjct: 120 FPNDKLHNGGNIRNVLDVGCGVASFGAYLLSHSIIAMSIAPNDVHENQIQFALERGIPST 179
Query: 205 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD 264
LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYF YSSPEAYA D
Sbjct: 180 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYALD 239
Query: 265 PENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDV 324
PENRRIWNAM+DLL+ MCW++ KKDQTVIW KP+ N CYLKR PG++PPLCS+ DDPD
Sbjct: 240 PENRRIWNAMHDLLRRMCWRVAVKKDQTVIWQKPLGNGCYLKRDPGTQPPLCSTGDDPDA 299
Query: 325 TWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRV 384
TWNV MKACI+PYSAKMH E+G+GLVPWP RLTA PRLE++GV+ E+FHED IWQ RV
Sbjct: 300 TWNVHMKACIAPYSAKMHKERGSGLVPWPKRLTAASPRLEDIGVSPEQFHEDTNIWQFRV 359
Query: 385 VDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGL 444
+YWKQMK+V +KN FRNVMDMNSNLGGF AALKD DVWVMNVAPV MSARLKIIYDRGL
Sbjct: 360 NEYWKQMKSVVRKNYFRNVMDMNSNLGGFGAALKDTDVWVMNVAPVNMSARLKIIYDRGL 419
Query: 445 IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 504
IGTVHDWCE+FSTYPRTYDLLHAW VFSEI+E GC EDLLIEMDR+LRP+GFVIIRDK
Sbjct: 420 IGTVHDWCEAFSTYPRTYDLLHAWGVFSEIQEHGCGVEDLLIEMDRILRPDGFVIIRDKP 479
Query: 505 SIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLWDE 550
IINYIRKF+TAL+WD WLSEVEPR DALS SEERVLIA+KKLW E
Sbjct: 480 LIINYIRKFVTALRWDRWLSEVEPRSDALSLSEERVLIARKKLWSE 525
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255560962|ref|XP_002521494.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223539393|gb|EEF40984.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 906 bits (2341), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/531 (81%), Positives = 479/531 (90%), Gaps = 2/531 (0%)
Query: 25 CSKIKSSILKCPKASPNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVR 84
C S ++ C NLIYQLKLKPNL+LMEHYERHCPPPERRYNCL+PPP GYKIP+R
Sbjct: 75 CDMKYSELIPC--LDRNLIYQLKLKPNLTLMEHYERHCPPPERRYNCLIPPPIGYKIPIR 132
Query: 85 WPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLK 144
WP SRDE+WK NIPHTHLA+EKSDQ+WMVVNG+KINFPGGGTHFH GADKYI +LARMLK
Sbjct: 133 WPESRDEIWKVNIPHTHLAQEKSDQNWMVVNGDKINFPGGGTHFHYGADKYIASLARMLK 192
Query: 145 FPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPST 204
FP+DKL+NGG IRNVLDVGCGVASFGAYLL+HDII MSLAPNDVHENQIQFALERGIPST
Sbjct: 193 FPNDKLHNGGYIRNVLDVGCGVASFGAYLLAHDIITMSLAPNDVHENQIQFALERGIPST 252
Query: 205 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD 264
LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYF YSSPEAYAHD
Sbjct: 253 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAHD 312
Query: 265 PENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDV 324
PENRRIW+AM+DLL MCW++V +KDQTVIWAKP SNSC+LKR PG++PPLCSSDDDPD
Sbjct: 313 PENRRIWSAMHDLLGRMCWRVVVRKDQTVIWAKPTSNSCFLKREPGTQPPLCSSDDDPDA 372
Query: 325 TWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRV 384
TWNV MKACISPYS+KMH E+G+GLVPWP RL A PPRLEE+GV+ EEF ED IWQ RV
Sbjct: 373 TWNVHMKACISPYSSKMHKERGSGLVPWPRRLIAAPPRLEEIGVSPEEFQEDTRIWQFRV 432
Query: 385 VDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGL 444
+YWKQMK+V +++ FRNVMDMNSNLGGF A LKD DVWVMNVAPV SARLKIIYDRGL
Sbjct: 433 SEYWKQMKSVVRRSYFRNVMDMNSNLGGFGAVLKDTDVWVMNVAPVNQSARLKIIYDRGL 492
Query: 445 IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 504
IGTVHDWCE+FSTYPRT+DLLHAW+VF+E+EE GCS EDLLIEMDR+LRP+GFVIIRDK
Sbjct: 493 IGTVHDWCEAFSTYPRTFDLLHAWEVFAEVEEHGCSSEDLLIEMDRILRPQGFVIIRDKP 552
Query: 505 SIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLWDEEVAAI 555
SIINYIRKF+TAL+WD W+SEVEPR DAL+ +EERVLI +KKLW EV+AI
Sbjct: 553 SIINYIRKFLTALRWDHWISEVEPRSDALALNEERVLIVRKKLWSGEVSAI 603
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488775|ref|XP_002271722.2| PREDICTED: probable methyltransferase PMT9-like [Vitis vinifera] gi|296087585|emb|CBI34841.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 898 bits (2321), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/532 (81%), Positives = 476/532 (89%), Gaps = 4/532 (0%)
Query: 24 TCSKIKSSILKCPKASPNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPV 83
C S ++ C NLIYQLKLKPNL+LMEHYERHCPPPERRYNCL+PPP GYKIP+
Sbjct: 85 VCDMRFSELIPC--LDRNLIYQLKLKPNLALMEHYERHCPPPERRYNCLIPPPIGYKIPI 142
Query: 84 RWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARML 143
RWPASRDEVWK NIPHTHLA EKSDQ+WMVVNG+KINFPGGGTHFH+GADKYI+ALARML
Sbjct: 143 RWPASRDEVWKVNIPHTHLASEKSDQNWMVVNGDKINFPGGGTHFHNGADKYIIALARML 202
Query: 144 KFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPS 203
KFP DKLNNGGNIRNVLDVGCGVASFGAYLL H+I+AMSLAPNDVHENQIQFALERGIPS
Sbjct: 203 KFPDDKLNNGGNIRNVLDVGCGVASFGAYLLPHNIMAMSLAPNDVHENQIQFALERGIPS 262
Query: 204 TLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH 263
TLGVLGTKRLPYPSRSFE+AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA
Sbjct: 263 TLGVLGTKRLPYPSRSFEMAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAR 322
Query: 264 DPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPD 323
D NRRIWNA DLLK MCW++VSKKDQTVIWAKP SNSC+ KR PG+ PPLCSSDDDPD
Sbjct: 323 DAVNRRIWNATSDLLKRMCWRVVSKKDQTVIWAKPTSNSCFAKRDPGTLPPLCSSDDDPD 382
Query: 324 VTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVR 383
+WNV MKACI+PYS K+H +KG+GLVPWP RLT P RLEE G++ EEF ED IW R
Sbjct: 383 ASWNVFMKACITPYSGKVHRQKGSGLVPWPQRLTTAPSRLEEFGISAEEFQEDTSIWYFR 442
Query: 384 VVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRG 443
V +YWKQMK+V +K++FRNVMDMNSNLGGFAAALKDKDVWVMNVAPV SA+LKIIYDRG
Sbjct: 443 VFEYWKQMKSVVEKDSFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVNASAKLKIIYDRG 502
Query: 444 LIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503
LIGTVHDWCESFSTYPRTYDLLHAW+VFSEIEE GCS EDLLIEMDR+LRP+GFVIIRD+
Sbjct: 503 LIGTVHDWCESFSTYPRTYDLLHAWQVFSEIEEHGCSSEDLLIEMDRILRPDGFVIIRDR 562
Query: 504 SSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLWDEEVAAI 555
SIINYI+KF+ AL+WDGW EVEPRID LS+S+ERVLIA+KK W EEV+ I
Sbjct: 563 PSIINYIQKFLIALRWDGWSIEVEPRIDVLSASDERVLIARKK-W-EEVSTI 612
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450056|ref|XP_004142780.1| PREDICTED: probable methyltransferase PMT9-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 898 bits (2321), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/531 (80%), Positives = 480/531 (90%), Gaps = 2/531 (0%)
Query: 25 CSKIKSSILKCPKASPNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVR 84
C + S ++ C NLIYQLKLK NLSLMEHYERHCPPPERRYNCL+PPP GYKIP+R
Sbjct: 82 CDERFSELIPC--LDRNLIYQLKLKLNLSLMEHYERHCPPPERRYNCLIPPPTGYKIPIR 139
Query: 85 WPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLK 144
WP SRDEVWKANIPHTHLA+EKSDQ+WMVVNG+KINFPGGGTHFH GADKYI+ALARMLK
Sbjct: 140 WPNSRDEVWKANIPHTHLAQEKSDQNWMVVNGDKINFPGGGTHFHYGADKYIIALARMLK 199
Query: 145 FPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPST 204
FP DKLNNGGN+RNVLDVGCGVASFGAYLLSHDI+AMSLAPNDVHENQIQFALERGIPST
Sbjct: 200 FPGDKLNNGGNLRNVLDVGCGVASFGAYLLSHDIVAMSLAPNDVHENQIQFALERGIPST 259
Query: 205 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD 264
LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYF YSSPEAYAHD
Sbjct: 260 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAHD 319
Query: 265 PENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDV 324
ENRRI AM+D+LK MCWK+V+KKDQTVIW KP+SNSCYLKR PG+ PPLC+ DDD D+
Sbjct: 320 QENRRIGMAMHDILKRMCWKVVAKKDQTVIWGKPMSNSCYLKRDPGTLPPLCNLDDDSDL 379
Query: 325 TWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRV 384
TWNV M+ACIS YSAKMH +KG+GLVPWP RLT+ PPRLEEVGV+ EEF ED +WQ+RV
Sbjct: 380 TWNVSMQACISRYSAKMHKQKGSGLVPWPQRLTSAPPRLEEVGVSAEEFKEDSTVWQLRV 439
Query: 385 VDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGL 444
+YWK+M+ V Q+++ RNVMDMNSNLGGFAAAL +KDVWVMNVAP+ SA+LKI+YDRGL
Sbjct: 440 AEYWKEMRLVIQRDSIRNVMDMNSNLGGFAAALINKDVWVMNVAPINSSAKLKIVYDRGL 499
Query: 445 IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 504
+GTVHDWCE+FSTYPRTYDLLHAW VFS+I RGCS EDLLIEMDR+LRP+GFVIIRD
Sbjct: 500 LGTVHDWCEAFSTYPRTYDLLHAWAVFSDINVRGCSMEDLLIEMDRILRPDGFVIIRDVP 559
Query: 505 SIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLWDEEVAAI 555
S+INYIRK+ TAL+WDGWLSEVEPR+DALS EERVLIA+KKLW++E+A +
Sbjct: 560 SVINYIRKYFTALRWDGWLSEVEPRVDALSKVEERVLIARKKLWEKELATV 610
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449483797|ref|XP_004156694.1| PREDICTED: probable methyltransferase PMT9-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2319), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/531 (80%), Positives = 480/531 (90%), Gaps = 2/531 (0%)
Query: 25 CSKIKSSILKCPKASPNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVR 84
C + S ++ C NLIYQLKLK NLSLMEHYERHCPPPERRYNCL+PPP GYKIP+R
Sbjct: 82 CDERFSELIPC--LDRNLIYQLKLKLNLSLMEHYERHCPPPERRYNCLIPPPTGYKIPIR 139
Query: 85 WPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLK 144
WP SRDEVWKANIPHTHLA+EKSDQ+WMVVNG+KINFPGGGTHFH GADKYI+ALARMLK
Sbjct: 140 WPNSRDEVWKANIPHTHLAQEKSDQNWMVVNGDKINFPGGGTHFHYGADKYIIALARMLK 199
Query: 145 FPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPST 204
FP DKLNNGGN+RNVLDVGCGVASFGAYLLSHDI+AMSLAPNDVHENQIQFALERGIPST
Sbjct: 200 FPGDKLNNGGNLRNVLDVGCGVASFGAYLLSHDIVAMSLAPNDVHENQIQFALERGIPST 259
Query: 205 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD 264
LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYF YSSPEAYAHD
Sbjct: 260 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAHD 319
Query: 265 PENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDV 324
ENRRI AM+D+LK MCWK+V+KKDQTVIW KP+SNSCYLKR PG+ PPLC+ DDD D+
Sbjct: 320 QENRRIGMAMHDILKRMCWKVVAKKDQTVIWGKPMSNSCYLKRDPGTLPPLCNLDDDSDL 379
Query: 325 TWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRV 384
TWNV M+ACIS YSAKMH +KG+GLVPWP RLT+ PPRLEEVGV+ EEF ED +WQ+RV
Sbjct: 380 TWNVSMQACISRYSAKMHKQKGSGLVPWPQRLTSAPPRLEEVGVSAEEFKEDSTVWQLRV 439
Query: 385 VDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGL 444
+YWK+M+ V Q+++ RNVMDMNSNLGGFAAAL +KDVWVMNVAP+ SA+LKI+YDRGL
Sbjct: 440 AEYWKEMRLVIQRDSIRNVMDMNSNLGGFAAALINKDVWVMNVAPINSSAKLKIVYDRGL 499
Query: 445 IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 504
+GTVHDWCE+FSTYPRTYDLLHAW VFS+I RGCS EDLLIEMDR+LRP+GFVIIRD
Sbjct: 500 LGTVHDWCEAFSTYPRTYDLLHAWAVFSDINVRGCSMEDLLIEMDRILRPDGFVIIRDVP 559
Query: 505 SIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLWDEEVAAI 555
S+INYIR++ TAL+WDGWLSEVEPR+DALS EERVLIA+KKLW++E+A +
Sbjct: 560 SVINYIRQYFTALRWDGWLSEVEPRVDALSKVEERVLIARKKLWEKELATV 610
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22326809|ref|NP_196947.2| putative methyltransferase PMT9 [Arabidopsis thaliana] gi|75248535|sp|Q8VZV7.1|PMT9_ARATH RecName: Full=Probable methyltransferase PMT9 gi|17380666|gb|AAL36163.1| unknown protein [Arabidopsis thaliana] gi|21280807|gb|AAM45045.1| unknown protein [Arabidopsis thaliana] gi|332004649|gb|AED92032.1| putative methyltransferase PMT9 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/524 (78%), Positives = 459/524 (87%), Gaps = 2/524 (0%)
Query: 25 CSKIKSSILKCPKASPNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVR 84
C S ++ C NL YQLKLK NLSLMEHYE HCPP ERR+NCLVPPP GYKIP+R
Sbjct: 83 CDSRHSELIPC--LDRNLHYQLKLKLNLSLMEHYEHHCPPSERRFNCLVPPPVGYKIPLR 140
Query: 85 WPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLK 144
WP SRDEVWKANIPHTHLA+EKSDQ+WMVVNG+KINFPGGGTHFH+GADKYI++LA+MLK
Sbjct: 141 WPVSRDEVWKANIPHTHLAQEKSDQNWMVVNGDKINFPGGGTHFHNGADKYIVSLAQMLK 200
Query: 145 FPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPST 204
FP DKLNNGG+IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVH+NQIQFALERGIPST
Sbjct: 201 FPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHQNQIQFALERGIPST 260
Query: 205 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD 264
LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD
Sbjct: 261 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD 320
Query: 265 PENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDV 324
PENR+I NAM+DL K MCWK+V+K+DQ+VIW KPISNSCYLKR PG PPLC S DDPD
Sbjct: 321 PENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKPISNSCYLKRDPGVLPPLCPSGDDPDA 380
Query: 325 TWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRV 384
TWNV MKACISPYS +MH E+ +GLVPWP RLTAPPPRLEE+GVT E+F ED W++RV
Sbjct: 381 TWNVSMKACISPYSVRMHKERWSGLVPWPRRLTAPPPRLEEIGVTPEQFREDTETWRLRV 440
Query: 385 VDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGL 444
++YWK +K + QKN+ RNVMDM+SNLGGFAAAL DKDVWVMNV PV+ S R+KIIYDRGL
Sbjct: 441 IEYWKLLKPMVQKNSIRNVMDMSSNLGGFAAALNDKDVWVMNVMPVQSSPRMKIIYDRGL 500
Query: 445 IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 504
IG HDWCE+F TYPRT+DL+HAW F+E + RGCSFEDLLIEMDR+LRPEGFVIIRD +
Sbjct: 501 IGATHDWCEAFDTYPRTFDLIHAWNTFTETQARGCSFEDLLIEMDRILRPEGFVIIRDTT 560
Query: 505 SIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLW 548
I+YI+K++T LKWD W +E P+ D LS+ +E VLIA+KKLW
Sbjct: 561 DNISYIKKYLTLLKWDKWSTETTPKGDPLSTKDEIVLIARKKLW 604
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7573468|emb|CAB87782.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/524 (78%), Positives = 459/524 (87%), Gaps = 2/524 (0%)
Query: 25 CSKIKSSILKCPKASPNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVR 84
C S ++ C NL YQLKLK NLSLMEHYE HCPP ERR+NCLVPPP GYKIP+R
Sbjct: 103 CDSRHSELIPC--LDRNLHYQLKLKLNLSLMEHYEHHCPPSERRFNCLVPPPVGYKIPLR 160
Query: 85 WPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLK 144
WP SRDEVWKANIPHTHLA+EKSDQ+WMVVNG+KINFPGGGTHFH+GADKYI++LA+MLK
Sbjct: 161 WPVSRDEVWKANIPHTHLAQEKSDQNWMVVNGDKINFPGGGTHFHNGADKYIVSLAQMLK 220
Query: 145 FPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPST 204
FP DKLNNGG+IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVH+NQIQFALERGIPST
Sbjct: 221 FPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHQNQIQFALERGIPST 280
Query: 205 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD 264
LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD
Sbjct: 281 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD 340
Query: 265 PENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDV 324
PENR+I NAM+DL K MCWK+V+K+DQ+VIW KPISNSCYLKR PG PPLC S DDPD
Sbjct: 341 PENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKPISNSCYLKRDPGVLPPLCPSGDDPDA 400
Query: 325 TWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRV 384
TWNV MKACISPYS +MH E+ +GLVPWP RLTAPPPRLEE+GVT E+F ED W++RV
Sbjct: 401 TWNVSMKACISPYSVRMHKERWSGLVPWPRRLTAPPPRLEEIGVTPEQFREDTETWRLRV 460
Query: 385 VDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGL 444
++YWK +K + QKN+ RNVMDM+SNLGGFAAAL DKDVWVMNV PV+ S R+KIIYDRGL
Sbjct: 461 IEYWKLLKPMVQKNSIRNVMDMSSNLGGFAAALNDKDVWVMNVMPVQSSPRMKIIYDRGL 520
Query: 445 IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 504
IG HDWCE+F TYPRT+DL+HAW F+E + RGCSFEDLLIEMDR+LRPEGFVIIRD +
Sbjct: 521 IGATHDWCEAFDTYPRTFDLIHAWNTFTETQARGCSFEDLLIEMDRILRPEGFVIIRDTT 580
Query: 505 SIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLW 548
I+YI+K++T LKWD W +E P+ D LS+ +E VLIA+KKLW
Sbjct: 581 DNISYIKKYLTLLKWDKWSTETTPKGDPLSTKDEIVLIARKKLW 624
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42573369|ref|NP_974781.1| putative methyltransferase PMT9 [Arabidopsis thaliana] gi|332004650|gb|AED92033.1| putative methyltransferase PMT9 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 849 bits (2194), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/524 (77%), Positives = 458/524 (87%), Gaps = 2/524 (0%)
Query: 25 CSKIKSSILKCPKASPNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVR 84
C S ++ C NL YQLKLK NLSLMEHYE HCPP ERR+NCLVPPP ++IP+R
Sbjct: 83 CDSRHSELIPC--LDRNLHYQLKLKLNLSLMEHYEHHCPPSERRFNCLVPPPVVFQIPLR 140
Query: 85 WPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLK 144
WP SRDEVWKANIPHTHLA+EKSDQ+WMVVNG+KINFPGGGTHFH+GADKYI++LA+MLK
Sbjct: 141 WPVSRDEVWKANIPHTHLAQEKSDQNWMVVNGDKINFPGGGTHFHNGADKYIVSLAQMLK 200
Query: 145 FPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPST 204
FP DKLNNGG+IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVH+NQIQFALERGIPST
Sbjct: 201 FPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHQNQIQFALERGIPST 260
Query: 205 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD 264
LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD
Sbjct: 261 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD 320
Query: 265 PENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDV 324
PENR+I NAM+DL K MCWK+V+K+DQ+VIW KPISNSCYLKR PG PPLC S DDPD
Sbjct: 321 PENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKPISNSCYLKRDPGVLPPLCPSGDDPDA 380
Query: 325 TWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRV 384
TWNV MKACISPYS +MH E+ +GLVPWP RLTAPPPRLEE+GVT E+F ED W++RV
Sbjct: 381 TWNVSMKACISPYSVRMHKERWSGLVPWPRRLTAPPPRLEEIGVTPEQFREDTETWRLRV 440
Query: 385 VDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGL 444
++YWK +K + QKN+ RNVMDM+SNLGGFAAAL DKDVWVMNV PV+ S R+KIIYDRGL
Sbjct: 441 IEYWKLLKPMVQKNSIRNVMDMSSNLGGFAAALNDKDVWVMNVMPVQSSPRMKIIYDRGL 500
Query: 445 IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 504
IG HDWCE+F TYPRT+DL+HAW F+E + RGCSFEDLLIEMDR+LRPEGFVIIRD +
Sbjct: 501 IGATHDWCEAFDTYPRTFDLIHAWNTFTETQARGCSFEDLLIEMDRILRPEGFVIIRDTT 560
Query: 505 SIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLW 548
I+YI+K++T LKWD W +E P+ D LS+ +E VLIA+KKLW
Sbjct: 561 DNISYIKKYLTLLKWDKWSTETTPKGDPLSTKDEIVLIARKKLW 604
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|157849758|gb|ABV89662.1| dehydration-responsive protein-related [Brassica rapa] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/532 (75%), Positives = 460/532 (86%), Gaps = 5/532 (0%)
Query: 25 CSKIKSSILKCPKASPNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVR 84
C S ++ C +L +QLKL+ NL+LMEHYE HCPPPERR+NCLVPPP GY IP++
Sbjct: 78 CDSKHSDLIPC--LDRDLYHQLKLRLNLTLMEHYEHHCPPPERRFNCLVPPPAGYMIPIK 135
Query: 85 WPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLK 144
WP SRDEVWKANIPHTHLA+EKSDQ+WMVVNG+KINFPGGGTHFH GADKYI++LA+MLK
Sbjct: 136 WPVSRDEVWKANIPHTHLAQEKSDQNWMVVNGDKINFPGGGTHFHYGADKYIVSLAQMLK 195
Query: 145 FPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPST 204
FP DKLNNGG+IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVH+NQIQFALERGIPST
Sbjct: 196 FPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHQNQIQFALERGIPST 255
Query: 205 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD 264
LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD
Sbjct: 256 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD 315
Query: 265 PENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDV 324
PENR+I AM+DL + MCW++V+K+DQ+VIW KPISNSCYLKR PG +PPLC S DDPD
Sbjct: 316 PENRKIGTAMHDLFRRMCWRVVAKRDQSVIWGKPISNSCYLKRGPGVQPPLCPSGDDPDA 375
Query: 325 TWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRV 384
TWNV MKACI+PYS +MH E+ +GLVPWP RLTAPPPRLEE+GVT E+F ED W+ RV
Sbjct: 376 TWNVSMKACITPYSVRMHKERWSGLVPWPRRLTAPPPRLEEIGVTPEQFREDTETWRHRV 435
Query: 385 VDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGL 444
++YWK +K + QKN+ RNVMDM+SNLGGFAAAL DKDVWVMNV PV+ R+KIIYDRGL
Sbjct: 436 MEYWKLLKPMVQKNSIRNVMDMSSNLGGFAAALNDKDVWVMNVIPVQSQPRMKIIYDRGL 495
Query: 445 IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 504
IG HDWCE+F TYPRT+DL+HAW F+E + RGCS ED IEMDR+LRPEGFVIIRD S
Sbjct: 496 IGATHDWCEAFDTYPRTFDLIHAWNTFTETQARGCSIEDFFIEMDRILRPEGFVIIRDTS 555
Query: 505 SIINYIRKFITALKWDGWLSEVEPRIDALSSS-EERVLIAKKKLWDEEVAAI 555
I+YI+K++T LKWD W++E P D+LS++ +ERVLIA+KKLW VAAI
Sbjct: 556 ENISYIKKYLTLLKWDKWMTETTPNGDSLSAAKDERVLIARKKLW--SVAAI 605
|
Source: Brassica rapa Species: Brassica rapa Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807471|ref|XP_002871619.1| hypothetical protein ARALYDRAFT_909408 [Arabidopsis lyrata subsp. lyrata] gi|297317456|gb|EFH47878.1| hypothetical protein ARALYDRAFT_909408 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2138), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/546 (72%), Positives = 458/546 (83%), Gaps = 1/546 (0%)
Query: 4 PGSMDPTRFSGPLAGTAISMTCSKIKSSILKCPKASPNLIYQLKLKPNLSLMEHYE-RHC 62
PGS F G + + + +L + ++ +L L+E HC
Sbjct: 40 PGSRKSDEFDGSNHRVRTGIGSVRNRDGVLAVSRFEVPKSVPVRESNHLILIELARLHHC 99
Query: 63 PPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFP 122
PPPERR+NCLVPPP GYKIP+RWP SRDEVWKANIPHTHLA+EKSDQ+WMVVNG+KINFP
Sbjct: 100 PPPERRFNCLVPPPIGYKIPLRWPVSRDEVWKANIPHTHLAQEKSDQNWMVVNGDKINFP 159
Query: 123 GGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMS 182
GGGTHFH+GADKYI++LA+MLKFP DKLNNGG+IRNVLDVGCGVASFGAYLLSHDIIAMS
Sbjct: 160 GGGTHFHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDIIAMS 219
Query: 183 LAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLE 242
LAPNDVH+NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLE
Sbjct: 220 LAPNDVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLE 279
Query: 243 LDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNS 302
LDRLLRPGGYFVYSSPEAYAHDPENR+I NAM+DL K MCWK+V+K+DQ+VIW KPISNS
Sbjct: 280 LDRLLRPGGYFVYSSPEAYAHDPENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKPISNS 339
Query: 303 CYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPR 362
CYLKR PG PPLC S DDPD TWNV MKACISPYS +MH E+ +GLVPWP RLTAPPPR
Sbjct: 340 CYLKRDPGVLPPLCPSGDDPDATWNVSMKACISPYSVRMHKERWSGLVPWPRRLTAPPPR 399
Query: 363 LEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDV 422
LEE+GVT E+F ED W++RV++YWK +K + QKN+ RNVMDM+SNLGGFAAAL DKDV
Sbjct: 400 LEEIGVTPEQFREDTETWRLRVIEYWKLLKPMVQKNSIRNVMDMSSNLGGFAAALNDKDV 459
Query: 423 WVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFE 482
WVMNV PV+ S R+KIIYDRGLIG HDWCE+F TYPRT+DL+HAW F+E + RGCSFE
Sbjct: 460 WVMNVMPVQSSPRMKIIYDRGLIGATHDWCEAFDTYPRTFDLIHAWNTFTETQTRGCSFE 519
Query: 483 DLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLI 542
DLLIEMDR+LRPEGFVIIRD + I+YI+K++T LKWD W +E P+ D+LS+ ++RVLI
Sbjct: 520 DLLIEMDRILRPEGFVIIRDTTDNISYIKKYLTLLKWDKWSTETTPKGDSLSTKDDRVLI 579
Query: 543 AKKKLW 548
A+K+LW
Sbjct: 580 ARKRLW 585
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 555 | ||||||
| TAIR|locus:2145658 | 612 | AT5G14430 [Arabidopsis thalian | 0.940 | 0.852 | 0.761 | 2.8e-231 | |
| TAIR|locus:2129660 | 608 | AT4G14360 [Arabidopsis thalian | 0.933 | 0.851 | 0.633 | 2.1e-194 | |
| TAIR|locus:2090935 | 611 | AT3G23300 [Arabidopsis thalian | 0.936 | 0.851 | 0.635 | 9.2e-194 | |
| TAIR|locus:2018329 | 623 | AT1G04430 [Arabidopsis thalian | 0.940 | 0.837 | 0.638 | 5.1e-193 | |
| TAIR|locus:2150670 | 600 | AT5G04060 [Arabidopsis thalian | 0.960 | 0.888 | 0.441 | 8e-124 | |
| TAIR|locus:2063947 | 694 | AT2G39750 [Arabidopsis thalian | 0.857 | 0.685 | 0.473 | 2.8e-121 | |
| TAIR|locus:2076264 | 591 | AT3G10200 [Arabidopsis thalian | 0.895 | 0.840 | 0.461 | 5.8e-121 | |
| TAIR|locus:2153704 | 682 | AT5G06050 [Arabidopsis thalian | 0.866 | 0.705 | 0.446 | 2e-118 | |
| TAIR|locus:2195955 | 655 | AT1G77260 [Arabidopsis thalian | 0.906 | 0.767 | 0.430 | 1.1e-117 | |
| TAIR|locus:2196651 | 639 | AT1G33170 [Arabidopsis thalian | 0.866 | 0.752 | 0.448 | 9.1e-116 |
| TAIR|locus:2145658 AT5G14430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2231 (790.4 bits), Expect = 2.8e-231, P = 2.8e-231
Identities = 399/524 (76%), Positives = 449/524 (85%)
Query: 25 CSKIKSSILKCPKASPNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVR 84
C S ++ C NL YQLKLK NLSLMEHYE HCPP ERR+NCLVPPP GYKIP+R
Sbjct: 83 CDSRHSELIPC--LDRNLHYQLKLKLNLSLMEHYEHHCPPSERRFNCLVPPPVGYKIPLR 140
Query: 85 WPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLK 144
WP SRDEVWKANIPHTHLA+EKSDQ+WMVVNG+KINFPGGGTHFH+GADKYI++LA+MLK
Sbjct: 141 WPVSRDEVWKANIPHTHLAQEKSDQNWMVVNGDKINFPGGGTHFHNGADKYIVSLAQMLK 200
Query: 145 FPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPST 204
FP DKLNNGG+IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVH+NQIQFALERGIPST
Sbjct: 201 FPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHQNQIQFALERGIPST 260
Query: 205 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXXXXXXPGGYFVYSSPEAYAHD 264
LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI PGGYFVYSSPEAYAHD
Sbjct: 261 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD 320
Query: 265 PENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDV 324
PENR+I NAM+DL K MCWK+V+K+DQ+VIW KPISNSCYLKR PG PPLC S DDPD
Sbjct: 321 PENRKIGNAMHDLFKRMCWKVVAKRDQSVIWGKPISNSCYLKRDPGVLPPLCPSGDDPDA 380
Query: 325 TWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRV 384
TWNV MKACISPYS +MH E+ +GLVPWP RLTAPPPRLEE+GVT E+F ED W++RV
Sbjct: 381 TWNVSMKACISPYSVRMHKERWSGLVPWPRRLTAPPPRLEEIGVTPEQFREDTETWRLRV 440
Query: 385 VDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGL 444
++YWK +K + QKN+ RNVMDM+SNLGGFAAAL DKDVWVMNV PV+ S R+KIIYDRGL
Sbjct: 441 IEYWKLLKPMVQKNSIRNVMDMSSNLGGFAAALNDKDVWVMNVMPVQSSPRMKIIYDRGL 500
Query: 445 IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 504
IG HDWCE+F TYPRT+DL+HAW F+E + RGCSFEDLLIEMDR+LRPEGFVIIRD +
Sbjct: 501 IGATHDWCEAFDTYPRTFDLIHAWNTFTETQARGCSFEDLLIEMDRILRPEGFVIIRDTT 560
Query: 505 SIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLW 548
I+YI+K++T LKWD W +E P+ D LS+ +E VLIA+KKLW
Sbjct: 561 DNISYIKKYLTLLKWDKWSTETTPKGDPLSTKDEIVLIARKKLW 604
|
|
| TAIR|locus:2129660 AT4G14360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1883 (667.9 bits), Expect = 2.1e-194, P = 2.1e-194
Identities = 333/526 (63%), Positives = 409/526 (77%)
Query: 25 CSKIKSSILKCPKASPNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVR 84
C S ++ C NLIYQ++LK +LSLMEHYERHCPPPERR+NCL+PPP GYK+P++
Sbjct: 79 CDDRHSELIPC--LDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPNGYKVPIK 136
Query: 85 WPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLK 144
WP SRDEVWK NIPHTHLA EKSDQ+WMVV G+KINFPGGGTHFH GADKYI ++A ML
Sbjct: 137 WPKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGDKINFPGGGTHFHYGADKYIASMANMLN 196
Query: 145 FPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPST 204
+P++ LNNGG +R V DVGCGVASFG YLLS DI+ MSLAPNDVH+NQIQFALERGIP++
Sbjct: 197 YPNNVLNNGGRLRTVFDVGCGVASFGGYLLSSDILTMSLAPNDVHQNQIQFALERGIPAS 256
Query: 205 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXXXXXXPGGYFVYSSPEAYAHD 264
LGVLGTKRLPYPSRSFEL+HCSRCRIDWLQRDGI PGGYF YSSPEAYA D
Sbjct: 257 LGVLGTKRLPYPSRSFELSHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQD 316
Query: 265 PENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDV 324
E+ RIW M L++ MCWKI +K++QTVIW KP++N CYL+R PG++PPLC SD+DPD
Sbjct: 317 EEDLRIWREMSALVERMCWKIAAKRNQTVIWQKPLTNDCYLEREPGTQPPLCRSDNDPDA 376
Query: 325 TWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRV 384
W V M+ACI+ YS H KG+GL PWPARLT+PPPRL + G +T F +D +W+ RV
Sbjct: 377 VWGVNMEACITSYSDHDHKTKGSGLAPWPARLTSPPPRLADFGYSTGMFEKDTELWRQRV 436
Query: 385 VDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGL 444
YW + + +T RN+MDM +++G FAAALK+KDVWVMNV P LK+IYDRGL
Sbjct: 437 DTYWDLLSPRIESDTVRNIMDMKASMGSFAAALKEKDVWVMNVVPEDGPNTLKLIYDRGL 496
Query: 445 IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 504
+G VH WCE+FSTYPRTYDLLHAW + S+I+++GCS DLL+EMDR+LRP GF+IIRDK
Sbjct: 497 MGAVHSWCEAFSTYPRTYDLLHAWDIISDIKKKGCSEVDLLLEMDRILRPSGFIIIRDKQ 556
Query: 505 SIINYIRKFITALKWDGWLSEVEPRIDALSS--SEERVLIAKKKLW 548
++++++K++ AL W+ EV + D+ S S+ V I +KKLW
Sbjct: 557 RVVDFVKKYLKALHWE----EVGTKTDSDSDQDSDNVVFIVQKKLW 598
|
|
| TAIR|locus:2090935 AT3G23300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1877 (665.8 bits), Expect = 9.2e-194, P = 9.2e-194
Identities = 333/524 (63%), Positives = 405/524 (77%)
Query: 25 CSKIKSSILKCPKASPNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVR 84
C S ++ C NLIYQ++LK +LSLMEHYERHCPPPERR+NCL+PPP GYKIP++
Sbjct: 82 CDDRHSELIPC--LDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPPGYKIPIK 139
Query: 85 WPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLK 144
WP SRDEVWK NIPHTHLA EKSDQ+WMVV GEKINFPGGGTHFH GADKYI ++A ML
Sbjct: 140 WPKSRDEVWKVNIPHTHLAHEKSDQNWMVVKGEKINFPGGGTHFHYGADKYIASMANMLN 199
Query: 145 FPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPST 204
FP++ LNNGG +R LDVGCGVASFG YLL+ +I+ MSLAPNDVH+NQIQFALERGIP+
Sbjct: 200 FPNNVLNNGGRLRTFLDVGCGVASFGGYLLASEIMTMSLAPNDVHQNQIQFALERGIPAY 259
Query: 205 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXXXXXXPGGYFVYSSPEAYAHD 264
LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI PGGYF YSSPEAYA D
Sbjct: 260 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQD 319
Query: 265 PENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDV 324
E+ RIW M L+ MCW I +K++QTVIW KP++N CYL R PG++PPLC+SD DPD
Sbjct: 320 EEDLRIWREMSALVGRMCWTIAAKRNQTVIWQKPLTNDCYLGREPGTQPPLCNSDSDPDA 379
Query: 325 TWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRV 384
+ V M+ACI+ YS H KG+GL PWPARLT+PPPRL + G +T+ F +D W+ RV
Sbjct: 380 VYGVNMEACITQYSDHDHKTKGSGLAPWPARLTSPPPRLADFGYSTDIFEKDTETWRQRV 439
Query: 385 VDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGL 444
YW + Q +T RN+MDM +++G FAAALK+KDVWVMNV P LK+IYDRGL
Sbjct: 440 DTYWDLLSPKIQSDTVRNIMDMKASMGSFAAALKEKDVWVMNVVPEDGPNTLKLIYDRGL 499
Query: 445 IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 504
+G VH WCE+FSTYPRTYDLLHAW + S+I++RGCS EDLL+EMDR+LRP GF++IRDK
Sbjct: 500 MGAVHSWCEAFSTYPRTYDLLHAWDIISDIKKRGCSAEDLLLEMDRILRPSGFILIRDKQ 559
Query: 505 SIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLW 548
S+++ ++K++ AL W+ E + ++ S+ +LI +KKLW
Sbjct: 560 SVVDLVKKYLKALHWEA--VETKTASESDQDSDNVILIVQKKLW 601
|
|
| TAIR|locus:2018329 AT1G04430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1870 (663.3 bits), Expect = 5.1e-193, P = 5.1e-193
Identities = 338/529 (63%), Positives = 404/529 (76%)
Query: 25 CSKIKSSILKCPKASPNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVR 84
C S I+ C N IYQ++LK +LSLMEHYERHCPPPERR+NCL+PPP GYK+P++
Sbjct: 87 CDDRHSEIIPC--LDRNFIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPSGYKVPIK 144
Query: 85 WPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLK 144
WP SRDEVWKANIPHTHLA+EKSDQ+WMV GEKI+FPGGGTHFH GADKYI ++A ML
Sbjct: 145 WPKSRDEVWKANIPHTHLAKEKSDQNWMVEKGEKISFPGGGTHFHYGADKYIASIANMLN 204
Query: 145 FPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPST 204
F +D LN+ G +R VLDVGCGVASFGAYLL+ DI+ MSLAPNDVH+NQIQFALERGIP+
Sbjct: 205 FSNDVLNDEGRLRTVLDVGCGVASFGAYLLASDIMTMSLAPNDVHQNQIQFALERGIPAY 264
Query: 205 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXXXXXXPGGYFVYSSPEAYAHD 264
LGVLGTKRLPYPSRSFE AHCSRCRIDWLQRDG+ PGGYF YSSPEAYA D
Sbjct: 265 LGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGLLLLELDRVLRPGGYFAYSSPEAYAQD 324
Query: 265 PENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDV 324
EN +IW M L++ MCW+I K++QTV+W KP+SN CYL+R PG++PPLC SD DPD
Sbjct: 325 EENLKIWKEMSALVERMCWRIAVKRNQTVVWQKPLSNDCYLEREPGTQPPLCRSDADPDA 384
Query: 325 TWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRV 384
V M+ACI+PYS H KG+GL PWPARLT+ PPRL + G +T+ F +D +W+ +V
Sbjct: 385 VAGVSMEACITPYSKHDHKTKGSGLAPWPARLTSSPPRLADFGYSTDMFEKDTELWKQQV 444
Query: 385 VDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGL 444
YW M + + NT RN+MDM +++G FAAALKDKDVWVMNV LK+IYDRGL
Sbjct: 445 DSYWNLMSSKVKSNTVRNIMDMKAHMGSFAAALKDKDVWVMNVVSPDGPNTLKLIYDRGL 504
Query: 445 IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 504
IGT H+WCE+FSTYPRTYDLLHAW +FS+I+ +GCS EDLLIEMDR+LRP GFVIIRDK
Sbjct: 505 IGTNHNWCEAFSTYPRTYDLLHAWSIFSDIKSKGCSAEDLLIEMDRILRPTGFVIIRDKQ 564
Query: 505 SIINYIRKFITALKWDGWLSE---VEPRIDALSSSEER--VLIAKKKLW 548
S++ I+K++ AL W+ SE +D S E V I +KKLW
Sbjct: 565 SVVESIKKYLQALHWETVASEKVNTSSELDQDSEDGENNVVFIVQKKLW 613
|
|
| TAIR|locus:2150670 AT5G04060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1217 (433.5 bits), Expect = 8.0e-124, P = 8.0e-124
Identities = 245/555 (44%), Positives = 329/555 (59%)
Query: 4 PGSMDPTRFSGPLAGTAISMTCSKIKSSILKCP-KAS---P--NLIYQLKLKP--NLSLM 55
P P+ F+ + T + S +S + CP K + P N+ Y +L P NLS
Sbjct: 55 PSQSGPSNFANKIELTYRRTSVSIPESGVNVCPLKFNEYIPCHNVTYVQQLLPSLNLSRR 114
Query: 56 EHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVN 115
E ERHCPP E+R CLVPPPK YKIP+RWP SRD VW++N+ HTHLAE K Q+W+
Sbjct: 115 EELERHCPPLEQRLFCLVPPPKDYKIPIRWPTSRDYVWRSNVNHTHLAEVKGGQNWVHEQ 174
Query: 116 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS 175
G+ FPGGGTHF GA +YI L M + L + G + VLDVGCGVASF AYLL
Sbjct: 175 GQLWWFPGGGTHFKHGAPEYIQRLGNMTTNETGDLLSAG-VEQVLDVGCGVASFAAYLLP 233
Query: 176 HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 235
I MS AP D HENQIQFALERGI + + + TK++PYP+ SF++ HCSRCR+DW +
Sbjct: 234 LGIKTMSFAPKDGHENQIQFALERGIRAMISAIATKQMPYPAASFDMVHCSRCRVDWHEN 293
Query: 236 DGIXXXXXXXXXXPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIW 295
DG+ P GYFVYS+P AY D + IW+ + +L +MCWK++S+K QT IW
Sbjct: 294 DGVLMKEVNRLLRPNGYFVYSAPPAYRKDKDFPVIWDKLVNLTSAMCWKLISRKVQTAIW 353
Query: 296 AKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPAR 355
K +C K +C +D +W V ++ C+ ++ +K + L R
Sbjct: 354 VKEDDEACLRKNAELELITICGVEDVSKASWKVPLRDCVD--ISENRQQKPSSLTD---R 408
Query: 356 LTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAA 415
L++ P L E G++ +EF D W+ +V YW+ M K RNVMD N+ +GGFAA
Sbjct: 409 LSSYPTSLREKGISEDEFTLDTNFWREQVNQYWELMNV--NKTEVRNVMDTNAFIGGFAA 466
Query: 416 ALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFS--E 473
A+ +WVMNV P M+ L IY RGL G HDWCE FSTYPRTYDLLHA +F+ +
Sbjct: 467 AMNSYPLWVMNVVPATMNDTLSGIYQRGLTGAYHDWCEPFSTYPRTYDLLHADHLFTHYK 526
Query: 474 IEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDAL 533
I GC ED+++EMDR++RP+GF+IIRD+ SI++ +R W+ E++ +
Sbjct: 527 IYGEGCLLEDIMLEMDRIIRPQGFIIIRDEESIVSRVRDLAPKFLWEVEAHELQDKY--- 583
Query: 534 SSSEERVLIAKKKLW 548
E VL +KK W
Sbjct: 584 -KKTETVLFCRKKFW 597
|
|
| TAIR|locus:2063947 AT2G39750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1193 (425.0 bits), Expect = 2.8e-121, P = 2.8e-121
Identities = 237/501 (47%), Positives = 308/501 (61%)
Query: 56 EHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVN 115
E +ERHCP + NCLVPPPKGY+ P+ WP SRDEVW +N+PHT L E+K Q+W+ +
Sbjct: 207 ERFERHCPEKGKGLNCLVPPPKGYRQPIPWPKSRDEVWFSNVPHTRLVEDKGGQNWISRD 266
Query: 116 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS 175
K FPGGGT F GAD+Y L +M K SD + G +IR +DVGCGVASFGAYLLS
Sbjct: 267 KNKFKFPGGGTQFIHGADQY---LDQMSKMVSD-ITFGKHIRVAMDVGCGVASFGAYLLS 322
Query: 176 HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 235
D++ MS+AP DVHENQIQFALERG+P+ T+RL YPS++F+L HCSRCRI+W +
Sbjct: 323 RDVMTMSVAPKDVHENQIQFALERGVPAMAAAFATRRLLYPSQAFDLIHCSRCRINWTRD 382
Query: 236 DGIXXXXXXXXXXPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIW 295
DGI GGYF +++ Y H+P W M +L S+CWK+V K+ IW
Sbjct: 383 DGILLLEINRMLRAGGYFAWAAQPVYKHEPALEEQWTEMLNLTISLCWKLVKKEGYVAIW 442
Query: 296 AKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTG-LVP-WP 353
KP +N CYL R G++PPLC DDPD W +K CIS EKG G VP WP
Sbjct: 443 QKPFNNDCYLSREAGTKPPLCDESDDPDNVWYTNLKPCISRIP-----EKGYGGNVPLWP 497
Query: 354 ARLTAPPPRLEEVGVTT-----EEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNS 408
ARL PP RL+ + + E F + W + Y + +K +K RNV+DM +
Sbjct: 498 ARLHTPPDRLQTIKFDSYIARKELFKAESKYWNEIIGGYVRALKW--KKMKLRNVLDMRA 555
Query: 409 NLGGFAAALKDK--DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLH 466
GGFAAAL D D WV++V PV L +IYDRGL+G +HDWCE F TYPRTYD LH
Sbjct: 556 GFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDFLH 615
Query: 467 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEV 526
A +FS IE + C +L+EMDR+LRP G IRD +++ I++ A+ GW + +
Sbjct: 616 ASGLFS-IERKRCEMSTILLEMDRILRPGGRAYIRDSIDVMDEIQEITKAM---GWHTSL 671
Query: 527 EPRIDALSSSEERVLIAKKKL 547
+ +S R+L +K+L
Sbjct: 672 RDTSEGPHASY-RILTCEKRL 691
|
|
| TAIR|locus:2076264 AT3G10200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
Identities = 237/513 (46%), Positives = 315/513 (61%)
Query: 41 NLIYQLKLKP--NLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIP 98
N+ Y +L P NLS E ERHCPP E R CLVPPP YKIP+RWP SRD VW++N+
Sbjct: 87 NVTYVHQLLPSLNLSRREDLERHCPPLEHRLFCLVPPPNDYKIPIRWPTSRDYVWRSNVN 146
Query: 99 HTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRN 158
HTHLA+ K Q+W+ G+ FPGGGTHF GA +YI L M+ + L + G ++
Sbjct: 147 HTHLAQVKGGQNWVHEQGQFWWFPGGGTHFKHGAAEYIQRLGNMMTNETGDLRSAGVVQ- 205
Query: 159 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSR 218
VLDVGCGVASF AYLL I +S AP D HENQIQFALERGI + + + TK+LPYP+
Sbjct: 206 VLDVGCGVASFAAYLLPLGIQTISFAPKDGHENQIQFALERGIGAMISAVATKQLPYPAA 265
Query: 219 SFELAHCSRCRIDWLQRDGIXXXXXXXXXXPGGYFVYSSPEAYAHDPENRRIWNAMYDLL 278
SFE+ HCSRCR+DW DGI P G+FVYSSP AY D E IW+ + +L
Sbjct: 266 SFEMVHCSRCRVDWHTNDGILLKEVHRLLRPNGFFVYSSPPAYRKDKEYPMIWDKLVNLT 325
Query: 279 KSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYS 338
+MCWK++S+K QT IW K C ++ LC +D +W V +K C+ S
Sbjct: 326 SAMCWKLISRKVQTAIWIKEEKEVCLKQKAELKLISLCDVEDVLKPSWKVPLKDCVQ-IS 384
Query: 339 AKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKN 398
+ E+ + L RL+A P L ++G++ +E+ D W+ +V YW+ M +
Sbjct: 385 GQTE-ERPSSLAE---RLSAYPATLRKIGISEDEYTSDTVFWREQVNHYWRLMNV--NET 438
Query: 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTY 458
RNVMDMN+ +GGFAAA+ VWVMN+ P M+ L I++RGL G HDWCE+FSTY
Sbjct: 439 EVRNVMDMNAFIGGFAAAMNSYPVWVMNIVPATMNDTLSGIFERGLNGAFHDWCEAFSTY 498
Query: 459 PRTYDLLHAWKVFSEIEER---GCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFIT 515
PRTYDL+H+ VFS + GC ED+++EMDR++RP+GFVIIRD+ II+ IR
Sbjct: 499 PRTYDLVHSDHVFSHYNKSYGDGCLLEDIMLEMDRIVRPQGFVIIRDEEYIISRIRGLAP 558
Query: 516 ALKWDGWLSEVEPRIDALSSSEERVLIAKKKLW 548
W+ E+E + ++ S VL +K+ W
Sbjct: 559 KFLWEVETHELENKDKKITES---VLFCRKRFW 588
|
|
| TAIR|locus:2153704 AT5G06050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
Identities = 225/504 (44%), Positives = 313/504 (62%)
Query: 56 EHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVN 115
E +ER+CP NC VP P+GY+ P+ WP SRDEVW N+PHT L E+K Q+W+
Sbjct: 179 ERFERNCPNDGMGLNCTVPIPQGYRSPIPWPRSRDEVWFNNVPHTKLVEDKGGQNWIYKE 238
Query: 116 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS 175
+K FPGGGT F GAD+Y+ +++M+ P ++ G + R VLD+GCGVASFGAYL+S
Sbjct: 239 NDKFKFPGGGTQFIHGADQYLDQISQMI--PD--ISFGNHTRVVLDIGCGVASFGAYLMS 294
Query: 176 HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 235
+++ MS+AP DVHENQIQFALERG+P+ + T+RL YPS++F+L HCSRCRI+W +
Sbjct: 295 RNVLTMSIAPKDVHENQIQFALERGVPAMVAAFTTRRLLYPSQAFDLVHCSRCRINWTRD 354
Query: 236 DGIXXXXXXXXXXPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIW 295
DGI GGYFV+++ Y H+ W M +L +CW +V K+ IW
Sbjct: 355 DGILLLEVNRMLRAGGYFVWAAQPVYKHEKALEEQWEEMLNLTTRLCWVLVKKEGYIAIW 414
Query: 296 AKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPAR 355
KP++N+CYL R G PPLC+S+DDPD W V +KACI+ + G L PWPAR
Sbjct: 415 QKPVNNTCYLSRGAGVSPPLCNSEDDPDNVWYVDLKACITRIEENGY---GANLAPWPAR 471
Query: 356 LTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQM-----KTVAQKNT-FRNVMDMNSN 409
L PP RL+ + + + +++ + + + YWK++ + K RNV+DM +
Sbjct: 472 LLTPPDRLQTIQIDSYIARKELFVAESK---YWKEIISNYVNALHWKQIGLRNVLDMRAG 528
Query: 410 LGGFAAALKDK--DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHA 467
GGFAAAL + D WV+NV PV L +IYDRGL+G +HDWCE F TYPRTYDLLHA
Sbjct: 529 FGGFAAALAELKVDCWVLNVIPVSGPNTLPVIYDRGLLGVMHDWCEPFDTYPRTYDLLHA 588
Query: 468 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVE 527
+FS IE + C+ +++EMDR+LRP G V IRD ++ + +++ A++W L E
Sbjct: 589 AGLFS-IERKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQEIGNAMRWHTSLRETA 647
Query: 528 PRIDALSSSEERVLIAKKKLWDEE 551
S RVL+ +K+ E
Sbjct: 648 EG----PHSSYRVLLCEKRFESSE 667
|
|
| TAIR|locus:2195955 AT1G77260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
Identities = 228/530 (43%), Positives = 322/530 (60%)
Query: 25 CSKIKSSILKCPKASPNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVR 84
C K K + C ++K N E+YERHCP ++ +CL+PPP GYK P++
Sbjct: 146 CDKTKIDYIPCLDNEE----EIKRLNNTDRGENYERHCP--KQSLDCLIPPPDGYKKPIQ 199
Query: 85 WPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLK 144
WP SRD++W N+PHT L E+K Q+W+ +K FPGGGT F GAD+Y+ +++M+
Sbjct: 200 WPQSRDKIWFNNVPHTRLVEDKGGQNWIRREKDKFVFPGGGTQFIHGADQYLDQISQMI- 258
Query: 145 FPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPST 204
P + G R LD+GCGVASFGA+L+ + +S+AP DVHENQIQFALERG+P+
Sbjct: 259 -PD--ITFGSRTRVALDIGCGVASFGAFLMQRNTTTLSVAPKDVHENQIQFALERGVPAM 315
Query: 205 LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGIXXXXXXXXXXPGGYFVYSSPEAYAHD 264
+ V T+RL YPS+SFE+ HCSRCRI+W + DGI GGYFV+++ Y H+
Sbjct: 316 VAVFATRRLLYPSQSFEMIHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHE 375
Query: 265 PENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDV 324
+ W M DL +CW+++ K+ +W KP++NSCY+ R G++PPLC DDDPD
Sbjct: 376 DNLQEQWKEMLDLTNRICWELIKKEGYIAVWRKPLNNSCYVSREAGTKPPLCRPDDDPDD 435
Query: 325 TWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVG----VTTEEFHE-DIGI 379
W V MK CI+ + G + WPARL PP RL+ + ++ +E + +
Sbjct: 436 VWYVDMKPCITRLPDNGY---GANVSTWPARLHDPPERLQSIQMDAYISRKEIMKAESRF 492
Query: 380 WQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMSARLK 437
W V Y + + K RNV+DM + GGFAAAL D D WVMN+ PV L
Sbjct: 493 WLEVVESYVRVFRWKEFK--LRNVLDMRAGFGGFAAALNDLGLDCWVMNIVPVSGFNTLP 550
Query: 438 IIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGF 497
+IYDRGL G +HDWCE F TYPRTYDL+HA +FS +E++ C+ ++++EMDRMLRP G
Sbjct: 551 VIYDRGLQGAMHDWCEPFDTYPRTYDLIHAAFLFS-VEKKRCNITNIMLEMDRMLRPGGH 609
Query: 498 VIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKKL 547
V IRD S+++ +++ A+ GW + V + +S R+LI K++
Sbjct: 610 VYIRDSLSLMDQLQQVAKAI---GWTAGVHDTGEGPHASV-RILICDKRI 655
|
|
| TAIR|locus:2196651 AT1G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1141 (406.7 bits), Expect = 9.1e-116, P = 9.1e-116
Identities = 231/515 (44%), Positives = 317/515 (61%)
Query: 53 SLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWM 112
++M++ ERHCP + CL+PPP YKIP +WP SRD W NIPH L+ EK+ Q+W+
Sbjct: 135 NMMKYRERHCPSKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSIEKAIQNWI 194
Query: 113 VVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAY 172
V GE+ FPGGGT F GAD YI +AR++ P L +G IR +D GCGVASFGAY
Sbjct: 195 QVEGERFRFPGGGTMFPRGADAYIDDIARLI--P---LTDGA-IRTAIDTGCGVASFGAY 248
Query: 173 LLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232
LL DI+AMS AP D HE Q+QFALERG+P+ +G++G++RLPYP+R+F+LAHCSRC I W
Sbjct: 249 LLKRDIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPW 308
Query: 233 LQRDGIXXXXXXXXXXPGGYFVYSSP--------EAYAHDPEN-RRIWNAMYDLLKSMCW 283
Q DG+ PGGY++ S P + + E+ ++ +++ D +S+CW
Sbjct: 309 FQNDGLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQEQDSIEDAARSLCW 368
Query: 284 KIVSKKDQTVIWAKPISN-SCY-LKRVPGSRPPLCSSDDDPDVTWNVLMKACISPY-SAK 340
K V++K IW KPI++ C LKRV + PPLCS D PD W +++C++P A
Sbjct: 369 KKVTEKGDLSIWQKPINHVECNKLKRVHKT-PPLCSKSDLPDFAWYKDLESCVTPLPEAN 427
Query: 341 MHHE-KGTGLVPWPARLTAPPPRLEEVG-----VTTEEFHEDIGIWQVRVVDYWKQMKTV 394
E G L WP R A PPR+ +G + E+F ED +W+ R+ Y+KQ+
Sbjct: 428 SSDEFAGGALEDWPNRAFAVPPRI--IGGTIPDINAEKFREDNEVWKERI-SYYKQIMPE 484
Query: 395 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSAR-LKIIYDRGLIGTVHDWCE 453
+ FRN+MDMN+ LGGFAAA+ WVMNV PV + L +I++RG IGT DWCE
Sbjct: 485 LSRGRFRNIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFERGFIGTYQDWCE 544
Query: 454 SFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKF 513
FSTYPRTYDL+HA +FS E R C +L+EMDR+LRPEG V+ RD ++ I+
Sbjct: 545 GFSTYPRTYDLIHAGGLFSIYENR-CDVTLILLEMDRILRPEGTVVFRDTVEMLTKIQSI 603
Query: 514 ITALKWDGWLSEVEPRIDALSSSEERVLIAKKKLW 548
++W + + E + E++L+A K W
Sbjct: 604 TNGMRWKSRILDHERG----PFNPEKILLAVKSYW 634
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q8VZV7 | PMT9_ARATH | 2, ., 1, ., 1, ., - | 0.7805 | 0.9405 | 0.8529 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 555 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 0.0 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 7e-09 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 8e-05 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 2e-04 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 0.004 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 0.004 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 810 bits (2094), Expect = 0.0
Identities = 283/504 (56%), Positives = 344/504 (68%), Gaps = 13/504 (2%)
Query: 46 LKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEE 105
+K + MEH ERHCPP E + CLVPPP GYK P+ WP SRD+VW AN+PHT LAEE
Sbjct: 12 IKFLLSRERMEHRERHCPPSEEKLRCLVPPPDGYKTPIPWPKSRDKVWYANVPHTKLAEE 71
Query: 106 KSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCG 165
K Q+W+ V G+K FPGGGT F GAD YI LA+M+ GG +R LDVGCG
Sbjct: 72 KGGQNWVKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPDI----AWGGRVRTALDVGCG 127
Query: 166 VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHC 225
VASFGAYLLS D++ MS AP DVHE Q+QFALERG+P+ LGVLGT+RLPYPSRSF++AHC
Sbjct: 128 VASFGAYLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRRLPYPSRSFDMAHC 187
Query: 226 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN-RRIWNAMYDLLKSMCWK 284
SRC I W DGILLLE+DR+LRPGGYFV S P YA D E+ + W AM L KS+CWK
Sbjct: 188 SRCLIPWHANDGILLLEVDRVLRPGGYFVLSGPPVYARDEEDLQEEWKAMEALAKSLCWK 247
Query: 285 IVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHE 344
+V+KK IW KP++NSCY KR PG +PPLC DDPD W V M+ACI+P H
Sbjct: 248 LVAKKGDIAIWQKPVNNSCYNKREPGKKPPLCKDSDDPDAAWYVPMEACITPLPEVSHEV 307
Query: 345 KGTGLVPWPARLTAPPPRLEEV---GVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFR 401
G L WP RLTA PPRL GV+ E F D +W+ RV Y + +K + K R
Sbjct: 308 GGGWLEKWPERLTAVPPRLASGQIGGVSAEAFKADTELWKRRVSKYKRLLKLLIDKGRVR 367
Query: 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRT 461
NVMDMN+ GGFAAAL D VWVMNV PV L +IYDRGLIG HDWCE FSTYPRT
Sbjct: 368 NVMDMNAGFGGFAAALIDDPVWVMNVVPVDSPDTLPVIYDRGLIGIYHDWCEPFSTYPRT 427
Query: 462 YDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDG 521
YDLLHA +FS ++R C+ ED+L+EMDR+LRP G VIIRD +++ ++K A++W+
Sbjct: 428 YDLLHADHLFSLYKKR-CNLEDILLEMDRILRPGGAVIIRDDVDVLDKVKKIAKAMRWEV 486
Query: 522 WLSEVEPRIDALSSSEERVLIAKK 545
+++ E E++LIA+K
Sbjct: 487 RITDTEDG----PHDPEKILIAQK 506
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 7e-09
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 160 LDVGCGVASFGAYL---LSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLPY 215
LDVGCG L + + D+ + A +R V+G + LP+
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGV-----DLSPEMLALARKRAPRKF--VVGDAEDLPF 53
Query: 216 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV 254
P SF++ S + L L E+ R+L+PGG V
Sbjct: 54 PDESFDVVVSSLV-LHHLPDPERALREIARVLKPGGKLV 91
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 8e-05
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 16/104 (15%)
Query: 160 LDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER------GIPSTLGVLG 209
LD+GCG + LL + + D+ ++ A ER + +
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGV-----DISPAALEAAAERLAALGLLDAVRVRLDV 55
Query: 210 TKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYF 253
+ SF++ S + L +L L RLL+PGG
Sbjct: 56 LDAIDLDPGSFDVVVASNV-LHHLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 159 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLG-TKRLPYPS 217
VLD+GCG LL ND+ + A + + + G ++LP
Sbjct: 38 VLDIGCGTGYLTRALLKR-FPQAEFIANDISAGMLAQAKTKLSENVQFICGDAEKLPLED 96
Query: 218 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257
SF+L + + W L EL R+L+PGG +S+
Sbjct: 97 SSFDLIVSNLA-LQWCDDLSQALSELARVLKPGGLLAFST 135
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.004
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 159 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLP 214
+LD+GCG L +++ D+ + ++ A ER G V + LP
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGV--DISKEALELAKERLRDKGPKVRFVVADARDLP 58
Query: 215 YPSRSFELAHCSRCRIDWLQRDGILLL--ELDRLLRPGG 251
+ SF+L C+ +D+L + L E RLLRPGG
Sbjct: 59 FEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.004
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 14/108 (12%)
Query: 158 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE---RGIPSTLGVL--- 208
VLD+GCG + L S + + D+ ++ A + + + VL
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGV-----DISPVALELARKAAAALLADNVEVLKGD 55
Query: 209 GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 256
+ P SF++ ++ L E RLL+PGG V +
Sbjct: 56 AEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 555 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.89 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.71 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.69 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.68 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.67 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.59 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.57 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.56 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.54 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.53 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.52 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.51 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.5 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.47 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.46 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.45 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.44 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.41 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.41 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.4 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.4 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.39 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.39 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.38 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.38 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.37 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.36 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.35 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.34 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.33 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.32 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.32 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.31 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.3 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.3 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.29 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.29 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.26 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.26 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.22 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.21 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.21 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.21 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.2 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.19 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.18 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.17 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.17 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.16 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.15 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.15 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.14 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.14 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.14 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.14 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.14 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.13 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.11 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.11 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.11 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.11 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.11 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.1 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.09 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.09 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.09 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.08 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.08 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.08 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.07 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.06 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.05 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.04 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.04 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.03 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.03 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.03 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.02 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.02 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.01 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.0 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.99 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.99 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.99 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.98 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.98 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.97 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.97 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.96 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.96 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.95 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.93 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.91 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.91 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.89 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.88 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.88 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.84 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.83 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.83 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.83 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.81 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.8 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.79 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.78 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.78 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.74 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.73 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.72 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.69 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.65 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.65 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.64 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.62 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.61 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.59 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.56 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.56 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.55 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.54 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.52 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.5 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.5 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.49 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.47 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.46 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.45 | |
| PLN02366 | 308 | spermidine synthase | 98.44 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.44 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.44 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.43 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.43 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.43 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.43 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.4 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.4 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.4 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.39 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.38 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.38 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.34 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.28 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.27 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.27 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.26 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.24 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.24 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.23 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.22 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.21 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.18 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.17 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.17 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.17 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.16 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.15 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.1 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.08 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.08 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.08 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.07 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.07 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.04 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.04 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.04 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.01 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.01 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 97.97 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.95 | |
| PLN02476 | 278 | O-methyltransferase | 97.94 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.88 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.87 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.84 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.83 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.82 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.8 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.77 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.76 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 97.73 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.7 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.67 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.67 | |
| PLN02823 | 336 | spermine synthase | 97.67 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.66 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.63 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 97.63 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.63 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.58 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.51 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.48 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.48 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.47 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.42 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.41 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.4 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 97.38 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.35 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.31 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.3 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.3 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 97.25 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.25 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.21 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.21 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.17 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.16 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.15 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 97.12 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.07 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.06 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.06 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 97.06 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.05 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.01 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 97.0 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 96.99 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 96.99 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.99 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 96.97 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 96.96 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 96.94 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.93 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 96.92 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.91 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.89 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 96.83 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.79 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 96.78 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 96.77 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 96.76 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 96.66 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.62 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.61 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.6 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 96.59 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 96.58 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 96.58 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 96.56 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.56 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 96.55 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.54 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 96.54 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 96.54 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.53 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 96.51 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.5 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 96.48 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 96.48 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 96.45 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 96.43 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 96.4 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.39 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 96.36 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 96.36 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 96.34 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 96.32 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 96.31 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 96.26 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.23 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 96.22 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 96.2 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 96.15 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.14 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.13 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.07 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.03 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.03 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 96.03 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 96.01 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 95.98 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 95.93 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 95.9 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 95.9 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 95.81 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 95.79 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 95.78 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 95.68 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 95.68 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 95.61 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 95.61 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 95.53 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 95.51 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 95.48 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 95.45 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 95.33 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 95.33 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 95.3 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 95.29 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 95.22 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 95.19 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 95.18 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 95.16 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 95.14 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.01 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 94.91 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 94.86 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 94.84 | |
| PRK04266 | 226 | fibrillarin; Provisional | 94.81 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 94.79 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 94.78 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 94.73 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 94.66 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 94.56 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 94.54 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 94.53 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 94.47 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 94.4 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 94.4 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 94.34 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 94.32 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 94.29 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 94.21 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 94.21 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 94.14 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 94.02 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 93.83 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 93.71 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 93.68 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 93.63 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 93.59 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 93.57 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 93.57 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 93.43 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 93.37 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 93.31 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 93.31 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 93.27 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 93.19 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 93.13 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 93.1 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 93.02 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 92.72 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 92.69 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 92.42 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 92.33 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 91.81 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 91.81 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 91.71 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 91.68 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 91.4 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 90.73 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 90.56 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 90.41 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 90.37 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 90.24 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 90.23 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 90.12 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 89.99 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 89.94 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 89.8 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 89.71 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 89.56 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 89.03 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 88.9 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 88.8 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 88.49 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 88.35 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 88.3 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 88.23 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 87.89 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 87.68 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 87.67 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 87.67 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 87.62 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 87.55 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 87.26 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 87.21 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 87.03 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 86.84 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 86.41 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 86.32 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 86.17 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 86.02 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 85.98 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 85.97 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 85.86 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 85.71 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 85.46 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 85.32 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 84.14 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 84.09 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 84.06 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 82.99 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 80.86 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-156 Score=1233.82 Aligned_cols=502 Identities=54% Similarity=1.018 Sum_probs=474.2
Q ss_pred CccCCCCCChhhhhhhhcCCCccccccccCCCCCCCCCCCccCCCCCCCCCCCCCCCCchhhhhccCCCCccccccccch
Q 008748 31 SILKCPKASPNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQH 110 (555)
Q Consensus 31 ~~~pc~~~~~~~~~~~~~~~~~~~~~~~er~C~~~~~~~~Cl~~~p~gY~~P~~Wp~srd~~W~~n~~~~~L~~~k~~~~ 110 (555)
|||||+|++.+ .+ ...++++++|||||||+.++++.||||+|+||+.|++||+|||++|++|+||++|+++|+.|+
T Consensus 1 dy~PC~D~~~~--~~--~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qn 76 (506)
T PF03141_consen 1 DYIPCLDNSRA--IK--FLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQN 76 (506)
T ss_pred CCcCCCCHHHH--Hh--hccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhccccc
Confidence 79999444443 22 224789999999999998899999999999999999999999999999999999999999999
Q ss_pred hhhhcCceeeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcCCCccccCChhhhhH
Q 008748 111 WMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHE 190 (555)
Q Consensus 111 W~~~~~e~~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~V~~vdis~~dls~ 190 (555)
||+.+|+.+.|||+|++|..|+++|++.|.++++.. ..++..+++||||||+|+|+++|++++|+++.+++.+.++
T Consensus 77 Wv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~----~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~ 152 (506)
T PF03141_consen 77 WVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLI----KWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHE 152 (506)
T ss_pred ceeecCCEEEeCCCCccccCCHHHHHHHHHHHhhcc----ccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCc
Confidence 999999999999999999999999999999999852 3457789999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCC-CCChhhHH
Q 008748 191 NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY-AHDPENRR 269 (555)
Q Consensus 191 a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~-~~~~e~~~ 269 (555)
+++|+|.+||.++.+.+...++|||++++||+|||+.|.+.|..+.+.+|.|++|+|||||+|+++.|+.+ ...++..+
T Consensus 153 ~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~ 232 (506)
T PF03141_consen 153 AQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEE 232 (506)
T ss_pred hhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHH
Confidence 99999999999999998889999999999999999999999999989999999999999999999999998 44556678
Q ss_pred HHHHHHHHHHhcCcEEEEEeeceEEeecCCCchhhhccCCCCCCCCCCCCCCCCccccccccccccccccccccccCCCC
Q 008748 270 IWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGL 349 (555)
Q Consensus 270 ~~~~l~~l~~~~gw~vv~~~~~~~iw~KPl~~~c~~~r~~~~~p~lc~~~~~~~~~wy~~L~~Ci~~~~~~~~~~~~~~~ 349 (555)
+|++++++++++||+++.++++++|||||.+++||..|+..+.|++|++++++|++||++|++|||++|+..+..+|+++
T Consensus 233 ~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~ 312 (506)
T PF03141_consen 233 EWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWL 312 (506)
T ss_pred HHHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCC
Confidence 99999999999999999999999999999999999999887899999988999999999999999999998777788999
Q ss_pred CCCCCCCCCCCCCccc---cCCChhhHhHhHhhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCceEEE
Q 008748 350 VPWPARLTAPPPRLEE---VGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMN 426 (555)
Q Consensus 350 ~~~p~rl~~~~~~~~~---~~~~~~~~~~d~~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmn 426 (555)
++||+||+++|+||.. .|+++|+|++|+++|+++|++||++++..|++++||||||||||||||||||+++||||||
T Consensus 313 ~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMN 392 (506)
T PF03141_consen 313 PKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMN 392 (506)
T ss_pred CCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEE
Confidence 9999999999999998 7999999999999999999999998887899999999999999999999999999999999
Q ss_pred ecccCCCCchhHHhhccccchhcccccCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecchhH
Q 008748 427 VAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSI 506 (555)
Q Consensus 427 v~p~~~~~~l~~i~~rgl~g~~~~~ce~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~~ 506 (555)
|||+.++|||+|||||||||+||||||+|||||||||||||++||| .+++||+|++|||||||||||||++||||++++
T Consensus 393 VVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs-~~~~rC~~~~illEmDRILRP~G~~iiRD~~~v 471 (506)
T PF03141_consen 393 VVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFS-LYKDRCEMEDILLEMDRILRPGGWVIIRDTVDV 471 (506)
T ss_pred ecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhh-hhcccccHHHHHHHhHhhcCCCceEEEeccHHH
Confidence 9999999999999999999999999999999999999999999999 567789999999999999999999999999999
Q ss_pred HHHHHHHHhhcCccceecccccccccCCCCCceEEEEEe
Q 008748 507 INYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKK 545 (555)
Q Consensus 507 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k 545 (555)
+++|++|+++|||+++ ++|+|+++ .++||||||||
T Consensus 472 l~~v~~i~~~lrW~~~--~~d~e~g~--~~~EkiL~~~K 506 (506)
T PF03141_consen 472 LEKVKKIAKSLRWEVR--IHDTEDGP--DGPEKILICQK 506 (506)
T ss_pred HHHHHHHHHhCcceEE--EEecCCCC--CCCceEEEEEC
Confidence 9999999999999995 56778876 56999999998
|
; GO: 0008168 methyltransferase activity |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-23 Score=224.45 Aligned_cols=154 Identities=20% Similarity=0.351 Sum_probs=128.1
Q ss_pred hHHHHHHHHHHhhhhcc----CCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhccccchhccc-c
Q 008748 379 IWQVRVVDYWKQMKTVA----QKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDW-C 452 (555)
Q Consensus 379 ~w~~~v~~y~~~~~~~~----~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl~g~~~~~-c 452 (555)
.++.-+++|...|...+ ..+.||.++|++||+|+|||.|+++.|-+|..+|.+.+ ++.++++|||+..++.-- -
T Consensus 93 ~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s 172 (506)
T PF03141_consen 93 MFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGS 172 (506)
T ss_pred cccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhcc
Confidence 34556667765554433 55889999999999999999999999999999999876 999999999986666554 5
Q ss_pred cCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEe----------cchhHHHHHHHHHhhcCccce
Q 008748 453 ESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR----------DKSSIINYIRKFITALKWDGW 522 (555)
Q Consensus 453 e~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r----------d~~~~~~~~~~~~~~~~w~~~ 522 (555)
.+++.+.|+|||+|++++...+..+ -..+|+|+|||||||||+|+. |..+.++++++++++|||+.-
T Consensus 173 ~rLPfp~~~fDmvHcsrc~i~W~~~---~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~v 249 (506)
T PF03141_consen 173 QRLPFPSNAFDMVHCSRCLIPWHPN---DGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKV 249 (506)
T ss_pred ccccCCccchhhhhcccccccchhc---ccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788888999999999999977665 357999999999999999975 456889999999999999972
Q ss_pred ecccccccccCCCCCceEEEEEecc
Q 008748 523 LSEVEPRIDALSSSEERVLIAKKKL 547 (555)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~l~~~k~~ 547 (555)
..+..+.|.||+.
T Consensus 250 ------------a~~~~~aIwqKp~ 262 (506)
T PF03141_consen 250 ------------AEKGDTAIWQKPT 262 (506)
T ss_pred ------------eeeCCEEEEeccC
Confidence 1234599999974
|
; GO: 0008168 methyltransferase activity |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-17 Score=177.61 Aligned_cols=307 Identities=15% Similarity=0.197 Sum_probs=168.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCC--CCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK--RLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~--~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|||||||+|.++..|++. .|+++|+++.++..+.. ......++.+.++|+. .+++++++||+|+|.. +++
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~--~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~-~l~ 114 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES--INGHYKNVKFMCADVTSPDLNISDGSVDLIFSNW-LLM 114 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH--HhccCCceEEEEecccccccCCCCCCEEEEehhh-hHH
Confidence 358999999999999999864 68899988887754321 1122346788888874 5678888999999888 577
Q ss_pred cccch--HHHHHHHHhhcCCCcEEEEEcCCCCCC-------ChhhHHHHHHHHHHHHhcCcEEEEEeec--eEEeecCCC
Q 008748 232 WLQRD--GILLLELDRLLRPGGYFVYSSPEAYAH-------DPENRRIWNAMYDLLKSMCWKIVSKKDQ--TVIWAKPIS 300 (555)
Q Consensus 232 ~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~~-------~~e~~~~~~~l~~l~~~~gw~vv~~~~~--~~iw~KPl~ 300 (555)
|..+. ..++.++.|+|||||++++........ ++..........+++.+.+|........ ...+.+++.
T Consensus 115 ~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 194 (475)
T PLN02336 115 YLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGNSFELSLVGCKCIG 194 (475)
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCCEEEEEEEEeechh
Confidence 77663 679999999999999999975332111 1111112335566788888766533221 122223332
Q ss_pred chhhhccCCCCCCCCCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCccccCCChhhHhHhHhhH
Q 008748 301 NSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIW 380 (555)
Q Consensus 301 ~~c~~~r~~~~~p~lc~~~~~~~~~wy~~L~~Ci~~~~~~~~~~~~~~~~~~p~rl~~~~~~~~~~~~~~~~~~~d~~~w 380 (555)
+.-. ... +.--++......+..-...+..++. |+.-.++.|.. .+.|....-.+
T Consensus 195 ~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~y~~~~i~~----~~~f~g~~~~v 248 (475)
T PLN02336 195 AYVK--NKK-NQNQICWLWQKVSSTNDKGFQRFLD-------------------NVQYKSSGILR----YERVFGEGFVS 248 (475)
T ss_pred hhhh--ccC-CcceEEEEEEeecCCcchhHHHHhh-------------------hhccccccHHH----HHHHhCCCCCC
Confidence 2111 100 0000111100000001122222221 12111221211 01111000000
Q ss_pred HHHH---HHHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc--cc---cc-hhcc
Q 008748 381 QVRV---VDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR--GL---IG-TVHD 450 (555)
Q Consensus 381 ~~~v---~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r--gl---~g-~~~~ 450 (555)
...| ......+. + ..-..|+|++||.|+++..|.+..- .+|+=++-+ ..|.+.-++ |+ +- ...|
T Consensus 249 ~~~v~~te~l~~~~~--~--~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d 322 (475)
T PLN02336 249 TGGLETTKEFVDKLD--L--KPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAIGRKCSVEFEVAD 322 (475)
T ss_pred CchHHHHHHHHHhcC--C--CCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhhcCCCceEEEEcC
Confidence 0111 11112221 2 2345799999999999887765421 245555543 444433222 21 11 1234
Q ss_pred cccCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 451 WCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 451 ~ce~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+.+. +.-+.+||+|.+.+.+-.+. +...+|-|+-|+|+|||.+++.|
T Consensus 323 ~~~~-~~~~~~fD~I~s~~~l~h~~----d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 323 CTKK-TYPDNSFDVIYSRDTILHIQ----DKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred cccC-CCCCCCEEEEEECCcccccC----CHHHHHHHHHHHcCCCeEEEEEE
Confidence 4332 21235899999988876443 35789999999999999999875
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=163.11 Aligned_cols=157 Identities=24% Similarity=0.414 Sum_probs=112.7
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCC--CCCCchhhhhccCCCCccccccccchhhhhcCceeeeCCCCCCCCccHHHHHH
Q 008748 60 RHCPPPERRYNCLVPPPKGYKIPVR--WPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYIL 137 (555)
Q Consensus 60 r~C~~~~~~~~Cl~~~p~gY~~P~~--Wp~srd~~W~~n~~~~~L~~~k~~~~W~~~~~e~~~F~~~g~~f~~~a~~y~~ 137 (555)
=+|++ +|+|| .+++||..-++ -+++++ +++..-|..+ +..|.+.| +|....+...+
T Consensus 19 ~~C~~-~h~fd---~a~~Gy~~ll~~~~~~~~~---------------~~d~~~~~~a--r~~fl~~g-~y~~l~~~i~~ 76 (272)
T PRK11088 19 WICPQ-NHQFD---CAKEGYVNLLPVQHKRSKD---------------PGDNKEMMQA--RRAFLDAG-HYQPLRDAVAN 76 (272)
T ss_pred EEcCC-CCCCc---cccCceEEeccccccCCCC---------------CCcCHHHHHH--HHHHHHCC-ChHHHHHHHHH
Confidence 38998 89999 99999984432 233322 3455555555 45666554 67666655555
Q ss_pred HHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC-------CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCC
Q 008748 138 ALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT 210 (555)
Q Consensus 138 ~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~-------~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~ 210 (555)
.+.+.+. ....+|||+|||+|.++..|++. .++|+|+++ .+++.|.++..++.+.++|.
T Consensus 77 ~l~~~l~---------~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~-----~~l~~A~~~~~~~~~~~~d~ 142 (272)
T PRK11088 77 LLAERLD---------EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISK-----VAIKYAAKRYPQVTFCVASS 142 (272)
T ss_pred HHHHhcC---------CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCH-----HHHHHHHHhCCCCeEEEeec
Confidence 5554443 22357999999999999988753 245666555 44566666667889999999
Q ss_pred CCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 211 KRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 211 ~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
..+|+++++||+|++.++ ...+.++.|+|||||+|+++.|..
T Consensus 143 ~~lp~~~~sfD~I~~~~~--------~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 143 HRLPFADQSLDAIIRIYA--------PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred ccCCCcCCceeEEEEecC--------CCCHHHHHhhccCCCEEEEEeCCC
Confidence 999999999999997653 124789999999999999998875
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.3e-17 Score=160.84 Aligned_cols=102 Identities=24% Similarity=0.381 Sum_probs=77.9
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
++.+|||+|||||.++..++++ .|+++|+++.|+..+..+.......++.+.++|++.+|+++++||+|+|++ .
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f-g 125 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF-G 125 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES--
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh-h
Confidence 3469999999999999998763 688999999998777755554434589999999999999999999999999 5
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
++..+|....++|+.|+|||||.+++..
T Consensus 126 lrn~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 126 LRNFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp GGG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 8888999999999999999999999754
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.3e-16 Score=154.67 Aligned_cols=102 Identities=21% Similarity=0.344 Sum_probs=86.3
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
++.+|||||||||-++..+++. .|+++|+++.|+..+..+........+.|+++|++.|||+|++||+|.+++ .+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~f-gl 129 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISF-GL 129 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeee-hh
Confidence 4579999999999999999864 688888888888666644332222338899999999999999999999999 69
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
+++++.+.+|+|++|||||||.+++..
T Consensus 130 rnv~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 130 RNVTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred hcCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 999999999999999999999988754
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-14 Score=145.70 Aligned_cols=102 Identities=15% Similarity=0.174 Sum_probs=84.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHH---HcCCCeEEEEeCCCCCCCCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFAL---ERGIPSTLGVLGTKRLPYPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~---~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~ 227 (555)
..+|||+|||+|.++..|++. .|+++|+++.|+..+..+... ....++.+.++|+..+|+++++||+|++++
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 153 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY 153 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence 468999999999999888752 688999998888766533211 113468899999999999999999999888
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
++|+.+++..+++|+.|+|||||++++++.
T Consensus 154 -~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 154 -GLRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred -ccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 588899999999999999999999998763
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.3e-14 Score=148.19 Aligned_cols=135 Identities=19% Similarity=0.356 Sum_probs=102.2
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
++.+|||||||+|.++..|++. .|+++|+++.++..+.. .+.+.+ .++.+.++|+..+|+++++||+|++.. .
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~-~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~-~ 195 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANA-LAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSME-S 195 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEEcCcccCCCCCCCccEEEECC-c
Confidence 4568999999999999998863 78899998888766653 333334 358899999999999999999999887 5
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCC--C-----ChhhHH---------------HHHHHHHHHHhcCcEEEE
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA--H-----DPENRR---------------IWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~--~-----~~e~~~---------------~~~~l~~l~~~~gw~vv~ 287 (555)
++|..+...+++++.|+|||||.|++++..... . ...... .-.++.+++++.||..+.
T Consensus 196 ~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~ 275 (340)
T PLN02244 196 GEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIK 275 (340)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeE
Confidence 888889899999999999999999997642110 0 001000 123777888999998876
Q ss_pred Eeec
Q 008748 288 KKDQ 291 (555)
Q Consensus 288 ~~~~ 291 (555)
.++.
T Consensus 276 ~~d~ 279 (340)
T PLN02244 276 TEDW 279 (340)
T ss_pred eeeC
Confidence 5543
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.5e-15 Score=123.83 Aligned_cols=90 Identities=27% Similarity=0.514 Sum_probs=71.2
Q ss_pred EEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEeccccccccc
Q 008748 160 LDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 234 (555)
Q Consensus 160 LDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~ 234 (555)
||+|||+|.++..|++. .++++|+++ .+++.++++. ..+.+..+|...+|+++++||+|++.. +++|.+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~-----~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~-~~~~~~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE-----EMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNS-VLHHLE 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H-----HHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEES-HGGGSS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH-----HHHHHHHhcccccCchheeehHHhCcccccccccccccc-ceeecc
Confidence 89999999999999875 455665554 4455555553 335689999999999999999999888 688888
Q ss_pred chHHHHHHHHhhcCCCcEEEE
Q 008748 235 RDGILLLELDRLLRPGGYFVY 255 (555)
Q Consensus 235 d~~~~L~el~RvLkPGG~lvi 255 (555)
+...+++|+.|+|||||+++|
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 999999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.8e-14 Score=142.31 Aligned_cols=161 Identities=17% Similarity=0.226 Sum_probs=109.8
Q ss_pred CCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCe
Q 008748 127 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPS 203 (555)
Q Consensus 127 ~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v 203 (555)
.+.++.......+.+.+.. .+..+|||||||+|..+..|+.. .|+++|+++.++..+..+... ...+
T Consensus 32 ~~~~gg~~~~~~~l~~l~l--------~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i 101 (263)
T PTZ00098 32 YISSGGIEATTKILSDIEL--------NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKI 101 (263)
T ss_pred CCCCCchHHHHHHHHhCCC--------CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCce
Confidence 3444444444555555543 23468999999999999888753 677888777766554432211 3457
Q ss_pred EEEEeCCCCCCCCCCCccEEEeccccccccc--chHHHHHHHHhhcCCCcEEEEEcCCCCCC---ChhhHHH--------
Q 008748 204 TLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ--RDGILLLELDRLLRPGGYFVYSSPEAYAH---DPENRRI-------- 270 (555)
Q Consensus 204 ~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~--d~~~~L~el~RvLkPGG~lvis~P~~~~~---~~e~~~~-------- 270 (555)
.+..+|+...|+++++||+|++..+ ++|.. +...+++++.++|||||+|+++.+..... .......
T Consensus 102 ~~~~~D~~~~~~~~~~FD~V~s~~~-l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~ 180 (263)
T PTZ00098 102 EFEANDILKKDFPENTFDMIYSRDA-ILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTL 180 (263)
T ss_pred EEEECCcccCCCCCCCeEEEEEhhh-HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCC
Confidence 8888998888999999999998774 44443 67889999999999999999987532110 1111111
Q ss_pred --HHHHHHHHHhcCcEEEEEeeceEEeecC
Q 008748 271 --WNAMYDLLKSMCWKIVSKKDQTVIWAKP 298 (555)
Q Consensus 271 --~~~l~~l~~~~gw~vv~~~~~~~iw~KP 298 (555)
-.++.+++++.||+.+..++.+..|...
T Consensus 181 ~~~~~~~~~l~~aGF~~v~~~d~~~~~~~~ 210 (263)
T PTZ00098 181 IPIQEYGDLIKSCNFQNVVAKDISDYWLEL 210 (263)
T ss_pred CCHHHHHHHHHHCCCCeeeEEeCcHHHHHH
Confidence 1377888999999988877766555433
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-14 Score=133.82 Aligned_cols=122 Identities=29% Similarity=0.538 Sum_probs=91.7
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
+..+|||||||+|.++..|++. +++++|+++.++.. ........+....+.++++||+|+|+. +++|
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~fD~i~~~~-~l~~ 90 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPFPDGSFDLIICND-VLEH 90 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----------TTSEEEEEECHTHHCHSSSEEEEEEES-SGGG
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhccccchhhHhhHH-HHhh
Confidence 3469999999999999999875 67778777766543 333344444445556778999999987 7999
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHH---------------HHHHHHHHHHhcCcEEEE
Q 008748 233 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRR---------------IWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~---------------~~~~l~~l~~~~gw~vv~ 287 (555)
++++..+|.++.++|||||+++++++........... .-+++..++++.||++++
T Consensus 91 ~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 91 LPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp SSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred cccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999864210000000 124889999999999886
|
... |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.3e-13 Score=133.66 Aligned_cols=103 Identities=20% Similarity=0.263 Sum_probs=84.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
..+|||+|||+|.++..+++. .++++|+++.++..+..+.+.....++.+..+|...+++++++||+|++.. .+
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~-~l 124 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGF-GL 124 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEec-cc
Confidence 368999999999999888752 688999988887666644433223467888899988888889999999887 68
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
++.++...++.++.++|+|||++++..+.
T Consensus 125 ~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 125 RNVPDYMQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred ccCCCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 88889999999999999999999987643
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.9e-14 Score=145.16 Aligned_cols=136 Identities=14% Similarity=0.147 Sum_probs=104.7
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
...+|||||||+|.++..|+.. .|+++|+++.++..++.. +...+ ..+.+.+++++.+++++++||+|+|.. ++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~-vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLE-VI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhh-HH
Confidence 3468999999999999999864 688898888887666533 22222 367888999989988888999999988 79
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCCCCCC---------------ChhhHH------HHHHHHHHHHhcCcEEEEEe
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH---------------DPENRR------IWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~---------------~~e~~~------~~~~l~~l~~~~gw~vv~~~ 289 (555)
+|+.++..++.++.++|||||.++++++..... .+.... .-+++..++++.||+++...
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 999999999999999999999999987653100 000001 12488999999999999776
Q ss_pred ece
Q 008748 290 DQT 292 (555)
Q Consensus 290 ~~~ 292 (555)
+..
T Consensus 289 G~~ 291 (322)
T PLN02396 289 GFV 291 (322)
T ss_pred eeE
Confidence 554
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=138.37 Aligned_cols=99 Identities=25% Similarity=0.459 Sum_probs=82.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
..+|||+|||+|.++..|+.. .++++|+++.++ +.++++.....+.++|++.+|+++++||+|+++. +++|.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l-----~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~-~l~~~ 116 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPML-----AQARQKDAADHYLAGDIESLPLATATFDLAWSNL-AVQWC 116 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHH-----HHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECc-hhhhc
Confidence 468999999999999988764 577777766554 5555554455778899999999989999999877 69999
Q ss_pred cchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 234 QRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 234 ~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
.++..++.++.|+|+|||.++++++..
T Consensus 117 ~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 117 GNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 999999999999999999999988654
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-13 Score=136.71 Aligned_cols=96 Identities=24% Similarity=0.411 Sum_probs=78.5
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
...+|||||||+|.++..|++. .|+++|+++.++ +.|+++ .+.+.++|+..++ ++++||+|+|+. ++
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~-----~~a~~~--~~~~~~~d~~~~~-~~~~fD~v~~~~-~l 99 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMV-----AAARER--GVDARTGDVRDWK-PKPDTDVVVSNA-AL 99 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHH-----HHHHhc--CCcEEEcChhhCC-CCCCceEEEEeh-hh
Confidence 3468999999999999999864 577787776665 444444 4678888887775 557999999887 69
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
||++++..+++++.++|||||.+++..+.
T Consensus 100 ~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 100 QWVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred hhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 99999999999999999999999998765
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4e-13 Score=135.68 Aligned_cols=135 Identities=19% Similarity=0.225 Sum_probs=101.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCC-CCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLP-YPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp-~~d~sFDlVv~s~~~l 230 (555)
..+|||+|||+|.++..|++. .|+++|+++.++..++.. +.+.+ .++.+.++++..++ +.+++||+|+|.. ++
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~-~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~-vl 122 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQA-AEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA-VL 122 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh-HH
Confidence 468999999999999999875 688999988888766533 33333 35678888877764 5678999999887 68
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCCCCCC---------Ch----------------hhHHHHHHHHHHHHhcCcEE
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH---------DP----------------ENRRIWNAMYDLLKSMCWKI 285 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~---------~~----------------e~~~~~~~l~~l~~~~gw~v 285 (555)
+|+.++..++.++.++|||||++++...+.... .. ...-.-+++.+++++.||++
T Consensus 123 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~ 202 (255)
T PRK11036 123 EWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQI 202 (255)
T ss_pred HhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeE
Confidence 999999999999999999999999865332100 00 00001247788899999999
Q ss_pred EEEeece
Q 008748 286 VSKKDQT 292 (555)
Q Consensus 286 v~~~~~~ 292 (555)
+......
T Consensus 203 ~~~~gi~ 209 (255)
T PRK11036 203 MGKTGVR 209 (255)
T ss_pred eeeeeEE
Confidence 8776644
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.2e-14 Score=137.50 Aligned_cols=103 Identities=20% Similarity=0.360 Sum_probs=89.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
..+|||||||-|.++..||+. .|+|+|++...+..++ ..|.+.+..+.+....++++....++||+|+|.. +++|+
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmE-VlEHv 137 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCME-VLEHV 137 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhh-HHHcc
Confidence 468999999999999999974 7899999888887776 4556667777788888888877668999999999 79999
Q ss_pred cchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 234 QRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 234 ~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
++++.+++.+.+.+||||.+++++++.
T Consensus 138 ~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 138 PDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred CCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 999999999999999999999999873
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-12 Score=142.93 Aligned_cols=135 Identities=24% Similarity=0.335 Sum_probs=99.8
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
+..+|||||||+|.++..|++. .++|+|+++.++..+..+ +.....++.+.++|...+++++++||+|+|.. +++
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~-~l~ 343 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALER-AIGRKCSVEFEVADCTKKTYPDNSFDVIYSRD-TIL 343 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-hhcCCCceEEEEcCcccCCCCCCCEEEEEECC-ccc
Confidence 3468999999999998888763 688888888777655432 22234467899999988888888999999887 588
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCCCC--ChhhHH----------HHHHHHHHHHhcCcEEEEEeec
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAH--DPENRR----------IWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~--~~e~~~----------~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
|..++..++.++.|+|||||.++++++..... ...... .-.++.+++++.||+++..++.
T Consensus 344 h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 344 HIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAEDR 415 (475)
T ss_pred ccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeecc
Confidence 88999999999999999999999986532111 111111 1135677888888888755544
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=135.53 Aligned_cols=134 Identities=22% Similarity=0.205 Sum_probs=98.9
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHH-HHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQF-ALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~-A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
+++|||||||+|.++..+++. .|+|+|.++.++....... ......++.+..++++.+|+ +++||+|+|.. +++
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~-vl~ 200 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMG-VLY 200 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECC-hhh
Confidence 368999999999999998864 4899999988775432211 11113468889899999998 68899999877 688
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCCC-----CChhhH----------HHHHHHHHHHHhcCcEEEEEeec
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAYA-----HDPENR----------RIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~~-----~~~e~~----------~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
|..++..++++++++|+|||.+++.+..... ..+... ..-.++.+++++.||+.+...+.
T Consensus 201 H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 201 HRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDV 275 (322)
T ss_pred ccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeC
Confidence 8999999999999999999999986421100 000000 01247889999999998876654
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-12 Score=127.20 Aligned_cols=137 Identities=18% Similarity=0.266 Sum_probs=93.1
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 234 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~ 234 (555)
.+|||+|||+|.++..|+++ .|+++|+++.++..+....+.....++.+.+.|+..++++ ++||+|+|+. ++||..
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~-~~~~~~ 109 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTV-VLMFLE 109 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEec-chhhCC
Confidence 58999999999999999975 7899999998887766444332223477888888777775 6799999987 477764
Q ss_pred --chHHHHHHHHhhcCCCcEEEEEc-CCC--CC--CChhhHHHHHHHHHHHHhcCcEEEEEeeceEEeec
Q 008748 235 --RDGILLLELDRLLRPGGYFVYSS-PEA--YA--HDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAK 297 (555)
Q Consensus 235 --d~~~~L~el~RvLkPGG~lvis~-P~~--~~--~~~e~~~~~~~l~~l~~~~gw~vv~~~~~~~iw~K 297 (555)
+...++.++.++|+|||++++.. ... .. ..+...-.-.++.+.++ ||+++........+++
T Consensus 110 ~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~~~~~~~~~ 177 (197)
T PRK11207 110 AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYNEDVGELHR 177 (197)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEeeCCHHhhcc
Confidence 34679999999999999965532 110 00 00000001124555555 8988876555444443
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-12 Score=130.36 Aligned_cols=135 Identities=16% Similarity=0.166 Sum_probs=98.6
Q ss_pred CCCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
...+|||||||+|..+..++. ..|+++|+++.++..+..+.+.....++.+..+|+..+++++++||+|++.. +
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~-v 155 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC-V 155 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC-c
Confidence 346999999999987665553 2588999998888766644332222367888899999999888999999665 7
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhh----HH----------HHHHHHHHHHhcCcEEEEEee
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN----RR----------IWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~----~~----------~~~~l~~l~~~~gw~vv~~~~ 290 (555)
+++.++...+++++.|+|||||+|+++........+.. .. ...++.+++++.||..+....
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEe
Confidence 88888888999999999999999999753321111111 01 124678889999998875433
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-12 Score=136.55 Aligned_cols=136 Identities=15% Similarity=0.153 Sum_probs=101.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|||||||+|.++..+++. .++++|+++.++..+..+.. ..++.+..+|...+++++++||+|+++. +++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~~sFDvVIs~~-~L~ 189 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPTDYADRYVSAG-SIE 189 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCCCceeEEEEcC-hhh
Confidence 468999999999988887652 57788888777655543321 2356788899999999989999999877 688
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCCC--CChhhHH------HHHHHHHHHHhcCcEEEEEeeceEEe
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAYA--HDPENRR------IWNAMYDLLKSMCWKIVSKKDQTVIW 295 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~~--~~~e~~~------~~~~l~~l~~~~gw~vv~~~~~~~iw 295 (555)
+.+++..+++++.|+|||||.++++.+.... ....... ..+++.+++++.||+.+..++....|
T Consensus 190 ~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~ 261 (340)
T PLN02490 190 YWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKW 261 (340)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhh
Confidence 8888899999999999999999987643210 0000011 13578899999999998876654443
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-12 Score=125.81 Aligned_cols=99 Identities=26% Similarity=0.441 Sum_probs=80.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC-CCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
..+|||+|||+|.++..+++. .++++|+++.++. .++++. .++.+..+|+..+++++++||+|+++. ++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~-----~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~-~l 108 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLA-----QAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNL-AL 108 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHH-----HHHHhcCCCCeEEecchhhCCCCCCceeEEEEhh-hh
Confidence 368999999999999998864 4577777665553 333332 357888899989998889999999887 68
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
+|..++..++.++.++|+|||.++++++..
T Consensus 109 ~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 109 QWCDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred hhccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 999999999999999999999999988654
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-12 Score=128.36 Aligned_cols=101 Identities=23% Similarity=0.280 Sum_probs=85.5
Q ss_pred CCCEEEEECCCCcHHHHHHhc----------CCCccccCChhhhhHHHHHHHHHcCC----CeEEEEeCCCCCCCCCCCc
Q 008748 155 NIRNVLDVGCGVASFGAYLLS----------HDIIAMSLAPNDVHENQIQFALERGI----PSTLGVLGTKRLPYPSRSF 220 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~----------~~V~~vdis~~dls~a~i~~A~~rg~----~v~~~~~d~~~Lp~~d~sF 220 (555)
...++||++||||-++..+.+ .+|++.|+++.|+..+. +.|.+++. .+.++.+|++.|||++.+|
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgk-qRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGK-QRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHH-HHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 447999999999998887774 26889999999998776 44444533 3678889999999999999
Q ss_pred cEEEecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 221 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 221 DlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
|..++++ .+....++.+.|+|++|||||||+|.+..
T Consensus 179 D~yTiaf-GIRN~th~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 179 DAYTIAF-GIRNVTHIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred eeEEEec-ceecCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999998 58888999999999999999999998743
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.8e-12 Score=122.21 Aligned_cols=148 Identities=21% Similarity=0.306 Sum_probs=103.8
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEE
Q 008748 133 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGV 207 (555)
Q Consensus 133 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~ 207 (555)
..+.+.+.+.+.. .+..+|||+|||+|.++..+++. .++++|+++..+..+..+ .......+.+..
T Consensus 5 ~~~~~~~~~~~~~--------~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~ 75 (241)
T PRK08317 5 RRYRARTFELLAV--------QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVR 75 (241)
T ss_pred HHHHHHHHHHcCC--------CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEe
Confidence 3444555555543 23468999999999999888753 577888877666544432 112245678888
Q ss_pred eCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCC-----CCh----hhHHHH-------
Q 008748 208 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-----HDP----ENRRIW------- 271 (555)
Q Consensus 208 ~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~-----~~~----e~~~~~------- 271 (555)
.|...+++++++||+|++.. ++++..++..+++++.++|+|||++++..+.... ... +....|
T Consensus 76 ~d~~~~~~~~~~~D~v~~~~-~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
T PRK08317 76 GDADGLPFPDGSFDAVRSDR-VLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADP 154 (241)
T ss_pred cccccCCCCCCCceEEEEec-hhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCC
Confidence 89888888889999999887 5888899999999999999999999998764211 001 011111
Q ss_pred ---HHHHHHHHhcCcEEEEEee
Q 008748 272 ---NAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 272 ---~~l~~l~~~~gw~vv~~~~ 290 (555)
..+.+++++.||..+..+.
T Consensus 155 ~~~~~~~~~l~~aGf~~~~~~~ 176 (241)
T PRK08317 155 WLGRRLPGLFREAGLTDIEVEP 176 (241)
T ss_pred cHHHHHHHHHHHcCCCceeEEE
Confidence 2567778888887664433
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-12 Score=121.51 Aligned_cols=101 Identities=23% Similarity=0.397 Sum_probs=83.9
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCC--CCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp--~~d~sFDlVv~s~ 227 (555)
..+|||+|||+|.++..|++ ..++++|+++.++..+.. .+.+.+. ++.+.++|+.+++ ++ +.||+|++..
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~-~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKK-RAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH-HHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhc-ccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 46899999999999999993 368899999888877764 3333444 6999999998887 66 7899999877
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
++++..++..+++++.++|++||.++++.+.
T Consensus 82 -~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 -VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp -TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 6889999999999999999999999998766
|
... |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-12 Score=113.61 Aligned_cols=101 Identities=23% Similarity=0.320 Sum_probs=78.1
Q ss_pred CCEEEEECCCCcHHHHHHhc--C--CCccccCChhhhhHHHHHHHH-HcCCCeEEEEeCC-CCCCCCCCCccEEEecc-c
Q 008748 156 IRNVLDVGCGVASFGAYLLS--H--DIIAMSLAPNDVHENQIQFAL-ERGIPSTLGVLGT-KRLPYPSRSFELAHCSR-C 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~--~--~V~~vdis~~dls~a~i~~A~-~rg~~v~~~~~d~-~~Lp~~d~sFDlVv~s~-~ 228 (555)
..+|||||||+|.++..+++ . +++++|+++.++..++.+... ....++.+...|+ ...... +.||+|++.. +
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~~ 80 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGFT 80 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSGS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCCc
Confidence 35899999999999999987 2 799999999988777755533 2246789999998 444444 5699999887 3
Q ss_pred ccccc--cchHHHHHHHHhhcCCCcEEEEEc
Q 008748 229 RIDWL--QRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 229 ~l~~~--~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
..++. ++...+++++.+.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 22122 445779999999999999999975
|
... |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.6e-12 Score=131.91 Aligned_cols=135 Identities=19% Similarity=0.187 Sum_probs=96.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHH-HHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQI-QFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i-~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
+++|||||||+|.++..++.. .|+|+|.++.++..+.. +........+.+...++..+|.. .+||+|+|+. +++
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~g-vL~ 199 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMG-VLY 199 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcc-hhh
Confidence 468999999999998887753 48899998887654321 11111224567777888888865 4899999887 688
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCCCC-----ChhhH-----H-----HHHHHHHHHHhcCcEEEEEeece
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAH-----DPENR-----R-----IWNAMYDLLKSMCWKIVSKKDQT 292 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~-----~~e~~-----~-----~~~~l~~l~~~~gw~vv~~~~~~ 292 (555)
|..++..+|++++|+|||||.|++.+...... .+... . .-.++...+++.||+.++..+..
T Consensus 200 H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~ 275 (314)
T TIGR00452 200 HRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDVL 275 (314)
T ss_pred ccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEecc
Confidence 88999999999999999999999864321000 00100 0 12477888999999998766543
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.1e-12 Score=121.89 Aligned_cols=137 Identities=15% Similarity=0.258 Sum_probs=93.4
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 234 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~ 234 (555)
.+|||+|||+|.++.+|+++ .|+++|+++.++..+.. .+...+.++.+.+.|....+++ ++||+|+|+. ++++..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~-~~~~~~ 108 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLD-MKARENLPLRTDAYDINAAALN-EDYDFIFSTV-VFMFLQ 108 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHhCCCceeEeccchhcccc-CCCCEEEEec-ccccCC
Confidence 58999999999999999875 78999999888876653 3445566677777887666665 5799999887 466663
Q ss_pred --chHHHHHHHHhhcCCCcEEEEEcC-C--CCCC--ChhhHHHHHHHHHHHHhcCcEEEEEeeceEEeecC
Q 008748 235 --RDGILLLELDRLLRPGGYFVYSSP-E--AYAH--DPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKP 298 (555)
Q Consensus 235 --d~~~~L~el~RvLkPGG~lvis~P-~--~~~~--~~e~~~~~~~l~~l~~~~gw~vv~~~~~~~iw~KP 298 (555)
+...+++++.|+|+|||++++..- . .+.. .....-.-.++.+++. +|+++........|++.
T Consensus 109 ~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~~~~~~~ 177 (195)
T TIGR00477 109 AGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEAVGELHAT 177 (195)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeeccccccccc
Confidence 446799999999999999665421 1 0000 0011112235555554 58888776555445444
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-11 Score=125.14 Aligned_cols=101 Identities=18% Similarity=0.239 Sum_probs=79.9
Q ss_pred CCEEEEECCCCcHHHHHHhc------CCCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCCCCCCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS------HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~------~~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~ 228 (555)
..+|||||||+|..+..++. ..++++|+++.++..++.+.+... ..++.+.++|+..++++ .+|+|+++.
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~- 133 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF- 133 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh-
Confidence 35899999999999887764 268999999998877775554322 23688889998888775 489999877
Q ss_pred ccccccch--HHHHHHHHhhcCCCcEEEEEcCC
Q 008748 229 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 229 ~l~~~~d~--~~~L~el~RvLkPGG~lvis~P~ 259 (555)
++||.++. ..+++++.++|||||.|+++...
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 58887543 56999999999999999998744
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.6e-12 Score=127.80 Aligned_cols=99 Identities=24% Similarity=0.397 Sum_probs=80.6
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
+..+|||||||+|.++..+++. .|+++|+++.++ +.|+++..++.+..+|+..+. ++++||+|+|+. .+
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i-----~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~-~l 103 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAML-----AEARSRLPDCQFVEADIASWQ-PPQALDLIFANA-SL 103 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHH-----HHHHHhCCCCeEEECchhccC-CCCCccEEEEcc-Ch
Confidence 3468999999999999988863 577887776655 455555566788888887665 346899999888 68
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
||..+...+++++.++|||||.+++..|..
T Consensus 104 ~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 104 QWLPDHLELFPRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred hhCCCHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 999999999999999999999999987664
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.2e-12 Score=122.77 Aligned_cols=133 Identities=20% Similarity=0.263 Sum_probs=96.5
Q ss_pred EEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 158 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
+|||||||+|.++..+++. .++++|+++.++..+..+. .+.+ ..+.+...|....+++ ++||+|++.. .++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~-~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~-~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERI-RALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFE-VIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCCcceEEEecccccCCCC-CCCCEeehHH-HHH
Confidence 6999999999999888753 5778888877766555333 2333 3468888887666765 5899999877 588
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCC--CCCh-h-h---HHHHHHHHHHHHhcCcEEEEEeeceE
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAY--AHDP-E-N---RRIWNAMYDLLKSMCWKIVSKKDQTV 293 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~--~~~~-e-~---~~~~~~l~~l~~~~gw~vv~~~~~~~ 293 (555)
+..+...+++++.++|||||+++++.+... .... . . ...-.++.+++++.||+++...+...
T Consensus 79 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~ 147 (224)
T smart00828 79 HIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDASL 147 (224)
T ss_pred hCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEECcH
Confidence 888889999999999999999999875321 0000 0 0 00124677788999999987776543
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-11 Score=118.46 Aligned_cols=120 Identities=18% Similarity=0.082 Sum_probs=92.8
Q ss_pred CCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
+.+|||+|||+|.++..++. ..|+++|+++.++..++.+.+.....++.+..+|+..++. +++||+|+|..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~---- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA---- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc----
Confidence 46899999999999888874 3799999999888777644433333358899999888776 67899999754
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
..+...++.++.++|||||.+++..+.. .-.++.++++.+||.+.+...
T Consensus 121 -~~~~~~~l~~~~~~LkpGG~lv~~~~~~---------~~~~l~~~~~~~~~~~~~~~~ 169 (187)
T PRK00107 121 -VASLSDLVELCLPLLKPGGRFLALKGRD---------PEEEIAELPKALGGKVEEVIE 169 (187)
T ss_pred -ccCHHHHHHHHHHhcCCCeEEEEEeCCC---------hHHHHHHHHHhcCceEeeeEE
Confidence 2455779999999999999999986552 134678888999998776544
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.7e-11 Score=121.09 Aligned_cols=102 Identities=19% Similarity=0.200 Sum_probs=79.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC------CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCCCCCCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~------~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~ 228 (555)
..+|||+|||+|.++..+++. .++++|+++.++..+..+..... ..++.+.++|+..++++ .+|+|++++
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~- 130 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF- 130 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec-
Confidence 358999999999999887752 58899998888766654432211 24678899999888875 489999887
Q ss_pred ccccccc--hHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 229 RIDWLQR--DGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 229 ~l~~~~d--~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
++||..+ ...+++++.|+|+|||.|+++.+..
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 5788753 4679999999999999999987643
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.6e-12 Score=125.53 Aligned_cols=87 Identities=22% Similarity=0.248 Sum_probs=71.9
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
..+|||||||||.++..|++. .|+|+|+++.|+..+ +++. .+.++|++.+|+++++||+|++++ .+++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a-----~~~~---~~~~~d~~~lp~~d~sfD~v~~~~-~l~~ 122 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMN-----LVAD---DKVVGSFEALPFRDKSFDVVMSSF-ALHA 122 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHH-----Hhcc---ceEEechhhCCCCCCCEEEEEecC-hhhc
Confidence 358999999999999998864 577887777766544 3332 356789999999999999999988 6889
Q ss_pred ccchHHHHHHHHhhcCCCc
Q 008748 233 LQRDGILLLELDRLLRPGG 251 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPGG 251 (555)
.++++.+++|+.|+|||.+
T Consensus 123 ~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 123 SDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred cCCHHHHHHHHHHHhcCce
Confidence 9999999999999999953
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-11 Score=121.40 Aligned_cols=122 Identities=17% Similarity=0.177 Sum_probs=92.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCC-CCCC--CCCCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLP--YPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~-~~Lp--~~d~sFDlVv~s~~ 228 (555)
..+|||+|||+|.++..+++. .++++|+++.++..+..+.......++.+.++|+ ..++ +++++||+|++.+.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~ 120 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFP 120 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECC
Confidence 468999999999999988753 6899999998887666444333234688999998 7776 77789999998763
Q ss_pred ccccccc--------hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 229 RIDWLQR--------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 229 ~l~~~~d--------~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
.+|... ...+++++.++|||||.|+++++.. .....+.+.+++.||.+.
T Consensus 121 -~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~--------~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 121 -DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE--------GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH--------HHHHHHHHHHHhCccccc
Confidence 444321 3568999999999999999987652 345567778888888554
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-12 Score=113.05 Aligned_cols=92 Identities=29% Similarity=0.576 Sum_probs=71.6
Q ss_pred EEEECCCCcHHHHHHhc-------CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 159 VLDVGCGVASFGAYLLS-------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 159 VLDIGCGtG~~a~~La~-------~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
|||+|||+|..+..+++ ..++++|+++.++..+..+. .+.+.++.+.++|+.++++.+++||+|+|+.++++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~-~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRF-SEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHS-HHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhc-hhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 79999999999988874 36778888887776655333 33557899999999999988889999999776678
Q ss_pred cccch--HHHHHHHHhhcCCCc
Q 008748 232 WLQRD--GILLLELDRLLRPGG 251 (555)
Q Consensus 232 ~~~d~--~~~L~el~RvLkPGG 251 (555)
|..+. ..+++++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 77543 669999999999998
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.7e-12 Score=130.30 Aligned_cols=141 Identities=16% Similarity=0.297 Sum_probs=91.4
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
++.+|||||||.|.++.+++++ .|+|+++|......+. +.+.+.|. .+.+...|..+++. +||.|+|.. .
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~-~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~-~ 136 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYAR-ERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIE-M 136 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHH-HHHHCSTSSSTEEEEES-GGG------S-SEEEEES-E
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHH-HHHHhcCCCCceEEEEeeccccCC---CCCEEEEEe-c
Confidence 3469999999999999999975 6777777666554443 33344454 47888888877764 899999988 5
Q ss_pred cccc--cchHHHHHHHHhhcCCCcEEEEEc---CCC----CCC--Chhh-HHH--------HHHHHHHHHhcCcEEEEEe
Q 008748 230 IDWL--QRDGILLLELDRLLRPGGYFVYSS---PEA----YAH--DPEN-RRI--------WNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 230 l~~~--~d~~~~L~el~RvLkPGG~lvis~---P~~----~~~--~~e~-~~~--------~~~l~~l~~~~gw~vv~~~ 289 (555)
++|+ .+...+++++.++|||||.+++.. +.. ... .... ..+ ..++...+++.||++....
T Consensus 137 ~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~~~~ 216 (273)
T PF02353_consen 137 FEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLEVEDVE 216 (273)
T ss_dssp GGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EEEEEE
T ss_pred hhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEEEEEEE
Confidence 7777 455789999999999999998743 111 000 0111 112 2366677889999999888
Q ss_pred eceEEeecCCC
Q 008748 290 DQTVIWAKPIS 300 (555)
Q Consensus 290 ~~~~iw~KPl~ 300 (555)
+....|.+.+.
T Consensus 217 ~~~~hY~~Tl~ 227 (273)
T PF02353_consen 217 NLGRHYARTLR 227 (273)
T ss_dssp E-HHHHHHHHH
T ss_pred EcCcCHHHHHH
Confidence 87766666553
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-11 Score=125.02 Aligned_cols=131 Identities=18% Similarity=0.342 Sum_probs=91.1
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 234 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~ 234 (555)
.+|||+|||+|.++.+|++. .|+++|+++.++..++ +.+.+.+.++.+...|+...++ +++||+|++.. ++++..
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~-vl~~l~ 198 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTV-VLMFLN 198 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcc-hhhhCC
Confidence 48999999999999999864 7889999888876655 4455566778888888776655 57899999887 577764
Q ss_pred --chHHHHHHHHhhcCCCcEEEEEcCCC---CC-CCh-hhHHHHHHHHHHHHhcCcEEEEEeece
Q 008748 235 --RDGILLLELDRLLRPGGYFVYSSPEA---YA-HDP-ENRRIWNAMYDLLKSMCWKIVSKKDQT 292 (555)
Q Consensus 235 --d~~~~L~el~RvLkPGG~lvis~P~~---~~-~~~-e~~~~~~~l~~l~~~~gw~vv~~~~~~ 292 (555)
+...+++++.++|+|||++++..+.. .. ..+ ...-.-.++.++++ +|+++......
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~--~~~i~~~~e~~ 261 (287)
T PRK12335 199 RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQ--DWEIVKYNENV 261 (287)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhC--CCEEEEEeccc
Confidence 44669999999999999977653211 00 000 00011235556554 48888765433
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-12 Score=112.36 Aligned_cols=93 Identities=26% Similarity=0.398 Sum_probs=57.5
Q ss_pred EEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC-C-CCCCccEEEecccccccc
Q 008748 160 LDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-Y-PSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 160 LDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp-~-~d~sFDlVv~s~~~l~~~ 233 (555)
||||||+|.++..+++. +++++|+++.++..++.++.............+..... . ..++||+|+++. ++||.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~-vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASN-VLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE--TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhh-hHhhh
Confidence 79999999999888753 78999999999866654544433334444444333322 1 225899999887 79999
Q ss_pred cchHHHHHHHHhhcCCCcEE
Q 008748 234 QRDGILLLELDRLLRPGGYF 253 (555)
Q Consensus 234 ~d~~~~L~el~RvLkPGG~l 253 (555)
++...+++.+.++|||||.|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-10 Score=112.21 Aligned_cols=101 Identities=19% Similarity=0.282 Sum_probs=79.3
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
+..+|||+|||+|.++..++.. .++++|+++..+..+..+.. ...++.+..+|+..+++++++||+|+++. .
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~i~~~~-~ 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFDAVTIAF-G 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEEEEEEee-e
Confidence 3468999999999999888753 56777777665544432222 23457888899888888778999999877 5
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
+++..++..+++++.++|+|||++++...
T Consensus 116 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 116 LRNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred eCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 88888889999999999999999998653
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-10 Score=111.32 Aligned_cols=122 Identities=15% Similarity=0.120 Sum_probs=85.7
Q ss_pred CCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
+.+|||+|||+|.++..++. ..|+++|+++.++..+... +++.+. ++.+..+|+..++. +++||+|+|.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~-~~~~~~~~i~~i~~d~~~~~~-~~~fD~I~s~~--~ 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREV-KAELGLNNVEIVNGRAEDFQH-EEQFDVITSRA--L 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHH-HHHhCCCCeEEEecchhhccc-cCCccEEEehh--h
Confidence 36899999999998888763 3689999999887655533 333443 58889999887753 57899998653 3
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
+ +...+++.+.++|+|||.+++..... .......+++.+...|++.+....
T Consensus 119 ~---~~~~~~~~~~~~LkpgG~lvi~~~~~------~~~~~~~~~e~~~~~~~~~~~~~~ 169 (181)
T TIGR00138 119 A---SLNVLLELTLNLLKVGGYFLAYKGKK------YLDEIEEAKRKCQVLGVEPLEVPP 169 (181)
T ss_pred h---CHHHHHHHHHHhcCCCCEEEEEcCCC------cHHHHHHHHHhhhhcCceEeeccc
Confidence 3 34568899999999999999865332 122333444445557887775543
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.7e-11 Score=114.47 Aligned_cols=102 Identities=21% Similarity=0.326 Sum_probs=84.9
Q ss_pred CEEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeE-EEEeCCCCCC-CCCCCccEEEecccccc
Q 008748 157 RNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKRLP-YPSRSFELAHCSRCRID 231 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~rg~~v~-~~~~d~~~Lp-~~d~sFDlVv~s~~~l~ 231 (555)
..||+||||||..-.+... ..|+++|.++.|-+-+...++.++..++. |++++.+++| ++++++|.|+|.++ +-
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv-LC 156 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV-LC 156 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE-Ee
Confidence 3689999999977666552 37899999998877776666666666776 8999999999 89999999999984 66
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
-.+++.+.|.|+.|+|||||.+++....
T Consensus 157 Sve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 157 SVEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred ccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 6789999999999999999999997644
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.2e-11 Score=113.60 Aligned_cols=127 Identities=22% Similarity=0.294 Sum_probs=89.6
Q ss_pred CEEEEECCCCcHHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCC-CCC-CCCCCccEEEeccccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK-RLP-YPSRSFELAHCSRCRIDWLQ 234 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~-~Lp-~~d~sFDlVv~s~~~l~~~~ 234 (555)
.+|||+|||.|.+..+|.+.+ .++..+.+++++.+..+.++|.+ +.++|++ .|+ |++++||.|+.+. +++.+.
T Consensus 15 srVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~rGv~--Viq~Dld~gL~~f~d~sFD~VIlsq-tLQ~~~ 89 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVARGVS--VIQGDLDEGLADFPDQSFDYVILSQ-TLQAVR 89 (193)
T ss_pred CEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHcCCC--EEECCHHHhHhhCCCCCccEEehHh-HHHhHh
Confidence 589999999999999998731 22223334555556677777776 4566643 443 8999999999999 699999
Q ss_pred chHHHHHHHHhhcCCCcEEEEEcCCCC-----------------------CCChhh--HHHHHHHHHHHHhcCcEEEEEe
Q 008748 235 RDGILLLELDRLLRPGGYFVYSSPEAY-----------------------AHDPEN--RRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 235 d~~~~L~el~RvLkPGG~lvis~P~~~-----------------------~~~~e~--~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
+++.+|.|+.|+ |...+++.|+.- +++.-. .-...+++++.++.|+++.+..
T Consensus 90 ~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~ 166 (193)
T PF07021_consen 90 RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERV 166 (193)
T ss_pred HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEE
Confidence 999999999877 557788777630 011111 1234588888888888887655
Q ss_pred ec
Q 008748 290 DQ 291 (555)
Q Consensus 290 ~~ 291 (555)
..
T Consensus 167 ~~ 168 (193)
T PF07021_consen 167 FL 168 (193)
T ss_pred EE
Confidence 43
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-10 Score=116.99 Aligned_cols=168 Identities=13% Similarity=0.277 Sum_probs=111.9
Q ss_pred eeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHH
Q 008748 119 INFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQF 195 (555)
Q Consensus 119 ~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~ 195 (555)
-.|++...........-.+.+.+.+.+. ++.+|||||||.|.++.++++. +|+|+++|..+...+. +.
T Consensus 44 ayf~~~~~tL~eAQ~~k~~~~~~kl~L~--------~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~-~r 114 (283)
T COG2230 44 AYFEDPDMTLEEAQRAKLDLILEKLGLK--------PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAE-KR 114 (283)
T ss_pred EEeCCCCCChHHHHHHHHHHHHHhcCCC--------CCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHH-HH
Confidence 3455555445555555556666666543 3479999999999999999975 6788888887776665 33
Q ss_pred HHHcCCC--eEEEEeCCCCCCCCCCCccEEEecccccccccc--hHHHHHHHHhhcCCCcEEEEEc---CCCCC-C-Chh
Q 008748 196 ALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSS---PEAYA-H-DPE 266 (555)
Q Consensus 196 A~~rg~~--v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d--~~~~L~el~RvLkPGG~lvis~---P~~~~-~-~~e 266 (555)
++++|.. +++...|..++. +.||-|+|.. .++|+.. ...++..+.++|+|||.+++.+ +.... . ...
T Consensus 115 ~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvg-mfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~ 190 (283)
T COG2230 115 IAARGLEDNVEVRLQDYRDFE---EPFDRIVSVG-MFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDF 190 (283)
T ss_pred HHHcCCCcccEEEeccccccc---cccceeeehh-hHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHH
Confidence 4445554 777777776665 4499999888 5888855 6889999999999999999754 22111 1 111
Q ss_pred hHH-HH--------HHHHHHHHhcCcEEEEEeeceEEeecCC
Q 008748 267 NRR-IW--------NAMYDLLKSMCWKIVSKKDQTVIWAKPI 299 (555)
Q Consensus 267 ~~~-~~--------~~l~~l~~~~gw~vv~~~~~~~iw~KPl 299 (555)
..+ +| ..+...+++.||.+...+.....+-+.+
T Consensus 191 i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl 232 (283)
T COG2230 191 IDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTL 232 (283)
T ss_pred HHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHH
Confidence 111 11 3566667888888886665544333333
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.19 E-value=9e-11 Score=114.01 Aligned_cols=122 Identities=15% Similarity=0.223 Sum_probs=88.1
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC---CCCCCccEEEecccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---YPSRSFELAHCSRCR 229 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp---~~d~sFDlVv~s~~~ 229 (555)
.+|||||||+|.++..++.. .++++|++..++..+..+.......++.+..+|+..++ +++++||.|++.+ .
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~-p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF-P 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC-C
Confidence 58999999999999988864 78899999888766664443332346888989986553 5567899999776 3
Q ss_pred cccccch--------HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcC-cEEEE
Q 008748 230 IDWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVS 287 (555)
Q Consensus 230 l~~~~d~--------~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g-w~vv~ 287 (555)
.+|.... ..++.++.|+|||||.|++.+... ....++.+.+...+ |+.+.
T Consensus 97 dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~--------~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 97 DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE--------PLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH--------HHHHHHHHHHHhCCCeEecc
Confidence 5554321 468999999999999999976442 23445555555554 76654
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.3e-10 Score=111.78 Aligned_cols=101 Identities=19% Similarity=0.297 Sum_probs=80.2
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
..+|||+|||+|.++..++. ..++++|+++..+..+..+..... ..++.+..+|+..++++.++||+|+++. .
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~-~ 130 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF-G 130 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec-c
Confidence 36899999999999888864 357888888777665554332211 2357888889888888778999999887 5
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
+++..++..++.++.++|+|||.+++..
T Consensus 131 l~~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 131 LRNVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred cccCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 8888889999999999999999998865
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.6e-10 Score=112.46 Aligned_cols=131 Identities=18% Similarity=0.197 Sum_probs=91.3
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|||+|||+|.++..++.. .++|+|+++.++..++.+.. ..+ .++.+.+.|+..++ ++||+|++... ++
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~-~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~-l~ 130 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQ-GRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV-LI 130 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-hcCCCCceEEEECChhhCC---CCcCEEEEhhH-HH
Confidence 468999999999999999864 68889988888766664433 223 26788888887776 78999998874 54
Q ss_pred ccc--chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhh---------------HHHHHHHHHHHHhcCcEEEEEeec
Q 008748 232 WLQ--RDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN---------------RRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 232 ~~~--d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~---------------~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
|.+ +...++.++.+++++++++.++....+...... ...-++++++++.+||+++..+..
T Consensus 131 ~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~ 207 (219)
T TIGR02021 131 HYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLV 207 (219)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecc
Confidence 443 346689999999998777665432210000000 001247889999999999876543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.2e-10 Score=106.75 Aligned_cols=121 Identities=12% Similarity=0.022 Sum_probs=87.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|||+|||+|.++..++.+ .++++|+++.++..++.+.......++.+..++.. .+++ ++||+|++... .+
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~~-~~~D~v~~~~~-~~ 108 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IELP-GKADAIFIGGS-GG 108 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhcC-cCCCEEEECCC-cc
Confidence 458999999999999888753 68899999888776664443332235677777753 3343 57999998653 32
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
....++.++.++|+|||++++..... ....++.+++++.||+.+....
T Consensus 109 ---~~~~~l~~~~~~Lk~gG~lv~~~~~~--------~~~~~~~~~l~~~g~~~~~~~~ 156 (187)
T PRK08287 109 ---NLTAIIDWSLAHLHPGGRLVLTFILL--------ENLHSALAHLEKCGVSELDCVQ 156 (187)
T ss_pred ---CHHHHHHHHHHhcCCCeEEEEEEecH--------hhHHHHHHHHHHCCCCcceEEE
Confidence 23568999999999999999864321 3356778899999997665443
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.3e-10 Score=112.67 Aligned_cols=92 Identities=15% Similarity=0.177 Sum_probs=69.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--------CCCCCccE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--------~~d~sFDl 222 (555)
..+|||||||+|.++..+++. .|+++|+++. ....++.+.++|+...+ +.+++||+
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~ 120 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQV 120 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCE
Confidence 458999999999999988763 5888888761 11245788899987753 56788999
Q ss_pred EEecccccccccch-----------HHHHHHHHhhcCCCcEEEEEcCC
Q 008748 223 AHCSRCRIDWLQRD-----------GILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 223 Vv~s~~~l~~~~d~-----------~~~L~el~RvLkPGG~lvis~P~ 259 (555)
|+|.. +.++..++ ..+|.++.++|+|||.|++....
T Consensus 121 V~S~~-~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 121 VMSDM-APNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred EecCC-CCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 99865 45554322 45899999999999999996643
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.7e-11 Score=113.98 Aligned_cols=119 Identities=21% Similarity=0.314 Sum_probs=93.0
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
...++|.|+|||+|..+..|+++ .|+|+|-|+.| +..|+++.+++.|..+|+.... ++..+|+++++. +
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~M-----la~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNA-v 101 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAM-----LAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANA-V 101 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHH-----HHHHHHhCCCCceecccHhhcC-CCCccchhhhhh-h
Confidence 44578999999999999999985 56666655555 4666788899999999998875 346799999655 8
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcE
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 284 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~ 284 (555)
++|.++-..+|..+...|.|||.+.+..|+.+.. ....-|.+.+++.-|.
T Consensus 102 lqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~de-----psH~~mr~~A~~~p~~ 151 (257)
T COG4106 102 LQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDE-----PSHRLMRETADEAPFA 151 (257)
T ss_pred hhhccccHHHHHHHHHhhCCCceEEEECCCccCc-----hhHHHHHHHHhcCchh
Confidence 9999999999999999999999999999986422 1234555666555553
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.4e-10 Score=123.12 Aligned_cols=290 Identities=13% Similarity=0.149 Sum_probs=157.9
Q ss_pred CCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
..+|||+|||+|.++..++. ..++++|+++.++..+..+. ...+. .+.+..+|... +++.++||+|+|+-..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~-~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNA-IKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHH-HHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 35899999999999988874 36899999998887776544 33333 46777777532 2345689999984211
Q ss_pred c-------------cccc------------chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcE
Q 008748 230 I-------------DWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 284 (555)
Q Consensus 230 l-------------~~~~------------d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~ 284 (555)
+ .|.+ ....++.++.++|+|||.+++.... ..-+.+.+++.+.||.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~---------~q~~~v~~~~~~~g~~ 287 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF---------KQEEAVTQIFLDHGYN 287 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC---------chHHHHHHHHHhcCCC
Confidence 1 1110 1133677889999999999986432 1234677888888986
Q ss_pred EEEEeeceEEeecCCCchhhhccCCCCCCCCCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCcc
Q 008748 285 IVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLE 364 (555)
Q Consensus 285 vv~~~~~~~iw~KPl~~~c~~~r~~~~~p~lc~~~~~~~~~wy~~L~~Ci~~~~~~~~~~~~~~~~~~p~rl~~~~~~~~ 364 (555)
.+....+.. + .+.+.. -.+.++...-.. .+|-.+.+=.+++ .-..+.
T Consensus 288 ~~~~~~D~~----------------g-~~R~v~-----------~~~~~~~rs~~r---r~g~~~~~~q~~~--~e~~~p 334 (506)
T PRK01544 288 IESVYKDLQ----------------G-HSRVIL-----------ISPINLNRSYAR---RIGKSLSGVQQNL--LDNELP 334 (506)
T ss_pred ceEEEecCC----------------C-CceEEE-----------eccccCCcceec---cCCCCCCHHHHHH--HHhhhh
Confidence 554332210 0 011110 001111111100 0110000000000 000011
Q ss_pred ccCCChhhHhHhHhhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-----CchhHH
Q 008748 365 EVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-----ARLKII 439 (555)
Q Consensus 365 ~~~~~~~~~~~d~~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-----~~l~~i 439 (555)
..+++.+ + +....-..++|++||.|+|.+++....-- .|++=++-. ..+.-+
T Consensus 335 ~~~i~~e-----------------k-----lf~~~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~ 391 (506)
T PRK01544 335 KYLFSKE-----------------K-----LVNEKRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLA 391 (506)
T ss_pred hhCCCHH-----------------H-----hCCCCCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHH
Confidence 1122210 1 11234588999999999999999643111 245544432 344556
Q ss_pred hhccccchhcccccCC----CCCC-Cccchhhccccccccc------cCCCChhhhhhhhcccccCCceEEEe-cchhHH
Q 008748 440 YDRGLIGTVHDWCESF----STYP-RTYDLLHAWKVFSEIE------ERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSII 507 (555)
Q Consensus 440 ~~rgl~g~~~~~ce~~----~typ-rtydl~h~~~~~s~~~------~~~c~~~~~~~e~drilrp~g~~i~r-d~~~~~ 507 (555)
.++||-.+. =.|..+ .-+| .+.|-||- .|.+-+ ++|=--...|-++-|+|+|||.+.++ |..+..
T Consensus 392 ~~~~l~N~~-~~~~~~~~~~~~~~~~sv~~i~i--~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~ 468 (506)
T PRK01544 392 GEQNITNFL-LFPNNLDLILNDLPNNSLDGIYI--LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYF 468 (506)
T ss_pred HHcCCCeEE-EEcCCHHHHHHhcCcccccEEEE--ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHH
Confidence 677763221 122211 2223 46666652 244222 34445568899999999999999886 666666
Q ss_pred HHHHHHHh
Q 008748 508 NYIRKFIT 515 (555)
Q Consensus 508 ~~~~~~~~ 515 (555)
+.+.+.+.
T Consensus 469 ~~~~~~~~ 476 (506)
T PRK01544 469 YEAIELIQ 476 (506)
T ss_pred HHHHHHHH
Confidence 66555544
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.4e-10 Score=107.45 Aligned_cols=122 Identities=16% Similarity=0.131 Sum_probs=89.0
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 234 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~ 234 (555)
.+|||+|||+|.++..++.. .++++|+++.++..+..+.. ..+..+.+..+|....+ .++||+|+++.. .+...
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p-~~~~~ 96 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAK-LNNVGLDVVMTDLFKGV--RGKFDVILFNPP-YLPLE 96 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCceEEEEccccccc--CCcccEEEECCC-CCCCc
Confidence 57999999999999998875 58899999888776664443 34456777888865543 358999998753 32222
Q ss_pred c---------------------hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 235 R---------------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 235 d---------------------~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
+ ...++.++.++|+|||.+++..+... .-.++..++++.||.......
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--------~~~~~~~~l~~~gf~~~~~~~ 165 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--------GEPDTFDKLDERGFRYEIVAE 165 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--------ChHHHHHHHHhCCCeEEEEEE
Confidence 1 24579999999999999999775431 124667888999998775544
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-10 Score=112.55 Aligned_cols=99 Identities=24% Similarity=0.482 Sum_probs=78.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
+.++||+|||.|..+.+|+++ .|+++|+++..+.... +.|.+.+.++...+.|+....++ +.||+|++.. +++|.
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~-~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~-v~~fL 107 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQ-RLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTV-VFMFL 107 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHH-HHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEES-SGGGS
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHhhcCceeEEEEecchhcccc-CCcCEEEEEE-EeccC
Confidence 358999999999999999986 7899999998876654 67788889999999998888776 6799999765 57776
Q ss_pred cch--HHHHHHHHhhcCCCcEEEEEc
Q 008748 234 QRD--GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 234 ~d~--~~~L~el~RvLkPGG~lvis~ 257 (555)
... ..++..+...++|||++++.+
T Consensus 108 ~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 108 QRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp -GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 544 558999999999999988843
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.6e-10 Score=111.21 Aligned_cols=134 Identities=16% Similarity=0.308 Sum_probs=97.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCCCC-CCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYP-SRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp~~-d~sFDlVv~s~~~l~ 231 (555)
..+|||+|||+|.++..+++. .++++|+++.++..+..+... .+. ++.+...+...++.. .++||+|++.. .++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~-~l~ 123 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKK-DPLLKIEYRCTSVEDLAEKGAKSFDVVTCME-VLE 123 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH-cCCCceEEEeCCHHHhhcCCCCCccEEEehh-HHH
Confidence 468999999999999888753 577888888776655543332 334 577888887766644 37899999887 688
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCCCCC---------------hh---hHH---HHHHHHHHHHhcCcEEEEEee
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD---------------PE---NRR---IWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~---------------~e---~~~---~~~~l~~l~~~~gw~vv~~~~ 290 (555)
+..++..++.++.++|+|||.++++.+...... +. ... .-.++.+++++.||++++...
T Consensus 124 ~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~~ 203 (224)
T TIGR01983 124 HVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVKG 203 (224)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeeee
Confidence 899999999999999999999998775321000 00 000 113688899999999987664
Q ss_pred c
Q 008748 291 Q 291 (555)
Q Consensus 291 ~ 291 (555)
.
T Consensus 204 ~ 204 (224)
T TIGR01983 204 L 204 (224)
T ss_pred E
Confidence 3
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.3e-11 Score=116.24 Aligned_cols=132 Identities=26% Similarity=0.365 Sum_probs=96.2
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC-CC-CCCCCccEEEeccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LP-YPSRSFELAHCSRCRI 230 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~-Lp-~~d~sFDlVv~s~~~l 230 (555)
..+++||+|||||..+..|... .++|+| +|++|+..|.+++.--.+.+++... ++ ..+..||+|++.. ++
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a~~ltGvD-----iS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaD-Vl 198 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMADRLTGVD-----ISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAAD-VL 198 (287)
T ss_pred ccceeeecccCcCcccHhHHHHHhhccCCc-----hhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhh-HH
Confidence 3689999999999999888764 455555 5566667777887655556666442 23 4457899999776 79
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCC---CCC--CChhhHH--HHHHHHHHHHhcCcEEEEEeece
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPE---AYA--HDPENRR--IWNAMYDLLKSMCWKIVSKKDQT 292 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~---~~~--~~~e~~~--~~~~l~~l~~~~gw~vv~~~~~~ 292 (555)
.|+.+.+.++.-+...|+|||.|.||+-. .+. -.+..+. .-.-+..+++..||+++..++.+
T Consensus 199 ~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 199 PYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred HhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeeccc
Confidence 99999999999999999999999998733 111 1111111 12367788999999999877654
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.7e-11 Score=119.76 Aligned_cols=99 Identities=18% Similarity=0.272 Sum_probs=74.8
Q ss_pred CCEEEEECCCCcHHHHHHhc--CCCccccCChhhhhHHHHHHHHHc--CCC----eEEEEeCCCCCCCCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER--GIP----STLGVLGTKRLPYPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~--~~V~~vdis~~dls~a~i~~A~~r--g~~----v~~~~~d~~~Lp~~d~sFDlVv~s~ 227 (555)
+++|||+|||+|.++..|+. +.|+|+|++..++..+....+... ..+ +.+...+.+.+. +.||.|+|+.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeHH
Confidence 36799999999999999997 478888887777765554421111 111 234444455443 4599999999
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
+++|+.++..++..+.+.|||||.+++++-
T Consensus 167 -vleHV~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 167 -VLEHVKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred -HHHHHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence 799999999999999999999999999874
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.1e-11 Score=128.26 Aligned_cols=174 Identities=14% Similarity=0.255 Sum_probs=111.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
+.+|||||||+|.++..+++. .|+++|+++.++..+..+. .+..+.+...|...+ +++||+|++.. .++|
T Consensus 168 g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~---~~l~v~~~~~D~~~l---~~~fD~Ivs~~-~~eh 240 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERC---AGLPVEIRLQDYRDL---NGQFDRIVSVG-MFEH 240 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---ccCeEEEEECchhhc---CCCCCEEEEeC-chhh
Confidence 468999999999999988863 5777777766654443222 134567777776655 37899999877 5777
Q ss_pred cc--chHHHHHHHHhhcCCCcEEEEEcCCCCCC----Chhh---------HHHHHHHHHHHHhcCcEEEEEeeceEEeec
Q 008748 233 LQ--RDGILLLELDRLLRPGGYFVYSSPEAYAH----DPEN---------RRIWNAMYDLLKSMCWKIVSKKDQTVIWAK 297 (555)
Q Consensus 233 ~~--d~~~~L~el~RvLkPGG~lvis~P~~~~~----~~e~---------~~~~~~l~~l~~~~gw~vv~~~~~~~iw~K 297 (555)
+. +...+++++.++|||||++++........ .... .....++...++ .+|.+...++....|.+
T Consensus 241 vg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~ 319 (383)
T PRK11705 241 VGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVMEDWHNFGADYDR 319 (383)
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEEEEecChhhHHH
Confidence 64 34679999999999999999865321100 0000 001234555444 58998888877777766
Q ss_pred CCCchhhhccCCCCCCCCCCC-CCCCCcccccccccccccccc
Q 008748 298 PISNSCYLKRVPGSRPPLCSS-DDDPDVTWNVLMKACISPYSA 339 (555)
Q Consensus 298 Pl~~~c~~~r~~~~~p~lc~~-~~~~~~~wy~~L~~Ci~~~~~ 339 (555)
.+..-.-.+. ...+.+... ++.....|...|..|......
T Consensus 320 TL~~W~~~f~--~~~~~~~~~~~~~~~r~w~~yl~~~~~~F~~ 360 (383)
T PRK11705 320 TLMAWHENFE--AAWPELADNYSERFYRMWRYYLLSCAGAFRA 360 (383)
T ss_pred HHHHHHHHHH--HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 6654222222 122223222 455567899999999765544
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-10 Score=128.74 Aligned_cols=101 Identities=16% Similarity=0.153 Sum_probs=79.3
Q ss_pred CCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--CCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--~~d~sFDlVv~s~~~ 229 (555)
+.+|||||||+|.++..++. ..++|+|+++.++..++.+. ...+.++.+.++|...+| +++++||+|+++. +
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl-~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~-v 496 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKK-QNEGRSWNVIKGDAINLSSSFEKESVDTIVYSS-I 496 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh-hhcCCCeEEEEcchHhCccccCCCCEEEEEEch-H
Confidence 46899999999999888875 37888998888876665332 233456778888988887 7889999999877 4
Q ss_pred cccc-------------cchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 230 IDWL-------------QRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 230 l~~~-------------~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
+|+. .+...+++++.|+|||||.+++...
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 5542 2446799999999999999999864
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.5e-11 Score=111.51 Aligned_cols=101 Identities=18% Similarity=0.255 Sum_probs=73.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCC-eEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~-v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
..+|||+|||+|.++..++.. .|+++|+++..+..+..+... .+.. +.+...|.... .++++||+|+|+- .+
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~-n~~~~v~~~~~d~~~~-~~~~~fD~Iv~NP-P~ 108 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAER-NGLENVEVVQSDLFEA-LPDGKFDLIVSNP-PF 108 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHH-TTCTTEEEEESSTTTT-CCTTCEEEEEE----S
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-cCcccccccccccccc-ccccceeEEEEcc-ch
Confidence 358999999999999999874 488999998888666654443 3444 78888885432 2368899999875 34
Q ss_pred ccccc-----hHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 231 DWLQR-----DGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 231 ~~~~d-----~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
+...+ ...++.+..+.|+|||.++++...
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 33322 356899999999999999876644
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.2e-10 Score=113.59 Aligned_cols=147 Identities=18% Similarity=0.185 Sum_probs=106.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCC--CCCCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLP--YPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp--~~d~sFDlVv~s~~ 228 (555)
..+|||+|||+|.++..++++ .|+++++.+.+...++.+.+... ..++.+.+.|+..+. ....+||+|+|+--
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 579999999999999999975 67888888877766665555432 246888999987664 33457999999521
Q ss_pred ccc---------------c--ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 229 RID---------------W--LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 229 ~l~---------------~--~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
... | ..+.+.+++...++|||||.+.++.|+ +...++..++++.+|...+....
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---------erl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP---------ERLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH---------HHHHHHHHHHHhcCCCceEEEEe
Confidence 000 1 112366899999999999999998876 34567889999999988876665
Q ss_pred eEEeecCCCchhhhccCCCC
Q 008748 292 TVIWAKPISNSCYLKRVPGS 311 (555)
Q Consensus 292 ~~iw~KPl~~~c~~~r~~~~ 311 (555)
...-.|+.++...+.++.++
T Consensus 196 ~p~~~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 196 YPKIGKAANRVLVEAIKGGK 215 (248)
T ss_pred cCCCCCcceEEEEEEecCCC
Confidence 54445555666666666554
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=113.04 Aligned_cols=151 Identities=17% Similarity=0.217 Sum_probs=98.2
Q ss_pred ceeeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHH
Q 008748 117 EKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQI 193 (555)
Q Consensus 117 e~~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i 193 (555)
........+..|..+.....+...+++.... ....+|||+|||+|.++..++.. .|+++|+++.++..++.
T Consensus 127 ~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~------~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~ 200 (288)
T TIGR00406 127 ALIIMLDPGLAFGTGTHPTTSLCLEWLEDLD------LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARK 200 (288)
T ss_pred cEEEEECCCCcccCCCCHHHHHHHHHHHhhc------CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHH
Confidence 3444555566676666655555554443211 12368999999999998887653 68999999988877765
Q ss_pred HHHHHcCCC--eEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHH
Q 008748 194 QFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIW 271 (555)
Q Consensus 194 ~~A~~rg~~--v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~ 271 (555)
+... .+.. +.+...+ ..+..+++||+|+++. ..+ ....++.++.++|||||+++++.... ...
T Consensus 201 n~~~-n~~~~~~~~~~~~--~~~~~~~~fDlVvan~-~~~---~l~~ll~~~~~~LkpgG~li~sgi~~--------~~~ 265 (288)
T TIGR00406 201 NAEL-NQVSDRLQVKLIY--LEQPIEGKADVIVANI-LAE---VIKELYPQFSRLVKPGGWLILSGILE--------TQA 265 (288)
T ss_pred HHHH-cCCCcceEEEecc--cccccCCCceEEEEec-CHH---HHHHHHHHHHHHcCCCcEEEEEeCcH--------hHH
Confidence 4433 3332 3334333 2334457899999765 222 23568999999999999999987532 234
Q ss_pred HHHHHHHHhcCcEEEEEe
Q 008748 272 NAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 272 ~~l~~l~~~~gw~vv~~~ 289 (555)
.++.+.+++. |+++...
T Consensus 266 ~~v~~~~~~~-f~~~~~~ 282 (288)
T TIGR00406 266 QSVCDAYEQG-FTVVEIR 282 (288)
T ss_pred HHHHHHHHcc-CceeeEe
Confidence 5666667666 8776543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-09 Score=113.48 Aligned_cols=129 Identities=18% Similarity=0.232 Sum_probs=83.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHH-----cCCCeEEEEeCCCCCCCCCCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALE-----RGIPSTLGVLGTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~-----rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~ 228 (555)
..+|||||||+|.++..|++. .|+++|+++.++..++.+.... ....+.+.+.|+..+ +++||+|+|...
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~v 221 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDV 221 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCE
Confidence 468999999999999999874 6889999988887766443221 023467777776544 478999999885
Q ss_pred ccccccch--HHHHHHHHhhcCCCcEEEEEcCCCCCCCh--h----------hHH----HHHHHHHHHHhcCcEEEEEe
Q 008748 229 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDP--E----------NRR----IWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 229 ~l~~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~~~~--e----------~~~----~~~~l~~l~~~~gw~vv~~~ 289 (555)
++|.++. ..+++.+.+ +.+||.++...|..+.... . ... .-+++++++++.||++...+
T Consensus 222 -L~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 222 -LIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARRE 298 (315)
T ss_pred -EEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence 4444433 235666664 4566665544444221100 0 000 12578899999999987544
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=108.92 Aligned_cols=130 Identities=15% Similarity=0.155 Sum_probs=89.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC----CCCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL----PYPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L----p~~d~sFDlVv~s~ 227 (555)
..+|||+|||+|.++..|++. .|+++|+++.++.... +.++++ .++.+..+|.... ++. .+||+|++..
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~ 149 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EKVDVIYQDV 149 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEEECC
Confidence 358999999999999999874 5889999988876554 344443 4677778886541 233 5699998543
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEcCCCC-CCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY-AHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~-~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
. .. .....++.++.|+|||||.++++.+... .........+++..+.+++.||+.+...+.
T Consensus 150 ~-~p--~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 150 A-QP--NQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred C-Ch--hHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcC
Confidence 1 11 1123468999999999999999654310 011112244566678999999999876664
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-10 Score=117.24 Aligned_cols=102 Identities=18% Similarity=0.330 Sum_probs=73.6
Q ss_pred CCCEEEEECCCCcH----HHHHHhc---------CCCccccCChhhhhHHHHHH----HHHc------------------
Q 008748 155 NIRNVLDVGCGVAS----FGAYLLS---------HDIIAMSLAPNDVHENQIQF----ALER------------------ 199 (555)
Q Consensus 155 ~~~~VLDIGCGtG~----~a~~La~---------~~V~~vdis~~dls~a~i~~----A~~r------------------ 199 (555)
+..+|||+|||+|. ++..|++ ..|+|+|+++.++..+.... +.+.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34689999999994 4444443 24777777777765554321 0000
Q ss_pred -----CCCeEEEEeCCCCCCCCCCCccEEEecccccccccch--HHHHHHHHhhcCCCcEEEEEc
Q 008748 200 -----GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 200 -----g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~--~~~L~el~RvLkPGG~lvis~ 257 (555)
...+.|.+.|+...++++++||+|+|.+ +++|.+++ ..+++++.++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crn-vl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRN-VLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEech-hHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 0247888999888887788999999988 56776544 569999999999999999954
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-10 Score=119.73 Aligned_cols=101 Identities=18% Similarity=0.233 Sum_probs=76.5
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
.+|||+|||+|.++..++++ .++++|+++.++..+..+.. ..+....+...|... ..++.||+|+|+. .+|+
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~-~n~l~~~~~~~D~~~--~~~~~fDlIvsNP-PFH~ 273 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLA-ANGLEGEVFASNVFS--DIKGRFDMIISNP-PFHD 273 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCEEEEccccc--ccCCCccEEEECC-CccC
Confidence 47999999999999998863 68899999988877765444 345566666666533 2257899999876 4654
Q ss_pred c-----cchHHHHHHHHhhcCCCcEEEEEcCCCC
Q 008748 233 L-----QRDGILLLELDRLLRPGGYFVYSSPEAY 261 (555)
Q Consensus 233 ~-----~d~~~~L~el~RvLkPGG~lvis~P~~~ 261 (555)
. ...+.++.++.+.|+|||.|+++.....
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l 307 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL 307 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCC
Confidence 2 2336799999999999999999886543
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.5e-10 Score=109.55 Aligned_cols=133 Identities=14% Similarity=0.299 Sum_probs=95.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC-CCCCCccEEEeccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-YPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp-~~d~sFDlVv~s~~~l~~ 232 (555)
..+|||||||+|.++..+++. .++++|+++..+..+..+.. ..+..+.+...+...++ ..+++||+|+++. .+++
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~-~l~~ 126 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHAL-ESGLKIDYRQTTAEELAAEHPGQFDVVTCME-MLEH 126 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHH-HcCCceEEEecCHHHhhhhcCCCccEEEEhh-Hhhc
Confidence 468999999999999888764 57888888777655543332 33445677777766654 3457899999987 5888
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCCh------------------hhHH---HHHHHHHHHHhcCcEEEEEee
Q 008748 233 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDP------------------ENRR---IWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~------------------e~~~---~~~~l~~l~~~~gw~vv~~~~ 290 (555)
..++..++..+.++|+|||.++++.+....... .... .-.++.+++++.||+++....
T Consensus 127 ~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~ 205 (233)
T PRK05134 127 VPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDITG 205 (233)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeeee
Confidence 888899999999999999999998764211000 0000 113688899999999886654
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-09 Score=109.35 Aligned_cols=146 Identities=18% Similarity=0.201 Sum_probs=92.5
Q ss_pred eCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHH
Q 008748 121 FPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFAL 197 (555)
Q Consensus 121 F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~ 197 (555)
..+.+..|..+.........+.+... .....+|||+|||+|.++..++.. .|+++|+++.++..+..+..
T Consensus 91 ~i~p~~afgtg~h~tt~~~l~~l~~~------~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~- 163 (250)
T PRK00517 91 ELDPGMAFGTGTHPTTRLCLEALEKL------VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAE- 163 (250)
T ss_pred EECCCCccCCCCCHHHHHHHHHHHhh------cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHH-
Confidence 33444455555544444444433311 023468999999999988877653 48899999888876664443
Q ss_pred HcCCCeEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHH
Q 008748 198 ERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDL 277 (555)
Q Consensus 198 ~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l 277 (555)
..+....+. ++..+.+||+|+++.. . .....++.++.++|||||+++++.... .....+...
T Consensus 164 ~~~~~~~~~------~~~~~~~fD~Vvani~-~---~~~~~l~~~~~~~LkpgG~lilsgi~~--------~~~~~v~~~ 225 (250)
T PRK00517 164 LNGVELNVY------LPQGDLKADVIVANIL-A---NPLLELAPDLARLLKPGGRLILSGILE--------EQADEVLEA 225 (250)
T ss_pred HcCCCceEE------EccCCCCcCEEEEcCc-H---HHHHHHHHHHHHhcCCCcEEEEEECcH--------hhHHHHHHH
Confidence 333321111 1122237999997642 1 223568899999999999999986432 234567788
Q ss_pred HHhcCcEEEEEeec
Q 008748 278 LKSMCWKIVSKKDQ 291 (555)
Q Consensus 278 ~~~~gw~vv~~~~~ 291 (555)
+++.||+++.....
T Consensus 226 l~~~Gf~~~~~~~~ 239 (250)
T PRK00517 226 YEEAGFTLDEVLER 239 (250)
T ss_pred HHHCCCEEEEEEEe
Confidence 89999998765443
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.3e-10 Score=109.73 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=69.6
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|||||||+|.++..|++. .++|+|+++.++ +.|+++...+.+.++|+.. |+++++||+|++.. +++
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l-----~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~-vL~ 116 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAV-----EKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKG-VLI 116 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHH-----HHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECC-hhh
Confidence 457999999999999988753 466666655544 5555555567788888777 88889999999887 566
Q ss_pred ccc--chHHHHHHHHhhcCCCcEEEEEc
Q 008748 232 WLQ--RDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 232 ~~~--d~~~~L~el~RvLkPGG~lvis~ 257 (555)
|+. +...+++++.|++ +++++++.
T Consensus 117 hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 117 HINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred hCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 664 2366899999997 56777755
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-09 Score=95.62 Aligned_cols=98 Identities=15% Similarity=0.044 Sum_probs=72.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC-CCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~-Lp~~d~sFDlVv~s~~~l 230 (555)
..+|||+|||+|.++..+++. .++++|+++..+..+..+.......++.+...|... ++...++||.|++... .
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~-~ 98 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS-G 98 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc-c
Confidence 358999999999999998863 688999988887666644433323457777777654 3333468999998653 2
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
+ ....+++++.++|+|||+|++..
T Consensus 99 ~---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 99 G---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred h---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 2 23578999999999999999854
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.07 E-value=3e-09 Score=106.28 Aligned_cols=122 Identities=20% Similarity=0.294 Sum_probs=86.1
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCCCCCCCccEEEeccccc-
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI- 230 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l- 230 (555)
.+|||+|||+|.++..++.. .++++|+++.++..+.... ...+. ++.+..+|... ++++++||+|+|+...+
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~-~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNA-ARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCc
Confidence 58999999999999999863 6889999988876665443 33343 47888888755 45668899999853111
Q ss_pred ----ccc--------------------cchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 231 ----DWL--------------------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 231 ----~~~--------------------~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
+.. .....++.++.++|+|||.+++.... ..-.++.+++++.||+.+
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~---------~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY---------DQGEAVRALFEAAGFADV 237 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc---------cHHHHHHHHHHhCCCCce
Confidence 000 01135789999999999999986532 112467788889999766
Q ss_pred EEe
Q 008748 287 SKK 289 (555)
Q Consensus 287 ~~~ 289 (555)
...
T Consensus 238 ~~~ 240 (251)
T TIGR03534 238 ETR 240 (251)
T ss_pred EEE
Confidence 543
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=108.77 Aligned_cols=96 Identities=18% Similarity=0.213 Sum_probs=69.5
Q ss_pred CCCEEEEECCCCcHHHHHHhc--------CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEec
Q 008748 155 NIRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCS 226 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~--------~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s 226 (555)
+..+|||+|||+|.++..|++ ..++++|+++.++..+..+.. ..++.+.+.+...++.++++||+|+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~---~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR---RPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc---cCCCeEEEEecccccccCCCccEEEEC
Confidence 346899999999999888764 157777777766644432211 234566667777777777899999998
Q ss_pred ccccccccch--HHHHHHHHhhcCCCcEEEEE
Q 008748 227 RCRIDWLQRD--GILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 227 ~~~l~~~~d~--~~~L~el~RvLkPGG~lvis 256 (555)
. ++||.+++ ..+++++.|+++ |.+++.
T Consensus 137 ~-~lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 137 H-FLHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred C-eeecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 8 58888775 469999999998 444443
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.7e-10 Score=108.34 Aligned_cols=101 Identities=21% Similarity=0.345 Sum_probs=72.1
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
...+++||+|||.|.++..|+.+ .++++|+++..+..+..+.+. ...+.+.+.+.... .|.++||+||++. +++
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~-~P~~~FDLIV~SE-VlY 117 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG--LPHVEWIQADVPEF-WPEGRFDLIVLSE-VLY 117 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT----SS-EEEEEEES--GG
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCC-CCCCCeeEEEEeh-HhH
Confidence 44568999999999999999986 788888877666444433221 35689999987654 4678999999998 788
Q ss_pred cccch---HHHHHHHHhhcCCCcEEEEEcC
Q 008748 232 WLQRD---GILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 232 ~~~d~---~~~L~el~RvLkPGG~lvis~P 258 (555)
|..+. ..++..+...|+|||.+++.+.
T Consensus 118 YL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 118 YLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 88653 4589999999999999999663
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=111.43 Aligned_cols=133 Identities=22% Similarity=0.224 Sum_probs=93.2
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHc-CCCe--EEEEeCCCCCCCCCCCccEEEeccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-GIPS--TLGVLGTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~r-g~~v--~~~~~d~~~Lp~~d~sFDlVv~s~~ 228 (555)
++++|||||||.|+++-.|+.+ .|+|+|.+..-. .+-+++++- +... .+.-..++.+|. .++||+|+|..
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~--~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MG- 190 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFY--LQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMG- 190 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHH--HHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEee-
Confidence 3479999999999999888864 588888776543 332333322 2222 233246788887 68999999988
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEEEEcC---CC-------CCCChhhHH-----HHHHHHHHHHhcCcEEEEEeec
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFVYSSP---EA-------YAHDPENRR-----IWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lvis~P---~~-------~~~~~e~~~-----~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
++.|..+|-..|.++...|+|||.+++-+- .. ..+...... .-..+...+++.||+.++..+.
T Consensus 191 VLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 191 VLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred ehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecC
Confidence 788999999999999999999999997431 10 001111111 1247888999999988876655
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.1e-09 Score=112.84 Aligned_cols=124 Identities=19% Similarity=0.156 Sum_probs=90.9
Q ss_pred CCEEEEECCCCcHHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccc-----
Q 008748 156 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRC----- 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~--~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~----- 228 (555)
..+|||+|||+|.++..++. ..++|+|+++.++..+..+.......++.+..+|+.++|+++++||+|++.-.
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~ 262 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRST 262 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCcc
Confidence 45899999999998776553 47889999998887776554333223467888999999988889999998521
Q ss_pred cccc--c-cchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 229 RIDW--L-QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 229 ~l~~--~-~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
.... . .-...++.++.|+|+|||++++..|... ++.++++..|| ++....+
T Consensus 263 ~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-----------~~~~~~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 263 TAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-----------DLESLAEDAFR-VVKRFEV 316 (329)
T ss_pred cccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-----------CHHHHHhhcCc-chheeee
Confidence 0110 1 1136689999999999999999887631 45567899999 6655443
|
This family is found exclusively in the Archaea. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-09 Score=111.04 Aligned_cols=150 Identities=19% Similarity=0.268 Sum_probs=97.0
Q ss_pred CCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHc
Q 008748 123 GGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER 199 (555)
Q Consensus 123 ~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~r 199 (555)
+.|-.|..|.........+.+.... .++++|||+|||+|.++...+. ..+.|+|+++..+..++.+ ++.+
T Consensus 136 DPGlAFGTG~HpTT~lcL~~Le~~~------~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eN-a~~N 208 (300)
T COG2264 136 DPGLAFGTGTHPTTSLCLEALEKLL------KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAREN-ARLN 208 (300)
T ss_pred ccccccCCCCChhHHHHHHHHHHhh------cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHH-HHHc
Confidence 3344555555554444444444221 2457999999999998887775 2699999999998777754 4444
Q ss_pred CCCeEEEEeCCCCCCCCC-CCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHH
Q 008748 200 GIPSTLGVLGTKRLPYPS-RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLL 278 (555)
Q Consensus 200 g~~v~~~~~d~~~Lp~~d-~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~ 278 (555)
+............+..+. +.||+|+++-. - .-...+..++.+.|||||++++|+--. ..-+.+.+.+
T Consensus 209 ~v~~~~~~~~~~~~~~~~~~~~DvIVANIL--A--~vl~~La~~~~~~lkpgg~lIlSGIl~--------~q~~~V~~a~ 276 (300)
T COG2264 209 GVELLVQAKGFLLLEVPENGPFDVIVANIL--A--EVLVELAPDIKRLLKPGGRLILSGILE--------DQAESVAEAY 276 (300)
T ss_pred CCchhhhcccccchhhcccCcccEEEehhh--H--HHHHHHHHHHHHHcCCCceEEEEeehH--------hHHHHHHHHH
Confidence 444211111122222333 58999997752 1 222568999999999999999987321 2234666777
Q ss_pred HhcCcEEEEEeec
Q 008748 279 KSMCWKIVSKKDQ 291 (555)
Q Consensus 279 ~~~gw~vv~~~~~ 291 (555)
++.||+++.....
T Consensus 277 ~~~gf~v~~~~~~ 289 (300)
T COG2264 277 EQAGFEVVEVLER 289 (300)
T ss_pred HhCCCeEeEEEec
Confidence 8889999876654
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-09 Score=116.34 Aligned_cols=132 Identities=13% Similarity=0.142 Sum_probs=85.8
Q ss_pred eeeeCCCCCCCCccH-HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHH
Q 008748 118 KINFPGGGTHFHDGA-DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQ 192 (555)
Q Consensus 118 ~~~F~~~g~~f~~~a-~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~ 192 (555)
.+.|.....-|.... +.-.+.+.+.++. ....+|||+|||+|.++..++++ .|+++|+++.++..++
T Consensus 198 ~~~~~~~~gVFs~~~LD~GtrllL~~lp~--------~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~ 269 (378)
T PRK15001 198 DWTIHNHANVFSRTGLDIGARFFMQHLPE--------NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSR 269 (378)
T ss_pred eEEEEecCCccCCCCcChHHHHHHHhCCc--------ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 344444444555432 2223444555542 11248999999999999998863 6889999988887776
Q ss_pred HHHHHHcC---CCeEEEEeCCCCCCCCCCCccEEEeccccccccc-----chHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 193 IQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ-----RDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 193 i~~A~~rg---~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~-----d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
.+...... .++.+...|.... ++.++||+|+|+- .+|... ...+++.++.++|+|||.|+++...
T Consensus 270 ~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNP-Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 270 LNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNP-PFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred HHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECc-CcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec
Confidence 55543321 2457776665322 2346899999875 344321 1256899999999999999998643
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-09 Score=104.62 Aligned_cols=123 Identities=20% Similarity=0.249 Sum_probs=84.4
Q ss_pred CEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC-C-CCCCCCccEEEecccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-L-PYPSRSFELAHCSRCRID 231 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~-L-p~~d~sFDlVv~s~~~l~ 231 (555)
.+|||||||+|.++..+++. .++++|+++.++ +.+.+++ +.+..+|+.. + ++++++||+|+|+. +++
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i-----~~a~~~~--~~~~~~d~~~~l~~~~~~sfD~Vi~~~-~l~ 86 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGV-----LACVARG--VNVIQGDLDEGLEAFPDKSFDYVILSQ-TLQ 86 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHH-----HHHHHcC--CeEEEEEhhhcccccCCCCcCEEEEhh-HhH
Confidence 48999999999999988753 345666655444 4444443 5667777654 4 47778999999987 689
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCC----------------------C-CC--hhhHHHHHHHHHHHHhcCcEEE
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAY----------------------A-HD--PENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~----------------------~-~~--~e~~~~~~~l~~l~~~~gw~vv 286 (555)
|+.++..+++++.|++++ ++++.|..- . .+ ........++.+++++.||+++
T Consensus 87 ~~~d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~ 163 (194)
T TIGR02081 87 ATRNPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRIL 163 (194)
T ss_pred cCcCHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEE
Confidence 999999999999888664 444433310 0 00 0011134578899999999988
Q ss_pred EEee
Q 008748 287 SKKD 290 (555)
Q Consensus 287 ~~~~ 290 (555)
....
T Consensus 164 ~~~~ 167 (194)
T TIGR02081 164 DRAA 167 (194)
T ss_pred EEEE
Confidence 6544
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.5e-10 Score=108.70 Aligned_cols=100 Identities=16% Similarity=0.041 Sum_probs=72.9
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHH------------HcCCCeEEEEeCCCCCCCC-CCCcc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFAL------------ERGIPSTLGVLGTKRLPYP-SRSFE 221 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~------------~rg~~v~~~~~d~~~Lp~~-d~sFD 221 (555)
.+|||+|||.|..+.+|+++ .|+|+|+|+..+..++.+... .++.++.+.++|+..++.. .+.||
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD 115 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVD 115 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcC
Confidence 58999999999999999986 788999988877654321100 1234678899998877642 35799
Q ss_pred EEEecccccccccch-HHHHHHHHhhcCCCcEEEEE
Q 008748 222 LAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 222 lVv~s~~~l~~~~d~-~~~L~el~RvLkPGG~lvis 256 (555)
.|+...+.++..++. ..++..+.++|||||++++.
T Consensus 116 ~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 116 AVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred EEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 999776434332222 45899999999999976654
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-09 Score=105.97 Aligned_cols=118 Identities=19% Similarity=0.308 Sum_probs=88.6
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCC-CCCCCCCCCccEEEecccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~-~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
...-|||||||+|..+..|.+. ..+|+|||+.|++.++. +.....+..+|+ +.+||..++||.|++.. +++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~-----~e~egdlil~DMG~GlpfrpGtFDg~ISIS-AvQ 123 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE-----RELEGDLILCDMGEGLPFRPGTFDGVISIS-AVQ 123 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH-----hhhhcCeeeeecCCCCCCCCCccceEEEee-eee
Confidence 5678999999999999888763 67799999988876653 222334555663 78999999999999766 688
Q ss_pred cccc-------h----HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcE
Q 008748 232 WLQR-------D----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 284 (555)
Q Consensus 232 ~~~d-------~----~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~ 284 (555)
|.-+ + ..++..++.+|++|+..++. ..++.....+-+..-+..+||.
T Consensus 124 WLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q------fYpen~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 124 WLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ------FYPENEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred eecccCccccChHHHHHHHhhhhhhhhccCceeEEE------ecccchHHHHHHHHHHHhhccC
Confidence 8733 2 23788899999999999984 3344445566677778888884
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.5e-09 Score=100.91 Aligned_cols=124 Identities=15% Similarity=0.182 Sum_probs=86.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCC---eEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIP---STLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~---v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
..+|||+|||+|.++..++.. .++++|+++.++..++.+.. ..+.. +.+...|... ++.+++||+|+++....
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAK-LNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYL 101 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHH-HcCCCCcceEEEeccccc-cccccCceEEEECCCcC
Confidence 358999999999999988854 78889998887766654433 33322 6777777644 34456899999764211
Q ss_pred cc--------------------ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 231 DW--------------------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 231 ~~--------------------~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
.. ......+++++.++|+|||.+++..+... ..+.+.+++++.||++....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~--------~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT--------GEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC--------CHHHHHHHHHHCCCeeeeee
Confidence 10 01124579999999999999998776532 12357788999999876443
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.2e-09 Score=102.34 Aligned_cols=121 Identities=17% Similarity=0.138 Sum_probs=83.5
Q ss_pred CEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
.+|||+|||+|.++..++.. .++++|+++.++..++.+. ...+.++.+...|+... +++++||+|+++-......
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~-~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~~~~ 115 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNA-LLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYVPAP 115 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHH-HHhCCeeEEEECchhhh-ccCCCeeEEEECCCCCCCC
Confidence 58999999999999888763 6789999988776655333 33455677777776543 4567899999863211110
Q ss_pred c--------------------chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEE
Q 008748 234 Q--------------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 234 ~--------------------d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~ 287 (555)
. ....++.++.++|||||.+++..+... ...++.+.+++.||.+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--------~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 116 PDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--------GVERTLTRLSEAGLDAEV 181 (223)
T ss_pred cccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--------CHHHHHHHHHHCCCCeEE
Confidence 0 124578899999999999998765431 123566677888886543
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-09 Score=102.72 Aligned_cols=78 Identities=12% Similarity=0.118 Sum_probs=63.3
Q ss_pred ccccCChhhhhHHHHHHHHHc---CCCeEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEE
Q 008748 179 IAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 255 (555)
Q Consensus 179 ~~vdis~~dls~a~i~~A~~r---g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvi 255 (555)
+|+|+|+.|+..+..+..... ..++.+.++|+.++|+++++||+|++++ ++++.+++..+++|++|+|||||.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~-~l~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGY-GLRNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecc-hhhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 478888888766653322111 2358899999999999999999999887 688889999999999999999999997
Q ss_pred Ec
Q 008748 256 SS 257 (555)
Q Consensus 256 s~ 257 (555)
.+
T Consensus 80 ~d 81 (160)
T PLN02232 80 LD 81 (160)
T ss_pred EE
Confidence 65
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.6e-09 Score=106.25 Aligned_cols=131 Identities=12% Similarity=0.087 Sum_probs=87.3
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC---CCCCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR---LPYPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~---Lp~~d~sFDlVv~s~ 227 (555)
..+|||+|||+|.++.++++. .|+++|+++.+. ..+++.+.++ .++.+++.|+.. +.....+||+|++..
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~-~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv 210 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG-RDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFADV 210 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEeC
Confidence 468999999999999999864 588999986544 2344555544 567788888643 222345799999765
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEcCCCC-CCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY-AHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~-~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
. ...+...++.++.++|||||+|+|...... ...+...+.+.+-.+.+++.||+.++..+.
T Consensus 211 a---~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L 272 (293)
T PTZ00146 211 A---QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTL 272 (293)
T ss_pred C---CcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEec
Confidence 2 123334577899999999999999654321 111112223333337789999998765553
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.4e-09 Score=102.66 Aligned_cols=131 Identities=20% Similarity=0.217 Sum_probs=84.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC-CCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
..+|||||||+|.++..|++. .++++|+++.++..++........ ..+.+..+| ++..+++||+|++.. +++|
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~-~l~~ 139 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLD-VLIH 139 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcc-hhhc
Confidence 468999999999999999864 688888888887766644433221 256777777 344468899999887 4544
Q ss_pred cc--chHHHHHHHHhhcCCCcEEEEEcCCCC------------C-CChh-hH--HHHHHHHHHHHhcCcEEEEEeec
Q 008748 233 LQ--RDGILLLELDRLLRPGGYFVYSSPEAY------------A-HDPE-NR--RIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 233 ~~--d~~~~L~el~RvLkPGG~lvis~P~~~------------~-~~~e-~~--~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
.+ +...+++++.+++++++.+.+ .+... . .... .. ..-.++.++++..||++...+..
T Consensus 140 ~~~~~~~~~l~~l~~~~~~~~~i~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 215 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRGSLIFTF-APYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERI 215 (230)
T ss_pred CCHHHHHHHHHHHHhhcCCeEEEEE-CCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeec
Confidence 43 335678888887765544433 22210 0 0000 00 01236778899999988876554
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.4e-09 Score=107.44 Aligned_cols=99 Identities=20% Similarity=0.325 Sum_probs=71.8
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEeccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~ 228 (555)
+..+|||||||+|.++..++++ +++++|+ +..+..+. +.+.+.+. ++.+..+|+...+++. +|+|++++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~- 223 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVN-ENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCR- 223 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHH-HHHHhCCccceEEEEecCccCCCCCC--CCEEEeEh-
Confidence 3469999999999999998864 4677776 44444333 33334443 4788888987666653 69998887
Q ss_pred ccccccch--HHHHHHHHhhcCCCcEEEEEcC
Q 008748 229 RIDWLQRD--GILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 229 ~l~~~~d~--~~~L~el~RvLkPGG~lvis~P 258 (555)
++|...+. ..++++++++|+|||++++...
T Consensus 224 ~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 45544332 5689999999999999999753
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-09 Score=111.16 Aligned_cols=154 Identities=19% Similarity=0.262 Sum_probs=101.7
Q ss_pred CceeeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHH
Q 008748 116 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQ 192 (555)
Q Consensus 116 ~e~~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~ 192 (555)
++.......|..|..|.....+...+++.... .++.+|||+|||+|.++...+. ..|+++|+++..+..++
T Consensus 128 ~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~------~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~ 201 (295)
T PF06325_consen 128 DEIVIEIDPGMAFGTGHHPTTRLCLELLEKYV------KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR 201 (295)
T ss_dssp TSEEEEESTTSSS-SSHCHHHHHHHHHHHHHS------STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH
T ss_pred CcEEEEECCCCcccCCCCHHHHHHHHHHHHhc------cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH
Confidence 34555667778899998877776666665321 2336999999999988777664 36999999999887777
Q ss_pred HHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHH
Q 008748 193 IQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWN 272 (555)
Q Consensus 193 i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~ 272 (555)
.+. ..++....+.+..... ...+.||+|+++-. ..-...++..+.++|+|||+|++|+--. ...+
T Consensus 202 ~N~-~~N~~~~~~~v~~~~~--~~~~~~dlvvANI~----~~vL~~l~~~~~~~l~~~G~lIlSGIl~--------~~~~ 266 (295)
T PF06325_consen 202 ENA-ELNGVEDRIEVSLSED--LVEGKFDLVVANIL----ADVLLELAPDIASLLKPGGYLILSGILE--------EQED 266 (295)
T ss_dssp HHH-HHTT-TTCEEESCTSC--TCCS-EEEEEEES-----HHHHHHHHHHCHHHEEEEEEEEEEEEEG--------GGHH
T ss_pred HHH-HHcCCCeeEEEEEecc--cccccCCEEEECCC----HHHHHHHHHHHHHhhCCCCEEEEccccH--------HHHH
Confidence 554 4455544544432222 33488999997641 1222457888999999999999987332 2234
Q ss_pred HHHHHHHhcCcEEEEEeec
Q 008748 273 AMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 273 ~l~~l~~~~gw~vv~~~~~ 291 (555)
.+.+.+++ ||+++.....
T Consensus 267 ~v~~a~~~-g~~~~~~~~~ 284 (295)
T PF06325_consen 267 EVIEAYKQ-GFELVEEREE 284 (295)
T ss_dssp HHHHHHHT-TEEEEEEEEE
T ss_pred HHHHHHHC-CCEEEEEEEE
Confidence 66666776 9998876553
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.2e-09 Score=101.91 Aligned_cols=116 Identities=13% Similarity=0.102 Sum_probs=84.2
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCC-CCCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRL-PYPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~L-p~~d~sFDlVv~s~ 227 (555)
..+|||+|||+|.++..++. ..|+++|+++.++..++.+. +..+ .++.+..+|.... +..++.||+|++..
T Consensus 41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~-~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNA-EKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 35899999999999887653 26899999998876665443 3333 3577777887553 33346899999743
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcE
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 284 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~ 284 (555)
...+...++.++.++|+|||++++..... ....++...+++.||.
T Consensus 120 ----~~~~~~~~l~~~~~~LkpgG~lv~~~~~~--------~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 120 ----GSEKLKEIISASWEIIKKGGRIVIDAILL--------ETVNNALSALENIGFN 164 (198)
T ss_pred ----CcccHHHHHHHHHHHcCCCcEEEEEeecH--------HHHHHHHHHHHHcCCC
Confidence 12455779999999999999999855432 3456777888889984
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-09 Score=109.98 Aligned_cols=161 Identities=17% Similarity=0.205 Sum_probs=103.7
Q ss_pred CceeeeCCCCCCCCccH-HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhH
Q 008748 116 GEKINFPGGGTHFHDGA-DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHE 190 (555)
Q Consensus 116 ~e~~~F~~~g~~f~~~a-~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~ 190 (555)
+..+.|......|.... +.=.+.+.+.++.. . ..+|||+|||.|.++..|++. .++-+|++...+..
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~-------~-~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ 197 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPPD-------L-GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVES 197 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHHHHHhCCcc-------C-CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHH
Confidence 44566666666666554 33344555655532 1 238999999999999999964 67788888888877
Q ss_pred HHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccccch-----HHHHHHHHhhcCCCcEEEEEcCCCCCCCh
Q 008748 191 NQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD-----GILLLELDRLLRPGGYFVYSSPEAYAHDP 265 (555)
Q Consensus 191 a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~-----~~~L~el~RvLkPGG~lvis~P~~~~~~~ 265 (555)
++.+.+........+...|. ..+..+ +||+|+|+- .+|--.+. .+++.+..+.|++||.|.|+......+..
T Consensus 198 ar~Nl~~N~~~~~~v~~s~~-~~~v~~-kfd~IisNP-Pfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~ 274 (300)
T COG2813 198 ARKNLAANGVENTEVWASNL-YEPVEG-KFDLIISNP-PFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEK 274 (300)
T ss_pred HHHhHHHcCCCccEEEEecc-cccccc-cccEEEeCC-CccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHH
Confidence 77665554433333444443 334444 899999875 35432222 36899999999999999999875544433
Q ss_pred hhHHHHHHHHHHHHhcCcEEEE
Q 008748 266 ENRRIWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 266 e~~~~~~~l~~l~~~~gw~vv~ 287 (555)
...+.|...+.+++..||.+..
T Consensus 275 ~L~~~Fg~v~~la~~~gf~Vl~ 296 (300)
T COG2813 275 KLKELFGNVEVLAKNGGFKVLR 296 (300)
T ss_pred HHHHhcCCEEEEEeCCCEEEEE
Confidence 3334444555555566665543
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.1e-09 Score=102.68 Aligned_cols=94 Identities=16% Similarity=0.106 Sum_probs=70.1
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~ 228 (555)
..+|||||||+|.++..+++ ..|+++|+++.++..+..++. ..+. .+.+..+|........++||+|++...
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~-~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~ 151 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIE-RLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAA 151 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEECCcccCCccCCCccEEEEccC
Confidence 35899999999999988774 368899999887766654433 3343 378888887665445578999998763
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
+++ +..++.++|+|||++++..
T Consensus 152 -~~~------~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 152 -AST------IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred -cch------hhHHHHHhcCcCcEEEEEE
Confidence 443 3467889999999999854
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.3e-09 Score=106.39 Aligned_cols=166 Identities=17% Similarity=0.253 Sum_probs=110.6
Q ss_pred hhhhhcCceeeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhh
Q 008748 110 HWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPND 187 (555)
Q Consensus 110 ~W~~~~~e~~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~d 187 (555)
+|.....+...+.+.|.+|--..+++.+.+...- ....+.....++||||+|.|..+..|+.. .|.+.++|+.|
T Consensus 53 ~~f~S~T~iNG~LgRG~MFvfS~~Q~~~LL~~~~----~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~M 128 (265)
T PF05219_consen 53 SWFMSKTDINGILGRGSMFVFSEEQFRKLLRISG----FSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPM 128 (265)
T ss_pred HHHHhHHhHhhhhcCCcEEEecHHHHHHHhhhhc----cCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHH
Confidence 3444455667778888888888777765554221 11122234568999999999999999874 67777776655
Q ss_pred hhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEc--CCC-----
Q 008748 188 VHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS--PEA----- 260 (555)
Q Consensus 188 ls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~--P~~----- 260 (555)
...-+++|.. +.+..+..-.+.+||+|.|.+ ++.-..+|..+|+++++.|+|+|.++++. |..
T Consensus 129 -----r~rL~~kg~~----vl~~~~w~~~~~~fDvIscLN-vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~ 198 (265)
T PF05219_consen 129 -----RWRLSKKGFT----VLDIDDWQQTDFKFDVISCLN-VLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEF 198 (265)
T ss_pred -----HHHHHhCCCe----EEehhhhhccCCceEEEeehh-hhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEc
Confidence 3455566654 233333333346799999998 68888999999999999999999999864 210
Q ss_pred ----CCCChhh--------HHHHHHHHHHHHhcCcEEEEEe
Q 008748 261 ----YAHDPEN--------RRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 261 ----~~~~~e~--------~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
.....+. .+.-..+.++++.+||++....
T Consensus 199 ~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~t 239 (265)
T PF05219_consen 199 GGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWT 239 (265)
T ss_pred CCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 0011110 1122345588999999988544
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.6e-09 Score=113.79 Aligned_cols=101 Identities=19% Similarity=0.245 Sum_probs=80.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC--CCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL--PYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L--p~~d~sFDlVv~s~~~ 229 (555)
...+||||||+|.++..+|.. .++|+|++..++..+..+.....-.++.+..+|+..+ .++++++|.|++.+ .
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF-P 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF-P 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC-C
Confidence 358999999999999999963 7899999998887776554433334688888887654 47789999999776 4
Q ss_pred cccccch------HHHHHHHHhhcCCCcEEEEEc
Q 008748 230 IDWLQRD------GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 230 l~~~~d~------~~~L~el~RvLkPGG~lvis~ 257 (555)
.+|.... ..++.++.|+|+|||.+.+.+
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 6665433 468999999999999999965
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.2e-09 Score=102.22 Aligned_cols=95 Identities=13% Similarity=0.049 Sum_probs=70.8
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
..+|||||||+|+++..|++ ..|+++|+++..+..++.+.......++.+..+|......+.+.||+|++... .
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~-~ 155 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAA-G 155 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCC-c
Confidence 46899999999999988774 26889999988876666444332233588899997666556688999997663 3
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
+. ....+.+.|||||.+++..
T Consensus 156 ~~------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 156 PD------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cc------chHHHHHhhCCCcEEEEEE
Confidence 32 3456778999999999854
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1e-08 Score=97.30 Aligned_cols=123 Identities=21% Similarity=0.281 Sum_probs=92.0
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCC--eEEEEeCCCCCCCCCCCccEEEecc--c
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSR--C 228 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~--v~~~~~d~~~Lp~~d~sFDlVv~s~--~ 228 (555)
.+|||+|||.|.+...|++. ..+|+|+++..+.-|+ ++|+..+.. +.|.+.|+..-.+..+.||+|+--. .
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~-niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQ-NIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHH-HHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 38999999999999999974 4788999888776654 677766665 8999999877677778899988532 1
Q ss_pred cccccc-----chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 229 RIDWLQ-----RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 229 ~l~~~~-----d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
++...+ .+..++..+.++|+|||+|+|+.-+. ..+++.+.++..+|+.....
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~---------T~dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF---------TKDELVEEFENFNFEYLSTV 204 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc---------cHHHHHHHHhcCCeEEEEee
Confidence 222221 12347899999999999999988663 24578888888888776443
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=1e-08 Score=101.16 Aligned_cols=94 Identities=16% Similarity=0.119 Sum_probs=70.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcC-CCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
..+|||||||+|.++..|++. .|+++|+++..+..+..++ .+.+ .++.+..+|........+.||+|++...
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~-~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~- 155 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRL-RKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAA- 155 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH-HHCCCCCeEEEECCcccCCcccCCCCEEEEcCC-
Confidence 468999999999999988863 2889999988876666444 3334 3578888887655444468999997653
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
.. .+...+.+.|+|||++++..
T Consensus 156 ~~------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 156 GP------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred cc------cccHHHHHhcCcCcEEEEEE
Confidence 32 24567889999999999854
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-09 Score=107.63 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=78.5
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEE-------eCCCCCCCCCCCccEEEecc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGV-------LGTKRLPYPSRSFELAHCSR 227 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~-------~d~~~Lp~~d~sFDlVv~s~ 227 (555)
+.++|+|||+|..+..+++. +|+++|++..|+ ++|.+. .++.... .+...|--.+++.|+|+|..
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL-----~~a~k~-~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAML-----KVAKKH-PPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHHHH-----HHhhcC-CCcccccCCccccccccccccCCCcceeeehhhh
Confidence 48999999999777777764 788887766555 566554 3332222 22233333489999999999
Q ss_pred cccccccchHHHHHHHHhhcCCCc-EEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcE
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 284 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG-~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~ 284 (555)
| +||... +.+++++.|+||+.| .+++ |.+.. +...|.++..++.+.++.
T Consensus 109 a-~HWFdl-e~fy~~~~rvLRk~Gg~iav-----W~Y~d-d~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 109 A-VHWFDL-ERFYKEAYRVLRKDGGLIAV-----WNYND-DFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred h-HHhhch-HHHHHHHHHHcCCCCCEEEE-----EEccC-CCcCCHHHHHHHHHHhhc
Confidence 5 999754 679999999999877 5554 11111 234577888888888775
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=4e-08 Score=105.43 Aligned_cols=124 Identities=12% Similarity=0.065 Sum_probs=86.5
Q ss_pred CEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCC-CCCCccEEEecccccc
Q 008748 157 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY-PSRSFELAHCSRCRID 231 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~-~d~sFDlVv~s~~~l~ 231 (555)
.+|||+|||+|.++..++. ..++++|+++.++..++.+. ...+.++.+..+|.....+ ..++||+|+|+-..+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa-~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNA-ADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 4899999999999988874 36889999998887776443 3445678888888754333 2357999998532111
Q ss_pred cc--------------------cc----hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEE
Q 008748 232 WL--------------------QR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 232 ~~--------------------~d----~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~ 287 (555)
-. ++ ...++.++.+.|+|||.+++.... ..-+.+.+++++.||..+.
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~---------~Q~e~V~~ll~~~Gf~~v~ 402 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF---------DQGAAVRGVLAENGFSGVE 402 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc---------cHHHHHHHHHHHCCCcEEE
Confidence 00 01 134677778899999999885533 1234778888889997665
Q ss_pred Eee
Q 008748 288 KKD 290 (555)
Q Consensus 288 ~~~ 290 (555)
...
T Consensus 403 v~k 405 (423)
T PRK14966 403 TLP 405 (423)
T ss_pred EEE
Confidence 443
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.3e-09 Score=102.37 Aligned_cols=98 Identities=15% Similarity=0.062 Sum_probs=71.2
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHH------------HcCCCeEEEEeCCCCCCCC-CCCcc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFAL------------ERGIPSTLGVLGTKRLPYP-SRSFE 221 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~------------~rg~~v~~~~~d~~~Lp~~-d~sFD 221 (555)
.+|||+|||.|..+..|+++ .|+|+|+++..+..++.+... .....+.+.++|+..++.. .+.||
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd 118 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVD 118 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCee
Confidence 58999999999999999986 788998888877654321110 0134577888998777533 25799
Q ss_pred EEEecccccccccch--HHHHHHHHhhcCCCcEEEE
Q 008748 222 LAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVY 255 (555)
Q Consensus 222 lVv~s~~~l~~~~d~--~~~L~el~RvLkPGG~lvi 255 (555)
+|+-..+ +++++.. ..++..+.++|+|||++++
T Consensus 119 ~v~D~~~-~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 119 AVYDRAA-LIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred EEEehHh-HhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 9997664 4444322 5689999999999997554
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-08 Score=104.03 Aligned_cols=102 Identities=9% Similarity=0.132 Sum_probs=75.8
Q ss_pred CCCEEEEECCCCcHHHHHH-hc-----CCCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEec
Q 008748 155 NIRNVLDVGCGVASFGAYL-LS-----HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCS 226 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~L-a~-----~~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s 226 (555)
.+++|+|||||.|.++..+ +. ..++++|+++.++..++..+....+ ..+.|..+|+.+++...+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 4579999999988554443 32 2588999999888777644433233 45899999987764334789999987
Q ss_pred ccccccc-cchHHHHHHHHhhcCCCcEEEEEc
Q 008748 227 RCRIDWL-QRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 227 ~~~l~~~-~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
+.++|. ++...++..+.+.|+|||++++-.
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 444443 677889999999999999999965
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-08 Score=84.46 Aligned_cols=98 Identities=23% Similarity=0.356 Sum_probs=72.0
Q ss_pred EEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCC-CCCCccEEEeccccccc-
Q 008748 158 NVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY-PSRSFELAHCSRCRIDW- 232 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~-~d~sFDlVv~s~~~l~~- 232 (555)
+|||+|||+|.++..++. ..++++|+++..+..+.............+...|...... ..++||+|++.. .+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~-~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDP-PLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEcc-ceeeh
Confidence 489999999999988886 3677888777655443321111223456777788766553 457899999887 4666
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEE
Q 008748 233 LQRDGILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPGG~lvis 256 (555)
......++..+.+.|+|||.++++
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 667788999999999999999985
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.4e-08 Score=93.14 Aligned_cols=99 Identities=13% Similarity=0.027 Sum_probs=70.2
Q ss_pred CCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC-CCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~-Lp~~d~sFDlVv~s~~~l 230 (555)
..+|||+|||+|.++..++. ..|+++|+++.++..++.+.......++.+..+|+.. ++.....+|.|+...
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~--- 117 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG--- 117 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC---
Confidence 35899999999999988864 3689999999888776654433322357787777643 222223467765322
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
..+...++.++.++|+|||++++..+.
T Consensus 118 --~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 118 --GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred --CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 234467999999999999999998754
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-09 Score=94.83 Aligned_cols=102 Identities=25% Similarity=0.357 Sum_probs=72.8
Q ss_pred CEEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCC--CCCCCccEEEeccccc
Q 008748 157 RNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLP--YPSRSFELAHCSRCRI 230 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp--~~d~sFDlVv~s~~~l 230 (555)
.+|||+|||+|.++..+++ ..++++|+++..+..+..++.... ..++.+.++|...+. +++++||+|+++--..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYG 81 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STT
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCc
Confidence 4799999999999988875 467888888876655554443322 246899999976665 7788999999865322
Q ss_pred cccc-------chHHHHHHHHhhcCCCcEEEEEcC
Q 008748 231 DWLQ-------RDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 231 ~~~~-------d~~~~L~el~RvLkPGG~lvis~P 258 (555)
.... ....+++++.++|||||.+++..|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 82 PRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp SBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 2111 124689999999999999999775
|
... |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.7e-08 Score=103.29 Aligned_cols=101 Identities=16% Similarity=0.260 Sum_probs=70.7
Q ss_pred CEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCC-CCCCCCC---ccEEEec
Q 008748 157 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKR-LPYPSRS---FELAHCS 226 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~-Lp~~d~s---FDlVv~s 226 (555)
.+|||+|||+|..+..|+++ .++++|+|+.++..++.+..... +.++.+.++|+.+ ++++... .++++..
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~ 144 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFP 144 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEe
Confidence 58999999999999888753 58889998888877765544332 3456678888765 4444332 2334433
Q ss_pred ccccccccc--hHHHHHHHHhhcCCCcEEEEEc
Q 008748 227 RCRIDWLQR--DGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 227 ~~~l~~~~d--~~~~L~el~RvLkPGG~lvis~ 257 (555)
.+.+++.+. ...+|+++.++|+|||.|+|..
T Consensus 145 gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 145 GSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred cccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 334555543 3558999999999999999865
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.1e-08 Score=99.01 Aligned_cols=123 Identities=20% Similarity=0.238 Sum_probs=83.3
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|||+|||+|.++..++.. .++++|+++.++..+..+.......++.+..+|... ++++++||+|+++...+.
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~ 187 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIP 187 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCC
Confidence 458999999999999988753 688899988877666644431223467888888633 233578999998521110
Q ss_pred -------------c------------ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 232 -------------W------------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 232 -------------~------------~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
+ ......++.++.++|+|||++++.... ..-..+.+++++.||..+
T Consensus 188 ~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~---------~~~~~~~~~l~~~gf~~v 258 (275)
T PRK09328 188 EADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY---------DQGEAVRALLAAAGFADV 258 (275)
T ss_pred cchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc---------hHHHHHHHHHHhCCCcee
Confidence 0 011245788888999999999985422 112357778888999754
Q ss_pred EE
Q 008748 287 SK 288 (555)
Q Consensus 287 ~~ 288 (555)
..
T Consensus 259 ~~ 260 (275)
T PRK09328 259 ET 260 (275)
T ss_pred EE
Confidence 43
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.4e-08 Score=94.98 Aligned_cols=132 Identities=19% Similarity=0.252 Sum_probs=82.9
Q ss_pred EEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCC-e-EEEEeCCCCC--CC------CCCCccEE
Q 008748 158 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP-S-TLGVLGTKRL--PY------PSRSFELA 223 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~-v-~~~~~d~~~L--p~------~d~sFDlV 223 (555)
+|||||||||..+.+++++ .....|++..... .......+.+.+ + .-...|+..- +. ..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~-sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRP-SIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHh-hHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 6999999999999999875 1223344333211 111122222221 1 1122333222 22 34689999
Q ss_pred Eecccccccccch--HHHHHHHHhhcCCCcEEEEEcCCCCC--CChh----------------hHHHHHHHHHHHHhcCc
Q 008748 224 HCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYA--HDPE----------------NRRIWNAMYDLLKSMCW 283 (555)
Q Consensus 224 v~s~~~l~~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~--~~~e----------------~~~~~~~l~~l~~~~gw 283 (555)
+|.+ .+|..+-. +.+++.+.++|++||.|++-+|..+. +..+ ..+..+++.+++.+.|+
T Consensus 107 ~~~N-~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 107 FCIN-MLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eehh-HHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 9999 57766443 55999999999999999999987532 1111 12233588999999999
Q ss_pred EEEEEeec
Q 008748 284 KIVSKKDQ 291 (555)
Q Consensus 284 ~vv~~~~~ 291 (555)
.+.+...+
T Consensus 186 ~l~~~~~M 193 (204)
T PF06080_consen 186 ELEEDIDM 193 (204)
T ss_pred ccCccccc
Confidence 98877666
|
The function of this family is unknown. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.7e-08 Score=99.61 Aligned_cols=121 Identities=15% Similarity=0.190 Sum_probs=83.9
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
..+|||+|||+|.++..++.. .++++|+++.++..++.+. ...+. ++.+..+|... ++++++||+|+|+--.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~-~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINI-ERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 358999999999999999863 6889999988887776443 33443 47888888633 2345689999985110
Q ss_pred ------------ccccc------------chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEE
Q 008748 230 ------------IDWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 285 (555)
Q Consensus 230 ------------l~~~~------------d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~v 285 (555)
+++.+ ....++.++.++|+|||++++..... +..+.+++.+.+|.-
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~----------~~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS----------MEALEEAYPDVPFTW 269 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcC----------HHHHHHHHHhCCCce
Confidence 01110 11457899999999999999866431 246777788888755
Q ss_pred EEE
Q 008748 286 VSK 288 (555)
Q Consensus 286 v~~ 288 (555)
...
T Consensus 270 ~~~ 272 (284)
T TIGR03533 270 LEF 272 (284)
T ss_pred eee
Confidence 443
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.7e-08 Score=95.37 Aligned_cols=96 Identities=14% Similarity=0.019 Sum_probs=69.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
..+|||+|||+|.++..|+.. .++++|+++..+..+..++.+....++.+..+|......+.++||+|++... .++
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~-~~~- 156 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA-APE- 156 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC-chh-
Confidence 468999999999998877653 6888999887776665444433223578888886443223478999998763 433
Q ss_pred cchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 234 QRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 234 ~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
+..++.+.|+|||.+++...
T Consensus 157 -----~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 157 -----IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred -----hhHHHHHhcCCCcEEEEEEc
Confidence 35678899999999998654
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.1e-08 Score=94.05 Aligned_cols=91 Identities=19% Similarity=0.193 Sum_probs=64.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--------CCCCCccE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--------~~d~sFDl 222 (555)
..+|||+|||+|.++..++.. .|+++|+++.. ...++.+..+|..+.+ +++++||+
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~ 101 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDV 101 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCccE
Confidence 468999999999998887653 48888888743 1235667777765542 45678999
Q ss_pred EEecccc-------cccc---cchHHHHHHHHhhcCCCcEEEEEc
Q 008748 223 AHCSRCR-------IDWL---QRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 223 Vv~s~~~-------l~~~---~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
|++..+. +++. .....++.++.++|+|||++++..
T Consensus 102 V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 102 VMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9975421 1111 112568999999999999999965
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.5e-08 Score=95.39 Aligned_cols=111 Identities=18% Similarity=0.262 Sum_probs=72.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC-CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 234 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~ 234 (555)
...|-|+|||.+.++..+... .|...|+... +-.+..+|+..+|+++++.|++++..+ |. ..
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~svDv~VfcLS-LM-GT 135 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLEDESVDVAVFCLS-LM-GT 135 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S---EEEEESS-S---------------STTEEES-TTS-S--TT-EEEEEEES-----SS
T ss_pred CEEEEECCCchHHHHHhcccCceEEEeeccCC---------------CCCEEEecCccCcCCCCceeEEEEEhh-hh-CC
Confidence 358999999999999887643 4666666432 113567899999999999999997764 32 36
Q ss_pred chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 235 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 235 d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
+...++.|+.|+|||||.|.|+...... ..-+.+.+.++++||++....
T Consensus 136 n~~~fi~EA~RvLK~~G~L~IAEV~SRf------~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 136 NWPDFIREANRVLKPGGILKIAEVKSRF------ENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEGGG-------S-HHHHHHHHHCTTEEEEEEE
T ss_pred CcHHHHHHHHheeccCcEEEEEEecccC------cCHHHHHHHHHHCCCeEEecc
Confidence 7788999999999999999997644311 123578888999999988653
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-07 Score=98.05 Aligned_cols=121 Identities=14% Similarity=0.241 Sum_probs=82.6
Q ss_pred CEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEeccc--
Q 008748 157 RNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC-- 228 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~-- 228 (555)
.+|||+|||+|.++..++. ..++++|+++..+..+..+. ...+. ++.+..+|... ++++++||+|+++--
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~-~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENA-EKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 5899999999999999885 36889999988887666443 33343 37888888644 344458999998511
Q ss_pred ----------cccccc------------chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHH-hcCcEE
Q 008748 229 ----------RIDWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLK-SMCWKI 285 (555)
Q Consensus 229 ----------~l~~~~------------d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~-~~gw~v 285 (555)
.+.|.+ ....++.++.+.|+|||++++..... .-..+.+++. ..+|..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~---------q~~~~~~~~~~~~~~~~ 264 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW---------QQKSLKELLRIKFTWYD 264 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc---------HHHHHHHHHHhcCCCce
Confidence 111211 23457899999999999999866542 1235566666 467865
Q ss_pred EEE
Q 008748 286 VSK 288 (555)
Q Consensus 286 v~~ 288 (555)
+..
T Consensus 265 ~~~ 267 (284)
T TIGR00536 265 VEN 267 (284)
T ss_pred eEE
Confidence 443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.69 E-value=4e-07 Score=92.21 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=81.3
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC-CCC-CCCCccEEEeccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPY-PSRSFELAHCSRCRI 230 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~-Lp~-~d~sFDlVv~s~~~l 230 (555)
.+|||+|||+|.++..++.. .++++|+++.++..++.+.. ..+ ..+..+|... ++- ..++||+|+++--.+
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~-~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLA-DAG--GTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcC--CEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 48999999999999988752 68899999888866664433 333 4677777643 221 125799999763211
Q ss_pred c-------------cc--------cc----hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEE
Q 008748 231 D-------------WL--------QR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 285 (555)
Q Consensus 231 ~-------------~~--------~d----~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~v 285 (555)
. +. .+ ...++..+.++|+|||.+++..... ...++..++++.||..
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~---------~~~~v~~~l~~~g~~~ 235 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER---------QAPLAVEAFARAGLIA 235 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc---------hHHHHHHHHHHCCCCc
Confidence 1 00 01 1357778889999999999876431 2346778888888865
Q ss_pred EEEe
Q 008748 286 VSKK 289 (555)
Q Consensus 286 v~~~ 289 (555)
....
T Consensus 236 ~~~~ 239 (251)
T TIGR03704 236 RVAS 239 (251)
T ss_pred eeeE
Confidence 5433
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2e-07 Score=96.07 Aligned_cols=105 Identities=17% Similarity=0.110 Sum_probs=74.4
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHH-----cCCCeEEEEeCCCCC-CCCCCCccEEE
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE-----RGIPSTLGVLGTKRL-PYPSRSFELAH 224 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~-----rg~~v~~~~~d~~~L-p~~d~sFDlVv 224 (555)
++++||+||||.|.++..++++ +|+++|+++..+..+...+..- ...++.+..+|.... ....++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4579999999999999998764 5788889888776665443321 134678888886442 33457899999
Q ss_pred ecccccccccc----hHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 225 CSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 225 ~s~~~l~~~~d----~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
+.. .-++... ...+++.+.+.|+|||.+++.....
T Consensus 156 ~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~ 194 (283)
T PRK00811 156 VDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSP 194 (283)
T ss_pred ECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 743 2333221 1557899999999999999865443
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3e-08 Score=97.13 Aligned_cols=133 Identities=17% Similarity=0.215 Sum_probs=97.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
...++|||||.|.+...|... +++-+|.+..|+..++ -+...+......+.|-+.|+|.+++||+|+++. .+||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~--~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSl-slHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCR--DAQDPSIETSYFVGDEEFLDFKENSVDLIISSL-SLHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhh--ccCCCceEEEEEecchhcccccccchhhhhhhh-hhhh
Confidence 357999999999999999875 4566777766653332 222234556788999999999999999999887 6999
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhh---------------------HHHHHHHHHHHHhcCcEEEEEeec
Q 008748 233 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN---------------------RRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~---------------------~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
+.+....+..+...|||+|.|+-+.-... .+.+. ...-+.+-.++.++||.......+
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~Fiasmlggd-TLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDtD 228 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGD-TLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDTD 228 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccc-cHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceeccc
Confidence 99999999999999999999996543210 01111 112236778899999987765444
Q ss_pred e
Q 008748 292 T 292 (555)
Q Consensus 292 ~ 292 (555)
.
T Consensus 229 E 229 (325)
T KOG2940|consen 229 E 229 (325)
T ss_pred c
Confidence 3
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.7e-07 Score=96.18 Aligned_cols=118 Identities=14% Similarity=0.165 Sum_probs=80.9
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecccc-
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR- 229 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~- 229 (555)
.+|||+|||+|.++..++.. .++++|+++.++..++.+. ...+. ++.+..+|... ++++++||+|+|+--.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~-~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINI-ERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 58999999999999998853 6889999998887776443 33343 47888888643 2334689999985210
Q ss_pred -----------ccccc------------chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 230 -----------IDWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 230 -----------l~~~~------------d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
+++.+ ....++.++.++|+|||.+++..... ..++.+++.+.+|.-.
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~----------~~~~~~~~~~~~~~~~ 282 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS----------RVHLEEAYPDVPFTWL 282 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC----------HHHHHHHHhhCCCEEE
Confidence 01111 11457899999999999999865431 2346666777776443
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.7e-08 Score=97.63 Aligned_cols=139 Identities=15% Similarity=0.217 Sum_probs=82.8
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
...++||.|||.|..+..|+-. .|..+|..+.-+..+..........-..+....++++..+.++||+|++.-|+.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 4579999999999999987654 3444444444443333221112222356777788888666689999999997554
Q ss_pred ccc-chHHHHHHHHhhcCCCcEEEEEcC---CCC-CCChhh---HHHHHHHHHHHHhcCcEEEEEeeceE
Q 008748 232 WLQ-RDGILLLELDRLLRPGGYFVYSSP---EAY-AHDPEN---RRIWNAMYDLLKSMCWKIVSKKDQTV 293 (555)
Q Consensus 232 ~~~-d~~~~L~el~RvLkPGG~lvis~P---~~~-~~~~e~---~~~~~~l~~l~~~~gw~vv~~~~~~~ 293 (555)
..+ +.-.+|+.+...|+|+|.+++-.. ... ..+.++ .+.-+.+.++++++|++++..+.+..
T Consensus 135 LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~ 204 (218)
T PF05891_consen 135 LTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKG 204 (218)
T ss_dssp S-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT
T ss_pred CCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccC
Confidence 442 235699999999999999998431 110 111211 23446788999999999998887754
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.8e-07 Score=93.23 Aligned_cols=112 Identities=16% Similarity=0.218 Sum_probs=81.8
Q ss_pred CCCEEEEECCCCcHHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 234 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~ 234 (555)
....|.|+|||.+.++..-. ..|..+|+.+. +-.+..+|+.++|.+|++.|++++..+ -...
T Consensus 180 ~~~vIaD~GCGEakiA~~~~-~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CLS--LMgt 241 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIASSER-HKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCLS--LMGT 241 (325)
T ss_pred CceEEEecccchhhhhhccc-cceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeHh--hhcc
Confidence 34689999999998876221 25777766432 334667899999999999999986543 2357
Q ss_pred chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 235 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 235 d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
+...++.|++|+|++||.++|..-... .. .-..+.+.+..+||.+.....
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv~SR--f~----dv~~f~r~l~~lGF~~~~~d~ 291 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAEVKSR--FS----DVKGFVRALTKLGFDVKHKDV 291 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEehhhh--cc----cHHHHHHHHHHcCCeeeehhh
Confidence 788899999999999999999654321 11 123577889999998876543
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.4e-07 Score=98.76 Aligned_cols=125 Identities=21% Similarity=0.301 Sum_probs=83.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--CCCCCccEEEe----
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHC---- 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--~~d~sFDlVv~---- 225 (555)
+.+|||+|||+|..+..+++. .|+++|+++.++..++. .+...+..+.+..+|+..++ +..++||.|++
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~-n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 323 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRE-NLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPC 323 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCC
Confidence 468999999999999888753 68889999888766653 34445666788888887654 34578999994
Q ss_pred ccc-c------cccccc----------hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhc-CcEEE
Q 008748 226 SRC-R------IDWLQR----------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWKIV 286 (555)
Q Consensus 226 s~~-~------l~~~~d----------~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~-gw~vv 286 (555)
+.. . +.|... ...++.++.++|||||++++++-.... .+.. ..+..++++. +|+++
T Consensus 324 s~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~--~Ene---~~v~~~l~~~~~~~~~ 397 (427)
T PRK10901 324 SATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP--EENE---QQIKAFLARHPDAELL 397 (427)
T ss_pred CcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh--hhCH---HHHHHHHHhCCCCEEe
Confidence 321 1 112111 135899999999999999998854321 1221 2445555544 45544
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.8e-07 Score=89.91 Aligned_cols=121 Identities=17% Similarity=0.255 Sum_probs=85.3
Q ss_pred EEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC-CC--CCCCCccEEEeccccc
Q 008748 158 NVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LP--YPSRSFELAHCSRCRI 230 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~-Lp--~~d~sFDlVv~s~~~l 230 (555)
.+||||||.|.+...+|. ..++|+|+...-+..+..+.......++.+..+|+.. +. ++++++|.|+..+ .-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F-PD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF-PD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC-CC
Confidence 799999999999999986 3789999999888777755555555678899888766 32 5668999999766 35
Q ss_pred ccccch--------HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhc--CcEEEE
Q 008748 231 DWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM--CWKIVS 287 (555)
Q Consensus 231 ~~~~d~--------~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~--gw~vv~ 287 (555)
.|.... ..++.++.++|+|||.|.+.+-. ...+..+.+.++.. +|+.+.
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~--------~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV--------EEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES---------HHHHHHHHHHHHHHSTTEEEE-
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC--------HHHHHHHHHHHHhcCcCeEEcc
Confidence 554322 45999999999999999996532 23456666777663 777664
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.6e-07 Score=98.80 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=84.9
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCC----CCCCCccEEEe
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP----YPSRSFELAHC 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp----~~d~sFDlVv~ 225 (555)
+.+|||+|||+|..+..+++. .|+++|+++..+...+.+. ...|. ++.+..+|+..++ +..++||.|++
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~-~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 331 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENA-QRLGLKSIKILAADSRNLLELKPQWRGYFDRILL 331 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHH-HHcCCCeEEEEeCChhhcccccccccccCCEEEE
Confidence 468999999999999888752 5889999988886666444 33444 5788888887765 44578999995
Q ss_pred ----cc-cccccccc----------------hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhc-Cc
Q 008748 226 ----SR-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CW 283 (555)
Q Consensus 226 ----s~-~~l~~~~d----------------~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~-gw 283 (555)
+. .++...++ ...+|.++.++|||||+++.++-.... .+ .-..+..++++. +|
T Consensus 332 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~--~E---ne~~v~~~l~~~~~~ 406 (434)
T PRK14901 332 DAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP--AE---NEAQIEQFLARHPDW 406 (434)
T ss_pred eCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh--hh---HHHHHHHHHHhCCCc
Confidence 21 12222222 245899999999999999988755321 11 123455666655 46
Q ss_pred EEE
Q 008748 284 KIV 286 (555)
Q Consensus 284 ~vv 286 (555)
++.
T Consensus 407 ~~~ 409 (434)
T PRK14901 407 KLE 409 (434)
T ss_pred Eec
Confidence 543
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.7e-07 Score=90.99 Aligned_cols=102 Identities=16% Similarity=0.039 Sum_probs=75.3
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHH------------HHHcCCCeEEEEeCCCCCCCC---CC
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQF------------ALERGIPSTLGVLGTKRLPYP---SR 218 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~------------A~~rg~~v~~~~~d~~~Lp~~---d~ 218 (555)
..+||+.|||.|.-+.+|+++ .|+|+|+|+..+.....+. ...++..+.+.++|+..++.. .+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~ 123 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLP 123 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccC
Confidence 358999999999999999975 7888888887776543211 112356789999998888642 26
Q ss_pred CccEEEecccccccccch-HHHHHHHHhhcCCCcEEEEEc
Q 008748 219 SFELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 219 sFDlVv~s~~~l~~~~d~-~~~L~el~RvLkPGG~lvis~ 257 (555)
.||+|+-..+..+..++. .++.+.+.++|+|||.+++..
T Consensus 124 ~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 124 VFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred CcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 799988655433333333 558999999999999988754
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.9e-07 Score=94.75 Aligned_cols=94 Identities=11% Similarity=0.022 Sum_probs=68.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcC-CCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
..+|||||||+|.++..+++. .|+++|+++.++..++.+. .+.+ .++.+..+|....+...++||+|++...
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l-~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g- 158 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV-RRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVG- 158 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHH-HHcCCCcEEEEeCChhhcccccCCccEEEECCc-
Confidence 358999999999999998852 3888999988876665433 3333 3577888887665555568999997653
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
++. ....+.+.|+|||.+++..
T Consensus 159 ~~~------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 159 VDE------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hHH------hHHHHHHhcCCCCEEEEEe
Confidence 322 3445778999999998854
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.4e-07 Score=97.44 Aligned_cols=105 Identities=20% Similarity=0.397 Sum_probs=70.9
Q ss_pred CCCEEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHc----------CCCeEEEEeCCCC------CCC
Q 008748 155 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER----------GIPSTLGVLGTKR------LPY 215 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~r----------g~~v~~~~~d~~~------Lp~ 215 (555)
...+|||+|||-|.-..-... ..++|+|++...+.++..+...-+ ...+.+..+|... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 457999999998875544443 268899999998888776652211 1245677777432 222
Q ss_pred CCCCccEEEecccccccccch----HHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 216 PSRSFELAHCSRCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 216 ~d~sFDlVv~s~~~l~~~~d~----~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
....||+|-|.+ ++||.-.. ..+|..+...|+|||+|+.++|..
T Consensus 142 ~~~~FDvVScQF-alHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQF-ALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES--GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHH-HHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 335899999988 58887322 448999999999999999999874
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.4e-07 Score=97.05 Aligned_cols=103 Identities=18% Similarity=0.249 Sum_probs=74.0
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCCCCCCCccEEEe----
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHC---- 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp~~d~sFDlVv~---- 225 (555)
+.+|||+|||+|..+..+++ ..|+++|+++.++..++.+. .+.+. ++.+..+|+..++ ++++||+|++
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~-~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHA-SALGITIIETIEGDARSFS-PEEQPDAILLDAPC 328 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHH-HHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCC
Confidence 36899999999998877764 26889999998887666443 44454 4688888887765 4578999994
Q ss_pred cccc-c------ccccc----------hHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 226 SRCR-I------DWLQR----------DGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 226 s~~~-l------~~~~d----------~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
+... + .|..+ ...+|.++.++|||||++++++-..
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 2211 1 11111 1348999999999999999988654
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.1e-07 Score=92.05 Aligned_cols=103 Identities=14% Similarity=0.169 Sum_probs=70.2
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCC-CCCCCCccEEEeccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRL-PYPSRSFELAHCSRC 228 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~L-p~~d~sFDlVv~s~~ 228 (555)
.+++|||||||.|.++..++.. .++++|+++..+..+...+.... ..++.+.++|.... .-..++||+|++...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~ 145 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF 145 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC
Confidence 3568999999999999988753 67888888877765554333221 24678888886432 222367999996421
Q ss_pred cccccc---chHHHHHHHHhhcCCCcEEEEEc
Q 008748 229 RIDWLQ---RDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 229 ~l~~~~---d~~~~L~el~RvLkPGG~lvis~ 257 (555)
.-...+ ....+++++.++|+|||.+++..
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 011111 12579999999999999999853
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.5e-07 Score=97.95 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=72.7
Q ss_pred CCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEE--EEeCCCCCCC--CCCCccEEEe--
Q 008748 156 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTL--GVLGTKRLPY--PSRSFELAHC-- 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~v~~--~~~d~~~Lp~--~d~sFDlVv~-- 225 (555)
+.+|||+|||+|..+..+++ ..|+++|+++..+.....+. ...+..+.+ ..+|....++ +.++||.|++
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~-~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENL-KRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHH-HHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 46899999999999988875 36889999888876665443 344555444 4455544443 4678999994
Q ss_pred --cc-cccccccc----------------hHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 226 --SR-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 226 --s~-~~l~~~~d----------------~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
+. .+++..++ ...+|.++.++|||||.+++++-..
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 22 12322222 2458999999999999999988664
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.2e-07 Score=94.06 Aligned_cols=104 Identities=19% Similarity=0.362 Sum_probs=75.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHH--c----CCCeEEEEeCC------CCCCCCCCCc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE--R----GIPSTLGVLGT------KRLPYPSRSF 220 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~--r----g~~v~~~~~d~------~~Lp~~d~sF 220 (555)
+..+||+|||-|.-+...-.+ .++++||+...+.+++.+.-.- + ...+.|..+|. ..+++.+.+|
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~f 197 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRF 197 (389)
T ss_pred ccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCc
Confidence 357999999999766555443 6788888887776665443211 1 12467888884 2355666679
Q ss_pred cEEEeccccccccc----chHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 221 ELAHCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 221 DlVv~s~~~l~~~~----d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
|+|-|.++ +||.= ....+|+++.+.|||||+|+-+.|..
T Consensus 198 DivScQF~-~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 198 DIVSCQFA-FHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred ceeeeeee-EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 99999884 88762 22448999999999999999999985
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.8e-07 Score=90.01 Aligned_cols=111 Identities=15% Similarity=0.110 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEE
Q 008748 133 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGV 207 (555)
Q Consensus 133 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~ 207 (555)
......+.+.+.. .+..+|||||||+|++++.|+.. .|+++|..+.-...++.+++.....++.+.+
T Consensus 58 P~~~a~~l~~L~l--------~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~ 129 (209)
T PF01135_consen 58 PSMVARMLEALDL--------KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV 129 (209)
T ss_dssp HHHHHHHHHHTTC---------TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred HHHHHHHHHHHhc--------CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence 3444455555553 23469999999999999988852 4778999887666666555544444788999
Q ss_pred eCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 208 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 208 ~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
+|...-.-....||.|++..+ ..- .-..+.+.|++||++++-..
T Consensus 130 gdg~~g~~~~apfD~I~v~~a-~~~------ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 130 GDGSEGWPEEAPFDRIIVTAA-VPE------IPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp S-GGGTTGGG-SEEEEEESSB-BSS--------HHHHHTEEEEEEEEEEES
T ss_pred cchhhccccCCCcCEEEEeec-cch------HHHHHHHhcCCCcEEEEEEc
Confidence 886443223467999998764 332 23457778999999998543
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-06 Score=88.26 Aligned_cols=105 Identities=15% Similarity=0.117 Sum_probs=70.2
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHc----CCCeEEEEeCCCC-CCCCCCCccEEEe
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKR-LPYPSRSFELAHC 225 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~r----g~~v~~~~~d~~~-Lp~~d~sFDlVv~ 225 (555)
++++||+||||+|.++..++.. .++++|+++..+..+...+.... ..++.+...|... +....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3569999999999999888753 57888888877655553332211 2346677766533 2222478999997
Q ss_pred cccccccccc----hHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 226 SRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 226 s~~~l~~~~d----~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
.. ....... ...+++.+.++|+|||.+++.....
T Consensus 152 D~-~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~ 189 (270)
T TIGR00417 152 DS-TDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESP 189 (270)
T ss_pred eC-CCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence 54 2222111 2468899999999999999875543
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.7e-06 Score=90.25 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=71.6
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHH----cCCCeEEEEeCCCCC-C-CCCCCccEEE
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKRL-P-YPSRSFELAH 224 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~----rg~~v~~~~~d~~~L-p-~~d~sFDlVv 224 (555)
++++||+||||.|.++..+++. +|+.+|+++..+..+...+... ...++.++.+|.... . .++++||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 4579999999999999999874 4667788776665444333221 134688888885332 1 2356899999
Q ss_pred ecccccccccc----hHHHHHHHHhhcCCCcEEEEEcCCCC
Q 008748 225 CSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAY 261 (555)
Q Consensus 225 ~s~~~l~~~~d----~~~~L~el~RvLkPGG~lvis~P~~~ 261 (555)
+-. .-++.+. ...+++.+.++|+|||.+++.....+
T Consensus 171 ~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~ 210 (308)
T PLN02366 171 VDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMW 210 (308)
T ss_pred EcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcc
Confidence 743 2222221 14589999999999999987554443
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.9e-06 Score=80.71 Aligned_cols=119 Identities=16% Similarity=0.051 Sum_probs=84.8
Q ss_pred CCCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC-CCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~-Lp~~d~sFDlVv~s~~~ 229 (555)
+..+++|||||+|+.+..++. .+++++|-++..+.....+.++-...++.++.+++-. |+-. .+||.|+....
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~-~~~daiFIGGg- 111 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL-PSPDAIFIGGG- 111 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC-CCCCEEEECCC-
Confidence 346899999999999999882 3789999888777655544444334567888888643 3322 27999997653
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCc-EEEE
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW-KIVS 287 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw-~vv~ 287 (555)
.+.+.+|+.+...|||||++++..-. .+......+.+++.|+ +++.
T Consensus 112 ----~~i~~ile~~~~~l~~ggrlV~nait--------lE~~~~a~~~~~~~g~~ei~~ 158 (187)
T COG2242 112 ----GNIEEILEAAWERLKPGGRLVANAIT--------LETLAKALEALEQLGGREIVQ 158 (187)
T ss_pred ----CCHHHHHHHHHHHcCcCCeEEEEeec--------HHHHHHHHHHHHHcCCceEEE
Confidence 34577999999999999999984422 2334456667788898 5443
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.1e-06 Score=90.71 Aligned_cols=158 Identities=14% Similarity=0.070 Sum_probs=95.6
Q ss_pred eeCCCCCCCCccH-HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHH
Q 008748 120 NFPGGGTHFHDGA-DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQ 194 (555)
Q Consensus 120 ~F~~~g~~f~~~a-~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~ 194 (555)
-|.+|.-++...- ..|.+.+....-.. ..++++||+||||+|..++.+++. .|+++|+++.++..+...
T Consensus 120 L~LDG~~Q~se~DE~iYHE~Lvhp~m~~------h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~ 193 (374)
T PRK01581 120 LYLDKQLQFSSVDEQIYHEALVHPIMSK------VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNV 193 (374)
T ss_pred EEECCeeccccccHHHHHHHHHHHHHHh------CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhc
Confidence 3555554444433 34555555422111 134579999999999988888863 577788877666544420
Q ss_pred --HH--HH---cCCCeEEEEeCCCC-CCCCCCCccEEEecccccccc-----cchHHHHHHHHhhcCCCcEEEEEcCCCC
Q 008748 195 --FA--LE---RGIPSTLGVLGTKR-LPYPSRSFELAHCSRCRIDWL-----QRDGILLLELDRLLRPGGYFVYSSPEAY 261 (555)
Q Consensus 195 --~A--~~---rg~~v~~~~~d~~~-Lp~~d~sFDlVv~s~~~l~~~-----~d~~~~L~el~RvLkPGG~lvis~P~~~ 261 (555)
+. .+ ...++.+.++|+.. +.-..+.||+|++.. .-... -....+++.+.+.|+|||.+++.....+
T Consensus 194 ~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~ 272 (374)
T PRK01581 194 PELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA 272 (374)
T ss_pred cccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh
Confidence 00 00 13568888888654 334456899999753 11110 0114589999999999999988654332
Q ss_pred CCChhhHHHHHHHHHHHHhcCcEEEEE
Q 008748 262 AHDPENRRIWNAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 262 ~~~~e~~~~~~~l~~l~~~~gw~vv~~ 288 (555)
. ....+..+.+.+++.++.+...
T Consensus 273 ~----~~~~~~~i~~tL~~af~~v~~y 295 (374)
T PRK01581 273 D----APLVYWSIGNTIEHAGLTVKSY 295 (374)
T ss_pred h----hHHHHHHHHHHHHHhCCceEEE
Confidence 1 1233344677788888866643
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=8e-07 Score=90.66 Aligned_cols=124 Identities=12% Similarity=0.087 Sum_probs=81.9
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
.+|||+|||+|.++..++.+ .|+++|+++.++ +.++++..++.+..+|+..+.. +++||+|+++....+.
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al-----~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFA-----RIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKI 139 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-----HHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCcccc
Confidence 58999999999998887652 577787776555 4444444567888899877653 4689999986532221
Q ss_pred ccc-------------------hHHHHHHHHhhcCCCcEEEEEc--CCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 233 LQR-------------------DGILLLELDRLLRPGGYFVYSS--PEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 233 ~~d-------------------~~~~L~el~RvLkPGG~lvis~--P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
... ...++..+.++|+|+|.+.+.- -+.| +..- .=++..++++..||....-.+
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y-~~sl---~~~~y~~~l~~~g~~~~~~~~ 214 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYY-DGTM---KSNKYLKWSKQTGLVTYAGCG 214 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccc-cccC---CHHHHHHHHHhcCcEecCCCC
Confidence 110 1356788889999999877642 1112 1111 123667889999997765443
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.6e-07 Score=90.04 Aligned_cols=105 Identities=16% Similarity=0.157 Sum_probs=74.0
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEe----c
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHC----S 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~----s 226 (555)
+.+|||+|||+|..+..+++ ..|+++|+++..+.....++.+....++.+...|...++...+.||.|++ +
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcs 151 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCS 151 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCC
Confidence 46899999999999988775 26889999988886666444433223567888887766655567999985 2
Q ss_pred cc-ccc--------ccc--------chHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 227 RC-RID--------WLQ--------RDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 227 ~~-~l~--------~~~--------d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
.. ++. +.+ ....+|.++.++|||||+++.++-..
T Consensus 152 g~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 152 GEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 11 111 111 11348999999999999999987553
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.6e-06 Score=94.82 Aligned_cols=124 Identities=15% Similarity=0.197 Sum_probs=81.1
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCC--CCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp--~~d~sFDlVv~s~ 227 (555)
..+|||+|||+|..+..+++. .|+++|+++..+..++.+. .+.+. ++.+..+|+..++ ++ ++||+|++.-
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~-~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~ 328 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENA-KRLGLTNIETKALDARKVHEKFA-EKFDKILVDA 328 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCeEEEEeCCcccccchhc-ccCCEEEEcC
Confidence 368999999999999888752 6889999988876665433 34443 4788888876653 33 6899999632
Q ss_pred c-----ccc------cccc----------hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhc-CcEE
Q 008748 228 C-----RID------WLQR----------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWKI 285 (555)
Q Consensus 228 ~-----~l~------~~~d----------~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~-gw~v 285 (555)
. .+. |... ...++.++.++|||||.+++++-.... .+ .-..+..++++. .|++
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~--~E---ne~vv~~~l~~~~~~~~ 403 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK--EE---NEEVIEAFLEEHPEFEL 403 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh--hh---hHHHHHHHHHhCCCcEE
Confidence 0 111 1101 134799999999999999987755321 11 112445556554 3655
Q ss_pred E
Q 008748 286 V 286 (555)
Q Consensus 286 v 286 (555)
+
T Consensus 404 ~ 404 (444)
T PRK14902 404 V 404 (444)
T ss_pred e
Confidence 4
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.8e-07 Score=97.36 Aligned_cols=104 Identities=14% Similarity=0.170 Sum_probs=74.8
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCC-CCCCCccEEEe---
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAHC--- 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp-~~d~sFDlVv~--- 225 (555)
+.+|||+|||+|..+.+++. ..|+++|+++..+.....+. .+.+. .+.+.+.|...++ +.+++||.|++
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~-~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaP 316 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHA-KRLKLSSIEIKIADAERLTEYVQDTFDRILVDAP 316 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHH-HHcCCCeEEEEECchhhhhhhhhccCCEEEECCC
Confidence 46899999999998887775 36889999988886666443 34454 4678888887776 45678999996
Q ss_pred -ccc-cccccc----------------chHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 226 -SRC-RIDWLQ----------------RDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 226 -s~~-~l~~~~----------------d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
+.. .+...+ ...++|.++.+.|||||++++++-..
T Consensus 317 Csg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 317 CTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 221 111111 12447899999999999999988664
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.7e-07 Score=83.74 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=66.1
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
..+|||+|||+|.++..++++ .++++|+++.++...+.++.. ..++.+..+|+..+++++..||.|+++. ..+.
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~-Py~~- 89 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNL-PYNI- 89 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECC-Cccc-
Confidence 358999999999999999975 688898888776555433321 3468899999999888877899998653 2322
Q ss_pred cchHHHHHHHHhh--cCCCcEEEEE
Q 008748 234 QRDGILLLELDRL--LRPGGYFVYS 256 (555)
Q Consensus 234 ~d~~~~L~el~Rv--LkPGG~lvis 256 (555)
. ...+..+.+. +.++|.+++.
T Consensus 90 -~-~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 90 -S-TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred -H-HHHHHHHHhcCCCcceEEEEEE
Confidence 1 2334444332 4578888773
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.4e-06 Score=87.96 Aligned_cols=120 Identities=20% Similarity=0.266 Sum_probs=79.6
Q ss_pred EEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 158 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
+|||+|||+|.++..++.. .|+++|+++..+.-+..+ |...+. ++.++..|.. -+.. ++||+|+|+---+..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~N-a~~~~l~~~~~~~~dlf-~~~~-~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAREN-AERNGLVRVLVVQSDLF-EPLR-GKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHH-HHHcCCccEEEEeeecc-cccC-CceeEEEeCCCCCCC
Confidence 7999999999999999863 788999999888766644 444453 3344444321 1222 489999985321211
Q ss_pred c------------------------cchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcC-cEEEE
Q 008748 233 L------------------------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVS 287 (555)
Q Consensus 233 ~------------------------~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g-w~vv~ 287 (555)
. .-...++.++.+.|+|||.+++-.-.. .-+.+.+++.+.| |..+.
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~---------q~~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT---------QGEAVKALFEDTGFFEIVE 260 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC---------cHHHHHHHHHhcCCceEEE
Confidence 1 001347888999999999999855321 2346888999999 55444
Q ss_pred Ee
Q 008748 288 KK 289 (555)
Q Consensus 288 ~~ 289 (555)
..
T Consensus 261 ~~ 262 (280)
T COG2890 261 TL 262 (280)
T ss_pred EE
Confidence 33
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.2e-06 Score=95.57 Aligned_cols=125 Identities=15% Similarity=0.082 Sum_probs=83.9
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHH--HHH-H----cCCCeEEEEeCCCCC-CCCCCCccE
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQ--FAL-E----RGIPSTLGVLGTKRL-PYPSRSFEL 222 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~--~A~-~----rg~~v~~~~~d~~~L-p~~d~sFDl 222 (555)
++++|||||||+|..+..++++ +++.+|+++..+..++.+ +.. . ..+++++...|.... ...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 4578999999999999888753 577788877766544431 110 0 124678888886542 223468999
Q ss_pred EEecccccccccc-----hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcE
Q 008748 223 AHCSRCRIDWLQR-----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 284 (555)
Q Consensus 223 Vv~s~~~l~~~~d-----~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~ 284 (555)
|++.. ..+..+. ..++++.+.+.|+|||.+++.....+.. .+.+.++.+.+++.||.
T Consensus 377 Ii~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 377 IIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA----PKAFWSIEATLEAAGLA 438 (521)
T ss_pred EEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc----hHHHHHHHHHHHHcCCE
Confidence 99764 2322221 1358899999999999999876443221 23456778888889993
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.9e-06 Score=91.75 Aligned_cols=123 Identities=14% Similarity=0.093 Sum_probs=82.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC----CCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR----LPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~----Lp~~d~sFDlVv~s~~~ 229 (555)
..+|||+|||+|.++..|+.. .|+++|+++.++..+..+.......++.+..+|+.. +++.+++||+|++.-.
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPP- 376 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPP- 376 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcC-
Confidence 358999999999999999864 688999999988777644433322358899998643 3355678999996532
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeece
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQT 292 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~~ 292 (555)
+.. ....+..+.+ ++|++.++++..+. ..-+++..+ .+.||++...+..-
T Consensus 377 --r~g-~~~~~~~l~~-~~~~~ivyvSCnp~--------tlaRDl~~L-~~~gY~l~~i~~~D 426 (443)
T PRK13168 377 --RAG-AAEVMQALAK-LGPKRIVYVSCNPA--------TLARDAGVL-VEAGYRLKRAGMLD 426 (443)
T ss_pred --CcC-hHHHHHHHHh-cCCCeEEEEEeChH--------HhhccHHHH-hhCCcEEEEEEEec
Confidence 221 1345555555 69999999986331 112233333 45689888766544
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.3e-07 Score=102.25 Aligned_cols=126 Identities=15% Similarity=0.113 Sum_probs=86.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCC-CCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRL-PYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~L-p~~d~sFDlVv~s~~~ 229 (555)
+++|||+|||+|.++..++.. .|+++|+++..+..+..+...... .++.+..+|+.+. .-..++||+|++.--.
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~ 618 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT 618 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence 368999999999999999863 589999999988877766554432 2578888885432 1114689999984311
Q ss_pred c----------ccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 230 I----------DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 230 l----------~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
+ ....+...++..+.++|+|||.++++.-... .....+.+.+.|+.+...+.
T Consensus 619 f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~---------~~~~~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 619 FSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG---------FKMDEEGLAKLGLKAEEITA 680 (702)
T ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---------CChhHHHHHhCCCeEEEEec
Confidence 1 1112335578889999999999988654321 11125667778887765544
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.6e-06 Score=83.60 Aligned_cols=116 Identities=17% Similarity=0.186 Sum_probs=84.6
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
+.+|||.|.|+|.++.+|+. ..|+..|+-......|..++..-. +..+.+...|..+.-+++ .||+|+. .
T Consensus 95 g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~L-D-- 170 (256)
T COG2519 95 GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFL-D-- 170 (256)
T ss_pred CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEEE-c--
Confidence 46999999999999999994 368888887766655554443322 233777888887776665 8999982 2
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
+++|-.++..+..+|+|||.+++-.|.. +.-++....+++.||..+
T Consensus 171 ---mp~PW~~le~~~~~Lkpgg~~~~y~P~v--------eQv~kt~~~l~~~g~~~i 216 (256)
T COG2519 171 ---LPDPWNVLEHVSDALKPGGVVVVYSPTV--------EQVEKTVEALRERGFVDI 216 (256)
T ss_pred ---CCChHHHHHHHHHHhCCCcEEEEEcCCH--------HHHHHHHHHHHhcCccch
Confidence 4677889999999999999999988875 223344444566688544
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.8e-06 Score=83.24 Aligned_cols=96 Identities=15% Similarity=0.119 Sum_probs=66.7
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCC-CCCCCCCCccEEEecccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK-RLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~-~Lp~~d~sFDlVv~s~~~l~ 231 (555)
+..+|||||||+|+.++.|++. .|..++..+.-...+..++..-...++.+.++|.. .+| +...||.|++..+ ..
T Consensus 72 ~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-~~aPyD~I~Vtaa-a~ 149 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP-EEAPYDRIIVTAA-AP 149 (209)
T ss_pred CCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC-CCCCcCEEEEeec-cC
Confidence 3468999999999999999873 68888887765544443433322336888888853 344 3378999997664 33
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
.+ =..+.+-|++||++++-.-
T Consensus 150 ~v------P~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 150 EV------PEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CC------CHHHHHhcccCCEEEEEEc
Confidence 22 2445678999999998543
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.6e-06 Score=88.71 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=80.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC----CCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR----LPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~----Lp~~d~sFDlVv~s~~~ 229 (555)
..+|||+|||+|.++..|++. .|+++|+++.++..+..+.....-.++.+..+|+.. +++.+++||+|+..-.
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPP- 371 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPP- 371 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcC-
Confidence 358999999999999999863 689999999888777654443333468888888654 2344567999996432
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
...-...++..+.+ |+|++.++++..+ ..+..-...+.+.||++...+..
T Consensus 372 --r~G~~~~~l~~l~~-l~~~~ivyvsc~p---------~tlard~~~l~~~gy~~~~~~~~ 421 (431)
T TIGR00479 372 --RKGCAAEVLRTIIE-LKPERIVYVSCNP---------ATLARDLEFLCKEGYGITWVQPV 421 (431)
T ss_pred --CCCCCHHHHHHHHh-cCCCEEEEEcCCH---------HHHHHHHHHHHHCCeeEEEEEEe
Confidence 11112446666554 8999988886432 12222233455678877655543
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.6e-06 Score=86.00 Aligned_cols=121 Identities=17% Similarity=0.276 Sum_probs=76.5
Q ss_pred CCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC------CCccccCChhhhhHHHHHHHHHcC
Q 008748 127 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALERG 200 (555)
Q Consensus 127 ~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~------~V~~vdis~~dls~a~i~~A~~rg 200 (555)
.|.....-..+..-+++.... ....+||+||||.|.....|++. .+.+.|.++.++ +..+++.
T Consensus 49 rFfkdR~wL~~Efpel~~~~~------~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai-----~~vk~~~ 117 (264)
T KOG2361|consen 49 RFFKDRNWLLREFPELLPVDE------KSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI-----ELVKKSS 117 (264)
T ss_pred cccchhHHHHHhhHHhhCccc------cChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH-----HHHHhcc
Confidence 444444444455556655432 22337999999999888887753 467788877665 3333221
Q ss_pred ----CCeEEEEeCC--C--CCCCCCCCccEEEecccccccccc-hHHHHHHHHhhcCCCcEEEEEcC
Q 008748 201 ----IPSTLGVLGT--K--RLPYPSRSFELAHCSRCRIDWLQR-DGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 201 ----~~v~~~~~d~--~--~Lp~~d~sFDlVv~s~~~l~~~~d-~~~~L~el~RvLkPGG~lvis~P 258 (555)
..+...+.|+ . .-|...+++|.|++.+....-.++ ...++.++.++|||||.+++-+=
T Consensus 118 ~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 118 GYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred ccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 1233334442 2 235667899999998843332222 25589999999999999999653
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2e-06 Score=85.81 Aligned_cols=99 Identities=18% Similarity=0.280 Sum_probs=78.4
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCC---CCCCCCccEEEeccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL---PYPSRSFELAHCSRC 228 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~L---p~~d~sFDlVv~s~~ 228 (555)
..+||||||.|.+...+|++ .++|+++...-+..+. +.+.+.+. ++.+...|+..+ -+++++.|-|+..+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l-~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F- 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKAL-KKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF- 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHH-HHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC-
Confidence 47999999999999999974 7889999887665555 66677788 899998886443 24566999999777
Q ss_pred ccccccch--------HHHHHHHHhhcCCCcEEEEEc
Q 008748 229 RIDWLQRD--------GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 229 ~l~~~~d~--------~~~L~el~RvLkPGG~lvis~ 257 (555)
.-.|.... ..++..+.++|+|||.|.+.+
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 46665432 348999999999999999965
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.3e-05 Score=84.07 Aligned_cols=98 Identities=20% Similarity=0.336 Sum_probs=64.8
Q ss_pred ccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--Ce
Q 008748 130 DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PS 203 (555)
Q Consensus 130 ~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~--~v 203 (555)
+++-.|+..+.+++........+.+...++||||||+|.+...|+.+ .++++|+++..+..++.+.+...+. .+
T Consensus 89 P~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 89 PGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred CcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 35678888888887643221222334578999999999888777653 6889999999888887666554123 35
Q ss_pred EEEEe-CCCCC----CCCCCCccEEEecc
Q 008748 204 TLGVL-GTKRL----PYPSRSFELAHCSR 227 (555)
Q Consensus 204 ~~~~~-d~~~L----p~~d~sFDlVv~s~ 227 (555)
.+... +...+ ..+.+.||+|+|+-
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNP 197 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNP 197 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCC
Confidence 55432 32222 12456899999874
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.3e-06 Score=84.75 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=69.1
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCC-C-----CCCCCccE
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-----YPSRSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~L-p-----~~d~sFDl 222 (555)
+++|||+|||+|+.+..|+. ..++++|+++..+..+..++++ .+. .+.+..+|+... + .+.++||+
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~-~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKK-AGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 46899999999987776654 2689999998877666644443 343 478888886442 2 12468999
Q ss_pred EEecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 223 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 223 Vv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
|++-.. -+....++..+.++|+|||.+++..
T Consensus 148 VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 148 AFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 986431 1233568999999999999988743
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=80.58 Aligned_cols=119 Identities=19% Similarity=0.208 Sum_probs=74.9
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeE-EEEeCCCCC-----CCCCCCccEEEe
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKRL-----PYPSRSFELAHC 225 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~-~~~~d~~~L-----p~~d~sFDlVv~ 225 (555)
...+|||+|||+|.|+..+++. .|+++|++..++.... .....+. +...++..+ +..-..||++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l-----~~~~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKL-----RQDERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHH-----hcCCCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 3468999999999999999875 6889998887765422 2223322 233333322 212236787776
Q ss_pred cccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCC------------CChhh-HHHHHHHHHHHHhcCcEEEEE
Q 008748 226 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA------------HDPEN-RRIWNAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 226 s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~------------~~~e~-~~~~~~l~~l~~~~gw~vv~~ 288 (555)
+.. ..+..+.++|+| |.+++-..+.+. .+... .+...++...+.+.||.+...
T Consensus 150 S~~---------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (228)
T TIGR00478 150 SLI---------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKI 215 (228)
T ss_pred ehH---------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeE
Confidence 652 258899999999 877765433221 12222 234457777788889987643
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.23 E-value=6e-06 Score=97.95 Aligned_cols=123 Identities=14% Similarity=0.138 Sum_probs=83.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHc----------------CCCeEEEEeCCCCCCC
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----------------GIPSTLGVLGTKRLPY 215 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~r----------------g~~v~~~~~d~~~Lp~ 215 (555)
..+|||+|||+|.++..++.. .++++|+++.++..+..+..... ..++.+..+|.....-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 358999999999999998853 69999999999887776654421 1247888888654321
Q ss_pred C-CCCccEEEeccccc-------------ccc--------------------cch----HHHHHHHHhhcCCCcEEEEEc
Q 008748 216 P-SRSFELAHCSRCRI-------------DWL--------------------QRD----GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 216 ~-d~sFDlVv~s~~~l-------------~~~--------------------~d~----~~~L~el~RvLkPGG~lvis~ 257 (555)
. ...||+|+|+---+ .+- .+. ..++.+..++|+|||.+++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 13699999842111 010 111 447888889999999999854
Q ss_pred CCCCCCChhhHHHHHHHH-HHHHhcCcEEEE
Q 008748 258 PEAYAHDPENRRIWNAMY-DLLKSMCWKIVS 287 (555)
Q Consensus 258 P~~~~~~~e~~~~~~~l~-~l~~~~gw~vv~ 287 (555)
-. ..-+.+. +++++.||..+.
T Consensus 279 G~---------~q~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 279 GG---------RPGQAVCERLFERRGFRITK 300 (1082)
T ss_pred Cc---------cHHHHHHHHHHHHCCCCeeE
Confidence 32 1223566 588889987653
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.2e-06 Score=84.53 Aligned_cols=90 Identities=11% Similarity=0.131 Sum_probs=61.2
Q ss_pred CEEEEECCCCcHHHHHHhcC-------CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH-------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~-------~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
.+|||+|||+|.++..++.. .|+++|+++.++ +.|++....+.+...|+...++ +++||+|+++--.
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al-----~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY 124 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYY-----KLGKRIVPEATWINADALTTEF-DTLFDMAISNPPF 124 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHH-----HHHHhhccCCEEEEcchhcccc-cCCccEEEECCCC
Confidence 58999999999999887642 466776666554 4555444567888889876665 4689999986321
Q ss_pred cccc-----------cchHHHHHHHHhhcCCCcE
Q 008748 230 IDWL-----------QRDGILLLELDRLLRPGGY 252 (555)
Q Consensus 230 l~~~-----------~d~~~~L~el~RvLkPGG~ 252 (555)
.... .-...++..+.+++++|+.
T Consensus 125 ~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 125 GKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1000 0123478888887777775
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.2e-05 Score=82.21 Aligned_cols=133 Identities=17% Similarity=0.228 Sum_probs=93.7
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHc---------------------------------
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER--------------------------------- 199 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~r--------------------------------- 199 (555)
+..+||=-|||.|.++..++.+ .+.+.++|..|+-.. ++....
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s--~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLAS--NFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHH--HHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 3468999999999999999976 566777777664222 121110
Q ss_pred ---------CCCeEEEEeCCCCCCCCC---CCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChh-
Q 008748 200 ---------GIPSTLGVLGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE- 266 (555)
Q Consensus 200 ---------g~~v~~~~~d~~~Lp~~d---~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e- 266 (555)
..+.....+|+..+..++ ++||+|++.+ .+.-..+.-.++..+.++|||||++|=.+|--|+..+.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~ 212 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS 212 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC
Confidence 001223344444443333 6899999877 46655666779999999999999999888887765443
Q ss_pred ------hHHHHHHHHHHHHhcCcEEEEEee
Q 008748 267 ------NRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 267 ------~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
..-.++++..++++.||+++..+.
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 222689999999999999987665
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.3e-05 Score=83.73 Aligned_cols=119 Identities=14% Similarity=0.142 Sum_probs=78.2
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCCC-CCCCccEEEeccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPY-PSRSFELAHCSRCRIDW 232 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp~-~d~sFDlVv~s~~~l~~ 232 (555)
.+|||+|||+|.++..++.. .|+++|+++.++..+..+. ...+. ++.+..+|+..+.. ..+.||+|++.-. .
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~-~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP---r 250 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSA-AELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP---R 250 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHH-HHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC---C
Confidence 68999999999999999974 6899999998887766443 44444 58899999766532 3357999996531 1
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 233 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
.. ....+.++...++|++.++++..+.- . -+++..+ .||++...+..
T Consensus 251 ~G-~~~~~~~~l~~~~~~~ivyvsc~p~t--~------~rd~~~l---~~y~~~~~~~~ 297 (315)
T PRK03522 251 RG-IGKELCDYLSQMAPRFILYSSCNAQT--M------AKDLAHL---PGYRIERVQLF 297 (315)
T ss_pred CC-ccHHHHHHHHHcCCCeEEEEECCccc--c------hhHHhhc---cCcEEEEEEEe
Confidence 11 11223344445788888888764421 1 1233333 48888766554
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.1e-06 Score=83.77 Aligned_cols=94 Identities=19% Similarity=0.200 Sum_probs=67.6
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
.+.++|||||+|.|.++..++++ +++..|+ +..++.+.+ ..++.+..+|+. -++|. +|+++..+.
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl------p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~v- 167 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL------PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHV- 167 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-------HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESS-
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc------Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehh-
Confidence 44578999999999999999864 4455554 223344444 678999999976 56664 999999985
Q ss_pred cccccch--HHHHHHHHhhcCCC--cEEEEEcC
Q 008748 230 IDWLQRD--GILLLELDRLLRPG--GYFVYSSP 258 (555)
Q Consensus 230 l~~~~d~--~~~L~el~RvLkPG--G~lvis~P 258 (555)
+|...+. ..+|+++++.|+|| |.++|..+
T Consensus 168 Lh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 168 LHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 5544433 55899999999999 99999764
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.8e-06 Score=82.13 Aligned_cols=103 Identities=22% Similarity=0.423 Sum_probs=57.1
Q ss_pred CCCEEEEECCCCc----HHHHHHhc--C-------CCccccCChhhhhHHHHHH------------HHHc------C---
Q 008748 155 NIRNVLDVGCGVA----SFGAYLLS--H-------DIIAMSLAPNDVHENQIQF------------ALER------G--- 200 (555)
Q Consensus 155 ~~~~VLDIGCGtG----~~a~~La~--~-------~V~~vdis~~dls~a~i~~------------A~~r------g--- 200 (555)
+.-+|+.+||++| +++..|.+ . .|+|.|+++..+..|..-. ..++ +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4568999999999 34444444 1 4556666655554432100 0000 1
Q ss_pred -------CCeEEEEeCCCCCCCCCCCccEEEecccccccccch--HHHHHHHHhhcCCCcEEEEEcC
Q 008748 201 -------IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 201 -------~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~--~~~L~el~RvLkPGG~lvis~P 258 (555)
..+.|...|+.+.+.+.+.||+|+|.+. +-|.... ..++..+.+.|+|||+|++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNV-lIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNV-LIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SS-GGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCE-EEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 1357788887663344578999999995 4455443 5599999999999999999653
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.4e-05 Score=86.21 Aligned_cols=101 Identities=13% Similarity=0.129 Sum_probs=70.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCC----CCCCCccEEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLP----YPSRSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp----~~d~sFDlVv~s 226 (555)
+.+|||+|||+|.++..++.. .|+++|+++..+..+..+++...- ..+.+..+|+..+- -..++||+|++.
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 368999999999998775532 689999999988777655544332 25788888865431 124689999976
Q ss_pred cccccccc----------chHHHHHHHHhhcCCCcEEEEEcC
Q 008748 227 RCRIDWLQ----------RDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 227 ~~~l~~~~----------d~~~~L~el~RvLkPGG~lvis~P 258 (555)
--. +.. +...++..+.++|+|||.+++.+-
T Consensus 301 PP~--f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 301 PPK--FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCC--CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 321 211 123456678899999999998653
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2e-05 Score=82.47 Aligned_cols=123 Identities=18% Similarity=0.213 Sum_probs=86.6
Q ss_pred CCEEEEECCCCcHHHHHHh--cCCCccccCChhhhhHHHHHHHHHcCCCeEEEEe-CCCCCCCCCCCccEEEecc----c
Q 008748 156 IRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVL-GTKRLPYPSRSFELAHCSR----C 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La--~~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~-d~~~Lp~~d~sFDlVv~s~----~ 228 (555)
+..|||==||||+++.... ...++|.|++..++..+..++-.-+-....+... |+..+|+++++||.|++-- .
T Consensus 198 G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrs 277 (347)
T COG1041 198 GELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRS 277 (347)
T ss_pred CCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCCcc
Confidence 4589999999999886643 5678888888888877666554333234444444 9999999988999999821 0
Q ss_pred -cccc--ccc-hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 229 -RIDW--LQR-DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 229 -~l~~--~~d-~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
...- .+. ...+|..+.++|++||++++..|.. ....+.+.+|+++..-.+
T Consensus 278 t~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~-------------~~~~~~~~~f~v~~~~~~ 331 (347)
T COG1041 278 TKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRD-------------PRHELEELGFKVLGRFTM 331 (347)
T ss_pred cccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCc-------------chhhHhhcCceEEEEEEE
Confidence 0110 011 2568999999999999999998832 123467789998865554
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.9e-05 Score=77.41 Aligned_cols=123 Identities=11% Similarity=-0.006 Sum_probs=76.6
Q ss_pred CCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHH-hc--CCCccccCChhhhhHHHHHHHHHcCCCe
Q 008748 127 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYL-LS--HDIIAMSLAPNDVHENQIQFALERGIPS 203 (555)
Q Consensus 127 ~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~L-a~--~~V~~vdis~~dls~a~i~~A~~rg~~v 203 (555)
.+.+..+...+.+.+.+... ....+|||+|||+|.++..+ +. ..|+++|+++..+..+..+.......++
T Consensus 32 ~~Rp~~d~v~e~l~~~l~~~-------~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v 104 (199)
T PRK10909 32 GLRPTTDRVRETLFNWLAPV-------IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNA 104 (199)
T ss_pred CcCcCCHHHHHHHHHHHhhh-------cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcE
Confidence 34566666666565555311 12358999999999999864 43 2688999988776655544333222357
Q ss_pred EEEEeCCCC-CCCCCCCccEEEecccccccccc-hHHHHHHHHh--hcCCCcEEEEEcCC
Q 008748 204 TLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQR-DGILLLELDR--LLRPGGYFVYSSPE 259 (555)
Q Consensus 204 ~~~~~d~~~-Lp~~d~sFDlVv~s~~~l~~~~d-~~~~L~el~R--vLkPGG~lvis~P~ 259 (555)
.+..+|+.. ++...++||+|++.-- |... ...++..+.. +|+|+|.+++..+.
T Consensus 105 ~~~~~D~~~~l~~~~~~fDlV~~DPP---y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 105 RVVNTNALSFLAQPGTPHNVVFVDPP---FRKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred EEEEchHHHHHhhcCCCceEEEECCC---CCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 888888643 3323457999996542 2222 2334555544 47999999987654
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2e-05 Score=68.03 Aligned_cols=99 Identities=29% Similarity=0.435 Sum_probs=68.4
Q ss_pred EEEECCCCcHHH--HHHhcC--CCccccCChhhhhHHHHHHHHHcCCC-eEEEEeCCCC--CCCCC-CCccEEEeccccc
Q 008748 159 VLDVGCGVASFG--AYLLSH--DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKR--LPYPS-RSFELAHCSRCRI 230 (555)
Q Consensus 159 VLDIGCGtG~~a--~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~-v~~~~~d~~~--Lp~~d-~sFDlVv~s~~~l 230 (555)
+||+|||+|... ..+... .++++|++..++......... .... +.+...+... +++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999843 333332 466778877766552222111 2222 5677777665 78876 489999 666555
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
++.. ....+.++.++|+|+|.+++.....
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 5555 6779999999999999999987654
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.1e-05 Score=83.26 Aligned_cols=101 Identities=16% Similarity=0.249 Sum_probs=65.6
Q ss_pred CEEEEECCCCc----HHHHHHhcC--------CCccccCChhhhhHHHHHH----H--------HHc----------C--
Q 008748 157 RNVLDVGCGVA----SFGAYLLSH--------DIIAMSLAPNDVHENQIQF----A--------LER----------G-- 200 (555)
Q Consensus 157 ~~VLDIGCGtG----~~a~~La~~--------~V~~vdis~~dls~a~i~~----A--------~~r----------g-- 200 (555)
-+|+..||.|| +++..|.+. .|+|+|++...+..|+.-. . .++ +
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 58999999999 344444431 4667777766665443210 0 000 0
Q ss_pred -------CCeEEEEeCCCCCCCC-CCCccEEEeccccccccc-chHHHHHHHHhhcCCCcEEEEEc
Q 008748 201 -------IPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDWLQ-RDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 201 -------~~v~~~~~d~~~Lp~~-d~sFDlVv~s~~~l~~~~-d~~~~L~el~RvLkPGG~lvis~ 257 (555)
..+.|...|+...+++ .+.||+|+|.+..+++.. ....++..+.+.|+|||+|++..
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 1246777776654443 578999999885444432 23669999999999999988854
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.5e-05 Score=79.12 Aligned_cols=133 Identities=20% Similarity=0.203 Sum_probs=80.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHc------------CCCeEEEEeCCCCCCCCC-CCc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER------------GIPSTLGVLGTKRLPYPS-RSF 220 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~r------------g~~v~~~~~d~~~Lp~~d-~sF 220 (555)
..+||..|||.|.-...|+++ .|+|+|+++..+..+..+...+. ...+.+.++|+-.++... ++|
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~f 117 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKF 117 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSE
T ss_pred CCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCc
Confidence 358999999999999999986 67777777766544321111100 113578888987776433 579
Q ss_pred cEEEeccccccccc-chHHHHHHHHhhcCCCcEEEEEc---CCCC-CCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 221 ELAHCSRCRIDWLQ-RDGILLLELDRLLRPGGYFVYSS---PEAY-AHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 221 DlVv~s~~~l~~~~-d~~~~L~el~RvLkPGG~lvis~---P~~~-~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
|+|+=..+..-..+ .-.++.+.+.++|+|||.+++.+ +... .-.+.. -.-.++.+++. .+|++...+.
T Consensus 118 D~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~-v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 118 DLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFS-VTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp EEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS-----HHHHHHHHT-TTEEEEEEEE
T ss_pred eEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCC-CCHHHHHHHhc-CCcEEEEEec
Confidence 99995443222222 23669999999999999944432 1110 001111 12246777777 7888776655
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.4e-05 Score=78.58 Aligned_cols=119 Identities=15% Similarity=0.235 Sum_probs=81.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC-CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCC---CCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY---PSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~---~d~sFDlVv~s~~~l~ 231 (555)
.-++|||||=+......-... .|+.+|+.+.. -.+.+.|+...|. +++.||+|+||. +++
T Consensus 52 ~lrlLEVGals~~N~~s~~~~fdvt~IDLns~~---------------~~I~qqDFm~rplp~~~~e~FdvIs~SL-VLN 115 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTSGWFDVTRIDLNSQH---------------PGILQQDFMERPLPKNESEKFDVISLSL-VLN 115 (219)
T ss_pred cceEEeecccCCCCcccccCceeeEEeecCCCC---------------CCceeeccccCCCCCCcccceeEEEEEE-EEe
Confidence 368999999865433322221 45666665422 1245667666665 367899999998 799
Q ss_pred cccch---HHHHHHHHhhcCCCcE-----EEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 232 WLQRD---GILLLELDRLLRPGGY-----FVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 232 ~~~d~---~~~L~el~RvLkPGG~-----lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
|++++ ...++.+.+.|+|+|. |+++.|.+-... .-.-..+.+..+++.+||..+..+..
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~N-SRy~~~~~l~~im~~LGf~~~~~~~~ 182 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTN-SRYMTEERLREIMESLGFTRVKYKKS 182 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhc-ccccCHHHHHHHHHhCCcEEEEEEec
Confidence 99988 4489999999999999 999988752100 00012347889999999998876543
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.7e-05 Score=88.24 Aligned_cols=122 Identities=18% Similarity=0.189 Sum_probs=84.5
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCC--CCCCCCccEEEecc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL--PYPSRSFELAHCSR 227 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~L--p~~d~sFDlVv~s~ 227 (555)
....+||||||.|.++..+|.. .++|+|+...-+..+.. .+.+.+. ++.+...|+..+ -++++++|.|+..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~-~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLK-LAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHH-HHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 4568999999999999999863 78999998876655553 3344444 556665565322 26788999999777
Q ss_pred cccccccch--------HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcC-cEEE
Q 008748 228 CRIDWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIV 286 (555)
Q Consensus 228 ~~l~~~~d~--------~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g-w~vv 286 (555)
.-.|.... ..++..+.++|+|||.+.+.+-. + ..+..+...+++.+ |+..
T Consensus 426 -PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~------~--~y~~~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 426 -PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI------E--NYFYEAIELIQQNGNFEII 484 (506)
T ss_pred -CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC------H--HHHHHHHHHHHhCCCeEec
Confidence 46665322 44899999999999999996532 1 23344455555544 7654
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.5e-05 Score=79.84 Aligned_cols=135 Identities=19% Similarity=0.302 Sum_probs=92.5
Q ss_pred CCCCCCEEEEECCCCcHHHHHHhcC------CCccccCChhhhhHHHHHHHHHcCCC--eEEEEeCCCCC---CCCCCCc
Q 008748 152 NGGNIRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRL---PYPSRSF 220 (555)
Q Consensus 152 ~~~~~~~VLDIGCGtG~~a~~La~~------~V~~vdis~~dls~a~i~~A~~rg~~--v~~~~~d~~~L---p~~d~sF 220 (555)
..+.+-+||||.||.|.+....... .|.-.|+++..+...+ +.++++|.. ++|..+|+.+. .--+-..
T Consensus 132 ~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 132 EQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred hcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccceEEEecCCCCHhHhhccCCCC
Confidence 3456679999999999776655432 4666788887776555 555666654 38888885432 2123357
Q ss_pred cEEEecccccccccch---HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhH---------HHH-------HHHHHHHHhc
Q 008748 221 ELAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFVYSSPEAYAHDPENR---------RIW-------NAMYDLLKSM 281 (555)
Q Consensus 221 DlVv~s~~~l~~~~d~---~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~---------~~~-------~~l~~l~~~~ 281 (555)
++++.+. +++.++|- ...+..+.++|.|||+++.+..+.....+.-. +.| .+|.++++.+
T Consensus 211 ~l~iVsG-L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~a 289 (311)
T PF12147_consen 211 TLAIVSG-LYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAA 289 (311)
T ss_pred CEEEEec-chhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHc
Confidence 9999888 68887774 34788999999999999998855422221100 123 4899999999
Q ss_pred CcEEEEE
Q 008748 282 CWKIVSK 288 (555)
Q Consensus 282 gw~vv~~ 288 (555)
||+.+..
T Consensus 290 GF~K~~q 296 (311)
T PF12147_consen 290 GFEKIDQ 296 (311)
T ss_pred CCchhhh
Confidence 9976543
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.2e-05 Score=77.05 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=61.0
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC----CCeEEEEeCCCC-C--C-CCCCCccE
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG----IPSTLGVLGTKR-L--P-YPSRSFEL 222 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg----~~v~~~~~d~~~-L--p-~~d~sFDl 222 (555)
...+|||+|||+|..+..++.. .|+..|..+ -+ +.....++..+ ..+.+...+-.+ . . ...+.||+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l-~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VL-ELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HH-HHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hh-HHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 4469999999999777776653 677888776 33 22223333222 345555555322 1 1 23468999
Q ss_pred EEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 223 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 223 Vv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
|+++.+ +......+.++.-+.++|+++|.++++.+..
T Consensus 123 IlasDv-~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDV-LYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecc-cchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999984 6555666889999999999999988877653
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.9e-05 Score=78.45 Aligned_cols=118 Identities=16% Similarity=0.214 Sum_probs=81.1
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCC---CCCccEEEe
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYP---SRSFELAHC 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~---d~sFDlVv~ 225 (555)
+.+|||.|.|+|+++..|+.. .|...|+...-...++.++.. .+. .+.+...|...-.|. ++.||.|+.
T Consensus 41 G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~-~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfL 119 (247)
T PF08704_consen 41 GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER-HGLDDNVTVHHRDVCEEGFDEELESDFDAVFL 119 (247)
T ss_dssp T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-TTCCTTEEEEES-GGCG--STT-TTSEEEEEE
T ss_pred CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH-cCCCCCceeEecceecccccccccCcccEEEE
Confidence 469999999999999999852 677788877666556555433 343 578888887543332 367999882
Q ss_pred cccccccccchHHHHHHHHhhc-CCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEE
Q 008748 226 SRCRIDWLQRDGILLLELDRLL-RPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 226 s~~~l~~~~d~~~~L~el~RvL-kPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~ 288 (555)
. +++|-.++..+.++| ||||++++-.|.. +.-.+....+++.||..+..
T Consensus 120 -D-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~i--------eQv~~~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 120 -D-----LPDPWEAIPHAKRALKKPGGRICCFSPCI--------EQVQKTVEALREHGFTDIET 169 (247)
T ss_dssp -E-----SSSGGGGHHHHHHHE-EEEEEEEEEESSH--------HHHHHHHHHHHHTTEEEEEE
T ss_pred -e-----CCCHHHHHHHHHHHHhcCCceEEEECCCH--------HHHHHHHHHHHHCCCeeeEE
Confidence 2 356667899999999 8999999988874 33345556677789976643
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1e-05 Score=78.52 Aligned_cols=130 Identities=14% Similarity=0.143 Sum_probs=89.0
Q ss_pred hcCceeeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcCCCccccCChhhhhHHHH
Q 008748 114 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQI 193 (555)
Q Consensus 114 ~~~e~~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~V~~vdis~~dls~a~i 193 (555)
...+.-.|.+.|.+|-...+++.+.+. ... -.++..+.++||+|+|.|.++..++.. .-++.+.++|..++
T Consensus 77 s~TdING~lgrGsMFifSe~QF~klL~----i~~--p~w~~~~~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr 147 (288)
T KOG3987|consen 77 SQTDINGFLGRGSMFIFSEEQFRKLLV----IGG--PAWGQEPVTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMR 147 (288)
T ss_pred hhhccccccccCceEEecHHHHHHHHh----cCC--CccCCCCeeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHH
Confidence 445778889999999888776654443 221 234455679999999999999999875 22334445566666
Q ss_pred HHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCC-CcEEEEEc
Q 008748 194 QFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRP-GGYFVYSS 257 (555)
Q Consensus 194 ~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkP-GG~lvis~ 257 (555)
....+.+-++. ...+..-.+-+||+|.|.+ ++.-..++..+|..+.-+|+| .|.++++.
T Consensus 148 ~rL~kk~ynVl----~~~ew~~t~~k~dli~clN-lLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 148 DRLKKKNYNVL----TEIEWLQTDVKLDLILCLN-LLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHhhcCCcee----eehhhhhcCceeehHHHHH-HHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 65555554432 1111111234599999988 577777888999999999999 89888743
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.6e-05 Score=77.48 Aligned_cols=102 Identities=18% Similarity=0.409 Sum_probs=63.9
Q ss_pred CCCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHH--Hc--CC-------------------------
Q 008748 155 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFAL--ER--GI------------------------- 201 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~--~r--g~------------------------- 201 (555)
.+..+|||||-.|.++..+++ +.|+|+||++.-+..|..+.-. .. ..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 346799999999999999986 4799999988777555432100 00 00
Q ss_pred ------CeEEE----EeC-CCCCCCCCCCccEEEeccc----ccccccch-HHHHHHHHhhcCCCcEEEEE
Q 008748 202 ------PSTLG----VLG-TKRLPYPSRSFELAHCSRC----RIDWLQRD-GILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 202 ------~v~~~----~~d-~~~Lp~~d~sFDlVv~s~~----~l~~~~d~-~~~L~el~RvLkPGG~lvis 256 (555)
++.+. +.+ ..-+.+....||+|.|... .|+|.++. ..+++.+.++|.|||+|++-
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00000 011 1112234467999998531 13333332 55999999999999999973
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.1e-05 Score=81.31 Aligned_cols=120 Identities=14% Similarity=0.127 Sum_probs=79.0
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCC-CCCCCccEEEeccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp-~~d~sFDlVv~s~~~l~~ 232 (555)
.+|||+|||+|.++..++.. .|+++|+++..+..+..+. ...+. ++.+..+|+..+. ...++||+|++.-- +
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~-~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP---r 310 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSA-QMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP---R 310 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHH-HHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC---C
Confidence 58999999999999999864 7889999998886666443 33343 6788888875432 11246999986531 2
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeece
Q 008748 233 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQT 292 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~~ 292 (555)
..-...++..+. .++|++.++++..+. ..-+++..+ .||++...+..-
T Consensus 311 ~G~~~~~l~~l~-~~~p~~ivyvsc~p~--------TlaRDl~~L---~gy~l~~~~~~D 358 (374)
T TIGR02085 311 RGIGKELCDYLS-QMAPKFILYSSCNAQ--------TMAKDIAEL---SGYQIERVQLFD 358 (374)
T ss_pred CCCcHHHHHHHH-hcCCCeEEEEEeCHH--------HHHHHHHHh---cCceEEEEEEec
Confidence 211234555554 479999999876431 122344444 589887665543
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.3e-06 Score=71.47 Aligned_cols=91 Identities=24% Similarity=0.309 Sum_probs=60.2
Q ss_pred eeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhccccc---hhcccccCCCCCCCccchhhccccccccccCCC
Q 008748 404 MDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIG---TVHDWCESFSTYPRTYDLLHAWKVFSEIEERGC 479 (555)
Q Consensus 404 ~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl~g---~~~~~ce~~~typrtydl~h~~~~~s~~~~~~c 479 (555)
+|++||.|-+++.|.+.+. .+|+-++.. ..+...-++.--. ..+.=-+.++.-+.+||++++.++|..+ -
T Consensus 1 LdiG~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~----~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG--ASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL----E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT--CEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS----S
T ss_pred CEecCcCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec----c
Confidence 6999999999999987722 233334432 3344433333211 2222244555556899999999999854 3
Q ss_pred ChhhhhhhhcccccCCceEEE
Q 008748 480 SFEDLLIEMDRMLRPEGFVII 500 (555)
Q Consensus 480 ~~~~~~~e~drilrp~g~~i~ 500 (555)
+...++-||-|+|||||+++|
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 588999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.5e-05 Score=76.42 Aligned_cols=98 Identities=16% Similarity=0.134 Sum_probs=70.9
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCC-eEEEE-eCCC-CCC-CCCCCccEEEe
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP-STLGV-LGTK-RLP-YPSRSFELAHC 225 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~-v~~~~-~d~~-~Lp-~~d~sFDlVv~ 225 (555)
++++||+||.+.|+.+.+|+.. .++++|+++.....++.++++..-.+ +.+.. +|.. .+. ...++||+|+.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 3468999999999999999853 58899999988877776665433222 55555 3532 222 44689999994
Q ss_pred cccccccccchHHHHHHHHhhcCCCcEEEEE
Q 008748 226 SRCRIDWLQRDGILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 226 s~~~l~~~~d~~~~L~el~RvLkPGG~lvis 256 (555)
-. .-.+...++..+.++|+|||.+++-
T Consensus 139 Da----dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 139 DA----DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred eC----ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 33 2234467999999999999999973
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.6e-05 Score=80.06 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=69.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCC-CC-C----CCCCccE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-Y----PSRSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~-Lp-~----~d~sFDl 222 (555)
+++|||||+|+|+.+.+++.. .++++|.++.....+..++. +.|. .+.+..+++.. |+ + ..++||+
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~-~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYE-LAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 468999999999999998852 57889999877766664443 3444 57888888533 22 1 1368999
Q ss_pred EEecccccccccchHHHHHHHHhhcCCCcEEEEE
Q 008748 223 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 223 Vv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis 256 (555)
|+.-.. -.+...++..+.++|+|||.+++-
T Consensus 198 VFIDa~----K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 198 AFVDAD----KRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 995432 233456889999999999999873
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.3e-05 Score=83.42 Aligned_cols=97 Identities=19% Similarity=0.309 Sum_probs=78.7
Q ss_pred EEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 158 NVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
.++|+|||.|....+++. .++++++.++..+..+........ .....+...++...|+++++||.+.+.. +..|.
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld-~~~~~ 191 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE-VVCHA 191 (364)
T ss_pred cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe-ecccC
Confidence 699999999988888774 478888888877766654433222 1223457778999999999999999888 68899
Q ss_pred cchHHHHHHHHhhcCCCcEEEE
Q 008748 234 QRDGILLLELDRLLRPGGYFVY 255 (555)
Q Consensus 234 ~d~~~~L~el~RvLkPGG~lvi 255 (555)
++...++.|++|+++|||+++.
T Consensus 192 ~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 192 PDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred CcHHHHHHHHhcccCCCceEEe
Confidence 9999999999999999999997
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.3e-05 Score=76.10 Aligned_cols=97 Identities=16% Similarity=0.198 Sum_probs=68.7
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCC-CC-----CCCCCccE
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-----YPSRSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~-Lp-----~~d~sFDl 222 (555)
+++||+|||++|+.+.+|+. ..|+++|+++.....++ ++.++.|. .+.+..+|+.. ++ .+.++||+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~-~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR-ENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH-HHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH-HHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 46899999999999999985 37889999887665554 33344443 57888888533 22 12368999
Q ss_pred EEecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 223 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 223 Vv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
|+.-.. -.+...++..+.++|+|||.+++-.
T Consensus 125 VFiDa~----K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDAD----KRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEEST----GGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEccc----ccchhhHHHHHhhhccCCeEEEEcc
Confidence 995432 2334567888999999999999854
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0001 Score=74.48 Aligned_cols=121 Identities=15% Similarity=0.181 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCC--eEE
Q 008748 132 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIP--STL 205 (555)
Q Consensus 132 a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~--v~~ 205 (555)
.+.+.+.+.+.+..... .+...|||+|||+|.++..|+. ..++++|++..++.-+..+. ...+.. +.+
T Consensus 130 TEE~V~~Vid~~~~~~~-----~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~-qr~~l~g~i~v 203 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEH-----SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENA-QRLKLSGRIEV 203 (328)
T ss_pred HHHHHHHHHHHHhhhhh-----cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHH-HHHhhcCceEE
Confidence 35566666665543221 2234799999999998888775 37888888887776655333 332222 222
Q ss_pred EE----eC-CCCCCCCCCCccEEEecccccccc-------------------------cchHHHHHHHHhhcCCCcEEEE
Q 008748 206 GV----LG-TKRLPYPSRSFELAHCSRCRIDWL-------------------------QRDGILLLELDRLLRPGGYFVY 255 (555)
Q Consensus 206 ~~----~d-~~~Lp~~d~sFDlVv~s~~~l~~~-------------------------~d~~~~L~el~RvLkPGG~lvi 255 (555)
.. .| ....+...+.+|+++|+--.+... .....++.-+.|.|+|||.+.+
T Consensus 204 ~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 204 IHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred EecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 22 22 233445678999999853211110 0112256677899999999998
Q ss_pred EcC
Q 008748 256 SSP 258 (555)
Q Consensus 256 s~P 258 (555)
..-
T Consensus 284 e~~ 286 (328)
T KOG2904|consen 284 ELV 286 (328)
T ss_pred Eec
Confidence 664
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.5e-05 Score=77.28 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=85.3
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC---CCeEEEEeCCCCC--CCCCCCccEEEec
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRL--PYPSRSFELAHCS 226 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg---~~v~~~~~d~~~L--p~~d~sFDlVv~s 226 (555)
.+.+|||...|-|+.+...+++ .|..++.++.-+.-+.++= -+++ ..+.++.+|+.++ .|+|.+||+|+--
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNP-wSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNP-WSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCC-CCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 3569999999999999888765 5667777665553332210 0111 2357788886544 3788999999842
Q ss_pred ccccccccc--hHHHHHHHHhhcCCCcEEEEEc--CCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 227 RCRIDWLQR--DGILLLELDRLLRPGGYFVYSS--PEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 227 ~~~l~~~~d--~~~~L~el~RvLkPGG~lvis~--P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
--.+..... -+.+.+|++|+|||||.++--+ |....+ .......+.+.+++.||+++....
T Consensus 213 PPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryr---G~d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 213 PPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYR---GLDLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred CCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccc---cCChhHHHHHHHHhcCceeeeeeh
Confidence 211222221 2568999999999999998544 432111 123456778889999999776543
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.3e-05 Score=81.79 Aligned_cols=97 Identities=16% Similarity=0.265 Sum_probs=66.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCC--eEEEEeCCCCCCCCCCCccEEEeccc--
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRC-- 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~--v~~~~~d~~~Lp~~d~sFDlVv~s~~-- 228 (555)
.++|||||||+|.++..-|++ .|.+++.+... .-+.+.++..+.. +++..+.++++.+|....|+|++-..
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia--~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA--DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH--HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 468999999999988887763 78888887644 4444566666554 56666667666666678999997421
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEE
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFV 254 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lv 254 (555)
.+-+..-...+|-.=.+.|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 11111122445666678999999887
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.2e-05 Score=81.60 Aligned_cols=100 Identities=27% Similarity=0.244 Sum_probs=70.2
Q ss_pred CCEEEEECCCCcHHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 235 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d 235 (555)
...+||+|||.|-++..--...+.+.|++ ...+..++..+.. ...++|+..+|+.+.+||.+++.. ++||...
T Consensus 46 gsv~~d~gCGngky~~~~p~~~~ig~D~c-----~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsia-vihhlsT 118 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVNPLCLIIGCDLC-----TGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIA-VIHHLST 118 (293)
T ss_pred cceeeecccCCcccCcCCCcceeeecchh-----hhhccccccCCCc-eeehhhhhcCCCCCCccccchhhh-hhhhhhh
Confidence 35799999999976543222234455544 3333444433332 677889999999999999999776 6777744
Q ss_pred h---HHHHHHHHhhcCCCcEEEEEcCCCCC
Q 008748 236 D---GILLLELDRLLRPGGYFVYSSPEAYA 262 (555)
Q Consensus 236 ~---~~~L~el~RvLkPGG~lvis~P~~~~ 262 (555)
. ..+++|+.|+|||||...+.......
T Consensus 119 ~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q 148 (293)
T KOG1331|consen 119 RERRERALEELLRVLRPGGNALVYVWALEQ 148 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEehhhc
Confidence 3 55999999999999998887655433
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=6.8e-05 Score=76.23 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=51.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~ 227 (555)
..+|||||||+|.++..|++. .++++|+++.++......+.. ..++.+..+|+..++++ .||.|+++.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~--~~d~Vv~Nl 99 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLP--EFNKVVSNL 99 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCch--hceEEEEcC
Confidence 468999999999999999975 688888888776555433221 34688899999888775 489998754
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.4e-05 Score=77.56 Aligned_cols=68 Identities=16% Similarity=0.089 Sum_probs=51.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s 226 (555)
..+|||||||+|.++..|+++ .++++|+++.++..+..+.. ..++.+..+|+..+++++-.+|.|+++
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcCCHHHcCcceEEEe
Confidence 358999999999999999875 68888888877755543221 257889999988888764335788754
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00013 Score=70.90 Aligned_cols=153 Identities=21% Similarity=0.262 Sum_probs=99.2
Q ss_pred hhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccC-CCceEEEecccCCC-Cchh----HHhhccc--cchhc
Q 008748 378 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMS-ARLK----IIYDRGL--IGTVH 449 (555)
Q Consensus 378 ~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~-~~~wvmnv~p~~~~-~~l~----~i~~rgl--~g~~~ 449 (555)
+.|++++-.-.... ..+.. =..|+|++||.|.++.+|.. .|- ..|+-++.. .-+. .+-+.|+ |-+++
T Consensus 27 ~~~~~~~~d~l~l~-~~l~~--g~~VLDiGcGtG~~al~la~~~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~ 101 (187)
T PRK00107 27 ELWERHILDSLAIA-PYLPG--GERVLDVGSGAGFPGIPLAIARPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVH 101 (187)
T ss_pred HHHHHHHHHHHHHH-hhcCC--CCeEEEEcCCCCHHHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEe
Confidence 38888874322212 22333 25799999999998877653 232 356666654 3232 2333444 44455
Q ss_pred ccccCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcCccceecccccc
Q 008748 450 DWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPR 529 (555)
Q Consensus 450 ~~ce~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~w~~~~~~~~~~ 529 (555)
.-.+.+.. ..+||+|-+..+ ..+.+++-++-|+|||||.+++-+......++.++++.+.|.+.... .-|
T Consensus 102 ~d~~~~~~-~~~fDlV~~~~~--------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~ 171 (187)
T PRK00107 102 GRAEEFGQ-EEKFDVVTSRAV--------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVI-ELT 171 (187)
T ss_pred ccHhhCCC-CCCccEEEEccc--------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeE-EEe
Confidence 55555555 679999987542 34788999999999999999999999999999999999999953211 111
Q ss_pred cccCCCCCceEEEEEec
Q 008748 530 IDALSSSEERVLIAKKK 546 (555)
Q Consensus 530 ~~~~~~~~~~~l~~~k~ 546 (555)
-..+ .++..+.|.+|+
T Consensus 172 ~~~~-~~~~~~~~~~~~ 187 (187)
T PRK00107 172 LPGL-DGERHLVIIRKK 187 (187)
T ss_pred cCCC-CCcEEEEEEecC
Confidence 1112 245567777774
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.70 E-value=5.5e-05 Score=82.80 Aligned_cols=96 Identities=22% Similarity=0.270 Sum_probs=62.3
Q ss_pred CCEEEEECCCCcHHHHHHhc--------CCCccccCChhhhhHHHHHHHHHc--CCCeEEEEeCCCCCCCCCCCccEEEe
Q 008748 156 IRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHC 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~--------~~V~~vdis~~dls~a~i~~A~~r--g~~v~~~~~d~~~Lp~~d~sFDlVv~ 225 (555)
...|||||||+|.++...++ .+|.+++-++......+ +..... +..++++.+|++++..+ ...|+|||
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGDKVTVIHGDMREVELP-EKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEE
Confidence 46899999999988755443 26888888876553333 222223 35799999999999877 47999996
Q ss_pred cccccccccc--hHHHHHHHHhhcCCCcEEE
Q 008748 226 SRCRIDWLQR--DGILLLELDRLLRPGGYFV 254 (555)
Q Consensus 226 s~~~l~~~~d--~~~~L~el~RvLkPGG~lv 254 (555)
--. =.+..+ -...|....|.|||||.++
T Consensus 265 ElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 ELL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 321 112221 1347888899999999887
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00029 Score=68.88 Aligned_cols=93 Identities=18% Similarity=0.249 Sum_probs=61.5
Q ss_pred CEEEEECCCCcHHHHHHhc---C---CCccccCChhhhhHH--HHHHHH------H--cCCCeEEEEeCCCCCCCCCCCc
Q 008748 157 RNVLDVGCGVASFGAYLLS---H---DIIAMSLAPNDVHEN--QIQFAL------E--RGIPSTLGVLGTKRLPYPSRSF 220 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~---~---~V~~vdis~~dls~a--~i~~A~------~--rg~~v~~~~~d~~~Lp~~d~sF 220 (555)
.+.||+|.|+|+++..++. . ...|+|..+.-+..+ .+..-- . ...+..++++|.....-+...|
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~Y 163 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPY 163 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCc
Confidence 5799999999999887763 1 225565544322211 111100 0 0124678889987777677889
Q ss_pred cEEEecccccccccchHHHHHHHHhhcCCCcEEEEE
Q 008748 221 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 221 DlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis 256 (555)
|.|||...+ ....+++...|++||.+++-
T Consensus 164 DaIhvGAaa-------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 164 DAIHVGAAA-------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ceEEEccCc-------cccHHHHHHhhccCCeEEEe
Confidence 999987532 23678888899999999983
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00016 Score=73.94 Aligned_cols=102 Identities=17% Similarity=0.277 Sum_probs=63.5
Q ss_pred CCCEEEEECCCCc----HHHHHHhcC---------CCccccCChhhhhHHHHHH----HHHcC--------------C--
Q 008748 155 NIRNVLDVGCGVA----SFGAYLLSH---------DIIAMSLAPNDVHENQIQF----ALERG--------------I-- 201 (555)
Q Consensus 155 ~~~~VLDIGCGtG----~~a~~La~~---------~V~~vdis~~dls~a~i~~----A~~rg--------------~-- 201 (555)
+.-+|+-+||+|| +++..|.+. +|+|.|++...+..|..-. ...++ .
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3568999999999 344444432 4566666665554443210 00010 0
Q ss_pred ---------CeEEEEeCCCCCCCCCCCccEEEecccccccccch--HHHHHHHHhhcCCCcEEEEEc
Q 008748 202 ---------PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 202 ---------~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~--~~~L~el~RvLkPGG~lvis~ 257 (555)
.+.|...|+..-++..+.||+|+|-+. +-|.+.+ ..++..++..|+|||+|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNV-LIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNV-LIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcce-EEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 134555554443423467999999995 5555444 559999999999999999944
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00033 Score=74.00 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=67.9
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHH----cCCCeEEEEeCCCC-CCCCCCCccEEEe
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKR-LPYPSRSFELAHC 225 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~----rg~~v~~~~~d~~~-Lp~~d~sFDlVv~ 225 (555)
.+++||.||+|.|..+..+++. .++.+|+++..+..+...+... ...++.+...|... +....++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4578999999999999988763 5777888777665444332211 13567888888543 2334578999996
Q ss_pred ccccccccc------chHHHHH-HHHhhcCCCcEEEEEc
Q 008748 226 SRCRIDWLQ------RDGILLL-ELDRLLRPGGYFVYSS 257 (555)
Q Consensus 226 s~~~l~~~~------d~~~~L~-el~RvLkPGG~lvis~ 257 (555)
-. .-.... ....+++ .+.+.|+|||.+++-.
T Consensus 183 D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 42 111100 1235777 8999999999998743
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00064 Score=65.47 Aligned_cols=118 Identities=20% Similarity=0.263 Sum_probs=76.7
Q ss_pred CCEEEEECCCCcHHHHHHhc--CCC-----------ccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCc
Q 008748 156 IRNVLDVGCGVASFGAYLLS--HDI-----------IAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSF 220 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~--~~V-----------~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sF 220 (555)
...|||--||+|.+....+. ..+ .|.|+++.++..+..+. ...+. .+.+...|+..+++.++++
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~-~~ag~~~~i~~~~~D~~~l~~~~~~~ 107 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENL-KAAGVEDYIDFIQWDARELPLPDGSV 107 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHH-HHTT-CGGEEEEE--GGGGGGTTSBS
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHH-HhcccCCceEEEecchhhcccccCCC
Confidence 45899999999998866542 333 48999998887776554 33333 4788889999999777899
Q ss_pred cEEEeccccccccc------ch----HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 221 ELAHCSRCRIDWLQ------RD----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 221 DlVv~s~~~l~~~~------d~----~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
|.|++.- .|-. +. ..+++++.|+|++...++++... .+++.++..+|.......
T Consensus 108 d~IvtnP---PyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~-------------~~~~~~~~~~~~~~~~~~ 171 (179)
T PF01170_consen 108 DAIVTNP---PYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNR-------------ELEKALGLKGWRKRKLYN 171 (179)
T ss_dssp CEEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCC-------------CHHHHHTSTTSEEEEEEE
T ss_pred CEEEECc---chhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCH-------------HHHHHhcchhhceEEEEE
Confidence 9999752 2221 11 34789999999994444443322 356667777887765544
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00011 Score=70.73 Aligned_cols=119 Identities=16% Similarity=0.118 Sum_probs=75.7
Q ss_pred CCCEEEEECCCCcHHHHHH--hc-CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 155 NIRNVLDVGCGVASFGAYL--LS-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~L--a~-~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..++|+|+|||||.++... +. ..|+++|+++..+..+. +.+.+.+..+.+.++|+.++. +.||.|+.+--.=.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r-~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIAR-ANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHH-HHHHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 3468999999999776544 44 48999999998875555 455556667999999988776 56888886531111
Q ss_pred ccc-chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 232 WLQ-RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 232 ~~~-d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
+.. ....++....++- -++.+.... ...+-+++.++..|+.+....
T Consensus 121 ~~rhaDr~Fl~~Ale~s----~vVYsiH~a--------~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 121 QRRHADRPFLLKALEIS----DVVYSIHKA--------GSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred ccccCCHHHHHHHHHhh----heEEEeecc--------ccHHHHHHHHHhcCCeEEEEE
Confidence 111 1133555555553 334333222 123456778899998776554
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=97.63 E-value=9.4e-06 Score=74.81 Aligned_cols=96 Identities=24% Similarity=0.431 Sum_probs=66.6
Q ss_pred CcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhccccchhcccccCCCCCCCccchhhcccccccccc
Q 008748 398 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 476 (555)
Q Consensus 398 ~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl~g~~~~~ce~~~typrtydl~h~~~~~s~~~~ 476 (555)
..-.+|||++||.|.|+..|.+.+. .|+-++.. ..+.. +-....-++=.+. ..-+.+||+|.+.++|..+.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~~~-~~~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFDAQDP-PFPDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEECHTH-HCHSSSEEEEEEESSGGGSS-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhhhhhh-hccccchhhHhhHHHHhhcc-
Confidence 3455899999999999999987655 45555543 23322 2121221211111 12357999999999999654
Q ss_pred CCCChhhhhhhhcccccCCceEEEecch
Q 008748 477 RGCSFEDLLIEMDRMLRPEGFVIIRDKS 504 (555)
Q Consensus 477 ~~c~~~~~~~e~drilrp~g~~i~rd~~ 504 (555)
+...+|-+|=|+|+|||++++.+..
T Consensus 93 ---d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 ---DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp ---HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ---cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 4889999999999999999998764
|
... |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00033 Score=70.92 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=49.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCcc---EEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFE---LAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFD---lVv~s 226 (555)
..+|||||||+|.++..|+++ .++++|+++.++..+..... ...++.+..+|+..++++ .|| +|+++
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~--~~~~v~v~~~D~~~~~~~--~~d~~~~vvsN 101 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLS--LYERLEVIEGDALKVDLP--DFPKQLKVVSN 101 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhC--cCCcEEEEECchhcCChh--HcCCcceEEEc
Confidence 468999999999999999874 68888888876654442221 135678888998888875 466 66644
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00011 Score=74.34 Aligned_cols=96 Identities=13% Similarity=0.037 Sum_probs=66.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCC-CCC------CCCCccE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKR-LPY------PSRSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~-Lp~------~d~sFDl 222 (555)
+++||+||+++|+.+.+|+.. .++++|.++.....+...+.... ...+.+..+++.+ |+- ..++||+
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 468999999999999888752 68889988866555554443322 2457888887533 221 1368999
Q ss_pred EEecccccccccchHHHHHHHHhhcCCCcEEEE
Q 008748 223 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 255 (555)
Q Consensus 223 Vv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvi 255 (555)
|+.-.. -.....++..+.+.|+|||.+++
T Consensus 160 iFiDad----K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 160 IFVDAD----KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred EEecCC----HHHhHHHHHHHHHhcCCCeEEEE
Confidence 995432 22334578888899999999886
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0013 Score=63.17 Aligned_cols=122 Identities=16% Similarity=0.220 Sum_probs=81.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccc--
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRC-- 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~-- 228 (555)
+..+||||||+|..+..|++. -..++|+++... .+..+.|+.++..+..+..|...---+ ++.|+++.+--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~~~~~V~tdl~~~l~~-~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRVHIDVVRTDLLSGLRN-ESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCCccceeehhHHhhhcc-CCccEEEECCCcC
Confidence 467999999999999998874 256789999875 445566776666777777775332222 78888886421
Q ss_pred ------------ccccc--cc----hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEE
Q 008748 229 ------------RIDWL--QR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 229 ------------~l~~~--~d----~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~ 287 (555)
...|. .+ .++++..+..+|.|.|.|++..-... .-+++.++++..||....
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N--------~p~ei~k~l~~~g~~~~~ 190 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN--------KPKEILKILEKKGYGVRI 190 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc--------CHHHHHHHHhhcccceeE
Confidence 11121 11 13477788889999999998764431 123566688888886553
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00066 Score=72.48 Aligned_cols=119 Identities=14% Similarity=0.140 Sum_probs=74.6
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCC-C-CC--------------C
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL-P-YP--------------S 217 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~L-p-~~--------------d 217 (555)
.+|||++||+|.++..|++. .|+++|+++.++..+..+. ...+. ++.+..+|+..+ + +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~-~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNI-AANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHH-HHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 46999999999999998863 7999999999887666444 33344 678888886442 1 10 1
Q ss_pred CCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeece
Q 008748 218 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQT 292 (555)
Q Consensus 218 ~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~~ 292 (555)
..||+|+.--- ...-...++..+. +|++.++++..+. ..-+++..+. + ||++...+..-
T Consensus 287 ~~~D~v~lDPP---R~G~~~~~l~~l~---~~~~ivyvSC~p~--------tlarDl~~L~-~-gY~l~~v~~~D 345 (362)
T PRK05031 287 YNFSTIFVDPP---RAGLDDETLKLVQ---AYERILYISCNPE--------TLCENLETLS-Q-THKVERFALFD 345 (362)
T ss_pred CCCCEEEECCC---CCCCcHHHHHHHH---ccCCEEEEEeCHH--------HHHHHHHHHc-C-CcEEEEEEEcc
Confidence 25899985321 1111133444444 4788888875331 1223455554 3 89887665543
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00033 Score=72.74 Aligned_cols=69 Identities=20% Similarity=0.317 Sum_probs=52.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCCCCCCCccEEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp~~d~sFDlVv~s 226 (555)
..+|||||||+|.++..|++. .++++|+++.++..+..+++... ..++.+..+|+...+++ .||+|+++
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaN 108 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVAN 108 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEec
Confidence 358999999999999999864 68999999888766664443322 34688999998766654 68988854
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00046 Score=65.29 Aligned_cols=103 Identities=16% Similarity=0.054 Sum_probs=74.5
Q ss_pred CCCEEEEECCCCcHHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC-----CCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----YPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp-----~~d~sFDlVv~s~~~ 229 (555)
.+.-||++|.|||-++..++.+.+---++...+.+......-.+..+.+.++.+|+..+. +.+..||.|+|.--.
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPl 127 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPL 127 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecccc
Confidence 345799999999999999998744444444444555555555666777788888876554 556779999987655
Q ss_pred cccccch-HHHHHHHHhhcCCCcEEEEEc
Q 008748 230 IDWLQRD-GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 230 l~~~~d~-~~~L~el~RvLkPGG~lvis~ 257 (555)
+.+.... -++++++...|++||-++..+
T Consensus 128 l~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 128 LNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred ccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 5544333 448999999999999998754
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0014 Score=63.61 Aligned_cols=120 Identities=19% Similarity=0.198 Sum_probs=76.3
Q ss_pred EEEEECCCCcHHHHHHh----cCCCccccCChhhhhHHHHHHHHHcCCC-eEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 158 NVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La----~~~V~~vdis~~dls~a~i~~A~~rg~~-v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
+++|||+|-|.=+..|+ +.+++-+|-...-++ .....+.+.+.. +.+....++. +....+||+|++-. +
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~-FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRA-v--- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVA-FLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARA-V--- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHH-HHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEES-S---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHH-HHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeeh-h---
Confidence 79999999997665554 345777777665432 122334455655 7787777777 44557899999543 2
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 233 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
.....++.-+...|++||.+++.--. ...++..+.....+..+++......
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~~KG~------~~~~El~~~~~~~~~~~~~~~~v~~ 175 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLAYKGP------DAEEELEEAKKAWKKLGLKVLSVPE 175 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEEEESS--------HHHHHTHHHHHHCCCEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEcCC------ChHHHHHHHHhHHHHhCCEEeeecc
Confidence 23467889999999999998874322 1123445666667777777665443
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0012 Score=68.26 Aligned_cols=110 Identities=15% Similarity=0.110 Sum_probs=70.3
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHc----CCCeEEEEeCCCCC-CCCCCCccEEE
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRL-PYPSRSFELAH 224 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~r----g~~v~~~~~d~~~L-p~~d~sFDlVv 224 (555)
+.+++||=||-|.|..++.+++. +++.+||++.-+.-+...+..-. .+++.+...|...+ .-..++||+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 34479999999999999999875 57777777655433332111111 24567777775433 22224899999
Q ss_pred eccccccccc----chHHHHHHHHhhcCCCcEEEEEcCCCCCCC
Q 008748 225 CSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYAHD 264 (555)
Q Consensus 225 ~s~~~l~~~~----d~~~~L~el~RvLkPGG~lvis~P~~~~~~ 264 (555)
+-. .-.-.+ ....+++.++|.|+++|.++.-.-..+..+
T Consensus 155 ~D~-tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 155 VDS-TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD 197 (282)
T ss_pred EcC-CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccch
Confidence 532 111001 126699999999999999998754444343
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00032 Score=75.42 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=69.7
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
.+|||++||+|.++..++.. .|+++|+++..+..+..+.....-....+...|+..+....+.||+|+..- +
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP----~ 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP----F 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----C
Confidence 47999999999999998742 588999998887666644433333345677778655322135799999532 2
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 233 LQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
..+..++....+.+++||++.++..+
T Consensus 135 -Gs~~~~l~~al~~~~~~gilyvSAtD 160 (382)
T PRK04338 135 -GSPAPFLDSAIRSVKRGGLLCVTATD 160 (382)
T ss_pred -CCcHHHHHHHHHHhcCCCEEEEEecC
Confidence 33456788878889999999998643
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00033 Score=70.48 Aligned_cols=101 Identities=18% Similarity=0.226 Sum_probs=65.0
Q ss_pred cCCCcceeEeeccCCcchhhhhccCCCceEEEecccCC-CCchhHHhhccc-cchhcccccCCCCCCCccchhhcccccc
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL-IGTVHDWCESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~-~~~l~~i~~rgl-~g~~~~~ce~~~typrtydl~h~~~~~s 472 (555)
+......+|+|++||.|.++..|.... -.|+-+|- +.-|...-+++- +.....=.|.++..+.+||+|-++..+.
T Consensus 38 l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~ 114 (251)
T PRK10258 38 LPQRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQ 114 (251)
T ss_pred cCccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhh
Confidence 334456789999999999988886542 13444443 244444444431 1111111244554456999998776554
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+. -+...+|-||-|+|+|||.+++..
T Consensus 115 -~~---~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 115 -WC---GNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred -hc---CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 21 247889999999999999999863
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00039 Score=68.22 Aligned_cols=125 Identities=17% Similarity=0.137 Sum_probs=75.5
Q ss_pred hcCceeeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc--C--CCccccCChhhhh
Q 008748 114 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--H--DIIAMSLAPNDVH 189 (555)
Q Consensus 114 ~~~e~~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~--~V~~vdis~~dls 189 (555)
..|-.+.+.-....|.++-..-...+.+++. +..+|||+-||.|.|+..++. . .|.++|++|..+.
T Consensus 70 E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~----------~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~ 139 (200)
T PF02475_consen 70 ENGIRFKVDLSKVYFSPRLSTERRRIANLVK----------PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVE 139 (200)
T ss_dssp ETTEEEEEETTTS---GGGHHHHHHHHTC------------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHH
T ss_pred eCCEEEEEccceEEEccccHHHHHHHHhcCC----------cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHH
Confidence 4455566655566666665544445554432 246899999999999999986 2 6999999998775
Q ss_pred HHHHHHHHHcC-CCeEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEE
Q 008748 190 ENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV 254 (555)
Q Consensus 190 ~a~i~~A~~rg-~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lv 254 (555)
....+....+- ..+....+|...+.. .+.||-|++.. . .....+|..+.+++++||.+-
T Consensus 140 ~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l--p---~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 140 YLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL--P---ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE----T---SSGGGGHHHHHHHEEEEEEEE
T ss_pred HHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC--h---HHHHHHHHHHHHHhcCCcEEE
Confidence 55544433332 236678888877755 68899999653 2 222347889999999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.001 Score=73.37 Aligned_cols=105 Identities=20% Similarity=0.274 Sum_probs=69.0
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCC-CCCCCccEEE---
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAH--- 224 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp-~~d~sFDlVv--- 224 (555)
.+.+|||++||.|.=+.++++. .+++.|++..-+...+. ...+.|. ++.+...|...+. ...+.||.|+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~-nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHA-NISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 3468999999999888877752 57788887765544432 3333354 4566667766553 2236799999
Q ss_pred -ecccc-c--------ccccc--------hHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 225 -CSRCR-I--------DWLQR--------DGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 225 -~s~~~-l--------~~~~d--------~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
||... + .|... ...+|..+.+.|||||+++.++-..
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 55321 1 11111 1347889999999999999988653
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0024 Score=65.63 Aligned_cols=123 Identities=20% Similarity=0.172 Sum_probs=70.5
Q ss_pred CCCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEE--EEeC--CCCCCCCCCCccEEEe
Q 008748 155 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTL--GVLG--TKRLPYPSRSFELAHC 225 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~~v~~--~~~d--~~~Lp~~d~sFDlVv~ 225 (555)
.+++|||+|||+|..+-.+.+ ..++.+|.++.++..+. ..+.. ...... .... ....++. ..|+|++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~-~l~~~-~~~~~~~~~~~~~~~~~~~~~--~~DLvi~ 108 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAK-RLLRA-GPNNRNAEWRRVLYRDFLPFP--PDDLVIA 108 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHH-HHHhc-ccccccchhhhhhhcccccCC--CCcEEEE
Confidence 457999999999975544443 25677777776654333 22221 211111 0111 1122332 3499999
Q ss_pred cccccccccch--HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEE
Q 008748 226 SRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 226 s~~~l~~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~ 288 (555)
++. |.-+.+. ..+++.+-+.+.+ +++|+.|+. +...+...++.+.+.+.|+.++.-
T Consensus 109 s~~-L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt----~~Gf~~i~~aR~~l~~~~~~v~AP 166 (274)
T PF09243_consen 109 SYV-LNELPSAARAELVRSLWNKTAP--VLVLVEPGT----PAGFRRIAEARDQLLEKGAHVVAP 166 (274)
T ss_pred ehh-hhcCCchHHHHHHHHHHHhccC--cEEEEcCCC----hHHHHHHHHHHHHHhhCCCceECC
Confidence 995 4444442 2255555555544 999998874 344455567777777778777643
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0014 Score=69.75 Aligned_cols=117 Identities=13% Similarity=0.109 Sum_probs=72.5
Q ss_pred EEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCC-C-------C---C-----CC
Q 008748 158 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL-P-------Y---P-----SR 218 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~L-p-------~---~-----d~ 218 (555)
+|||+|||+|.++..|++. .|+++|+++.++..+..+.. ..+. ++.+..+|+..+ + + . ..
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~-~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIA-ANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY 278 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHH-HcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence 6999999999999999873 79999999998877664443 3343 578888886442 1 1 0 11
Q ss_pred CccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 219 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 219 sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
.||+|+.--- -..-...++..+ ++|++.++++..+. ..-+++..+.+ +|++...+..
T Consensus 279 ~~d~v~lDPP---R~G~~~~~l~~l---~~~~~ivYvsC~p~--------tlaRDl~~L~~--~Y~l~~v~~~ 335 (353)
T TIGR02143 279 NCSTIFVDPP---RAGLDPDTCKLV---QAYERILYISCNPE--------TLKANLEQLSE--THRVERFALF 335 (353)
T ss_pred CCCEEEECCC---CCCCcHHHHHHH---HcCCcEEEEEcCHH--------HHHHHHHHHhc--CcEEEEEEEc
Confidence 3798884321 111112344444 34888888876431 12335555542 3877766544
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00016 Score=71.22 Aligned_cols=95 Identities=22% Similarity=0.429 Sum_probs=62.1
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCC-CCchhHH----hhccccc---hh-cccccCCCCCCCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKII----YDRGLIG---TV-HDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~-~~~l~~i----~~rgl~g---~~-~~~ce~~~typrtydl~h~~~~ 470 (555)
+.|+|++||.|+++..+.+. +- -+|+-++- ++.+... -+.|+-+ +. .|..+. .+|.+||+|++.++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~--~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~~~~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPH--LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD--PFPDTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCCEeehHHH
Confidence 36999999999998887542 21 13333332 2444332 2345532 22 222221 34679999999888
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
|.... +...++-++.|+|+|||++++.+.
T Consensus 77 l~~~~----~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 77 IHHIK----DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHhCC----CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 87432 367899999999999999998763
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0013 Score=63.92 Aligned_cols=99 Identities=15% Similarity=0.046 Sum_probs=62.1
Q ss_pred CEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC-CCeEEEEeCCCC-CC-C-CCC-CccEEEeccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKR-LP-Y-PSR-SFELAHCSRC 228 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~d~~~-Lp-~-~d~-sFDlVv~s~~ 228 (555)
.+|||++||+|.++..++.+ .|+++|.++..+...+.+...... .++.+..+|+.. +. + ... .||+|+.--
T Consensus 51 ~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP- 129 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP- 129 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc-
Confidence 58999999999999999874 688999988777655544333322 246788888633 22 1 122 367776422
Q ss_pred cccccc-chHHHHHHHH--hhcCCCcEEEEEcC
Q 008748 229 RIDWLQ-RDGILLLELD--RLLRPGGYFVYSSP 258 (555)
Q Consensus 229 ~l~~~~-d~~~~L~el~--RvLkPGG~lvis~P 258 (555)
.|.. ....++..+. .+|+++|.+++-.+
T Consensus 130 --Py~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 130 --PFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred --CCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 2221 2233444443 47899998888554
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.001 Score=61.18 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=52.2
Q ss_pred CCEEEEECCCCcH-HHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCC-CCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVAS-FGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~-~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~-d~sFDlVv~s~~~l~ 231 (555)
..+|||||||+|. ++..|++. .|+++|+++. .++.+++.+ +.+.+.|..+-.+. -+.+|+|.+.+...
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~-----aV~~a~~~~--~~~v~dDlf~p~~~~y~~a~liysirpp~- 88 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFDVIVIDINEK-----AVEKAKKLG--LNAFVDDLFNPNLEIYKNAKLIYSIRPPR- 88 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHH-----HHHHHHHhC--CeEEECcCCCCCHHHHhcCCEEEEeCCCH-
Confidence 4689999999996 88888864 5666666554 455565554 46667776544432 35699999877432
Q ss_pred cccchHHHHHHHHhhc
Q 008748 232 WLQRDGILLLELDRLL 247 (555)
Q Consensus 232 ~~~d~~~~L~el~RvL 247 (555)
+....+.++.+-+
T Consensus 89 ---el~~~~~~la~~~ 101 (134)
T PRK04148 89 ---DLQPFILELAKKI 101 (134)
T ss_pred ---HHHHHHHHHHHHc
Confidence 2233455555544
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0028 Score=64.80 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=73.6
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHH---HHHH-HcCCCeEEEEeCCCCCCCCCCCccEEEecc
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQI---QFAL-ERGIPSTLGVLGTKRLPYPSRSFELAHCSR 227 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i---~~A~-~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~ 227 (555)
+++++||=||.|.|..++.+++. +|+-+|+++..+..+.. ..+. -..+++.+... .. .-..++||+|++-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEEEcC
Confidence 55789999999999999999986 57777777755533321 0111 11334554431 11 11236899999542
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
. ....+.+.+.|.|+|||.++......+.+ ...+..+.+-+++ .|..+
T Consensus 148 -~-----~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~----~~~~~~i~~~l~~-~F~~v 195 (262)
T PRK00536 148 -E-----PDIHKIDGLKRMLKEDGVFISVAKHPLLE----HVSMQNALKNMGD-FFSIA 195 (262)
T ss_pred -C-----CChHHHHHHHHhcCCCcEEEECCCCcccC----HHHHHHHHHHHHh-hCCce
Confidence 1 23568899999999999999865444322 2233444455555 46533
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0024 Score=68.78 Aligned_cols=105 Identities=18% Similarity=0.068 Sum_probs=75.3
Q ss_pred CCEEEEECCCCcHHHHHHhc--C-CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCC-CC---CCCCCccEEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLS--H-DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKR-LP---YPSRSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~--~-~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~-Lp---~~d~sFDlVv~s 226 (555)
+++|||+=|=||.|+.+.+. + .|+.||+|...+.-+..++....- .+..++++|+-. +. -...+||+|+.-
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 57999999999999988775 3 899999998888777766655442 346788888532 22 223489999972
Q ss_pred ccc--------cccccchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 227 RCR--------IDWLQRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 227 ~~~--------l~~~~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
--. ..-..+...++..+.++|+|||.+++++-..
T Consensus 298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 111 1111233558999999999999999988654
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0018 Score=67.97 Aligned_cols=96 Identities=19% Similarity=0.167 Sum_probs=69.0
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeC-CCCCCCCCCCccEEEecccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG-TKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d-~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
.....+|+|.|.|..+..+... .|.++++....+.+++.+.+ +.+..+.+| +++.| . -|+|++..+..|
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~----~gV~~v~gdmfq~~P--~--~daI~mkWiLhd 248 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA----PGVEHVAGDMFQDTP--K--GDAIWMKWILHD 248 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc----CCcceecccccccCC--C--cCeEEEEeeccc
Confidence 3578999999999999998874 46677776655544443332 336666666 34444 3 369999997555
Q ss_pred ccc-chHHHHHHHHhhcCCCcEEEEEcC
Q 008748 232 WLQ-RDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 232 ~~~-d~~~~L~el~RvLkPGG~lvis~P 258 (555)
|.+ +..++|+++...|+|||.+++...
T Consensus 249 wtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 249 WTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 553 337799999999999999999764
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0028 Score=66.61 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=66.9
Q ss_pred CEEEEECCCCcHHHHHHhcC--------CCccccCChhhhhHHHHHHHHHcCCCeEE--EEeCCCC----CCC--CCCCc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--------DIIAMSLAPNDVHENQIQFALERGIPSTL--GVLGTKR----LPY--PSRSF 220 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--------~V~~vdis~~dls~a~i~~A~~rg~~v~~--~~~d~~~----Lp~--~d~sF 220 (555)
..++|+|||.|.=+..|++. .++++|||...+..+..+...+..+.+.+ +.+|..+ ++- .....
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 47999999999766555431 36678888777766665554233344444 5666432 321 12346
Q ss_pred cEEEecccccccccchH--HHHHHHHh-hcCCCcEEEEEc
Q 008748 221 ELAHCSRCRIDWLQRDG--ILLLELDR-LLRPGGYFVYSS 257 (555)
Q Consensus 221 DlVv~s~~~l~~~~d~~--~~L~el~R-vLkPGG~lvis~ 257 (555)
.+|+...+.+...+..+ .+|+++.+ .|+|||.|+|..
T Consensus 158 r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 158 TTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 78887665666655443 48999999 999999999865
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00054 Score=69.81 Aligned_cols=96 Identities=21% Similarity=0.208 Sum_probs=64.7
Q ss_pred eeEeeccCCcchhhhhccCC--CceEEEecccCCC-CchhHHhhcc-------c--cchhcccccCCCCCCCccchhhcc
Q 008748 401 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS-ARLKIIYDRG-------L--IGTVHDWCESFSTYPRTYDLLHAW 468 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~~-~~l~~i~~rg-------l--~g~~~~~ce~~~typrtydl~h~~ 468 (555)
..|+|++||.|.++..|... +-+ +|+-+|-. +-|.+.-+|. . |-..+.-.+.++.=..+||++.+.
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 47999999999998887643 222 45556543 5555554442 1 122233345555323699999987
Q ss_pred ccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 469 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 469 ~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
..+.... +...+|-||-|+|||||.+++-|
T Consensus 153 ~~l~~~~----d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 153 YGLRNVV----DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred cccccCC----CHHHHHHHHHHHcCcCcEEEEEE
Confidence 7766332 47889999999999999998875
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00023 Score=66.84 Aligned_cols=133 Identities=13% Similarity=0.261 Sum_probs=82.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC-----CeEEEEeC--CCCCCCCCCCccEE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-----PSTLGVLG--TKRLPYPSRSFELA 223 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~-----~v~~~~~d--~~~Lp~~d~sFDlV 223 (555)
+++||++|.|--.++..|... .|...|-. +.+...++....++. .......+ .........+||.|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgn--e~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGN--EESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCC--HHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence 368999999965555444432 34444433 333333333333321 11111111 11122334689999
Q ss_pred EecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec-eEEeecC
Q 008748 224 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ-TVIWAKP 298 (555)
Q Consensus 224 v~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~-~~iw~KP 298 (555)
+|+.| +-+.+.-+.+++.+.+.|+|.|..++..|..- +..+.+.+.++..||.+...++. ..+||+-
T Consensus 108 laADC-lFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg-------~sL~kF~de~~~~gf~v~l~enyde~iwqrh 175 (201)
T KOG3201|consen 108 LAADC-LFFDEHHESLVDTIKSLLRPSGRALLFSPRRG-------QSLQKFLDEVGTVGFTVCLEENYDEAIWQRH 175 (201)
T ss_pred Eeccc-hhHHHHHHHHHHHHHHHhCcccceeEecCccc-------chHHHHHHHHHhceeEEEecccHhHHHHHHH
Confidence 99998 44556667799999999999999999888742 34567888899999988776664 4577654
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.013 Score=61.80 Aligned_cols=117 Identities=11% Similarity=0.084 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
++.++|||||++|.|+..|+++ .|+++|..+.+- . ......+.....|......+.+.+|+|+|--
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~--~-----L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDm----- 278 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ--S-----LMDTGQVEHLRADGFKFRPPRKNVDWLVCDM----- 278 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH--h-----hhCCCCEEEEeccCcccCCCCCCCCEEEEec-----
Confidence 4579999999999999999986 577777544321 1 1224567777777544332257899999754
Q ss_pred ccchHHHHHHHHhhcCCC--cEEEEEcCCCCCC-ChhhHHHHHHHHHHHHhcCc
Q 008748 233 LQRDGILLLELDRLLRPG--GYFVYSSPEAYAH-DPENRRIWNAMYDLLKSMCW 283 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPG--G~lvis~P~~~~~-~~e~~~~~~~l~~l~~~~gw 283 (555)
...|..+..-+.+.|..| ..+|+...-.... ..+.......+.+.+.+.|.
T Consensus 279 ve~P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~ 332 (357)
T PRK11760 279 VEKPARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQLDENGI 332 (357)
T ss_pred ccCHHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 245677888888888776 4666655333222 23333345556666767775
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0018 Score=70.50 Aligned_cols=98 Identities=22% Similarity=0.405 Sum_probs=76.8
Q ss_pred EEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc-
Q 008748 158 NVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL- 233 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~- 233 (555)
++|-+|||.-.+...+.+ +.|+.+|+|+..+....+..+ .......+...|...+.|++++||+|+--.. ++.+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedESFdiVIdkGt-lDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFEDESFDIVIDKGT-LDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCCcceeEEEecCc-ccccc
Confidence 799999999999988876 378999999988866665555 3345678899999999999999999997653 3332
Q ss_pred cch---------HHHHHHHHhhcCCCcEEEEEc
Q 008748 234 QRD---------GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 234 ~d~---------~~~L~el~RvLkPGG~lvis~ 257 (555)
.+. ...+.++.|+|++||.++..+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 222 235789999999999977644
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00032 Score=74.27 Aligned_cols=97 Identities=21% Similarity=0.257 Sum_probs=60.7
Q ss_pred cceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhH----Hhhccccc---h-hcccccCCCCCCCccchhhccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRGLIG---T-VHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~----i~~rgl~g---~-~~~~ce~~~typrtydl~h~~~ 469 (555)
.-..|+|++||.|+++..|.+.- -.+|+=++-. ..+.. +-++|+.. . -.|.. .++.=+.+||+|.+..
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~-~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL-NQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc-cCCCCCCCccEEEECC
Confidence 34679999999999998887531 1234333322 33332 23345422 1 12332 2232247999999877
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
.+.++. +...+|-||-|+|||||.++|-+
T Consensus 195 ~~~h~~----d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 195 SGEHMP----DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred chhccC----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 665332 35688999999999999999853
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0043 Score=64.09 Aligned_cols=73 Identities=12% Similarity=0.211 Sum_probs=55.1
Q ss_pred CCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChh-------hHH-HHHHHHHHHHhcCcEEEEEe
Q 008748 218 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE-------NRR-IWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 218 ~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e-------~~~-~~~~l~~l~~~~gw~vv~~~ 289 (555)
++||+|+..+ .+.-..+.-.++..+..+|+|||+++=.+|-.|+...+ ..+ ..+++..+++..||++++++
T Consensus 258 ~~~d~VvTcf-FIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 258 GSYDVVVTCF-FIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CccceEEEEE-EeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 4699998765 45544555668999999999999999888876543221 122 56789999999999999887
Q ss_pred ec
Q 008748 290 DQ 291 (555)
Q Consensus 290 ~~ 291 (555)
..
T Consensus 337 ~I 338 (369)
T KOG2798|consen 337 GI 338 (369)
T ss_pred ee
Confidence 44
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.011 Score=58.75 Aligned_cols=123 Identities=13% Similarity=0.149 Sum_probs=80.1
Q ss_pred CCEEEEECCCCcHHHHHHh----cCCCccccCChhhhhHHHH-HHHHHcCCC-eEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQI-QFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La----~~~V~~vdis~~dls~a~i-~~A~~rg~~-v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
..+++|||+|.|.=+..|+ +.+++-+|-...-+ +.+ +.+.+.+.+ ++++.+-++.+.-....||+|+|-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~--~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRA-- 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI--AFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRA-- 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH--HHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeeh--
Confidence 4699999999997776665 23455565544322 222 233445665 8888888887763211199998543
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
+ .+...++.-+...|++||.+++. ........+.+.+......++.+......
T Consensus 144 v---a~L~~l~e~~~pllk~~g~~~~~------k~~~~~~e~~e~~~a~~~~~~~~~~~~~~ 196 (215)
T COG0357 144 V---ASLNVLLELCLPLLKVGGGFLAY------KGLAGKDELPEAEKAILPLGGQVEKVFSL 196 (215)
T ss_pred c---cchHHHHHHHHHhcccCCcchhh------hHHhhhhhHHHHHHHHHhhcCcEEEEEEe
Confidence 2 23455777888899999987641 12233456778888888888887765544
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0085 Score=63.62 Aligned_cols=97 Identities=22% Similarity=0.243 Sum_probs=58.3
Q ss_pred eEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhH----HhhccccchhcccccCCCCCCCccchhhcccccccc-
Q 008748 402 NVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKI----IYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEI- 474 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~----i~~rgl~g~~~~~ce~~~typrtydl~h~~~~~s~~- 474 (555)
.|+|++||.|.++++|... |.- .|+-+|.. .-|.. +-..|+-+..+ +...++.-+.+||+|-++--|-..
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~--~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKI--RLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCc
Confidence 5999999999999988754 311 13333322 11111 11233333222 233344446899999988766421
Q ss_pred ccCCCChhhhhhhhcccccCCceEEEe
Q 008748 475 EERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 475 ~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
....-..+.++-++-|.|+|||.++|=
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 111112578899999999999999874
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00064 Score=65.56 Aligned_cols=111 Identities=15% Similarity=0.229 Sum_probs=71.3
Q ss_pred eeEeeccCCcchhhhhccC-CCceEEEecccCCC-CchhH----Hhhccc--cchhcccccCCCCCCCccchhhcccccc
Q 008748 401 RNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMS-ARLKI----IYDRGL--IGTVHDWCESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~-~~~wvmnv~p~~~~-~~l~~----i~~rgl--~g~~~~~ce~~~typrtydl~h~~~~~s 472 (555)
.+|+|++||.|.++..|.. .+- ..|+-++.. ..+.+ +-+.|+ |-+.+.=.+.++ ...+||+|-+.. +
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~- 118 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L- 118 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-
Confidence 5899999999987765532 121 235555543 33332 223344 222221122232 357999987765 2
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcC-ccce
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALK-WDGW 522 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~-w~~~ 522 (555)
..+.+++-++.|+|+|||.+++........++.++.++++ |...
T Consensus 119 ------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 119 ------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVE 163 (181)
T ss_pred ------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCce
Confidence 2477888889999999999999998888999988887643 5553
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00079 Score=68.02 Aligned_cols=99 Identities=14% Similarity=0.223 Sum_probs=66.5
Q ss_pred cCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCC-CCchhHHhhccccchhcccccCCCCCCCccchhhcccccc
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~-~~~l~~i~~rgl~g~~~~~ce~~~typrtydl~h~~~~~s 472 (555)
+....-..|+|++||.|.++.+|... |- ..|+=++- +..+...-++++-=+-.|- +.+. ...+||+|+++.+|-
T Consensus 25 l~~~~~~~vLDlGcG~G~~~~~l~~~~p~--~~v~gvD~s~~~~~~a~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~ 100 (255)
T PRK14103 25 VGAERARRVVDLGCGPGNLTRYLARRWPG--AVIEALDSSPEMVAAARERGVDARTGDV-RDWK-PKPDTDVVVSNAALQ 100 (255)
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHhcCCcEEEcCh-hhCC-CCCCceEEEEehhhh
Confidence 44444478999999999999888754 22 23444553 3566666666632111222 2332 235899999999886
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
.+. +...+|-|+-|+|+|||.+++-
T Consensus 101 ~~~----d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 101 WVP----EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred hCC----CHHHHHHHHHHhCCCCcEEEEE
Confidence 332 3578899999999999999985
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.007 Score=66.16 Aligned_cols=121 Identities=18% Similarity=0.166 Sum_probs=81.9
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCC---CCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP---SRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~---d~sFDlVv~s~~~ 229 (555)
+..++||+=||.|.|+..|+++ +|+|+++++.++..++.+.+.....++.|..++++.+... ...+|.|+.---
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPP- 371 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPP- 371 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCC-
Confidence 3468999999999999999964 8999999999998777655555555688888987766532 357899994210
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEE
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~ 288 (555)
-. .-...+++.+. -++|...+++|-.+ ..+.+=...+.+.|+++.+.
T Consensus 372 R~--G~~~~~lk~l~-~~~p~~IvYVSCNP---------~TlaRDl~~L~~~gy~i~~v 418 (432)
T COG2265 372 RA--GADREVLKQLA-KLKPKRIVYVSCNP---------ATLARDLAILASTGYEIERV 418 (432)
T ss_pred CC--CCCHHHHHHHH-hcCCCcEEEEeCCH---------HHHHHHHHHHHhCCeEEEEE
Confidence 00 00123455554 45788888888754 23333445566778765543
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00039 Score=71.43 Aligned_cols=110 Identities=15% Similarity=0.387 Sum_probs=69.0
Q ss_pred HHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCC-CCchhH----HhhccccchhcccccCCCC
Q 008748 384 VVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKI----IYDRGLIGTVHDWCESFST 457 (555)
Q Consensus 384 v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~-~~~l~~----i~~rgl~g~~~~~ce~~~t 457 (555)
++.+...++ |+.|. +|||++||.||++-.+.+. .+ +|+-++- .+++.. |-++||-+...=-|.-+..
T Consensus 51 ~~~~~~~~~--l~~G~--~vLDiGcGwG~~~~~~a~~~g~---~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 51 LDLLCEKLG--LKPGD--RVLDIGCGWGGLAIYAAERYGC---HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHHHHTTTT----TT---EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred HHHHHHHhC--CCCCC--EEEEeCCCccHHHHHHHHHcCc---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence 344445443 66665 8999999999999998765 54 4444443 355554 5688886543322333333
Q ss_pred CCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 458 YPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 458 yprtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
.+-+||-|=+-+.|-+... =+...++-.++|+|+|||.+++..
T Consensus 124 ~~~~fD~IvSi~~~Ehvg~--~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 124 LPGKFDRIVSIEMFEHVGR--KNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp ---S-SEEEEESEGGGTCG--GGHHHHHHHHHHHSETTEEEEEEE
T ss_pred cCCCCCEEEEEechhhcCh--hHHHHHHHHHHHhcCCCcEEEEEe
Confidence 4449998888888876532 247788999999999999999763
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00072 Score=71.11 Aligned_cols=93 Identities=18% Similarity=0.169 Sum_probs=58.8
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-Cch---hHHhh-ccc---cchhcccccCCCCCCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARL---KIIYD-RGL---IGTVHDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l---~~i~~-rgl---~g~~~~~ce~~~typrtydl~h~~~~~ 471 (555)
+.|+|++||.|.|+..|... +.-| +=++.. ..+ ..+-. .+. |-+.+.=-|.++. +.+||+|++.+++
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V---~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLV---VGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEE---EEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 68999999999999888654 2233 333322 111 11100 010 1111111234444 7899999999887
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
-+. -+...+|-++-|.|+|||.+|+.
T Consensus 200 ~H~----~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 200 YHR----RSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred hcc----CCHHHHHHHHHHhcCCCcEEEEE
Confidence 632 35788999999999999999975
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0013 Score=66.56 Aligned_cols=126 Identities=15% Similarity=0.193 Sum_probs=79.8
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHH----cCCCeEEEEeCCCCC-CCCCC-CccEEE
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKRL-PYPSR-SFELAH 224 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~----rg~~v~~~~~d~~~L-p~~d~-sFDlVv 224 (555)
++++||=||-|.|..+..+++. .|+.+|+++.-+..+..-+... ...++.+...|...+ .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 4679999999999999999874 5778888877665444333222 235788888885332 11223 899999
Q ss_pred ecccccccccc----hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEE
Q 008748 225 CSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 285 (555)
Q Consensus 225 ~s~~~l~~~~d----~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~v 285 (555)
.-.. -..... ...+++.+.+.|+|||.+++-....+. .......+.+.+++....+
T Consensus 156 ~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~----~~~~~~~i~~tl~~~F~~v 215 (246)
T PF01564_consen 156 VDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFL----HPELFKSILKTLRSVFPQV 215 (246)
T ss_dssp EESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTT----THHHHHHHHHHHHTTSSEE
T ss_pred EeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCccc----chHHHHHHHHHHHHhCCce
Confidence 6321 111111 256999999999999999986533221 1234556666777766633
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0045 Score=61.49 Aligned_cols=96 Identities=18% Similarity=0.135 Sum_probs=66.9
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCC-CCC-----CCCCCccE
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTK-RLP-----YPSRSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~-~Lp-----~~d~sFDl 222 (555)
++++||||.=||+.+..+|- .+|+++|+......... ++.+..+. .+.+.++.+. .|+ .+.++||+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~-~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGL-ELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhH-HHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 35899999988876666653 37899999887665553 34444443 4667776632 222 35689999
Q ss_pred EEecccccccccchHHHHHHHHhhcCCCcEEEEE
Q 008748 223 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 223 Vv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis 256 (555)
|+. =+|-.+...+..++.++||+||.+++-
T Consensus 153 aFv----DadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 153 AFV----DADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEE----ccchHHHHHHHHHHHhhcccccEEEEe
Confidence 983 334444456899999999999999973
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00045 Score=70.23 Aligned_cols=134 Identities=16% Similarity=0.230 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCcHHHHHHh-c--CCCccccCChhhhhHHHH--------------HH-HHHcCC-------------C-
Q 008748 155 NIRNVLDVGCGVASFGAYLL-S--HDIIAMSLAPNDVHENQI--------------QF-ALERGI-------------P- 202 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La-~--~~V~~vdis~~dls~a~i--------------~~-A~~rg~-------------~- 202 (555)
++.++||||||.-.+-..-+ + .+|+..|+++....+-.. +. +.-.|. .
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 45699999999975533222 2 156666665544321110 11 110111 1
Q ss_pred eEEEEeCCCCC-CCCC-----CCccEEEecccccccc-cch---HHHHHHHHhhcCCCcEEEEEcCCC---CCCC----h
Q 008748 203 STLGVLGTKRL-PYPS-----RSFELAHCSRCRIDWL-QRD---GILLLELDRLLRPGGYFVYSSPEA---YAHD----P 265 (555)
Q Consensus 203 v~~~~~d~~~L-p~~d-----~sFDlVv~s~~~l~~~-~d~---~~~L~el~RvLkPGG~lvis~P~~---~~~~----~ 265 (555)
-.++.+|.... |+.. ..||+|++++| ++.. .+. ...++++.++|||||.|++..--. |... .
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fc-LE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~ 214 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFC-LESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFP 214 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESS-HHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHH-HHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecc
Confidence 13566775443 3332 35999999987 5544 344 448999999999999999865211 0000 0
Q ss_pred hhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 266 ENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 266 e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
-..-.-+.+++.+++.||.+...+
T Consensus 215 ~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 215 CLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp ---B-HHHHHHHHHHTTEEEEEEE
T ss_pred cccCCHHHHHHHHHHcCCEEEecc
Confidence 000022467788899999888766
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0018 Score=67.31 Aligned_cols=120 Identities=15% Similarity=0.170 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc-----------CCCccccCChhhhhHHHHHHHHHc--
Q 008748 133 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----------HDIIAMSLAPNDVHENQIQFALER-- 199 (555)
Q Consensus 133 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-----------~~V~~vdis~~dls~a~i~~A~~r-- 199 (555)
....+.+.+++.. ....+|||-.||+|.|...+.+ ..+.|+|+++....-+..+.....
T Consensus 32 ~~i~~l~~~~~~~--------~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 32 REIVDLMVKLLNP--------KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp HHHHHHHHHHHTT---------TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHhhhhc--------cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 3445566666642 2345899999999998877654 267788888877766665554332
Q ss_pred CCCeEEEEeCCCCCCC-C-CCCccEEEeccccccc--c------------------cchHHHHHHHHhhcCCCcEEEEEc
Q 008748 200 GIPSTLGVLGTKRLPY-P-SRSFELAHCSRCRIDW--L------------------QRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 200 g~~v~~~~~d~~~Lp~-~-d~sFDlVv~s~~~l~~--~------------------~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
.....+...|....+. . .+.||+|+++--.... . .....++..+.+.|++||.++++.
T Consensus 104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 1123466677543332 2 4789999985211111 0 001247889999999999999988
Q ss_pred CCC
Q 008748 258 PEA 260 (555)
Q Consensus 258 P~~ 260 (555)
|..
T Consensus 184 p~~ 186 (311)
T PF02384_consen 184 PNG 186 (311)
T ss_dssp EHH
T ss_pred cch
Confidence 864
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0081 Score=63.46 Aligned_cols=149 Identities=13% Similarity=0.077 Sum_probs=98.0
Q ss_pred eeeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHH
Q 008748 118 KINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQ 194 (555)
Q Consensus 118 ~~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~ 194 (555)
++.+.-....|.++-..-...++++.. .+.+|||+=||.|.|+..+|.. .|.++|++|..+.-...+
T Consensus 161 ~f~vD~~Kv~Fsprl~~ER~Rva~~v~----------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eN 230 (341)
T COG2520 161 RFKVDVAKVYFSPRLSTERARVAELVK----------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKEN 230 (341)
T ss_pred EEEEchHHeEECCCchHHHHHHHhhhc----------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHH
Confidence 344433444555554433334444443 2468999999999999998863 489999999888666655
Q ss_pred HHHHcCCC-eEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHH
Q 008748 195 FALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNA 273 (555)
Q Consensus 195 ~A~~rg~~-v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~ 273 (555)
....+-.. +..+.+|...++...+.||-|++.. ..+...++....+.|++||.+-+..-....... ......
T Consensus 231 i~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~-----p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~--~~~~~~ 303 (341)
T COG2520 231 IRLNKVEGRVEPILGDAREVAPELGVADRIIMGL-----PKSAHEFLPLALELLKDGGIIHYYEFVPEDDIE--ERPEKR 303 (341)
T ss_pred HHhcCccceeeEEeccHHHhhhccccCCEEEeCC-----CCcchhhHHHHHHHhhcCcEEEEEeccchhhcc--cchHHH
Confidence 54444323 6788899888776658899999654 223356899999999999998875432110000 013457
Q ss_pred HHHHHHhcCc
Q 008748 274 MYDLLKSMCW 283 (555)
Q Consensus 274 l~~l~~~~gw 283 (555)
+...+.+.|+
T Consensus 304 i~~~~~~~~~ 313 (341)
T COG2520 304 IKSAARKGGY 313 (341)
T ss_pred HHHHHhhccC
Confidence 7778888876
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.001 Score=67.89 Aligned_cols=97 Identities=23% Similarity=0.350 Sum_probs=59.5
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhcc----ccch-hcccccCCCCCC-Cccchhhccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRG----LIGT-VHDWCESFSTYP-RTYDLLHAWKVFSE 473 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rg----l~g~-~~~~ce~~~typ-rtydl~h~~~~~s~ 473 (555)
..|+|++||+|+++..|.... -..|+-++-. +.+...-+|- -|-. ..|.. .. .|| .+||+|++...|-+
T Consensus 54 ~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~-~~-~~~~~~FD~V~s~~~l~h 129 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDIL-KK-DFPENTFDMIYSRDAILH 129 (263)
T ss_pred CEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcc-cC-CCCCCCeEEEEEhhhHHh
Confidence 469999999999988875431 1244444432 3344333331 1111 11211 11 233 69999998765542
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
+. .-+...++-|+-|+|+|||.+++.|-
T Consensus 130 ~~--~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 130 LS--YADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CC--HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 21 11467899999999999999999764
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0063 Score=68.11 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=19.6
Q ss_pred HHHHhhcCCCcEEEEEcCCCCCCC
Q 008748 241 LELDRLLRPGGYFVYSSPEAYAHD 264 (555)
Q Consensus 241 ~el~RvLkPGG~lvis~P~~~~~~ 264 (555)
..+.++|++||++.++.|..+...
T Consensus 180 ~~~~~lL~~~G~~~~I~P~s~l~~ 203 (524)
T TIGR02987 180 EISLEIANKNGYVSIISPASWLGD 203 (524)
T ss_pred HHHHHhcCCCCEEEEEEChHHhcC
Confidence 457899999999999999875443
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0019 Score=63.97 Aligned_cols=97 Identities=20% Similarity=0.290 Sum_probs=58.5
Q ss_pred eeEeeccCCcchhhhhccCC--CceEEEecccCCC-CchhHH----hhccc--cchhcccccCCCCCCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS-ARLKII----YDRGL--IGTVHDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~~-~~l~~i----~~rgl--~g~~~~~ce~~~typrtydl~h~~~~~ 471 (555)
.+|+|++||.|.++..|.+. +- .+|+=++-. +.+... -+.++ +-+++.=.+.++.-+.+||+|++...|
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 124 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPE--GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGL 124 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEeccc
Confidence 47999999999999888642 21 123333322 333222 12233 122222122333223699999987766
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
.... +...++-|+-|+|+|||.+++.|.
T Consensus 125 ~~~~----~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 125 RNVP----DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ccCC----CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 5322 256788999999999999998753
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.00077 Score=65.58 Aligned_cols=93 Identities=17% Similarity=0.265 Sum_probs=60.2
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHH----hhcccc--chhcccccCCCCCCCccchhhccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKII----YDRGLI--GTVHDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i----~~rgl~--g~~~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
..|+|++||.|.++..|.... ..|+-+|.. +.+..+ -+.|+- ..-.|. +.+ .++.+||+|-+..+|..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~-~~~-~~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLPLRTDAYDI-NAA-ALNEDYDFIFSTVVFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccc-hhc-cccCCCCEEEEeccccc
Confidence 479999999999998887642 256666653 334332 233441 111222 122 23568999998887763
Q ss_pred cccCCCChhhhhhhhcccccCCceEEE
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVII 500 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~ 500 (555)
+.. -....++-++.|.|+|||++++
T Consensus 107 ~~~--~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 107 LQA--GRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred CCH--HHHHHHHHHHHHHhCCCcEEEE
Confidence 321 2467899999999999998554
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0018 Score=63.35 Aligned_cols=98 Identities=26% Similarity=0.289 Sum_probs=61.9
Q ss_pred cceeEeeccCCcchhhhhccCCC-ceEEEecccCC-CCchhHHhhc--cccchh----cccccCCCCCCCccchhhcccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKD-VWVMNVAPVRM-SARLKIIYDR--GLIGTV----HDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~-~wvmnv~p~~~-~~~l~~i~~r--gl~g~~----~~~ce~~~typrtydl~h~~~~ 470 (555)
.-.+|+|++||.|.++..+.+.- .- -+|+-++. ++.+...-++ +.-... .|.. .++.-+.+||+||+..+
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~-~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPE-GRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLPFPDGSFDAVRSDRV 96 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc-cCCCCCCCceEEEEech
Confidence 34579999999999998886431 00 13444443 2445555444 111111 1221 12222368999999998
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
|..+. +...++-++-|+|+|||++++-+
T Consensus 97 ~~~~~----~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 97 LQHLE----DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hhccC----CHHHHHHHHHHHhcCCcEEEEEe
Confidence 87432 46789999999999999998754
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0018 Score=69.67 Aligned_cols=95 Identities=19% Similarity=0.405 Sum_probs=63.2
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCC-CCchhHHhhc--cccchhcccccCCCCCCCccchhhcccccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR--GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 476 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~-~~~l~~i~~r--gl~g~~~~~ce~~~typrtydl~h~~~~~s~~~~ 476 (555)
..|+|++||.|+++..|... .+ .|+-++- +..+...-+| |+ ++ +=-+..+...+.+||+|.+.++|.....
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l-~v-~~~~~D~~~l~~~fD~Ivs~~~~ehvg~ 243 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGL-PV-EIRLQDYRDLNGQFDRIVSVGMFEHVGP 243 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccC-eE-EEEECchhhcCCCCCEEEEeCchhhCCh
Confidence 47999999999999888653 32 4555553 3566655544 22 11 1111122223578999999888874321
Q ss_pred CCCChhhhhhhhcccccCCceEEEec
Q 008748 477 RGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 477 ~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
-....++-++.|+|+|||.+++.+
T Consensus 244 --~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 244 --KNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred --HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 246788999999999999999864
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.004 Score=66.81 Aligned_cols=96 Identities=9% Similarity=0.087 Sum_probs=69.0
Q ss_pred CEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC-CCCCCccEEEeccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-YPSRSFELAHCSRCRI 230 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp-~~d~sFDlVv~s~~~l 230 (555)
-+|||+.||+|..+..++.. .|+++|+++..+.....+.......++.+...|+..+- .....||+|..-
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlD---- 121 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDID---- 121 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeC----
Confidence 47999999999999998863 58899999987765554443332234677777765442 223579999842
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
.| ..+..++..+.+.+++||++.++.
T Consensus 122 Pf-Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 122 PF-GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CC-CCcHHHHHHHHHhcccCCEEEEEe
Confidence 12 344578999999999999999984
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.021 Score=56.76 Aligned_cols=132 Identities=14% Similarity=0.168 Sum_probs=86.9
Q ss_pred CCCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC-C--CCCCccEEEec
Q 008748 155 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-Y--PSRSFELAHCS 226 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp-~--~d~sFDlVv~s 226 (555)
++.+||-+|+.+|....++++ ..|.++++++... ...+..|.+| .++.-+..|+..-. | --+..|+|++-
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~~la~~R-~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLLNLAKKR-PNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHS-TTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHHHHhccC-CceeeeeccCCChHHhhcccccccEEEec
Confidence 346899999999988887775 2578999999765 4445777776 46666667764221 1 12479999964
Q ss_pred ccccccccchHHHHHHHHhhcCCCcEEEEEcCCC-CCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 227 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA-YAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 227 ~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~-~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
- ......+.++.++...||+||.++++.... ..........|.+-.+.+++.+|++.+....
T Consensus 151 V---aQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~L 213 (229)
T PF01269_consen 151 V---AQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITL 213 (229)
T ss_dssp ----SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-
T ss_pred C---CChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEecc
Confidence 3 222334568889999999999999976441 1112233457887778888889998876553
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.017 Score=58.83 Aligned_cols=69 Identities=19% Similarity=0.150 Sum_probs=52.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCC-CccEEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSR-SFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~-sFDlVv~s 226 (555)
..+|||||+|.|.++..|+++ .|+++++++..+..-....+ ...+..++.+|+....+++- .++.|+++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchhhcCCCEEEEc
Confidence 468999999999999999985 78999998866533332221 34678899999988888753 57888854
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.024 Score=55.77 Aligned_cols=91 Identities=14% Similarity=0.102 Sum_probs=61.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--------CCCCCccE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--------~~d~sFDl 222 (555)
+.+|+|+|+-.|+++..+++. .|+++|+.+.+. ...+.+.++|+..-+ +....+|+
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~V~~iq~d~~~~~~~~~l~~~l~~~~~Dv 114 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLEKLLEALGGAPVDV 114 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCCceEEeeeccCccHHHHHHHHcCCCCcce
Confidence 468999999999999998864 488999988765 234777778764432 33445799
Q ss_pred EEeccc---ccccccch-------HHHHHHHHhhcCCCcEEEEEc
Q 008748 223 AHCSRC---RIDWLQRD-------GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 223 Vv~s~~---~l~~~~d~-------~~~L~el~RvLkPGG~lvis~ 257 (555)
|+|-.. .-++..|. ..++.-+..+|+|||.|++-.
T Consensus 115 V~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 115 VLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred EEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 996321 11111111 335666778999999999855
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.003 Score=66.20 Aligned_cols=94 Identities=11% Similarity=0.089 Sum_probs=57.5
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCCC----chhHHh----hccccchhcccccCCCCCCCccchhhcccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSA----RLKIIY----DRGLIGTVHDWCESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~~----~l~~i~----~rgl~g~~~~~ce~~~typrtydl~h~~~~~s 472 (555)
+.|+|++||.|.++.+|.....- .|+-++... +...+- ..+.+.+..-=.|.++. +.+||+|-+.+++-
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~ 199 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVLY 199 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchhh
Confidence 68999999999998877654221 234344321 111110 01111111111123332 34899999999876
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
+. -+..++|-|+-|+|||||.+|+.
T Consensus 200 H~----~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 200 HR----KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred cc----CCHHHHHHHHHHhcCCCCEEEEE
Confidence 42 35789999999999999999975
|
Known examples to date are restricted to the proteobacteria. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.00092 Score=67.61 Aligned_cols=93 Identities=18% Similarity=0.230 Sum_probs=63.3
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----ccccc---hhc-ccccCCC-CCCCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGLIG---TVH-DWCESFS-TYPRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl~g---~~~-~~ce~~~-typrtydl~h~~~~ 470 (555)
..|+|++||.|.++..|.... -+|+-++.. ..+...-+ .|+.. +.+ |..+ +. ..+.+||+|.+.++
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~-l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQD-IAQHLETPVDLILFHAV 121 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHH-HhhhcCCCCCEEEehhH
Confidence 489999999999999998753 356666643 45544332 34422 111 1111 22 23579999999988
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
|..+. +...++-++-|+|+|||.+++-
T Consensus 122 l~~~~----~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 122 LEWVA----DPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHhhC----CHHHHHHHHHHHcCCCeEEEEE
Confidence 87443 3568899999999999999864
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0011 Score=64.73 Aligned_cols=93 Identities=19% Similarity=0.303 Sum_probs=61.3
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhH----Hhhcccc---chhcccccCCCCCCCccchhhcccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRGLI---GTVHDWCESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~----i~~rgl~---g~~~~~ce~~~typrtydl~h~~~~~s 472 (555)
-+|+|++||.|.++..|.+.- + +|+-++.. .-+.. +-.+|+- ....|..+ + +++.+||+|-+..+|-
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g-~--~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANG-F--DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVVLM 106 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCC-C--EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecchh
Confidence 479999999999999998652 2 55555543 33322 3344542 22345433 2 2367899999887764
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEE
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVII 500 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~ 500 (555)
.+. .-....++-+|-|.|+|||++++
T Consensus 107 ~~~--~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 FLE--AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hCC--HHHHHHHHHHHHHHcCCCcEEEE
Confidence 221 12467899999999999999654
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0017 Score=60.75 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=55.0
Q ss_pred CCCCCCCCCCccEEEecccccccccch--HHHHHHHHhhcCCCcEEEEEcCCCCC------------------C-ChhhH
Q 008748 210 TKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYA------------------H-DPENR 268 (555)
Q Consensus 210 ~~~Lp~~d~sFDlVv~s~~~l~~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~------------------~-~~e~~ 268 (555)
....+|.+++.|+|++.+ +++|.... ..++++++|+|||||++-++.|.... + +....
T Consensus 38 s~e~~F~dns~d~iyaeH-vlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~v 116 (185)
T COG4627 38 SNESMFEDNSVDAIYAEH-VLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRIV 116 (185)
T ss_pred hhhccCCCcchHHHHHHH-HHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHHH
Confidence 456789999999999988 57766433 45899999999999999999987311 1 11122
Q ss_pred HHHHHHHHHHHhcCcEE
Q 008748 269 RIWNAMYDLLKSMCWKI 285 (555)
Q Consensus 269 ~~~~~l~~l~~~~gw~v 285 (555)
..++.+.+.+.+.||.+
T Consensus 117 ~t~r~m~n~~m~~~~~~ 133 (185)
T COG4627 117 KTMRMMFNGFMDAGFVV 133 (185)
T ss_pred HHHHHHHHHHHhhhhee
Confidence 35667788888888754
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0026 Score=61.11 Aligned_cols=113 Identities=11% Similarity=0.068 Sum_probs=71.4
Q ss_pred cceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHh----hccccchhcccc-cCCCCCCCccchhhccccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIY----DRGLIGTVHDWC-ESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~----~rgl~g~~~~~c-e~~~typrtydl~h~~~~~ 471 (555)
.-.+|+|++||.|.++.++... |- -+|+-++.. ..+...- ..|+-. ..-.+ .....++..||++.+++..
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~~~~~~~D~v~~~~~~ 107 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPS--LQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPIELPGKADAIFIGGSG 107 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchhhcCcCCCEEEECCCc
Confidence 3457999999999998877542 21 234444432 3333221 123211 11011 1123446789999876543
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEec-chhHHHHHHHHHhhcCccc
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDG 521 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~rd-~~~~~~~~~~~~~~~~w~~ 521 (555)
..+..++-++-|+|+|||.+++-+ ..+-..++.++++...++.
T Consensus 108 -------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 108 -------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSE 151 (187)
T ss_pred -------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCc
Confidence 246788889999999999999976 5666788888998888853
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0023 Score=66.11 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=68.6
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCC-CC--CCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKR-LP--YPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~-Lp--~~d~sFDlVv~s~ 227 (555)
.++|||+=|=||.|+.+.+.. .|+.+|.|...+..+..+.+...- ..+.+...|+.. +. -..++||+|++--
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP 203 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence 369999999999999876642 688999999888888766665542 356788888532 21 1236899999831
Q ss_pred c-----ccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 228 C-----RIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 228 ~-----~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
- ...-..+...++..+.++|+|||.+++++-.
T Consensus 204 PsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 204 PSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 1 1111234456889999999999999887644
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0034 Score=61.59 Aligned_cols=96 Identities=18% Similarity=0.212 Sum_probs=59.3
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhcc---ccchhcccccCCCCCCCccchhhcccccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRG---LIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 476 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rg---l~g~~~~~ce~~~typrtydl~h~~~~~s~~~~ 476 (555)
..|+|++||.|.|...|...-. ...|+-++.. .-+...-++. +.-+..|. +.++..+.+||+|.+.+++...
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~~-- 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQWC-- 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhhc--
Confidence 5799999999999988865310 0112223321 2222222221 11111222 3334456799999999887632
Q ss_pred CCCChhhhhhhhcccccCCceEEEec
Q 008748 477 RGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 477 ~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
.+...++-++.|+|+|||.+++..
T Consensus 112 --~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 112 --DDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred --cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 247789999999999999999863
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0045 Score=64.34 Aligned_cols=96 Identities=14% Similarity=0.241 Sum_probs=59.3
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
.+.|||+|||+|.++...+++ .|.+++.+.. ...++ +..+.... ++.++.+-++++.+| +..|+|++-- +
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~M-AqyA~-~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEP--M 252 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEM-AQYAR-KLVASNNLADRITVIPGKIEDIELP-EKVDVIISEP--M 252 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcceEEEEehhHH-HHHHH-HHHhcCCccceEEEccCccccccCc-hhccEEEecc--c
Confidence 468999999999888776653 6777765542 22222 22222222 355666667888777 5799999643 3
Q ss_pred ccccchHHH---HHHHHhhcCCCcEEEEE
Q 008748 231 DWLQRDGIL---LLELDRLLRPGGYFVYS 256 (555)
Q Consensus 231 ~~~~d~~~~---L~el~RvLkPGG~lvis 256 (555)
.++--.++. ....+|.|+|.|..+=+
T Consensus 253 G~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 253 GYMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 332222222 33456999999998743
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0019 Score=59.93 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=54.5
Q ss_pred CCEEEEECCCCcHHHHHHh--c-CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLL--S-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La--~-~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~ 227 (555)
++.++|+|||.|-++...+ + ..|+|+|+.+..+.... +.|.+-..++.+.++|+..+.+..+.||.++.+.
T Consensus 49 gkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~-rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT-RNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred CcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh-hchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 4689999999997774433 2 47899999998775554 4455556777889999988888778999998653
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0044 Score=59.13 Aligned_cols=116 Identities=14% Similarity=0.109 Sum_probs=73.0
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHH----hhccccc--hhcccccCCCCCCCccchhhccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKII----YDRGLIG--TVHDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i----~~rgl~g--~~~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
.+|+|++||.|.++.+|...-. .|+-++-. ..+... ...|+-. +.-|+.+. .+.+||+|-++--|..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---VRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc---cCCcccEEEECCCCCC
Confidence 4699999999999988876432 45545432 333321 1122211 12244443 2469999987755531
Q ss_pred ccc-----------------CCCChhhhhhhhcccccCCceEEEecchhH-HHHHHHHHhhcCccce
Q 008748 474 IEE-----------------RGCSFEDLLIEMDRMLRPEGFVIIRDKSSI-INYIRKFITALKWDGW 522 (555)
Q Consensus 474 ~~~-----------------~~c~~~~~~~e~drilrp~g~~i~rd~~~~-~~~~~~~~~~~~w~~~ 522 (555)
... ...-+..++-++.|+|+|||.+++-+.... ..++.+.++...++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~ 161 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYE 161 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEE
Confidence 110 012257789999999999999998765555 6777777777778763
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.089 Score=52.78 Aligned_cols=126 Identities=17% Similarity=0.253 Sum_probs=84.4
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEE-EEeCCCCCC---CCCCCccEEEec
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTL-GVLGTKRLP---YPSRSFELAHCS 226 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~-~~~d~~~Lp---~~d~sFDlVv~s 226 (555)
-+.+.+||||+-||.|+..++++ .|.++|+.-..++... +..+++.. ...++..+. +. +..|+|+|-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kL-----R~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~D 151 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKL-----RNDPRVIVLERTNVRYLTPEDFT-EKPDLIVID 151 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhH-----hcCCcEEEEecCChhhCCHHHcc-cCCCeEEEE
Confidence 34579999999999999999975 6888888766665443 33444433 233444443 22 357899975
Q ss_pred ccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCC------------CChhhH-HHHHHHHHHHHhcCcEEEEEe
Q 008748 227 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA------------HDPENR-RIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 227 ~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~------------~~~e~~-~~~~~l~~l~~~~gw~vv~~~ 289 (555)
-+.+. ...+|..+..+|+++|.++.-..+.+. +++... ..-.++.+.+...||.+....
T Consensus 152 vSFIS----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 152 VSFIS----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred eehhh----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeE
Confidence 43332 356899999999999998875544221 233332 356688899999999877443
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0029 Score=60.44 Aligned_cols=91 Identities=25% Similarity=0.327 Sum_probs=51.7
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeC---------CCCC-CCCCCC
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG---------TKRL-PYPSRS 219 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d---------~~~L-p~~d~s 219 (555)
...+|||+||++|+|+..++++ .|+++|+.+.... ..+.+..+| +... +-..+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-----------~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-----------QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS------------TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-----------cceeeeecccchhhHHHhhhhhccccccC
Confidence 4579999999999999999875 4778888765211 111221222 1111 111268
Q ss_pred ccEEEeccccccccc----ch-------HHHHHHHHhhcCCCcEEEEEc
Q 008748 220 FELAHCSRCRIDWLQ----RD-------GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 220 FDlVv~s~~~l~~~~----d~-------~~~L~el~RvLkPGG~lvis~ 257 (555)
||+|+|-. ...... +. ...+.-+...|+|||.+++-.
T Consensus 92 ~dlv~~D~-~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 92 FDLVLSDM-APNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp ESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred cceecccc-ccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 99999743 122111 11 124455567899999988755
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0059 Score=59.38 Aligned_cols=147 Identities=11% Similarity=0.109 Sum_probs=82.6
Q ss_pred cCCChhhHhH--hHhhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHh--
Q 008748 366 VGVTTEEFHE--DIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY-- 440 (555)
Q Consensus 366 ~~~~~~~~~~--d~~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~-- 440 (555)
.|++.++|.. +...|++.|..= .+. .+.-..=-.|+||+||.|.|+.++...-----.|+-++.. .-+..+-
T Consensus 8 ~~~~d~~~~~~~~~~~t~~~~r~~--~l~-~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n 84 (198)
T PRK00377 8 PGIPDEEFERDEEIPMTKEEIRAL--ALS-KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN 84 (198)
T ss_pred CCCChHHHccCCCCCCCHHHHHHH--HHH-HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 3677778875 445888877542 121 1222222479999999999977653210000234444432 3333221
Q ss_pred --hccccc---h-hcccccCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEe-cchhHHHHHHHH
Q 008748 441 --DRGLIG---T-VHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKF 513 (555)
Q Consensus 441 --~rgl~g---~-~~~~ce~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r-d~~~~~~~~~~~ 513 (555)
.-|+.. + -.|..+..+.++-.||++...+ ....+..++-++-|+|+|||.+++. -+.+.+.++...
T Consensus 85 ~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~-------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 157 (198)
T PRK00377 85 AEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG-------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSA 157 (198)
T ss_pred HHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC-------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHH
Confidence 123211 1 1233332333334688776432 1134778899999999999999982 345667777777
Q ss_pred HhhcCccce
Q 008748 514 ITALKWDGW 522 (555)
Q Consensus 514 ~~~~~w~~~ 522 (555)
++.+.++..
T Consensus 158 l~~~g~~~~ 166 (198)
T PRK00377 158 LENIGFNLE 166 (198)
T ss_pred HHHcCCCeE
Confidence 776666543
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0019 Score=64.88 Aligned_cols=115 Identities=20% Similarity=0.254 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----ccc--chhcc
Q 008748 378 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GLI--GTVHD 450 (555)
Q Consensus 378 ~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl~--g~~~~ 450 (555)
+.|++.+..... ...+. .|+|+.||+|-++..|.+.-----.|+-+|-+ +-|.+.-+| |+. =..+.
T Consensus 33 ~~wr~~~~~~~~-----~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 33 RRWRRKLIKLLG-----LRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG 105 (233)
T ss_dssp ----SHHHHHHT-------S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred HHHHHHHHhccC-----CCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence 789987765421 22232 89999999999988876531111256666644 666665544 332 12222
Q ss_pred cccCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 451 WCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 451 ~ce~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
=.|.++.-..|||.+=....+-.. ++..-.|-||=|+|||||.++|=|.
T Consensus 106 da~~lp~~d~sfD~v~~~fglrn~----~d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 106 DAEDLPFPDNSFDAVTCSFGLRNF----PDRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp BTTB--S-TT-EEEEEEES-GGG-----SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CHHHhcCCCCceeEEEHHhhHHhh----CCHHHHHHHHHHHcCCCeEEEEeec
Confidence 246666545799998766555422 4578899999999999999987653
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0028 Score=61.99 Aligned_cols=122 Identities=14% Similarity=0.115 Sum_probs=75.3
Q ss_pred cceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHh----hccc--cchh-cccccCCCC-C-CCccchhhc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIY----DRGL--IGTV-HDWCESFST-Y-PRTYDLLHA 467 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~----~rgl--~g~~-~~~ce~~~t-y-prtydl~h~ 467 (555)
.-.+|+|++||.|.++..|... |- .+|+-++-. ..+...- ..|+ +-+. .|+.+.++. + +.+||++-.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 3478999999999998888643 22 134444432 3333221 2233 1112 233233431 3 568999875
Q ss_pred cccccc----cccCCCChhhhhhhhcccccCCceEEEe-cchhHHHHHHHHHhhcCccce
Q 008748 468 WKVFSE----IEERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALKWDGW 522 (555)
Q Consensus 468 ~~~~s~----~~~~~c~~~~~~~e~drilrp~g~~i~r-d~~~~~~~~~~~~~~~~w~~~ 522 (555)
...... ...++.....+|-++.|+|+|||.++|. +....+..+.+.+..-.|.+.
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence 432210 1112234678999999999999999985 777788888888888888774
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0028 Score=66.67 Aligned_cols=94 Identities=15% Similarity=0.230 Sum_probs=65.5
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cc---cchhcccccCCCCCCCccchhhccccccc
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GL---IGTVHDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl---~g~~~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
+|+|++||.|.|+..|.... .+|+-+|.. ..+.+.-++ ++ |-..+.=.|.++..+.+||+|=+.+++.+
T Consensus 134 ~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 79999999999998887532 356666654 445544433 22 11222223445544579999999888875
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEec
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+. +...+|-|+=|+|+|||.++|.+
T Consensus 211 v~----d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 211 VA----NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred cC----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 43 46889999999999999999875
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0073 Score=59.58 Aligned_cols=120 Identities=12% Similarity=0.100 Sum_probs=62.8
Q ss_pred CCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHh---cC-CCccccCChhhhhHHH--HHHHHH-
Q 008748 126 THFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL---SH-DIIAMSLAPNDVHENQ--IQFALE- 198 (555)
Q Consensus 126 ~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La---~~-~V~~vdis~~dls~a~--i~~A~~- 198 (555)
..|..........+.+.+.+ .+....+|||||.|......+ +. ...|+++.+.-...+. .+...+
T Consensus 21 ~~YGEi~~~~~~~il~~~~l--------~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~ 92 (205)
T PF08123_consen 21 ETYGEISPEFVSKILDELNL--------TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKR 92 (205)
T ss_dssp CCGGGCHHHHHHHHHHHTT----------TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHH
T ss_pred cceeecCHHHHHHHHHHhCC--------CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHH
Confidence 34555555555666666553 234689999999997655544 22 4789999876332222 222111
Q ss_pred ---cC---CCeEEEEeCCCCCCCCC---CCccEEEecccccccccchHHHHHHHHhhcCCCcEEEE
Q 008748 199 ---RG---IPSTLGVLGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 255 (555)
Q Consensus 199 ---rg---~~v~~~~~d~~~Lp~~d---~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvi 255 (555)
.+ .++.+..+|+.+.++.. ..-|+|++++. -|.++....|.+...-||+|-+++-
T Consensus 93 ~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~--~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 93 MKHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNT--CFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HHHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--T--TT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred HHHhhcccccceeeccCccccHhHhhhhcCCCEEEEecc--ccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 12 23556666654433210 23699998763 3555666677888888998877664
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0014 Score=67.72 Aligned_cols=111 Identities=16% Similarity=0.240 Sum_probs=70.1
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-CchhH----Hhhcccc--chhcccccCCCCCCCccchhhcccccccc
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRGLI--GTVHDWCESFSTYPRTYDLLHAWKVFSEI 474 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~----i~~rgl~--g~~~~~ce~~~typrtydl~h~~~~~s~~ 474 (555)
+|+|++||.|.++..|.... ..|+-+|.. .-+.. +-+.|+- -...|.-+ .. .+..||+|-+..+|..+
T Consensus 123 ~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~-~~-~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINS-AS-IQEEYDFILSTVVLMFL 197 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhc-cc-ccCCccEEEEcchhhhC
Confidence 79999999999998887653 255555543 33332 3345651 11122211 11 26799999998887643
Q ss_pred ccCCCChhhhhhhhcccccCCceEEEe---cch-----------hHHHHHHHHHhhcCccc
Q 008748 475 EERGCSFEDLLIEMDRMLRPEGFVIIR---DKS-----------SIINYIRKFITALKWDG 521 (555)
Q Consensus 475 ~~~~c~~~~~~~e~drilrp~g~~i~r---d~~-----------~~~~~~~~~~~~~~w~~ 521 (555)
. .-.+..++-+|-|+|+|||++++- +.. -.-++++++... |++
T Consensus 198 ~--~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i 254 (287)
T PRK12335 198 N--RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEI 254 (287)
T ss_pred C--HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEE
Confidence 2 124778999999999999996542 111 124556666666 876
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.12 Score=55.74 Aligned_cols=94 Identities=13% Similarity=0.103 Sum_probs=54.0
Q ss_pred EEEEECCCCcHHHHHHhcCCCccccCChhhhh-HHHHHHHHHcCCCeE-EEEeCCCCCCCCCCCccEEEecccccccccc
Q 008748 158 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVH-ENQIQFALERGIPST-LGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 235 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~~~V~~vdis~~dls-~a~i~~A~~rg~~v~-~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d 235 (555)
+||=++=..|.++..|+...++.+ +..-++ .+..+.+...+.+.. +...+.. -+++ +.+|+|+.-- ---...
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~-~~~~-~~~d~vl~~~--PK~~~~ 120 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI--GDSYISELATRENLRLNGIDESSVKFLDST-ADYP-QQPGVVLIKV--PKTLAL 120 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee--ehHHHHHHHHHHHHHHcCCCcccceeeccc-cccc-CCCCEEEEEe--CCCHHH
Confidence 699999999999999996554433 222222 333334444454322 2222221 1233 4599888321 111112
Q ss_pred hHHHHHHHHhhcCCCcEEEEEc
Q 008748 236 DGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 236 ~~~~L~el~RvLkPGG~lvis~ 257 (555)
.+..+..+.++|.||+.++...
T Consensus 121 l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 121 LEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred HHHHHHHHHhhCCCCCEEEEEE
Confidence 2447888999999999987644
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0044 Score=62.48 Aligned_cols=119 Identities=18% Similarity=0.234 Sum_probs=68.0
Q ss_pred cCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhcc-ccchhc-ccccCCCCCCCccchhhcccc
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDRG-LIGTVH-DWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~rg-l~g~~~-~~ce~~~typrtydl~h~~~~ 470 (555)
+....-.+|+|++||.|.++..|... |. -+|+=++.. .-+...-++- =+.+.. |- +.+. .+.+||+++++..
T Consensus 27 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~ 102 (258)
T PRK01683 27 VPLENPRYVVDLGCGPGNSTELLVERWPA--ARITGIDSSPAMLAEARSRLPDCQFVEADI-ASWQ-PPQALDLIFANAS 102 (258)
T ss_pred CCCcCCCEEEEEcccCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhCCCCeEEECch-hccC-CCCCccEEEEccC
Confidence 33345578999999999999888643 21 133333432 2222221210 011111 11 1111 2469999999988
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEec--ch--hHHHHHHHHHhhcCccc
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD--KS--SIINYIRKFITALKWDG 521 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd--~~--~~~~~~~~~~~~~~w~~ 521 (555)
|..+. +...++-+|-|+|+|||.+++.- +. .....+++++....|.-
T Consensus 103 l~~~~----d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 153 (258)
T PRK01683 103 LQWLP----DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQ 153 (258)
T ss_pred hhhCC----CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHH
Confidence 86332 36789999999999999999852 11 11123445555555653
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0049 Score=63.70 Aligned_cols=111 Identities=12% Similarity=0.159 Sum_probs=66.5
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cccchhcccccCCCC-CCCccchhhcccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GLIGTVHDWCESFST-YPRTYDLLHAWKVFSEI 474 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl~g~~~~~ce~~~t-yprtydl~h~~~~~s~~ 474 (555)
.+|+|++||.|.++.++..... -.|+-++-. .-+....++ |+-......+..... -+..||+|.++.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~-- 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE-- 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH--
Confidence 5799999999998766654432 134444432 333332221 221122222221222 246899999876543
Q ss_pred ccCCCChhhhhhhhcccccCCceEEEecc-hhHHHHHHHHHhhcCccc
Q 008748 475 EERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWDG 521 (555)
Q Consensus 475 ~~~~c~~~~~~~e~drilrp~g~~i~rd~-~~~~~~~~~~~~~~~w~~ 521 (555)
.+..++-++-|+|+|||++++..- .+-.++|.+.+++- |+.
T Consensus 237 -----~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~ 278 (288)
T TIGR00406 237 -----VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTV 278 (288)
T ss_pred -----HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Cce
Confidence 256788899999999999998753 22345666666665 765
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0024 Score=54.51 Aligned_cols=90 Identities=23% Similarity=0.348 Sum_probs=46.7
Q ss_pred eeccCCcchhhhhccCCCceEEEecccCC-CCchhH----Hhhccccc---hhcccccCCCCCC-Cccchhhcccccccc
Q 008748 404 MDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKI----IYDRGLIG---TVHDWCESFSTYP-RTYDLLHAWKVFSEI 474 (555)
Q Consensus 404 ~dm~~~~g~faa~l~~~~~wvmnv~p~~~-~~~l~~----i~~rgl~g---~~~~~ce~~~typ-rtydl~h~~~~~s~~ 474 (555)
||.+||.|.+...|.+.- -...++=+|- ++-|.. +.+.+.-. +-.+--+.+...+ .+||+|.+.++|..+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 699999999999997652 2233444443 244422 22222110 1111222333333 599999999999966
Q ss_pred ccCCCChhhhhhhhcccccCCceE
Q 008748 475 EERGCSFEDLLIEMDRMLRPEGFV 498 (555)
Q Consensus 475 ~~~~c~~~~~~~e~drilrp~g~~ 498 (555)
. ++..++-.+-++|+|||.+
T Consensus 80 -~---~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -E---DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S----HHHHHHHHTTT-TSS-EE
T ss_pred -h---hHHHHHHHHHHHcCCCCCC
Confidence 3 4889999999999999975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0066 Score=62.04 Aligned_cols=134 Identities=13% Similarity=0.180 Sum_probs=81.9
Q ss_pred CChhhHhHhHhhHHHHHHHHHHhhhhccCCCcceeEeeccCCcch----hhhhccCC----CceEEEecccCCC-CchhH
Q 008748 368 VTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGG----FAAALKDK----DVWVMNVAPVRMS-ARLKI 438 (555)
Q Consensus 368 ~~~~~~~~d~~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~----faa~l~~~----~~wvmnv~p~~~~-~~l~~ 438 (555)
+.+..|..|...|....+.....+......+.--+|+|.+||.|- .|-.|.+. +-|...|+-+|-. .-|..
T Consensus 68 i~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~ 147 (264)
T smart00138 68 TNETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEK 147 (264)
T ss_pred cCCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHH
Confidence 344568888899998776654433211122333579999999995 45444331 2345566666643 33332
Q ss_pred Hhhcccc-----------------------------------chhcccccCCCCCCCccchhhccccccccccCCCChhh
Q 008748 439 IYDRGLI-----------------------------------GTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFED 483 (555)
Q Consensus 439 i~~rgl~-----------------------------------g~~~~~ce~~~typrtydl~h~~~~~s~~~~~~c~~~~ 483 (555)
..+|.- =..||-.+.- .-+..||+|.+.++|..+.. =....
T Consensus 148 -Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~yf~~--~~~~~ 223 (264)
T smart00138 148 -ARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIYFDE--PTQRK 223 (264)
T ss_pred -HHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHhCCH--HHHHH
Confidence 222221 0134555432 12478999999988874321 12457
Q ss_pred hhhhhcccccCCceEEEecchh
Q 008748 484 LLIEMDRMLRPEGFVIIRDKSS 505 (555)
Q Consensus 484 ~~~e~drilrp~g~~i~rd~~~ 505 (555)
++-++-|+|+|||++++-....
T Consensus 224 ~l~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 224 LLNRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred HHHHHHHHhCCCeEEEEECccc
Confidence 9999999999999999987543
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.017 Score=56.15 Aligned_cols=99 Identities=15% Similarity=0.166 Sum_probs=61.3
Q ss_pred CCCEEEEECCCCcHHHHHHh--c-CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLL--S-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La--~-~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..++|||+|+|+|..+..-+ . ..|+..|+.+.-. .+..-.+...+..+.+...|... .+..||+|+.+..+..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-QAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-HHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 45799999999996655544 3 3688888886543 33333445556677777666544 4577999998874333
Q ss_pred cccchHHHHHHHHhhcCCCcE-EEEEcCC
Q 008748 232 WLQRDGILLLELDRLLRPGGY-FVYSSPE 259 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~-lvis~P~ 259 (555)
+ +...+++. ..+.|+..|. +++-+|.
T Consensus 155 ~-~~a~~l~~-~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 155 H-TEADRLIP-WKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred c-hHHHHHHH-HHHHHHhCCCEEEEeCCC
Confidence 2 22244666 5555555554 4444554
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0088 Score=60.47 Aligned_cols=107 Identities=16% Similarity=0.127 Sum_probs=64.0
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHh----hccccchhcccccCCCCCCCccchhhccccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY----DRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 475 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~----~rgl~g~~~~~ce~~~typrtydl~h~~~~~s~~~ 475 (555)
.+|+|++||.|..+.++.....= .|+-++-. ..+...- ..|+-...+-.+. .-+||++.++-+..
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-----~~~fD~Vvani~~~--- 190 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELNVYLPQG-----DLKADVIVANILAN--- 190 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEEEccC-----CCCcCEEEEcCcHH---
Confidence 57999999999887776543210 13333322 2333222 2233110110000 11799998764332
Q ss_pred cCCCChhhhhhhhcccccCCceEEEecch-hHHHHHHHHHhhcCccc
Q 008748 476 ERGCSFEDLLIEMDRMLRPEGFVIIRDKS-SIINYIRKFITALKWDG 521 (555)
Q Consensus 476 ~~~c~~~~~~~e~drilrp~g~~i~rd~~-~~~~~~~~~~~~~~w~~ 521 (555)
.+..++-++-|+|+|||.+|+.+.. +-...+.+.+....++.
T Consensus 191 ----~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~ 233 (250)
T PRK00517 191 ----PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTL 233 (250)
T ss_pred ----HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEE
Confidence 1456778999999999999998643 34667777888888876
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0021 Score=55.78 Aligned_cols=96 Identities=23% Similarity=0.282 Sum_probs=59.3
Q ss_pred eEeeccCCcchhhhhccC-CCceEEEecccCCC-CchhHHh----hccccch----hcccccCCCCCCCccchhhccccc
Q 008748 402 NVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMS-ARLKIIY----DRGLIGT----VHDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~-~~~wvmnv~p~~~~-~~l~~i~----~rgl~g~----~~~~ce~~~typrtydl~h~~~~~ 471 (555)
.|+|++||.|.++.+|.. .+-.- |+-++-. ..+.+.- +.++-.- ..|+... ...+..||++.+.+ |
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~~--v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~v~~~~-~ 79 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGAR--VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFD-PDFLEPFDLVICSG-F 79 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTSE--EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGG-TTTSSCEEEEEECS-G
T ss_pred EEEEEcCcCCHHHHHHHhcCCCCE--EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccC-cccCCCCCEEEECC-C
Confidence 689999999999999987 23332 4444432 3444322 2233222 2344122 44455699999999 3
Q ss_pred c--ccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 472 S--EIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 472 s--~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+ .+... -....+|-++-+.|+|||+++|.+
T Consensus 80 ~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPL-DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccch-hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2 11111 234567888999999999999975
|
... |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.011 Score=60.43 Aligned_cols=104 Identities=16% Similarity=0.240 Sum_probs=60.2
Q ss_pred cceeEeeccCCcchhhhhccCC-C-ceEEEecccCCC-CchhHHhhccc-cchh-cccccCCCCCCCccchhhccccccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRMS-ARLKIIYDRGL-IGTV-HDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~-~-~wvmnv~p~~~~-~~l~~i~~rgl-~g~~-~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
.-.+|+|++||.|.+++.|.+. + .=-.+|+-+|-. +.+...-+|.- +... .|- +.++.=+.+||+|.+ +|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~-~~lp~~~~sfD~I~~--~~~- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS-HRLPFADQSLDAIIR--IYA- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec-ccCCCcCCceeEEEE--ecC-
Confidence 3356999999999999888642 1 100245556643 56655554421 1111 121 223322368999974 333
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEecc-hhHHHHHHHHH
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFI 514 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~rd~-~~~~~~~~~~~ 514 (555)
...+-|+.|+|+|||++|+... ..-+.+++.++
T Consensus 161 --------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~ 194 (272)
T PRK11088 161 --------PCKAEELARVVKPGGIVITVTPGPRHLFELKGLI 194 (272)
T ss_pred --------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHHh
Confidence 1235689999999999998632 23344454443
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.077 Score=54.16 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=81.0
Q ss_pred HHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHc--CCCeEEEEe
Q 008748 136 ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER--GIPSTLGVL 208 (555)
Q Consensus 136 ~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~r--g~~v~~~~~ 208 (555)
+..|..++... .+.+||+-|.|+|+++.+++.. .+...|+...-..++..++ ++. +..+.+.+-
T Consensus 94 ia~I~~~L~i~--------PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeF-r~hgi~~~vt~~hr 164 (314)
T KOG2915|consen 94 IAMILSMLEIR--------PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEF-REHGIGDNVTVTHR 164 (314)
T ss_pred HHHHHHHhcCC--------CCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHH-HHhCCCcceEEEEe
Confidence 44566676643 2358999999999999998864 4556666433222232222 223 446788888
Q ss_pred CCCCCCCC--CCCccEEEecccccccccchHHHHHHHHhhcCCCc-EEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEE
Q 008748 209 GTKRLPYP--SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 285 (555)
Q Consensus 209 d~~~Lp~~--d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG-~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~v 285 (555)
|....-|. +..+|.|+-- ++.|-.++--++.+||-+| +|+-.+|-. +.-++--+++.+.||..
T Consensus 165 DVc~~GF~~ks~~aDaVFLD------lPaPw~AiPha~~~lk~~g~r~csFSPCI--------EQvqrtce~l~~~gf~~ 230 (314)
T KOG2915|consen 165 DVCGSGFLIKSLKADAVFLD------LPAPWEAIPHAAKILKDEGGRLCSFSPCI--------EQVQRTCEALRSLGFIE 230 (314)
T ss_pred ecccCCccccccccceEEEc------CCChhhhhhhhHHHhhhcCceEEeccHHH--------HHHHHHHHHHHhCCCce
Confidence 86655543 5779988732 2344567777888999877 555444331 33345566788889965
Q ss_pred EE
Q 008748 286 VS 287 (555)
Q Consensus 286 v~ 287 (555)
+.
T Consensus 231 i~ 232 (314)
T KOG2915|consen 231 IE 232 (314)
T ss_pred EE
Confidence 53
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.024 Score=55.96 Aligned_cols=110 Identities=18% Similarity=0.234 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcCC---CccccCChhhhhHHHHHHHHHcC----CCeEE
Q 008748 133 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHD---IIAMSLAPNDVHENQIQFALERG----IPSTL 205 (555)
Q Consensus 133 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~~---V~~vdis~~dls~a~i~~A~~rg----~~v~~ 205 (555)
..+.+.+++.+. .++++||.||-|-|.....+.++. -+.++..+ ...+.-++.+ .++.+
T Consensus 88 tpiMha~A~ai~---------tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp-----~V~krmr~~gw~ek~nVii 153 (271)
T KOG1709|consen 88 TPIMHALAEAIS---------TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHP-----DVLKRMRDWGWREKENVII 153 (271)
T ss_pred hHHHHHHHHHHh---------hCCceEEEeccchHHHHHHHhhcCCcceEEEecCH-----HHHHHHHhcccccccceEE
Confidence 445556666654 345699999999998888877652 22333333 2223333333 23444
Q ss_pred EEeCCCC-CC-CCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 206 GVLGTKR-LP-YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 206 ~~~d~~~-Lp-~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
..+--++ ++ ++++.||-|+--. .-++-++...+.+.+.|+|||+|.|-+..
T Consensus 154 l~g~WeDvl~~L~d~~FDGI~yDT-y~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 154 LEGRWEDVLNTLPDKHFDGIYYDT-YSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred EecchHhhhccccccCcceeEeec-hhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 4443222 22 5688899999433 23666777778999999999999998743
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.005 Score=59.62 Aligned_cols=131 Identities=18% Similarity=0.179 Sum_probs=75.9
Q ss_pred eeeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHH
Q 008748 118 KINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQ 194 (555)
Q Consensus 118 ~~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~ 194 (555)
.+..|.+ ....+..++..+.+-.++... . -...++||+-||+|.++...+.+ .|+.+|.+...+..-..+
T Consensus 12 ~l~~p~~-~~~RPT~drvrealFniL~~~-~-----~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N 84 (183)
T PF03602_consen 12 KLKTPKG-DNTRPTTDRVREALFNILQPR-N-----LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKN 84 (183)
T ss_dssp EEE-TT---TS-SSSHHHHHHHHHHHHCH-------HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHH
T ss_pred EecCCCC-CCcCCCcHHHHHHHHHHhccc-c-----cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHH
Confidence 3444433 234455566666666666532 0 12368999999999999988765 688888888766544433
Q ss_pred HHHHcCC--CeEEEEeCCC-CCC---CCCCCccEEEecccccccccc--hHHHHHHHH--hhcCCCcEEEEEcCC
Q 008748 195 FALERGI--PSTLGVLGTK-RLP---YPSRSFELAHCSRCRIDWLQR--DGILLLELD--RLLRPGGYFVYSSPE 259 (555)
Q Consensus 195 ~A~~rg~--~v~~~~~d~~-~Lp---~~d~sFDlVv~s~~~l~~~~d--~~~~L~el~--RvLkPGG~lvis~P~ 259 (555)
. ..-+. .+.+...|.. .+. .....||+|+.-- +|... ...++..+. .+|+++|.+++-...
T Consensus 85 ~-~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 85 L-EKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP---PYAKGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp H-HHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred H-HHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 3 33332 3677777732 222 2457899999542 33333 255677766 799999999986533
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.031 Score=59.68 Aligned_cols=105 Identities=22% Similarity=0.329 Sum_probs=67.3
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----C-CccccCChhhhhHHHHHHHHHcCCC-eEEEEeCCCCCC--CCC-CCccEEE
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----D-IIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLP--YPS-RSFELAH 224 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~-V~~vdis~~dls~a~i~~A~~rg~~-v~~~~~d~~~Lp--~~d-~sFDlVv 224 (555)
.+.+|||+.++.|+=+.+|++. . |+++|+++.=+..-. ......|.. +.....|...++ .+. +.||.|+
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~-~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iL 234 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLR-ENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRIL 234 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHH-HHHHHcCCCceEEEecccccccccccccCcCcEEE
Confidence 4479999999999877777753 2 478888775443333 333344544 466777766554 222 3599999
Q ss_pred e----ccc-ccc------cccc----------hHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 225 C----SRC-RID------WLQR----------DGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 225 ~----s~~-~l~------~~~d----------~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
. +.. ++. |... ...+|....++|||||.++.++-..
T Consensus 235 lDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 235 LDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred ECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 6 211 111 1111 1348999999999999999988554
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.022 Score=57.98 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=51.6
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCCCCCCCccEEEec
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCS 226 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp~~d~sFDlVv~s 226 (555)
....||+||-|||.++..|++. .|+++++++.++.+-........ ....++.++|....++| .||.++++
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsN 130 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSN 130 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeecc
Confidence 3468999999999999999874 89999999988866553332111 12357788887777665 59999964
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.009 Score=58.11 Aligned_cols=98 Identities=19% Similarity=0.206 Sum_probs=60.0
Q ss_pred cceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhcc-----ccchhcccccCCCCCCCccchhhccccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDRG-----LIGTVHDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~rg-----l~g~~~~~ce~~~typrtydl~h~~~~~ 471 (555)
.=.+|+|++||.|.++.++... +. --+++-++.. ..+..+-++. +--+..|-.+ .+.-+.+||+|+....+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~-~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPD-RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCC-CceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeeee
Confidence 3458999999999998887543 21 0123333322 3334443332 1111222222 22224589999987766
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
.. -.+...++-++-++|+|||++++-+
T Consensus 117 ~~----~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 117 RN----VTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred CC----cccHHHHHHHHHHHcCCCcEEEEEE
Confidence 52 2357889999999999999999854
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.01 Score=56.32 Aligned_cols=117 Identities=15% Similarity=0.245 Sum_probs=74.5
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHH---------hhccccchhcccccCCCCCCCccchhhccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKII---------YDRGLIGTVHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i---------~~rgl~g~~~~~ce~~~typrtydl~h~~~ 469 (555)
-..|+|++||.|.++..|.... -+|+-++-. +.+... -+||+.-+-+|+.+.+.. .+||+|=++.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~d~vi~n~ 98 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFNP 98 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc--cCceEEEECC
Confidence 3479999999999999987762 355555543 444333 122344455677776543 3799985544
Q ss_pred cccccc-----------------cCCCChhhhhhhhcccccCCceEEEec-chhHHHHHHHHHhhcCccc
Q 008748 470 VFSEIE-----------------ERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDG 521 (555)
Q Consensus 470 ~~s~~~-----------------~~~c~~~~~~~e~drilrp~g~~i~rd-~~~~~~~~~~~~~~~~w~~ 521 (555)
-|.... .....+..++-++.|+|+|||.+++-- +..-..++.+.+....|+.
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~ 168 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEA 168 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCee
Confidence 332100 001225678999999999999887642 2233567888888888876
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.056 Score=53.33 Aligned_cols=119 Identities=13% Similarity=0.085 Sum_probs=75.0
Q ss_pred EEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeC-CCCCCCCCCCccEEEeccccccc
Q 008748 159 VLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLG-TKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 159 VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d-~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
|.||||--|++..+|++. .++++|+++.-+..+..+.+... ...+.+..+| +..++-. +..|.|+.+.+.-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~-e~~d~ivIAGMGG~- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPG-EDVDTIVIAGMGGE- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GG-G---EEEEEEE-HH-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCC-CCCCEEEEecCCHH-
Confidence 689999999999999975 68899999988877776655433 2357788887 4444422 23788887653211
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 233 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
-....|.+....++....|++. |.. ....+.+.+.+.||.++.+.-.
T Consensus 79 --lI~~ILe~~~~~~~~~~~lILq-P~~---------~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 79 --LIIEILEAGPEKLSSAKRLILQ-PNT---------HAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp --HHHHHHHHTGGGGTT--EEEEE-ESS----------HHHHHHHHHHTTEEEEEEEEE
T ss_pred --HHHHHHHhhHHHhccCCeEEEe-CCC---------ChHHHHHHHHHCCCEEEEeEEE
Confidence 1133566666667666677763 331 2457889999999999876544
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0026 Score=61.98 Aligned_cols=114 Identities=16% Similarity=0.346 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCC--CceEEEecccCC---CCchh----HHhhccccchhc
Q 008748 379 IWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM---SARLK----IIYDRGLIGTVH 449 (555)
Q Consensus 379 ~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~---~~~l~----~i~~rgl~g~~~ 449 (555)
.|=++.+ |...|...+...+|+++++.+|+-|-|.+.|... .+.++-++|..- ...|. |-+.++
T Consensus 24 ~~YE~~K-~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~------ 96 (201)
T PF05401_consen 24 SWYERRK-YRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQA------ 96 (201)
T ss_dssp -HHHHHH-HHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES------
T ss_pred CHHHHHH-HHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEEC------
Confidence 4545443 3233333478899999999999999999999754 566666655421 11111 111122
Q ss_pred ccccCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 450 DWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 450 ~~ce~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
|-.+..+ +.+|||||.+.+|--+. +.=.+..++-.|...|+|||.+|+-.
T Consensus 97 dvp~~~P--~~~FDLIV~SEVlYYL~-~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 97 DVPEFWP--EGRFDLIVLSEVLYYLD-DAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp -TTT-----SS-EEEEEEES-GGGSS-SHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCCCC--CCCeeEEEEehHhHcCC-CHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 1122222 46999999999887432 11235667888899999999999753
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.046 Score=63.52 Aligned_cols=117 Identities=16% Similarity=0.188 Sum_probs=71.8
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----ccccc-----hhcccccCCCCCCCccchhhccc-
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGLIG-----TVHDWCESFSTYPRTYDLLHAWK- 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl~g-----~~~~~ce~~~typrtydl~h~~~- 469 (555)
++|+|+.||.|+|+.++.....- .|+-++.. .-|.+.-+ -|+-+ +-.|..+-+....++||+|=.+-
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 58999999999999888754321 35556643 33433221 23310 12233222222367899986542
Q ss_pred ----------cccccccCCCChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcCcccee
Q 008748 470 ----------VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWL 523 (555)
Q Consensus 470 ----------~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~w~~~~ 523 (555)
+|+. .. ....++-..=|+|+|||.+++-....-+....+.+..-.+++++
T Consensus 618 ~f~~~~~~~~~~~~-~~---~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~ 677 (702)
T PRK11783 618 TFSNSKRMEDSFDV-QR---DHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEE 677 (702)
T ss_pred CCCCCCccchhhhH-HH---HHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEE
Confidence 2221 11 24567777789999999999876666666667777777888753
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.054 Score=49.89 Aligned_cols=98 Identities=15% Similarity=0.083 Sum_probs=58.1
Q ss_pred CCCCEEEEECCCCcHHHHHHhc-----C---CCccccCChhhhhHHHHHHHHHcC----CCeEEEEeCCCCCCCCCCCcc
Q 008748 154 GNIRNVLDVGCGVASFGAYLLS-----H---DIIAMSLAPNDVHENQIQFALERG----IPSTLGVLGTKRLPYPSRSFE 221 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~-----~---~V~~vdis~~dls~a~i~~A~~rg----~~v~~~~~d~~~Lp~~d~sFD 221 (555)
....+|+|+|||.|+++..|+. . .|+++|..+..+..+. +.+++.+ ....+...+...... ....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQ-KRAQKLGSDLEKRLSFIQGDIADESS-SDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHH-HHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence 4457899999999999999887 3 7888888876554333 3343333 223344443332221 35567
Q ss_pred EEEecccccccccchHH-HHHHHHhhcCCCcEEEEEcCCC
Q 008748 222 LAHCSRCRIDWLQRDGI-LLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 222 lVv~s~~~l~~~~d~~~-~L~el~RvLkPGG~lvis~P~~ 260 (555)
+++ .+|-..+... +|+-..+ ++-.+++..|=-
T Consensus 102 ~~v----gLHaCG~Ls~~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 102 ILV----GLHACGDLSDRALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred EEE----EeecccchHHHHHHHHHH---cCCCEEEEcCCc
Confidence 777 3555555533 4444444 666666665543
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.017 Score=61.52 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=39.6
Q ss_pred EEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC
Q 008748 158 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR 212 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~ 212 (555)
.|||+-||+|.|+..|++. .|+|+++.+.++..|..+.....-.++.|..+++++
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 7999999999999999984 899999999988777755544444567888776543
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.051 Score=58.49 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=33.4
Q ss_pred CCCCCCccEEEecccccccccch--------------------------------------HHHHHHHHhhcCCCcEEEE
Q 008748 214 PYPSRSFELAHCSRCRIDWLQRD--------------------------------------GILLLELDRLLRPGGYFVY 255 (555)
Q Consensus 214 p~~d~sFDlVv~s~~~l~~~~d~--------------------------------------~~~L~el~RvLkPGG~lvi 255 (555)
-||+++.++++|++ ++||.... ..+|+-=.+-|.|||.+++
T Consensus 157 LfP~~Slh~~~Ss~-slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl 235 (386)
T PLN02668 157 LFPARSIDVFHSAF-SLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFL 235 (386)
T ss_pred ccCCCceEEEEeec-cceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEE
Confidence 38899999999998 59998521 1133444567899999999
Q ss_pred EcCCC
Q 008748 256 SSPEA 260 (555)
Q Consensus 256 s~P~~ 260 (555)
+....
T Consensus 236 ~~~Gr 240 (386)
T PLN02668 236 VCLGR 240 (386)
T ss_pred EEecC
Confidence 87553
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.0048 Score=61.69 Aligned_cols=96 Identities=13% Similarity=0.127 Sum_probs=58.0
Q ss_pred eeEeeccCCcchhhhhccCC---CceEEEecccCCC-CchhHHhhc----ccc----chhcccccCCCCCCCccchhhcc
Q 008748 401 RNVMDMNSNLGGFAAALKDK---DVWVMNVAPVRMS-ARLKIIYDR----GLI----GTVHDWCESFSTYPRTYDLLHAW 468 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~---~~wvmnv~p~~~~-~~l~~i~~r----gl~----g~~~~~ce~~~typrtydl~h~~ 468 (555)
.+|+|++||.|.++..|.+. |-+ +|+-++-. +-|...-++ |.. =+..|.++ ++ . ..+|++.+.
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~--~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~-~~~d~v~~~ 129 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNV--KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH-VE-I-KNASMVILN 129 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CC-C-CCCCEEeee
Confidence 47999999999998877652 332 35555532 333332221 211 11223332 11 1 358888776
Q ss_pred ccccccccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 469 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 469 ~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
..+..+... +...+|-||-|+|+|||.+++.|.
T Consensus 130 ~~l~~~~~~--~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 130 FTLQFLPPE--DRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred cchhhCCHH--HHHHHHHHHHHhcCCCeEEEEeec
Confidence 665532111 246789999999999999999874
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.0063 Score=61.36 Aligned_cols=97 Identities=14% Similarity=0.218 Sum_probs=58.2
Q ss_pred eeEeeccCCcchhhhhccC---CCceEEEecccCCC-CchhHHhhc----cc---cchhcccccCCCCCCCccchhhccc
Q 008748 401 RNVMDMNSNLGGFAAALKD---KDVWVMNVAPVRMS-ARLKIIYDR----GL---IGTVHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~---~~~wvmnv~p~~~~-~~l~~i~~r----gl---~g~~~~~ce~~~typrtydl~h~~~ 469 (555)
..|+|++||.|..+.+|.. .|-| .|+=++.. .-|...-+| |+ +-+++.-.+.++ + ..||++-+..
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~--~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~-~-~~~D~vv~~~ 133 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-I-ENASMVVLNF 133 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-C-CCCCEEehhh
Confidence 4699999999999877754 3443 35555532 444333222 22 222221122222 1 2488877665
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
.+..+.. -....++-||-|+|+|||.+++.|.
T Consensus 134 ~l~~l~~--~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 134 TLQFLEP--SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHHhCCH--HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 5553321 2356899999999999999999873
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.018 Score=56.42 Aligned_cols=93 Identities=17% Similarity=0.295 Sum_probs=58.8
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----ccc------cchhcccccCCCCCCCccchhhcc
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGL------IGTVHDWCESFSTYPRTYDLLHAW 468 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl------~g~~~~~ce~~~typrtydl~h~~ 468 (555)
--+|+|++||.|.++..|.+... .|+=++.. ..+...-+ -|+ .+-..++.. ..|.+||+|.+.
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~D~i~~~ 119 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAE---KGAKSFDVVTCM 119 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhc---CCCCCccEEEeh
Confidence 34899999999999887754321 23333322 22222221 122 122222321 225789999998
Q ss_pred ccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 469 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 469 ~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+++... -+...+|-++.++|+|||.+++.+
T Consensus 120 ~~l~~~----~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 120 EVLEHV----PDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred hHHHhC----CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 877633 247889999999999999999875
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.028 Score=55.82 Aligned_cols=103 Identities=13% Similarity=0.211 Sum_probs=64.5
Q ss_pred CCCcceeEeeccCCcchhhhhccC---CCceEEEecccCCC-CchhHHhhccc-cc--hhcccccCCCCCCCccchhhcc
Q 008748 396 QKNTFRNVMDMNSNLGGFAAALKD---KDVWVMNVAPVRMS-ARLKIIYDRGL-IG--TVHDWCESFSTYPRTYDLLHAW 468 (555)
Q Consensus 396 ~~~~~rn~~dm~~~~g~faa~l~~---~~~wvmnv~p~~~~-~~l~~i~~rgl-~g--~~~~~ce~~~typrtydl~h~~ 468 (555)
...+-..|+|++||.|.++..|.+ +.-...+|+-+|-. +-+....++.- -+ ...-=++.++.-+.+||+|-++
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 334556899999999999877753 11122467777754 55655544421 11 1111134445446799999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 469 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 469 ~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
.+|..+... .+..+|-||-|++| |.++|.|
T Consensus 137 ~~lhh~~d~--~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 137 HFLHHLDDA--EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CeeecCChH--HHHHHHHHHHHhcC--eeEEEec
Confidence 888744321 24568999999999 5666655
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.018 Score=57.44 Aligned_cols=106 Identities=15% Similarity=0.211 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhccccchhcccccCCC
Q 008748 378 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWCESFS 456 (555)
Q Consensus 378 ~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl~g~~~~~ce~~~ 456 (555)
..|++.+-...... +.. -.+|+|++||.|-++.+|.+.- --+|+-+|-. +-|.+.-+++ ...+.-.|.++
T Consensus 35 ~~wr~~~~~~l~~~---~~~--~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp 105 (226)
T PRK05785 35 VRWRAELVKTILKY---CGR--PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--DKVVGSFEALP 105 (226)
T ss_pred HHHHHHHHHHHHHh---cCC--CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--ceEEechhhCC
Confidence 55877654422211 112 2589999999999998887652 1256667754 5555544443 22344456665
Q ss_pred CCCCccchhhccccccccccCCCChhhhhhhhcccccCCc
Q 008748 457 TYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEG 496 (555)
Q Consensus 457 typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g 496 (555)
.=..+||+|-+...+-. --+.+..|-||-|+|||.+
T Consensus 106 ~~d~sfD~v~~~~~l~~----~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 106 FRDKSFDVVMSSFALHA----SDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCEEEEEecChhhc----cCCHHHHHHHHHHHhcCce
Confidence 44579999998775542 2357889999999999954
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.0072 Score=62.60 Aligned_cols=98 Identities=13% Similarity=0.221 Sum_probs=58.8
Q ss_pred cCCCcceeEeeccCCcchhhhhccCC-----CceEEEecccCCCCchhHHhhc-cccchhcccccCCCCCC---Cccchh
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDR-GLIGTVHDWCESFSTYP---RTYDLL 465 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~-----~~wvmnv~p~~~~~~l~~i~~r-gl~g~~~~~ce~~~typ---rtydl~ 465 (555)
|..+. +|||++||.|+|...|.+. .|+.+-+-|....+-+.+.-+| +++-+..|-+.+. .|+ -++|+|
T Consensus 130 IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~-~y~~~~~~vDvV 206 (293)
T PTZ00146 130 IKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQ-KYRMLVPMVDVI 206 (293)
T ss_pred cCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChh-hhhcccCCCCEE
Confidence 45553 7999999999998888653 3555433322111234444343 5666777766432 222 256666
Q ss_pred hccccccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 466 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 466 h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
|+...+. =....+++|+.|+|+|||+++|.
T Consensus 207 -----~~Dva~p-dq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 207 -----FADVAQP-DQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred -----EEeCCCc-chHHHHHHHHHHhccCCCEEEEE
Confidence 4432211 12335677999999999999983
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.025 Score=55.76 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=66.4
Q ss_pred eeEeeccCCcchhhhhccCC--CceEEEecccCCC--CchhHHhhccccchhccccc---------CCCCCCCccchhhc
Q 008748 401 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS--ARLKIIYDRGLIGTVHDWCE---------SFSTYPRTYDLLHA 467 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~~--~~l~~i~~rgl~g~~~~~ce---------~~~typrtydl~h~ 467 (555)
..|+|++||.|+|+..|.+. +-- .|+-++-. +.+ .|+.-+-.|..+ .+. +.+||+|-+
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~--~V~aVDi~~~~~~-----~~v~~i~~D~~~~~~~~~i~~~~~--~~~~D~V~S 123 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKG--RVIACDILPMDPI-----VGVDFLQGDFRDELVLKALLERVG--DSKVQVVMS 123 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCc--eEEEEecccccCC-----CCcEEEecCCCChHHHHHHHHHhC--CCCCCEEec
Confidence 37999999999997665432 100 22222211 111 122222223222 122 357888887
Q ss_pred cccccccccC-------CCChhhhhhhhcccccCCceEEEe-----cchhHHHHHHHHHhhcCccceecccccccccCCC
Q 008748 468 WKVFSEIEER-------GCSFEDLLIEMDRMLRPEGFVIIR-----DKSSIINYIRKFITALKWDGWLSEVEPRIDALSS 535 (555)
Q Consensus 468 ~~~~s~~~~~-------~c~~~~~~~e~drilrp~g~~i~r-----d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 535 (555)
+......... -+..+.+|-|+=|+|+|||.+++. +..+++.+++......+. .-+..+ -..
T Consensus 124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~------~Kp~ss-r~~ 196 (209)
T PRK11188 124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKV------RKPDSS-RAR 196 (209)
T ss_pred CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEE------ECCccc-ccc
Confidence 5422100000 011357899999999999999994 334444444443333332 222221 224
Q ss_pred CCceEEEEEe
Q 008748 536 SEERVLIAKK 545 (555)
Q Consensus 536 ~~~~~l~~~k 545 (555)
+.|..+||..
T Consensus 197 s~e~~~~~~~ 206 (209)
T PRK11188 197 SREVYIVATG 206 (209)
T ss_pred CceeEEEeec
Confidence 6788998864
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.068 Score=56.55 Aligned_cols=159 Identities=18% Similarity=0.160 Sum_probs=95.1
Q ss_pred ceeeeCCCCCCCCccHH-HHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHH
Q 008748 117 EKINFPGGGTHFHDGAD-KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHEN 191 (555)
Q Consensus 117 e~~~F~~~g~~f~~~a~-~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a 191 (555)
+..-|.+|+-+|...-+ +|.+.+.- + .+..-...++||=+|.|.|.-++.|.+. +|+-+|++|.+++-+
T Consensus 256 d~rLYldG~LQfsTrDe~RYhEsLV~--p----als~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela 329 (508)
T COG4262 256 DLRLYLDGGLQFSTRDEYRYHESLVY--P----ALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELA 329 (508)
T ss_pred ceEEEEcCceeeeechhhhhhheeee--c----ccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHh
Confidence 45667777777775443 34433221 1 0111123478999999999999999874 688889998888655
Q ss_pred HHHHHHH---c----CCCeEEEEeCCCCC-CCCCCCccEEEecccccccccc-----hHHHHHHHHhhcCCCcEEEEEcC
Q 008748 192 QIQFALE---R----GIPSTLGVLGTKRL-PYPSRSFELAHCSRCRIDWLQR-----DGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 192 ~i~~A~~---r----g~~v~~~~~d~~~L-p~~d~sFDlVv~s~~~l~~~~d-----~~~~L~el~RvLkPGG~lvis~P 258 (555)
..+.+.. . .+++.++..|+.+. --....||.|+.-. .-.-.+. -..+..-+.|.|+++|.+++...
T Consensus 330 ~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 330 SHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred hhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 4222221 1 23466666664332 23345899998532 0100011 13477888899999999999665
Q ss_pred CCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 259 EAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 259 ~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
..|... +.+-.+.+-++++||.+.
T Consensus 409 s~y~tp----~vfw~i~aTik~AG~~~~ 432 (508)
T COG4262 409 SPYFTP----RVFWRIDATIKSAGYRVW 432 (508)
T ss_pred CCccCC----ceeeeehhHHHhCcceee
Confidence 443221 122245666788998665
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.15 Score=49.60 Aligned_cols=132 Identities=20% Similarity=0.159 Sum_probs=80.1
Q ss_pred eeeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHH
Q 008748 118 KINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQ 194 (555)
Q Consensus 118 ~~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~ 194 (555)
.+.+|.+ ....+-.++..+.+-.++... .-.+.++||+=+|+|.++...+.+ .++.+|.+.........+
T Consensus 13 ~L~~p~~-~~~RPT~drVREalFNil~~~------~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N 85 (187)
T COG0742 13 KLKTPDG-PGTRPTTDRVREALFNILAPD------EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKEN 85 (187)
T ss_pred cccCCCC-CCcCCCchHHHHHHHHhcccc------ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHH
Confidence 4445443 245566677777777776531 123468999999999999998875 678888877665444433
Q ss_pred HHHHcC--CCeEEEEeCCCCC-CCCCC--CccEEEecccccccc-cchHHHHH--HHHhhcCCCcEEEEEcC
Q 008748 195 FALERG--IPSTLGVLGTKRL-PYPSR--SFELAHCSRCRIDWL-QRDGILLL--ELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 195 ~A~~rg--~~v~~~~~d~~~L-p~~d~--sFDlVv~s~~~l~~~-~d~~~~L~--el~RvLkPGG~lvis~P 258 (555)
....+ .+..+...|+... +-... .||+|+.-- ..+.. -+....+. +-...|+|+|.+++-..
T Consensus 86 -~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP-Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 86 -LKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP-PYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred -HHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC-CCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 33334 5667777775432 22222 499999532 22211 11122222 35578999999999554
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.021 Score=59.36 Aligned_cols=69 Identities=13% Similarity=0.015 Sum_probs=47.0
Q ss_pred CEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--CCCC--CccEEEecc
Q 008748 157 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSR--SFELAHCSR 227 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--~~d~--sFDlVv~s~ 227 (555)
..+||.+||.|..+..+++. .|+|+|.++.++..+...... ..++.+...+..++. .+++ ++|.|++-.
T Consensus 21 ~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLGKVDGILLDL 98 (296)
T ss_pred CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCCccCEEEECC
Confidence 58999999999999999864 588888888777655533322 345677777765543 1112 678777643
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.55 Score=46.21 Aligned_cols=133 Identities=14% Similarity=0.151 Sum_probs=89.4
Q ss_pred CCCCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC---CCCCCCccEEEec
Q 008748 154 GNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL---PYPSRSFELAHCS 226 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L---p~~d~sFDlVv~s 226 (555)
.+..+||=+|+-+|....++++ ..+.++++++....+ .+..|.+| .++.-...|+..- ..--+..|+|++-
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~re-Ll~~a~~R-~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D 152 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRE-LLDVAEKR-PNIIPILEDARKPEKYRHLVEKVDVIYQD 152 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHH-HHHHHHhC-CCceeeecccCCcHHhhhhcccccEEEEe
Confidence 3456899999999988887775 258899999987644 44677766 3444455565321 1112458988853
Q ss_pred ccccccccchHHHHHHHHhhcCCCcEEEEEcCCC-CCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 227 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA-YAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 227 ~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~-~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
-+ -....+.+..++...||+||+++++.... .....+..+.+++-.+.+++.+|++.+..+.
T Consensus 153 VA---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~L 215 (231)
T COG1889 153 VA---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDL 215 (231)
T ss_pred cC---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEecc
Confidence 21 11222457889999999999888876442 2233444568887777888889999877665
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.018 Score=57.10 Aligned_cols=95 Identities=14% Similarity=0.263 Sum_probs=61.7
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cccchh--cccccCCCCCCCccchhhccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GLIGTV--HDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl~g~~--~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
..|+|++||.|.++..|.+.. .+|+=++.. +.+...-++ |+-..+ .++.+-....+-+||+|.+.++|..
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 359999999999998887643 355555543 333332222 331112 2232221123368999999888773
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEec
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
. -+...+|-++.|+|+|||.+++.+
T Consensus 127 ~----~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 127 V----PDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred c----CCHHHHHHHHHHHcCCCcEEEEEe
Confidence 3 246789999999999999999874
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.02 Score=55.04 Aligned_cols=129 Identities=16% Similarity=0.188 Sum_probs=66.5
Q ss_pred eeEeeccCCcchhhhhccCC-----CceEEEecccCCCCchhHHhhccccchhcccccCC-------CCCCCccchhhcc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESF-------STYPRTYDLLHAW 468 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-----~~wvmnv~p~~~~~~l~~i~~rgl~g~~~~~ce~~-------~typrtydl~h~~ 468 (555)
.+|+|++||.|+++.++... .|+..=.-|. .. + .|+--+..|..+.. .+-+.+||++=++
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~-----~~--~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM-----KP--I-ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc-----cc--C-CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 47999999999997766432 2444333221 10 0 12222223443321 0113468876654
Q ss_pred cc------ccc-cccCCCChhhhhhhhcccccCCceEEEe----c-chhHHHHHHHHHhhcCccceecccccccccCCCC
Q 008748 469 KV------FSE-IEERGCSFEDLLIEMDRMLRPEGFVIIR----D-KSSIINYIRKFITALKWDGWLSEVEPRIDALSSS 536 (555)
Q Consensus 469 ~~------~s~-~~~~~c~~~~~~~e~drilrp~g~~i~r----d-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 536 (555)
+. .+. .....+.+..+|-++-|+|+|||.+++- + -.+++.+++.. + |.+.+.-. .-....+
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~---~-~~~~~~~~---~~~~~~~ 178 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL---F-EKVKVTKP---QASRKRS 178 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh---h-ceEEEeCC---CCCCccc
Confidence 32 110 0001123468899999999999999983 2 12444444442 2 44432211 1112235
Q ss_pred CceEEEEE
Q 008748 537 EERVLIAK 544 (555)
Q Consensus 537 ~~~~l~~~ 544 (555)
.|+.|||.
T Consensus 179 ~~~~~~~~ 186 (188)
T TIGR00438 179 AEVYIVAK 186 (188)
T ss_pred ceEEEEEe
Confidence 78999985
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.04 Score=55.89 Aligned_cols=135 Identities=20% Similarity=0.352 Sum_probs=77.7
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhc---cccc----hhcccccCCCCCCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR---GLIG----TVHDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~r---gl~g----~~~~~ce~~~typrtydl~h~~~~~ 471 (555)
.+|+|++||.|.++.+|... |-+ +|+-++.. ..+.+.-++ ++.. +-.|+-+.+. +.+||+|-++--+
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~--~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy 185 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDA--EVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPY 185 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCCc
Confidence 46999999999999888643 222 34444432 333332222 2111 1234434332 3689999765333
Q ss_pred cccc------c----CC---------C---ChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcCccceecccccc
Q 008748 472 SEIE------E----RG---------C---SFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPR 529 (555)
Q Consensus 472 s~~~------~----~~---------c---~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~w~~~~~~~~~~ 529 (555)
.... . .. - .+..++-++-++|+|||++++--...--..+++++....+.. +...
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~-v~~~--- 261 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFAD-VETR--- 261 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCce-eEEe---
Confidence 2100 0 00 0 124567778899999999999655555667888888766652 1111
Q ss_pred cccCCCCCceEEEEEe
Q 008748 530 IDALSSSEERVLIAKK 545 (555)
Q Consensus 530 ~~~~~~~~~~~l~~~k 545 (555)
.+ + .+.+++++++|
T Consensus 262 ~d-~-~~~~r~~~~~~ 275 (275)
T PRK09328 262 KD-L-AGRDRVVLGRR 275 (275)
T ss_pred cC-C-CCCceEEEEEC
Confidence 11 2 36789998865
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.22 Score=53.40 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=71.1
Q ss_pred CEEEEECCCCcHHHHHHhcC--C-----------------------------------------CccccCChhhhhHHHH
Q 008748 157 RNVLDVGCGVASFGAYLLSH--D-----------------------------------------IIAMSLAPNDVHENQI 193 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~-----------------------------------------V~~vdis~~dls~a~i 193 (555)
..++|-=||+|.+....|-. + +.|+|+++.++..|.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak- 271 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK- 271 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH-
Confidence 57999999999988765532 1 559999999887666
Q ss_pred HHHHHcCCC--eEEEEeCCCCCCCCCCCccEEEecccccccccc------h----HHHHHHHHhhcCCCcEEEEEcCC
Q 008748 194 QFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR------D----GILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 194 ~~A~~rg~~--v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d------~----~~~L~el~RvLkPGG~lvis~P~ 259 (555)
..|+..|.. +.|.++|+..++-+-+.+|+|+|+- +|-.. . ..+.+.+.+.++--+.++|++..
T Consensus 272 ~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP---PYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e 346 (381)
T COG0116 272 ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP---PYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSE 346 (381)
T ss_pred HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC---CcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEccH
Confidence 455666654 8999999988865447899999863 23211 1 23556777888888888887754
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.013 Score=59.60 Aligned_cols=95 Identities=21% Similarity=0.153 Sum_probs=55.1
Q ss_pred eeEeeccCCcchhhhhccC--CCceEEEecccCC-CCchhHHhh----ccccc--hh-cccccCCCCCCCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKD--KDVWVMNVAPVRM-SARLKIIYD----RGLIG--TV-HDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~--~~~wvmnv~p~~~-~~~l~~i~~----rgl~g--~~-~~~ce~~~typrtydl~h~~~~ 470 (555)
.+|+|++||.|..+..+.. .+-. .|+=++. +..+...-+ .|+-. .. .|. +.++.-..+||+|+++.+
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~--~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTG--KVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EALPVADNSVDVIISNCV 155 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCC--EEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCCCCCCceeEEEEcCc
Confidence 3899999999875432221 1211 2333443 233443322 23211 01 122 223323469999998877
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
|... -+...++-|+=|+|||||.+++.|
T Consensus 156 ~~~~----~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 156 INLS----PDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred ccCC----CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 7522 135789999999999999999864
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.018 Score=57.31 Aligned_cols=117 Identities=20% Similarity=0.352 Sum_probs=72.5
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhH----Hhhcccc--chhc-ccccCCCCCCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKI----IYDRGLI--GTVH-DWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~----i~~rgl~--g~~~-~~ce~~~typrtydl~h~~~~~ 471 (555)
.+|+|++||.|.|+.+|... |-+ +|+-++.. ..+.. +-..|+- -+++ |+-+.+. +.+||+|-++--|
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy 164 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDA--RVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP--GGKFDLIVSNPPY 164 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc--CCceeEEEECCCC
Confidence 36999999999999998754 222 45545432 33332 2223441 1222 3323332 3689999876544
Q ss_pred cccc-----cCCCC-----------------hhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcCccc
Q 008748 472 SEIE-----ERGCS-----------------FEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDG 521 (555)
Q Consensus 472 s~~~-----~~~c~-----------------~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~w~~ 521 (555)
.... ..... ...++-++-|+|+|||.+++........++++++....++.
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~ 236 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFAD 236 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCc
Confidence 3110 00000 13567789999999999999877777788899998877764
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.05 Score=53.66 Aligned_cols=104 Identities=18% Similarity=0.248 Sum_probs=56.3
Q ss_pred ceeEeeccCCcchhhhhccCC-CceEEEecccCCCCchhHHhhccccchhcccccCCCCCCCccchhhccccccccccCC
Q 008748 400 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERG 478 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~~~l~~i~~rgl~g~~~~~ce~~~typrtydl~h~~~~~s~~~~~~ 478 (555)
--.|-|||||=+-.|+++.+. .|.-...|..... -+.-|= ...|-=.-+.|+ |--++|.+..
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~---Vtacdi----------a~vPL~~~svDv--~VfcLSLMGT-- 135 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPR---VTACDI----------ANVPLEDESVDV--AVFCLSLMGT-- 135 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S---EEEEESS-SSTT---EEES-T----------TS-S--TT-EEE--EEEES---SS--
T ss_pred CEEEEECCCchHHHHHhcccCceEEEeeccCCCCC---EEEecC----------ccCcCCCCceeE--EEEEhhhhCC--
Confidence 457999999999999998643 4555555544321 000000 001111246776 3456675444
Q ss_pred CChhhhhhhhcccccCCceEEEecchhHHHHHH---HHHhhcCccc
Q 008748 479 CSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIR---KFITALKWDG 521 (555)
Q Consensus 479 c~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~---~~~~~~~w~~ 521 (555)
+..+.+.|--|||||||.++|-+-..-+..++ +.++++..+.
T Consensus 136 -n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~ 180 (219)
T PF05148_consen 136 -NWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKL 180 (219)
T ss_dssp --HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEE
T ss_pred -CcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeE
Confidence 49999999999999999999987666655555 4455666766
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.059 Score=53.92 Aligned_cols=82 Identities=10% Similarity=0.052 Sum_probs=50.1
Q ss_pred EEEeCCCCC--CCCCCCccEEEecccc-c--c-----------cccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhH
Q 008748 205 LGVLGTKRL--PYPSRSFELAHCSRCR-I--D-----------WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR 268 (555)
Q Consensus 205 ~~~~d~~~L--p~~d~sFDlVv~s~~~-l--~-----------~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~ 268 (555)
+..+|..++ .++++++|+|+..--- + . +.+-....+.|+.|+|||||.+++.....
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~-------- 75 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN-------- 75 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc--------
Confidence 445554332 4667888888875210 0 0 00112458899999999999988643211
Q ss_pred HHHHHHHHHHHhcCcEEEEEeeceEEeecCC
Q 008748 269 RIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 299 (555)
Q Consensus 269 ~~~~~l~~l~~~~gw~vv~~~~~~~iw~KPl 299 (555)
....+...+++.||.+. ...+|.|+.
T Consensus 76 -~~~~~~~al~~~GF~l~----~~IiW~K~~ 101 (227)
T PRK13699 76 -RVDRFMAAWKNAGFSVV----GHLVFTKNY 101 (227)
T ss_pred -cHHHHHHHHHHCCCEEe----eEEEEECCC
Confidence 12345566788999865 445899874
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.024 Score=55.05 Aligned_cols=117 Identities=12% Similarity=0.205 Sum_probs=68.9
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhH----HhhccccchhcccccCC----CCCCC-ccchhhccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKI----IYDRGLIGTVHDWCESF----STYPR-TYDLLHAWK 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~----i~~rgl~g~~~~~ce~~----~typr-tydl~h~~~ 469 (555)
..|+|++||.|.|+.+|... |- .||+=++-. .-+.. +-..|+-.+..=-+... ..+|. ++|.++.+
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~--~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~- 94 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPD--KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN- 94 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCC--CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE-
Confidence 57999999999999888753 32 245555432 22222 22334421111111111 11343 88888754
Q ss_pred ccccc------ccCCCChhhhhhhhcccccCCceEEEe-cchhHHHHHHHHHhhcC-ccc
Q 008748 470 VFSEI------EERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALK-WDG 521 (555)
Q Consensus 470 ~~s~~------~~~~c~~~~~~~e~drilrp~g~~i~r-d~~~~~~~~~~~~~~~~-w~~ 521 (555)
|+.. .+++.....+|-++-|+|+|||.+++. |.....+.+.+.+...- |+.
T Consensus 95 -~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 95 -FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred -CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 2211 124566688999999999999999986 66656666666555432 543
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.055 Score=57.32 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=39.1
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC--------------------CCccccCChhhhhHHHHHHHHH-----cCCCeEE--E
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH--------------------DIIAMSLAPNDVHENQIQFALE-----RGIPSTL--G 206 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~--------------------~V~~vdis~~dls~a~i~~A~~-----rg~~v~~--~ 206 (555)
.+.-+|+|+||.+|..+..+.+. .|.--|+-..|.+.-....... ...++.. +
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 44568999999999877665531 1233455555553332211111 1223222 1
Q ss_pred EeCCCCCCCCCCCccEEEeccccccccc
Q 008748 207 VLGTKRLPYPSRSFELAHCSRCRIDWLQ 234 (555)
Q Consensus 207 ~~d~~~Lp~~d~sFDlVv~s~~~l~~~~ 234 (555)
-++...--||+++.|+++|++ ++||..
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~-alHWLS 121 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSY-ALHWLS 121 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES--TTB-S
T ss_pred CchhhhccCCCCceEEEEEec-hhhhcc
Confidence 233444448899999999888 599874
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.043 Score=60.29 Aligned_cols=86 Identities=19% Similarity=0.330 Sum_probs=56.8
Q ss_pred ceeeeCCCCCCCCc---cHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHH
Q 008748 117 EKINFPGGGTHFHD---GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHEN 191 (555)
Q Consensus 117 e~~~F~~~g~~f~~---~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a 191 (555)
-+|+|+.+. .|+. .++.....+.+.+.+. ....+||+-||||.++..++++ .|+|+++++.++..|
T Consensus 351 ltF~iSp~A-FFQ~Nt~~aevLys~i~e~~~l~--------~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA 421 (534)
T KOG2187|consen 351 LTFRISPGA-FFQTNTSAAEVLYSTIGEWAGLP--------ADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDA 421 (534)
T ss_pred eEEEECCch-hhccCcHHHHHHHHHHHHHhCCC--------CCcEEEEEeecCCceehhhhccccceeeeecChhhcchh
Confidence 456665443 3332 2333444455554432 2368999999999999999985 899999999998877
Q ss_pred HHHHHHHcCCCeEEEEeCCC
Q 008748 192 QIQFALERGIPSTLGVLGTK 211 (555)
Q Consensus 192 ~i~~A~~rg~~v~~~~~d~~ 211 (555)
..+.....-.++.|+++-++
T Consensus 422 ~~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 422 EKNAQINGISNATFIVGQAE 441 (534)
T ss_pred hhcchhcCccceeeeecchh
Confidence 75544333346788887443
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.045 Score=54.79 Aligned_cols=138 Identities=14% Similarity=0.257 Sum_probs=68.1
Q ss_pred cCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHH----hhc-cccchhcccccCC--CCCCCccchh
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKII----YDR-GLIGTVHDWCESF--STYPRTYDLL 465 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i----~~r-gl~g~~~~~ce~~--~typrtydl~ 465 (555)
+..+. .|||.+||.|++...|.+. + -=.|+-++.. .-|..+ -++ ++.-+..|-.++. ...+.++|.|
T Consensus 70 i~~g~--~VlD~G~G~G~~~~~la~~v~--~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 70 IKKGS--KVLYLGAASGTTVSHVSDIVE--EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred CCCCC--EEEEEccCCCHHHHHHHHhcC--CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence 45553 6999999999999888753 1 0023333332 222222 222 2333333433321 1123456664
Q ss_pred hccccccccccCCCChhhhhhhhcccccCCceEEEe------c----chhHHHHHHHHHhhcCccceecccccccccCCC
Q 008748 466 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR------D----KSSIINYIRKFITALKWDGWLSEVEPRIDALSS 535 (555)
Q Consensus 466 h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r------d----~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 535 (555)
|+..... =....+|-|+-|+|+|||.++|. | ......+..+.+..-..+. +...+ -.|+.
T Consensus 146 -----~~d~~~p-~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~-i~~~~--l~p~~- 215 (226)
T PRK04266 146 -----YQDVAQP-NQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEI-LEVVD--LEPYH- 215 (226)
T ss_pred -----EECCCCh-hHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeE-EEEEc--CCCCc-
Confidence 2211110 01123466999999999999992 2 2233334445565544544 12222 22332
Q ss_pred CCceEEEEEec
Q 008748 536 SEERVLIAKKK 546 (555)
Q Consensus 536 ~~~~~l~~~k~ 546 (555)
..+-.+|++|+
T Consensus 216 ~~h~~~v~~~~ 226 (226)
T PRK04266 216 KDHAAVVARKK 226 (226)
T ss_pred CCeEEEEEEcC
Confidence 24566666653
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.025 Score=46.34 Aligned_cols=95 Identities=22% Similarity=0.325 Sum_probs=57.3
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHh---hccc---cchh-cccccCCCCCCCccchhhccccccc
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY---DRGL---IGTV-HDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~---~rgl---~g~~-~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
+|+|++||.|+++..+...+ ...++-++.. +.+...- ..+. +=.+ .|+.+....-+.+||++.+++.+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 48999999999998887632 2233333322 2221111 1111 1111 2222222123568999999998873
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEe
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
... ....++-.+.+.|||||.+++.
T Consensus 79 ~~~---~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LVE---DLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhh---HHHHHHHHHHHHcCCCCEEEEE
Confidence 111 3678888889999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.019 Score=56.35 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=50.7
Q ss_pred eeEeeccCCcchhhhhccCC-----CceEEEecccCCCCchhHHhhccccc---hh-cccccCCCCCCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDRGLIG---TV-HDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-----~~wvmnv~p~~~~~~l~~i~~rgl~g---~~-~~~ce~~~typrtydl~h~~~~~ 471 (555)
..|+|++||.|.+++.|... .|.-+-+.|.-....-.-+...|+-+ ++ .|-.+.++. ..+||.|.++..+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~ 152 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVTAAA 152 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEccCc
Confidence 46999999999998776531 23333322221100001223345422 22 244444433 3689999877654
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
.. +-=|+-|.|+|||.+++-
T Consensus 153 ~~----------~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 153 ST----------IPSALVRQLKDGGVLVIP 172 (205)
T ss_pred ch----------hhHHHHHhcCcCcEEEEE
Confidence 32 223566899999999884
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.015 Score=66.12 Aligned_cols=101 Identities=15% Similarity=0.235 Sum_probs=60.3
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhc----cc-cchhcccccCCCC--CCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR----GL-IGTVHDWCESFST--YPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~r----gl-~g~~~~~ce~~~t--yprtydl~h~~~~~ 471 (555)
.+|+|++||.|.++.+|... |- .+|+-+|-+ +.|...-++ |. +-+.+.=+..++. =|.+||++..+.++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~--~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETED--KRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 57999999999998777532 21 345555543 334333222 11 1111111233332 25789999877654
Q ss_pred cccc------cC---CCChhhhhhhhcccccCCceEEEecc
Q 008748 472 SEIE------ER---GCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 472 s~~~------~~---~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
-.+. .. .-.+..+|-|+-|+|+|||.++|.|.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 3211 11 12467889999999999999999874
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.045 Score=52.11 Aligned_cols=68 Identities=22% Similarity=0.256 Sum_probs=44.3
Q ss_pred EEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCC--CCCCC-ccEEEec
Q 008748 158 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLP--YPSRS-FELAHCS 226 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp--~~d~s-FDlVv~s 226 (555)
.|+|+.||.|..+..+|.. .|+++|+++.-+.-++ ..|+--|. ++.++.+|..++. +.... ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~-hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAK-HNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH-HHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999985 6999999988775555 44444453 5889999954331 11122 8999974
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.039 Score=55.69 Aligned_cols=114 Identities=16% Similarity=0.244 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCC-CCchhHHhhccc----cc--hhcc
Q 008748 378 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL----IG--TVHD 450 (555)
Q Consensus 378 ~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~-~~~l~~i~~rgl----~g--~~~~ 450 (555)
..|++..-.- +. +. .=-+|+|..||+|=+|..+.+.-- --.|+-+|- ++-|.+--+|-- .+ ..+-
T Consensus 37 ~~Wr~~~i~~---~~--~~--~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~ 108 (238)
T COG2226 37 RLWRRALISL---LG--IK--PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVG 108 (238)
T ss_pred HHHHHHHHHh---hC--CC--CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEe
Confidence 6787755432 21 11 234799999999999999975321 334555553 366776665543 22 1233
Q ss_pred cccCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 451 WCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 451 ~ce~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
=-|.++.-..|||++=.+.-+-... ++.-.|=||=|+|+|||.+++=|.
T Consensus 109 dAe~LPf~D~sFD~vt~~fglrnv~----d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 109 DAENLPFPDNSFDAVTISFGLRNVT----DIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred chhhCCCCCCccCEEEeeehhhcCC----CHHHHHHHHHHhhcCCeEEEEEEc
Confidence 3467777778999988766554222 488999999999999998886543
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.052 Score=52.60 Aligned_cols=91 Identities=13% Similarity=0.205 Sum_probs=61.8
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHc-----CCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~r-----g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
..+.|+|+|+|.++...+.. +|++++.+|.-. ..|.+. ..+..++++|+....|. ..|+|+|-..-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a-----~~a~eN~~v~g~~n~evv~gDA~~y~fe--~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRA-----RLAEENLHVPGDVNWEVVVGDARDYDFE--NADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHH-----HHhhhcCCCCCCcceEEEeccccccccc--ccceeHHHHhh
Confidence 47999999999887666653 788888877543 333333 23578899999888883 57999985310
Q ss_pred ccc-ccchHHHHHHHHhhcCCCcEEE
Q 008748 230 IDW-LQRDGILLLELDRLLRPGGYFV 254 (555)
Q Consensus 230 l~~-~~d~~~~L~el~RvLkPGG~lv 254 (555)
-.. .+....++..+...||-.|.++
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCccc
Confidence 111 1222446777777888888877
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.025 Score=60.03 Aligned_cols=115 Identities=13% Similarity=0.040 Sum_probs=70.7
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhccc---cchhcccccCCCCCCCccchhhccccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDRGL---IGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 475 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~rgl---~g~~~~~ce~~~typrtydl~h~~~~~s~~~ 475 (555)
..|+|++||.|.++..|.+. +- -+|+=+|.. +.|...-++.- +-+.+.=.+.++.-+.+||++-+.+.+..+.
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 47999999999988777532 21 244444432 44444433310 1122222233343357999998877665322
Q ss_pred cCCCChhhhhhhhcccccCCceEEEecch-----------------hHHHHHHHHHhhcCccc
Q 008748 476 ERGCSFEDLLIEMDRMLRPEGFVIIRDKS-----------------SIINYIRKFITALKWDG 521 (555)
Q Consensus 476 ~~~c~~~~~~~e~drilrp~g~~i~rd~~-----------------~~~~~~~~~~~~~~w~~ 521 (555)
+...+|-|+-|+|+|||.+++-+.. ...+++.+++++..++.
T Consensus 193 ----d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~ 251 (340)
T PLN02490 193 ----DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKD 251 (340)
T ss_pred ----CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeE
Confidence 3567899999999999999875421 12466677777777764
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.064 Score=54.66 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCC
Q 008748 133 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT 210 (555)
Q Consensus 133 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~ 210 (555)
....+.+.+.+... +...|||||.|+|.++..|++. +++++++++.....-...+. ...++.++.+|+
T Consensus 16 ~~~~~~Iv~~~~~~--------~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~ 85 (262)
T PF00398_consen 16 PNIADKIVDALDLS--------EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDF 85 (262)
T ss_dssp HHHHHHHHHHHTCG--------TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-T
T ss_pred HHHHHHHHHhcCCC--------CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh--hcccceeeecch
Confidence 44566666666532 3468999999999999999864 68889888754422221111 346789999998
Q ss_pred CCCCCCC---CCccEEEecccccccccchHHHHHHHHhhcCC
Q 008748 211 KRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRP 249 (555)
Q Consensus 211 ~~Lp~~d---~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkP 249 (555)
..+.... +.-..|+++ +.| .-...++..+...-+.
T Consensus 86 l~~~~~~~~~~~~~~vv~N---lPy-~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 86 LKWDLYDLLKNQPLLVVGN---LPY-NISSPILRKLLELYRF 123 (262)
T ss_dssp TTSCGGGHCSSSEEEEEEE---ETG-TGHHHHHHHHHHHGGG
T ss_pred hccccHHhhcCCceEEEEE---ecc-cchHHHHHHHhhcccc
Confidence 8877553 334455543 444 2223456666553333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.029 Score=56.06 Aligned_cols=102 Identities=18% Similarity=0.256 Sum_probs=67.4
Q ss_pred ccCCCcceeEeeccCCcchhhhhccC-CCceEEEecccCCCCchhHHhh-ccccchhcccccCCCCCCCccchhhccccc
Q 008748 394 VAQKNTFRNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMSARLKIIYD-RGLIGTVHDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 394 ~~~~~~~rn~~dm~~~~g~faa~l~~-~~~wvmnv~p~~~~~~l~~i~~-rgl~g~~~~~ce~~~typrtydl~h~~~~~ 471 (555)
...+..++.|+|+++|.|.|++++.. .|-. .++-.+-|..+..+.+ -.+--+=||. |.++|. ||++...+++
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l--~~~v~Dlp~v~~~~~~~~rv~~~~gd~---f~~~P~-~D~~~l~~vL 168 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYPNL--RATVFDLPEVIEQAKEADRVEFVPGDF---FDPLPV-ADVYLLRHVL 168 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHSTTS--EEEEEE-HHHHCCHHHTTTEEEEES-T---TTCCSS-ESEEEEESSG
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCCCC--cceeeccHhhhhccccccccccccccH---Hhhhcc-ccceeeehhh
Confidence 56788999999999999999999963 3433 2333444433443333 1122223333 467778 9999999998
Q ss_pred cccccCCCChhhhhhhhcccccCC--ceEEEecc
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPE--GFVIIRDK 503 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~--g~~i~rd~ 503 (555)
-.+... ....||--+=+-|+|| |.++|-|.
T Consensus 169 h~~~d~--~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 169 HDWSDE--DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GGS-HH--HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hhcchH--HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 755433 3567888899999999 99998754
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.082 Score=54.09 Aligned_cols=105 Identities=14% Similarity=0.178 Sum_probs=55.3
Q ss_pred CCCEEEEECCCCc--HHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--CC----CCCcc
Q 008748 155 NIRNVLDVGCGVA--SFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YP----SRSFE 221 (555)
Q Consensus 155 ~~~~VLDIGCGtG--~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--~~----d~sFD 221 (555)
.++..||||||-- .....+++ .+|.-+|..|.-+..++.-.+........++.+|+.+.. +. .+-+|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 5689999999954 34444543 378899999976654443222222112778888865421 00 11223
Q ss_pred ----EEEecccccccccc---hHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 222 ----LAHCSRCRIDWLQR---DGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 222 ----lVv~s~~~l~~~~d---~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
+.+....++||++| +..++..+...|.||.+|+|+...
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 22223347899865 466999999999999999998754
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.039 Score=51.05 Aligned_cols=96 Identities=20% Similarity=0.317 Sum_probs=60.6
Q ss_pred eeEeeccCCcchhhhhccC-C--CceEEEecccCCC-CchhHHhh----cccc--chh-cccccCCCC-CCCccchhhcc
Q 008748 401 RNVMDMNSNLGGFAAALKD-K--DVWVMNVAPVRMS-ARLKIIYD----RGLI--GTV-HDWCESFST-YPRTYDLLHAW 468 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~-~--~~wvmnv~p~~~~-~~l~~i~~----rgl~--g~~-~~~ce~~~t-yprtydl~h~~ 468 (555)
-+|+|++||.|.++-.|.+ . ..= |+=+|-. .-+...-. .|+- =.+ .|+=+ ++. |+..||+|.+.
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~---i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAK---IIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSE---EEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCE---EEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence 3799999999999888872 1 222 3333332 33333222 3442 111 22222 221 45889999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCceEEEecch
Q 008748 469 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 504 (555)
Q Consensus 469 ~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~ 504 (555)
++|.. -.....+|-+|=|.|+|+|.+++.+..
T Consensus 81 ~~l~~----~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHH----FPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGG----TSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhh----ccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 88842 234678899999999999999998776
|
... |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.031 Score=58.00 Aligned_cols=103 Identities=14% Similarity=0.284 Sum_probs=62.1
Q ss_pred cCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCCCchhH----HhhccccchhcccccCC--CCCCCccchhhc
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKI----IYDRGLIGTVHDWCESF--STYPRTYDLLHA 467 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~~~l~~----i~~rgl~g~~~~~ce~~--~typrtydl~h~ 467 (555)
+.....+.|+|++||.|.++.++.+. |-. +|+-.+-+..+.. +-+.|+-+-++-.+..| ..+| .+|++-.
T Consensus 145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~--~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~ 221 (306)
T TIGR02716 145 AKLDGVKKMIDVGGGIGDISAAMLKHFPEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLF 221 (306)
T ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHCCCC--EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEe
Confidence 34456789999999999999888654 432 3444444444443 34446543222222222 1345 3788655
Q ss_pred cccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 468 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 468 ~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
.+++-.+... ....+|-++-|.|+|||.++|-|
T Consensus 222 ~~~lh~~~~~--~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 222 CRILYSANEQ--LSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred EhhhhcCChH--HHHHHHHHHHHhcCCCCEEEEEE
Confidence 5544322111 23568889999999999999875
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.11 Score=51.12 Aligned_cols=100 Identities=21% Similarity=0.252 Sum_probs=52.7
Q ss_pred EEEEECCCCcHHHHHHhcC----CCccccCChh--hhhHHHHHHHHHcC-----CCeEEEEeC-CCCCC--CCCCCccEE
Q 008748 158 NVLDVGCGVASFGAYLLSH----DIIAMSLAPN--DVHENQIQFALERG-----IPSTLGVLG-TKRLP--YPSRSFELA 223 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~~----~V~~vdis~~--dls~a~i~~A~~rg-----~~v~~~~~d-~~~Lp--~~d~sFDlV 223 (555)
.+.|||||.|.+...|+.. -|+|++|--. |.-++.++..+... .++.+...+ ..-+| |..++.+-.
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskm 142 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKM 142 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccc
Confidence 5999999999999999864 5777776432 23344444443221 122222222 12222 222222211
Q ss_pred Eecccccccccc-------hHHHHHHHHhhcCCCcEEEEEc
Q 008748 224 HCSRCRIDWLQR-------DGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 224 v~s~~~l~~~~d-------~~~~L~el~RvLkPGG~lvis~ 257 (555)
+..+---|+-.. ...++.+..-+|++||.++.++
T Consensus 143 ff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 143 FFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred eeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 111101111110 1237899999999999999754
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.036 Score=52.84 Aligned_cols=142 Identities=18% Similarity=0.258 Sum_probs=68.2
Q ss_pred cCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-----CchhHHhhcccc---chhcccccCCCCCCCccchhh
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-----ARLKIIYDRGLI---GTVHDWCESFSTYPRTYDLLH 466 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-----~~l~~i~~rgl~---g~~~~~ce~~~typrtydl~h 466 (555)
+..+.-.+|+|.+|+-|||...+.........|+-+|-. ..+..| +|=| .+...-.+.++.=.+.+|||-
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceec
Confidence 455578999999999999999998765223334433321 111111 2211 111122222221126899999
Q ss_pred cccccccccc--CC--CChhhhhh---hhcccccCCceEEEe-----cchhHHHHHHHHHhhcCccceecccccccccCC
Q 008748 467 AWKVFSEIEE--RG--CSFEDLLI---EMDRMLRPEGFVIIR-----DKSSIINYIRKFITALKWDGWLSEVEPRIDALS 534 (555)
Q Consensus 467 ~~~~~s~~~~--~~--c~~~~~~~---e~drilrp~g~~i~r-----d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 534 (555)
+|.-+..... .. -.+.-++- =+-..|+|||.+|+. +..+++..++..-...++- .+... ..
T Consensus 97 ~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~------Kp~~s-r~ 169 (181)
T PF01728_consen 97 SDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIV------KPPSS-RS 169 (181)
T ss_dssp E-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEE------E-TTS-BT
T ss_pred cccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEE------ECcCC-CC
Confidence 9985441110 00 00111121 223559999988864 3336666666654444332 22211 22
Q ss_pred CCCceEEEEEe
Q 008748 535 SSEERVLIAKK 545 (555)
Q Consensus 535 ~~~~~~l~~~k 545 (555)
.+.|..|||.+
T Consensus 170 ~s~E~Ylv~~~ 180 (181)
T PF01728_consen 170 ESSEEYLVCRG 180 (181)
T ss_dssp TCBEEEEESEE
T ss_pred CccEEEEEEcC
Confidence 46788888864
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.065 Score=53.08 Aligned_cols=117 Identities=17% Similarity=0.234 Sum_probs=66.1
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----ccc--cchhcccccCCCCCCCccchhhccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGL--IGTVHDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl--~g~~~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
-.|+|++||.|.++..+..... -+|+-++-. ..+...-+ .|+ .-+-.|+.+.+. ..+||+|.++--|..
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSNPPYVP 113 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEECCCCCC
Confidence 4699999999999887765432 144444432 34432221 233 112235555433 358999998743331
Q ss_pred ccc-----------------CCCChhhhhhhhcccccCCceEEEe-cchhHHHHHHHHHhhcCccc
Q 008748 474 IEE-----------------RGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALKWDG 521 (555)
Q Consensus 474 ~~~-----------------~~c~~~~~~~e~drilrp~g~~i~r-d~~~~~~~~~~~~~~~~w~~ 521 (555)
... ....+..++-++-|+|+|||.+++- .+...+.++...+++-.|++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~ 179 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDA 179 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCe
Confidence 100 0012456777899999999999972 22223445555555545544
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.49 Score=46.32 Aligned_cols=136 Identities=13% Similarity=0.086 Sum_probs=71.5
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhh-----hH-HHHH-HHHHcC-CCeEEEEeCCCCCC-------CC
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDV-----HE-NQIQ-FALERG-IPSTLGVLGTKRLP-------YP 216 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dl-----s~-a~i~-~A~~rg-~~v~~~~~d~~~Lp-------~~ 216 (555)
...+|+|+=-|.|+|++.++.. ......+.+.+. .+ ...+ .+++.. .+....-...-.++ .+
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~~~ 127 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDLVP 127 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccccc
Confidence 3468999999999999998863 112223333332 11 1111 121111 11111111111222 12
Q ss_pred CCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCC----CChhhHH--HHHHHHHHHHhcCcEEEEEee
Q 008748 217 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA----HDPENRR--IWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 217 d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~----~~~e~~~--~~~~l~~l~~~~gw~vv~~~~ 290 (555)
..++|.++-.. .+| ......+..++++.|||||.+++....... .+..... .-..+....+..||++..+..
T Consensus 128 ~~~~yhdmh~k-~i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~aeS~ 205 (238)
T COG4798 128 TAQNYHDMHNK-NIH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAESE 205 (238)
T ss_pred cchhhhhhhcc-ccC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeeeeh
Confidence 23444444222 233 344577999999999999999997633211 1111111 113567788999999887665
Q ss_pred ce
Q 008748 291 QT 292 (555)
Q Consensus 291 ~~ 292 (555)
..
T Consensus 206 il 207 (238)
T COG4798 206 IL 207 (238)
T ss_pred hh
Confidence 43
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.048 Score=53.55 Aligned_cols=96 Identities=23% Similarity=0.292 Sum_probs=56.1
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhc----cc---cchh-cccccCCCCCCCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR----GL---IGTV-HDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~r----gl---~g~~-~~~ce~~~typrtydl~h~~~~ 470 (555)
..|+|++||.|.++..+... +- .-+|+-++.. +.+...-++ |+ +-++ .|..+ ++.=+.+||+|.++.+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGK-TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEA-LPFPDNSFDAVTIAFG 130 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccccc-CCCCCCCccEEEEecc
Confidence 46999999999998776432 10 0123333322 222222221 11 1111 12221 2222468999988766
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+- ...+...+|-++-++|+|||.+++-+
T Consensus 131 l~----~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 131 LR----NVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred cc----cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 54 22457889999999999999998754
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.12 Score=53.18 Aligned_cols=136 Identities=17% Similarity=0.273 Sum_probs=82.4
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhh----ccc---c-chhcccccCCCCCCCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYD----RGL---I-GTVHDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~----rgl---~-g~~~~~ce~~~typrtydl~h~~~~ 470 (555)
..|+|++||.|.++.+|... |-+ +|+-++.. ..|.+.-+ .|+ + =+-.||.+.+.. ..||+|=++-=
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~--~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNA--EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECCC
Confidence 47999999999999888753 322 45555543 44544333 233 1 123577776532 37898865411
Q ss_pred ccc------c--ccCCC-------------ChhhhhhhhcccccCCceEEEecchhHHHHHHHHHh-hcCccceeccccc
Q 008748 471 FSE------I--EERGC-------------SFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFIT-ALKWDGWLSEVEP 528 (555)
Q Consensus 471 ~s~------~--~~~~c-------------~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~-~~~w~~~~~~~~~ 528 (555)
+.. + ..+.. .+..|+-+.-+.|+|||++++--...--..+++++. ...|.. +.+.
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~-~~~~-- 268 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYD-VENG-- 268 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCce-eEEe--
Confidence 110 0 00000 244678889999999999998766666777888776 456753 1111
Q ss_pred ccccCCCCCceEEEEEec
Q 008748 529 RIDALSSSEERVLIAKKK 546 (555)
Q Consensus 529 ~~~~~~~~~~~~l~~~k~ 546 (555)
.+ + .+.++++++++.
T Consensus 269 -~D-~-~g~~R~~~~~~~ 283 (284)
T TIGR00536 269 -RD-L-NGKERVVLGFYH 283 (284)
T ss_pred -cC-C-CCCceEEEEEec
Confidence 11 2 467999998753
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.036 Score=54.68 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=47.5
Q ss_pred eeEeeccCCcchhhhhccCC-----CceEEEecccCCCCchhHH----hhccccchhcccccCCCCCC--Cccchhhccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKII----YDRGLIGTVHDWCESFSTYP--RTYDLLHAWK 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-----~~wvmnv~p~~~~~~l~~i----~~rgl~g~~~~~ce~~~typ--rtydl~h~~~ 469 (555)
..|+|++||+|.+++.|... .|.-+-+.| .-+.+. -.-|+-.+---....+..++ ..||+|+...
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~----~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP----ELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 57999999999999776532 233332222 222221 11232111111122233332 5799998665
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
.+. .+.-++-+.|+|||.+++-
T Consensus 154 ~~~----------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 154 AGP----------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred Ccc----------cchHHHHHhhCCCcEEEEE
Confidence 433 3334555689999999884
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.034 Score=54.79 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=49.8
Q ss_pred eeEeeccCCcchhhhhccCC--C-ceEEEecccCCC-CchhH----Hhhccc---cchhcccccCCCCCCCccchhhccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK--D-VWVMNVAPVRMS-ARLKI----IYDRGL---IGTVHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~--~-~wvmnv~p~~~~-~~l~~----i~~rgl---~g~~~~~ce~~~typrtydl~h~~~ 469 (555)
..|+|++||.|.+++.|.+. + . .|+-++-. .-+.. +-+.|+ .=+..|..+.+.. ...||+|+.++
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g---~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~ 154 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDG---LVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVTA 154 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEcC
Confidence 47999999999999988653 1 1 13333322 22222 223343 1122344443333 25899998665
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEE
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVII 500 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~ 500 (555)
... .+.-++-+.|+|||.+|+
T Consensus 155 ~~~----------~~~~~~~~~L~~gG~lv~ 175 (215)
T TIGR00080 155 AGP----------KIPEALIDQLKEGGILVM 175 (215)
T ss_pred Ccc----------cccHHHHHhcCcCcEEEE
Confidence 333 233345678999999987
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=93.63 E-value=1.7 Score=43.93 Aligned_cols=132 Identities=15% Similarity=0.126 Sum_probs=74.1
Q ss_pred CCEEEEECCCCc-HHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCC-CCCC-CCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVA-SFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK-RLPY-PSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG-~~a~~La~--~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~-~Lp~-~d~sFDlVv~s~~~l 230 (555)
+++||=||=+-- +++..|.. ++|+.+|++..-+. ...+.|.+.+.++.....|.. .||- -.++||++++--
T Consensus 45 gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~-fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP--- 120 (243)
T PF01861_consen 45 GKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLD-FINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP--- 120 (243)
T ss_dssp T-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHH-HHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE-----
T ss_pred CCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHH-HHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC---
Confidence 468999997665 45555543 47899999887653 333667778888999999864 3442 137899999642
Q ss_pred cccc-chHHHHHHHHhhcCCCc-EEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeeceEEe
Q 008748 231 DWLQ-RDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIW 295 (555)
Q Consensus 231 ~~~~-d~~~~L~el~RvLkPGG-~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~~~iw 295 (555)
.|.. -...++......||..| ..+++. .+.+.....|.++++.+.++|+.+.........|
T Consensus 121 PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~----~~~~~s~~~~~~~Q~~l~~~gl~i~dii~~Fn~Y 183 (243)
T PF01861_consen 121 PYTPEGLKLFLSRGIEALKGEGCAGYFGF----THKEASPDKWLEVQRFLLEMGLVITDIIPDFNRY 183 (243)
T ss_dssp -SSHHHHHHHHHHHHHTB-STT-EEEEEE-----TTT--HHHHHHHHHHHHTS--EEEEEEEEEEEB
T ss_pred CCCHHHHHHHHHHHHHHhCCCCceEEEEE----ecCcCcHHHHHHHHHHHHHCCcCHHHHHhhhccc
Confidence 2332 23558888889998766 433322 1222345689999999999999888766655433
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.099 Score=47.44 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=35.6
Q ss_pred EEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeC
Q 008748 158 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG 209 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d 209 (555)
++||||||.|.++..++.. .++++|.++......+.+++.....++.+....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~a 56 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAA 56 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEee
Confidence 4899999999999888753 588999988877655544433322335544443
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.25 Score=51.50 Aligned_cols=94 Identities=16% Similarity=0.269 Sum_probs=51.7
Q ss_pred cHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHh----cCCCccccCChhhhhHHHHHHHHHcCC--CeE
Q 008748 131 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGI--PST 204 (555)
Q Consensus 131 ~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La----~~~V~~vdis~~dls~a~i~~A~~rg~--~v~ 204 (555)
++-.|+..+.+++......++ ..-++||||+|...+-..|. .-.++|.|+++..+..|+....+..+. .+.
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~---~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~ 157 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIP---EKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIE 157 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS------EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEE
T ss_pred hhHHHHHHHHHHhhccccccc---cceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceE
Confidence 445788888888875432211 14589999999885544443 237889999999888887666555233 455
Q ss_pred EEEeCC-----CCCCCCCCCccEEEecc
Q 008748 205 LGVLGT-----KRLPYPSRSFELAHCSR 227 (555)
Q Consensus 205 ~~~~d~-----~~Lp~~d~sFDlVv~s~ 227 (555)
+..... ..+..++..||+.+|+-
T Consensus 158 l~~~~~~~~i~~~i~~~~e~~dftmCNP 185 (299)
T PF05971_consen 158 LRKQKNPDNIFDGIIQPNERFDFTMCNP 185 (299)
T ss_dssp EEE--ST-SSTTTSTT--S-EEEEEE--
T ss_pred EEEcCCccccchhhhcccceeeEEecCC
Confidence 554431 11223346799999875
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.41 Score=49.41 Aligned_cols=101 Identities=12% Similarity=0.204 Sum_probs=57.4
Q ss_pred CCCEEEEECCCCcHHHHHHh-cC-----CCccccCChhhhhHHHHHHHH---HcCCCeEEEEeCCCCCCCCCCCccEEEe
Q 008748 155 NIRNVLDVGCGVASFGAYLL-SH-----DIIAMSLAPNDVHENQIQFAL---ERGIPSTLGVLGTKRLPYPSRSFELAHC 225 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La-~~-----~V~~vdis~~dls~a~i~~A~---~rg~~v~~~~~d~~~Lp~~d~sFDlVv~ 225 (555)
.+++|+=||||.=-++..+. +. .|+++|+++.....+. +... ..+..+.|..+|....+..-..||+|+.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~-~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELAR-RLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHH-HHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 35699999999776555443 32 3668888887765554 2222 2356788988887776655568999996
Q ss_pred cccccccc-cchHHHHHHHHhhcCCCcEEEEEc
Q 008748 226 SRCRIDWL-QRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 226 s~~~l~~~-~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
+.. .... ++...++..+.+.++||..+++-.
T Consensus 199 Aal-Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 199 AAL-VGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -TT--S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhh-cccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 652 3222 255779999999999999999854
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.22 Score=50.81 Aligned_cols=139 Identities=11% Similarity=0.131 Sum_probs=73.7
Q ss_pred CcceeEeeccCCcchhhhhccCC-CceEEEecccCC-CCchhHHhhc-cccc------hh-cccccCCCCCCCccchhhc
Q 008748 398 NTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR-GLIG------TV-HDWCESFSTYPRTYDLLHA 467 (555)
Q Consensus 398 ~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~-~~~l~~i~~r-gl~g------~~-~~~ce~~~typrtydl~h~ 467 (555)
..-++|+|+++|.|.++..|... |. +.|+-++- +..+.+.-+. ++.+ +. .|--+-+...|.+||+|=.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 45678999999999999877542 31 23444443 3344333332 1111 11 1222223344678999965
Q ss_pred cccccccc-cCCCChhhhhhhhcccccCCceEEE---ecchhHHHHHHHHHhhcCccceecccccccccCCCCCceEEEE
Q 008748 468 WKVFSEIE-ERGCSFEDLLIEMDRMLRPEGFVII---RDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIA 543 (555)
Q Consensus 468 ~~~~s~~~-~~~c~~~~~~~e~drilrp~g~~i~---rd~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~ 543 (555)
+ .|.... ........++-++=++|+|||.+++ ..+...-..++.+...+.-.+ ..+..+ .....|+++
T Consensus 143 D-~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~--~~~~~~-----~~~N~v~~a 214 (262)
T PRK04457 143 D-GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRV--LELPAE-----SHGNVAVFA 214 (262)
T ss_pred e-CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcE--EEEecC-----CCccEEEEE
Confidence 4 343111 1112246888999999999999997 233333333444444433222 111111 224578889
Q ss_pred Eec
Q 008748 544 KKK 546 (555)
Q Consensus 544 ~k~ 546 (555)
.|.
T Consensus 215 ~~~ 217 (262)
T PRK04457 215 FKS 217 (262)
T ss_pred ECC
Confidence 873
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.036 Score=55.26 Aligned_cols=101 Identities=22% Similarity=0.302 Sum_probs=76.6
Q ss_pred ccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCC-CCchhHHhhccccc-hhcccccCCC--CCCCccchhhccc
Q 008748 394 VAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIG-TVHDWCESFS--TYPRTYDLLHAWK 469 (555)
Q Consensus 394 ~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~-~~~l~~i~~rgl~g-~~~~~ce~~~--typrtydl~h~~~ 469 (555)
..+.+.+|.++|.+||+|=++-+|.+.- =-..=++- .|-|-+.+|+|+-- .||-=-..|. +=++-+|||-|..
T Consensus 120 ~~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaD 196 (287)
T COG4976 120 KADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAAD 196 (287)
T ss_pred hccCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhh
Confidence 4566779999999999999999998720 11233343 38899999999732 2333333355 5578999999999
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
+|+-+. .++.|+.=.++.|.|||.++++
T Consensus 197 Vl~YlG----~Le~~~~~aa~~L~~gGlfaFS 224 (287)
T COG4976 197 VLPYLG----ALEGLFAGAAGLLAPGGLFAFS 224 (287)
T ss_pred HHHhhc----chhhHHHHHHHhcCCCceEEEE
Confidence 999443 4999999999999999999986
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.017 Score=49.99 Aligned_cols=93 Identities=16% Similarity=0.151 Sum_probs=38.4
Q ss_pred EEECCCCcHHHHHHhcC-------CCccccCChhhhhHHHHHHHHHc--CCCeEEEEeCCCCC-C-CCCCCccEEEeccc
Q 008748 160 LDVGCGVASFGAYLLSH-------DIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRL-P-YPSRSFELAHCSRC 228 (555)
Q Consensus 160 LDIGCGtG~~a~~La~~-------~V~~vdis~~dls~a~i~~A~~r--g~~v~~~~~d~~~L-p-~~d~sFDlVv~s~~ 228 (555)
||||+..|..+..+++. .++++|..+. .+...+..++. ...+++..++.... + ++.++||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence 68999999888877752 4778887764 11222222222 23578888875432 1 3357899999543
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEEEE
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lvis 256 (555)
-|-.+.....+..+.+.|+|||.+++-
T Consensus 78 -~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 -DHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred -CCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 332234455788899999999999873
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.069 Score=55.87 Aligned_cols=112 Identities=19% Similarity=0.275 Sum_probs=66.6
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHH----hhccc---cch-hcccccCCCCCCCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKII----YDRGL---IGT-VHDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i----~~rgl---~g~-~~~~ce~~~typrtydl~h~~~~ 470 (555)
.+|+|++||.|.++.+|... |. .+|+-++-. ..+.+. -..|+ |-+ -.|+-+.++ +.+||+|-++-=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCC
Confidence 47999999999999988643 43 346666643 445443 23354 222 235545443 358999987622
Q ss_pred ccc------c---cc-----------CCC-ChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhc
Q 008748 471 FSE------I---EE-----------RGC-SFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITAL 517 (555)
Q Consensus 471 ~s~------~---~~-----------~~c-~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~ 517 (555)
+.. + .. +.. -...|+-+.-+.|+|||.+++--... ..+++++....
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~ 277 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV 277 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence 110 0 00 000 12477888999999999999853333 34577776643
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.051 Score=56.17 Aligned_cols=125 Identities=22% Similarity=0.279 Sum_probs=73.7
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCC-C-CCCCCccEEEe--
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL-P-YPSRSFELAHC-- 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~L-p-~~d~sFDlVv~-- 225 (555)
..+|||+.+|.|+=+.++++ ..+++.|++..-+..-. ..+.+.|. .+.....|...+ + .....||.|+.
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~-~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDa 164 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLK-ENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDA 164 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHH-HHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEEC
T ss_pred cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHH-HHHHhcCCceEEEEeeccccccccccccccchhhcCC
Confidence 45899999999988777775 25778888776553333 23333454 445555665444 1 22346999996
Q ss_pred --ccc-ccccccc----------------hHHHHHHHHhhc----CCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhc-
Q 008748 226 --SRC-RIDWLQR----------------DGILLLELDRLL----RPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM- 281 (555)
Q Consensus 226 --s~~-~l~~~~d----------------~~~~L~el~RvL----kPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~- 281 (555)
+.. ++.-.++ ...+|..+.+.| ||||+++.++-.... .| .-..++.++++.
T Consensus 165 PCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~--eE---NE~vV~~fl~~~~ 239 (283)
T PF01189_consen 165 PCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP--EE---NEEVVEKFLKRHP 239 (283)
T ss_dssp SCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG--GG---THHHHHHHHHHST
T ss_pred CccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH--HH---HHHHHHHHHHhCC
Confidence 211 1111111 134899999999 999999998744211 11 122455566655
Q ss_pred CcEEE
Q 008748 282 CWKIV 286 (555)
Q Consensus 282 gw~vv 286 (555)
.|+++
T Consensus 240 ~~~l~ 244 (283)
T PF01189_consen 240 DFELV 244 (283)
T ss_dssp SEEEE
T ss_pred CcEEE
Confidence 55554
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.17 Score=44.18 Aligned_cols=90 Identities=16% Similarity=0.142 Sum_probs=53.6
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhH----Hhhccccch--h-cc--cccCCCCCCCccchhhccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKI----IYDRGLIGT--V-HD--WCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~----i~~rgl~g~--~-~~--~ce~~~typrtydl~h~~~ 469 (555)
..|+|++||.|.++..+... |- .+|+-++-. ..+.. +...|+-.+ . .| |+.. .-+.+||.+=..+
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~v~~~~ 96 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE--DSLPEPDRVFIGG 96 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh--hhcCCCCEEEECC
Confidence 48999999999999888653 32 345555543 33332 122233111 1 11 2221 2235788874433
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
.++ .+..++-++-|.|+|||++++-
T Consensus 97 ~~~-------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 97 SGG-------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred cch-------hHHHHHHHHHHHcCCCCEEEEE
Confidence 222 2467899999999999999973
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.06 Score=54.07 Aligned_cols=114 Identities=20% Similarity=0.100 Sum_probs=77.7
Q ss_pred CCcceeEeeccCCcchhhhhcc-CCCceEEEecccCCC-CchhHHhhccccchhcccc--------cCCCCCCCccchhh
Q 008748 397 KNTFRNVMDMNSNLGGFAAALK-DKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWC--------ESFSTYPRTYDLLH 466 (555)
Q Consensus 397 ~~~~rn~~dm~~~~g~faa~l~-~~~~wvmnv~p~~~~-~~l~~i~~rgl~g~~~~~c--------e~~~typrtydl~h 466 (555)
...-|-+.|.+||.| +||..+ +. -=||+-+|-. ..|.+ ..-+.--+||+=- +.|..=+.+-|||-
T Consensus 31 ~~~h~~a~DvG~G~G-qa~~~iae~---~k~VIatD~s~~mL~~-a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~ 105 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNG-QAARGIAEH---YKEVIATDVSEAMLKV-AKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLIT 105 (261)
T ss_pred CCCcceEEEeccCCC-cchHHHHHh---hhhheeecCCHHHHHH-hhcCCCcccccCCccccccccccccCCCcceeeeh
Confidence 345568999999999 776654 22 1278888765 66763 3444444555443 33334478999988
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCceEE----EecchhHHHHHHHHHhhcCcc
Q 008748 467 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVI----IRDKSSIINYIRKFITALKWD 520 (555)
Q Consensus 467 ~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i----~rd~~~~~~~~~~~~~~~~w~ 520 (555)
|.-.|- =|+++..+-++-|+|||.|-+| .+|+.-+.-++-++..++.|+
T Consensus 106 ~Aqa~H-----WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 106 AAQAVH-----WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hhhhHH-----hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 766554 3779999999999999999332 466666666777777777775
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.5 Score=50.00 Aligned_cols=103 Identities=18% Similarity=0.152 Sum_probs=55.0
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCC-----eEEEEeCCCCCCCCCCCccEEE
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP-----STLGVLGTKRLPYPSRSFELAH 224 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~-----v~~~~~d~~~Lp~~d~sFDlVv 224 (555)
++++|||+|.|.|.-+.++-+. .++.++.++. +.+---..+..-+.. ..=+..|-..+|.. ..|++|+
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~-lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a-d~ytl~i 190 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPA-LRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA-DLYTLAI 190 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHH-HHHHHHHHHhhcccccCCCCCCccchhccCCCcc-ceeehhh
Confidence 4567999999999765554432 2333333331 111111122211111 11122232333433 4688888
Q ss_pred ecccccccccch---HHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 225 CSRCRIDWLQRD---GILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 225 ~s~~~l~~~~d~---~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
...-.++- ... ...++.+-.++.|||.|+|+.++.
T Consensus 191 ~~~eLl~d-~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 191 VLDELLPD-GNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhhhccc-cCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 66543432 222 227888889999999999998774
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.079 Score=53.77 Aligned_cols=120 Identities=15% Similarity=0.160 Sum_probs=71.7
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCC-CCchhHHhh----ccccchhcccccCCCC-CCCccchhhccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD----RGLIGTVHDWCESFST-YPRTYDLLHAWKVFSE 473 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~-~~~l~~i~~----rgl~g~~~~~ce~~~t-yprtydl~h~~~~~s~ 473 (555)
.+|+|++||.|.++-+|... +- .+|+-++. +..+...-+ -|+--+-.|+.+.++. ....||+|=++=-+..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~--~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDG--IELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 36999999999999877532 22 13444443 233332211 1321122355444321 2346888866543321
Q ss_pred c------------ccCCCC----------hhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcCccce
Q 008748 474 I------------EERGCS----------FEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGW 522 (555)
Q Consensus 474 ~------------~~~~c~----------~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~w~~~ 522 (555)
. +..+.. +..|+-...++|+|||.+++-=..+-..+|..++....|+..
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~ 236 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIAR 236 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCce
Confidence 0 000111 347777888999999999987666667889999998888874
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.15 Score=55.12 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=70.2
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-----CchhHHhhccccc---hhccc---ccCCCCCCCccchhhcc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-----ARLKIIYDRGLIG---TVHDW---CESFSTYPRTYDLLHAW 468 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-----~~l~~i~~rgl~g---~~~~~---ce~~~typrtydl~h~~ 468 (555)
..++|+|||.|.|+.+|... |-+ ||+=++-. ..+.-+-.+||-. +..|- .+.|+ +.++|.|+..
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~--~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~--~~s~D~I~ln 199 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNK--LFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP--SNSVEKIFVH 199 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCC--CEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC--CCceeEEEEe
Confidence 46999999999999999743 322 55555532 1222345556522 12232 23343 3689999864
Q ss_pred ccccccc-c---CCCChhhhhhhhcccccCCceEEEe-cchhHHHHHHHHHhhc-Ccc
Q 008748 469 KVFSEIE-E---RGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITAL-KWD 520 (555)
Q Consensus 469 ~~~s~~~-~---~~c~~~~~~~e~drilrp~g~~i~r-d~~~~~~~~~~~~~~~-~w~ 520 (555)
|..-+ + +|=-...+|-|+=|+|+|||.+.++ |..+..+.+.+.+... +++
T Consensus 200 --FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~ 255 (390)
T PRK14121 200 --FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAK 255 (390)
T ss_pred --CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCce
Confidence 43211 1 2223368999999999999999986 6666666666665544 444
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.2 Score=52.23 Aligned_cols=128 Identities=19% Similarity=0.259 Sum_probs=66.5
Q ss_pred eeEeeccCCcc--hhhhhccCC-CceEEEecccCCCCchhHHhhccccchhc-ccccCCCCCCCccchhhcccccccccc
Q 008748 401 RNVMDMNSNLG--GFAAALKDK-DVWVMNVAPVRMSARLKIIYDRGLIGTVH-DWCESFSTYPRTYDLLHAWKVFSEIEE 476 (555)
Q Consensus 401 rn~~dm~~~~g--~faa~l~~~-~~wvmnv~p~~~~~~l~~i~~rgl~g~~~-~~ce~~~typrtydl~h~~~~~s~~~~ 476 (555)
..|+|++||+| +.||+++.- .|.-.-.=|..-.++.--+-.-|+-.-+. ...+.+.. ..||||=|+=+...
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~--~~~dlvvANI~~~v--- 237 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVE--GKFDLVVANILADV--- 237 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCC--S-EEEEEEES-HHH---
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEeccccc--ccCCEEEECCCHHH---
Confidence 48999999999 456666542 34333322221112222222333322110 01222232 79999987766552
Q ss_pred CCCChhhhhhhhcccccCCceEEEecch-hHHHHHHHHHhhcCccceecccccccccCCCCCceEEEEEec
Q 008748 477 RGCSFEDLLIEMDRMLRPEGFVIIRDKS-SIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKK 546 (555)
Q Consensus 477 ~~c~~~~~~~e~drilrp~g~~i~rd~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k~ 546 (555)
+..++=++.+.|+|||++|++=-. +-.+.|.+..+. .|+..... + .+.---|+++|+
T Consensus 238 ----L~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~---~-----~~~W~~l~~~Kk 295 (295)
T PF06325_consen 238 ----LLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEER---E-----EGEWVALVFKKK 295 (295)
T ss_dssp ----HHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEE---E-----ETTEEEEEEEE-
T ss_pred ----HHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEE---E-----ECCEEEEEEEeC
Confidence 456777789999999999976111 113444455555 66652111 1 245667777775
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.079 Score=51.18 Aligned_cols=87 Identities=20% Similarity=0.256 Sum_probs=52.7
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhccccchhcccccCCCCC-CCccchhhccccccccccCCC
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWCESFSTY-PRTYDLLHAWKVFSEIEERGC 479 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl~g~~~~~ce~~~ty-prtydl~h~~~~~s~~~~~~c 479 (555)
+|+|++||.|.++.+|.+..-. +++-++.. ..+.....+|+--+..|..+.++.+ +++||+|-+.+.|..+.
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~--~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~---- 89 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQV--RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR---- 89 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCC--cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc----
Confidence 7999999999999988653211 22333322 3344444566433333443333334 46999999998876432
Q ss_pred ChhhhhhhhcccccC
Q 008748 480 SFEDLLIEMDRMLRP 494 (555)
Q Consensus 480 ~~~~~~~e~drilrp 494 (555)
+...+|-||-|++++
T Consensus 90 d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 NPEEILDEMLRVGRH 104 (194)
T ss_pred CHHHHHHHHHHhCCe
Confidence 266677777666554
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.42 Score=47.87 Aligned_cols=96 Identities=16% Similarity=0.293 Sum_probs=61.4
Q ss_pred ccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCC--e
Q 008748 130 DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIP--S 203 (555)
Q Consensus 130 ~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~--v 203 (555)
++...|++.+++++....+.+. ++.-++||||.|.-.+--.+-. -+.+|.|+++..++.++..+....+.. +
T Consensus 55 PgRAdYih~laDLL~s~~g~~~--~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I 132 (292)
T COG3129 55 PGRADYIHHLADLLASTSGQIP--GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAI 132 (292)
T ss_pred CChhHHHHHHHHHHHhcCCCCC--cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhhe
Confidence 5778899999999987665544 3456899999887654333322 267788888888877776555443332 2
Q ss_pred EEEEe-CCC----CCCCCCCCccEEEecc
Q 008748 204 TLGVL-GTK----RLPYPSRSFELAHCSR 227 (555)
Q Consensus 204 ~~~~~-d~~----~Lp~~d~sFDlVv~s~ 227 (555)
.+... |.. .+--..+.||++.|+-
T Consensus 133 ~lr~qk~~~~if~giig~nE~yd~tlCNP 161 (292)
T COG3129 133 RLRRQKDSDAIFNGIIGKNERYDATLCNP 161 (292)
T ss_pred eEEeccCccccccccccccceeeeEecCC
Confidence 33322 211 1112256899999986
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.15 Score=50.00 Aligned_cols=87 Identities=16% Similarity=0.170 Sum_probs=48.9
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----ccccc--hhcccccCCCCCC--Cccchhhcccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGLIG--TVHDWCESFSTYP--RTYDLLHAWKV 470 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl~g--~~~~~ce~~~typ--rtydl~h~~~~ 470 (555)
-.+|+|++||.|.+++.|...- - .|+-++.. +-+...-+ -|+-. +.+. ..+.++| .+||+|..+..
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~-~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~--d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLV-R--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHG--DGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHh-C--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEEC--CcccCCCcCCCcCEEEEccC
Confidence 3579999999999988765431 1 34444433 22222211 13311 1111 1223333 58999887654
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
+. .+.-++-+.|+|||.+++-
T Consensus 154 ~~----------~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 154 AP----------EIPRALLEQLKEGGILVAP 174 (212)
T ss_pred ch----------hhhHHHHHhcCCCcEEEEE
Confidence 43 2233456899999999874
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.21 Score=51.60 Aligned_cols=115 Identities=19% Similarity=0.300 Sum_probs=68.2
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHh----hcccc---c-hhcccccCCCCCCCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIY----DRGLI---G-TVHDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~----~rgl~---g-~~~~~ce~~~typrtydl~h~~~~ 470 (555)
.+|+|++||.|.++.+|... |-+ +|+-++-. ..|.+.- ..|+- - +..|+-+.++ +.+||+|=++-=
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~--~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NPP 198 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEA--EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSNPP 198 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEECCC
Confidence 47999999999999998753 322 45555543 4444332 23542 1 2234434432 347999887521
Q ss_pred ccc------cc--------------cCCC-ChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcCcc
Q 008748 471 FSE------IE--------------ERGC-SFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWD 520 (555)
Q Consensus 471 ~s~------~~--------------~~~c-~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~w~ 520 (555)
+.. +. .+.. ....|+-+.-+.|+|||.+++.-.... +++++++....|.
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~ 268 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFT 268 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCc
Confidence 110 00 0000 124678889999999999998644433 6888888765443
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.44 Score=51.96 Aligned_cols=155 Identities=15% Similarity=0.179 Sum_probs=88.6
Q ss_pred HhHhhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccC-CCceEEEecccCC-CCchhHHhh----ccc-c-c
Q 008748 375 EDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRM-SARLKIIYD----RGL-I-G 446 (555)
Q Consensus 375 ~d~~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~-~~~wvmnv~p~~~-~~~l~~i~~----rgl-~-g 446 (555)
.||+.+.+.+-.. + ..+ .+|+|++||.|.++.+|.. .|- .+|+-+|. +..|.+.-+ .|+ + =
T Consensus 236 peTE~LVe~aL~~---l----~~~--~rVLDLGcGSG~IaiaLA~~~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~f 304 (423)
T PRK14966 236 PETEHLVEAVLAR---L----PEN--GRVWDLGTGSGAVAVTVALERPD--AFVRASDISPPALETARKNAADLGARVEF 304 (423)
T ss_pred ccHHHHHHHhhhc---c----CCC--CEEEEEeChhhHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 4566665555332 2 222 2799999999999987753 232 24455554 244443322 232 1 1
Q ss_pred hhcccccCCCCCCCccchhhcccccccccc------------------CCCC---hhhhhhhhcccccCCceEEEecchh
Q 008748 447 TVHDWCESFSTYPRTYDLLHAWKVFSEIEE------------------RGCS---FEDLLIEMDRMLRPEGFVIIRDKSS 505 (555)
Q Consensus 447 ~~~~~ce~~~typrtydl~h~~~~~s~~~~------------------~~c~---~~~~~~e~drilrp~g~~i~rd~~~ 505 (555)
+-.|+.+....-..+||+|-++-=+..... ..-. +..|+-+.-+.|+|||++++-=..+
T Consensus 305 i~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~ 384 (423)
T PRK14966 305 AHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD 384 (423)
T ss_pred EEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc
Confidence 224555431111236999887553321000 0001 2356667778999999999865556
Q ss_pred HHHHHHHHHhhcCccceecccccccccCCCCCceEEEEEec
Q 008748 506 IINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKK 546 (555)
Q Consensus 506 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k~ 546 (555)
--+.+++++....|+.- ... .+ + .+.++++++++.
T Consensus 385 Q~e~V~~ll~~~Gf~~v-~v~---kD-l-~G~dR~v~~~~~ 419 (423)
T PRK14966 385 QGAAVRGVLAENGFSGV-ETL---PD-L-AGLDRVTLGKYM 419 (423)
T ss_pred HHHHHHHHHHHCCCcEE-EEE---Ec-C-CCCcEEEEEEEh
Confidence 67889999988888641 121 11 2 468999998753
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.44 Score=49.19 Aligned_cols=82 Identities=17% Similarity=0.162 Sum_probs=48.2
Q ss_pred EEEEeCCCCC--CCCCCCccEEEecccc-c--c------------cccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChh
Q 008748 204 TLGVLGTKRL--PYPSRSFELAHCSRCR-I--D------------WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE 266 (555)
Q Consensus 204 ~~~~~d~~~L--p~~d~sFDlVv~s~~~-l--~------------~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e 266 (555)
.+..+|...+ .+++++||+|++.--. + . |..-...++.++.|+|||||.+++......
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~----- 84 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTEN----- 84 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchh-----
Confidence 4556665442 3567889999974210 0 0 111124589999999999999998643211
Q ss_pred hHHHHHHHHHHHHhcCcEEEEEeeceEEeecCC
Q 008748 267 NRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 299 (555)
Q Consensus 267 ~~~~~~~l~~l~~~~gw~vv~~~~~~~iw~KPl 299 (555)
... ..++.+.+|... ...+|+|+.
T Consensus 85 ----~~~-~~~~~~~~f~~~----~~iiW~k~~ 108 (284)
T PRK11524 85 ----MPF-IDLYCRKLFTIK----SRIVWSYDS 108 (284)
T ss_pred ----hhH-HHHHHhcCcceE----EEEEEEeCC
Confidence 111 233445677543 446899863
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.1 Score=49.46 Aligned_cols=112 Identities=19% Similarity=0.257 Sum_probs=65.5
Q ss_pred ceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHH----hhccc---cchhcccccCCCCCCCccchhhcccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKII----YDRGL---IGTVHDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i----~~rgl---~g~~~~~ce~~~typrtydl~h~~~~ 470 (555)
-.+|+|++||+|-.+.+|... |-.. |+-++-. +-+... -.-|+ --+.+|+.+.+. +..||+|=++-=
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~--v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP 107 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAK--VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNPP 107 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEE--EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE---
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCE--EEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEccc
Confidence 456999999999888877643 4333 3333432 333322 22333 234567777666 589999876543
Q ss_pred cccccc-CCCChhhhhhhhcccccCCceE--EEecchhHHHHHHHHHh
Q 008748 471 FSEIEE-RGCSFEDLLIEMDRMLRPEGFV--IIRDKSSIINYIRKFIT 515 (555)
Q Consensus 471 ~s~~~~-~~c~~~~~~~e~drilrp~g~~--i~rd~~~~~~~~~~~~~ 515 (555)
|..... ....+..++-+-=++|+|||.+ ++......-..++++..
T Consensus 108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred hhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 331111 1123678888999999999977 45655555444555444
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=90.73 E-value=0.59 Score=43.41 Aligned_cols=108 Identities=15% Similarity=0.125 Sum_probs=60.2
Q ss_pred CccccCChhhhhHHHHHHHHHcC-CCeEEEEeCCCCCC--CCCCCccEEEeccccccccc-----ch---HHHHHHHHhh
Q 008748 178 IIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLP--YPSRSFELAHCSRCRIDWLQ-----RD---GILLLELDRL 246 (555)
Q Consensus 178 V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~d~~~Lp--~~d~sFDlVv~s~~~l~~~~-----d~---~~~L~el~Rv 246 (555)
|.++||-...+............ .++.++..+=+++. .+.+.+|+|+.+...|+-.+ .+ -..++.+.++
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~l 81 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALEL 81 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHh
Confidence 56788877777655544433322 24777776644443 23358999997644333221 11 3378999999
Q ss_pred cCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHh---cCcEEEEE
Q 008748 247 LRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS---MCWKIVSK 288 (555)
Q Consensus 247 LkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~---~gw~vv~~ 288 (555)
|+|||.++++.=. ..+...++.+.+.+.++. ..|.+...
T Consensus 82 L~~gG~i~iv~Y~---GH~gG~eE~~av~~~~~~L~~~~~~V~~~ 123 (140)
T PF06962_consen 82 LKPGGIITIVVYP---GHPGGKEESEAVEEFLASLDQKEFNVLKY 123 (140)
T ss_dssp EEEEEEEEEEE-----STCHHHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred hccCCEEEEEEeC---CCCCCHHHHHHHHHHHHhCCcceEEEEEE
Confidence 9999999987622 223444555666666655 45665543
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=90.56 E-value=0.018 Score=49.41 Aligned_cols=92 Identities=21% Similarity=0.269 Sum_probs=55.3
Q ss_pred EeeccCCcchhhhhccCCC--ceEEEecccCC-CCchhHHhhcc----c-cchhcccccCCCCCCCccchhhcccc-ccc
Q 008748 403 VMDMNSNLGGFAAALKDKD--VWVMNVAPVRM-SARLKIIYDRG----L-IGTVHDWCESFSTYPRTYDLLHAWKV-FSE 473 (555)
Q Consensus 403 ~~dm~~~~g~faa~l~~~~--~wvmnv~p~~~-~~~l~~i~~rg----l-~g~~~~~ce~~~typrtydl~h~~~~-~s~ 473 (555)
|+|++||.|.+..+|.+.= -=-..++-+|- +..|....++. + +=.++.=++.++..-.+||++=+.++ |..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999998887520 00035555663 36666666555 2 11111112223333459999988665 554
Q ss_pred cccCCCChhhhhhhhcccccCCc
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEG 496 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g 496 (555)
+.. =.++.++=+|=++|||||
T Consensus 81 ~~~--~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSP--EELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSH--HHHHHHHHHHHHTEEEEE
T ss_pred CCH--HHHHHHHHHHHHHhCCCC
Confidence 332 247899999999999998
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=90.41 E-value=0.3 Score=47.92 Aligned_cols=99 Identities=13% Similarity=0.199 Sum_probs=58.9
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cccchhcccccCCCCCCCccchhhcccccccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEI 474 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl~g~~~~~ce~~~typrtydl~h~~~~~s~~ 474 (555)
-.+|+|++||.|.|+.+|.+... .|+-++.. +-+...-++ |+-...+-....+..-+.+||++-+.++|...
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcC
Confidence 46899999999999998875432 24444433 334433222 22111111122244445789999988877532
Q ss_pred ccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 475 EERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 475 ~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
.. -.+..++-++-|++++++.+.+...
T Consensus 141 ~~--~~~~~~l~~l~~~~~~~~~i~~~~~ 167 (230)
T PRK07580 141 PQ--EDAARMLAHLASLTRGSLIFTFAPY 167 (230)
T ss_pred CH--HHHHHHHHHHHhhcCCeEEEEECCc
Confidence 21 2467788888888876666655443
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.31 Score=47.84 Aligned_cols=94 Identities=17% Similarity=0.238 Sum_probs=59.8
Q ss_pred ceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhccc-cchh-cccccCCCCCCCccchhhccccccccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDRGL-IGTV-HDWCESFSTYPRTYDLLHAWKVFSEIE 475 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~rgl-~g~~-~~~ce~~~typrtydl~h~~~~~s~~~ 475 (555)
-..|+|.+||.|.++.+|... +- .+|+-++-. +-+...-++.- +-+. .|-.++|+ +++||+|-+.++|.++.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~--~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFK--DNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCC--CCCEEEEEECChhhhCC
Confidence 356999999999999998754 31 245555533 44444433210 1122 23333332 46999999999988653
Q ss_pred cCCCChhhhhhhhcccccCCceEEEe
Q 008748 476 ERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 476 ~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
. =.+..++-||.|++ +++++|-
T Consensus 120 p--~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 120 P--DNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred H--HHHHHHHHHHHhhc--CcEEEEE
Confidence 1 24678889999998 5677774
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=90.24 E-value=0.57 Score=45.25 Aligned_cols=109 Identities=13% Similarity=0.124 Sum_probs=57.2
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCC-CCchhHHh----hcccc--chhc-ccccCCCCCCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIY----DRGLI--GTVH-DWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~-~~~l~~i~----~rgl~--g~~~-~~ce~~~typrtydl~h~~~~~ 471 (555)
..|+|++||.|.++..+... +- -.|+-++- +..+...- +.|+- =+.+ |--+.+...+-.+|.++.++
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~--~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-- 117 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPK--GRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-- 117 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC--
Confidence 47999999999998766421 21 12333443 22332221 12331 1111 11111111111234443221
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEec-chhHHHHHHHHHhhcCc
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKW 519 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~rd-~~~~~~~~~~~~~~~~w 519 (555)
...+..++-++-|+|+|||.+++-. +.+.+.++.+.++.+++
T Consensus 118 ------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~ 160 (196)
T PRK07402 118 ------GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQA 160 (196)
T ss_pred ------CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCC
Confidence 1357899999999999999998764 34445556666665543
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.23 E-value=0.91 Score=46.91 Aligned_cols=154 Identities=18% Similarity=0.259 Sum_probs=92.8
Q ss_pred hHhHhhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCC-CCchhH----Hhhccc---
Q 008748 374 HEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKI----IYDRGL--- 444 (555)
Q Consensus 374 ~~d~~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~-~~~l~~----i~~rgl--- 444 (555)
..||+.+-+.+- ..+. .... +|+||++|+|--|.+|... |. .+|+-+|- +.-|.+ +-.-||
T Consensus 93 r~dTe~Lve~~l---~~~~---~~~~--~ilDlGTGSG~iai~la~~~~~--~~V~a~Dis~~Al~~A~~Na~~~~l~~~ 162 (280)
T COG2890 93 RPDTELLVEAAL---ALLL---QLDK--RILDLGTGSGAIAIALAKEGPD--AEVIAVDISPDALALARENAERNGLVRV 162 (280)
T ss_pred CCchHHHHHHHH---Hhhh---hcCC--cEEEecCChHHHHHHHHhhCcC--CeEEEEECCHHHHHHHHHHHHHcCCccE
Confidence 367888877765 1121 1122 9999999999999999743 44 45666663 345543 233353
Q ss_pred cchhcccccCCCCCCCccchhhccccccc------------------cccCCCC---hhhhhhhhcccccCCceEEEecc
Q 008748 445 IGTVHDWCESFSTYPRTYDLLHAWKVFSE------------------IEERGCS---FEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 445 ~g~~~~~ce~~~typrtydl~h~~~~~s~------------------~~~~~c~---~~~~~~e~drilrp~g~~i~rd~ 503 (555)
+-+..||=+..+ -+||+|=++==.-. +...... +..|+-+..++|+|||++++.-.
T Consensus 163 ~~~~~dlf~~~~---~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 163 LVVQSDLFEPLR---GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred EEEeeecccccC---CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 233335555544 48888753321100 0111122 33678889999999999999988
Q ss_pred hhHHHHHHHHHhhcCccceecccccccccCCCCCceEEEEEe
Q 008748 504 SSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKK 545 (555)
Q Consensus 504 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k 545 (555)
..-.++|+++.....+-..+.. +.+ -.+.++++++++
T Consensus 240 ~~q~~~v~~~~~~~~~~~~v~~--~~d---~~g~~rv~~~~~ 276 (280)
T COG2890 240 LTQGEAVKALFEDTGFFEIVET--LKD---LFGRDRVVLAKL 276 (280)
T ss_pred CCcHHHHHHHHHhcCCceEEEE--Eec---CCCceEEEEEEe
Confidence 7788899999998885111111 111 135677776654
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.12 E-value=0.88 Score=49.25 Aligned_cols=105 Identities=19% Similarity=0.254 Sum_probs=63.1
Q ss_pred CCCCEEEEECCCCcHHHHHHhc----C-CCccccCChhhhhHHHHHHHHHcCCC-eEEEEeCCCCCC---CCCCCccEEE
Q 008748 154 GNIRNVLDVGCGVASFGAYLLS----H-DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLP---YPSRSFELAH 224 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~----~-~V~~vdis~~dls~a~i~~A~~rg~~-v~~~~~d~~~Lp---~~d~sFDlVv 224 (555)
..+.+|||+.+-.|.=+.++|. . -|.+.|.+..-+..-. +.+.+.|.. ......|...+| ++. +||-|+
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~-~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLK-ANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHH-HHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 4457999999999965544443 2 4556665554332222 333444544 445556666555 554 899988
Q ss_pred e----cccccc-----------------cccchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 225 C----SRCRID-----------------WLQRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 225 ~----s~~~l~-----------------~~~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
- +...+- +..-..++|.....++++||+|+.++-..
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 3 321010 11112458888899999999999987554
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=89.99 E-value=0.29 Score=48.04 Aligned_cols=99 Identities=13% Similarity=0.161 Sum_probs=60.9
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhcccc-ch---hcccccCCCCCCCccchhhcccccccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLI-GT---VHDWCESFSTYPRTYDLLHAWKVFSEI 474 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl~-g~---~~~~ce~~~typrtydl~h~~~~~s~~ 474 (555)
-..|+|++||.|.|+..|.+... .|+=++.. +.+....+|.-- +. ..=.+..+..-|.+||+|=+..++...
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~ 132 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHY 132 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhC
Confidence 46899999999999999987532 45555543 555555444210 00 000111222234789988766665422
Q ss_pred ccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 475 EERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 475 ~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
. .-.+..++-++.|+++|++++.+-..
T Consensus 133 ~--~~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 133 P--ASDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred C--HHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 1 12467789999999998888877543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=89.94 E-value=0.11 Score=50.79 Aligned_cols=93 Identities=24% Similarity=0.424 Sum_probs=59.5
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC----Cchh-HHhhcccc--chhcccccCCCCCCCccchhhcccccccc
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS----ARLK-IIYDRGLI--GTVHDWCESFSTYPRTYDLLHAWKVFSEI 474 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~----~~l~-~i~~rgl~--g~~~~~ce~~~typrtydl~h~~~~~s~~ 474 (555)
.++|++||-|.=|-.|.++-. +|.-+|.. ..|. ++-.+||- ....|. +.+ .+|..||+|-+..+|-.+
T Consensus 33 ~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl-~~~-~~~~~yD~I~st~v~~fL 107 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLDIRTRVADL-NDF-DFPEEYDFIVSTVVFMFL 107 (192)
T ss_dssp EEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BG-CCB-S-TTTEEEEEEESSGGGS
T ss_pred cEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCceeEEEEecc-hhc-cccCCcCEEEEEEEeccC
Confidence 699999999998887765432 45555433 2333 44557764 222332 223 357899999987777644
Q ss_pred ccCCCChhhhhhhhcccccCCceEEEe
Q 008748 475 EERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 475 ~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
.. =.+..|+--|-.-|+|||+++|-
T Consensus 108 ~~--~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 108 QR--ELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp -G--GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CH--HHHHHHHHHHHhhcCCcEEEEEE
Confidence 32 34678889999999999999883
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=89.80 E-value=0.19 Score=55.12 Aligned_cols=99 Identities=16% Similarity=0.296 Sum_probs=55.2
Q ss_pred eeEeeccCCcchhhhhccCC--CceEEEecccCCC-CchhHHhh----ccccc---hhcccccCCCCCCCccchhhc---
Q 008748 401 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS-ARLKIIYD----RGLIG---TVHDWCESFSTYPRTYDLLHA--- 467 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~~-~~l~~i~~----rgl~g---~~~~~ce~~~typrtydl~h~--- 467 (555)
.+|+||+||.|+++.+|.+. +- ..|+-++-. +.+..+-+ .|+-. +-.|..+....++.+||+|=.
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~--~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 329 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNT--GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAP 329 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCC
Confidence 57999999999998877542 11 134444432 44443322 24321 223443333345578998743
Q ss_pred ---ccccccc-----ccCCCCh-------hhhhhhhcccccCCceEEEe
Q 008748 468 ---WKVFSEI-----EERGCSF-------EDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 468 ---~~~~s~~-----~~~~c~~-------~~~~~e~drilrp~g~~i~r 501 (555)
.|++... ....-.+ ..||-+.=|+|+|||.+++.
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 3333310 0000011 35788889999999999965
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=89.71 E-value=0.4 Score=52.40 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=59.9
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHh---hc-cccchh--cccccCC--CC--CCCccchhhcc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIY---DR-GLIGTV--HDWCESF--ST--YPRTYDLLHAW 468 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~---~r-gl~g~~--~~~ce~~--~t--yprtydl~h~~ 468 (555)
.+|+||+||.||++++|... + --.|+-++-. ..|..+- +| |+-... ++ ...+ +. -+.+||.|-.+
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~--~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~-~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP--QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKD-GDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec-cccccccccccccccCEEEEc
Confidence 58999999999999887642 2 1134444432 4444332 22 432001 11 1111 11 24579998743
Q ss_pred ------cccccccc-CCC-C----------hhhhhhhhcccccCCceEEEe-------cchhHHHHHH
Q 008748 469 ------KVFSEIEE-RGC-S----------FEDLLIEMDRMLRPEGFVIIR-------DKSSIINYIR 511 (555)
Q Consensus 469 ------~~~s~~~~-~~c-~----------~~~~~~e~drilrp~g~~i~r-------d~~~~~~~~~ 511 (555)
|++...-. +-. . -..||-++=|+|||||.+++. ++.+++..+-
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l 384 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFL 384 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHH
Confidence 45431100 000 0 146888999999999999987 6666665443
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=89.56 E-value=4.2 Score=38.78 Aligned_cols=118 Identities=18% Similarity=0.213 Sum_probs=70.2
Q ss_pred ECCCCcHHHHHHhcC-----CCccccCChhhhhH-------HHHHHHHHcCCCeEEEEeCCCCCC----CCCCCccEEEe
Q 008748 162 VGCGVASFGAYLLSH-----DIIAMSLAPNDVHE-------NQIQFALERGIPSTLGVLGTKRLP----YPSRSFELAHC 225 (555)
Q Consensus 162 IGCGtG~~a~~La~~-----~V~~vdis~~dls~-------a~i~~A~~rg~~v~~~~~d~~~Lp----~~d~sFDlVv~ 225 (555)
||=|.=+|+..|+.. ++++..+...+.-. ..++..++.|..+.+ -.|+..+. ...+.||.|+.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~-~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLH-GVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCcccc-CCCCCcccccccccCCcCCEEEE
Confidence 555666888888763 45555544332111 112222334444443 34554443 35678999997
Q ss_pred ccccccccc------c---------hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 226 SRCRIDWLQ------R---------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 226 s~~~l~~~~------d---------~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
++- |.. + ...+++.+.++|+++|.+.|+......+ ..|. ++.+++..|+.++...
T Consensus 82 NFP---H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py-----~~W~-i~~lA~~~gl~l~~~~ 151 (166)
T PF10354_consen 82 NFP---HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY-----DSWN-IEELAAEAGLVLVRKV 151 (166)
T ss_pred eCC---CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC-----cccc-HHHHHHhcCCEEEEEe
Confidence 652 222 1 1337899999999999999987543211 2343 5689999999887553
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=89.03 E-value=0.46 Score=45.12 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=45.3
Q ss_pred CCccEEEeccccccccc-----ch------HHHHHHHHhhcCCCcEEEEEcCCCCCCChhh-HHHHHHHHHHHHhcCcEE
Q 008748 218 RSFELAHCSRCRIDWLQ-----RD------GILLLELDRLLRPGGYFVYSSPEAYAHDPEN-RRIWNAMYDLLKSMCWKI 285 (555)
Q Consensus 218 ~sFDlVv~s~~~l~~~~-----d~------~~~L~el~RvLkPGG~lvis~P~~~~~~~e~-~~~~~~l~~l~~~~gw~v 285 (555)
++||.+.|.. +++|.. |+ ...+.++.++|||||.|+++.|-.-.....+ .++|..+.-.+--.||+.
T Consensus 62 ~~fD~~as~~-siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~ 140 (177)
T PF03269_consen 62 GSFDFAASFS-SIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEW 140 (177)
T ss_pred ccchhhheec-hhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEE
Confidence 6799888655 566541 11 4478999999999999999998643222221 234444444445568887
Q ss_pred EEE
Q 008748 286 VSK 288 (555)
Q Consensus 286 v~~ 288 (555)
+..
T Consensus 141 i~t 143 (177)
T PF03269_consen 141 IDT 143 (177)
T ss_pred Eee
Confidence 753
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=88.90 E-value=0.41 Score=49.78 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=58.4
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc------cc--cchhcccccCCCCCCCcc----c-hhh
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR------GL--IGTVHDWCESFSTYPRTY----D-LLH 466 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r------gl--~g~~~~~ce~~~typrty----d-l~h 466 (555)
.+|+|++||.|.++..|.+.-.=..+|+++|-+ .-|....++ ++ .++-.|-++.++ +|..+ + ++.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~-~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA-LPPEPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh-hhcccccCCeEEEE
Confidence 479999999999988886431002468888865 555555443 11 234455555432 23333 2 232
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 467 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 467 ~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
..+.|..+. .=+...+|-++=+.|+|||.++|.
T Consensus 144 ~gs~~~~~~--~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 144 PGSTIGNFT--PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred ecccccCCC--HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 222222111 112557899999999999999963
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.80 E-value=1.1 Score=49.90 Aligned_cols=127 Identities=13% Similarity=0.108 Sum_probs=78.0
Q ss_pred CCEEEEECCCCcHHHHHHhc------C--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLS------H--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~------~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~ 227 (555)
...|+=+|+|-|-+.....+ + ++.+++-.|.++.--+-..-..-...++++..|+..++.|..+.|++++ .
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-E 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-E 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-H
Confidence 55788999999977655443 2 5667777776654332211222245789999999998866678999985 3
Q ss_pred cccccccch--HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCc
Q 008748 228 CRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 283 (555)
Q Consensus 228 ~~l~~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw 283 (555)
.+-.+.++. .+.|..+.+.|||.|..+=..-..|-..--....|.++.+.-....|
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~v~a~~~~~~f 504 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQEVKATNDPNAF 504 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCCCceEccchhhhhhcccccHHHHHHHHhcCCcccc
Confidence 233333332 45899999999999876622211111112223466776666553333
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=88.49 E-value=0.46 Score=50.01 Aligned_cols=112 Identities=13% Similarity=0.146 Sum_probs=59.7
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-CchhH----Hhhccccc--hh-cccccCCCCCCCccchhhccccccc
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRGLIG--TV-HDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~----i~~rgl~g--~~-~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
.|+|..||.|+|+.++.... .+|+=++.. ..+.. +-.-|+-. ++ .|-. .++.-+.+||+|=.+-=|..
T Consensus 185 ~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~-~l~~~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 185 RVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDAT-KLPLSSESVDAIATDPPYGR 260 (329)
T ss_pred EEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchh-cCCcccCCCCEEEECCCCcC
Confidence 69999999999954332211 234444432 22221 11224433 11 2221 22222358898877533321
Q ss_pred ---cccC--CCChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcCc
Q 008748 474 ---IEER--GCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKW 519 (555)
Q Consensus 474 ---~~~~--~c~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~w 519 (555)
.... ..-...+|-|+-|+|+|||++++--..+ ..+++.++.-.|
T Consensus 261 ~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 261 STTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred cccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 1110 0224689999999999999887643222 144556777777
|
This family is found exclusively in the Archaea. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=88.35 E-value=0.33 Score=50.17 Aligned_cols=96 Identities=21% Similarity=0.429 Sum_probs=68.4
Q ss_pred cCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCC-Cchh----HHhhcccc----chhcccccCCCCCCCccch
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLK----IIYDRGLI----GTVHDWCESFSTYPRTYDL 464 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~----~i~~rgl~----g~~~~~ce~~~typrtydl 464 (555)
|+.|+ .|||++||-||.+-.+... .| ||+-++-+ +++. -|-++||- =..+||-+-=.+ ||=
T Consensus 70 L~~G~--~lLDiGCGWG~l~~~aA~~y~v---~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~----fDr 140 (283)
T COG2230 70 LKPGM--TLLDIGCGWGGLAIYAAEEYGV---TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP----FDR 140 (283)
T ss_pred CCCCC--EEEEeCCChhHHHHHHHHHcCC---EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc----cce
Confidence 55554 5999999999987666533 45 45555533 5555 47889997 457788655433 777
Q ss_pred hhccccccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 465 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 465 ~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
|=+-+.|-..... +..+.+-=+.++|+|||.+++.
T Consensus 141 IvSvgmfEhvg~~--~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 141 IVSVGMFEHVGKE--NYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred eeehhhHHHhCcc--cHHHHHHHHHhhcCCCceEEEE
Confidence 7777777755432 4788888899999999999865
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.30 E-value=1.1 Score=47.48 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=57.7
Q ss_pred CCEEEEECCC-CcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCG-VASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCG-tG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|+=+|+| .|..+..++.. +|+++| .++...+.|++.|....+...|.....--.+.||+|+..- .
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~-----~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv-~-- 238 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAIT-----RSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV-G-- 238 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEe-----CChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC-C--
Confidence 4578888877 33666666653 555554 4556667788777654443223322322123499998433 2
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
...+....+.||+||.++++.-.
T Consensus 239 -----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 -----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----hhhHHHHHHHHhcCCEEEEECCC
Confidence 24688899999999999997643
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=88.23 E-value=1.1 Score=44.34 Aligned_cols=99 Identities=11% Similarity=0.034 Sum_probs=50.3
Q ss_pred CCEEEEECCCCcHHHHHHhc--------CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC-------C-CCCC
Q 008748 156 IRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-------Y-PSRS 219 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~--------~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp-------~-~d~s 219 (555)
+.+|+++|.-.|..+..+|+ +.|.++|+........+++. .-....+++.++|..... . ....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~-hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES-HPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh-ccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 46899999999876655542 47899999554432222111 011357899999865432 1 1122
Q ss_pred ccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 220 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 220 FDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
-.+|+ -. +-|...+.-..|+-...++++|+++++-+
T Consensus 112 ~vlVi-lD-s~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 112 PVLVI-LD-SSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp SEEEE-ES-S----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred ceEEE-EC-CCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 33444 22 34444555667888999999999999843
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=87.89 E-value=0.31 Score=49.89 Aligned_cols=103 Identities=11% Similarity=0.133 Sum_probs=54.2
Q ss_pred CCcceeEeeccCCcchhhhhccCCC-ceEEEecccCCC-CchhHHhhc-----c-----ccchh-cccccCCCCCCCccc
Q 008748 397 KNTFRNVMDMNSNLGGFAAALKDKD-VWVMNVAPVRMS-ARLKIIYDR-----G-----LIGTV-HDWCESFSTYPRTYD 463 (555)
Q Consensus 397 ~~~~rn~~dm~~~~g~faa~l~~~~-~wvmnv~p~~~~-~~l~~i~~r-----g-----l~g~~-~~~ce~~~typrtyd 463 (555)
..+-++|+++++|.|+++..+.+.+ + .+|+=++.. +.+...-+. | -+-+. .|--+-....+++||
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~~--~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yD 147 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKSV--EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFD 147 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCCc--ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCcc
Confidence 4455699999999999998876554 3 233333322 222211110 0 00011 121111123367999
Q ss_pred hhhccccccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 464 LLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 464 l~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
+|=.+..........--....+-.+-|+|+|||.+++.
T Consensus 148 vIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 148 VIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 98655432100000011245566788999999999985
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=87.68 E-value=0.28 Score=47.91 Aligned_cols=112 Identities=16% Similarity=0.248 Sum_probs=71.0
Q ss_pred eEeeccCCcchhhhhccCC-CceEEEecccCCC-----CchhHHhhccccchhcccccCCCCC-----CCccchhhcccc
Q 008748 402 NVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-----ARLKIIYDRGLIGTVHDWCESFSTY-----PRTYDLLHAWKV 470 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-----~~l~~i~~rgl~g~~~~~ce~~~ty-----prtydl~h~~~~ 470 (555)
-++|++||.|.|.++|... |= .|++=++-. ..+.-+..+||-.+.-=.|.+.... |-+.|-||- .
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd--~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i--~ 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD--INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYI--N 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT--SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEE--E
T ss_pred eEEEecCCCCHHHHHHHHHCCC--CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEE--e
Confidence 7999999999999998522 21 355555543 3445677778855555455554311 346665552 2
Q ss_pred cccc------ccCCCChhhhhhhhcccccCCceEEEe-cchhHHHHHHHHHhhc
Q 008748 471 FSEI------EERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITAL 517 (555)
Q Consensus 471 ~s~~------~~~~c~~~~~~~e~drilrp~g~~i~r-d~~~~~~~~~~~~~~~ 517 (555)
|..- .++|=--...|-+|-|+|+|||.+.++ |..+..+.+.+.+...
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEES 149 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHH
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 3321 133434457888999999999999986 7778888888888875
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=87.67 E-value=0.29 Score=43.45 Aligned_cols=38 Identities=21% Similarity=0.572 Sum_probs=27.1
Q ss_pred CccEEEeccccccccc----c--hHHHHHHHHhhcCCCcEEEEEc
Q 008748 219 SFELAHCSRCRIDWLQ----R--DGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 219 sFDlVv~s~~~l~~~~----d--~~~~L~el~RvLkPGG~lvis~ 257 (555)
.||+|.|.. +.-|+. | ...+++.+.+.|+|||.|++--
T Consensus 1 ~yDvilclS-VtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLS-VTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEE-eeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 489999854 455541 2 2458999999999999999854
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=87.67 E-value=2.6 Score=42.83 Aligned_cols=130 Identities=22% Similarity=0.220 Sum_probs=72.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
+.+|+|||||.=-++...... .+++.||+...+.--. .+....+.+..+.+.|...-+. ....|+.+..- +++
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~-~~l~~l~~~~~~~v~Dl~~~~~-~~~~DlaLllK-~lp 182 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLN-AFLAVLGVPHDARVRDLLSDPP-KEPADLALLLK-TLP 182 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHH-HHHHHTT-CEEEEEE-TTTSHT-TSEESEEEEET--HH
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHH-HHHHhhCCCcceeEeeeeccCC-CCCcchhhHHH-HHH
Confidence 579999999999998876643 5677777765542222 3334457788888888654433 35689998544 455
Q ss_pred cccchHH-HHHHHHhhcCCCcEEEEEcCCCC--CCChhhHH-HHHHHHHHHHhcCcEEEEEe
Q 008748 232 WLQRDGI-LLLELDRLLRPGGYFVYSSPEAY--AHDPENRR-IWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 232 ~~~d~~~-~L~el~RvLkPGG~lvis~P~~~--~~~~e~~~-~~~~l~~l~~~~gw~vv~~~ 289 (555)
.++.... .-.++.+.++- =.+++|.|..- .+.....+ .-..|+.++...+|.+.+.+
T Consensus 183 ~le~q~~g~g~~ll~~~~~-~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~~~ 243 (251)
T PF07091_consen 183 CLERQRRGAGLELLDALRS-PHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDRLT 243 (251)
T ss_dssp HHHHHSTTHHHHHHHHSCE-SEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEEEE
T ss_pred HHHHHhcchHHHHHHHhCC-CeEEEeccccccccCccccccCHHHHHHHhcccCCceeeeee
Confidence 5433321 22333333332 26666766531 11222222 23478888999999865443
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.62 E-value=3.1 Score=44.49 Aligned_cols=120 Identities=22% Similarity=0.230 Sum_probs=66.1
Q ss_pred HHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--------CCccccCChhhhhHHHHHHHHHcCC--CeE
Q 008748 135 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--------DIIAMSLAPNDVHENQIQFALERGI--PST 204 (555)
Q Consensus 135 y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--------~V~~vdis~~dls~a~i~~A~~rg~--~v~ 204 (555)
|......|++...-.+.+ ..+|||+.+-.|+=++.|.+. .+++-|+++.=+. ++....++-. ...
T Consensus 138 ~rqeavSmlPvL~L~v~p---~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~--~L~~q~~~l~~~~~~ 212 (375)
T KOG2198|consen 138 YRQEAVSMLPVLALGVKP---GDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLN--MLVHQLKRLPSPNLL 212 (375)
T ss_pred hhhhhhhccchhhcccCC---CCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHH--HHHHHHhccCCccee
Confidence 444555666544433444 358999999999988877763 3445555543222 2222223322 222
Q ss_pred EEEeCCCCCC---------CCCCCccEEEe----ccc-ccc---------cccc--------hHHHHHHHHhhcCCCcEE
Q 008748 205 LGVLGTKRLP---------YPSRSFELAHC----SRC-RID---------WLQR--------DGILLLELDRLLRPGGYF 253 (555)
Q Consensus 205 ~~~~d~~~Lp---------~~d~sFDlVv~----s~~-~l~---------~~~d--------~~~~L~el~RvLkPGG~l 253 (555)
+...++...| .....||-|+| +.. .+. |... .-.+|..-.++||+||.+
T Consensus 213 v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~l 292 (375)
T KOG2198|consen 213 VTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRL 292 (375)
T ss_pred eecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEE
Confidence 3333333222 23346999987 111 011 1100 123788889999999999
Q ss_pred EEEcCC
Q 008748 254 VYSSPE 259 (555)
Q Consensus 254 vis~P~ 259 (555)
+.|+-.
T Consensus 293 VYSTCS 298 (375)
T KOG2198|consen 293 VYSTCS 298 (375)
T ss_pred EEeccC
Confidence 998844
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=87.55 E-value=0.44 Score=49.19 Aligned_cols=104 Identities=12% Similarity=0.192 Sum_probs=55.8
Q ss_pred cCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhc------cc-----cc-hhcccccCCCCCCC
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR------GL-----IG-TVHDWCESFSTYPR 460 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~r------gl-----~g-~~~~~ce~~~typr 460 (555)
+....-++|+|+++|.|+.+..+.+. ++- +|+-++-. ..+.+.-+. |+ +- +..|--+-+.+-+.
T Consensus 72 ~~~~~p~~VL~iG~G~G~~~~~~l~~~~~~--~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~ 149 (283)
T PRK00811 72 FAHPNPKRVLIIGGGDGGTLREVLKHPSVE--KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETEN 149 (283)
T ss_pred hhCCCCCEEEEEecCchHHHHHHHcCCCCC--EEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCC
Confidence 33456789999999999999988775 343 34434322 222222110 11 00 11121111222356
Q ss_pred ccchhhccccccccccC-CCChhhhhhhhcccccCCceEEEe
Q 008748 461 TYDLLHAWKVFSEIEER-GCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 461 tydl~h~~~~~s~~~~~-~c~~~~~~~e~drilrp~g~~i~r 501 (555)
+||+|=.+. +...... .---..++-++-|+|+|||.+++.
T Consensus 150 ~yDvIi~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 150 SFDVIIVDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred cccEEEECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 899986432 2111000 000145667889999999999985
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.26 E-value=2.4 Score=43.07 Aligned_cols=122 Identities=12% Similarity=0.253 Sum_probs=80.4
Q ss_pred cceeEeeccCCcchhhhhccCC-C-ceEEEecccCCCCch--------h--HHhhcc--ccchhcccccCCCCCCCccch
Q 008748 399 TFRNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRMSARL--------K--IIYDRG--LIGTVHDWCESFSTYPRTYDL 464 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~-~-~wvmnv~p~~~~~~l--------~--~i~~rg--l~g~~~~~ce~~~typrtydl 464 (555)
....|+|++||.|.-+=+|..+ + += ++-++-.-++ . -.-+|. +=+=..+|+.++.. .+||+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~---I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~--~~fD~ 118 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAK---IVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF--ASFDL 118 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCc---EEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc--cccCE
Confidence 3788999999999776666554 2 22 2222211111 1 122222 11334456666554 37888
Q ss_pred hhcccccccc--------------ccCCCChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcCccceecc
Q 008748 465 LHAWKVFSEI--------------EERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSE 525 (555)
Q Consensus 465 ~h~~~~~s~~--------------~~~~c~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~w~~~~~~ 525 (555)
|=++==|=.. +.-.|++++++-=-=++|+|+|++.+==..+-+.++-+++++++|+...+.
T Consensus 119 Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~ 193 (248)
T COG4123 119 IICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRIQ 193 (248)
T ss_pred EEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEEE
Confidence 8765443211 123488999998899999999999998889999999999999999986443
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=87.21 E-value=0.41 Score=44.96 Aligned_cols=49 Identities=18% Similarity=0.138 Sum_probs=36.0
Q ss_pred ccCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecch
Q 008748 452 CESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 504 (555)
Q Consensus 452 ce~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~ 504 (555)
++.++.-+.+||++=+...+..+ -+...+|-||-|+|+|||.++|-|-.
T Consensus 35 ~~~lp~~~~~fD~v~~~~~l~~~----~d~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 35 AIDLPFDDCEFDAVTMGYGLRNV----VDRLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred hhhCCCCCCCeeEEEecchhhcC----CCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 45555445699999766555422 24678899999999999999987643
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.03 E-value=12 Score=37.37 Aligned_cols=119 Identities=12% Similarity=0.094 Sum_probs=74.0
Q ss_pred EEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC-CCeEEEEeCCCCCCCC-CCCccEEEecccccc
Q 008748 158 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYP-SRSFELAHCSRCRID 231 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~d~~~Lp~~-d~sFDlVv~s~~~l~ 231 (555)
++.||||-.|++..+|.+. .+++.|+++.-+..+..++.+... ..+....+|. -.++. +..+|+|+...+.=
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-l~~l~~~d~~d~ivIAGMGG- 96 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-LAVLELEDEIDVIVIAGMGG- 96 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC-ccccCccCCcCEEEEeCCcH-
Confidence 4999999999999999874 577889998877666655544332 2345555554 12233 34699988765311
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
.--...|.+-..-|+.=-++++ .|.. + -..+.+.+...+|.+..+.-
T Consensus 97 --~lI~~ILee~~~~l~~~~rlIL-QPn~--~-------~~~LR~~L~~~~~~I~~E~i 143 (226)
T COG2384 97 --TLIREILEEGKEKLKGVERLIL-QPNI--H-------TYELREWLSANSYEIKAETI 143 (226)
T ss_pred --HHHHHHHHHhhhhhcCcceEEE-CCCC--C-------HHHHHHHHHhCCceeeeeee
Confidence 1113355666666654334554 3332 1 13577888999998886543
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.84 E-value=0.39 Score=48.91 Aligned_cols=102 Identities=19% Similarity=0.285 Sum_probs=67.6
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCCCchhHHhhccccchhcccccCCCCCCCccchhhccccccccccCCCCh
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSF 481 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~~~l~~i~~rgl~g~~~~~ce~~~typrtydl~h~~~~~s~~~~~~c~~ 481 (555)
-|-||+||=+-.|.. ...+|--|-+|++...=+.-=|-. .+-=.+|.|+ |--++|.+.. ++
T Consensus 183 vIaD~GCGEakiA~~-~~~kV~SfDL~a~~~~V~~cDm~~-------------vPl~d~svDv--aV~CLSLMgt---n~ 243 (325)
T KOG3045|consen 183 VIADFGCGEAKIASS-ERHKVHSFDLVAVNERVIACDMRN-------------VPLEDESVDV--AVFCLSLMGT---NL 243 (325)
T ss_pred EEEecccchhhhhhc-cccceeeeeeecCCCceeeccccC-------------CcCccCcccE--EEeeHhhhcc---cH
Confidence 488999999877652 233677777777765322111100 1223467786 4466775544 49
Q ss_pred hhhhhhhcccccCCceEEEecchhHHHHHHHHH---hhcCccce
Q 008748 482 EDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFI---TALKWDGW 522 (555)
Q Consensus 482 ~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~---~~~~w~~~ 522 (555)
.+.+.|..|||+|||.++|-+-..-...|+.++ +.|..+..
T Consensus 244 ~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~ 287 (325)
T KOG3045|consen 244 ADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVK 287 (325)
T ss_pred HHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeee
Confidence 999999999999999999987665555555544 56777763
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.41 E-value=5.1 Score=39.21 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCCh
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAP 185 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~ 185 (555)
+..+|||+||..|+++....++ .|.|+|+-.
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh 104 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH 104 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee
Confidence 3569999999999999887764 466666543
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.32 E-value=3.5 Score=41.93 Aligned_cols=103 Identities=19% Similarity=0.200 Sum_probs=56.3
Q ss_pred CCEEEEECCCCcHHHHHHhc---CCCccccCChhh--hhHHH--HHHH-HHcCCCeEEEEeC---CCCCCCCCCC-ccEE
Q 008748 156 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPND--VHENQ--IQFA-LERGIPSTLGVLG---TKRLPYPSRS-FELA 223 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~---~~V~~vdis~~d--ls~a~--i~~A-~~rg~~v~~~~~d---~~~Lp~~d~s-FDlV 223 (555)
..+||++|+|+|.-+...+- .++.-.|..... +.... .+.+ .+.|..+.....+ .....+-... ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 45799999999955544443 244444443221 11110 0111 1112233333322 1111111123 9999
Q ss_pred EecccccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 224 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 224 v~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
+++.+ +......+.++.-+...|-.+|.+++..+-
T Consensus 167 lasDv-vy~~~~~e~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 167 LASDV-VYEEESFEGLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred EEeee-eecCCcchhHHHHHHHHHhcCCeEEEEEec
Confidence 99985 444566677899999999999977766543
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=86.17 E-value=1.5 Score=37.15 Aligned_cols=94 Identities=22% Similarity=0.305 Sum_probs=55.2
Q ss_pred EeeccCCcch--hhhhccCCCceEEEecccCCC-CchhHHhh----cc---ccchhcccccC-CCCCC-Cccchhhcccc
Q 008748 403 VMDMNSNLGG--FAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RG---LIGTVHDWCES-FSTYP-RTYDLLHAWKV 470 (555)
Q Consensus 403 ~~dm~~~~g~--faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rg---l~g~~~~~ce~-~~typ-rtydl~h~~~~ 470 (555)
++|.+||.|. +.+.+......+.. ++.. ..+...-. .+ +-.+..+.... ++.-. .++|++ ....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 9999999998 56666654434444 3322 22222111 11 12333344432 33322 389998 5554
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEecch
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 504 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~ 504 (555)
..... ....++-++-|+|+|+|.+++.+..
T Consensus 128 ~~~~~----~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLL----PPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcC----CHHHHHHHHHHhcCCCcEEEEEecc
Confidence 43111 1788999999999999999987654
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=86.02 E-value=1 Score=45.95 Aligned_cols=91 Identities=20% Similarity=0.401 Sum_probs=62.5
Q ss_pred cceeEeeccCCcchhhhhccCCCceEEEecccCCCCch-hHHhhcccc-chhcccccCCCCCCCccchhhcccccccccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARL-KIIYDRGLI-GTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 476 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~~~l-~~i~~rgl~-g~~~~~ce~~~typrtydl~h~~~~~s~~~~ 476 (555)
+..+++|++||-|+--+.|... .=+|.-++.+-+. --.-+||.- =-..||-+. +..||+|-+-+|+.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~----~~~fDvIscLNvLD---- 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQT----DFKFDVISCLNVLD---- 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhhcc----CCceEEEeehhhhh----
Confidence 5678999999999998888531 1134444444222 234568862 123346543 56799999999887
Q ss_pred CCCCh-hhhhhhhcccccCCceEEEe
Q 008748 477 RGCSF-EDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 477 ~~c~~-~~~~~e~drilrp~g~~i~r 501 (555)
||.- ..+|-+|-+-|+|+|.+|+-
T Consensus 163 -Rc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 163 -RCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred -ccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 4554 57788999999999999965
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=85.98 E-value=0.72 Score=46.29 Aligned_cols=95 Identities=12% Similarity=0.196 Sum_probs=50.7
Q ss_pred CCCcceeEeeccCCcch----hhhhccCCCceEEEecccCCC-CchhH----Hhhccc---cch-hcccccCCCC----C
Q 008748 396 QKNTFRNVMDMNSNLGG----FAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRGL---IGT-VHDWCESFST----Y 458 (555)
Q Consensus 396 ~~~~~rn~~dm~~~~g~----faa~l~~~~~wvmnv~p~~~~-~~l~~----i~~rgl---~g~-~~~~ce~~~t----y 458 (555)
+...-++|+|+++|+|. +|+++... - .|+-++.. ..+.+ +-.-|+ |-+ ..|..+.++. .
T Consensus 65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~-g---~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~ 140 (234)
T PLN02781 65 KIMNAKNTLEIGVFTGYSLLTTALALPED-G---RITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNND 140 (234)
T ss_pred HHhCCCEEEEecCcccHHHHHHHHhCCCC-C---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCC
Confidence 44457799999988886 34444321 1 23333322 22222 222343 111 1233333322 1
Q ss_pred -CCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 459 -PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 459 -prtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
..+||++-.+.--. ...+++-++=|.|||||.+|+.
T Consensus 141 ~~~~fD~VfiDa~k~-------~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 141 PKPEFDFAFVDADKP-------NYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CCCCCCEEEECCCHH-------HHHHHHHHHHHhcCCCeEEEEE
Confidence 34899987654211 2445666778999999999964
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=85.97 E-value=0.76 Score=46.15 Aligned_cols=105 Identities=23% Similarity=0.283 Sum_probs=60.1
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhH---------HhhccccchhcccccCCCCCCCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI---------IYDRGLIGTVHDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~---------i~~rgl~g~~~~~ce~~~typrtydl~h~~~~ 470 (555)
.+|+|++||.|+|+-.|....+ -.|+-++.. +.|-- .|+.-=|- +.+|-+-.+ |+.-+|-.
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~-~~~~~~~~~------d~~~~Dvs 147 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIR-YVTPADIFP------DFATFDVS 147 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc-cCCHhHcCC------CceeeeEE
Confidence 4899999999999998887643 234444432 34432 12221122 235555432 34333333
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEE-------------------Eecc---hhHHHHHHHHHhhcCccce
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVI-------------------IRDK---SSIINYIRKFITALKWDGW 522 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i-------------------~rd~---~~~~~~~~~~~~~~~w~~~ 522 (555)
|. ++.-+|-.|.+.|+| |.+| +||. ..+++++...+..+.|++.
T Consensus 148 fi-------S~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 148 FI-------SLISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred Ee-------ehHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 32 133356666777777 6555 5564 3457777777788888873
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.86 E-value=1.4 Score=45.01 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=73.2
Q ss_pred CCCcceeEeeccCCcchhhhhccCCCceE-----EEecccC-CCCchhHHhhccccc-hhcc----cc----cCCCCCCC
Q 008748 396 QKNTFRNVMDMNSNLGGFAAALKDKDVWV-----MNVAPVR-MSARLKIIYDRGLIG-TVHD----WC----ESFSTYPR 460 (555)
Q Consensus 396 ~~~~~rn~~dm~~~~g~faa~l~~~~~wv-----mnv~p~~-~~~~l~~i~~rgl~g-~~~~----~c----e~~~typr 460 (555)
+.+.-=+++||.+|+|--|=.+.+.--=+ -+|+-.| .|+.|.+--.|-.=+ .+-+ |- |.+++=..
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~ 176 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDD 176 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCC
Confidence 33444789999999998777765421000 2444444 458888866665322 2222 32 45553336
Q ss_pred ccchhhccccccccccCCC-ChhhhhhhhcccccCCceEEEecchhHH-HHHHHHHhhcCcc
Q 008748 461 TYDLLHAWKVFSEIEERGC-SFEDLLIEMDRMLRPEGFVIIRDKSSII-NYIRKFITALKWD 520 (555)
Q Consensus 461 tydl~h~~~~~s~~~~~~c-~~~~~~~e~drilrp~g~~i~rd~~~~~-~~~~~~~~~~~w~ 520 (555)
+||+.--. |+ .+.| .+.-.|=|+-|+|+|||.+.+=+-..+= ..++.+..+--.+
T Consensus 177 s~D~yTia--fG---IRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~ 233 (296)
T KOG1540|consen 177 SFDAYTIA--FG---IRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFD 233 (296)
T ss_pred cceeEEEe--cc---eecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhh
Confidence 99986522 22 2223 4778999999999999999887766655 4555555543333
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=85.71 E-value=3.2 Score=41.03 Aligned_cols=129 Identities=20% Similarity=0.311 Sum_probs=81.8
Q ss_pred eEeeccCCcchhhhhccC-CCceEEEecccCCCCch-hH----Hhhcccc----chhcccccC-------CCCCCCccch
Q 008748 402 NVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMSARL-KI----IYDRGLI----GTVHDWCES-------FSTYPRTYDL 464 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~-~~~wvmnv~p~~~~~~l-~~----i~~rgl~----g~~~~~ce~-------~~typrtydl 464 (555)
.|+.+++|+|-=|+.+.. .|- +---|++-...+ +- |-+-|+- .+.-|-+++ -..++.+||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 899999999965444431 132 224466655333 32 4566753 333343333 2336789999
Q ss_pred hhccccccccccCCCChhhhhhhhcccccCCceEE-------------------------------EecchhHHHHHHHH
Q 008748 465 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVI-------------------------------IRDKSSIINYIRKF 513 (555)
Q Consensus 465 ~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i-------------------------------~rd~~~~~~~~~~~ 513 (555)
|=+.+++- +..- -..+-++-+.-|+|+|||.++ ||| ++.|..+
T Consensus 106 i~~~N~lH-I~p~-~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD----~e~v~~l 179 (204)
T PF06080_consen 106 IFCINMLH-ISPW-SAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRD----IEDVEAL 179 (204)
T ss_pred eeehhHHH-hcCH-HHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccC----HHHHHHH
Confidence 88777664 2211 125788999999999999999 566 7788889
Q ss_pred HhhcCccceecccccccccCCCCCceEEEEEe
Q 008748 514 ITALKWDGWLSEVEPRIDALSSSEERVLIAKK 545 (555)
Q Consensus 514 ~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k 545 (555)
+..-..+.. .++ +.| ...++||.+|
T Consensus 180 A~~~GL~l~-~~~---~MP---ANN~~Lvfrk 204 (204)
T PF06080_consen 180 AAAHGLELE-EDI---DMP---ANNLLLVFRK 204 (204)
T ss_pred HHHCCCccC-ccc---ccC---CCCeEEEEeC
Confidence 988777652 111 233 3578999887
|
The function of this family is unknown. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=85.46 E-value=0.28 Score=42.72 Aligned_cols=95 Identities=19% Similarity=0.370 Sum_probs=54.3
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-CchhH----Hhhcc-------ccchhcccccCCCCCCCccchhhccc
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRG-------LIGTVHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~----i~~rg-------l~g~~~~~ce~~~typrtydl~h~~~ 469 (555)
.|||++||.|.|+.++...- ..+|+=++-. ..+.+ +-..| ..|=+.+..+.++. ..||+|=++-
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--~~~D~Iv~np 78 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD--GKFDLIVTNP 78 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT--T-EEEEEE--
T ss_pred EEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccC--ceeEEEEECC
Confidence 59999999999998887532 2333333322 11111 11111 13334444444543 7899998887
Q ss_pred cccccccC----CCChhhhhhhhcccccCCceEEE
Q 008748 470 VFSEIEER----GCSFEDLLIEMDRMLRPEGFVII 500 (555)
Q Consensus 470 ~~s~~~~~----~c~~~~~~~e~drilrp~g~~i~ 500 (555)
-|...... +=....++-++.|+|||||.+++
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 77632100 01345778899999999999875
|
... |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=85.32 E-value=0.81 Score=43.69 Aligned_cols=98 Identities=26% Similarity=0.407 Sum_probs=55.3
Q ss_pred CCcceeEeeccCCcc--hhhhhccCCCceEEEecccCCCCchhH---Hhhc------c-ccchhcccccCC--CC-CCCc
Q 008748 397 KNTFRNVMDMNSNLG--GFAAALKDKDVWVMNVAPVRMSARLKI---IYDR------G-LIGTVHDWCESF--ST-YPRT 461 (555)
Q Consensus 397 ~~~~rn~~dm~~~~g--~faa~l~~~~~wvmnv~p~~~~~~l~~---i~~r------g-l~g~~~~~ce~~--~t-yprt 461 (555)
..+=++|++.+||.| |.+||... ....||-+|.+..|+. -.++ + +--.-.||-+.. .. -++.
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~---~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~ 119 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF---GAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHS 119 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT----T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SS
T ss_pred hcCCceEEEECCccchhHHHHHhcc---CCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCccccccccccc
Confidence 345579999999888 88888771 2234555555444442 1121 1 234557898743 11 2468
Q ss_pred cchhhccccccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 462 YDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 462 ydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
||+|-|+.++=. .. ..+.++-=++++|.|+|.+++-
T Consensus 120 ~D~IlasDv~Y~-~~---~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 120 FDVILASDVLYD-EE---LFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp BSEEEEES--S--GG---GHHHHHHHHHHHBTT-TTEEEE
T ss_pred CCEEEEecccch-HH---HHHHHHHHHHHHhCCCCEEEEE
Confidence 999999998752 12 2567777789999999998864
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=84.14 E-value=1 Score=45.95 Aligned_cols=98 Identities=17% Similarity=0.258 Sum_probs=51.7
Q ss_pred eeEeeccCCcchhhhhccC---CCceEEEecccCCC-CchhHHhh----ccc--cchhcccccCCCCCCCccchhhcc--
Q 008748 401 RNVMDMNSNLGGFAAALKD---KDVWVMNVAPVRMS-ARLKIIYD----RGL--IGTVHDWCESFSTYPRTYDLLHAW-- 468 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~---~~~wvmnv~p~~~~-~~l~~i~~----rgl--~g~~~~~ce~~~typrtydl~h~~-- 468 (555)
..|+||.||.||++.+|.. ..- .|+-++.. .-|..+-+ .|+ +-+++.=...++.....||.|=.+
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEG---AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCC---EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 3599999999999876643 111 35555543 34433322 243 112221112233223458887543
Q ss_pred ----ccccccccC--CC----------ChhhhhhhhcccccCCceEEEe
Q 008748 469 ----KVFSEIEER--GC----------SFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 469 ----~~~s~~~~~--~c----------~~~~~~~e~drilrp~g~~i~r 501 (555)
|++...... +- .-..||-++=++|||||.++..
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 332210000 00 0135888889999999999977
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=84.09 E-value=0.53 Score=45.96 Aligned_cols=91 Identities=23% Similarity=0.315 Sum_probs=68.3
Q ss_pred eeEeeccCCcchhhhhccC-CCceEEEecccCC-CCchhHHhhccccchhcccccCCCCCCC-ccchhhccccccccccC
Q 008748 401 RNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESFSTYPR-TYDLLHAWKVFSEIEER 477 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~-~~~wvmnv~p~~~-~~~l~~i~~rgl~g~~~~~ce~~~typr-tydl~h~~~~~s~~~~~ 477 (555)
-.|||.+||-|.+.+.|.+ +.|=+.- ++- +..+.-...||+-=+-+|.-+.++.||- +||.+=.+.-+..+..
T Consensus 15 srVLDLGCGdG~LL~~L~~~k~v~g~G---vEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~- 90 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDEKQVDGYG---VEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRR- 90 (193)
T ss_pred CEEEecCCCchHHHHHHHHhcCCeEEE---EecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhH-
Confidence 4699999999999999986 4444433 232 3556678899999888999999998886 9999876666553322
Q ss_pred CCChhhhhhhhcccccCCceEEEe
Q 008748 478 GCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 478 ~c~~~~~~~e~drilrp~g~~i~r 501 (555)
-+.+|-||= |=|..+|+.
T Consensus 91 ---P~~vL~Eml---RVgr~~IVs 108 (193)
T PF07021_consen 91 ---PDEVLEEML---RVGRRAIVS 108 (193)
T ss_pred ---HHHHHHHHH---HhcCeEEEE
Confidence 678999995 446677765
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=84.06 E-value=0.91 Score=45.50 Aligned_cols=111 Identities=17% Similarity=0.222 Sum_probs=63.6
Q ss_pred CCEEEEECCCCcHHHHHHhcC-------------CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--------
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-------------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-------- 214 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-------------~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp-------- 214 (555)
..+++|+.+..|+++..|.++ .|+++|+-+... -..+.-.++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP-----------I~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP-----------IEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc-----------cCceEEeecccCCHhHHHHHHHH
Confidence 468999999999999888753 155565544221 122344455543321
Q ss_pred CCCCCccEEEeccc----ccccccch------HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhc
Q 008748 215 YPSRSFELAHCSRC----RIDWLQRD------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 281 (555)
Q Consensus 215 ~~d~sFDlVv~s~~----~l~~~~d~------~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~ 281 (555)
|.....|+|+|-.+ .+|-++.. -..|.-...+|||||.|+--.- +.....-.+.++..++++.
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif----Rg~~tslLysql~~ff~kv 183 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF----RGRDTSLLYSQLRKFFKKV 183 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh----ccCchHHHHHHHHHHhhce
Confidence 44457899998432 23322221 2256667789999999985221 1111223455666666543
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.99 E-value=7.9 Score=40.44 Aligned_cols=105 Identities=18% Similarity=0.285 Sum_probs=58.8
Q ss_pred eEeeccCCcchhhhhccCC-C--ceEEEecccCCC--CchhHHhhccccch--h-cccccCCCCCCCccchhhccccccc
Q 008748 402 NVMDMNSNLGGFAAALKDK-D--VWVMNVAPVRMS--ARLKIIYDRGLIGT--V-HDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~-~--~wvmnv~p~~~~--~~l~~i~~rgl~g~--~-~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
+|+|.+||+|-.++.|.+. | -++|-=+...+- ...+ +-+-|+=++ + -|-+|+-. ..||+|=.+==|-.
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~N-l~~N~~~~~~v~~s~~~~~v~---~kfd~IisNPPfh~ 236 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKN-LAANGVENTEVWASNLYEPVE---GKFDLIISNPPFHA 236 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHh-HHHcCCCccEEEEeccccccc---ccccEEEeCCCccC
Confidence 9999999999999999754 3 355532222110 1111 223344442 2 23344333 48999876666652
Q ss_pred cccCCCChh-----hhhhhhcccccCCceEEE--ecchhHHHHHHHHH
Q 008748 474 IEERGCSFE-----DLLIEMDRMLRPEGFVII--RDKSSIINYIRKFI 514 (555)
Q Consensus 474 ~~~~~c~~~-----~~~~e~drilrp~g~~i~--rd~~~~~~~~~~~~ 514 (555)
.+. .. -|+-+-=+-|++||-++| .-....-.+++++-
T Consensus 237 -G~~---v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~F 280 (300)
T COG2813 237 -GKA---VVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELF 280 (300)
T ss_pred -Ccc---hhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhc
Confidence 111 22 466667788999997765 43333444444433
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=80.86 E-value=4.4 Score=46.81 Aligned_cols=71 Identities=15% Similarity=0.096 Sum_probs=45.3
Q ss_pred EEEEeCCCC-CCCCCCCccEEEecccccccccch----HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHH
Q 008748 204 TLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLL 278 (555)
Q Consensus 204 ~~~~~d~~~-Lp~~d~sFDlVv~s~~~l~~~~d~----~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~ 278 (555)
.+..+|+.. ++--...||+++.-. +.=..++ ..++..+.|+++|||.|+-.+.. ..+..-+
T Consensus 150 ~l~~gd~~~~~~~~~~~~d~~~lD~--FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~a------------~~vr~~l 215 (662)
T PRK01747 150 DLWFGDANELLPQLDARADAWFLDG--FAPAKNPDMWSPNLFNALARLARPGATLATFTSA------------GFVRRGL 215 (662)
T ss_pred EEEecCHHHHHHhccccccEEEeCC--CCCccChhhccHHHHHHHHHHhCCCCEEEEeehH------------HHHHHHH
Confidence 355566432 221225699998532 1111222 56999999999999999953321 2567788
Q ss_pred HhcCcEEEEE
Q 008748 279 KSMCWKIVSK 288 (555)
Q Consensus 279 ~~~gw~vv~~ 288 (555)
...||++.+.
T Consensus 216 ~~~GF~v~~~ 225 (662)
T PRK01747 216 QEAGFTVRKV 225 (662)
T ss_pred HHcCCeeeec
Confidence 9999988754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 555 | |||
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 5e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-07 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 1e-07 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 1e-07 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 1e-07 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 2e-07 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 2e-07 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 4e-07 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 5e-07 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 1e-06 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 1e-06 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 1e-06 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 1e-06 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 1e-06 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 3e-06 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 3e-06 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 3e-06 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 4e-06 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 5e-06 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 7e-06 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 8e-06 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 9e-06 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 1e-05 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 1e-05 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 2e-05 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 3e-05 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 3e-05 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 1e-04 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 2e-04 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 3e-04 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 5e-04 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 5e-04 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 6e-04 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 6e-04 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 7e-04 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 8e-04 |
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 5e-08
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 20/129 (15%)
Query: 157 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVL--GTK 211
++D+GCG F + H ++ + D+ E + A G + +
Sbjct: 45 LRIVDLGCGFGWFCRWAHEHGASYVLGL-----DLSEKMLARARAAGPDTGITYERADLD 99
Query: 212 RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS---------SPEAYA 262
+L P SF+LA+ S + +++ L + + L PGG+FV+S + +A
Sbjct: 100 KLHLPQDSFDLAYSSLA-LHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWA 158
Query: 263 HDPENRRIW 271
D E RR W
Sbjct: 159 IDAEGRRTW 167
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 1e-07
Identities = 71/534 (13%), Positives = 139/534 (26%), Gaps = 174/534 (32%)
Query: 32 ILKCPKASPNLIYQL----KLKPNLS-LMEHYERHCPPP-----------ERRYNCLVPP 75
+ + + Q L+ N LM + P +R YN
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 76 PKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKY 135
K Y + R K L E + + ++++G G+ K
Sbjct: 127 AK-YNVS-R----LQPYLKL---RQALLELRPAK-NVLIDGVL------------GSGKT 164
Query: 136 ILALARMLKFPSDKLNNGGNIRNVLDVGCGV--ASFGAYLLSHDIIAM------SLAPND 187
+AL L + + + + ++ M + PN
Sbjct: 165 WVALDVCLSYKVQCKMDFK-----------IFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 188 VHENQIQFALERGIPSTLGVLGTKRL----PYPSRSFELAHCSRCRIDWLQRDGILLLEL 243
+ ++ I S L +RL PY C LL L
Sbjct: 214 TSRSDHSSNIKLRIHSIQAEL--RRLLKSKPYE----------NC-----------LLVL 250
Query: 244 DRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISNSC 303
+ +N + WNA +L C +++ + + V + +
Sbjct: 251 L-------------------NVQNAKAWNAF-NL---SCKILLTTRFKQVTDFLSAATTT 287
Query: 304 YLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRL 363
++ L PD ++L K + L P + PR
Sbjct: 288 HISLDH-HSMTL-----TPDEVKSLL---------LKYLDCRPQDL---PREVLTTNPRR 329
Query: 364 EEVGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFR---NVMDMNSNLGGFAA-ALKD 419
+ + E + + W D WK + NV++ F ++
Sbjct: 330 --LSIIAESIRDGLATW-----DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 420 KDVWVMNVAPVRMSARLKII----------------YDRGLIGTVHDWCESFSTYPRTYD 463
+ P + L +I + L+ ES + P Y
Sbjct: 383 PSAHI----P---TILLSLIWFDVIKSDVMVVVNKLHKYSLV--EKQPKESTISIPSIYL 433
Query: 464 LLHAWKVFSEIEERGCSFEDLLIEMDRMLR---PEGFVIIRDKSSIINYIRKFI 514
L ++E + +++ + + + + Y I
Sbjct: 434 ELKV-----KLENEY-ALHRSIVDHYNIPKTFDSDDLIPPYLD----QYFYSHI 477
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 1e-07
Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 15/152 (9%)
Query: 132 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYL--LSHDIIAMSLAPNDVH 189
+ +Y + + + G VLD+ CGV F L +++ + D+
Sbjct: 18 SQEYRSRIETLEPLLMKYMKKRGK---VLDLACGVGGFSFLLEDYGFEVVGV-----DIS 69
Query: 190 ENQIQFALERGIPSTLGVLGTK----RLPYPSRSFELAHCSRCRIDWLQRD-GILLLELD 244
E+ I+ A E V +L + ++F+ + + + + E+
Sbjct: 70 EDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVR 129
Query: 245 RLLRPGGYFVYSSPEAYAHDPENRRIWNAMYD 276
R+L+P G F+ + P +
Sbjct: 130 RVLKPSGKFIMYFTDLRELLPRLKESLVVGQK 161
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 1e-07
Identities = 23/157 (14%), Positives = 50/157 (31%), Gaps = 30/157 (19%)
Query: 138 ALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYL---LSHDIIAMSLAPNDVHENQIQ 194
A++ + + D + D+GCG +L + I + D+ + I+
Sbjct: 37 AVSFINELTDDA--------KIADIGCGTGGQTLFLADYVKGQITGI-----DLFPDFIE 83
Query: 195 FALERGIPSTLGVLGT------KRLPYPSRSFEL--AHCSRCRIDWLQRDGILLLELDRL 246
E + + LP+ + +L + + I + E +
Sbjct: 84 IFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIG----FERGMNEWSKY 139
Query: 247 LRPGGYFVYSSPEAYAHDP--ENRRIWNAMYDLLKSM 281
L+ GG+ S + + E W Y + +
Sbjct: 140 LKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVI 176
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 1e-07
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 12/120 (10%)
Query: 158 NVLDVGCGVASFGAYL--LSHDIIAMSLAPNDVHENQIQFALERGIPSTLG-VLG-TKRL 213
VLDVGCG L + + + D+ E IQ ERG L + G L
Sbjct: 56 EVLDVGCGDGYGTYKLSRTGYKAVGV-----DISEVMIQKGKERGEGPDLSFIKGDLSSL 110
Query: 214 PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS--SPEAYAHDPENRRIW 271
P+ + FE ++W + L E+ R+L+ GY + P A + R++
Sbjct: 111 PFENEQFEAIMAINS-LEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLY 169
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 2e-07
Identities = 26/175 (14%), Positives = 52/175 (29%), Gaps = 34/175 (19%)
Query: 126 THFHDGADKY--------ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYL---L 174
F ++ + AL+ + + D+GCG L +
Sbjct: 17 CDFFSNMERQGPGSPEVTLKALSFIDNLTEKS--------LIADIGCGTGGQTMVLAGHV 68
Query: 175 SHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTK--RLPYPSRSFELAHCSRC 228
+ + + D I G+ + + + LP+ + +L S
Sbjct: 69 TGQVTGL-----DFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIW-SEG 122
Query: 229 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDP--ENRRIWNAMYDLLKSM 281
I + L E + L+ GGY S + + E W Y + ++
Sbjct: 123 AI-YNIGFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTI 176
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 2e-07
Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 11/105 (10%)
Query: 157 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPS--TLGVLGTK 211
+ VLD+GCG Y H ++ + D+ E + A + +
Sbjct: 46 KTVLDLGCGFGWHCIYAAEHGAKKVLGI-----DLSERMLTEAKRKTTSPVVCYEQKAIE 100
Query: 212 RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 256
+ ++ + S + ++ + ++ L+ G F++S
Sbjct: 101 DIAIEPDAYNVVLSSLA-LHYIASFDDICKKVYINLKSSGSFIFS 144
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 4e-07
Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 10/121 (8%)
Query: 159 VLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP 216
+LDVG G + +L S H I + + ++ A + T L
Sbjct: 45 ILDVGSGTGRWTGHLASLGHQIEGL-----EPATRLVELARQTHPSVTFHHGTITDLSDS 99
Query: 217 SRSFELAHCSRCRIDWLQRDGI--LLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAM 274
+ + + + + L+ L + GG + S + +P + A
Sbjct: 100 PKRWAGLLAWYS-LIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAY 158
Query: 275 Y 275
Sbjct: 159 R 159
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 5e-07
Identities = 29/153 (18%), Positives = 47/153 (30%), Gaps = 27/153 (17%)
Query: 130 DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPND 187
D + L L+R+L P + VL+ GCG A A D
Sbjct: 33 DPELTFDLWLSRLLT-PQTR---------VLEAGCGHGPDAARFGPQAARWAAY-----D 77
Query: 188 VHENQIQFALERGIPSTLGVLGTK-RLPYPSRS-FELAHCSRCRIDWLQRDGILLLELDR 245
++ A + + K LP + F L R + L
Sbjct: 78 FSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRRGPTSVIL-------RLPE 130
Query: 246 LLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLL 278
L P +F+Y P + R+ +D++
Sbjct: 131 LAAPDAHFLYVGPRLNVPEVP-ERLAAVGWDIV 162
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 1e-06
Identities = 21/157 (13%), Positives = 56/157 (35%), Gaps = 18/157 (11%)
Query: 134 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHE 190
K I+ ++ +F + + VLD G G + + + ++ +
Sbjct: 3 KTIIRQPQLYRFLKYCNESNLDKT-VLDCGAGGDLPPLSIFVEDGYKTYGI-----EISD 56
Query: 191 NQIQFALER----GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI--LLLELD 244
Q++ A + ++LP+ S + I ++++ + + E+
Sbjct: 57 LQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGT-IFHMRKNDVKEAIDEIK 115
Query: 245 RLLRPGGYFVYS--SPEAYAHDPENRRIWNAMYDLLK 279
R+L+PGG + + + ++ + L +
Sbjct: 116 RVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLER 152
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 34/185 (18%), Positives = 56/185 (30%), Gaps = 29/185 (15%)
Query: 107 SDQHWMVVNGEKINF-----PGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLD 161
+ + GE ++F G D D+ + +L S VLD
Sbjct: 16 FTDPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGD--------RVLD 67
Query: 162 VGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLG-----VLGTKR- 212
VGCG+ L + + + + Q+ A R + L
Sbjct: 68 VGCGIGKPAVRLATARDVRVTGI-----SISRPQVNQANARATAAGLANRVTFSYADAMD 122
Query: 213 LPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP-EAYAHDPENRRIW 271
LP+ SF+ R L E+ R+LRPGG + + +
Sbjct: 123 LPFEDASFDAVWALESLHHMPDRGR-ALREMARVLRPGGTVAIADFVLLAPVEGAKKEAV 181
Query: 272 NAMYD 276
+A
Sbjct: 182 DAFRA 186
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 9/113 (7%)
Query: 159 VLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP 216
+LD GCG G YL HD++ D+ I +A + + V
Sbjct: 50 ILDAGCGQGRIGGYLSKQGHDVLGT-----DLDPILIDYAKQDFPEARWVVGDLSVDQIS 104
Query: 217 SRSFELAHCSRCRIDWLQRDGIL--LLELDRLLRPGGYFVYSSPEAYAHDPEN 267
F+L + + +L DG L + R L G V +
Sbjct: 105 ETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGD 157
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 33/174 (18%), Positives = 61/174 (35%), Gaps = 27/174 (15%)
Query: 126 THFHDGADKYIL-ALARMLKFPSDKLNNGGNIR---NVLDVGCGVASFGAYLL----SHD 177
H + + L A L+ L++ VL+ GCG+ + L +
Sbjct: 7 VHGYSEREALRLSEQAETLE---KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAE 63
Query: 178 IIAMSLAPNDVHENQIQFALER----GIPSTLGVLGT-KRLPYPSRSFELAHCSRCRIDW 232
I ++ D+ ++ A E GI + + LP+ SF+ ++
Sbjct: 64 ITSI-----DISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV-LEH 117
Query: 233 LQRDGILLLELDRLLRPGGYFV-----YSSPEAYAHDPENRRIWNAMYDLLKSM 281
LQ L L ++L+PGG + S + + WN + + M
Sbjct: 118 LQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYM 171
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 31/176 (17%), Positives = 60/176 (34%), Gaps = 30/176 (17%)
Query: 124 GGTHFHDG-------ADKYILALARMLKFPSDKLNNGGNIR---NVLDVGCGVASFGAYL 173
GG H G D+ A R ++ + +L G ++ LD+G G +L
Sbjct: 41 GGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFL 100
Query: 174 LSH---DIIAMSLAPNDVHENQIQFALERGIPSTLG-----VLGTKR-LPYPSRSFEL-- 222
+ I +++AP Q + E + L G+ +P S++
Sbjct: 101 VRKFGVSIDCLNIAP-----VQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIW 155
Query: 223 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP-EAYAHDPENRRIWNAMYDL 277
+ + + + E R+L+P G + P + D + + L
Sbjct: 156 SQDAFLHSPDKLK---VFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKL 208
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 3e-06
Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 20/153 (13%)
Query: 127 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMS 182
F D A Y ++ ++L++ VLD+GCG + +
Sbjct: 60 AFLD-AGHYQPLRDAIVAQLRERLDDKA--TAVLDIGCGEGYYTHAFADALPEITTFGL- 115
Query: 183 LAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLE 242
DV + I+ A +R T V + RLP+ S + I E
Sbjct: 116 ----DVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIR----IYAPC----KAEE 163
Query: 243 LDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMY 275
L R+++PGG+ + ++P I+N ++
Sbjct: 164 LARVVKPGGWVITATPGPRHLMELKGLIYNEVH 196
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 3e-06
Identities = 21/159 (13%), Positives = 47/159 (29%), Gaps = 16/159 (10%)
Query: 121 FPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DI 178
+ G + I + ++ + LN + D+G G + L + +
Sbjct: 5 YNSIGKQYSQTRVPDIRIVNAII----NLLNLPKGSV-IADIGAGTGGYSVALANQGLFV 59
Query: 179 IAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 237
A+ + Q A+ + G L P +S + I
Sbjct: 60 YAV-----EPSIVMRQQAVVHPQVEWFTGYAE--NLALPDKSVDGVISILA-IHHFSHLE 111
Query: 238 ILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYD 276
E+ R++R G + + A + +++
Sbjct: 112 KSFQEMQRIIRDGTIVLLTFDIRLAQRIWLYDYFPFLWE 150
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 3e-06
Identities = 38/235 (16%), Positives = 72/235 (30%), Gaps = 26/235 (11%)
Query: 74 PPPKGYKIPVRWPASRDEVWKANIPHTHLAE-----EKSDQHWMVVNGEKINFPGGGTHF 128
P G + S DE+WKA + K+ ++W V GG H
Sbjct: 15 LPISGRDTNGKTYRSTDEMWKAELTGDLYDPEKGWYGKALEYWRTVPATVSGVLGGMDHV 74
Query: 129 HDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDV 188
HD + L LD G G+ LL+ + + +
Sbjct: 75 HDVDIEGSRNFIASLPGHGTS--------RALDCGAGIGRITKNLLTK--LYATTDLLEP 124
Query: 189 HENQIQFALERGIPSTLG---VLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLL-ELD 244
++ ++ A +G + + P +++L I D +
Sbjct: 125 VKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQ 184
Query: 245 RLLRPGGYFV----YSSPEAYAHDPENRRIWNAMYDLLKSMC---WKIVSKKDQT 292
+ L P GY S+ + + D E+ + + + ++V + Q
Sbjct: 185 QALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQE 239
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 4e-06
Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 10/127 (7%)
Query: 157 RNVLDVGCGVASFGAYL--LSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP 214
VLD+G G + +L +++ + D + ++ A E+G+ + + LP
Sbjct: 56 CRVLDLGGGTGKWSLFLQERGFEVVLV-----DPSKEMLEVAREKGVKNVVEAKAED-LP 109
Query: 215 YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS--SPEAYAHDPENRRIWN 272
+PS +FE + +++ E+ R+L P G + + + + + W+
Sbjct: 110 FPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWD 169
Query: 273 AMYDLLK 279
+ LK
Sbjct: 170 QITRFLK 176
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 5e-06
Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 17/200 (8%)
Query: 105 EKSDQHWMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGC 164
K+ +W + GG H D I + + L+ + N LD G
Sbjct: 32 SKAKTYWKQIPPTVDGMLGGYGHISS-ID--INSSRKFLQRFLREGPNKTGTSCALDCGA 88
Query: 165 GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVL-----GTKRLPYPSRS 219
G+ LL + + D+ E+ + A V G + S
Sbjct: 89 GIGRITKRLLLP--LFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDS 146
Query: 220 FELAHCSRCRIDWLQRDGILLL-ELDRLLRPGGYFVYS---SPEAYAHDPENRRI---WN 272
+++ + L LRP G V + E D + + +
Sbjct: 147 YDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLD 206
Query: 273 AMYDLLKSMCWKIVSKKDQT 292
+ ++ S +++++ Q
Sbjct: 207 VVRRIICSAGLSLLAEERQE 226
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 7e-06
Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 17/142 (11%)
Query: 157 RNVLDVGCGVASFGAYL--LSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP 214
+ VLD+GC + GA + + + + + A E+ LG + T +P
Sbjct: 34 KEVLDIGCSSGALGAAIKENGTRVSGI-----EAFPEAAEQAKEKLDHVVLGDIETMDMP 88
Query: 215 YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAM 274
Y F+ ++ L ++ ++ ++ G + S P N + +
Sbjct: 89 YEEEQFDCVIFGDV-LEHLFDPWAVIEKVKPYIKQNGVILASIP--------NVSHISVL 139
Query: 275 YDLLKS-MCWKIVSKKDQTVIW 295
LL + D+T I
Sbjct: 140 APLLAGNWTYTEYGLLDKTHIR 161
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 8e-06
Identities = 24/169 (14%), Positives = 51/169 (30%), Gaps = 32/169 (18%)
Query: 124 GGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIA 180
G + G + + ++ + VLD+G G+ Y+
Sbjct: 32 GENYISSGGLEATKKILSDIELNENS--------KVLDIGSGLGGGCMYINEKYGAHTHG 83
Query: 181 MSLAPNDVHENQIQFALERGIPS---TLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 237
+ D+ N + A ER + +P +F+L + D +
Sbjct: 84 I-----DICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYS----RDAILALS 134
Query: 238 I-----LLLELDRLLRPGGYFVYS----SPEAYAHDPENRRIWNAMYDL 277
+ L + + L+P G + + + + D + Y L
Sbjct: 135 LENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTL 183
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 9e-06
Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 6/122 (4%)
Query: 159 VLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP 216
+L + G +L S +++ A+ + + Q A E+G+ T
Sbjct: 33 ILCLAEGEGRNACFLASLGYEVTAVDQSSVGL-AKAKQLAQEKGVKITTVQSNLADFDIV 91
Query: 217 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS--SPEAYAHDPENRRIWNAM 274
+ ++E C + R L ++ + L+PGG F+ +PE ++ + + +
Sbjct: 92 ADAWEGIVSIFCHLPSSLRQQ-LYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLL 150
Query: 275 YD 276
Sbjct: 151 PK 152
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 159 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLPYPS 217
+L+VG G + L + + + E + R +T V + LP+P
Sbjct: 40 LLEVGAGTGYWLRRLPYPQKVGV-----EPSEAMLAVGRRRAPEATW-VRAWGEALPFPG 93
Query: 218 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV 254
SF++ +++++ +LLE R+LRPGG V
Sbjct: 94 ESFDVVLLFTT-LEFVEDVERVLLEARRVLRPGGALV 129
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 10/126 (7%)
Query: 158 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPS 217
+++G G F L I + + E + A +RG+ G + LP
Sbjct: 50 RGVEIGVGTGRFAVPL--KIKIGV-----EPSERMAEIARKRGVFVLKGTA--ENLPLKD 100
Query: 218 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDL 277
SF+ A I ++ L E R+L+ GGY + + +
Sbjct: 101 ESFDFA-LMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVF 159
Query: 278 LKSMCW 283
K+ +
Sbjct: 160 YKNARF 165
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 14/118 (11%)
Query: 159 VLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP 216
++D GCG + YLL + + D++ ++ E+ S + + + P
Sbjct: 21 IVDYGCGNGFYCKYLLEFATKLYCI-----DINVIALKEVKEK-FDSVITL--SDPKEIP 72
Query: 217 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV---YSSPEAYAHDPENRRIW 271
S + + + ++ E+ R+L+ G + + P + R+
Sbjct: 73 DNSVDFILFANS-FHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMD 129
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 3e-05
Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 13/148 (8%)
Query: 128 FHDGADKY-------ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYL--LSHDI 178
A Y ++ + ++ G L++G G L +
Sbjct: 5 LLRAAYAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRY 64
Query: 179 IAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLPYPSRSFELAHCSRCRIDWLQRDG 237
IA+ + + + A + V + +P P S +
Sbjct: 65 IALDADAAMLEVFRQKIA-GVDRKVQV-VQADARAIPLPDESVHGVIVVHL-WHLVPDWP 121
Query: 238 ILLLELDRLLRPGGYFVYSSPEAYAHDP 265
+L E R+L+PGG + +A A
Sbjct: 122 KVLAEAIRVLKPGGALLEGWDQAEASPE 149
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 3e-05
Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 12/105 (11%)
Query: 157 RNVLDVGCGVASFGAYL--LSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVL---GTK 211
VLD+GCG L + + + D + A G +
Sbjct: 54 ERVLDLGCGEGWLLRALADRGIEAVGV-----DGDRTLVDAARAAGAGEVHLASYAQLAE 108
Query: 212 RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 256
+ ++L C+ + LL + LL PGG V
Sbjct: 109 AKVPVGKDYDLI-CANFALLHQDIIE-LLSAMRTLLVPGGALVIQ 151
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 15/122 (12%)
Query: 159 VLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPY 215
+L++GCG +L+ D+ A D A R G P
Sbjct: 47 ILELGCGAGYQAEAMLAAGFDVDAT-----DGSPELAAEASRRLGRP---VRTMLFHQLD 98
Query: 216 PSRSFELAHCSRCRIDWLQRDGI--LLLELDRLLRPGGYFVYSSPEAYA-HDPENRRIWN 272
+++ C + + RD + +L + R L+PGG F S + R +N
Sbjct: 99 AIDAYDAVWAHAC-LLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYN 157
Query: 273 AM 274
Sbjct: 158 YP 159
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 12/122 (9%)
Query: 159 VLDVGCG--VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLPY 215
VLD+G G + + I + V FA E+G+ + GT + LP+
Sbjct: 25 VLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVAS-SFAQEKGVENVRFQQGTAESLPF 83
Query: 216 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV---YSSPEAYAHDPENRRIWN 272
P SF++ C R + E+ R+L+ G F+ + +PE DP N
Sbjct: 84 PDDSFDIITC-RYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPE----DPVLDEFVN 138
Query: 273 AM 274
+
Sbjct: 139 HL 140
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 3e-04
Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 10/111 (9%)
Query: 148 DKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTL 205
++L G +VL++ G + +L + A+ D I A G+ +
Sbjct: 39 ERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTAL-----DGSAEMIAEAGRHGLDNVE 93
Query: 206 GVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI--LLLELDRLLRPGGYFV 254
P R ++ + + + D + + PGG
Sbjct: 94 FRQQDLFDWTPDRQWDAVFFAHW-LAHVPDDRFEAFWESVRSAVAPGGVVE 143
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 5e-04
Identities = 29/142 (20%), Positives = 47/142 (33%), Gaps = 32/142 (22%)
Query: 159 VLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-- 210
VLD+GCG YL S +I + D+ +NQ++ A + G+
Sbjct: 87 VLDLGCG-TGRDVYLASKLVGEHGKVIGV-----DMLDNQLEVARKYVEYHAEKFFGSPS 140
Query: 211 -----------------KRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYF 253
+ P S ++ C + L E+ R+LR GG
Sbjct: 141 RSNVRFLKGFIENLATAEPEGVPDSSVDIVIS-NCVCNLSTNKLALFKEIHRVLRDGGEL 199
Query: 254 VYSSPEAYAHDPENRRIWNAMY 275
+S A E + +Y
Sbjct: 200 YFSDVYADRRLSEAAQQDPILY 221
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 5e-04
Identities = 18/140 (12%), Positives = 35/140 (25%), Gaps = 18/140 (12%)
Query: 153 GGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK- 211
G + ++DVGCG + + + +D+ I+ A S
Sbjct: 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSF 93
Query: 212 ------------RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV---YS 256
+ ++ C W + LR G Y+
Sbjct: 94 KISSSDDFKFLGADSVDKQKIDMITAVEC-AHWFDFE-KFQRSAYANLRKDGTIAIWGYA 151
Query: 257 SPEAYAHDPENRRIWNAMYD 276
P + + + Y
Sbjct: 152 DPIFPDYPEFDDLMIEVPYG 171
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 6e-04
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 15/106 (14%)
Query: 159 VLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTL------GVLGT 210
++D CG + +L +I + DV ++ ++ A + + + G++
Sbjct: 60 LIDFACGNGTQTKFLSQFFPRVIGL-----DVSKSALEIAAKENTAANISYRLLDGLVPE 114
Query: 211 KRLPYPSRSFELAHCSRCRIDWLQRDGI--LLLELDRLLRPGGYFV 254
+ S + R + + L L LL G
Sbjct: 115 QAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMY 160
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 6e-04
Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 22/141 (15%)
Query: 158 NVLDVGCGVASFGAYLL-----SHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVL 208
+++D GCG G L+ + D E + A E S
Sbjct: 25 HIVDYGCGYGYLGLVLMPLLPEGSKYTGI-----DSGETLLAEARELFRLLPYDSEFLEG 79
Query: 209 GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV------YSSPEAYA 262
+ +++A C + + +L ++ ++ GG + S+ +Y
Sbjct: 80 DATEIELND-KYDIAIC-HAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYL 137
Query: 263 HDPENRRIWNAMYDLLKSMCW 283
D E + + + L K
Sbjct: 138 LDGEKQSEFIQLGVLQKLFES 158
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 7e-04
Identities = 25/166 (15%), Positives = 46/166 (27%), Gaps = 26/166 (15%)
Query: 124 GGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIA 180
T F + + +D+G G + L I A
Sbjct: 21 SKTLFAPIYPIIAENIINRFGITAGT---------CIDIGSGPGALSIALAKQSDFSIRA 71
Query: 181 MSLAPNDVHENQIQFALERGIPSTLG-----VLGT-KRLPYPSRSFELAHCSRCRIDWLQ 234
+ D ++ + AL+ + L V G +P +L SR + + +
Sbjct: 72 L-----DFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLI-VSRGSVFFWE 125
Query: 235 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS 280
E+ R+L+ GG + + I M
Sbjct: 126 DVATAFREIYRILKSGGKTYIG--GGFGNKELRDSISAEMIRKNPD 169
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 8e-04
Identities = 19/154 (12%), Positives = 45/154 (29%), Gaps = 31/154 (20%)
Query: 157 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP 214
+LD+GCG + +++ D I+ A + V +
Sbjct: 59 EFILDLGCGTGQLTEKIAQSGAEVLGT-----DNAATMIEKARQNYPHLHFDVADARNFR 113
Query: 215 YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP---------------- 258
+ + + + W++ + + + L+ GG FV
Sbjct: 114 -VDKPLDAVFSNAM-LHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNAL 171
Query: 259 -EAYAHDPENRRIW-----NAMYDLLKSMCWKIV 286
H+P+ W ++L+ + +
Sbjct: 172 ETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVT 205
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 555 | |||
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.61 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.6 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.59 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.58 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.57 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.57 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.57 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.57 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.57 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.57 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.56 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.56 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.55 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.55 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.54 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.53 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.53 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.53 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.52 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.52 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.52 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.52 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.52 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.51 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.51 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.5 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.49 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.49 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.49 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.48 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.48 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.48 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.48 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.48 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.47 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.47 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.46 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.46 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.46 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.46 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.46 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.46 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.45 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.45 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.45 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.44 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.44 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.43 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.43 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.42 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.42 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.42 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.42 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.42 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.42 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.41 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.41 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.41 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.4 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.4 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.4 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.39 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.38 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.38 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.38 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.38 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.38 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.37 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.37 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.37 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.37 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.37 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.36 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.36 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.35 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.35 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.35 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.34 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.34 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.34 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.34 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.33 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.33 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.32 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.31 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.31 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.3 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.3 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.3 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.3 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.29 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.29 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.29 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.29 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.28 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.28 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.26 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.26 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.25 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.25 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.24 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.23 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.23 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.23 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.22 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.22 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.22 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.22 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.22 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.21 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.21 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.2 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.2 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.2 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.2 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.2 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.2 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.2 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.19 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.19 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.18 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.18 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.18 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.18 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.17 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.16 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.16 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.16 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.16 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.16 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.15 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.15 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.14 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.13 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.13 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.13 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.12 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.12 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.12 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.11 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.11 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.11 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.1 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.1 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.09 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.07 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.07 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.07 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.06 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.06 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.05 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.05 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.04 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.04 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.04 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.03 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.03 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.03 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.02 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.02 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.02 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.02 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.01 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.01 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.01 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.0 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.99 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.99 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.99 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.98 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.97 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.97 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.96 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.96 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.95 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.95 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.95 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.94 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.93 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.93 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.93 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.93 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.93 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.91 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.91 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.91 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.9 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.9 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.9 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.89 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.89 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.88 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.88 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.88 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.88 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.88 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.88 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.88 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.87 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.87 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.86 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.85 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.85 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.84 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.84 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.83 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.82 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.82 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.81 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.81 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.81 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.8 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.79 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.78 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.77 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.77 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.77 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.77 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.76 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.76 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.75 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.75 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.74 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.73 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.72 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.72 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.71 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.71 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.7 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.68 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.68 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.68 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.67 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.66 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.66 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.65 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.65 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.64 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.63 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.63 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.63 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.62 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.61 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.6 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.59 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.55 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.55 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.53 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.48 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.38 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.36 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.31 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.28 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.28 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.23 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.2 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.13 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.13 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.1 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.07 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.06 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.04 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.04 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.0 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.98 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 97.97 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 97.96 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.96 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 97.9 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 97.88 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 97.88 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.86 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.85 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 97.81 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 97.8 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.78 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.77 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 97.76 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 97.76 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 97.75 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.75 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 97.71 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.7 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.68 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.68 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.67 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 97.67 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 97.67 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.65 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 97.64 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.64 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 97.62 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 97.62 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 97.61 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.6 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 97.6 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 97.6 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 97.6 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 97.59 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 97.58 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 97.58 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 97.58 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.56 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 97.56 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 97.55 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 97.53 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 97.53 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.53 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 97.52 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 97.52 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 97.51 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 97.51 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 97.5 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 97.5 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 97.5 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 97.5 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 97.49 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 97.49 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.47 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 97.46 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 97.46 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 97.45 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 97.45 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 97.45 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 97.43 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 97.43 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.42 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 97.41 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 97.4 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 97.4 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 97.4 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 97.38 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 97.38 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.38 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.37 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 97.37 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 97.37 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 97.34 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.34 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.33 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 97.33 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 97.33 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 97.32 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 97.32 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 97.32 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 97.28 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 97.28 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.26 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 97.25 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 97.24 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 97.22 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 97.21 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 97.2 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 97.2 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 97.2 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 97.19 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 97.18 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 97.17 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 97.16 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 97.16 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 97.15 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 97.14 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 97.13 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 97.11 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 97.11 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 97.09 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 97.08 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 97.07 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 97.07 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 97.06 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 97.05 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 97.04 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 97.04 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 97.03 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 97.01 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 96.99 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 96.99 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 96.98 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 96.98 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 96.97 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 96.96 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 96.94 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 96.94 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 96.93 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 96.93 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 96.92 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 96.92 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 96.89 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 96.87 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 96.86 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 96.84 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 96.83 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 96.78 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 96.76 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 96.75 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 96.74 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 96.72 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 96.68 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 96.67 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 96.65 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 96.64 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 96.64 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 96.59 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 96.59 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 96.54 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 96.5 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 96.46 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 96.46 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 96.43 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 96.43 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 96.42 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 96.42 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 96.42 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 96.41 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 96.4 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 96.4 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 96.37 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 96.37 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 96.35 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 96.35 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 96.35 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 96.25 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.25 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 96.24 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 96.23 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 96.23 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 96.23 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 96.22 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.22 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 96.19 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 96.19 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 96.16 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 96.14 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 96.13 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 96.13 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 96.02 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 95.96 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 95.96 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 95.9 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 95.9 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 95.87 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 95.85 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 95.84 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 95.77 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 95.77 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 95.75 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 95.74 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 95.74 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 95.67 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 95.66 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 95.61 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 95.6 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 95.59 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 95.59 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 95.56 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 95.52 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 95.5 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 95.49 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 95.47 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 95.46 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.43 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 95.42 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 95.4 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 95.32 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 95.24 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 95.19 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 95.19 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 95.19 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 95.18 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 95.18 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 95.18 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 95.16 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 95.16 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 95.11 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 95.1 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.03 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 95.01 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 95.01 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 94.99 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 94.96 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 94.87 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 94.81 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 94.76 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 94.7 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 94.66 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 94.65 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 94.64 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 94.61 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 94.54 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 94.4 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 94.36 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.31 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 94.25 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 94.24 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 94.22 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 94.2 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 94.19 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 94.15 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 94.14 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 94.12 |
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.61 E-value=7.5e-15 Score=145.35 Aligned_cols=134 Identities=13% Similarity=0.201 Sum_probs=102.6
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC-CCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
+..+|||||||+|.++..|++. .++++|+++.++..+.... .+.+ .++.+.++|+..+|+++++||+|+|.. +++
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~-~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~-~l~ 114 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFI-EGNGHQQVEYVQGDAEQMPFTDERFHIVTCRI-AAH 114 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHH-HHTTCCSEEEEECCC-CCCSCTTCEEEEEEES-CGG
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHH-HhcCCCceEEEEecHHhCCCCCCCEEEEEEhh-hhH
Confidence 3468999999999999999874 6889999888886665333 3334 468999999999999999999999887 688
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHH-----------------HHHHHHHHHHhcCcEEEEEeec
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRR-----------------IWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~-----------------~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
|.+++..++.++.|+|||||+|+++.+.... ...... ...++.+++++.||+++.....
T Consensus 115 ~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 115 HFPNPASFVSEAYRVLKKGGQLLLVDNSAPE-NDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEEEEBCS-SHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHcCCCCEEEEEEcCCCC-CHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 9999999999999999999999997543211 111100 1136778899999988765544
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.7e-16 Score=156.06 Aligned_cols=96 Identities=24% Similarity=0.361 Sum_probs=80.6
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 234 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~ 234 (555)
.+|||||||+|.++..|++. +|+|+|+++.++ +.|+ +..++.+.+++++.+|+++++||+|+|+. ++||.
T Consensus 41 ~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml-----~~a~-~~~~v~~~~~~~e~~~~~~~sfD~v~~~~-~~h~~- 112 (257)
T 4hg2_A 41 GDALDCGCGSGQASLGLAEFFERVHAVDPGEAQI-----RQAL-RHPRVTYAVAPAEDTGLPPASVDVAIAAQ-AMHWF- 112 (257)
T ss_dssp SEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHH-----HTCC-CCTTEEEEECCTTCCCCCSSCEEEEEECS-CCTTC-
T ss_pred CCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhh-----hhhh-hcCCceeehhhhhhhcccCCcccEEEEee-ehhHh-
Confidence 58999999999999999975 677777776555 4443 34679999999999999999999999988 57887
Q ss_pred chHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 235 RDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 235 d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
++..++.|+.|+|||||.|++.....
T Consensus 113 ~~~~~~~e~~rvLkpgG~l~~~~~~~ 138 (257)
T 4hg2_A 113 DLDRFWAELRRVARPGAVFAAVTYGL 138 (257)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred hHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 46789999999999999999877543
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=144.96 Aligned_cols=150 Identities=20% Similarity=0.300 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC--CeEEE
Q 008748 132 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI--PSTLG 206 (555)
Q Consensus 132 a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~rg~--~v~~~ 206 (555)
.....+.+.+.+.. .+..+|||||||+|.++..+++ ..++++|+++.++..+..+. ...+. ++.+.
T Consensus 46 ~~~~~~~l~~~~~~--------~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~~~ 116 (273)
T 3bus_A 46 TDRLTDEMIALLDV--------RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARA-TAAGLANRVTFS 116 (273)
T ss_dssp HHHHHHHHHHHSCC--------CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHH-HHTTCTTTEEEE
T ss_pred HHHHHHHHHHhcCC--------CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHH-HhcCCCcceEEE
Confidence 34445555555542 2346999999999999999885 36888888888776655333 33343 58999
Q ss_pred EeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhh----HH-H-----------
Q 008748 207 VLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN----RR-I----------- 270 (555)
Q Consensus 207 ~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~----~~-~----------- 270 (555)
.+|+..+|+++++||+|++.. +++|.+++..+++++.++|||||+++++++......... .. .
T Consensus 117 ~~d~~~~~~~~~~fD~v~~~~-~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (273)
T 3bus_A 117 YADAMDLPFEDASFDAVWALE-SLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGG 195 (273)
T ss_dssp ECCTTSCCSCTTCEEEEEEES-CTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCC
T ss_pred ECccccCCCCCCCccEEEEec-hhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCC
Confidence 999999999989999999887 688899999999999999999999999875432111111 01 1
Q ss_pred HHHHHHHHHhcCcEEEEEeec
Q 008748 271 WNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 271 ~~~l~~l~~~~gw~vv~~~~~ 291 (555)
-.++.+++++.||+++..+..
T Consensus 196 ~~~~~~~l~~aGf~~~~~~~~ 216 (273)
T 3bus_A 196 IDEYESDVRQAELVVTSTVDI 216 (273)
T ss_dssp HHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHcCCeEEEEEEC
Confidence 146788899999998866553
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-15 Score=149.80 Aligned_cols=134 Identities=15% Similarity=0.176 Sum_probs=98.4
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
+..+|||||||+|.++..|++. .++++|+++.++..+..+.. . ...+.+..+|+..+++++++||+|+|.. +++
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-~-~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~ 169 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELA-G-MPVGKFILASMETATLPPNTYDLIVIQW-TAI 169 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTT-T-SSEEEEEESCGGGCCCCSSCEEEEEEES-CGG
T ss_pred CCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhc-c-CCceEEEEccHHHCCCCCCCeEEEEEcc-hhh
Confidence 3469999999999999988764 47888887776644442221 1 1468889999989999889999999988 588
Q ss_pred cc--cchHHHHHHHHhhcCCCcEEEEEcCCCCCC-------ChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 232 WL--QRDGILLLELDRLLRPGGYFVYSSPEAYAH-------DPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 232 ~~--~d~~~~L~el~RvLkPGG~lvis~P~~~~~-------~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
|. .+...++.++.++|||||+++++++..... .......-.++.+++++.||+++.....
T Consensus 170 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 238 (254)
T 1xtp_A 170 YLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQ 238 (254)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeeec
Confidence 88 456789999999999999999987521100 0000012357888999999998876544
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=139.29 Aligned_cols=133 Identities=16% Similarity=0.222 Sum_probs=100.6
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
..+|||||||+|.++..|++. .++++|+++.++ +.++++.. ++.+..+|+..++++ ++||+|+|.. ++++
T Consensus 46 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~-----~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~-~l~~ 118 (220)
T 3hnr_A 46 FGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMR-----MIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTY-AFHH 118 (220)
T ss_dssp CSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHH-----HHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEES-CGGG
T ss_pred CCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHH-----HHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECc-chhc
Confidence 458999999999999999875 567777766555 44444433 788999999999988 8999999887 6889
Q ss_pred ccchHH--HHHHHHhhcCCCcEEEEEcCCCCCCChh-----------------hHH-----HHHHHHHHHHhcCcEEEEE
Q 008748 233 LQRDGI--LLLELDRLLRPGGYFVYSSPEAYAHDPE-----------------NRR-----IWNAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 233 ~~d~~~--~L~el~RvLkPGG~lvis~P~~~~~~~e-----------------~~~-----~~~~l~~l~~~~gw~vv~~ 288 (555)
.+++.. +++++.++|||||.++++++........ ... .-+++.+++++.||+++..
T Consensus 119 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~ 198 (220)
T 3hnr_A 119 LTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFT 198 (220)
T ss_dssp SCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEE
T ss_pred CChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEe
Confidence 888876 9999999999999999997653211000 000 1157889999999998877
Q ss_pred eeceEEe
Q 008748 289 KDQTVIW 295 (555)
Q Consensus 289 ~~~~~iw 295 (555)
......|
T Consensus 199 ~~~~~~w 205 (220)
T 3hnr_A 199 RLNHFVW 205 (220)
T ss_dssp ECSSSEE
T ss_pred eccceEE
Confidence 6654433
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-14 Score=139.13 Aligned_cols=151 Identities=11% Similarity=0.085 Sum_probs=110.8
Q ss_pred CCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CC
Q 008748 128 FHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IP 202 (555)
Q Consensus 128 f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg--~~ 202 (555)
|........+.+.+.+.. +..+|||||||+|.++..|++. .++++|+++.++..+..+.. ..+ .+
T Consensus 25 ~~~~~~~~~~~~~~~~~~---------~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~ 94 (219)
T 3dlc_A 25 FAPIYPIIAENIINRFGI---------TAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIA-DANLNDR 94 (219)
T ss_dssp TTTHHHHHHHHHHHHHCC---------CEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHH-HTTCTTT
T ss_pred hccccHHHHHHHHHhcCC---------CCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHH-hccccCc
Confidence 334444555555555542 1238999999999999999864 78899998888766664433 333 36
Q ss_pred eEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChh----------------
Q 008748 203 STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE---------------- 266 (555)
Q Consensus 203 v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e---------------- 266 (555)
+.+.++|+..+++++++||+|++.. +++|..++..+++++.++|||||.++++.+........
T Consensus 95 ~~~~~~d~~~~~~~~~~~D~v~~~~-~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (219)
T 3dlc_A 95 IQIVQGDVHNIPIEDNYADLIVSRG-SVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEF 173 (219)
T ss_dssp EEEEECBTTBCSSCTTCEEEEEEES-CGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHH
T ss_pred eEEEEcCHHHCCCCcccccEEEECc-hHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhh
Confidence 8999999999999999999999888 68888999999999999999999999986542110000
Q ss_pred -----hHHHHHHHHHHHHhcCcEEEEEe
Q 008748 267 -----NRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 267 -----~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
....-+++.+++++.||+.+...
T Consensus 174 ~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 201 (219)
T 3dlc_A 174 NRKNISQENVERFQNVLDEIGISSYEII 201 (219)
T ss_dssp HHHHSSHHHHHHHHHHHHHHTCSSEEEE
T ss_pred hhhccccCCHHHHHHHHHHcCCCeEEEE
Confidence 00112578899999999876554
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=143.23 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=109.1
Q ss_pred CccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--Ce
Q 008748 129 HDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PS 203 (555)
Q Consensus 129 ~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~--~v 203 (555)
........+.+.+.+.. .+..+|||||||+|.++..|++. .++++|+++.++..+..+ +...+. ++
T Consensus 18 ~~~~~~~~~~l~~~~~~--------~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~-~~~~~~~~~v 88 (256)
T 1nkv_A 18 NPFTEEKYATLGRVLRM--------KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRR-AEELGVSERV 88 (256)
T ss_dssp SSCCHHHHHHHHHHTCC--------CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHH-HHHTTCTTTE
T ss_pred CCCCHHHHHHHHHhcCC--------CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHH-HHhcCCCcce
Confidence 33445556666666543 23468999999999999988863 688999999888766643 334443 58
Q ss_pred EEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCC--ChhhHH-----------H
Q 008748 204 TLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH--DPENRR-----------I 270 (555)
Q Consensus 204 ~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~--~~e~~~-----------~ 270 (555)
.+.++|+..+++ +++||+|+|.. ++++..++..+++++.|+|||||+++++.+..... ...... .
T Consensus 89 ~~~~~d~~~~~~-~~~fD~V~~~~-~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (256)
T 1nkv_A 89 HFIHNDAAGYVA-NEKCDVAACVG-ATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLT 166 (256)
T ss_dssp EEEESCCTTCCC-SSCEEEEEEES-CGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCC
T ss_pred EEEECChHhCCc-CCCCCEEEECC-ChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCC
Confidence 999999999988 78999999877 58888889999999999999999999987542111 111111 1
Q ss_pred HHHHHHHHHhcCcEEEE
Q 008748 271 WNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 271 ~~~l~~l~~~~gw~vv~ 287 (555)
..++.+++++.||+++.
T Consensus 167 ~~~~~~~l~~aGf~~~~ 183 (256)
T 1nkv_A 167 LPGLVGAFDDLGYDVVE 183 (256)
T ss_dssp HHHHHHHHHTTTBCCCE
T ss_pred HHHHHHHHHHCCCeeEE
Confidence 24778889999997664
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-14 Score=141.41 Aligned_cols=133 Identities=17% Similarity=0.221 Sum_probs=104.2
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
++.+|||||||+|.++..+++. .|+++|+++.++..+..+. ...+. ++.+.++|+..+++++++||+|+|.. +
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~-~ 123 (267)
T 3kkz_A 46 EKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNA-RQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG-A 123 (267)
T ss_dssp TTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHH-HHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS-C
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHH-HHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC-C
Confidence 3469999999999999999874 6889999988876666433 33343 48999999999999889999999888 5
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCC--CChhhHHHH----------HHHHHHHHhcCcEEEEEee
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA--HDPENRRIW----------NAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~--~~~e~~~~~----------~~l~~l~~~~gw~vv~~~~ 290 (555)
+++. ++..+++++.++|||||+++++++.... ........| .++.+++++.||+++....
T Consensus 124 ~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 195 (267)
T 3kkz_A 124 IYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATFI 195 (267)
T ss_dssp GGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEEE
T ss_pred ceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 7777 7888999999999999999998764211 222333344 3788899999999885543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.4e-14 Score=139.78 Aligned_cols=130 Identities=15% Similarity=0.250 Sum_probs=102.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
..+|||||||+|.++..+++. .|+++|+++.++..+..+. ...+. ++.+.++|+..+|+++++||+|+|.. ++
T Consensus 47 ~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l 124 (257)
T 3f4k_A 47 DAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENA-VKANCADRVKGITGSMDNLPFQNEELDLIWSEG-AI 124 (257)
T ss_dssp TCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHH-HHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES-CS
T ss_pred CCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH-HHcCCCCceEEEECChhhCCCCCCCEEEEEecC-hH
Confidence 458999999999999999864 7889999988886666433 34443 38999999999999999999999888 57
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCCCCC--CChhhHHHH----------HHHHHHHHhcCcEEEEE
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYA--HDPENRRIW----------NAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~--~~~e~~~~~----------~~l~~l~~~~gw~vv~~ 288 (555)
++. +...+++++.++|||||+++++++.... ........| .++.+++++.||+++..
T Consensus 125 ~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (257)
T 3f4k_A 125 YNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAH 193 (257)
T ss_dssp CCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEE
T ss_pred hhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEE
Confidence 777 7888999999999999999998854221 122222333 36788999999998863
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-14 Score=144.68 Aligned_cols=135 Identities=16% Similarity=0.183 Sum_probs=104.0
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
+..+|||||||+|.++..|++. .++++|+++.++..+..... ..+ .++.+.++|+..+|+++++||+|++.. +
T Consensus 82 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~ 159 (297)
T 2o57_A 82 RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNN-QAGLADNITVKYGSFLEIPCEDNSYDFIWSQD-A 159 (297)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH-HHTCTTTEEEEECCTTSCSSCTTCEEEEEEES-C
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHH-hcCCCcceEEEEcCcccCCCCCCCEeEEEecc-h
Confidence 3468999999999999998863 68899998888766654333 333 358999999999999999999999887 6
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCC--hhhHHH-----------HHHHHHHHHhcCcEEEEEeec
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD--PENRRI-----------WNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~--~e~~~~-----------~~~l~~l~~~~gw~vv~~~~~ 291 (555)
++|..++..+++++.|+|||||+++++++...... ...... -.++.+++++.||+++.....
T Consensus 160 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 160 FLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSR 234 (297)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred hhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEEEC
Confidence 88888899999999999999999999875432111 111111 236778899999998876554
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.8e-14 Score=138.96 Aligned_cols=135 Identities=15% Similarity=0.165 Sum_probs=103.8
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
+..+|||||||+|.++..+++. .++++|+++.++..+..........++.+.++|+..+++++++||+|+|.. +++|
T Consensus 21 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~-~l~~ 99 (239)
T 1xxl_A 21 AEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRY-AAHH 99 (239)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEES-CGGG
T ss_pred CCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECC-chhh
Confidence 3468999999999999999874 688999998888666644433333468999999999999999999999887 5888
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHH-----------------HHHHHHHHHHhcCcEEEEEeec
Q 008748 233 LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRR-----------------IWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~-----------------~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
..++..++.++.|+|||||+++++.+..... ..... ...++.+++++.||+++.....
T Consensus 100 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 100 FSDVRKAVREVARVLKQDGRFLLVDHYAPED-PVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKW 174 (239)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEECBCSS-HHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccCHHHHHHHHHHHcCCCcEEEEEEcCCCCC-hhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEEEEee
Confidence 8899999999999999999999976543111 11100 1236778899999987765543
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.56 E-value=6.6e-15 Score=143.02 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=98.2
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
.+|||||||+|.++..|++. .++++|+++.++ +.|+++.. ++.+.++|+..+ +++++||+|+|.. +++|.
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~-----~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~-~l~~~ 116 (250)
T 2p7i_A 44 GNLLELGSFKGDFTSRLQEHFNDITCVEASEEAI-----SHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTH-VLEHI 116 (250)
T ss_dssp SCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHH-----HHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEES-CGGGC
T ss_pred CcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHH-----HHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhh-HHHhh
Confidence 57999999999999999875 677777766555 44444433 788999998877 4678999999888 69999
Q ss_pred cchHHHHHHHH-hhcCCCcEEEEEcCCCCCC-------------C----hhh-------HHHHHHHHHHHHhcCcEEEEE
Q 008748 234 QRDGILLLELD-RLLRPGGYFVYSSPEAYAH-------------D----PEN-------RRIWNAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 234 ~d~~~~L~el~-RvLkPGG~lvis~P~~~~~-------------~----~e~-------~~~~~~l~~l~~~~gw~vv~~ 288 (555)
+++..+++++. |+|||||++++++|..... . ... .-.-.++.+++++.||+++..
T Consensus 117 ~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 196 (250)
T 2p7i_A 117 DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYR 196 (250)
T ss_dssp SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred cCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEE
Confidence 99999999999 9999999999998764210 0 000 001247889999999999877
Q ss_pred ee
Q 008748 289 KD 290 (555)
Q Consensus 289 ~~ 290 (555)
..
T Consensus 197 ~~ 198 (250)
T 2p7i_A 197 SG 198 (250)
T ss_dssp EE
T ss_pred ee
Confidence 54
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-14 Score=136.90 Aligned_cols=134 Identities=16% Similarity=0.133 Sum_probs=104.9
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
..+|||+|||+|.++..+++ ..++++|+++.++..+..+.......++.+..+|...+++++++||+|+++. ++
T Consensus 38 ~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l 116 (219)
T 3dh0_A 38 GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAF-TF 116 (219)
T ss_dssp TCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEES-CG
T ss_pred CCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeeh-hh
Confidence 46899999999999988875 2688999999888777655444333468999999999999989999999888 68
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCCCCCC----ChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH----DPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~----~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
++..++..+++++.++|+|||.++++.+..... .........++.+++++.||+++....
T Consensus 117 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 180 (219)
T 3dh0_A 117 HELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVE 180 (219)
T ss_dssp GGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEe
Confidence 888899999999999999999999987442111 001111235788999999999887654
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-14 Score=140.60 Aligned_cols=131 Identities=22% Similarity=0.264 Sum_probs=100.2
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC---CCeEEEEeCCCCCCCCCCCccEEEeccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg---~~v~~~~~d~~~Lp~~d~sFDlVv~s~~ 228 (555)
+..+|||||||+|.++..+++. .|+++|+++.++ +.|+++. .++.+.++|...+++++++||+|++..
T Consensus 55 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-----~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~- 128 (266)
T 3ujc_A 55 ENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIV-----NMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRD- 128 (266)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHH-----HHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEES-
T ss_pred CCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHH-----HHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHH-
Confidence 3469999999999999998864 577777766555 4555543 578999999999999999999999887
Q ss_pred ccccc--cchHHHHHHHHhhcCCCcEEEEEcCCCCC---CChhhHH----------HHHHHHHHHHhcCcEEEEEeec
Q 008748 229 RIDWL--QRDGILLLELDRLLRPGGYFVYSSPEAYA---HDPENRR----------IWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 229 ~l~~~--~d~~~~L~el~RvLkPGG~lvis~P~~~~---~~~e~~~----------~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
+++|. .+...+++++.|+|||||.++++++.... ....... ...++.+++++.||+++.....
T Consensus 129 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 206 (266)
T 3ujc_A 129 AILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKDL 206 (266)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEEeC
Confidence 68888 78888999999999999999998753211 1111111 1247888999999998876544
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-14 Score=141.93 Aligned_cols=131 Identities=16% Similarity=0.242 Sum_probs=101.1
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHc--CCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~r--g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
+..+|||||||+|.++..+++. .++++|+++.++. .|+++ ..++.+..+|+..+++++++||+|+|.. +
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~-----~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~ 117 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLT-----EAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSL-A 117 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHH-----HHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEES-C
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHH-----HHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEch-h
Confidence 4579999999999999999875 5677777766554 44443 4578999999999999889999999988 6
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCC---------CChhh----------------------------HHHHH
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA---------HDPEN----------------------------RRIWN 272 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~---------~~~e~----------------------------~~~~~ 272 (555)
+++.+++..+++++.++|||||.++++.+.... ..... .....
T Consensus 118 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 197 (253)
T 3g5l_A 118 LHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVT 197 (253)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHH
T ss_pred hhhhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCHH
Confidence 889999999999999999999999998543210 00000 00235
Q ss_pred HHHHHHHhcCcEEEEEeec
Q 008748 273 AMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 273 ~l~~l~~~~gw~vv~~~~~ 291 (555)
++.++++++||+++.....
T Consensus 198 ~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 198 TYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp HHHHHHHHTTEEEEEEECC
T ss_pred HHHHHHHHcCCeeeeeecC
Confidence 7889999999999876654
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-14 Score=137.21 Aligned_cols=130 Identities=16% Similarity=0.104 Sum_probs=101.0
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 234 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~ 234 (555)
.+|||||||+|.++..|++. .++++|+++.++ +.++++..++.+.++|+..+++++++||+|++.. +++|..
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~-----~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~~~ 116 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASLGHQIEGLEPATRLV-----ELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWY-SLIHMG 116 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHH-----HHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEES-SSTTCC
T ss_pred CeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHH-----HHHHHhCCCCeEEeCcccccccCCCCeEEEEehh-hHhcCC
Confidence 57999999999999999875 567777665544 5566667789999999999998889999999988 577775
Q ss_pred --chHHHHHHHHhhcCCCcEEEEEcCCCCCCC-----h--hhHHHHHHHHHHHHhcCcEEEEEeece
Q 008748 235 --RDGILLLELDRLLRPGGYFVYSSPEAYAHD-----P--ENRRIWNAMYDLLKSMCWKIVSKKDQT 292 (555)
Q Consensus 235 --d~~~~L~el~RvLkPGG~lvis~P~~~~~~-----~--e~~~~~~~l~~l~~~~gw~vv~~~~~~ 292 (555)
+...+++++.++|||||+++++.+...... . .......++.+++++.||+++......
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 117 PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDP 183 (203)
T ss_dssp TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence 778899999999999999999875532100 0 000123578899999999999776553
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.5e-14 Score=140.79 Aligned_cols=136 Identities=18% Similarity=0.323 Sum_probs=105.2
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
+..+|||||||+|.++..+++. .++++|+++.++..+..+.......++.+...|+..+++++++||+|++.. ++
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l 115 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCF-VL 115 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEES-CG
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEec-hh
Confidence 3469999999999999998853 688999998887666644433323468999999999999999999999888 68
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCCCCC-----CChhhHHHH-----------------HHHHHHHHhcCcEEEEE
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-----HDPENRRIW-----------------NAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~-----~~~e~~~~~-----------------~~l~~l~~~~gw~vv~~ 288 (555)
++.+++..++.++.++|||||++++..+.... ........| .++..++++.||+++..
T Consensus 116 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~v~~ 195 (276)
T 3mgg_A 116 EHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRV 195 (276)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEEEEE
T ss_pred hhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCeEEE
Confidence 99999999999999999999999998754211 111111222 36778899999998876
Q ss_pred eec
Q 008748 289 KDQ 291 (555)
Q Consensus 289 ~~~ 291 (555)
+..
T Consensus 196 ~~~ 198 (276)
T 3mgg_A 196 EPR 198 (276)
T ss_dssp EEE
T ss_pred eeE
Confidence 654
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-14 Score=135.77 Aligned_cols=134 Identities=19% Similarity=0.283 Sum_probs=100.3
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC------CeEEEEeCCCCCCCCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI------PSTLGVLGTKRLPYPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~------~v~~~~~d~~~Lp~~d~sFDlVv~s~ 227 (555)
..+|||+|||+|.++..+++. .++++|+++.++..++.. +...+. ++.+...|...+++++++||+|+++.
T Consensus 31 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 109 (235)
T 3sm3_A 31 DDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETA-ARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQA 109 (235)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH-TTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEES
T ss_pred CCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHH-HHhcCCccccCcceEEEEecccccCCCCCceeEEEEcc
Confidence 458999999999999999875 677787777666444422 222232 46889999999999889999999887
Q ss_pred cccccccchH---HHHHHHHhhcCCCcEEEEEcCCCCCCChhhHH--------------------------------HHH
Q 008748 228 CRIDWLQRDG---ILLLELDRLLRPGGYFVYSSPEAYAHDPENRR--------------------------------IWN 272 (555)
Q Consensus 228 ~~l~~~~d~~---~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~--------------------------------~~~ 272 (555)
++++..++. .+++++.++|||||+++++++........... ..+
T Consensus 110 -~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (235)
T 3sm3_A 110 -FLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEK 188 (235)
T ss_dssp -CGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHH
T ss_pred -hhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCHH
Confidence 688888877 89999999999999999987543211111100 134
Q ss_pred HHHHHHHhcCcEEEEEeec
Q 008748 273 AMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 273 ~l~~l~~~~gw~vv~~~~~ 291 (555)
++.+++++.||+++.....
T Consensus 189 ~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 189 ELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp HHHHHHHTTTEEEEEEEEE
T ss_pred HHHHHHHHcCCEEEEEEec
Confidence 7889999999999877654
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-14 Score=139.50 Aligned_cols=129 Identities=23% Similarity=0.286 Sum_probs=99.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHc--CCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~r--g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|||||||+|.++..+++. .++++|+++.++ +.++++ ..++.+.++|+..+++++++||+|++.. +++
T Consensus 54 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~-----~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~ 127 (242)
T 3l8d_A 54 EAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMI-----QKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAIN-SLE 127 (242)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHH-----HHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEES-CTT
T ss_pred CCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHH-----HHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcC-hHh
Confidence 358999999999999999975 566777666554 445444 4578999999999999899999999887 688
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhh--H-----------HHHHHHHHHHHhcCcEEEEEee
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPEN--R-----------RIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~--~-----------~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
|.+++..++.++.++|+|||+++++.+......... . ..-.++.+++++.||+++....
T Consensus 128 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 199 (242)
T 3l8d_A 128 WTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIG 199 (242)
T ss_dssp SSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred hccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEeec
Confidence 889999999999999999999999875431110000 0 0113788999999999986554
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.9e-14 Score=143.36 Aligned_cols=135 Identities=13% Similarity=0.083 Sum_probs=104.7
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
+..+|||||||+|.++..|++. .|+++|+++.++..+..+. ...+. ++.+..+|+..+|+++++||+|++.. +
T Consensus 117 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~-~ 194 (312)
T 3vc1_A 117 PDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRA-RELRIDDHVRSRVCNMLDTPFDKGAVTASWNNE-S 194 (312)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HHTTCTTTEEEEECCTTSCCCCTTCEEEEEEES-C
T ss_pred CCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH-HHcCCCCceEEEECChhcCCCCCCCEeEEEECC-c
Confidence 3469999999999999998863 7889999988886666443 34443 58999999999999999999999887 5
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCC---ChhhHH-----------HHHHHHHHHHhcCcEEEEEeece
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH---DPENRR-----------IWNAMYDLLKSMCWKIVSKKDQT 292 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~---~~e~~~-----------~~~~l~~l~~~~gw~vv~~~~~~ 292 (555)
+++. +...++.++.|+|||||+++++++..... ...... ...++.+++++.||+++..+...
T Consensus 195 l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 195 TMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVDLT 270 (312)
T ss_dssp GGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEEECH
T ss_pred hhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEEeCC
Confidence 7877 58889999999999999999987543221 111111 12478899999999998877654
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-14 Score=139.90 Aligned_cols=125 Identities=17% Similarity=0.199 Sum_probs=94.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC--CCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL--PYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L--p~~d~sFDlVv~s~~~l~ 231 (555)
..+|||||||+|.++..+++. .++++|+++.++ +.++++ +.+..+|...+ ++++++||+|+|.. +++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~-----~~a~~~---~~~~~~d~~~~~~~~~~~~fD~i~~~~-~l~ 112 (240)
T 3dli_A 42 CRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMI-----KFCEGK---FNVVKSDAIEYLKSLPDKYLDGVMISH-FVE 112 (240)
T ss_dssp CSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHH-----HHHHTT---SEEECSCHHHHHHTSCTTCBSEEEEES-CGG
T ss_pred CCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHH-----HHHHhh---cceeeccHHHHhhhcCCCCeeEEEECC-chh
Confidence 468999999999999998874 567777665544 555544 77888887665 78889999999887 688
Q ss_pred cccch--HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHH-----------HHHHHHHHHHhcCcEEEEEee
Q 008748 232 WLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRR-----------IWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 232 ~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~-----------~~~~l~~l~~~~gw~vv~~~~ 290 (555)
|..++ ..+++++.|+|||||+++++++..... ..... .-.++.+++++.||+++....
T Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 183 (240)
T 3dli_A 113 HLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL-YSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEF 183 (240)
T ss_dssp GSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH-HHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred hCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh-HHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEE
Confidence 88855 889999999999999999988764211 00000 114788999999999876544
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.52 E-value=9.5e-14 Score=139.92 Aligned_cols=102 Identities=14% Similarity=0.218 Sum_probs=85.9
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
++.+|||||||+|.++..|++. .++++|+++.++..+..+ +...+.++.+.++|+..++++ ++||+|++.. +
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~-~ 98 (284)
T 3gu3_A 22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAREL-FRLLPYDSEFLEGDATEIELN-DKYDIAICHA-F 98 (284)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHH-HHSSSSEEEEEESCTTTCCCS-SCEEEEEEES-C
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHhcCCceEEEEcchhhcCcC-CCeeEEEECC-h
Confidence 3469999999999999999863 578888888877665533 333445789999999999885 6899999888 6
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
+++.+++..+++++.++|||||++++..|.
T Consensus 99 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 99 LLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp GGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 889999999999999999999999999887
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-14 Score=141.19 Aligned_cols=137 Identities=16% Similarity=0.181 Sum_probs=101.2
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
+..+|||||||+|.++..|++. .++++|+++.++..+..+........+.+..+|+..+++++++||+|++.. +++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQW-VIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEES-CGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcc-hhh
Confidence 3569999999999999998864 578888887777555433222113357888999988988888999999887 688
Q ss_pred cccchH--HHHHHHHhhcCCCcEEEEEcCCCCC------CChhhHHHHHHHHHHHHhcCcEEEEEeece
Q 008748 232 WLQRDG--ILLLELDRLLRPGGYFVYSSPEAYA------HDPENRRIWNAMYDLLKSMCWKIVSKKDQT 292 (555)
Q Consensus 232 ~~~d~~--~~L~el~RvLkPGG~lvis~P~~~~------~~~e~~~~~~~l~~l~~~~gw~vv~~~~~~ 292 (555)
+.+++. .++.++.++|||||+++++++.... ..........++.+++++.||+++......
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 226 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQE 226 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECC
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeecC
Confidence 887754 7999999999999999997753211 000000124578889999999988776543
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.7e-14 Score=141.64 Aligned_cols=101 Identities=18% Similarity=0.247 Sum_probs=80.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC------CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCCCCCCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~------~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~ 228 (555)
+.+|||||||+|.++..|+++ +|+|+|+++.++..++.+..... ..++.+.++|+..+|++ .||+|++.+
T Consensus 71 ~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~~~- 147 (261)
T 4gek_A 71 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF- 147 (261)
T ss_dssp TCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEEES-
T ss_pred CCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccceeee-
Confidence 458999999999999999863 57888888888876664433222 24689999999999875 599999887
Q ss_pred ccccccch--HHHHHHHHhhcCCCcEEEEEcCC
Q 008748 229 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 229 ~l~~~~d~--~~~L~el~RvLkPGG~lvis~P~ 259 (555)
++||+++. ..+|++++|+|||||.|+++.+.
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~ 180 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 180 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred eeeecCchhHhHHHHHHHHHcCCCcEEEEEecc
Confidence 68888655 45899999999999999998643
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.51 E-value=6e-14 Score=136.28 Aligned_cols=101 Identities=13% Similarity=0.276 Sum_probs=80.2
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
+..+|||||||+|.++..+++. .++++|+++.++..+..+. .. ..++.+..+|+..++++ ++||+|++.. ++
T Consensus 44 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-~~-~~~~~~~~~d~~~~~~~-~~fD~v~~~~-~l 119 (234)
T 3dtn_A 44 ENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRF-RG-NLKVKYIEADYSKYDFE-EKYDMVVSAL-SI 119 (234)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHT-CS-CTTEEEEESCTTTCCCC-SCEEEEEEES-CG
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhh-cc-CCCEEEEeCchhccCCC-CCceEEEEeC-cc
Confidence 4479999999999999998864 5778877776664443221 11 12789999999999988 8999999987 68
Q ss_pred ccccchH--HHHHHHHhhcCCCcEEEEEcCC
Q 008748 231 DWLQRDG--ILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 231 ~~~~d~~--~~L~el~RvLkPGG~lvis~P~ 259 (555)
++..++. .+++++.|+|||||+++++++.
T Consensus 120 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 150 (234)
T 3dtn_A 120 HHLEDEDKKELYKRSYSILKESGIFINADLV 150 (234)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 8887765 4999999999999999998754
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.8e-14 Score=140.04 Aligned_cols=135 Identities=19% Similarity=0.250 Sum_probs=103.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCC-CCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLP-YPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp-~~d~sFDlVv~s~~~l 230 (555)
+.+|||||||+|.++..|++. .++++|+++.++..+..+. ...+ .++.+..+|+..++ +++++||+|+|.. ++
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~-~l 146 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAA-EAKGVSDNMQFIHCAAQDVASHLETPVDLILFHA-VL 146 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-HC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEES-CG
T ss_pred CCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-HhcCCCcceEEEEcCHHHhhhhcCCCceEEEECc-hh
Confidence 468999999999999999875 6888888887776665333 2333 35889999998887 7789999999887 68
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCCCCCC------------------C-------hhhHHHHHHHHHHHHhcCcEE
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH------------------D-------PENRRIWNAMYDLLKSMCWKI 285 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~------------------~-------~e~~~~~~~l~~l~~~~gw~v 285 (555)
+|.+++..+++++.++|||||++++..+..... . ......-.++.+++++.||++
T Consensus 147 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~v 226 (285)
T 4htf_A 147 EWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGWQI 226 (285)
T ss_dssp GGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTCEE
T ss_pred hcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCCce
Confidence 999999999999999999999999987532100 0 000001247889999999999
Q ss_pred EEEeece
Q 008748 286 VSKKDQT 292 (555)
Q Consensus 286 v~~~~~~ 292 (555)
+......
T Consensus 227 ~~~~~~~ 233 (285)
T 4htf_A 227 MGKTGVR 233 (285)
T ss_dssp EEEEEES
T ss_pred eeeeeEE
Confidence 9777653
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.8e-13 Score=131.58 Aligned_cols=119 Identities=18% Similarity=0.313 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCC
Q 008748 133 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT 210 (555)
Q Consensus 133 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~ 210 (555)
..+.+.+.+++... ..+..+|||+|||+|.++..+++. .++++|+++.++..+..+. ...+.++.+.++|+
T Consensus 21 ~~~~~~~~~~l~~~------~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~d~ 93 (246)
T 1y8c_A 21 KKWSDFIIEKCVEN------NLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKF-RSQGLKPRLACQDI 93 (246)
T ss_dssp HHHHHHHHHHHHTT------TCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHH-HHTTCCCEEECCCG
T ss_pred HHHHHHHHHHHHHh------CCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHH-hhcCCCeEEEeccc
Confidence 44555556655432 123468999999999999999874 6888999888876666443 33445789999999
Q ss_pred CCCCCCCCCccEEEecccccccc---cchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 211 KRLPYPSRSFELAHCSRCRIDWL---QRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 211 ~~Lp~~d~sFDlVv~s~~~l~~~---~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
..++++ ++||+|++...+++|. .+...+++++.++|+|||.+++..+.
T Consensus 94 ~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 94 SNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp GGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred ccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 888887 8899999876358887 56688999999999999999997653
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=132.11 Aligned_cols=128 Identities=13% Similarity=0.170 Sum_probs=95.6
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC-CCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
..+|||||||+|.++..|++. .++++|+++.++ +.+++.+ .++.+..+|+..+ +++++||+|+|+. +++|
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~-----~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~-~l~~ 119 (218)
T 3ou2_A 47 RGDVLELASGTGYWTRHLSGLADRVTALDGSAEMI-----AEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAH-WLAH 119 (218)
T ss_dssp CSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHH-----HHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEES-CGGG
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHH-----HHHHhcCCCCeEEEecccccC-CCCCceeEEEEec-hhhc
Confidence 358999999999999999864 567777766555 4444455 6789999999888 7789999999988 6888
Q ss_pred ccch--HHHHHHHHhhcCCCcEEEEEcCCCCCCChhh-------------------------HHHHHHHHHHHHhcCcEE
Q 008748 233 LQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPEN-------------------------RRIWNAMYDLLKSMCWKI 285 (555)
Q Consensus 233 ~~d~--~~~L~el~RvLkPGG~lvis~P~~~~~~~e~-------------------------~~~~~~l~~l~~~~gw~v 285 (555)
.+++ ..+++++.++|||||.++++++......... ...-.++.+++++.||++
T Consensus 120 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v 199 (218)
T 3ou2_A 120 VPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSC 199 (218)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEE
Confidence 8876 7799999999999999999875431000000 001247889999999996
Q ss_pred EEEee
Q 008748 286 VSKKD 290 (555)
Q Consensus 286 v~~~~ 290 (555)
...+.
T Consensus 200 ~~~~~ 204 (218)
T 3ou2_A 200 SVDEV 204 (218)
T ss_dssp EEEEE
T ss_pred Eeeec
Confidence 65443
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=131.09 Aligned_cols=150 Identities=15% Similarity=0.164 Sum_probs=102.0
Q ss_pred ccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC-----
Q 008748 130 DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG----- 200 (555)
Q Consensus 130 ~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg----- 200 (555)
.......+.+.+.+.. .+..+|||||||+|.++..|++. .++++|+++.++..+..+......
T Consensus 12 ~~~~~~~~~l~~~l~~--------~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~ 83 (219)
T 3jwg_A 12 NLNQQRLGTVVAVLKS--------VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQR 83 (219)
T ss_dssp CHHHHHHHHHHHHHHH--------TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHH
T ss_pred cchHHHHHHHHHHHhh--------cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccC
Confidence 3444444555555542 22468999999999999999863 688888888877666544322211
Q ss_pred CCeEEEEeCCCCCCCCCCCccEEEecccccccccch--HHHHHHHHhhcCCCcEEEEEcCCCC----CCCh---------
Q 008748 201 IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAY----AHDP--------- 265 (555)
Q Consensus 201 ~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~--~~~L~el~RvLkPGG~lvis~P~~~----~~~~--------- 265 (555)
.++.+..+|+..+++++++||+|+|.. +++|..++ ..+++++.++|||||+++++....+ ....
T Consensus 84 ~~v~~~~~d~~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~ 162 (219)
T 3jwg_A 84 KRISLFQSSLVYRDKRFSGYDAATVIE-VIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDH 162 (219)
T ss_dssp TTEEEEECCSSSCCGGGTTCSEEEEES-CGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCC
T ss_pred cceEEEeCcccccccccCCCCEEEEHH-HHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCc
Confidence 168999999988888788999999888 68888766 6799999999999996665432211 0000
Q ss_pred ---hhHHHH-HHHHHHHHhcCcEEEEE
Q 008748 266 ---ENRRIW-NAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 266 ---e~~~~~-~~l~~l~~~~gw~vv~~ 288 (555)
.....+ .-+.+++++.||++...
T Consensus 163 ~~~~~~~~l~~~~~~l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 163 RFEWTRKEFQTWAVKVAEKYGYSVRFL 189 (219)
T ss_dssp TTSBCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred eeeecHHHHHHHHHHHHHHCCcEEEEE
Confidence 011111 23448899999977643
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.48 E-value=8.4e-14 Score=137.06 Aligned_cols=99 Identities=16% Similarity=0.189 Sum_probs=82.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
..+|||||||+|.++..+++. .++++|+++.++..+..+. .....++.+.++|...+++++++||+|++.. +++|.
T Consensus 40 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~~ 117 (263)
T 2yqz_A 40 EPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLPDESVHGVIVVH-LWHLV 117 (263)
T ss_dssp CCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSCTTCEEEEEEES-CGGGC
T ss_pred CCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCCCCCeeEEEECC-chhhc
Confidence 468999999999999999875 5778887776665444322 2224578999999999999889999999887 68999
Q ss_pred cchHHHHHHHHhhcCCCcEEEEE
Q 008748 234 QRDGILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 234 ~d~~~~L~el~RvLkPGG~lvis 256 (555)
++...++.++.++|||||+++++
T Consensus 118 ~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 118 PDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHCCCCcEEEEE
Confidence 99999999999999999999987
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.8e-14 Score=137.21 Aligned_cols=98 Identities=19% Similarity=0.313 Sum_probs=82.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|||||||+|.++..+++. .++++|+++.++ +.++++..++.+.++|+..++ ++++||+|+++. +++
T Consensus 34 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~-----~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~-~l~ 106 (259)
T 2p35_A 34 VLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDML-----EKAADRLPNTNFGKADLATWK-PAQKADLLYANA-VFQ 106 (259)
T ss_dssp CSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHH-----HHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEES-CGG
T ss_pred CCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHH-----HHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeC-chh
Confidence 468999999999999988753 677887776655 444455667899999999888 778999999887 699
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
|.++...++.++.++|||||+++++.|..
T Consensus 107 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 135 (259)
T 2p35_A 107 WVPDHLAVLSQLMDQLESGGVLAVQMPDN 135 (259)
T ss_dssp GSTTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred hCCCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 99999999999999999999999998754
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.48 E-value=6e-14 Score=134.33 Aligned_cols=128 Identities=17% Similarity=0.207 Sum_probs=95.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
..+|||||||+|.++..|++. .++++|+++.++..+. ++. ++.+..+|+..++ ++++||+|+|+. ++++.
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~-----~~~-~~~~~~~d~~~~~-~~~~fD~v~~~~-~l~~~ 115 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEAS-----RRL-GRPVRTMLFHQLD-AIDAYDAVWAHA-CLLHV 115 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-----HHH-TSCCEECCGGGCC-CCSCEEEEEECS-CGGGS
T ss_pred CCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHH-----Hhc-CCceEEeeeccCC-CCCcEEEEEecC-chhhc
Confidence 468999999999999999875 5777777776654443 331 4567788888888 778999999988 57887
Q ss_pred c--chHHHHHHHHhhcCCCcEEEEEcCCCCCCChh------hHHHHHHHHHHHHhcC-cEEEEEeec
Q 008748 234 Q--RDGILLLELDRLLRPGGYFVYSSPEAYAHDPE------NRRIWNAMYDLLKSMC-WKIVSKKDQ 291 (555)
Q Consensus 234 ~--d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e------~~~~~~~l~~l~~~~g-w~vv~~~~~ 291 (555)
. +...+++++.++|||||+++++.+........ ....-+++.+++++.| |+++.....
T Consensus 116 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~ 182 (211)
T 3e23_A 116 PRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESS 182 (211)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence 6 66789999999999999999987653211000 0012357888999999 998876654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.48 E-value=8e-14 Score=147.01 Aligned_cols=135 Identities=18% Similarity=0.181 Sum_probs=103.4
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHc----C----CCeEEEEeCCCCC------CC
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER----G----IPSTLGVLGTKRL------PY 215 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~r----g----~~v~~~~~d~~~L------p~ 215 (555)
+..+|||||||+|.++..|++. .|+++|+++.++..+..+..... | .++.+.++|+..+ ++
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 3469999999999998888753 68899998887766654333221 3 5789999999887 89
Q ss_pred CCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhH----HH----------HHHHHHHHHhc
Q 008748 216 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR----RI----------WNAMYDLLKSM 281 (555)
Q Consensus 216 ~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~----~~----------~~~l~~l~~~~ 281 (555)
++++||+|++.. ++++.+++..+++++.|+|||||+|+++.+.......... .. +.++.+++++.
T Consensus 163 ~~~~fD~V~~~~-~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 241 (383)
T 4fsd_A 163 PDSSVDIVISNC-VCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEA 241 (383)
T ss_dssp CTTCEEEEEEES-CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHT
T ss_pred CCCCEEEEEEcc-chhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHC
Confidence 999999999887 6899999999999999999999999998654322211111 11 26788999999
Q ss_pred CcEEEEEee
Q 008748 282 CWKIVSKKD 290 (555)
Q Consensus 282 gw~vv~~~~ 290 (555)
||+.+....
T Consensus 242 GF~~v~~~~ 250 (383)
T 4fsd_A 242 GFRDVRLVS 250 (383)
T ss_dssp TCCCEEEEE
T ss_pred CCceEEEEe
Confidence 998775544
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-13 Score=137.72 Aligned_cols=101 Identities=20% Similarity=0.226 Sum_probs=82.6
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC----CCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG----IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg----~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
.+|||||||+|.++..|++. .|+++|+++.++..+..+. ...+ .++.+.++|+..+++ +++||+|+|+..++
T Consensus 84 ~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~ 161 (299)
T 3g2m_A 84 GPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRL-AEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSI 161 (299)
T ss_dssp SCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHH-HTSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHH
T ss_pred CcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHH-hhcccccccceEEEeCchhcCCc-CCCcCEEEECCccc
Confidence 38999999999999999875 7888988888776665333 3333 578999999999988 58899999876678
Q ss_pred ccccc--hHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 231 DWLQR--DGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 231 ~~~~d--~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
++... ...+|+++.++|||||+|++.++.
T Consensus 162 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 162 NELDEADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp TTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 87753 477999999999999999998755
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=132.36 Aligned_cols=126 Identities=17% Similarity=0.213 Sum_probs=98.5
Q ss_pred CCEEEEECCCCcHHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 235 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d 235 (555)
..+|||||||+|.++..++.. +++|+++.++ +.++++ ++.+..+|+..+++++++||+|++.. ++++.++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~--~~vD~s~~~~-----~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~~~~ 117 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK--IGVEPSERMA-----EIARKR--GVFVLKGTAENLPLKDESFDFALMVT-TICFVDD 117 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC--EEEESCHHHH-----HHHHHT--TCEEEECBTTBCCSCTTCEEEEEEES-CGGGSSC
T ss_pred CCcEEEeCCCCCHHHHHHHHH--hccCCCHHHH-----HHHHhc--CCEEEEcccccCCCCCCCeeEEEEcc-hHhhccC
Confidence 358999999999999999886 7888777665 444444 67888899989998888999999888 6888899
Q ss_pred hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhh---------------HHHHHHHHHHHHhcCcEEEEEeec
Q 008748 236 DGILLLELDRLLRPGGYFVYSSPEAYAHDPEN---------------RRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 236 ~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~---------------~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
+..++.++.++|+|||.++++.+......... .....++.+++++.||+++.....
T Consensus 118 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 118 PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 99999999999999999999876532110000 002357889999999998876544
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=131.83 Aligned_cols=102 Identities=18% Similarity=0.301 Sum_probs=83.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccc--cc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR--ID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~--l~ 231 (555)
..+|||+|||+|.++..++.. .++++|+++.++..+..+. ...+.++.+..+|+..+++++++||+|+++. + ++
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~-~~~~~ 116 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYA-KSRESNVEFIVGDARKLSFEDKTFDYVIFID-SIVHF 116 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-HHTTCCCEEEECCTTSCCSCTTCEEEEEEES-CGGGC
T ss_pred CCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHH-HhcCCCceEEECchhcCCCCCCcEEEEEEcC-chHhC
Confidence 468999999999999998875 6889999888776665433 3445778999999998888888999999886 4 44
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
+..+...++.++.++|+|||.+++..+.
T Consensus 117 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 117 EPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 4456778999999999999999998764
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-13 Score=137.26 Aligned_cols=127 Identities=12% Similarity=0.205 Sum_probs=96.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
..+|||||||+|.++..+++. .|+++|+++.++ +.++++..++.+.++|+..+++ +++||+|++.. +++|.
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~-----~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~-~l~~~ 130 (279)
T 3ccf_A 58 GEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMI-----EKARQNYPHLHFDVADARNFRV-DKPLDAVFSNA-MLHWV 130 (279)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHH-----HHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEES-CGGGC
T ss_pred CCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHH-----HHHHhhCCCCEEEECChhhCCc-CCCcCEEEEcc-hhhhC
Confidence 468999999999999999863 577777766655 4445555678899999999987 47999999887 69999
Q ss_pred cchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHH-----------------------HHHHHHHHHHhcCcEEEEEee
Q 008748 234 QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRR-----------------------IWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 234 ~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~-----------------------~~~~l~~l~~~~gw~vv~~~~ 290 (555)
.++..++.++.|+|||||+++++.+.... ...... .-.++.+++++.||+++....
T Consensus 131 ~d~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 209 (279)
T 3ccf_A 131 KEPEAAIASIHQALKSGGRFVAEFGGKGN-IKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYAAL 209 (279)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECTTT-THHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEEEEEEE
T ss_pred cCHHHHHHHHHHhcCCCcEEEEEecCCcc-hHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEEEEEEE
Confidence 99999999999999999999998765321 111111 123567788888988775543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-13 Score=136.08 Aligned_cols=132 Identities=12% Similarity=0.152 Sum_probs=97.2
Q ss_pred CCCEEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
+..+|||||||+|.++..+++ ..|+++|+++.++..+..+. .+.+ .++.+..+|...+| ++||+|++.. +
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~-~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~-~ 138 (287)
T 1kpg_A 64 PGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLV-ANSENLRSKRVLLAGWEQFD---EPVDRIVSIG-A 138 (287)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HTCCCCSCEEEEESCGGGCC---CCCSEEEEES-C
T ss_pred CcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH-HhcCCCCCeEEEECChhhCC---CCeeEEEEeC-c
Confidence 346899999999999999884 36888888887776555333 2233 36888899987776 7899999888 5
Q ss_pred cccc--cchHHHHHHHHhhcCCCcEEEEEcCCCCCCCh---------hhH-H----------------HHHHHHHHHHhc
Q 008748 230 IDWL--QRDGILLLELDRLLRPGGYFVYSSPEAYAHDP---------ENR-R----------------IWNAMYDLLKSM 281 (555)
Q Consensus 230 l~~~--~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~---------e~~-~----------------~~~~l~~l~~~~ 281 (555)
++|. .+...+++++.|+|||||.+++..+....... ... . ...++.+++++.
T Consensus 139 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~a 218 (287)
T 1kpg_A 139 FEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASAN 218 (287)
T ss_dssp GGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTT
T ss_pred hhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHHHhC
Confidence 8887 56788999999999999999997754311000 000 0 124778889999
Q ss_pred CcEEEEEeec
Q 008748 282 CWKIVSKKDQ 291 (555)
Q Consensus 282 gw~vv~~~~~ 291 (555)
||+++.....
T Consensus 219 Gf~~~~~~~~ 228 (287)
T 1kpg_A 219 GFTVTRVQSL 228 (287)
T ss_dssp TCEEEEEEEC
T ss_pred CcEEEEEEeC
Confidence 9998876654
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=135.04 Aligned_cols=96 Identities=20% Similarity=0.271 Sum_probs=78.3
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
..+|||||||+|.++..|++. .++++|+++.++ +.|+++..++.+.++|+..+++ +++||+|+|...+++|.
T Consensus 51 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~-----~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~ 124 (263)
T 3pfg_A 51 AASLLDVACGTGMHLRHLADSFGTVEGLELSADML-----AIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHL 124 (263)
T ss_dssp CCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHH-----HHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGS
T ss_pred CCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHH-----HHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhc
Confidence 368999999999999999875 466776665544 5566666688999999999888 68999999887468887
Q ss_pred c---chHHHHHHHHhhcCCCcEEEEEc
Q 008748 234 Q---RDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 234 ~---d~~~~L~el~RvLkPGG~lvis~ 257 (555)
. +...+++++.++|||||+|++..
T Consensus 125 ~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 125 AGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp CHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 4 45678999999999999999963
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-13 Score=135.74 Aligned_cols=142 Identities=15% Similarity=0.104 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCC
Q 008748 133 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT 210 (555)
Q Consensus 133 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~ 210 (555)
..+.+.+.+.+.. .+..+|||||||+|.++..+++. .|+++|+++.++ +.++++. ++.+.++|+
T Consensus 20 ~~~~~~l~~~~~~--------~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~-----~~a~~~~-~~~~~~~d~ 85 (261)
T 3ege_A 20 IRIVNAIINLLNL--------PKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMR-----QQAVVHP-QVEWFTGYA 85 (261)
T ss_dssp HHHHHHHHHHHCC--------CTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHH-----HSSCCCT-TEEEECCCT
T ss_pred HHHHHHHHHHhCC--------CCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHH-----HHHHhcc-CCEEEECch
Confidence 3455666666653 23468999999999999999874 577777766544 4444433 889999999
Q ss_pred CCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCC--------CChhhHH-------HHHHHH
Q 008748 211 KRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA--------HDPENRR-------IWNAMY 275 (555)
Q Consensus 211 ~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~--------~~~e~~~-------~~~~l~ 275 (555)
..+|+++++||+|+|.. +++|..++..+++++.|+|| ||++++.++.... ..+.... .-..+.
T Consensus 86 ~~~~~~~~~fD~v~~~~-~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (261)
T 3ege_A 86 ENLALPDKSVDGVISIL-AIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN 163 (261)
T ss_dssp TSCCSCTTCBSEEEEES-CGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH
T ss_pred hhCCCCCCCEeEEEEcc-hHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH
Confidence 99999999999999888 58888999999999999999 9988887654211 1111111 123577
Q ss_pred HHHHhcCcEEEEEeec
Q 008748 276 DLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 276 ~l~~~~gw~vv~~~~~ 291 (555)
++++.||..+.....
T Consensus 164 -~l~~aGF~~v~~~~~ 178 (261)
T 3ege_A 164 -LLQENTKRRVEAIPF 178 (261)
T ss_dssp -HHHHHHCSEEEEEEC
T ss_pred -HHHHcCCCceeEEEe
Confidence 999999987766544
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-13 Score=138.07 Aligned_cols=132 Identities=12% Similarity=0.168 Sum_probs=97.9
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
+..+|||||||+|.++..+++. .|+++|+++.++..+..+. ...+. ++.+..+|...+ +++||+|++.. +
T Consensus 72 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~-~ 146 (302)
T 3hem_A 72 PGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMF-DEVDSPRRKEVRIQGWEEF---DEPVDRIVSLG-A 146 (302)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHH-HHSCCSSCEEEEECCGGGC---CCCCSEEEEES-C
T ss_pred CcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH-HhcCCCCceEEEECCHHHc---CCCccEEEEcc-h
Confidence 3468999999999999998864 6889999888876666443 33343 588999998776 58999999887 6
Q ss_pred cccccch---------HHHHHHHHhhcCCCcEEEEEcCCCCCCChh----------------hH----------HHHHHH
Q 008748 230 IDWLQRD---------GILLLELDRLLRPGGYFVYSSPEAYAHDPE----------------NR----------RIWNAM 274 (555)
Q Consensus 230 l~~~~d~---------~~~L~el~RvLkPGG~lvis~P~~~~~~~e----------------~~----------~~~~~l 274 (555)
++|.+++ ..+++++.++|||||++++.++........ .. ..-.++
T Consensus 147 ~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~~ 226 (302)
T 3hem_A 147 FEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQV 226 (302)
T ss_dssp GGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHH
T ss_pred HHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCCCCHHHH
Confidence 8888655 689999999999999999977532110000 00 012367
Q ss_pred HHHHHhcCcEEEEEeec
Q 008748 275 YDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 275 ~~l~~~~gw~vv~~~~~ 291 (555)
.+++++.||+++..+..
T Consensus 227 ~~~l~~aGf~~~~~~~~ 243 (302)
T 3hem_A 227 DYYSSNAGWKVERYHRI 243 (302)
T ss_dssp HHHHHHHTCEEEEEEEC
T ss_pred HHHHHhCCcEEEEEEeC
Confidence 88899999998877654
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.46 E-value=5e-13 Score=128.61 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=80.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC------CCeEEEEeCCCCCCCCCCCccEEEe
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG------IPSTLGVLGTKRLPYPSRSFELAHC 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg------~~v~~~~~d~~~Lp~~d~sFDlVv~ 225 (555)
..+|||||||+|.++..|++. .++++|+++.++..+..+.. ..+ .++.+..+|+..++.++++||+|+|
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 108 (217)
T 3jwh_A 30 ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLD-RLRLPRNQWERLQLIQGALTYQDKRFHGYDAATV 108 (217)
T ss_dssp CCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHT-TCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHH-HhcCCcccCcceEEEeCCcccccccCCCcCEEee
Confidence 358999999999999999863 68889888887766653332 222 2688999998888877789999998
Q ss_pred cccccccccch--HHHHHHHHhhcCCCcEEEEEc
Q 008748 226 SRCRIDWLQRD--GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 226 s~~~l~~~~d~--~~~L~el~RvLkPGG~lvis~ 257 (555)
.. +++|..++ ..+++++.++|||||+++++.
T Consensus 109 ~~-~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 109 IE-VIEHLDLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp ES-CGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred HH-HHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 88 68888766 789999999999999777654
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-13 Score=133.26 Aligned_cols=130 Identities=22% Similarity=0.313 Sum_probs=98.6
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
..+|||||||+|.++..+++. .++++|+++.++ +.++++. .++.+..+|+..+++++++||+|++.. ++
T Consensus 44 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~-----~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l 117 (243)
T 3bkw_A 44 GLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKML-----ARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSL-AL 117 (243)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHH-----HHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEES-CG
T ss_pred CCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHH-----HHHHHhcccCCceEEEcChhhccCCCCCceEEEEec-cc
Confidence 468999999999999999864 466777665554 4555443 257889999988988889999999888 68
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCCCC---------C-------------CC-------hhhH-------HHHHHH
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPEAY---------A-------------HD-------PENR-------RIWNAM 274 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~~~---------~-------------~~-------~e~~-------~~~~~l 274 (555)
++.++...+++++.++|+|||+++++.+... . .. .... ....++
T Consensus 118 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 197 (243)
T 3bkw_A 118 HYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTT 197 (243)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCHHHH
T ss_pred cccchHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccHHHH
Confidence 8888999999999999999999999874311 0 00 0000 024578
Q ss_pred HHHHHhcCcEEEEEeec
Q 008748 275 YDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 275 ~~l~~~~gw~vv~~~~~ 291 (555)
.+++++.||+++.....
T Consensus 198 ~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 198 LNALIRSGFAIEHVEEF 214 (243)
T ss_dssp HHHHHHTTCEEEEEEEC
T ss_pred HHHHHHcCCEeeeeccC
Confidence 89999999998876543
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-14 Score=136.10 Aligned_cols=134 Identities=12% Similarity=0.024 Sum_probs=91.9
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHH------------cCCCeEEEEeCCCCCCCCC-CCc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALE------------RGIPSTLGVLGTKRLPYPS-RSF 220 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~------------rg~~v~~~~~d~~~Lp~~d-~sF 220 (555)
..+|||+|||+|.++..|+++ .|+|+|+|+.++..++.+.... ...++.+.++|+..+++++ ++|
T Consensus 23 ~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~f 102 (203)
T 1pjz_A 23 GARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHC 102 (203)
T ss_dssp TCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHSE
T ss_pred CCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCCE
Confidence 468999999999999999864 6888888888876655322110 1357899999999999875 799
Q ss_pred cEEEecccccccccch--HHHHHHHHhhcCCCcEEEEEcCCCCC---CChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 221 ELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYA---HDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 221 DlVv~s~~~l~~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~---~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
|+|++.. ++++.+.. ..+++++.|+|||||++++.+..... ..+...-.-+++.++++. ||++...+..
T Consensus 103 D~v~~~~-~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 103 AAFYDRA-AMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp EEEEEES-CGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEEEES
T ss_pred EEEEECc-chhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEeccc
Confidence 9999876 46666433 45899999999999984443311100 000000012467777777 9987765543
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=7.2e-14 Score=141.35 Aligned_cols=132 Identities=8% Similarity=0.082 Sum_probs=88.5
Q ss_pred CCCEEEEECCCCcHHHHHH----hc--CCC----ccccCChhhhhHHHHHHHHHcCC-CeEE--EEeCCCCCC------C
Q 008748 155 NIRNVLDVGCGVASFGAYL----LS--HDI----IAMSLAPNDVHENQIQFALERGI-PSTL--GVLGTKRLP------Y 215 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~L----a~--~~V----~~vdis~~dls~a~i~~A~~rg~-~v~~--~~~d~~~Lp------~ 215 (555)
+..+|||||||+|.++..+ +. ..+ +++|+++.|+..+..+.+...+. ++.+ ..++.+.++ +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 3468999999999765433 22 123 88999988887666444322232 3443 344444443 5
Q ss_pred CCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhH-H--------------HHHHHHHHHHh
Q 008748 216 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR-R--------------IWNAMYDLLKS 280 (555)
Q Consensus 216 ~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~-~--------------~~~~l~~l~~~ 280 (555)
++++||+|+|++ ++||++|+..+|+++.|+|||||+|+++.+.......... . .-.++.+++++
T Consensus 132 ~~~~fD~V~~~~-~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 210 (292)
T 2aot_A 132 ELQKWDFIHMIQ-MLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDN 210 (292)
T ss_dssp CCCCEEEEEEES-CGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHHH
T ss_pred CCCceeEEEEee-eeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHHH
Confidence 678999999988 6999999999999999999999999997543210000000 0 11366788888
Q ss_pred cCcEEEE
Q 008748 281 MCWKIVS 287 (555)
Q Consensus 281 ~gw~vv~ 287 (555)
.||+++.
T Consensus 211 aGf~~~~ 217 (292)
T 2aot_A 211 LGLKYEC 217 (292)
T ss_dssp HTCCEEE
T ss_pred CCCceEE
Confidence 8887664
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-13 Score=133.92 Aligned_cols=133 Identities=13% Similarity=0.109 Sum_probs=97.2
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHH-cCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALE-RGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~-rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
.+|||||||+|.++..|++. .|+++|+++.++..+..+.... ...++.+.++|+..++. +++||+|++.. ++++.
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~-~l~~~ 145 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP-TELFDLIFDYV-FFCAI 145 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC-SSCEEEEEEES-STTTS
T ss_pred CCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC-CCCeeEEEECh-hhhcC
Confidence 48999999999999999875 6788888887775554332211 12358899999988774 46899999887 57777
Q ss_pred c--chHHHHHHHHhhcCCCcEEEEEcCCCCCCC--hhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 234 Q--RDGILLLELDRLLRPGGYFVYSSPEAYAHD--PENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 234 ~--d~~~~L~el~RvLkPGG~lvis~P~~~~~~--~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
+ +...++.++.++|||||++++......... ........++.+++++.||+++..+..
T Consensus 146 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 207 (235)
T 3lcc_A 146 EPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEEN 207 (235)
T ss_dssp CGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEec
Confidence 6 668899999999999999998764321110 000012357888999999999876654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.4e-13 Score=124.52 Aligned_cols=125 Identities=18% Similarity=0.262 Sum_probs=96.6
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
..+|||+|||+|.++..+++. .++++|+++.+ ++.++++..++.+...|+..+++++++||+|++...++++.
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~-----~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~ 121 (195)
T 3cgg_A 47 GAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPIL-----IDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFL 121 (195)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHH-----HHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGS
T ss_pred CCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHH-----HHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhc
Confidence 458999999999999999875 46666665544 45555555678999999988888888999999874467776
Q ss_pred --cchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 234 --QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 234 --~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
++...++.++.++|+|||.+++..+..... ...++.+++++.||+++.....
T Consensus 122 ~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~------~~~~~~~~l~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 122 AEDGREPALANIHRALGADGRAVIGFGAGRGW------VFGDFLEVAERVGLELENAFES 175 (195)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEETTSSC------CHHHHHHHHHHHTEEEEEEESS
T ss_pred ChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCc------CHHHHHHHHHHcCCEEeeeecc
Confidence 344779999999999999999987654222 2346788899999998865443
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3e-13 Score=128.34 Aligned_cols=130 Identities=13% Similarity=0.116 Sum_probs=95.8
Q ss_pred EEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc-cc
Q 008748 158 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW-LQ 234 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~-~~ 234 (555)
+|||||||+|.++..|++. .++++|+++.++..+.... ...+.++.+..+|+..+++++++||+|+++. .++ ..
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~~~~ 108 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLA-QEKGVKITTVQSNLADFDIVADAWEGIVSIF--CHLPSS 108 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHH-HHHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CCCCHH
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHH-HhcCCceEEEEcChhhcCCCcCCccEEEEEh--hcCCHH
Confidence 8999999999999999875 6888888888776665333 3345688999999988888889999999865 333 34
Q ss_pred chHHHHHHHHhhcCCCcEEEEEcCCCCCC-----Ch---hhHHHHHHHHHHHHhcCcEEEEEeece
Q 008748 235 RDGILLLELDRLLRPGGYFVYSSPEAYAH-----DP---ENRRIWNAMYDLLKSMCWKIVSKKDQT 292 (555)
Q Consensus 235 d~~~~L~el~RvLkPGG~lvis~P~~~~~-----~~---e~~~~~~~l~~l~~~~gw~vv~~~~~~ 292 (555)
+...++.++.++|+|||+++++.+..... .+ ...-.-.++.++++ ||+++......
T Consensus 109 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~~ 172 (202)
T 2kw5_A 109 LRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANNLE 172 (202)
T ss_dssp HHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEEEE
Confidence 56789999999999999999987543110 00 00112246777777 99988766543
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-12 Score=122.18 Aligned_cols=133 Identities=17% Similarity=0.267 Sum_probs=96.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
..+|||+|||+|.++..+++. .++++|+++.++..+..+.......++.+..+|+..+++ +++||+|++.. +++|.
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~-~l~~~ 110 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTV-VLMFL 110 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEES-CGGGS
T ss_pred CCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcc-hhhhC
Confidence 358999999999999999864 688999998887766644433333368999999988888 78999999887 57777
Q ss_pred c--chHHHHHHHHhhcCCCcEEEEEcCCC---CCCChhh--HHHHHHHHHHHHhcCcEEEEEeece
Q 008748 234 Q--RDGILLLELDRLLRPGGYFVYSSPEA---YAHDPEN--RRIWNAMYDLLKSMCWKIVSKKDQT 292 (555)
Q Consensus 234 ~--d~~~~L~el~RvLkPGG~lvis~P~~---~~~~~e~--~~~~~~l~~l~~~~gw~vv~~~~~~ 292 (555)
. +...++.++.++|+|||++++..+.. +...... .-.-.++.++++. |+++......
T Consensus 111 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~~~~ 174 (199)
T 2xvm_A 111 EAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYNEDV 174 (199)
T ss_dssp CGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEECCE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEecccc
Confidence 6 66789999999999999988765321 1000000 0011256666665 9888776553
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-12 Score=125.41 Aligned_cols=127 Identities=10% Similarity=0.070 Sum_probs=97.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--CCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--~~d~sFDlVv~s~~~ 229 (555)
..+|||||||+|.++..++.. .++++|+++.++..+..+.......++.+..+|+..++ +++++||+|++.+ .
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~-~ 120 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF-S 120 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES-C
T ss_pred CCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC-C
Confidence 358999999999999988853 68999999988877765444333347899999988877 7788999999876 3
Q ss_pred ccccc--------chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 230 IDWLQ--------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 230 l~~~~--------d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
.+|.. ....++.++.++|+|||.+++.+... .....+.+++++.||.++....+
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~d 182 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR--------GLFEYSLVSFSQYGMKLNGVWLD 182 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH--------HHHHHHHHHHHHHTCEEEEEESS
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH--------HHHHHHHHHHHHCCCeeeecccc
Confidence 44432 12569999999999999999976431 23467777888899988766543
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.7e-13 Score=125.42 Aligned_cols=104 Identities=13% Similarity=0.045 Sum_probs=76.3
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC-CCCCCccEEEeccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-YPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp-~~d~sFDlVv~s~~~l~~ 232 (555)
..+|||+|||+|.++..|++. .|+++|+++.++..+..+.......++.+...+...++ +.+++||+|+++...++.
T Consensus 23 ~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~~ 102 (185)
T 3mti_A 23 ESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLPS 102 (185)
T ss_dssp TCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC----
T ss_pred CCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCCCC
Confidence 468999999999999999974 78899999988877765444333356788887766653 456889999876333332
Q ss_pred --------ccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 233 --------LQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 233 --------~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
..+...++.++.++|||||+++++...
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 103 ADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp -------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred cchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 123356889999999999999997643
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-13 Score=130.43 Aligned_cols=98 Identities=24% Similarity=0.359 Sum_probs=83.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC-CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 234 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~ 234 (555)
..+|||||||+|.++..+ .. .++++|+++.++ +.++++..++.+..+|...+++++++||+|++.. +++|.+
T Consensus 37 ~~~vLdiG~G~G~~~~~l-~~~~v~~vD~s~~~~-----~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~~~ 109 (211)
T 2gs9_A 37 GESLLEVGAGTGYWLRRL-PYPQKVGVEPSEAML-----AVGRRRAPEATWVRAWGEALPFPGESFDVVLLFT-TLEFVE 109 (211)
T ss_dssp CSEEEEETCTTCHHHHHC-CCSEEEEECCCHHHH-----HHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEES-CTTTCS
T ss_pred CCeEEEECCCCCHhHHhC-CCCeEEEEeCCHHHH-----HHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcC-hhhhcC
Confidence 468999999999999988 54 678888877665 4444444678899999999999889999999887 689999
Q ss_pred chHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 235 RDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 235 d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
++..+++++.++|||||.++++++..
T Consensus 110 ~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 110 DVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 99999999999999999999998764
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.9e-13 Score=133.75 Aligned_cols=165 Identities=10% Similarity=0.066 Sum_probs=111.9
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCC--CCCCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLP--YPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp--~~d~sFDlVv~s~~ 228 (555)
..+|||+|||+|.++..++++ .|+++|+++.++..++.+... .+. ++.+..+|+..++ +++++||+|+++..
T Consensus 50 ~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~-~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npP 128 (259)
T 3lpm_A 50 KGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAY-NQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP 128 (259)
T ss_dssp CCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHH-TTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCC
T ss_pred CCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH-CCCcccEEEEECcHHHhhhhhccCCccEEEECCC
Confidence 468999999999999999874 688999998888766654443 333 4899999987765 55789999998532
Q ss_pred cccc----c---------------cchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 229 RIDW----L---------------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 229 ~l~~----~---------------~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
.+.. . .+...++.++.++|||||+++++.+.. ...++...+++.||......
T Consensus 129 y~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------~~~~~~~~l~~~~~~~~~~~ 199 (259)
T 3lpm_A 129 YFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE---------RLLDIIDIMRKYRLEPKRIQ 199 (259)
T ss_dssp C-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT---------THHHHHHHHHHTTEEEEEEE
T ss_pred CCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH---------HHHHHHHHHHHCCCceEEEE
Confidence 1111 0 123568999999999999999987652 23467778888999887655
Q ss_pred eceEEeecCCCchhhhccCCCC-----CCCCCCC-CCCCCccccccc
Q 008748 290 DQTVIWAKPISNSCYLKRVPGS-----RPPLCSS-DDDPDVTWNVLM 330 (555)
Q Consensus 290 ~~~~iw~KPl~~~c~~~r~~~~-----~p~lc~~-~~~~~~~wy~~L 330 (555)
.......++.+......++.+. .|+++.. +++.++.+|..|
T Consensus 200 ~v~~~~~~~~~~~l~~~~k~~~~~~~~~~~l~i~~~~g~yt~~~~~~ 246 (259)
T 3lpm_A 200 FVHPRSDREANTVLVEGIKDGKPGVKYVPPVIVYDELGEYTPVIKEI 246 (259)
T ss_dssp EEESSTTSCCSEEEEEEEETCCSCCEEEEEEECBCTTSSBCHHHHHH
T ss_pred EeecCCCCCcEEEEEEEEeCCCCCCeecCCEEEECCCCCcCHHHHHH
Confidence 5433333444444444444322 2445544 445677777655
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-13 Score=135.73 Aligned_cols=144 Identities=15% Similarity=0.107 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeC
Q 008748 133 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG 209 (555)
Q Consensus 133 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d 209 (555)
..+.+.+++.+. .++.+|||||||+|..+..+++. .++++|+++.++..++ +.+...+..+.+..++
T Consensus 47 ~~~m~~~a~~~~---------~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~-~~~~~~~~~~~~~~~~ 116 (236)
T 3orh_A 47 TPYMHALAAAAS---------SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLR-DWAPRQTHKVIPLKGL 116 (236)
T ss_dssp HHHHHHHHHHHT---------TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHH-HHGGGCSSEEEEEESC
T ss_pred HHHHHHHHHhhc---------cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHH-HHHhhCCCceEEEeeh
Confidence 455666666664 23468999999999999999874 6888999887775555 3444456677888887
Q ss_pred CCCC--CCCCCCccEEEec----ccccccccchHHHHHHHHhhcCCCcEEEEEcCCC------CCCChhhHHHH-HHHHH
Q 008748 210 TKRL--PYPSRSFELAHCS----RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA------YAHDPENRRIW-NAMYD 276 (555)
Q Consensus 210 ~~~L--p~~d~sFDlVv~s----~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~------~~~~~e~~~~~-~~l~~ 276 (555)
.+.+ ++++++||.|++- ...+++..+...++.++.|+|||||.|++..... ..+.. ....+ +....
T Consensus 117 a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 195 (236)
T 3orh_A 117 WEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSD-ITIMFEETQVP 195 (236)
T ss_dssp HHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSC-HHHHHHHHTHH
T ss_pred HHhhcccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhh-hhhhhHHHHHH
Confidence 6543 5778899999741 2245566778889999999999999999853110 00111 11222 34456
Q ss_pred HHHhcCcEEEE
Q 008748 277 LLKSMCWKIVS 287 (555)
Q Consensus 277 l~~~~gw~vv~ 287 (555)
.+.+.||++..
T Consensus 196 ~L~eaGF~~~~ 206 (236)
T 3orh_A 196 ALLEAGFRREN 206 (236)
T ss_dssp HHHHHTCCGGG
T ss_pred HHHHcCCeEEE
Confidence 67788997543
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.2e-13 Score=125.82 Aligned_cols=125 Identities=12% Similarity=0.127 Sum_probs=93.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
..+|||+|||+|.++..+++. .++++|+++.++ +.++++..++.+...| +++++++||+|++.. ++++.
T Consensus 18 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~-----~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~-~l~~~ 88 (170)
T 3i9f_A 18 KGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIAL-----KEVKEKFDSVITLSDP---KEIPDNSVDFILFAN-SFHDM 88 (170)
T ss_dssp CEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHH-----HHHHHHCTTSEEESSG---GGSCTTCEEEEEEES-CSTTC
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHH-----HHHHHhCCCcEEEeCC---CCCCCCceEEEEEcc-chhcc
Confidence 458999999999999999875 577777766554 4555556678888887 778889999999888 68888
Q ss_pred cchHHHHHHHHhhcCCCcEEEEEcCCCCCC----ChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 234 QRDGILLLELDRLLRPGGYFVYSSPEAYAH----DPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 234 ~d~~~~L~el~RvLkPGG~lvis~P~~~~~----~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
+++..+++++.|+|||||+++++.+..... .....-.-.++.++++ ||+++.....
T Consensus 89 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~ 148 (170)
T 3i9f_A 89 DDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNP 148 (170)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECS
T ss_pred cCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCC
Confidence 899999999999999999999987542111 0010012245667777 9998876654
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.2e-13 Score=129.55 Aligned_cols=101 Identities=17% Similarity=0.344 Sum_probs=81.0
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
+..+|||||||+|.++..|++. .++++|+++.++..+..+.. . ..++.+.++|+..++ ++++||+|+|+. +++|
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~-~~~~~~~~~d~~~~~-~~~~fD~v~~~~-~l~~ 126 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTK-R-WSHISWAATDILQFS-TAELFDLIVVAE-VLYY 126 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTT-T-CSSEEEEECCTTTCC-CSCCEEEEEEES-CGGG
T ss_pred CCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcc-c-CCCeEEEEcchhhCC-CCCCccEEEEcc-HHHh
Confidence 3468999999999999999875 67788887776654442221 1 236899999998888 678999999987 6888
Q ss_pred ccch---HHHHHHHHhhcCCCcEEEEEcCC
Q 008748 233 LQRD---GILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 233 ~~d~---~~~L~el~RvLkPGG~lvis~P~ 259 (555)
..++ ..++.++.++|||||+++++++.
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 8876 45799999999999999998754
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.1e-13 Score=134.56 Aligned_cols=138 Identities=17% Similarity=0.250 Sum_probs=102.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCC-CCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPY-PSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~-~d~sFDlVv~s~~~ 229 (555)
..+|||||||+|.++..+++. .++++|+++.++..+..+. ...+. ++.+.++|+..+++ ++++||+|+|.. +
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~-~ 142 (298)
T 1ri5_A 65 GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRA-RNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF-S 142 (298)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHH-HTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES-C
T ss_pred CCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HhcCCCccEEEEECCccccccCCCCCcCEEEECc-h
Confidence 368999999999998888753 6889999888876665333 22332 47889999988888 678999999887 4
Q ss_pred ccc----ccchHHHHHHHHhhcCCCcEEEEEcCCCCC-----------------------CChh----------------
Q 008748 230 IDW----LQRDGILLLELDRLLRPGGYFVYSSPEAYA-----------------------HDPE---------------- 266 (555)
Q Consensus 230 l~~----~~d~~~~L~el~RvLkPGG~lvis~P~~~~-----------------------~~~e---------------- 266 (555)
+|| ..+...++.++.++|||||++++++|.... ..+.
T Consensus 143 l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 222 (298)
T 1ri5_A 143 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNN 222 (298)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSS
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhcC
Confidence 766 456678999999999999999998765210 0000
Q ss_pred ---hHHHHHHHHHHHHhcCcEEEEEeeceEEe
Q 008748 267 ---NRRIWNAMYDLLKSMCWKIVSKKDQTVIW 295 (555)
Q Consensus 267 ---~~~~~~~l~~l~~~~gw~vv~~~~~~~iw 295 (555)
.....+++.+++++.||+++.......++
T Consensus 223 ~~~~~~~~~~l~~ll~~aGf~~v~~~~~~~~~ 254 (298)
T 1ri5_A 223 CIEYFVDFTRMVDGFKRLGLSLVERKGFIDFY 254 (298)
T ss_dssp EEEECCCHHHHHHHHHTTTEEEEEEEEHHHHH
T ss_pred CcccccCHHHHHHHHHHcCCEEEEecCHHHHH
Confidence 00023688999999999999877654433
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.2e-13 Score=136.55 Aligned_cols=132 Identities=18% Similarity=0.160 Sum_probs=97.9
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~ 228 (555)
..+|||||||+|.++..|+. ..++++|+++.++..+..+. ...+. ++.+.++|+..++++ ++||+|++..
T Consensus 119 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~- 195 (305)
T 3ocj_A 119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLA-AGHALAGQITLHRQDAWKLDTR-EGYDLLTSNG- 195 (305)
T ss_dssp TCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHH-TTSTTGGGEEEEECCGGGCCCC-SCEEEEECCS-
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHH-HhcCCCCceEEEECchhcCCcc-CCeEEEEECC-
Confidence 46899999999999999852 26788888887776555333 22333 388999999999988 8999999877
Q ss_pred ccccccchHH---HHHHHHhhcCCCcEEEEEcCCC---------CC---CChhhH------------------HHHHHHH
Q 008748 229 RIDWLQRDGI---LLLELDRLLRPGGYFVYSSPEA---------YA---HDPENR------------------RIWNAMY 275 (555)
Q Consensus 229 ~l~~~~d~~~---~L~el~RvLkPGG~lvis~P~~---------~~---~~~e~~------------------~~~~~l~ 275 (555)
+++|.+++.. +++++.++|||||+++++.... |. ...... ....++.
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTR 275 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHH
Confidence 5888777755 7999999999999999987331 10 011000 0235788
Q ss_pred HHHHhcCcEEEEEee
Q 008748 276 DLLKSMCWKIVSKKD 290 (555)
Q Consensus 276 ~l~~~~gw~vv~~~~ 290 (555)
+++++.||+++....
T Consensus 276 ~~l~~aGF~~v~~~~ 290 (305)
T 3ocj_A 276 AQLEEAGFTDLRFED 290 (305)
T ss_dssp HHHHHTTCEEEEEEC
T ss_pred HHHHHCCCEEEEEEc
Confidence 999999999987764
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.8e-13 Score=129.80 Aligned_cols=127 Identities=19% Similarity=0.229 Sum_probs=93.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC---CCCC-CCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL---PYPS-RSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L---p~~d-~sFDlVv~s~~~ 229 (555)
+.+|||||||+|.++..|++. .++++|+++.+ ++.++++ ..+.+...+...+ ++.. ++||+|+|+. +
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~-----~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~-~ 125 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALADRGIEAVGVDGDRTL-----VDAARAA-GAGEVHLASYAQLAEAKVPVGKDYDLICANF-A 125 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHH-----HHHHHHT-CSSCEEECCHHHHHTTCSCCCCCEEEEEEES-C
T ss_pred CCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHH-----HHHHHHh-cccccchhhHHhhcccccccCCCccEEEECc-h
Confidence 368999999999999999875 46666666544 4555555 5566777776555 5444 4599999987 5
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChh-----------------------hHHHHHHHHHHHHhcCcEEE
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE-----------------------NRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e-----------------------~~~~~~~l~~l~~~~gw~vv 286 (555)
++ ..++..+++++.++|||||+++++++........ ......++.+++++.||+++
T Consensus 126 l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 204 (227)
T 3e8s_A 126 LL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLV 204 (227)
T ss_dssp CC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEE
T ss_pred hh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEE
Confidence 66 7888999999999999999999988753211100 00123578899999999998
Q ss_pred EEee
Q 008748 287 SKKD 290 (555)
Q Consensus 287 ~~~~ 290 (555)
....
T Consensus 205 ~~~~ 208 (227)
T 3e8s_A 205 SLQE 208 (227)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7654
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.3e-13 Score=133.71 Aligned_cols=100 Identities=12% Similarity=0.190 Sum_probs=83.6
Q ss_pred CCCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHH--cCCCeEEEEeCCCCCCCCC------CCcc
Q 008748 155 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALE--RGIPSTLGVLGTKRLPYPS------RSFE 221 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~--rg~~v~~~~~d~~~Lp~~d------~sFD 221 (555)
+..+|||||||+|.++..|++ ..|+++|+++.++..+....... ...++.+.++|+..+++++ ++||
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 115 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKID 115 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCee
Confidence 346999999999999999983 26889999888886666443332 1567899999999998877 8999
Q ss_pred EEEecccccccccchHHHHHHHHhhcCCCcEEEEE
Q 008748 222 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 222 lVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis 256 (555)
+|+|+. ++||. ++..++.++.++|||||.|++.
T Consensus 116 ~V~~~~-~l~~~-~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 116 MITAVE-CAHWF-DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp EEEEES-CGGGS-CHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeHhh-HHHHh-CHHHHHHHHHHhcCCCcEEEEE
Confidence 999988 68888 9999999999999999999983
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.8e-12 Score=124.60 Aligned_cols=100 Identities=18% Similarity=0.312 Sum_probs=81.6
Q ss_pred CEEEEECCCCcHHHHHHhcC-CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc--
Q 008748 157 RNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL-- 233 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~-~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~-- 233 (555)
.+|||+|||+|.++..+++. .++++|+++.++..+..+. ...+.++.+..+|+..++++ ++||+|++...+++|.
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~ 112 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKA-METNRHVDFWVQDMRELELP-EPVDAITILCDSLNYLQT 112 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHH-HHTTCCCEEEECCGGGCCCS-SCEEEEEECTTGGGGCCS
T ss_pred CeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhh-hhcCCceEEEEcChhhcCCC-CCcCEEEEeCCchhhcCC
Confidence 58999999999999999874 6888999888876666433 33456789999999888876 7899999875457777
Q ss_pred -cchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 234 -QRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 234 -~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
.+...+++++.++|+|||.+++..+
T Consensus 113 ~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 113 EADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 4556799999999999999998654
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.6e-13 Score=128.34 Aligned_cols=97 Identities=21% Similarity=0.293 Sum_probs=78.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
..+|||+|||+|.++..|++. .++++|+++.++ +.|+++..++.+..+|+..+++ +++||+|+|+..+++|.
T Consensus 41 ~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~-----~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~ 114 (239)
T 3bxo_A 41 ASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDML-----THARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYL 114 (239)
T ss_dssp CCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHH-----HHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGC
T ss_pred CCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHH-----HHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhc
Confidence 358999999999999999874 577777766655 4555555678999999988887 67899999876678887
Q ss_pred ---cchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 234 ---QRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 234 ---~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
.+...+++++.++|+|||.+++..+
T Consensus 115 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 115 KTTEELGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp CSHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 4456799999999999999999764
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.5e-13 Score=136.69 Aligned_cols=101 Identities=11% Similarity=0.161 Sum_probs=80.8
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
+..+|||||||+|.++..+++. .|+++|+++.++..+.... .+.+ ..+.+..+|...++ ++||+|++.. +
T Consensus 90 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~-~ 164 (318)
T 2fk8_A 90 PGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVL-ASIDTNRSRQVLLQGWEDFA---EPVDRIVSIE-A 164 (318)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HTSCCSSCEEEEESCGGGCC---CCCSEEEEES-C
T ss_pred CcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-HhcCCCCceEEEECChHHCC---CCcCEEEEeC-h
Confidence 3468999999999999998853 6888888888776655333 3333 34888899987775 7899999888 5
Q ss_pred cccc--cchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 230 IDWL--QRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 230 l~~~--~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
++|. ++...++.++.++|||||.+++.++..
T Consensus 165 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 197 (318)
T 2fk8_A 165 FEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS 197 (318)
T ss_dssp GGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred HHhcCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 8888 677889999999999999999987654
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=125.63 Aligned_cols=124 Identities=10% Similarity=0.145 Sum_probs=93.3
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC-CCeEEEEeCCCCCC--CCCCCccEEEecccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLP--YPSRSFELAHCSRCR 229 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~d~~~Lp--~~d~sFDlVv~s~~~ 229 (555)
.+|||||||+|.++..|++. .++|+|+++.++..+..+.. +.+ .++.+..+|+..++ +++++||.|++.+.
T Consensus 40 ~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~-~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~- 117 (213)
T 2fca_A 40 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVK-DSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS- 117 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHH-HSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC-
T ss_pred ceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHH-HcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC-
Confidence 58999999999999998853 68999999988877664443 334 46899999988776 77889999987652
Q ss_pred cccccc--------hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 230 IDWLQR--------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 230 l~~~~d--------~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
.+|... ...++.++.++|||||.|++.+... .....+.+.+++.||.......
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~--------~~~~~~~~~~~~~g~~~~~~~~ 178 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR--------GLFEYSLKSFSEYGLLLTYVSL 178 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH--------HHHHHHHHHHHHHTCEEEEEES
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCccccccc
Confidence 334321 2568999999999999999976441 2345666777888998765443
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.7e-13 Score=126.57 Aligned_cols=110 Identities=21% Similarity=0.282 Sum_probs=90.3
Q ss_pred CCEEEEECCCCcHHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 235 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d 235 (555)
..+|||||||+|.++..++ ..++++|+++. .+.+..+|+..+++++++||+|++.. ++|+ .+
T Consensus 68 ~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~-~~ 129 (215)
T 2zfu_A 68 SLVVADFGCGDCRLASSIR-NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCL-SLMG-TN 129 (215)
T ss_dssp TSCEEEETCTTCHHHHHCC-SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEES-CCCS-SC
T ss_pred CCeEEEECCcCCHHHHHhh-ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEeh-hccc-cC
Confidence 3589999999999999885 57899999876 45677889888999889999999987 4665 78
Q ss_pred hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 236 DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 236 ~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
...++.++.++|+|||+++++.+..... .-.++.+++++.||+++...
T Consensus 130 ~~~~l~~~~~~L~~gG~l~i~~~~~~~~------~~~~~~~~l~~~Gf~~~~~~ 177 (215)
T 2zfu_A 130 IRDFLEEANRVLKPGGLLKVAEVSSRFE------DVRTFLRAVTKLGFKIVSKD 177 (215)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEECGGGCS------CHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEEEEcCCCCC------CHHHHHHHHHHCCCEEEEEe
Confidence 8899999999999999999987653211 23577888999999988654
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=125.26 Aligned_cols=130 Identities=15% Similarity=0.266 Sum_probs=96.6
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC--CCCCCCCccEEEeccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR--LPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~--Lp~~d~sFDlVv~s~~~l 230 (555)
+..+|||+|||+|.++..+++. .++++|+++. +++.++++. ..+..+|+.. +++++++||+|++.. ++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~-----~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~v~~~~-~l 103 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPE-----AAEQAKEKL--DHVVLGDIETMDMPYEEEQFDCVIFGD-VL 103 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHH-----HHHHHHTTS--SEEEESCTTTCCCCSCTTCEEEEEEES-CG
T ss_pred CCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHH-----HHHHHHHhC--CcEEEcchhhcCCCCCCCccCEEEECC-hh
Confidence 3468999999999999999875 4556665554 445555543 3677888765 677788999999887 68
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCCCCC-------------CC------hh--hHHHHHHHHHHHHhcCcEEEEEe
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-------------HD------PE--NRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~-------------~~------~e--~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
+|..++..++.++.++|+|||+++++.|.... .. .. ......++.+++++.||+++...
T Consensus 104 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 183 (230)
T 3cc8_A 104 EHLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVD 183 (230)
T ss_dssp GGSSCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEE
Confidence 88889999999999999999999998865311 00 00 00123578899999999988766
Q ss_pred ece
Q 008748 290 DQT 292 (555)
Q Consensus 290 ~~~ 292 (555)
...
T Consensus 184 ~~~ 186 (230)
T 3cc8_A 184 RVY 186 (230)
T ss_dssp EEE
T ss_pred ecc
Confidence 644
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.8e-13 Score=134.67 Aligned_cols=134 Identities=14% Similarity=0.211 Sum_probs=93.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHc--------------------------------
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-------------------------------- 199 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~r-------------------------------- 199 (555)
..+|||||||+|.++..|+.. .|+|+|+++.++..+..+.....
T Consensus 47 ~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (292)
T 3g07_A 47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCF 126 (292)
T ss_dssp TSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC------------------------------------
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccc
Confidence 469999999999999998863 68899998887766653322110
Q ss_pred --------------------------CCCeEEEEeCCCCCC-----CCCCCccEEEeccccccccc------chHHHHHH
Q 008748 200 --------------------------GIPSTLGVLGTKRLP-----YPSRSFELAHCSRCRIDWLQ------RDGILLLE 242 (555)
Q Consensus 200 --------------------------g~~v~~~~~d~~~Lp-----~~d~sFDlVv~s~~~l~~~~------d~~~~L~e 242 (555)
..++.+..+|+...+ +.+++||+|+|.. +++|+. +...++++
T Consensus 127 p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~-vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 127 PASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLS-LTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ---------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEES-CHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEECh-HHHHhhhcCCHHHHHHHHHH
Confidence 035888888876544 5678999999887 576653 55779999
Q ss_pred HHhhcCCCcEEEEEcCCCC-----C-CChhhHHHH-------HHHHHHHHh--cCcEEEEEee
Q 008748 243 LDRLLRPGGYFVYSSPEAY-----A-HDPENRRIW-------NAMYDLLKS--MCWKIVSKKD 290 (555)
Q Consensus 243 l~RvLkPGG~lvis~P~~~-----~-~~~e~~~~~-------~~l~~l~~~--~gw~vv~~~~ 290 (555)
+.++|||||+|++...... . ........+ .++..++.+ .||+.++...
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~ 268 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVA 268 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC-
T ss_pred HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEec
Confidence 9999999999999765421 0 111112222 267788888 9997766544
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-12 Score=122.48 Aligned_cols=148 Identities=16% Similarity=0.122 Sum_probs=100.5
Q ss_pred CCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHH
Q 008748 122 PGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE 198 (555)
Q Consensus 122 ~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~ 198 (555)
.+.+..|..+.....+.+.+.+... + .+..+|||+|||+|.++..+++. .++++|+++.++..+..+.. .
T Consensus 33 ~~~~~~f~~~~~~~~~~~~~~l~~~---~---~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-~ 105 (205)
T 3grz_A 33 LDPGLAFGTGNHQTTQLAMLGIERA---M---VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAA-L 105 (205)
T ss_dssp ESCC-----CCHHHHHHHHHHHHHH---C---SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH-H
T ss_pred ecCCcccCCCCCccHHHHHHHHHHh---c---cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-H
Confidence 3334444544444444444444311 0 12368999999999999998864 68899999888876664443 3
Q ss_pred cCC-CeEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHH
Q 008748 199 RGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDL 277 (555)
Q Consensus 199 rg~-~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l 277 (555)
.+. ++.+..+|.... .+++||+|++.. .+++ ...+++++.++|+|||+++++..... ....+.++
T Consensus 106 ~~~~~v~~~~~d~~~~--~~~~fD~i~~~~-~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~--------~~~~~~~~ 171 (205)
T 3grz_A 106 NGIYDIALQKTSLLAD--VDGKFDLIVANI-LAEI---LLDLIPQLDSHLNEDGQVIFSGIDYL--------QLPKIEQA 171 (205)
T ss_dssp TTCCCCEEEESSTTTT--CCSCEEEEEEES-CHHH---HHHHGGGSGGGEEEEEEEEEEEEEGG--------GHHHHHHH
T ss_pred cCCCceEEEecccccc--CCCCceEEEECC-cHHH---HHHHHHHHHHhcCCCCEEEEEecCcc--------cHHHHHHH
Confidence 344 388888887654 357899999876 3544 36789999999999999999754421 24567888
Q ss_pred HHhcCcEEEEEee
Q 008748 278 LKSMCWKIVSKKD 290 (555)
Q Consensus 278 ~~~~gw~vv~~~~ 290 (555)
+++.||+++....
T Consensus 172 ~~~~Gf~~~~~~~ 184 (205)
T 3grz_A 172 LAENSFQIDLKMR 184 (205)
T ss_dssp HHHTTEEEEEEEE
T ss_pred HHHcCCceEEeec
Confidence 9999999887554
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-11 Score=116.64 Aligned_cols=117 Identities=14% Similarity=0.008 Sum_probs=90.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|||+|||+|.++..+++. .++++|+++.++..++.+.......++.+..+|........++||+|++... ++
T Consensus 41 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~-~~ 119 (204)
T 3e05_A 41 DLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGS-GG 119 (204)
T ss_dssp TCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCC-TT
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCC-Cc
Confidence 468999999999999998863 5889999998887776544433334688899987554434467999998763 33
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcE
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 284 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~ 284 (555)
+...++.++.++|||||.+++..+.. ....++.+.+++.||.
T Consensus 120 ---~~~~~l~~~~~~LkpgG~l~~~~~~~--------~~~~~~~~~l~~~g~~ 161 (204)
T 3e05_A 120 ---MLEEIIDAVDRRLKSEGVIVLNAVTL--------DTLTKAVEFLEDHGYM 161 (204)
T ss_dssp ---CHHHHHHHHHHHCCTTCEEEEEECBH--------HHHHHHHHHHHHTTCE
T ss_pred ---CHHHHHHHHHHhcCCCeEEEEEeccc--------ccHHHHHHHHHHCCCc
Confidence 66789999999999999999977542 3456788889999993
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=6.3e-13 Score=133.59 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHc----CCCeEEE
Q 008748 133 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----GIPSTLG 206 (555)
Q Consensus 133 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~r----g~~v~~~ 206 (555)
..+.+.+.+.+.. .+..+|||||||+|.++..|++. .|+++|+++.++..+..+..... ..++.+.
T Consensus 43 ~~~~~~l~~~l~~--------~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 114 (293)
T 3thr_A 43 AEYKAWLLGLLRQ--------HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIE 114 (293)
T ss_dssp HHHHHHHHHHHHH--------TTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEE
T ss_pred HHHHHHHHHHhcc--------cCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEe
Confidence 4455555555542 12368999999999999999875 68888888888766654332211 1356788
Q ss_pred EeCCCCCC---CCCCCccEEEecccccccccc-------hHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 207 VLGTKRLP---YPSRSFELAHCSRCRIDWLQR-------DGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 207 ~~d~~~Lp---~~d~sFDlVv~s~~~l~~~~d-------~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
.+|...++ +++++||+|+|...+++|..+ ...+++++.++|||||+++++.|.
T Consensus 115 ~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 115 EANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp ECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 88888887 788999999997336888888 788999999999999999998876
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=6.2e-14 Score=148.84 Aligned_cols=130 Identities=13% Similarity=0.155 Sum_probs=94.0
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeE---EEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPST---LGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~---~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
+..+|||||||+|.++..|++. .++++|+++. +++.|++++.+.. +...+...+++++++||+|++.+ +
T Consensus 107 ~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~-----~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~-v 180 (416)
T 4e2x_A 107 PDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSG-----VAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAAN-T 180 (416)
T ss_dssp SSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHH-----HHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEES-C
T ss_pred CCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHH-----HHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECC-h
Confidence 3469999999999999999875 5666666554 4466666654432 12233455667778999999888 6
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCC--------CC-Chhh--HHHHHHHHHHHHhcCcEEEEEee
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAY--------AH-DPEN--RRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~--------~~-~~e~--~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
++|.+++..+++++.|+|||||++++..|... .. ..+. .....++..++++.||+++....
T Consensus 181 l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~ 252 (416)
T 4e2x_A 181 LCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQR 252 (416)
T ss_dssp GGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred HHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEE
Confidence 99999999999999999999999999876520 00 0000 01224788999999999886654
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.37 E-value=8.8e-13 Score=131.07 Aligned_cols=92 Identities=24% Similarity=0.415 Sum_probs=74.9
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|||||||+|.++..+++. .++++|+++ .+++.|+++..++.+..+|...+++++++||+|++... .
T Consensus 86 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~-~- 158 (269)
T 1p91_A 86 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSK-----VAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA-P- 158 (269)
T ss_dssp CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCH-----HHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC-C-
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCH-----HHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC-h-
Confidence 458999999999999998864 456666555 44566666677889999999999998899999998663 2
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
..+.++.|+|||||.+++++|..
T Consensus 159 ------~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 ------CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp ------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred ------hhHHHHHHhcCCCcEEEEEEcCH
Confidence 25899999999999999998774
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.8e-12 Score=124.67 Aligned_cols=102 Identities=13% Similarity=0.162 Sum_probs=79.7
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChh------hhhHHHHHHHHHcC--CCeEEEEeC---CCCCCCCCCC
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPN------DVHENQIQFALERG--IPSTLGVLG---TKRLPYPSRS 219 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~------dls~a~i~~A~~rg--~~v~~~~~d---~~~Lp~~d~s 219 (555)
..+|||||||+|.++..+++ ..++++|+++. ++..++.+. ...+ .++.+..+| ...+|+++++
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 122 (275)
T 3bkx_A 44 GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHL-LAGPLGDRLTVHFNTNLSDDLGPIADQH 122 (275)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHH-HTSTTGGGEEEECSCCTTTCCGGGTTCC
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHH-HhcCCCCceEEEECChhhhccCCCCCCC
Confidence 46899999999999998875 36889999986 665555333 3333 357888887 5566778899
Q ss_pred ccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 220 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 220 FDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
||+|+|.. +++|..++..+++.+.++++|||++++....
T Consensus 123 fD~v~~~~-~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~ 161 (275)
T 3bkx_A 123 FDRVVLAH-SLWYFASANALALLFKNMAAVCDHVDVAEWS 161 (275)
T ss_dssp CSEEEEES-CGGGSSCHHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred EEEEEEcc-chhhCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence 99999888 5888888888777777888889999997643
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.36 E-value=7.3e-13 Score=132.21 Aligned_cols=136 Identities=13% Similarity=0.093 Sum_probs=92.2
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHc-----------------------------CCC
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-----------------------------GIP 202 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~r-----------------------------g~~ 202 (555)
+..+|||||||+|.++..++.. .|+++|+++.++..+......+. ...
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA 134 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhh
Confidence 3468999999999887766543 58999999998876653321110 011
Q ss_pred eE-EEEeCCCC-CCC---CCCCccEEEecccccccc----cchHHHHHHHHhhcCCCcEEEEEcCCC---CCCChh----
Q 008748 203 ST-LGVLGTKR-LPY---PSRSFELAHCSRCRIDWL----QRDGILLLELDRLLRPGGYFVYSSPEA---YAHDPE---- 266 (555)
Q Consensus 203 v~-~~~~d~~~-Lp~---~d~sFDlVv~s~~~l~~~----~d~~~~L~el~RvLkPGG~lvis~P~~---~~~~~e---- 266 (555)
+. +.++|+.. .|+ ..++||+|+|++ ++|++ ++...+++++.|+|||||+|+++.... +.....
T Consensus 135 i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~-~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~ 213 (263)
T 2a14_A 135 VKRVLKCDVHLGNPLAPAVLPLADCVLTLL-AMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC 213 (263)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEES-CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred hheEEeccccCCCCCCccccCCCCEeeehH-HHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeec
Confidence 22 77888766 343 357899999998 47764 455679999999999999999986321 000000
Q ss_pred hHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 267 NRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 267 ~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
..-.-+++.+++++.||+++.....
T Consensus 214 ~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 214 VALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp CCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred cccCHHHHHHHHHHCCCEEEEEeec
Confidence 0001247888999999998866553
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-12 Score=124.46 Aligned_cols=101 Identities=16% Similarity=0.226 Sum_probs=81.6
Q ss_pred CCEEEEECCCCcHHH-HHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 156 IRNVLDVGCGVASFG-AYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a-~~La~--~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
..+|||+|||+|.++ ..++. ..++++|+++.++..+... +...+.++.+..+|+..+++++++||+|++.. +++|
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~-~l~~ 101 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENF-SRENNFKLNISKGDIRKLPFKDESMSFVYSYG-TIFH 101 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHH-HHHHTCCCCEEECCTTSCCSCTTCEEEEEECS-CGGG
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHH-HHhcCCceEEEECchhhCCCCCCceeEEEEcC-hHHh
Confidence 368999999999874 44443 3688999999888766643 33345678899999999999889999999887 5777
Q ss_pred c--cchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 233 L--QRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 233 ~--~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
. .+...++.++.++|||||+++++.+
T Consensus 102 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 102 MRKNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 7 6678899999999999999999764
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.8e-13 Score=133.58 Aligned_cols=133 Identities=11% Similarity=0.027 Sum_probs=91.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHH-----------------HcCCCeEEEEeCCCCCCCC
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFAL-----------------ERGIPSTLGVLGTKRLPYP 216 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~-----------------~rg~~v~~~~~d~~~Lp~~ 216 (555)
..+|||+|||+|..+..|++. .|+|+|+|+.++..+..+... ..+.++.+.++|+..++++
T Consensus 69 ~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~ 148 (252)
T 2gb4_A 69 GLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRA 148 (252)
T ss_dssp SCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGG
T ss_pred CCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCcc
Confidence 468999999999999999975 688888888877655422210 0135789999999999876
Q ss_pred C-CCccEEEecccccccccc--hHHHHHHHHhhcCCCcEEEEEcCC-C--CCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 217 S-RSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSPE-A--YAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 217 d-~sFDlVv~s~~~l~~~~d--~~~~L~el~RvLkPGG~lvis~P~-~--~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
+ ++||+|++.. ++++++. ...+++++.|+|||||+|++++.. . ....+...-.-+++.+++.. +|+++..+.
T Consensus 149 ~~~~FD~V~~~~-~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~~~~ 226 (252)
T 2gb4_A 149 NIGKFDRIWDRG-ALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQCLEE 226 (252)
T ss_dssp CCCCEEEEEESS-STTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEEEEE
T ss_pred cCCCEEEEEEhh-hhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEEEEec
Confidence 4 8999999876 4666643 356899999999999999754311 0 00000000012467777776 598876654
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-12 Score=138.33 Aligned_cols=130 Identities=18% Similarity=0.186 Sum_probs=94.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc-
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW- 232 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~- 232 (555)
..+|||+|||+|.++..+++. .|+++|+++.++..+..+. ...+..+.+..+|+...+.++++||+|+|+. .+|+
T Consensus 234 ~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~-~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~np-p~~~~ 311 (381)
T 3dmg_A 234 GRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGL-EANALKAQALHSDVDEALTEEARFDIIVTNP-PFHVG 311 (381)
T ss_dssp TCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHH-HHTTCCCEEEECSTTTTSCTTCCEEEEEECC-CCCTT
T ss_pred CCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHH-HHcCCCeEEEEcchhhccccCCCeEEEEECC-chhhc
Confidence 468999999999999999875 6889999888887666443 4456678999999988877778999999876 4666
Q ss_pred ----ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEE
Q 008748 233 ----LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 233 ----~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~ 288 (555)
..+...++.++.++|||||.++++............+.+..++.+ ++.||+++..
T Consensus 312 ~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~~v~~l-~~~gF~Vl~a 370 (381)
T 3dmg_A 312 GAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFGAFQTL-KVAEYKVLFA 370 (381)
T ss_dssp CSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHSCCEEE-EESSSEEEEE
T ss_pred ccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhccEEEE-eCCCEEEEEE
Confidence 345577999999999999999998876532222222223333333 4555555543
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-11 Score=114.50 Aligned_cols=133 Identities=16% Similarity=0.144 Sum_probs=92.9
Q ss_pred eeeeCCCCCCCCcc-HHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHH
Q 008748 118 KINFPGGGTHFHDG-ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQ 194 (555)
Q Consensus 118 ~~~F~~~g~~f~~~-a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~ 194 (555)
.+.|......|... .+...+.+.+.+.. .+..+|||+|||+|.++..+++. .++++|+++.++..+..+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~ 93 (194)
T 1dus_A 22 KLKFKTDSGVFSYGKVDKGTKILVENVVV--------DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKEN 93 (194)
T ss_dssp EEEEEEETTSTTTTSCCHHHHHHHHHCCC--------CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH
T ss_pred ceEEEeCCCcCCccccchHHHHHHHHccc--------CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHH
Confidence 44453333344433 22344555555542 23468999999999999999864 688899988887666644
Q ss_pred HHHHcCCC--eEEEEeCCCCCCCCCCCccEEEeccccccc-ccchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 195 FALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDW-LQRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 195 ~A~~rg~~--v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~-~~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
.......+ +.+..+|+.. ++++++||+|++.. .+++ ..+...+++++.++|+|||.+++..+..
T Consensus 94 ~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~-~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 94 IKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNP-PIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp HHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECC-CSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred HHHcCCCccceEEEECchhc-ccccCCceEEEECC-CcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 43322233 8899898766 34467899999876 4555 3556789999999999999999988764
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-12 Score=130.23 Aligned_cols=99 Identities=20% Similarity=0.402 Sum_probs=80.3
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
..+|||||||+|.++..|++. .++++|+++.++ +.++++.... +.++|+..+++++++||+|++....+|+.
T Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l-----~~a~~~~~~~-~~~~d~~~~~~~~~~fD~v~~~~~~~~~~ 128 (260)
T 2avn_A 55 PCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEML-----EVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYV 128 (260)
T ss_dssp CCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHH-----HHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred CCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHH-----HHHHhhcCCC-EEECcHHHCCCCCCCEEEEEEcchhhhcc
Confidence 358999999999999999875 567777766555 4444443332 78889999999889999999887666776
Q ss_pred cchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 234 QRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 234 ~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
.++..+++++.++|||||.++++.+..
T Consensus 129 ~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 129 ENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred ccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 888999999999999999999988764
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.9e-12 Score=121.85 Aligned_cols=102 Identities=24% Similarity=0.382 Sum_probs=80.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
..+|||+|||+|.++..+++. .++++|+++.++..+..+.. ...++.+.++|+..+++++++||+|++.. ++++
T Consensus 43 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~--~~~~i~~~~~d~~~~~~~~~~fD~v~~~~-~~~~ 119 (215)
T 2pxx_A 43 EDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYA--HVPQLRWETMDVRKLDFPSASFDVVLEKG-TLDA 119 (215)
T ss_dssp TCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTT--TCTTCEEEECCTTSCCSCSSCEEEEEEES-HHHH
T ss_pred CCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcc--cCCCcEEEEcchhcCCCCCCcccEEEECc-chhh
Confidence 358999999999999999864 67888888776655443222 12468899999998998889999999876 3433
Q ss_pred c---------------cchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 233 L---------------QRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 233 ~---------------~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
. .+...++.++.++|||||.+++.++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 3 355779999999999999999998764
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.3e-13 Score=135.28 Aligned_cols=102 Identities=11% Similarity=0.120 Sum_probs=76.7
Q ss_pred CCEEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCC-------eEEEEeCC------CCC--CCCC
Q 008748 156 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIP-------STLGVLGT------KRL--PYPS 217 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~rg~~-------v~~~~~d~------~~L--p~~d 217 (555)
..+|||||||+|..+..++. ..|+|+|+++.++..++.+.. +.+.. +.+.+.++ ..+ ++++
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~-~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYN-KLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHH-HHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHH-hccccccccccccchhhhhcccchhhhhhhccccC
Confidence 46899999999976554443 268999999999987775433 33322 45777776 323 3567
Q ss_pred CCccEEEecccccccc---cchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 218 RSFELAHCSRCRIDWL---QRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 218 ~sFDlVv~s~~~l~~~---~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
++||+|+|.+ ++||. ++...+++++.|+|||||+|++++|.
T Consensus 128 ~~FD~V~~~~-~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 128 GKFNIIDWQF-AIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SCEEEEEEES-CGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCeeEEEECc-hHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 8999999988 57775 34477999999999999999999876
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-11 Score=117.41 Aligned_cols=120 Identities=13% Similarity=-0.025 Sum_probs=91.3
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|||+|||+|.++..+++. .|+++|+++.++..+..+ +...+. ++.+..+|+........+||+|++.. .+
T Consensus 56 ~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~-~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~-~~- 132 (204)
T 3njr_A 56 GELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKN-IDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGG-GG- 132 (204)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECS-CC-
T ss_pred CCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHcCCCCCEEEEeCchhhhcccCCCCCEEEECC-cc-
Confidence 468999999999999998864 688999998888666644 333443 58899999877332335799999765 23
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
+.. ++.++.++|||||+++++.... ....++.+.+++.|+++.....
T Consensus 133 ---~~~-~l~~~~~~LkpgG~lv~~~~~~--------~~~~~~~~~l~~~g~~i~~i~~ 179 (204)
T 3njr_A 133 ---SQA-LYDRLWEWLAPGTRIVANAVTL--------ESETLLTQLHARHGGQLLRIDI 179 (204)
T ss_dssp ---CHH-HHHHHHHHSCTTCEEEEEECSH--------HHHHHHHHHHHHHCSEEEEEEE
T ss_pred ---cHH-HHHHHHHhcCCCcEEEEEecCc--------ccHHHHHHHHHhCCCcEEEEEe
Confidence 445 9999999999999999987652 3456777888899988776544
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=8.5e-13 Score=129.09 Aligned_cols=144 Identities=15% Similarity=0.129 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEe
Q 008748 132 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVL 208 (555)
Q Consensus 132 a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~ 208 (555)
...+.+.+...+. ....+|||||||+|.++..|++. .++++|+++.++..+.. .+...+.++.+.++
T Consensus 46 ~~~~~~~l~~~~~---------~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~v~~~~~ 115 (236)
T 1zx0_A 46 ETPYMHALAAAAS---------SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD-WAPRQTHKVIPLKG 115 (236)
T ss_dssp GHHHHHHHHHHHT---------TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHH-HGGGCSSEEEEEES
T ss_pred HHHHHHHHHhhcC---------CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHH-HHHhcCCCeEEEec
Confidence 3445555555543 22358999999999999999864 67888888887766553 33333567889999
Q ss_pred CCCCC--CCCCCCccEEEe-cccc-cc--cccchHHHHHHHHhhcCCCcEEEEEcCCCC-----CCChhhHHHH-HHHHH
Q 008748 209 GTKRL--PYPSRSFELAHC-SRCR-ID--WLQRDGILLLELDRLLRPGGYFVYSSPEAY-----AHDPENRRIW-NAMYD 276 (555)
Q Consensus 209 d~~~L--p~~d~sFDlVv~-s~~~-l~--~~~d~~~~L~el~RvLkPGG~lvis~P~~~-----~~~~e~~~~~-~~l~~ 276 (555)
|...+ ++++++||+|++ .+.. .+ +..+...+++++.|+|||||+|++.....+ .........+ +....
T Consensus 116 d~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (236)
T 1zx0_A 116 LWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVP 195 (236)
T ss_dssp CHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHH
T ss_pred CHHHhhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHHH
Confidence 98887 888899999998 4421 11 112234679999999999999998653210 0001111222 23456
Q ss_pred HHHhcCcEE
Q 008748 277 LLKSMCWKI 285 (555)
Q Consensus 277 l~~~~gw~v 285 (555)
.+.+.||..
T Consensus 196 ~l~~aGF~~ 204 (236)
T 1zx0_A 196 ALLEAGFRR 204 (236)
T ss_dssp HHHHTTCCG
T ss_pred HHHHCCCCC
Confidence 678899974
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.7e-11 Score=111.93 Aligned_cols=139 Identities=11% Similarity=0.047 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC-CCeEEEEe
Q 008748 132 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVL 208 (555)
Q Consensus 132 a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~ 208 (555)
.....+.+.+.+.. .+..+|||+|||+|.++..+++. .++++|+++.++..+..+.. ..+ .++.+..+
T Consensus 20 ~~~~~~~~~~~~~~--------~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~ 90 (183)
T 2yxd_A 20 KEEIRAVSIGKLNL--------NKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLA-KFNIKNCQIIKG 90 (183)
T ss_dssp CHHHHHHHHHHHCC--------CTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHH-HTTCCSEEEEES
T ss_pred HHHHHHHHHHHcCC--------CCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-HcCCCcEEEEEC
Confidence 34455556666543 23458999999999999999863 68899998888766664433 333 46888888
Q ss_pred CCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEE
Q 008748 209 GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 209 d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~ 288 (555)
|... ++++++||+|++... .+...++.++.++ |||.++++.+.. ....++.+.+++.||.+...
T Consensus 91 d~~~-~~~~~~~D~i~~~~~-----~~~~~~l~~~~~~--~gG~l~~~~~~~--------~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 91 RAED-VLDKLEFNKAFIGGT-----KNIEKIIEILDKK--KINHIVANTIVL--------ENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp CHHH-HGGGCCCSEEEECSC-----SCHHHHHHHHHHT--TCCEEEEEESCH--------HHHHHHHHHHHHTTCEEEEE
T ss_pred Cccc-cccCCCCcEEEECCc-----ccHHHHHHHHhhC--CCCEEEEEeccc--------ccHHHHHHHHHHcCCeEEEE
Confidence 8766 666678999998874 5567899999999 999999988653 34567888899999977765
Q ss_pred eeceEEe
Q 008748 289 KDQTVIW 295 (555)
Q Consensus 289 ~~~~~iw 295 (555)
+.....+
T Consensus 155 ~~~~~~~ 161 (183)
T 2yxd_A 155 NVFISYA 161 (183)
T ss_dssp EEEEEEE
T ss_pred Eeeeehh
Confidence 5443333
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-11 Score=113.46 Aligned_cols=119 Identities=13% Similarity=0.101 Sum_probs=87.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCC-CCCCCCCCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGT-KRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~-~~Lp~~d~sFDlVv~s~~ 228 (555)
..+|||+|||+|.++..++.. .++++|+++.++..+..+. .+.+. ++ +...|. ..++..+++||+|++..
T Consensus 26 ~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~- 102 (178)
T 3hm2_A 26 HETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNA-INLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGG- 102 (178)
T ss_dssp TEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHH-HTTTCTTSE-EEECCTTGGGGGCCSCCSEEEECC-
T ss_pred CCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHH-HHhCCCCCE-EEecchHhhhhccCCCCCEEEECC-
Confidence 458999999999999998864 5888888888776655333 33343 45 666775 34444337899999887
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
.+++ ..+++++.++|+|||++++..... .....+..++++.++++....
T Consensus 103 ~~~~----~~~l~~~~~~L~~gG~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 151 (178)
T 3hm2_A 103 GLTA----PGVFAAAWKRLPVGGRLVANAVTV--------ESEQMLWALRKQFGGTISSFA 151 (178)
T ss_dssp -TTC----TTHHHHHHHTCCTTCEEEEEECSH--------HHHHHHHHHHHHHCCEEEEEE
T ss_pred cccH----HHHHHHHHHhcCCCCEEEEEeecc--------ccHHHHHHHHHHcCCeeEEEE
Confidence 4555 568999999999999999987542 334567778888888776543
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=3.9e-12 Score=128.11 Aligned_cols=136 Identities=15% Similarity=0.157 Sum_probs=91.5
Q ss_pred CCCEEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHH----------------HHcC--------------C
Q 008748 155 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFA----------------LERG--------------I 201 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A----------------~~rg--------------~ 201 (555)
+..+|||||||+|.++..++. ..|+++|+++.++..+..... ...+ .
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 346899999999996554443 378999999888865543211 0011 0
Q ss_pred CeEEEEeCCCC-CCC-----CCCCccEEEeccccccc----ccchHHHHHHHHhhcCCCcEEEEEcCCC---CCCChh--
Q 008748 202 PSTLGVLGTKR-LPY-----PSRSFELAHCSRCRIDW----LQRDGILLLELDRLLRPGGYFVYSSPEA---YAHDPE-- 266 (555)
Q Consensus 202 ~v~~~~~d~~~-Lp~-----~d~sFDlVv~s~~~l~~----~~d~~~~L~el~RvLkPGG~lvis~P~~---~~~~~e-- 266 (555)
.+.+..+|+.. +|+ ++++||+|+|+. +++| .++...+|+++.|+|||||+|+++.... +.....
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~ 229 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAF-CLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL 229 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEES-CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehh-hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeee
Confidence 14566778776 664 346799999988 5888 6677889999999999999999964110 000000
Q ss_pred --hHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 267 --NRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 267 --~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
..-.-+++.+++++.||+++.....
T Consensus 230 ~~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 230 TVVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred eeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 0001347788999999998876543
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=119.48 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=93.2
Q ss_pred CCEEEEECCC-CcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC-CCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCG-VASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCG-tG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L-p~~d~sFDlVv~s~~~l 230 (555)
..+|||+||| +|.++..++.. .|+++|+++.++..+..+ +...+.++.+.++|...+ ++++++||+|+++.. .
T Consensus 56 ~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp-~ 133 (230)
T 3evz_A 56 GEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRN-IERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP-Y 133 (230)
T ss_dssp SCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHH-HHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC-C
T ss_pred CCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-HHHhCCCcEEEeCCchhhhhcccCceeEEEECCC-C
Confidence 4689999999 99999988763 688999999888766644 344455889999996433 456789999997642 2
Q ss_pred cccc-------------------chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 231 DWLQ-------------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 231 ~~~~-------------------d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
++.. ....++.++.++|||||++++..|... ....++.+++++.||.+...+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------~~~~~~~~~l~~~g~~~~~~~ 204 (230)
T 3evz_A 134 YDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE-------KLLNVIKERGIKLGYSVKDIK 204 (230)
T ss_dssp C---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH-------HHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH-------hHHHHHHHHHHHcCCceEEEE
Confidence 2211 136789999999999999999876531 345678888999999776543
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.30 E-value=7.9e-12 Score=122.77 Aligned_cols=124 Identities=11% Similarity=0.059 Sum_probs=93.0
Q ss_pred CCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCC---CCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP---SRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~---d~sFDlVv~s~~ 228 (555)
..+|||||||+|.++..|+. ..|+++|+++.++..+..+.......++.+..+|+..++++ +++||+|+|..
T Consensus 71 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~- 149 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA- 149 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC-
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec-
Confidence 46899999999999988883 36889999998887666443333223689999998777754 57899999765
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
..+...++.++.++|+|||++++...... .....++.+.++..||.+.....
T Consensus 150 ----~~~~~~~l~~~~~~LkpgG~l~~~~g~~~------~~~~~~~~~~l~~~g~~~~~~~~ 201 (240)
T 1xdz_A 150 ----VARLSVLSELCLPLVKKNGLFVALKAASA------EEELNAGKKAITTLGGELENIHS 201 (240)
T ss_dssp ----CSCHHHHHHHHGGGEEEEEEEEEEECC-C------HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ----cCCHHHHHHHHHHhcCCCCEEEEEeCCCc------hHHHHHHHHHHHHcCCeEeEEEE
Confidence 25568899999999999999998643221 12345677788999998876543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.9e-12 Score=126.94 Aligned_cols=99 Identities=15% Similarity=0.255 Sum_probs=81.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
..+|||+|||+|.++..|++. .|+++|+++.++..+... +...+.++.+..+|+..+++ +++||+|+|+. +++|.
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~-~~~~~ 197 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNET-KEKENLNISTALYDINAANI-QENYDFIVSTV-VFMFL 197 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCCEEEEECCGGGCCC-CSCEEEEEECS-SGGGS
T ss_pred CCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHH-HHHcCCceEEEEeccccccc-cCCccEEEEcc-chhhC
Confidence 358999999999999999875 688999998888666643 34445689999999988887 68999999887 68877
Q ss_pred cch--HHHHHHHHhhcCCCcEEEEEc
Q 008748 234 QRD--GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 234 ~d~--~~~L~el~RvLkPGG~lvis~ 257 (555)
.+. ..++.++.++|+|||+++++.
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 198 NRERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 544 479999999999999988765
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.30 E-value=7.3e-12 Score=122.85 Aligned_cols=102 Identities=20% Similarity=0.332 Sum_probs=82.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
..+|||+|||+|.++..|++. .++++|+++.++..+..+ +...+.++.+.++|+..++++ ++||+|+|..+.+++.
T Consensus 42 ~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~-~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~ 119 (252)
T 1wzn_A 42 VRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRK-AKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYF 119 (252)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGGS
T ss_pred CCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHH-HHhcCCceEEEECChhhcccC-CCccEEEEcCCchhcC
Confidence 468999999999999999864 688899988888666643 344466789999999888876 6899999875455554
Q ss_pred --cchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 234 --QRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 234 --~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
.+...++.++.++|+|||.+++..|.
T Consensus 120 ~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 120 DEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 34567999999999999999997765
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.6e-12 Score=118.73 Aligned_cols=133 Identities=13% Similarity=0.076 Sum_probs=89.1
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCC-CCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLP-YPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp-~~d~sFDlVv~s~ 227 (555)
..+|||+|||+|.++..+++. .++++|+++.++..+..+. ...+ .++.+..+|+..++ +.+++||+|++..
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 101 (197)
T 3eey_A 23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKL-TDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNL 101 (197)
T ss_dssp TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHH-HHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEE
T ss_pred CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCCeEEEECCHHHHhhhccCCceEEEEcC
Confidence 358999999999999988763 6889999998887766443 3333 36889999987775 5668999999875
Q ss_pred ccccc--------ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 228 CRIDW--------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 228 ~~l~~--------~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
..+.. ..+...++.++.++|||||+++++.........+......+....+...+|.+...+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~ 171 (197)
T 3eey_A 102 GYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTD 171 (197)
T ss_dssp SBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEE
T ss_pred CcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 32221 113356999999999999999998744321112122222222223344567766443
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.4e-12 Score=118.51 Aligned_cols=135 Identities=14% Similarity=0.064 Sum_probs=93.0
Q ss_pred eeeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHH
Q 008748 118 KINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQ 194 (555)
Q Consensus 118 ~~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~ 194 (555)
.+..+. ..+.+..+...+.+.+.+.... ..+..+|||+|||+|.++..++.. .|+++|+++.++..++.+
T Consensus 14 ~l~~~~--~~~rp~~~~~~~~l~~~l~~~~-----~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~ 86 (189)
T 3p9n_A 14 RIAVPP--RGTRPTTDRVRESLFNIVTARR-----DLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARN 86 (189)
T ss_dssp EEECCS--CCC---CHHHHHHHHHHHHHHS-----CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHH
T ss_pred EecCCC--CCCccCcHHHHHHHHHHHHhcc-----CCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHH
Confidence 344444 2344444555555555553210 023468999999999999977653 589999999988777755
Q ss_pred HHHHcCCCeEEEEeCCCCCC--CCCCCccEEEecccccccc-cchHHHHHHHHh--hcCCCcEEEEEcCCC
Q 008748 195 FALERGIPSTLGVLGTKRLP--YPSRSFELAHCSRCRIDWL-QRDGILLLELDR--LLRPGGYFVYSSPEA 260 (555)
Q Consensus 195 ~A~~rg~~v~~~~~d~~~Lp--~~d~sFDlVv~s~~~l~~~-~d~~~~L~el~R--vLkPGG~lvis~P~~ 260 (555)
.......++.+.++|+..++ +++++||+|++.. ..++. ++...++.++.+ +|+|||.+++..+..
T Consensus 87 ~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~-p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 87 IEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP-PYNVDSADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp HHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC-CTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred HHHcCCCceEEEEccHHHHHhhccCCCccEEEECC-CCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 44433347899999976653 4468899999876 35553 566789999999 999999999987553
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.2e-12 Score=122.25 Aligned_cols=117 Identities=22% Similarity=0.348 Sum_probs=89.3
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCC-CCCCCC-CCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT-KRLPYP-SRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~-~~Lp~~-d~sFDlVv~s~~~l~ 231 (555)
..+|||||||+|.++..|++. .|+++|+++.++ +.++++..++.+.++|. ..+|++ +++||+|+|+.
T Consensus 49 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~-----~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~---- 119 (226)
T 3m33_A 49 QTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELL-----KLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR---- 119 (226)
T ss_dssp TCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHH-----HHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES----
T ss_pred CCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHH-----HHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC----
Confidence 368999999999999999975 566777666554 55555567899999998 678888 89999999762
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeeceE
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTV 293 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~~~ 293 (555)
+...++.++.++|||||.++...... . ...+.+.+++.||..+.......
T Consensus 120 ---~~~~~l~~~~~~LkpgG~l~~~~~~~--~-------~~~~~~~l~~~Gf~~~~~~~~~~ 169 (226)
T 3m33_A 120 ---GPTSVILRLPELAAPDAHFLYVGPRL--N-------VPEVPERLAAVGWDIVAEDHVSV 169 (226)
T ss_dssp ---CCSGGGGGHHHHEEEEEEEEEEESSS--C-------CTHHHHHHHHTTCEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCcEEEEeCCcC--C-------HHHHHHHHHHCCCeEEEEEeeee
Confidence 45668999999999999999332211 1 13567888999999887665543
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.6e-12 Score=120.39 Aligned_cols=134 Identities=17% Similarity=0.129 Sum_probs=94.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHH----HcC-CCeEEEEeCCCCCCCCCCCccEEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFAL----ERG-IPSTLGVLGTKRLPYPSRSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~----~rg-~~v~~~~~d~~~Lp~~d~sFDlVv~s 226 (555)
..+|||||||+|.++..|++. .|+++|+++.++.... +.|+ ..+ .++.+.++|+..+|+++++ |.|+..
T Consensus 28 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~-~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~ 105 (218)
T 3mq2_A 28 DDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKIS-AKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVL 105 (218)
T ss_dssp SEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHH-HHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEE
Confidence 458999999999999999864 6999999998886543 2222 223 3689999999999998776 777632
Q ss_pred c--ccc--ccccchHHHHHHHHhhcCCCcEEEEEcCCCC--------CCCh--hhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 227 R--CRI--DWLQRDGILLLELDRLLRPGGYFVYSSPEAY--------AHDP--ENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 227 ~--~~l--~~~~d~~~~L~el~RvLkPGG~lvis~P~~~--------~~~~--e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
. +.+ ++.+++..+++++.|+|||||.++++..... ...+ .....-+.+..++++.||++......
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~~~~ 184 (218)
T 3mq2_A 106 MPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADCRYL 184 (218)
T ss_dssp SCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceeeecc
Confidence 2 122 2667778899999999999999999642210 0000 11112235888999999998876543
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.9e-12 Score=116.01 Aligned_cols=115 Identities=12% Similarity=0.023 Sum_probs=87.6
Q ss_pred CEEEEECCCCcHHHHHHhcC-CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 235 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~-~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d 235 (555)
.+|||+|||+|.++..|++. .|+++|+++.++.. ..++.+.++|+.. ++++++||+|+++. .+++..+
T Consensus 25 ~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~~~~~---------~~~~~~~~~d~~~-~~~~~~fD~i~~n~-~~~~~~~ 93 (170)
T 3q87_B 25 KIVLDLGTSTGVITEQLRKRNTVVSTDLNIRALES---------HRGGNLVRADLLC-SINQESVDVVVFNP-PYVPDTD 93 (170)
T ss_dssp CEEEEETCTTCHHHHHHTTTSEEEEEESCHHHHHT---------CSSSCEEECSTTT-TBCGGGCSEEEECC-CCBTTCC
T ss_pred CeEEEeccCccHHHHHHHhcCcEEEEECCHHHHhc---------ccCCeEEECChhh-hcccCCCCEEEECC-CCccCCc
Confidence 58999999999999999876 57777777665532 4567889999876 66668999999876 4554333
Q ss_pred h---------HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 236 D---------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 236 ~---------~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
. ..++.++.+.| |||.++++.+.. ...+++.+++++.||+.+.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~--------~~~~~l~~~l~~~gf~~~~~~~~ 149 (170)
T 3q87_B 94 DPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA--------NRPKEVLARLEERGYGTRILKVR 149 (170)
T ss_dssp CTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG--------GCHHHHHHHHHHTTCEEEEEEEE
T ss_pred cccccCCcchHHHHHHHHhhC-CCCEEEEEEecC--------CCHHHHHHHHHHCCCcEEEEEee
Confidence 2 56889999999 999999977543 12356788899999988765554
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=119.80 Aligned_cols=130 Identities=14% Similarity=0.123 Sum_probs=85.5
Q ss_pred CCCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC----CCCCCCCccEEEec
Q 008748 155 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR----LPYPSRSFELAHCS 226 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~----Lp~~d~sFDlVv~s 226 (555)
++.+|||+|||+|.++..|++ ..|+++|+++.++.. +.+.|+++ .++.+.++|+.. .++. ++||+|+|.
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~-~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~ 133 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEK-LLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIYQD 133 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHH-HHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEEEC
T ss_pred CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHH-HHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEEEe
Confidence 346899999999999988875 368999999987643 33455544 467777788765 3555 789999976
Q ss_pred ccccccccchHHHHHHHHhhcCCCcEEEEEcCCCC-CCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 227 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY-AHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 227 ~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~-~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
. .+ ......++.++.|+|||||+|+++.+..- .......+.+.+..+.+++. |++++....
T Consensus 134 ~--~~-~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~ 195 (210)
T 1nt2_A 134 I--AQ-KNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-FKIVKHGSL 195 (210)
T ss_dssp C--CS-TTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT-SEEEEEEEC
T ss_pred c--cC-hhHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhh-cEEeeeecC
Confidence 3 22 22334469999999999999999853310 00111112332222236666 988876554
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=5.8e-12 Score=122.87 Aligned_cols=122 Identities=13% Similarity=0.132 Sum_probs=88.1
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC-C--CCCCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-P--YPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L-p--~~d~sFDlVv~s~~ 228 (555)
..+|||||||+|.++..|++. .|+|+|+++.++..+..+.......++.+..+|+..+ + +++++||.|++.+
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~- 113 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF- 113 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES-
T ss_pred CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC-
Confidence 458999999999999999853 5899999999887776444333334689999997664 3 6789999999875
Q ss_pred ccccccch--------HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhc-CcEEE
Q 008748 229 RIDWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWKIV 286 (555)
Q Consensus 229 ~l~~~~d~--------~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~-gw~vv 286 (555)
...|.... ..++.++.|+|||||+|++++... ...+.+..++... +|+.+
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~--------~~~~~~~~~~~~~~~~~~~ 172 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWE--------PYAEHMLEVMSSIDGYKNL 172 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCH--------HHHHHHHHHHHTSTTEEEC
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCH--------HHHHHHHHHHHhCCCcccc
Confidence 34444322 259999999999999999987542 2234455555543 56544
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=7.4e-12 Score=127.67 Aligned_cols=104 Identities=18% Similarity=0.327 Sum_probs=82.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHH-------cCCCeEEEEeCCCCCC----CC--CCC
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE-------RGIPSTLGVLGTKRLP----YP--SRS 219 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~-------rg~~v~~~~~d~~~Lp----~~--d~s 219 (555)
..+|||||||+|.++..+++. .++++|+++.++..+..+.... ...++.+.++|+..++ ++ +++
T Consensus 35 ~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 114 (313)
T 3bgv_A 35 DITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMC 114 (313)
T ss_dssp CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTCC
T ss_pred CCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCCC
Confidence 458999999999999988853 6889999988887666544332 2235789999988876 53 458
Q ss_pred ccEEEecccccccc-c---chHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 220 FELAHCSRCRIDWL-Q---RDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 220 FDlVv~s~~~l~~~-~---d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
||+|+|+. ++||. . +...++.++.++|||||+|++++|..
T Consensus 115 fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 115 FDICSCQF-VCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp EEEEEEET-CGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred EEEEEEec-chhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 99999988 68887 3 34679999999999999999998763
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5.6e-12 Score=124.08 Aligned_cols=135 Identities=15% Similarity=0.162 Sum_probs=94.8
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC------------------------------
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI------------------------------ 201 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~------------------------------ 201 (555)
+..+|||||||+|.++..++.. .|+++|+++.++..+..... ..+.
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLK-KEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHT-TCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHh-cCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 3468999999999999888764 67888888887765543321 1110
Q ss_pred Ce-EEEEeCCCCCC-CCC---CCccEEEecccccc----cccchHHHHHHHHhhcCCCcEEEEEcCCCCCC---Chh--h
Q 008748 202 PS-TLGVLGTKRLP-YPS---RSFELAHCSRCRID----WLQRDGILLLELDRLLRPGGYFVYSSPEAYAH---DPE--N 267 (555)
Q Consensus 202 ~v-~~~~~d~~~Lp-~~d---~sFDlVv~s~~~l~----~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~---~~e--~ 267 (555)
.+ .+.++|+..++ +++ ++||+|+|.. +++ +..+...++.++.++|||||+|+++.+..... ... .
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~-~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~ 213 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTL-CLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFS 213 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEES-CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhh-hhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccc
Confidence 16 78889987654 355 8999999988 577 55567889999999999999999976431100 000 0
Q ss_pred --HHHHHHHHHHHHhcCcEEEEEeec
Q 008748 268 --RRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 268 --~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
.-.-+++.+++++.||+++.....
T Consensus 214 ~~~~~~~~~~~~l~~aGf~~~~~~~~ 239 (265)
T 2i62_A 214 SLPLGWETVRDAVEEAGYTIEQFEVI 239 (265)
T ss_dssp CCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred ccccCHHHHHHHHHHCCCEEEEEEEe
Confidence 001237788999999998876654
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=4.1e-11 Score=111.36 Aligned_cols=132 Identities=14% Similarity=0.192 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC--CCeEEEEe
Q 008748 133 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVL 208 (555)
Q Consensus 133 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~ 208 (555)
......+.+.+.. .+..+|||+|||+|.++..++.. .++++|+++..+..+..+.. ..+ ..+.+..+
T Consensus 19 ~~~~~~~~~~~~~--------~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~-~~~~~~~~~~~~~ 89 (192)
T 1l3i_A 19 MEVRCLIMCLAEP--------GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQ-RHGLGDNVTLMEG 89 (192)
T ss_dssp HHHHHHHHHHHCC--------CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHH-HTTCCTTEEEEES
T ss_pred HHHHHHHHHhcCC--------CCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHH-HcCCCcceEEEec
Confidence 4444455555542 23468999999999999999874 68888988887766654433 333 36788888
Q ss_pred CCCCCCCCC-CCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 209 GTKRLPYPS-RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 209 d~~~Lp~~d-~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
|... ++++ ++||+|++... ++ +...++.++.++|+|||.+++..+.. ....++.+++++.||.+.
T Consensus 90 d~~~-~~~~~~~~D~v~~~~~-~~---~~~~~l~~~~~~l~~gG~l~~~~~~~--------~~~~~~~~~l~~~g~~~~ 155 (192)
T 1l3i_A 90 DAPE-ALCKIPDIDIAVVGGS-GG---ELQEILRIIKDKLKPGGRIIVTAILL--------ETKFEAMECLRDLGFDVN 155 (192)
T ss_dssp CHHH-HHTTSCCEEEEEESCC-TT---CHHHHHHHHHHTEEEEEEEEEEECBH--------HHHHHHHHHHHHTTCCCE
T ss_pred CHHH-hcccCCCCCEEEECCc-hH---HHHHHHHHHHHhcCCCcEEEEEecCc--------chHHHHHHHHHHCCCceE
Confidence 8654 2232 58999998763 33 34779999999999999999987642 345677888899999443
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=122.52 Aligned_cols=126 Identities=13% Similarity=-0.001 Sum_probs=93.4
Q ss_pred CCCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCC---CCCccEEEecc
Q 008748 155 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP---SRSFELAHCSR 227 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~---d~sFDlVv~s~ 227 (555)
...+|||||||+|..+..|+. ..|+++|+++.++..+..+.......++.+..+|++.++.. +++||+|+|..
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a 159 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARA 159 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEES
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECC
Confidence 356899999999999888874 36899999998887766444333223589999998777643 47899999754
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
+ .+...++.++.++|||||+|++...... .+...++...++..||++......
T Consensus 160 -~----~~~~~ll~~~~~~LkpgG~l~~~~g~~~------~~e~~~~~~~l~~~G~~~~~~~~~ 212 (249)
T 3g89_A 160 -V----APLCVLSELLLPFLEVGGAAVAMKGPRV------EEELAPLPPALERLGGRLGEVLAL 212 (249)
T ss_dssp -S----CCHHHHHHHHGGGEEEEEEEEEEECSCC------HHHHTTHHHHHHHHTEEEEEEEEE
T ss_pred -c----CCHHHHHHHHHHHcCCCeEEEEEeCCCc------HHHHHHHHHHHHHcCCeEEEEEEe
Confidence 2 3457799999999999999998653311 134456777788899988765543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.1e-11 Score=117.04 Aligned_cols=121 Identities=10% Similarity=0.091 Sum_probs=93.9
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHH-cCCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALE-RGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~-rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
..+|||+|||+|.++..+++. .++++|+++..+..+..+.... ...++.+...|+...++++++||+|++.
T Consensus 97 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~--- 173 (258)
T 2pwy_A 97 GMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALD--- 173 (258)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEE---
T ss_pred CCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEEC---
Confidence 468999999999999888753 6889999888877666544433 2356889999988888888899999963
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
.+++..++.++.++|+|||++++..|.. ....++...+++.||..+....
T Consensus 174 ---~~~~~~~l~~~~~~L~~gG~l~~~~~~~--------~~~~~~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 174 ---LMEPWKVLEKAALALKPDRFLVAYLPNI--------TQVLELVRAAEAHPFRLERVLE 223 (258)
T ss_dssp ---SSCGGGGHHHHHHHEEEEEEEEEEESCH--------HHHHHHHHHHTTTTEEEEEEEE
T ss_pred ---CcCHHHHHHHHHHhCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCceEEEEE
Confidence 2455678999999999999999988763 2345666777889998776544
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-11 Score=120.26 Aligned_cols=122 Identities=16% Similarity=0.102 Sum_probs=86.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHH-----c-CCCeEEEEeCCCC-CC--CCCCCccE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE-----R-GIPSTLGVLGTKR-LP--YPSRSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~-----r-g~~v~~~~~d~~~-Lp--~~d~sFDl 222 (555)
..+|||||||+|.++..|++. .++|+|+++.++..+..+.... . ..++.+..+|+.. ++ +++++||.
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~ 126 (235)
T 3ckk_A 47 QVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTK 126 (235)
T ss_dssp CEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEE
T ss_pred CCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeE
Confidence 358999999999999999864 5889999998887665443221 2 2468999999876 66 78899999
Q ss_pred EEecccccccccc--------hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcC-cEEE
Q 008748 223 AHCSRCRIDWLQR--------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIV 286 (555)
Q Consensus 223 Vv~s~~~l~~~~d--------~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g-w~vv 286 (555)
|++.+. ..|... ...++.++.++|||||.|++++... .....+.+.+...+ |..+
T Consensus 127 v~~~~~-dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~--------~~~~~~~~~l~~~~~f~~~ 190 (235)
T 3ckk_A 127 MFFLFP-DPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVL--------ELHDWMCTHFEEHPLFERV 190 (235)
T ss_dssp EEEESC-C-----------CCCHHHHHHHHHHEEEEEEEEEEESCH--------HHHHHHHHHHHTSTTEEEE
T ss_pred EEEeCC-CchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCcccc
Confidence 987652 333221 1369999999999999999976542 23345556666665 5443
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=9e-11 Score=120.72 Aligned_cols=131 Identities=15% Similarity=0.098 Sum_probs=94.9
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEeccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~ 228 (555)
+..+|||||||+|.++..+++. .++++|+ +..+..+..... +.+ .++.+..+|+. .+++. +||+|++.+
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~-~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~- 243 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFL-DTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSA- 243 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH-HTTCTTTEEEEECCTT-SCCCC-SCSEEEEES-
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhh-hcCcCcCeEEecCCCC-CCCCC-CCcEEEEeh-
Confidence 4579999999999999998863 5778888 766655553333 333 46899999986 45554 799999988
Q ss_pred ccccccch--HHHHHHHHhhcCCCcEEEEEcCCCCCCCh---hhHH----------HHHHHHHHHHhcCcEEEEEee
Q 008748 229 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDP---ENRR----------IWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 229 ~l~~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~~~~---e~~~----------~~~~l~~l~~~~gw~vv~~~~ 290 (555)
++|+.+++ ..+++++.++|+|||++++..+......+ .+.. ..+++.+++++.||+++....
T Consensus 244 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 320 (332)
T 3i53_A 244 VLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHP 320 (332)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred hhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 57777765 67999999999999999997754221100 0001 124788999999999886654
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.22 E-value=4e-11 Score=118.56 Aligned_cols=132 Identities=11% Similarity=0.088 Sum_probs=92.4
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCC---CCCCCCCCccEEEec
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK---RLPYPSRSFELAHCS 226 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~---~Lp~~d~sFDlVv~s 226 (555)
++.+|||+|||+|.++..|++. .|+++|+++.++..+. +.+.+ ..++..+.+|.. ..++..+++|+|++.
T Consensus 77 pG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~-~~a~~-~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 77 EGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLL-TVVRD-RRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHH-HHSTT-CTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-HhhHh-hcCeeEEEEeccCccccccccceEEEEEEe
Confidence 4469999999999999999863 5899999998886554 33333 246777777753 345667889999864
Q ss_pred ccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCC-CChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 227 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-HDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 227 ~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~-~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
+.+..+...++.++.++|||||+++++....-. ........+.+..+.+++.||++++..+.
T Consensus 155 ---~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i~L 217 (233)
T 4df3_A 155 ---VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVHL 217 (233)
T ss_dssp ---CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ---ccCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 344566678999999999999999997532100 00000123455567788899998876543
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-10 Score=121.44 Aligned_cols=132 Identities=11% Similarity=0.030 Sum_probs=95.6
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
+..+|||||||+|.++..++++ .++++|+ +..+..+........ ..++.+..+|+. .+++. .||+|++.+ +
T Consensus 202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~-v 277 (369)
T 3gwz_A 202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD-GADVYLIKH-V 277 (369)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEES-C
T ss_pred cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-CceEEEhhh-h
Confidence 4579999999999999999864 5778888 766665554333222 246899999986 56665 799999988 5
Q ss_pred cccccchH--HHHHHHHhhcCCCcEEEEEcCCCCCC-Chh--h--HH----------HHHHHHHHHHhcCcEEEEEee
Q 008748 230 IDWLQRDG--ILLLELDRLLRPGGYFVYSSPEAYAH-DPE--N--RR----------IWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 230 l~~~~d~~--~~L~el~RvLkPGG~lvis~P~~~~~-~~e--~--~~----------~~~~l~~l~~~~gw~vv~~~~ 290 (555)
+|+.++.. .+|+++.++|+|||++++..+..... ... . .. ..+++.+++++.||+++....
T Consensus 278 lh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 355 (369)
T 3gwz_A 278 LHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLP 355 (369)
T ss_dssp GGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEEE
T ss_pred hccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEEE
Confidence 77777665 69999999999999999976432111 111 0 00 124788999999999887654
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-11 Score=119.99 Aligned_cols=135 Identities=13% Similarity=0.068 Sum_probs=83.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCC-hhhhhHH---HHHHHHHcC-CCeEEEEeCCCCCCCC-CCCccEEEe
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLA-PNDVHEN---QIQFALERG-IPSTLGVLGTKRLPYP-SRSFELAHC 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis-~~dls~a---~i~~A~~rg-~~v~~~~~d~~~Lp~~-d~sFDlVv~ 225 (555)
..+|||||||+|.++..|+.. .|+|+|++ +.++..+ + +.+.+.+ .++.+..+|+..+|.. .+.+|.|++
T Consensus 25 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~-~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~ 103 (225)
T 3p2e_A 25 DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKII-KKPSKGGLSNVVFVIAAAESLPFELKNIADSISI 103 (225)
T ss_dssp SEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHT-SCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred CCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH-HHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence 358999999999999999842 58899999 5444333 2 1222333 3588999999888632 134555554
Q ss_pred cccc----cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCC---------hhhHHHH-H--HHHHHHHhcCcEEEEEe
Q 008748 226 SRCR----IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHD---------PENRRIW-N--AMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 226 s~~~----l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~---------~e~~~~~-~--~l~~l~~~~gw~vv~~~ 289 (555)
++.. .+...+...++.++.|+|||||+|+++........ +.....| . ++.+++++.||++...+
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~~~ 183 (225)
T 3p2e_A 104 LFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDDVK 183 (225)
T ss_dssp ESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEEEE
T ss_pred eCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeeeee
Confidence 3210 01112335689999999999999999332111000 0000111 1 48889999999988665
Q ss_pred ec
Q 008748 290 DQ 291 (555)
Q Consensus 290 ~~ 291 (555)
..
T Consensus 184 ~~ 185 (225)
T 3p2e_A 184 EL 185 (225)
T ss_dssp EE
T ss_pred ec
Confidence 43
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.22 E-value=6.3e-11 Score=134.33 Aligned_cols=118 Identities=16% Similarity=0.269 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHH------cCC
Q 008748 133 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALE------RGI 201 (555)
Q Consensus 133 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~------rg~ 201 (555)
....+.+.+.+.. ..+.+|||||||+|.++..|++. .|+|+|+++.++..++.+.... ...
T Consensus 707 eqRle~LLelL~~--------~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~ 778 (950)
T 3htx_A 707 KQRVEYALKHIRE--------SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK 778 (950)
T ss_dssp HHHHHHHHHHHHH--------SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCS
T ss_pred HHHHHHHHHHhcc--------cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCC
Confidence 4445555555542 13468999999999999999864 4788888888887665443322 123
Q ss_pred CeEEEEeCCCCCCCCCCCccEEEecccccccccchH--HHHHHHHhhcCCCcEEEEEcCCC
Q 008748 202 PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG--ILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 202 ~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~--~~L~el~RvLkPGG~lvis~P~~ 260 (555)
++.+.++|+..+++++++||+|+|.. +++|++++. .+++++.|+|||| .+++++|+.
T Consensus 779 nVefiqGDa~dLp~~d~sFDlVV~~e-VLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 779 SATLYDGSILEFDSRLHDVDIGTCLE-VIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp EEEEEESCTTSCCTTSCSCCEEEEES-CGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred ceEEEECchHhCCcccCCeeEEEEeC-chhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 58999999999999999999999987 688888765 4899999999999 888888753
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-11 Score=118.33 Aligned_cols=130 Identities=12% Similarity=0.098 Sum_probs=89.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC---CCCCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR---LPYPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~---Lp~~d~sFDlVv~s~ 227 (555)
..+|||+|||+|.++..|++. .|+++|+++.++.... +.|+.+ .++.+..+|+.. +++.+++||+|++..
T Consensus 78 ~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~-~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~ 155 (233)
T 2ipx_A 78 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLI-NLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFADV 155 (233)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHH-HHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEECC
T ss_pred CCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEcC
Confidence 468999999999999988753 6889999987664443 555554 678899999876 455668999999754
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEcCCCC-CCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY-AHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~-~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
. .......++.++.++|||||+++++.+... .........+.+-.+++++.||+++....
T Consensus 156 ~---~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 216 (233)
T 2ipx_A 156 A---QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLT 216 (233)
T ss_dssp C---CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEE
T ss_pred C---CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEe
Confidence 2 122224468899999999999999764310 01111112232225778899999886443
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.7e-11 Score=125.61 Aligned_cols=131 Identities=10% Similarity=0.111 Sum_probs=93.0
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCC--CCCCCCccEEEec
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRL--PYPSRSFELAHCS 226 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~L--p~~d~sFDlVv~s 226 (555)
...+|||||||+|.++..++++ .++++|+ +.++..+..+ +.+.+ .++.+..+|+... |++ ++||+|++.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQ-TAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHH-HTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHH-HHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 3469999999999999999863 5778887 6665544422 22233 3589999998765 566 789999998
Q ss_pred ccccccccch--HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhH---------------------HHHHHHHHHHHhcCc
Q 008748 227 RCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPENR---------------------RIWNAMYDLLKSMCW 283 (555)
Q Consensus 227 ~~~l~~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~---------------------~~~~~l~~l~~~~gw 283 (555)
. ++|+..+. ..+|+++.++|||||++++..+.......... ...+++.+++++.||
T Consensus 256 ~-vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf 334 (363)
T 3dp7_A 256 Q-FLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGL 334 (363)
T ss_dssp S-CSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTE
T ss_pred c-hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCC
Confidence 8 57665554 46899999999999999997754321111100 013478889999999
Q ss_pred EEEEEe
Q 008748 284 KIVSKK 289 (555)
Q Consensus 284 ~vv~~~ 289 (555)
+++...
T Consensus 335 ~~v~~~ 340 (363)
T 3dp7_A 335 EVEEIQ 340 (363)
T ss_dssp EESCCC
T ss_pred eEEEEE
Confidence 887554
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-11 Score=123.45 Aligned_cols=164 Identities=9% Similarity=-0.040 Sum_probs=102.3
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHH--cCC--CeEEEEeCCCCC-------CCCCCCc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE--RGI--PSTLGVLGTKRL-------PYPSRSF 220 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~--rg~--~v~~~~~d~~~L-------p~~d~sF 220 (555)
..+|||+|||+|.++..|+++ .|+++|+++.++..+..+.... .+. ++.+..+|+..+ ++++++|
T Consensus 37 ~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~f 116 (260)
T 2ozv_A 37 ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHF 116 (260)
T ss_dssp CEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCE
T ss_pred CCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCc
Confidence 458999999999999998864 5788888887775555433220 222 378999998776 3567899
Q ss_pred cEEEeccccc----------------cc-ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCc
Q 008748 221 ELAHCSRCRI----------------DW-LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 283 (555)
Q Consensus 221 DlVv~s~~~l----------------~~-~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw 283 (555)
|+|+++.... +. ......++.++.++|||||+|++..+.. ...++...+++. |
T Consensus 117 D~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------~~~~~~~~l~~~-~ 186 (260)
T 2ozv_A 117 HHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ---------SVAEIIAACGSR-F 186 (260)
T ss_dssp EEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG---------GHHHHHHHHTTT-E
T ss_pred CEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH---------HHHHHHHHHHhc-C
Confidence 9999862111 11 1224678999999999999999987652 133455666654 7
Q ss_pred EEEEEeeceEEeecCCCchhhhccCCC-----CCCCCCCC-CCCC-Ccccccc
Q 008748 284 KIVSKKDQTVIWAKPISNSCYLKRVPG-----SRPPLCSS-DDDP-DVTWNVL 329 (555)
Q Consensus 284 ~vv~~~~~~~iw~KPl~~~c~~~r~~~-----~~p~lc~~-~~~~-~~~wy~~ 329 (555)
..+..........++.+..+...++.+ ..|+++.. +++. ++.++..
T Consensus 187 ~~~~i~~v~~~~~~~~~~~lv~~~k~~~~~~~~~~~l~i~~~~~~~yt~~~~~ 239 (260)
T 2ozv_A 187 GGLEITLIHPRPGEDAVRMLVTAIKGSRARLTFRAPLIMHETGSHAFTPFVDD 239 (260)
T ss_dssp EEEEEEEEESSTTSCCCEEEEEEEETCCCCCEECCCEESSCTTCCSCCHHHHH
T ss_pred CceEEEEEcCCCCCCceEEEEEEEeCCCCCceecCCEEEECCCCCCCCHHHHH
Confidence 655444433222344444444444433 23556654 3334 4444443
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-11 Score=121.38 Aligned_cols=120 Identities=9% Similarity=0.133 Sum_probs=91.8
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHc-C-CCeEEEEeCCCCCCCCCCCccEEEecc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER-G-IPSTLGVLGTKRLPYPSRSFELAHCSR 227 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~r-g-~~v~~~~~d~~~Lp~~d~sFDlVv~s~ 227 (555)
+..+|||+|||+|.++..+++. .++++|+++..+..+..+.. .. + .++.+..+|+.. ++++++||+|++.
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~~- 186 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLS-EFYDIGNVRTSRSDIAD-FISDQMYDAVIAD- 186 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHH-TTSCCTTEEEECSCTTT-CCCSCCEEEEEEC-
T ss_pred CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHH-hcCCCCcEEEEECchhc-cCcCCCccEEEEc-
Confidence 3468999999999999888753 68899998887766654433 22 3 468888888876 6667889999962
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
.+++..++.++.++|||||+++++++.. ....++.+.+++.||..+....
T Consensus 187 -----~~~~~~~l~~~~~~LkpgG~l~i~~~~~--------~~~~~~~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 187 -----IPDPWNHVQKIASMMKPGSVATFYLPNF--------DQSEKTVLSLSASGMHHLETVE 236 (275)
T ss_dssp -----CSCGGGSHHHHHHTEEEEEEEEEEESSH--------HHHHHHHHHSGGGTEEEEEEEE
T ss_pred -----CcCHHHHHHHHHHHcCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCeEEEEEE
Confidence 3456779999999999999999998763 2345667778889998776544
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=9.6e-11 Score=118.19 Aligned_cols=154 Identities=12% Similarity=0.094 Sum_probs=105.6
Q ss_pred CceeeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHH
Q 008748 116 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQ 192 (555)
Q Consensus 116 ~e~~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~ 192 (555)
+-++.+.-....|..........+.+.+. +..+|||+|||+|.++..++.. .|+++|+++.++..+.
T Consensus 96 g~~f~~d~~~~~f~~~~~~~~~~l~~~~~----------~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~ 165 (278)
T 2frn_A 96 GIKYKLDVAKIMFSPANVKERVRMAKVAK----------PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLV 165 (278)
T ss_dssp TEEEEEETTTSCCCGGGHHHHHHHHHHCC----------TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHH
T ss_pred CEEEEEEccceeEcCCcHHHHHHHHHhCC----------CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHH
Confidence 33444433334455554444445555432 2358999999999999999863 4899999999887777
Q ss_pred HHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHH
Q 008748 193 IQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRI 270 (555)
Q Consensus 193 i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~ 270 (555)
.+.. ..+. .+.+..+|+..++. +++||+|++... .....++.++.++|||||++++.+....... ....
T Consensus 166 ~n~~-~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p-----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~ 236 (278)
T 2frn_A 166 ENIH-LNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM--PREP 236 (278)
T ss_dssp HHHH-HTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT--TTTT
T ss_pred HHHH-HcCCCceEEEEECCHHHhcc-cCCccEEEECCc-----hhHHHHHHHHHHHCCCCeEEEEEEeeccccc--cccH
Confidence 5443 3343 37899999888876 678999997531 2335689999999999999999764321000 0123
Q ss_pred HHHHHHHHHhcCcEEEEE
Q 008748 271 WNAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 271 ~~~l~~l~~~~gw~vv~~ 288 (555)
.+.+.+.+++.||.+...
T Consensus 237 ~~~i~~~~~~~G~~~~~~ 254 (278)
T 2frn_A 237 FETFKRITKEYGYDVEKL 254 (278)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCeeEEe
Confidence 457788899999987653
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.6e-10 Score=116.30 Aligned_cols=124 Identities=10% Similarity=0.139 Sum_probs=84.6
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEE-EeCCCCCC---CCCCCccEEEecc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLG-VLGTKRLP---YPSRSFELAHCSR 227 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~-~~d~~~Lp---~~d~sFDlVv~s~ 227 (555)
...+|||||||||.++..|++. .|+++|+++.|+..+. +....+... ..++..++ ++..+||+|+|..
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~-----r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~ 159 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKL-----RQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDV 159 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHH-----HTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECC
T ss_pred cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHH-----HhCcccceecccCceecchhhCCCCCCCEEEEEe
Confidence 3468999999999999988864 6899999999886532 223333322 23333333 3445699999865
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEcCCCCC------------CChhhH-HHHHHHHHHHHhcCcEEEE
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA------------HDPENR-RIWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~------------~~~e~~-~~~~~l~~l~~~~gw~vv~ 287 (555)
+ ++ +...+|.++.|+|||||.+++...+.+. +++... ..-.++.+++...||.+..
T Consensus 160 s-f~---sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~ 228 (291)
T 3hp7_A 160 S-FI---SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKG 228 (291)
T ss_dssp S-SS---CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred e-Hh---hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 3 43 2367899999999999999987433221 112222 2445788899999998764
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-11 Score=120.88 Aligned_cols=100 Identities=11% Similarity=0.092 Sum_probs=77.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCC-----CCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPS-----RSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d-----~sFDlVv~s~~ 228 (555)
..+|||||||+|.++..|++. .|+++|+++.++..+..+. ...++.+.++|+..+++.. ..||+|++..
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~- 132 (245)
T 3ggd_A 57 ELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT- 132 (245)
T ss_dssp TSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES-
T ss_pred CCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhC---cccCceEEECcccccccccccccccCccEEEEcc-
Confidence 357999999999999999874 6888888877665444222 2347889999988765432 2489999887
Q ss_pred cccccc--chHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 229 RIDWLQ--RDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 229 ~l~~~~--d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
++++.+ +...+++++.++|||||+++++...
T Consensus 133 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 165 (245)
T 3ggd_A 133 GFHHIPVEKRELLGQSLRILLGKQGAMYLIELG 165 (245)
T ss_dssp SSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred hhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 688887 6688999999999999999887654
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=119.48 Aligned_cols=131 Identities=12% Similarity=0.168 Sum_probs=94.6
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
..+|||||||+|.++..+++. .++++|++ ..+..+..+... .+. ++.+..+|+...+++++ ||+|++.+ +
T Consensus 166 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~-~ 241 (335)
T 2r3s_A 166 PLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARI-QGVASRYHTIAGSAFEVDYGND-YDLVLLPN-F 241 (335)
T ss_dssp CSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHH-HTCGGGEEEEESCTTTSCCCSC-EEEEEEES-C
T ss_pred CCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHh-cCCCcceEEEecccccCCCCCC-CcEEEEcc-h
Confidence 469999999999999998864 57788887 666555543332 232 48999999887777754 99999988 5
Q ss_pred cccccch--HHHHHHHHhhcCCCcEEEEEcCCCCCC--ChhhHH----------------HHHHHHHHHHhcCcEEEEEe
Q 008748 230 IDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAH--DPENRR----------------IWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 230 l~~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~~--~~e~~~----------------~~~~l~~l~~~~gw~vv~~~ 289 (555)
+|+..+. ..+++++.++|+|||++++..+..... ...... ..+++.+++++.||+.+...
T Consensus 242 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~ 321 (335)
T 2r3s_A 242 LHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLH 321 (335)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEE
T ss_pred hccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEE
Confidence 7776443 679999999999999999987543211 111100 13477889999999888654
Q ss_pred e
Q 008748 290 D 290 (555)
Q Consensus 290 ~ 290 (555)
.
T Consensus 322 ~ 322 (335)
T 2r3s_A 322 S 322 (335)
T ss_dssp C
T ss_pred E
Confidence 3
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-11 Score=120.45 Aligned_cols=121 Identities=12% Similarity=0.143 Sum_probs=91.3
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
..+|||+|||+|.++..+++. .|+++|+++.++..+..+. ...+..+.+..+|.... +++++||+|+++. ..+
T Consensus 121 ~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~-~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~-~~~-- 195 (254)
T 2nxc_A 121 GDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANA-KRNGVRPRFLEGSLEAA-LPFGPFDLLVANL-YAE-- 195 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHH-HHTTCCCEEEESCHHHH-GGGCCEEEEEEEC-CHH--
T ss_pred CCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHH-HHcCCcEEEEECChhhc-CcCCCCCEEEECC-cHH--
Confidence 368999999999999888764 6899999999887776444 34444478888776542 4457899999765 233
Q ss_pred cchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 234 QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 234 ~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
....++.++.++|+|||+++++.... ...+++.+.+++.||+++....
T Consensus 196 -~~~~~l~~~~~~LkpgG~lils~~~~--------~~~~~v~~~l~~~Gf~~~~~~~ 243 (254)
T 2nxc_A 196 -LHAALAPRYREALVPGGRALLTGILK--------DRAPLVREAMAGAGFRPLEEAA 243 (254)
T ss_dssp -HHHHHHHHHHHHEEEEEEEEEEEEEG--------GGHHHHHHHHHHTTCEEEEEEE
T ss_pred -HHHHHHHHHHHHcCCCCEEEEEeecc--------CCHHHHHHHHHHCCCEEEEEec
Confidence 23578999999999999999976432 1245778889999999886654
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.20 E-value=7.2e-11 Score=115.12 Aligned_cols=126 Identities=16% Similarity=0.174 Sum_probs=88.1
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC----CCCCCCCccEEEec
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR----LPYPSRSFELAHCS 226 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~----Lp~~d~sFDlVv~s 226 (555)
+..+|||+|||+|.++..|++. .|+++|+++.++..+.. .+... .++.+..+|+.. +++. ++||+|++.
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~-~~~~~-~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~ 150 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLD-ACAER-ENIIPILGDANKPQEYANIV-EKVDVIYED 150 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHH-HTTTC-TTEEEEECCTTCGGGGTTTS-CCEEEEEEC
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHH-HhhcC-CCeEEEECCCCCcccccccC-ccEEEEEEe
Confidence 3468999999999999988853 58889988877755542 23222 578888899887 7776 789999832
Q ss_pred ccccccccch---HHHHHHHHhhcCCCcEEEEEcCC-CCCCChhhHHHH-HHHHHHHHhcCcEEEEEee
Q 008748 227 RCRIDWLQRD---GILLLELDRLLRPGGYFVYSSPE-AYAHDPENRRIW-NAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 227 ~~~l~~~~d~---~~~L~el~RvLkPGG~lvis~P~-~~~~~~e~~~~~-~~l~~l~~~~gw~vv~~~~ 290 (555)
..++ ..++.++.++|||||+++++... ...........+ +++. ++++.||+++....
T Consensus 151 ------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~ 212 (230)
T 1fbn_A 151 ------VAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVD 212 (230)
T ss_dssp ------CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEE
T ss_pred ------cCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEc
Confidence 2334 66899999999999999996321 101111111223 4666 88899998876654
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=5.9e-11 Score=121.21 Aligned_cols=100 Identities=7% Similarity=0.039 Sum_probs=78.0
Q ss_pred CCCCEEEEECCCCcHHHHH-Hhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 154 GNIRNVLDVGCGVASFGAY-LLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~-La~---~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
.++.+|||||||+|.++.. +++ ..|+++|+++.++..++...+.....++.+.++|+..++ +++||+|++...
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a~- 197 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMVAAL- 197 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEECTT-
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEECCC-
Confidence 3457999999999977644 333 479999999998877775544333357899999988776 689999997542
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
.++...+++++.|+|||||+|++....
T Consensus 198 ---~~d~~~~l~el~r~LkPGG~Lvv~~~~ 224 (298)
T 3fpf_A 198 ---AEPKRRVFRNIHRYVDTETRIIYRTYT 224 (298)
T ss_dssp ---CSCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred ---ccCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence 467788999999999999999997643
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=8.3e-11 Score=122.59 Aligned_cols=131 Identities=20% Similarity=0.204 Sum_probs=92.0
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEeccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~ 228 (555)
+..+|||||||+|.++..+++. .++++|+ +.++..+..+.. ..+. ++.+..+|+.. +++. .||+|++.+
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~- 256 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFA-DAGLADRVTVAEGDFFK-PLPV-TADVVLLSF- 256 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH-HTTCTTTEEEEECCTTS-CCSC-CEEEEEEES-
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHH-hcCCCCceEEEeCCCCC-cCCC-CCCEEEEec-
Confidence 4569999999999999998863 5778888 777665554333 3333 58999999754 4443 499999988
Q ss_pred ccccccchH--HHHHHHHhhcCCCcEEEEEcC--CCCCCC-hhhH---H------------HHHHHHHHHHhcCcEEEEE
Q 008748 229 RIDWLQRDG--ILLLELDRLLRPGGYFVYSSP--EAYAHD-PENR---R------------IWNAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 229 ~l~~~~d~~--~~L~el~RvLkPGG~lvis~P--~~~~~~-~e~~---~------------~~~~l~~l~~~~gw~vv~~ 288 (555)
++|+..+.. .+++++.++|+|||++++..+ ...... .... . ..+++.+++++.||+++..
T Consensus 257 vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~ 336 (374)
T 1qzz_A 257 VLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASE 336 (374)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEE
T ss_pred cccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEE
Confidence 577776654 799999999999999999776 311110 0000 0 1236788999999998866
Q ss_pred ee
Q 008748 289 KD 290 (555)
Q Consensus 289 ~~ 290 (555)
..
T Consensus 337 ~~ 338 (374)
T 1qzz_A 337 RT 338 (374)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.8e-11 Score=108.92 Aligned_cols=93 Identities=17% Similarity=0.173 Sum_probs=74.1
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--------CCCCCccE
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--------~~d~sFDl 222 (555)
..+|||+|||+|.++..+++ ..++++|+++ ++.. .++.+..+|...++ +++++||+
T Consensus 23 ~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~ 91 (180)
T 1ej0_A 23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERVGDSKVQV 91 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccCCCCceeE
Confidence 45899999999999988874 3688899888 5421 46788889988776 77789999
Q ss_pred EEecccccccccch-----------HHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 223 AHCSRCRIDWLQRD-----------GILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 223 Vv~s~~~l~~~~d~-----------~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
|++.. .+++..+. ..++.++.++|+|||.++++.+..
T Consensus 92 i~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 92 VMSDM-APNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp EEECC-CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred EEECC-CccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 99865 46655444 578999999999999999987653
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.4e-10 Score=116.28 Aligned_cols=130 Identities=17% Similarity=0.094 Sum_probs=94.7
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
.+|||||||+|.++..++++ .++++|+ +.++..+..+..... ..++.+..+|+.. +++ ++||+|++.. ++|
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~-vl~ 244 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSR-IIG 244 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEES-CGG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEch-hcc
Confidence 69999999999999998853 5889999 888766664443222 3468999999766 565 6799999888 576
Q ss_pred cccchH--HHHHHHHhhcCCCcEEEEEcCCCCCC-ChhhHH---------------HHHHHHHHHHhcCcEEEEEee
Q 008748 232 WLQRDG--ILLLELDRLLRPGGYFVYSSPEAYAH-DPENRR---------------IWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 232 ~~~d~~--~~L~el~RvLkPGG~lvis~P~~~~~-~~e~~~---------------~~~~l~~l~~~~gw~vv~~~~ 290 (555)
+..+.. .+++++.++|+|||++++..+..... ...... ...++.+++++.||+++....
T Consensus 245 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 321 (334)
T 2ip2_A 245 DLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVD 321 (334)
T ss_dssp GCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEEE
Confidence 655554 79999999999999999986432111 010000 124778899999999876543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-11 Score=129.42 Aligned_cols=102 Identities=14% Similarity=0.226 Sum_probs=76.7
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC---CCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg---~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
.+|||+|||+|.++..+++. .|+++|+++.++..+..+...... .++.+...|... ++++++||+|+|+. .
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~np-p 301 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNP-P 301 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEECC-C
T ss_pred CeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEECC-C
Confidence 68999999999999999864 689999999888777655443321 247788888766 56678999999876 4
Q ss_pred cccc---cch--HHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 230 IDWL---QRD--GILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 230 l~~~---~d~--~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
+|+. .+. ..++.++.++|||||.++++.+..
T Consensus 302 fh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~ 337 (375)
T 4dcm_A 302 FHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH 337 (375)
T ss_dssp C-------CCHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred cccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECC
Confidence 5532 111 358999999999999999987654
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.1e-11 Score=113.74 Aligned_cols=98 Identities=13% Similarity=0.020 Sum_probs=77.5
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
+..+|||||||+|.++..|++. .|+++|+++..+..+..+.......++.+..+|....+.++++||+|++.. .+++
T Consensus 77 ~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~-~~~~ 155 (210)
T 3lbf_A 77 PQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTA-APPE 155 (210)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESS-BCSS
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEcc-chhh
Confidence 3468999999999999998863 688999998887666644433333468899999877766678999999887 4666
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 233 LQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
..+ ++.++|||||+++++.+.
T Consensus 156 ~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 156 IPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CCT------HHHHTEEEEEEEEEEECS
T ss_pred hhH------HHHHhcccCcEEEEEEcC
Confidence 543 689999999999998876
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-10 Score=120.17 Aligned_cols=132 Identities=17% Similarity=0.210 Sum_probs=95.4
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC-CCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
+..+|||||||+|.++..++++ .++++|+ +.++..+..+...... .++.+..+|+...++++. |+|++.. +
T Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--D~v~~~~-v 265 (359)
T 1x19_A 190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA--DAVLFCR-I 265 (359)
T ss_dssp TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC--SEEEEES-C
T ss_pred CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC--CEEEEec-h
Confidence 3569999999999999999863 6789999 8887766644433222 248999999888777643 9999988 5
Q ss_pred cccccc--hHHHHHHHHhhcCCCcEEEEEcCCCCCC-Chhh------------H------HHHHHHHHHHHhcCcEEEEE
Q 008748 230 IDWLQR--DGILLLELDRLLRPGGYFVYSSPEAYAH-DPEN------------R------RIWNAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 230 l~~~~d--~~~~L~el~RvLkPGG~lvis~P~~~~~-~~e~------------~------~~~~~l~~l~~~~gw~vv~~ 288 (555)
+|+.++ ...+++++.++|||||++++........ .+.. . ...+++.+++++.||+++..
T Consensus 266 lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~ 345 (359)
T 1x19_A 266 LYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTM 345 (359)
T ss_dssp GGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEE
T ss_pred hccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEE
Confidence 776665 5779999999999999998876321100 0000 0 12236778899999998866
Q ss_pred ee
Q 008748 289 KD 290 (555)
Q Consensus 289 ~~ 290 (555)
..
T Consensus 346 ~~ 347 (359)
T 1x19_A 346 VR 347 (359)
T ss_dssp EE
T ss_pred Ee
Confidence 54
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-10 Score=119.74 Aligned_cols=130 Identities=10% Similarity=0.135 Sum_probs=93.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCC-CCCCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLP-YPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp-~~d~sFDlVv~s~~ 228 (555)
..+|||||||+|.++..++++ .++++|+ +..+..+.... .+.+. ++.+..+|+...+ +..+.||+|++.+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~- 256 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTI-HAHDLGGRVEFFEKNLLDARNFEGGAADVVMLND- 256 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHH-HHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEES-
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHH-HhcCCCCceEEEeCCcccCcccCCCCccEEEEec-
Confidence 579999999999999999863 5778888 66665555333 33332 5889999987765 1335699999988
Q ss_pred ccccccch--HHHHHHHHhhcCCCcEEEEEcCCCCCC--ChhhH----------------HHHHHHHHHHHhcCcEEEEE
Q 008748 229 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAH--DPENR----------------RIWNAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 229 ~l~~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~~--~~e~~----------------~~~~~l~~l~~~~gw~vv~~ 288 (555)
++|+.++. ..+++++.++|+|||++++..+..... .+... ....++.+++++.||+++..
T Consensus 257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 336 (352)
T 3mcz_A 257 CLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGER 336 (352)
T ss_dssp CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeee
Confidence 57777655 679999999999999999976322110 01000 01246889999999999874
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.5e-11 Score=116.31 Aligned_cols=121 Identities=13% Similarity=0.186 Sum_probs=76.9
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEE-eCC-----CCCC---CCCCCccE
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGV-LGT-----KRLP---YPSRSFEL 222 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~-~d~-----~~Lp---~~d~sFDl 222 (555)
...+|||||||+|.++..|++. .|+++|+++.++..+. ++...+.... .++ ..++ +...+||+
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~ 111 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKI-----RSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDV 111 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHH-----HTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECC
T ss_pred CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHH-----HhCccccccccceEEEeCHhHcCcCCCCEEEEEE
Confidence 3468999999999999998864 6889999998886533 3333222111 111 1121 22234554
Q ss_pred EEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCC------------Chhh-HHHHHHHHHHHHhcCcEEEEEe
Q 008748 223 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH------------DPEN-RRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 223 Vv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~------------~~e~-~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
++++. ..++.++.|+|||||.+++...+.+.. ++.. ....+++.+++++.||++....
T Consensus 112 v~~~l---------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~ 182 (232)
T 3opn_A 112 SFISL---------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLT 182 (232)
T ss_dssp SSSCG---------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred EhhhH---------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEE
Confidence 44321 568999999999999999874221111 1111 1244588899999999987544
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-10 Score=108.13 Aligned_cols=113 Identities=17% Similarity=0.126 Sum_probs=83.0
Q ss_pred CCCEEEEECCCCcHHHHHHhcCCCccccCChhhhhHHHHHHHHHcC-CCeEEEEeCCCCCCC---CCCCccEEEeccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPY---PSRSFELAHCSRCRI 230 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~~V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~d~~~Lp~---~d~sFDlVv~s~~~l 230 (555)
++.+|||||||. + ++ |+++.+++.|+++. .++.+.++|+..+++ ++++||+|+|+. ++
T Consensus 12 ~g~~vL~~~~g~-----------v-~v-----D~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~-~l 73 (176)
T 2ld4_A 12 AGQFVAVVWDKS-----------S-PV-----EALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGL-VP 73 (176)
T ss_dssp TTSEEEEEECTT-----------S-CH-----HHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECC-ST
T ss_pred CCCEEEEecCCc-----------e-ee-----eCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECC-hh
Confidence 346899999996 1 24 55566666666653 258899999988887 789999999887 68
Q ss_pred ccc-cchHHHHHHHHhhcCCCcEEEEEcCCCCCCC-hhhHHHHHHHHHHHHhcCcEEE
Q 008748 231 DWL-QRDGILLLELDRLLRPGGYFVYSSPEAYAHD-PENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 231 ~~~-~d~~~~L~el~RvLkPGG~lvis~P~~~~~~-~e~~~~~~~l~~l~~~~gw~vv 286 (555)
||. .+...++++++|+|||||+|++..|...... ........++.+.+++.|| +.
T Consensus 74 ~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~ 130 (176)
T 2ld4_A 74 GSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VE 130 (176)
T ss_dssp TCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EE
T ss_pred hhcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cE
Confidence 888 8889999999999999999999765321100 0000123577888999999 44
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.3e-10 Score=114.74 Aligned_cols=122 Identities=15% Similarity=0.094 Sum_probs=87.9
Q ss_pred CCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccc---
Q 008748 156 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRC--- 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~--- 228 (555)
..+|||+|||+|.++..++. ..++++|+++.++..+..+.......++.+..+|.... +++++||+|+++..
T Consensus 110 ~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~-~~~~~fD~Iv~npPy~~ 188 (276)
T 2b3t_A 110 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-LAGQQFAMIVSNPPYID 188 (276)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-GTTCCEEEEEECCCCBC
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh-cccCCccEEEECCCCCC
Confidence 35899999999999999884 37899999998887776544333223588888887653 44578999998631
Q ss_pred ---------ccccc------------cchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEE
Q 008748 229 ---------RIDWL------------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 229 ---------~l~~~------------~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~ 287 (555)
+++|. .....++.++.++|+|||++++..+.. .-.++.+++++.||..+.
T Consensus 189 ~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------~~~~~~~~l~~~Gf~~v~ 259 (276)
T 2b3t_A 189 EQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ---------QGEAVRQAFILAGYHDVE 259 (276)
T ss_dssp TTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS---------CHHHHHHHHHHTTCTTCC
T ss_pred ccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECch---------HHHHHHHHHHHCCCcEEE
Confidence 11221 233668999999999999999976542 124677788889996543
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=114.58 Aligned_cols=129 Identities=11% Similarity=0.090 Sum_probs=86.8
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC---CCCCCccEEEec
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---YPSRSFELAHCS 226 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp---~~d~sFDlVv~s 226 (555)
++.+|||+|||+|.++..+++. .|+++|+++.++.. .++.++++ .++.+.++|+.... ...++||+|++.
T Consensus 76 ~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~-l~~~a~~r-~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 76 KGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRE-LLLVAQRR-PNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHH-HHHHHHHC-TTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHH-HHHHhhhc-CCeEEEEcccccchhhhccccceEEEEec
Confidence 3469999999999999888853 69999999987643 33455554 57888899976532 124689999976
Q ss_pred ccccccccchHH-HHHHHHhhcCCCcEEEEEcCCCC---CCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 227 RCRIDWLQRDGI-LLLELDRLLRPGGYFVYSSPEAY---AHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 227 ~~~l~~~~d~~~-~L~el~RvLkPGG~lvis~P~~~---~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
. +. ++... ++..+.++|||||+|+++....- ...++ +.+.+....+++.||++++....
T Consensus 154 ~-a~---~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~--e~~~~~~~~L~~~gf~~~~~~~l 216 (232)
T 3id6_C 154 I-AQ---PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPK--EIYKTEVEKLENSNFETIQIINL 216 (232)
T ss_dssp C-CC---TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSS--SSTTHHHHHHHHTTEEEEEEEEC
T ss_pred C-CC---hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHH--HHHHHHHHHHHHCCCEEEEEecc
Confidence 4 22 33333 45566779999999999864321 11111 12345566777889998876543
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-10 Score=114.77 Aligned_cols=119 Identities=10% Similarity=0.118 Sum_probs=90.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCC-eEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~-v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
..+|||+|||+|.++..++.. .++++|+++..+..+..+.......+ +.+..+|+... +++++||+|++..
T Consensus 94 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~v~~~~-- 170 (255)
T 3mb5_A 94 GDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-IEEENVDHVILDL-- 170 (255)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-CCCCSEEEEEECS--
T ss_pred CCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-cCCCCcCEEEECC--
Confidence 468999999999999888753 68899999888776664444332233 88888887654 6678899999642
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcC--cEEEEEe
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC--WKIVSKK 289 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g--w~vv~~~ 289 (555)
+++..++.++.++|+|||.+++..|.. ....++.+.+++.| |..+...
T Consensus 171 ----~~~~~~l~~~~~~L~~gG~l~~~~~~~--------~~~~~~~~~l~~~g~~f~~~~~~ 220 (255)
T 3mb5_A 171 ----PQPERVVEHAAKALKPGGFFVAYTPCS--------NQVMRLHEKLREFKDYFMKPRTI 220 (255)
T ss_dssp ----SCGGGGHHHHHHHEEEEEEEEEEESSH--------HHHHHHHHHHHHTGGGBSCCEEE
T ss_pred ----CCHHHHHHHHHHHcCCCCEEEEEECCH--------HHHHHHHHHHHHcCCCccccEEE
Confidence 355678999999999999999987763 34556777888888 8655433
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-11 Score=128.08 Aligned_cols=100 Identities=17% Similarity=0.241 Sum_probs=78.3
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
.+|||+|||+|.++..+++. .++++|+++.++..+..+. ...+....+...|....+ +++||+|+|+. .+|+
T Consensus 198 ~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~-~~~~~~~~~~~~d~~~~~--~~~fD~Iv~~~-~~~~ 273 (343)
T 2pjd_A 198 GKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATL-AANGVEGEVFASNVFSEV--KGRFDMIISNP-PFHD 273 (343)
T ss_dssp SBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHH-HHTTCCCEEEECSTTTTC--CSCEEEEEECC-CCCS
T ss_pred CeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHhCCCCEEEEccccccc--cCCeeEEEECC-Cccc
Confidence 48999999999999998753 6899999988887666443 344566777788875543 67899999877 4654
Q ss_pred -----ccchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 233 -----LQRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 233 -----~~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
..+...++.++.++|||||.++++.+..
T Consensus 274 g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 306 (343)
T 2pjd_A 274 GMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (343)
T ss_dssp SSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred CccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence 2445779999999999999999987654
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=120.91 Aligned_cols=97 Identities=14% Similarity=0.164 Sum_probs=77.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEeccc--
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRC-- 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~-- 228 (555)
..+|||||||+|.++..+++. .|+++|+++ ++..+. +.+...+ .++.+..+|+..+++++++||+|++...
T Consensus 65 ~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~-~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~ 142 (340)
T 2fyt_A 65 DKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAM-DIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGY 142 (340)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHH-HHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBT
T ss_pred CCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHH-HHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchh
Confidence 468999999999999998864 688999996 665554 3333444 4689999999999988889999997542
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEE
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFV 254 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lv 254 (555)
.+.+..+...++.++.|+|||||.++
T Consensus 143 ~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 143 FLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 24445566779999999999999998
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=120.54 Aligned_cols=128 Identities=12% Similarity=0.016 Sum_probs=87.5
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHH--HcCCCeEEEEeCCCCCCCCCCCccEEEeccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFAL--ERGIPSTLGVLGTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~--~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~ 228 (555)
+..+|||||||+|.++..++++ .++++|++.. +. . +.+. ....++.+..+|+. .+++ +||+|++..
T Consensus 184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~-~~--~-~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~- 255 (348)
T 3lst_A 184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEV-VA--R-HRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKR- 255 (348)
T ss_dssp SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHH-HT--T-CCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEES-
T ss_pred CCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHH-hh--c-ccccccCCCCCeEEEecCCC-CCCC--CCcEEEEeh-
Confidence 3569999999999999999863 4566666221 11 0 0001 11245889999985 3444 799999888
Q ss_pred ccccccch--HHHHHHHHhhcCCCcEEEEEcCCCCCCChh----h--HH----------HHHHHHHHHHhcCcEEEEEee
Q 008748 229 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPE----N--RR----------IWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 229 ~l~~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~~~~e----~--~~----------~~~~l~~l~~~~gw~vv~~~~ 290 (555)
++|+.++. ..+|+++.++|||||+|++........... . .. ..+++.+++++.||+++....
T Consensus 256 vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 335 (348)
T 3lst_A 256 ILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVG 335 (348)
T ss_dssp CGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred hccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence 58777776 579999999999999999976432111000 0 00 124788999999999886654
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=9.3e-11 Score=122.22 Aligned_cols=98 Identities=14% Similarity=0.165 Sum_probs=78.6
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCC--eEEEEeCCCCCCCCCCCccEEEeccc--
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRC-- 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~--v~~~~~d~~~Lp~~d~sFDlVv~s~~-- 228 (555)
..+|||||||+|.++..++++ .|+++|+++ ++..+. +.+...+.. +.+..+|+..+++++++||+|++...
T Consensus 67 ~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~ 144 (349)
T 3q7e_A 67 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAV-KIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 144 (349)
T ss_dssp TCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHH-HHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHH-HHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccc
Confidence 368999999999999999875 689999994 665555 444444443 89999999999999899999998541
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEEE
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFVY 255 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lvi 255 (555)
.+.+......++.++.|+|||||+++.
T Consensus 145 ~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 145 CLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 244556778899999999999999984
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.1e-10 Score=117.72 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=93.0
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEeccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~ 228 (555)
+..+|||||||+|.++..+++. .++++|+ +.++..+..+.. ..+. ++.+..+|+.. +++. .||+|++..
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~- 257 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLK-DEGLSDRVDVVEGDFFE-PLPR-KADAIILSF- 257 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHH-HTTCTTTEEEEECCTTS-CCSS-CEEEEEEES-
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHH-hcCCCCceEEEeCCCCC-CCCC-CccEEEEcc-
Confidence 3469999999999999998863 4667777 766665554333 3333 68999999754 4443 499999888
Q ss_pred ccccccch--HHHHHHHHhhcCCCcEEEEEcCC-CC-CCChhh---HH------------HHHHHHHHHHhcCcEEEEEe
Q 008748 229 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPE-AY-AHDPEN---RR------------IWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 229 ~l~~~~d~--~~~L~el~RvLkPGG~lvis~P~-~~-~~~~e~---~~------------~~~~l~~l~~~~gw~vv~~~ 289 (555)
++|+.++. ..+++++.++|+|||++++..+. .. ...... .. ..+++.+++++.||+++...
T Consensus 258 vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 337 (360)
T 1tw3_A 258 VLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVR 337 (360)
T ss_dssp CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred cccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEE
Confidence 57766665 47999999999999999998765 21 111010 00 12478889999999988765
Q ss_pred ec
Q 008748 290 DQ 291 (555)
Q Consensus 290 ~~ 291 (555)
..
T Consensus 338 ~~ 339 (360)
T 1tw3_A 338 QL 339 (360)
T ss_dssp EE
T ss_pred eC
Confidence 43
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-10 Score=116.13 Aligned_cols=102 Identities=13% Similarity=0.160 Sum_probs=78.7
Q ss_pred CCEEEEECCCC---cHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC-----------CCC
Q 008748 156 IRNVLDVGCGV---ASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----------YPS 217 (555)
Q Consensus 156 ~~~VLDIGCGt---G~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp-----------~~d 217 (555)
..+|||||||+ |.++..+.+ .+|+++|+++.++..++... ....++.+..+|+...+ ++.
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~--~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~ 155 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALL--AKDPNTAVFTADVRDPEYILNHPDVRRMIDF 155 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHH--TTCTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhc--CCCCCeEEEEeeCCCchhhhccchhhccCCC
Confidence 46899999999 987766543 47899999988886665433 22356899999986421 233
Q ss_pred CCccEEEecccccccccc--hHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 218 RSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 218 ~sFDlVv~s~~~l~~~~d--~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
.+||+|++.. ++||+++ ...+|+++.++|+|||+|+++....
T Consensus 156 ~~~d~v~~~~-vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 156 SRPAAIMLVG-MLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp TSCCEEEETT-TGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCCEEEEEec-hhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 4899999777 6998877 6789999999999999999987543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.3e-10 Score=114.16 Aligned_cols=118 Identities=18% Similarity=0.196 Sum_probs=88.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHH-c--CCCeEEEEeCCCCCCCCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALE-R--GIPSTLGVLGTKRLPYPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~-r--g~~v~~~~~d~~~Lp~~d~sFDlVv~s~ 227 (555)
..+|||+|||+|.++..|+.. .++++|+++..+..+..+.... . ..++.+..+|+...++++++||+|++..
T Consensus 100 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~ 179 (280)
T 1i9g_A 100 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDM 179 (280)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEES
T ss_pred CCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEECC
Confidence 458999999999999888752 6889999988887666554443 2 3568899999888888788999999732
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHh-cCcEEEE
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS-MCWKIVS 287 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~-~gw~vv~ 287 (555)
.++..++.++.++|+|||++++..|.. ....++...+++ .+|....
T Consensus 180 ------~~~~~~l~~~~~~L~pgG~l~~~~~~~--------~~~~~~~~~l~~~~~f~~~~ 226 (280)
T 1i9g_A 180 ------LAPWEVLDAVSRLLVAGGVLMVYVATV--------TQLSRIVEALRAKQCWTEPR 226 (280)
T ss_dssp ------SCGGGGHHHHHHHEEEEEEEEEEESSH--------HHHHHHHHHHHHHSSBCCCE
T ss_pred ------cCHHHHHHHHHHhCCCCCEEEEEeCCH--------HHHHHHHHHHHhcCCcCCcE
Confidence 355678999999999999999988763 223344444444 7775443
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-10 Score=110.12 Aligned_cols=116 Identities=13% Similarity=0.007 Sum_probs=84.4
Q ss_pred CCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
..+|||+|||+|.++..++. ..++++|+++.++..+..+.. ..+. ++.+..+|+..++ ++++||+|++.. +
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~--~ 141 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQH-ELKLENIEPVQSRVEEFP-SEPPFDGVISRA--F 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHH-HTTCSSEEEEECCTTTSC-CCSCEEEEECSC--S
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCeEEEecchhhCC-ccCCcCEEEEec--c
Confidence 35899999999999988885 368899999888766664433 3343 4888999987776 457899999653 2
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
.+...++.++.++|+|||++++...... -+++..+++ ||+++...
T Consensus 142 ---~~~~~~l~~~~~~L~~gG~l~~~~~~~~---------~~~~~~~~~--g~~~~~~~ 186 (207)
T 1jsx_A 142 ---ASLNDMVSWCHHLPGEQGRFYALKGQMP---------EDEIALLPE--EYQVESVV 186 (207)
T ss_dssp ---SSHHHHHHHHTTSEEEEEEEEEEESSCC---------HHHHHTSCT--TEEEEEEE
T ss_pred ---CCHHHHHHHHHHhcCCCcEEEEEeCCCc---------hHHHHHHhc--CCceeeee
Confidence 4457899999999999999999754321 123444443 89877543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.11 E-value=5.3e-11 Score=114.01 Aligned_cols=101 Identities=12% Similarity=0.121 Sum_probs=76.5
Q ss_pred CEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC---CCeEEEEeCCCCCC--CCCCC-ccEEEecc
Q 008748 157 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLP--YPSRS-FELAHCSR 227 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg---~~v~~~~~d~~~Lp--~~d~s-FDlVv~s~ 227 (555)
.+|||+|||+|.++..++.+ .|+++|+++.++..+..+.. ..+ .++.+..+|+..+. +++++ ||+|++..
T Consensus 55 ~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 133 (201)
T 2ift_A 55 SECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQ-TLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 133 (201)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHH-HTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred CeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHH-HhCCCccceEEEECCHHHHHHhhccCCCCCEEEECC
Confidence 58999999999999886643 68999999988877765443 344 36889989876543 23678 99999876
Q ss_pred cccccccchHHHHHHH--HhhcCCCcEEEEEcCCC
Q 008748 228 CRIDWLQRDGILLLEL--DRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el--~RvLkPGG~lvis~P~~ 260 (555)
. ++ ..+...++.++ .|+|+|||.++++....
T Consensus 134 ~-~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 134 P-FH-FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp C-SS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred C-CC-CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 3 33 34556788888 67899999999987653
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=9.4e-11 Score=124.45 Aligned_cols=123 Identities=13% Similarity=0.034 Sum_probs=90.1
Q ss_pred CCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc---C-CCccccCChhhhhHHHHHH------H
Q 008748 127 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---H-DIIAMSLAPNDVHENQIQF------A 196 (555)
Q Consensus 127 ~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~-~V~~vdis~~dls~a~i~~------A 196 (555)
.|..........+.+.+.. .+..+|||||||+|.++..++. . .++|+|+++.++..+..+. +
T Consensus 153 vYGEt~~~~i~~il~~l~l--------~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~ 224 (438)
T 3uwp_A 153 VYGETSFDLVAQMIDEIKM--------TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWM 224 (438)
T ss_dssp GGGGTHHHHHHHHHHHHCC--------CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHhcCC--------CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666653 2346899999999999988874 2 4899999987776554332 2
Q ss_pred HHcC---CCeEEEEeCCCCCCCCC--CCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 197 LERG---IPSTLGVLGTKRLPYPS--RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 197 ~~rg---~~v~~~~~d~~~Lp~~d--~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
...+ .++.|.++|+..+++.+ ..||+|+++. .+ |.++....|.++.|+|||||.|+++.+.
T Consensus 225 ~~~Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn-~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f 290 (438)
T 3uwp_A 225 KWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNN-FA-FGPEVDHQLKERFANMKEGGRIVSSKPF 290 (438)
T ss_dssp HHHTBCCCEEEEEECCTTSHHHHHHHHTCSEEEECC-TT-CCHHHHHHHHHHHTTSCTTCEEEESSCS
T ss_pred HHhCCCCCCeEEEECcccCCccccccCCccEEEEcc-cc-cCchHHHHHHHHHHcCCCCcEEEEeecc
Confidence 2223 46899999999988754 4799999765 33 4577788899999999999999987543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.11 E-value=9.5e-11 Score=109.14 Aligned_cols=132 Identities=14% Similarity=0.061 Sum_probs=91.6
Q ss_pred eeeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHH
Q 008748 118 KINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQ 194 (555)
Q Consensus 118 ~~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~ 194 (555)
++.++.+ ..+.+..+.+.+.+.+.+... ....+|||+|||+|.++..++.. .|+++|+++.++..++.+
T Consensus 15 ~~~~~~~-~~~rp~~~~~~~~~~~~l~~~-------~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~ 86 (187)
T 2fhp_A 15 RLKALDG-DNTRPTTDKVKESIFNMIGPY-------FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKEN 86 (187)
T ss_dssp BCCCCCC-CSSCCCCHHHHHHHHHHHCSC-------CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHH
T ss_pred cccCCCC-CCcCcCHHHHHHHHHHHHHhh-------cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHH
Confidence 4444433 245566667777777766421 23468999999999999987753 689999999888776644
Q ss_pred HHHHcC--CCeEEEEeCCCCC----CCCCCCccEEEecccccccccchHHHHHHH--HhhcCCCcEEEEEcCCC
Q 008748 195 FALERG--IPSTLGVLGTKRL----PYPSRSFELAHCSRCRIDWLQRDGILLLEL--DRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 195 ~A~~rg--~~v~~~~~d~~~L----p~~d~sFDlVv~s~~~l~~~~d~~~~L~el--~RvLkPGG~lvis~P~~ 260 (555)
... .+ .++.+..+|+... ++.+++||+|++... ++ .......+..+ .++|+|||.+++..+..
T Consensus 87 ~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~-~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 87 IAI-TKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPP-YA-KQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp HHH-HTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCC-GG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHH-hCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCC-CC-chhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 433 33 3588888886552 223578999997753 22 34456677777 89999999999988664
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-11 Score=116.72 Aligned_cols=137 Identities=12% Similarity=0.002 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEe
Q 008748 133 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVL 208 (555)
Q Consensus 133 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~ 208 (555)
+.+.+.+.+.+.. ..+..+|||+|||+|.++..+++. .++++|+++.++..+..+.. ..+.++.+.++
T Consensus 15 ~~~~~~~~~~l~~-------~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~ 86 (215)
T 4dzr_A 15 EVLVEEAIRFLKR-------MPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAE-RFGAVVDWAAA 86 (215)
T ss_dssp HHHHHHHHHHHTT-------CCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHH
T ss_pred HHHHHHHHHHhhh-------cCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHH-HhCCceEEEEc
Confidence 3445555555532 123468999999999999998864 68899998888766653332 22336677777
Q ss_pred CCCCCCCCC-----CCccEEEecccccccccc--------------------------hHHHHHHHHhhcCCCcE-EEEE
Q 008748 209 GTKRLPYPS-----RSFELAHCSRCRIDWLQR--------------------------DGILLLELDRLLRPGGY-FVYS 256 (555)
Q Consensus 209 d~~~Lp~~d-----~sFDlVv~s~~~l~~~~d--------------------------~~~~L~el~RvLkPGG~-lvis 256 (555)
|+.. ++++ ++||+|+++.. .+...+ ...+++++.++|||||+ +++.
T Consensus 87 d~~~-~~~~~~~~~~~fD~i~~npp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 164 (215)
T 4dzr_A 87 DGIE-WLIERAERGRPWHAIVSNPP-YIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE 164 (215)
T ss_dssp HHHH-HHHHHHHTTCCBSEEEECCC-CCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred chHh-hhhhhhhccCcccEEEECCC-CCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 7655 5554 89999998532 111110 15688999999999999 6665
Q ss_pred cCCCCCCChhhHHHHHHHHHHHH--hcCcEEEEE
Q 008748 257 SPEAYAHDPENRRIWNAMYDLLK--SMCWKIVSK 288 (555)
Q Consensus 257 ~P~~~~~~~e~~~~~~~l~~l~~--~~gw~vv~~ 288 (555)
.+.. ....+.++++ +.||..+..
T Consensus 165 ~~~~---------~~~~~~~~l~~~~~gf~~~~~ 189 (215)
T 4dzr_A 165 VGHN---------QADEVARLFAPWRERGFRVRK 189 (215)
T ss_dssp CTTS---------CHHHHHHHTGGGGGGTEECCE
T ss_pred ECCc---------cHHHHHHHHHHhhcCCceEEE
Confidence 5432 1345677788 888866543
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.10 E-value=6.7e-10 Score=112.07 Aligned_cols=131 Identities=11% Similarity=0.081 Sum_probs=88.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccC-ChhhhhHHHHHHH----HHcC------CCeEEEEeCCCCCC--C----
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSL-APNDVHENQIQFA----LERG------IPSTLGVLGTKRLP--Y---- 215 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdi-s~~dls~a~i~~A----~~rg------~~v~~~~~d~~~Lp--~---- 215 (555)
..+|||||||+|.++..++.. .|+++|+ ++.++..++.+.. ...+ .++.+...+..... +
T Consensus 80 ~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 159 (281)
T 3bzb_A 80 GKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCT 159 (281)
T ss_dssp TCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHH
T ss_pred CCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhc
Confidence 358999999999999888863 6899999 7888876664442 2222 24666655533321 1
Q ss_pred CCCCccEEEecccccccccchHHHHHHHHhhcC---C--CcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcC-cEEEEEe
Q 008748 216 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLR---P--GGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVSKK 289 (555)
Q Consensus 216 ~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLk---P--GG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g-w~vv~~~ 289 (555)
++++||+|+++. ++++.++...++.++.++|+ | ||.++++....... ......++...+++.| |++....
T Consensus 160 ~~~~fD~Ii~~d-vl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~---~~~~~~~~~~~l~~~G~f~v~~~~ 235 (281)
T 3bzb_A 160 GLQRFQVVLLAD-LLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPH---LAERDLAFFRLVNADGALIAEPWL 235 (281)
T ss_dssp SCSSBSEEEEES-CCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC-----------CTHHHHHHHHSTTEEEEEEE
T ss_pred cCCCCCEEEEeC-cccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecc---cchhHHHHHHHHHhcCCEEEEEec
Confidence 357899999887 47777888899999999999 9 99877654331100 0111235666788899 9887654
Q ss_pred e
Q 008748 290 D 290 (555)
Q Consensus 290 ~ 290 (555)
.
T Consensus 236 ~ 236 (281)
T 3bzb_A 236 S 236 (281)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-10 Score=116.21 Aligned_cols=96 Identities=11% Similarity=0.052 Sum_probs=67.9
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCC-----CCCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY-----PSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~-----~d~sFDlVv~s~~ 228 (555)
..+|||||||+|.++..|+++ .|+++|+++.++..++ ++.... +...+...++. .+++||+|+|+.
T Consensus 46 g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar-----~~~~~~-~v~~~~~~~~~~~~~~~~~~fD~Vv~~~- 118 (261)
T 3iv6_A 46 GSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLA-----EALADR-CVTIDLLDITAEIPKELAGHFDFVLNDR- 118 (261)
T ss_dssp TCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHH-----HHTSSS-CCEEEECCTTSCCCGGGTTCCSEEEEES-
T ss_pred cCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHH-----HHHHhc-cceeeeeecccccccccCCCccEEEEhh-
Confidence 468999999999999999875 6778877776664443 332111 22233333332 247899999987
Q ss_pred ccccc--cchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 229 RIDWL--QRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 229 ~l~~~--~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
+++|. ++...+++++.++| |||.++++.+.
T Consensus 119 ~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 119 LINRFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred hhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 46654 34466999999999 99999998765
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.07 E-value=6.4e-11 Score=108.56 Aligned_cols=123 Identities=19% Similarity=0.218 Sum_probs=85.5
Q ss_pred CCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEE
Q 008748 128 FHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTL 205 (555)
Q Consensus 128 f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~ 205 (555)
+........+.+.+.+... + .+..+|||+|||+|.++..+++. .++++|+++.++..+..+... .+.++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~---~---~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~ 92 (171)
T 1ws6_A 20 ARPSPVRLRKALFDYLRLR---Y---PRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRR-TGLGARV 92 (171)
T ss_dssp CCCCCHHHHHHHHHHHHHH---C---TTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHH-HTCCCEE
T ss_pred CCCCHHHHHHHHHHHHHhh---c---cCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHH-cCCceEE
Confidence 4555556666555555320 0 12358999999999999999864 488999998888766644433 3447888
Q ss_pred EEeCCCCC-C-C--CCCCccEEEecccccccccchHHHHHHHH--hhcCCCcEEEEEcCCC
Q 008748 206 GVLGTKRL-P-Y--PSRSFELAHCSRCRIDWLQRDGILLLELD--RLLRPGGYFVYSSPEA 260 (555)
Q Consensus 206 ~~~d~~~L-p-~--~d~sFDlVv~s~~~l~~~~d~~~~L~el~--RvLkPGG~lvis~P~~ 260 (555)
..+|+... + + ..++||+|++.. .++ .+...++..+. ++|+|||.++++.+..
T Consensus 93 ~~~d~~~~~~~~~~~~~~~D~i~~~~-~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 93 VALPVEVFLPEAKAQGERFTVAFMAP-PYA--MDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp ECSCHHHHHHHHHHTTCCEEEEEECC-CTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred EeccHHHHHHhhhccCCceEEEEECC-CCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 88886552 2 1 124799999875 233 45556777777 9999999999988664
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.1e-10 Score=116.02 Aligned_cols=101 Identities=12% Similarity=0.206 Sum_probs=74.1
Q ss_pred CCEEEEECCCCcH----HHHHHhcC--------CCccccCChhhhhHHHHHHH--------------H-----H---cC-
Q 008748 156 IRNVLDVGCGVAS----FGAYLLSH--------DIIAMSLAPNDVHENQIQFA--------------L-----E---RG- 200 (555)
Q Consensus 156 ~~~VLDIGCGtG~----~a~~La~~--------~V~~vdis~~dls~a~i~~A--------------~-----~---rg- 200 (555)
..+|||+|||||. ++..|++. .|+|+|+++.++..|+...- + . .+
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 3589999999997 55555532 57888888877766653210 0 0 00
Q ss_pred --------CCeEEEEeCCCCCCCC-CCCccEEEecccccccccch--HHHHHHHHhhcCCCcEEEEEc
Q 008748 201 --------IPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 201 --------~~v~~~~~d~~~Lp~~-d~sFDlVv~s~~~l~~~~d~--~~~L~el~RvLkPGG~lvis~ 257 (555)
..+.|.+.|+...|++ .+.||+|+|.+ +++|.++. ..++.++.++|+|||+|++..
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crn-vliyf~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRN-VMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECS-SGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEECC-chHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 2478889998776665 57899999988 57777655 679999999999999999844
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.3e-10 Score=117.13 Aligned_cols=129 Identities=12% Similarity=0.150 Sum_probs=90.5
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHH----HcCCCeEEEEeCCCCCCC--CCCCccEEE
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFAL----ERGIPSTLGVLGTKRLPY--PSRSFELAH 224 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~----~rg~~v~~~~~d~~~Lp~--~d~sFDlVv 224 (555)
++.+|||||||+|.++..+++. .|+++|+++..+..+...+.. ....++.+..+|...++. ++++||+|+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi 174 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence 3469999999999999999864 688888888777665543321 113568899999766543 468899999
Q ss_pred ecccccccccch----HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEE
Q 008748 225 CSRCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 225 ~s~~~l~~~~d~----~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~ 288 (555)
+.. ..++.+.. ..+++++.++|||||.+++.....+.. ......+.+.+++.||..+..
T Consensus 175 ~d~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~----~~~~~~~~~~l~~~GF~~v~~ 237 (304)
T 3bwc_A 175 IDT-TDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLD----LELIEKMSRFIRETGFASVQY 237 (304)
T ss_dssp EEC-C---------CCHHHHHHHHHHEEEEEEEEEEECCTTTC----HHHHHHHHHHHHHHTCSEEEE
T ss_pred ECC-CCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccc----hHHHHHHHHHHHhCCCCcEEE
Confidence 754 34433222 578999999999999999987654321 234567778889999976643
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.06 E-value=6.1e-10 Score=111.55 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=89.3
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~ 228 (555)
..+|||+|||+|.++..++.. .++++|+++..+..+..+.. ..+ .++.+..+|+... +++++||+|++..
T Consensus 113 ~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~~~- 189 (277)
T 1o54_A 113 GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLT-KWGLIERVTIKVRDISEG-FDEKDVDALFLDV- 189 (277)
T ss_dssp TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHH-HTTCGGGEEEECCCGGGC-CSCCSEEEEEECC-
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHH-HcCCCCCEEEEECCHHHc-ccCCccCEEEECC-
Confidence 458999999999999888753 58889998887766654333 334 3578888887665 6667899999632
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
+++..++.++.++|+|||.+++..+.. ....++.+.+++.||..+....
T Consensus 190 -----~~~~~~l~~~~~~L~pgG~l~~~~~~~--------~~~~~~~~~l~~~gf~~~~~~~ 238 (277)
T 1o54_A 190 -----PDPWNYIDKCWEALKGGGRFATVCPTT--------NQVQETLKKLQELPFIRIEVWE 238 (277)
T ss_dssp -----SCGGGTHHHHHHHEEEEEEEEEEESSH--------HHHHHHHHHHHHSSEEEEEEEC
T ss_pred -----cCHHHHHHHHHHHcCCCCEEEEEeCCH--------HHHHHHHHHHHHCCCceeEEEE
Confidence 355678999999999999999988752 2345666777889998765543
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-10 Score=111.64 Aligned_cols=132 Identities=11% Similarity=0.104 Sum_probs=88.2
Q ss_pred CCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
+.+|||+|||+|.++..++. ..++++|+++.++.-+..+ +...|....+.+.|.... .+.++||+|++.. ++|
T Consensus 50 ~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~-~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k-~LH 126 (200)
T 3fzg_A 50 VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSI-IGKLKTTIKYRFLNKESD-VYKGTYDVVFLLK-MLP 126 (200)
T ss_dssp CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHH-HHHSCCSSEEEEECCHHH-HTTSEEEEEEEET-CHH
T ss_pred CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH-HHhcCCCccEEEeccccc-CCCCCcChhhHhh-HHH
Confidence 46899999999999999954 2788999999888776644 444566545555665443 3457899999766 799
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcC-CCCCCChhhHH-HHHHHHHHHHhcCcEEEEEee
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSP-EAYAHDPENRR-IWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P-~~~~~~~e~~~-~~~~l~~l~~~~gw~vv~~~~ 290 (555)
++++.+..+.++.+.|+|||+||-... ....+.+.... ....+++.+.+-.|.+.+.+.
T Consensus 127 lL~~~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~~ 187 (200)
T 3fzg_A 127 VLKQQDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKVI 187 (200)
T ss_dssp HHHHTTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEEE
T ss_pred hhhhhHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeeee
Confidence 996666778899999999998885331 11112211111 123455666666665554443
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.7e-10 Score=109.21 Aligned_cols=123 Identities=11% Similarity=-0.027 Sum_probs=83.9
Q ss_pred CCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC-CC
Q 008748 127 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG-IP 202 (555)
Q Consensus 127 ~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg-~~ 202 (555)
.+.+..+...+.+.+.+... .+..+|||+|||+|.++..++.+ .|+++|+++.++..++.+.. ..+ .+
T Consensus 33 ~~rp~~~~~~~~l~~~l~~~-------~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~-~~~~~~ 104 (202)
T 2fpo_A 33 GLRPTTDRVRETLFNWLAPV-------IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLA-TLKAGN 104 (202)
T ss_dssp -----CHHHHHHHHHHHHHH-------HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHH-HTTCCS
T ss_pred CCCCCHHHHHHHHHHHHHhh-------cCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHH-HcCCCc
Confidence 34444555555555555320 02358999999999999986643 68999999988877764443 334 37
Q ss_pred eEEEEeCCCC-CCCCCCCccEEEecccccccccchHHHHHHHHh--hcCCCcEEEEEcCC
Q 008748 203 STLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQRDGILLLELDR--LLRPGGYFVYSSPE 259 (555)
Q Consensus 203 v~~~~~d~~~-Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~R--vLkPGG~lvis~P~ 259 (555)
+.+.++|+.. ++..+++||+|++... ++ ......++.++.+ +|+|||+++++...
T Consensus 105 v~~~~~D~~~~~~~~~~~fD~V~~~~p-~~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 105 ARVVNSNAMSFLAQKGTPHNIVFVDPP-FR-RGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp EEEECSCHHHHHSSCCCCEEEEEECCS-SS-TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred EEEEECCHHHHHhhcCCCCCEEEECCC-CC-CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 8899998765 5666678999997653 33 3455668888865 59999999997754
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.05 E-value=5.3e-10 Score=110.19 Aligned_cols=119 Identities=14% Similarity=0.111 Sum_probs=83.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHH--------cCCCeEEEEeCCCC-CC--CCCCCc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE--------RGIPSTLGVLGTKR-LP--YPSRSF 220 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~--------rg~~v~~~~~d~~~-Lp--~~d~sF 220 (555)
..+|||||||+|.++..++.. .++++|+++.++..+..+.... ...++.+..+|+.. ++ +++++|
T Consensus 50 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~ 129 (246)
T 2vdv_E 50 KVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQL 129 (246)
T ss_dssp CEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCE
T ss_pred CCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccccc
Confidence 358999999999999998863 5899999998887666444332 22468899999775 66 778899
Q ss_pred cEEEecccccccccc--------hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCc
Q 008748 221 ELAHCSRCRIDWLQR--------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 283 (555)
Q Consensus 221 DlVv~s~~~l~~~~d--------~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw 283 (555)
|.|+..+. -.|... ...++.++.++|+|||.|++.+... ...+.+.+.+...++
T Consensus 130 d~v~~~~p-~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~--------~~~~~~~~~~~~~~~ 191 (246)
T 2vdv_E 130 SKMFFCFP-DPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVK--------DLHEWMVKHLEEHPL 191 (246)
T ss_dssp EEEEEESC-CCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCH--------HHHHHHHHHHHHSTT
T ss_pred CEEEEECC-CcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccH--------HHHHHHHHHHHhCcC
Confidence 99985442 122110 0479999999999999999965331 233445555666654
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1e-09 Score=106.21 Aligned_cols=129 Identities=12% Similarity=0.158 Sum_probs=84.9
Q ss_pred CCCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC---CCCCCccEEEec
Q 008748 155 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---YPSRSFELAHCS 226 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp---~~d~sFDlVv~s 226 (555)
+..+|||+|||+|.++..|++ ..|+++|+++.++..+. +.++.. .++.+..+|+.... ...++||+|++.
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~-~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-PIVEER-RNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHSSC-TTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHH-HHHhcc-CCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 346899999999999998874 36889999888775554 333333 57889999976631 123589999975
Q ss_pred ccccccccchHHHHHHHHhhcCCCcEEEEEcCCCC-CCChhhHHHH-HHHHHHHHhcCcEEEEEee
Q 008748 227 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY-AHDPENRRIW-NAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 227 ~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~-~~~~e~~~~~-~~l~~l~~~~gw~vv~~~~ 290 (555)
.. .......++.++.++|||||+++++..... .......... +++..+ ++. |+++....
T Consensus 151 ~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~~ 211 (227)
T 1g8a_A 151 VA---QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERLN 211 (227)
T ss_dssp CC---STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEEE
T ss_pred CC---CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEec
Confidence 42 112223459999999999999999743211 1111111223 456666 666 98876544
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.3e-10 Score=118.45 Aligned_cols=99 Identities=15% Similarity=0.188 Sum_probs=77.7
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
+..+|||||||+|.++..++++ .|+++|++ .++..+. +.+...+. .+.+..+|+..++++ ++||+|+|.. .
T Consensus 63 ~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~-~ 138 (376)
T 3r0q_C 63 EGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHAR-ALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEW-M 138 (376)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHH-HHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECC-C
T ss_pred CCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHH-HHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcC-h
Confidence 3468999999999999999874 68999999 7776555 44444444 389999999998887 8899999854 2
Q ss_pred cccc---cchHHHHHHHHhhcCCCcEEEEEc
Q 008748 230 IDWL---QRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 230 l~~~---~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
.++. .....++.++.++|||||.+++..
T Consensus 139 ~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 139 GYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp BTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred hhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 3333 456779999999999999998644
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.7e-10 Score=110.27 Aligned_cols=95 Identities=11% Similarity=0.083 Sum_probs=72.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
..+|||||||+|.++..+++. .++++|+++.++..+..+. ...+ ++.+..+|.......+++||+|++.. .+++.
T Consensus 71 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~-~v~~~~~d~~~~~~~~~~fD~v~~~~-~~~~~ 147 (231)
T 1vbf_A 71 GQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLL-SYYN-NIKLILGDGTLGYEEEKPYDRVVVWA-TAPTL 147 (231)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHH-TTCS-SEEEEESCGGGCCGGGCCEEEEEESS-BBSSC
T ss_pred CCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHH-hhcC-CeEEEECCcccccccCCCccEEEECC-cHHHH
Confidence 458999999999999999863 6888888877765554322 2223 78888898766333457899999887 46664
Q ss_pred cchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 234 QRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 234 ~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
. .++.++|+|||+++++.+.
T Consensus 148 ~------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 148 L------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp C------HHHHHTEEEEEEEEEEECS
T ss_pred H------HHHHHHcCCCcEEEEEEcC
Confidence 3 4789999999999998765
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-09 Score=113.42 Aligned_cols=121 Identities=15% Similarity=0.042 Sum_probs=89.3
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
..+|||+|||+|.++..++. ..++|+|+++.++..+..+. ...+. .+.+.++|+..++.+.+.||+|+++...
T Consensus 204 ~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~-~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~npPy 282 (354)
T 3tma_A 204 GMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAA-LASGLSWIRFLRADARHLPRFFPEVDRILANPPH 282 (354)
T ss_dssp TCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHH-HHTTCTTCEEEECCGGGGGGTCCCCSEEEECCCS
T ss_pred CCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHH-HHcCCCceEEEeCChhhCccccCCCCEEEECCCC
Confidence 45899999999999888775 47999999999887776544 34444 6899999999988777789999985321
Q ss_pred c-------ccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 230 I-------DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 230 l-------~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
- +.......++.++.++|+|||.+++.++.. ..+..+.+ .||+.....
T Consensus 283 g~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~-----------~~~~~~~~-~g~~~~~~~ 337 (354)
T 3tma_A 283 GLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP-----------ALLKRALP-PGFALRHAR 337 (354)
T ss_dssp CC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH-----------HHHHHHCC-TTEEEEEEE
T ss_pred cCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH-----------HHHHHHhh-cCcEEEEEE
Confidence 1 111112568999999999999999988752 12334445 888776543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-09 Score=105.28 Aligned_cols=117 Identities=14% Similarity=0.121 Sum_probs=86.0
Q ss_pred CCEEEEECCCCcHHHHHHhc--CCCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~--~~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|||+|||+|.++..+++ ..++++|+++..+..+..+.+ ..+ .++.+...|.....+++++||+|++..
T Consensus 92 ~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~---- 166 (248)
T 2yvl_A 92 EKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLK-KFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDV---- 166 (248)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHH-HTTCCTTEEEECSCTTTSCCCTTCBSEEEECS----
T ss_pred CCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHH-HcCCCCcEEEEEcChhhcccCCCcccEEEECC----
Confidence 45899999999999998886 478889998887766654433 334 467888888776543567899999642
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEE
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~ 288 (555)
+++..++.++.++|+|||.+++..|.. ....++...+++. |..+..
T Consensus 167 --~~~~~~l~~~~~~L~~gG~l~~~~~~~--------~~~~~~~~~l~~~-f~~~~~ 212 (248)
T 2yvl_A 167 --REPWHYLEKVHKSLMEGAPVGFLLPTA--------NQVIKLLESIENY-FGNLEV 212 (248)
T ss_dssp --SCGGGGHHHHHHHBCTTCEEEEEESSH--------HHHHHHHHHSTTT-EEEEEE
T ss_pred --cCHHHHHHHHHHHcCCCCEEEEEeCCH--------HHHHHHHHHHHhh-CCcceE
Confidence 355678999999999999999988763 2344555666665 765543
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=5.8e-10 Score=114.37 Aligned_cols=96 Identities=10% Similarity=0.052 Sum_probs=75.1
Q ss_pred CCEEEEECCCCcHHHHHHhcC--C---CccccCChhhhhHHHHHHHHHcC-CCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--D---IIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~---V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
..+|||||||+|.++..+++. . |+++|+++.++..+..+.. ..+ .++.+..+|....+.++++||+|++.. .
T Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~-~ 153 (317)
T 1dl5_A 76 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVE-RLGIENVIFVCGDGYYGVPEFSPYDVIFVTV-G 153 (317)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH-HTTCCSEEEEESCGGGCCGGGCCEEEEEECS-B
T ss_pred cCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCeEEEECChhhccccCCCeEEEEEcC-C
Confidence 468999999999999998863 3 8999999888866664433 334 358889999877655567899999887 4
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
++++. .++.++|||||.++++...
T Consensus 154 ~~~~~------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 154 VDEVP------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp BSCCC------HHHHHHEEEEEEEEEEBCB
T ss_pred HHHHH------HHHHHhcCCCcEEEEEECC
Confidence 66654 5788999999999998654
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.02 E-value=8.5e-10 Score=105.59 Aligned_cols=97 Identities=13% Similarity=0.050 Sum_probs=73.0
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
..+|||||||+|.++..+++ ..++++|+++..+..+..+.......++.+..+|.......+++||+|++.. .+
T Consensus 78 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~-~~ 156 (215)
T 2yxe_A 78 GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTA-AG 156 (215)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESS-BB
T ss_pred CCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECC-ch
Confidence 46899999999999988875 3688999988887666644433323457888888643322357899999887 46
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
++.. .++.++|||||.++++.+.
T Consensus 157 ~~~~------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 157 PKIP------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp SSCC------HHHHHTEEEEEEEEEEESS
T ss_pred HHHH------HHHHHHcCCCcEEEEEECC
Confidence 6543 5889999999999998865
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-10 Score=107.49 Aligned_cols=120 Identities=17% Similarity=0.065 Sum_probs=80.5
Q ss_pred cHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEE
Q 008748 131 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTL 205 (555)
Q Consensus 131 ~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~--~v~~ 205 (555)
..+...+.+.+.+... .+..+|||+|||+|.++..+++. .++++|+++.++..++.+. ...+. ++.+
T Consensus 14 ~~~~~~~~~~~~l~~~-------~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~ 85 (177)
T 2esr_A 14 TSDKVRGAIFNMIGPY-------FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNI-IMTKAENRFTL 85 (177)
T ss_dssp ----CHHHHHHHHCSC-------CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-HTTTCGGGEEE
T ss_pred CHHHHHHHHHHHHHhh-------cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHH-HHcCCCCceEE
Confidence 3344445555555411 23468999999999999988864 6889999888876665433 33343 4788
Q ss_pred EEeCCCC-CCCCCCCccEEEecccccccccchHHHHHHHH--hhcCCCcEEEEEcCCC
Q 008748 206 GVLGTKR-LPYPSRSFELAHCSRCRIDWLQRDGILLLELD--RLLRPGGYFVYSSPEA 260 (555)
Q Consensus 206 ~~~d~~~-Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~--RvLkPGG~lvis~P~~ 260 (555)
..+|+.. ++..+++||+|++.. .++ ......++..+. ++|+|||.+++..+..
T Consensus 86 ~~~d~~~~~~~~~~~fD~i~~~~-~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 86 LKMEAERAIDCLTGRFDLVFLDP-PYA-KETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp ECSCHHHHHHHBCSCEEEEEECC-SSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred EECcHHHhHHhhcCCCCEEEECC-CCC-cchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 8888655 344446799999764 232 233455777776 9999999999987654
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=114.67 Aligned_cols=126 Identities=12% Similarity=0.019 Sum_probs=88.1
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
+..+|||||||+|.++..++++ .++++|+ +.++ +.+++ ..++.+..+|+.. +++++ |+|++.. ++
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-----~~a~~-~~~v~~~~~d~~~-~~p~~--D~v~~~~-vl 271 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVI-----QDAPA-FSGVEHLGGDMFD-GVPKG--DAIFIKW-IC 271 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-----TTCCC-CTTEEEEECCTTT-CCCCC--SEEEEES-CG
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHH-----Hhhhh-cCCCEEEecCCCC-CCCCC--CEEEEec-hh
Confidence 4579999999999999999863 4556666 4333 33332 3578999999876 67754 9999888 57
Q ss_pred ccccch--HHHHHHHHhhcCCCcEEEEEcCCCCCC---Chh-------hHH-----------HHHHHHHHHHhcCcEEEE
Q 008748 231 DWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAH---DPE-------NRR-----------IWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 231 ~~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~~---~~e-------~~~-----------~~~~l~~l~~~~gw~vv~ 287 (555)
|+..+. ..+|++++++|||||++++........ ... +.. .-+++.+++++.||+.+.
T Consensus 272 h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~ 351 (368)
T 3reo_A 272 HDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFK 351 (368)
T ss_dssp GGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEE
T ss_pred hcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeE
Confidence 766554 468999999999999999976432111 100 000 023688999999999887
Q ss_pred Eeec
Q 008748 288 KKDQ 291 (555)
Q Consensus 288 ~~~~ 291 (555)
....
T Consensus 352 ~~~~ 355 (368)
T 3reo_A 352 VASC 355 (368)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6543
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-11 Score=120.15 Aligned_cols=98 Identities=14% Similarity=0.145 Sum_probs=78.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|||+|||+|.++..+++. .|+++|+++.++..+..+. ...+. ++.+.++|+..++ ++++||+|++.. .++
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~-~~~ 155 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNA-EVYGIADKIEFICGDFLLLA-SFLKADVVFLSP-PWG 155 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-HHTTCGGGEEEEESCHHHHG-GGCCCSEEEECC-CCS
T ss_pred CCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHH-HHcCCCcCeEEEECChHHhc-ccCCCCEEEECC-CcC
Confidence 358999999999999999875 6889999988887666443 34453 6899999987776 557999999876 577
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEE
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis 256 (555)
+..+....+.++.++|+|||.+++.
T Consensus 156 ~~~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 156 GPDYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp SGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred CcchhhhHHHHHHhhcCCcceeHHH
Confidence 7777666788999999999997763
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.01 E-value=9.7e-10 Score=103.93 Aligned_cols=92 Identities=12% Similarity=0.144 Sum_probs=69.6
Q ss_pred CCEEEEECCCCcHHHHHHhcC------CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC---------------
Q 008748 156 IRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------------- 214 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~------~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--------------- 214 (555)
..+|||+|||+|.++..++++ .|+++|+++.. ...++.+.++|+..++
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~ 91 (201)
T 2plw_A 23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNN 91 (201)
T ss_dssp TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC-----------
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhccccccccccc
Confidence 358999999999999988752 58899988732 1245788889987776
Q ss_pred ----------CCCCCccEEEecccccccc----cch-------HHHHHHHHhhcCCCcEEEEEcCC
Q 008748 215 ----------YPSRSFELAHCSRCRIDWL----QRD-------GILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 215 ----------~~d~sFDlVv~s~~~l~~~----~d~-------~~~L~el~RvLkPGG~lvis~P~ 259 (555)
+++++||+|+|.. .+++. .+. ..++.++.++|||||.|++....
T Consensus 92 ~~~~~~~~~~~~~~~fD~v~~~~-~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 92 NSVDYKLKEILQDKKIDIILSDA-AVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECC-CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhhHHHHHhhcCCCcccEEEeCC-CcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 5667999999876 35543 222 23789999999999999986643
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.01 E-value=6.7e-10 Score=114.71 Aligned_cols=98 Identities=18% Similarity=0.258 Sum_probs=76.1
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEeccc--
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC-- 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~-- 228 (555)
..+|||||||+|.++..+++. .|+++|+++ ++..+. +.+...+. .+.+..+|+..+++++++||+|+|...
T Consensus 39 ~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~-~~~~a~-~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAK-ELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHH-HHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CCEEEEecCccHHHHHHHHHCCCCEEEEEChHH-HHHHHH-HHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchh
Confidence 358999999999999998864 688999984 555444 33444443 588999999999888889999998631
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEEE
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFVY 255 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lvi 255 (555)
.+.+......++.++.++|||||.++.
T Consensus 117 ~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 117 FLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 233445567899999999999999984
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.3e-09 Score=104.91 Aligned_cols=99 Identities=13% Similarity=0.134 Sum_probs=74.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCC-CCCC--CCCccEEEe
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LPYP--SRSFELAHC 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~-Lp~~--d~sFDlVv~ 225 (555)
+.+|||||||+|..+..|++. .|+++|+++..+..++.++. +.+. ++.+.++|+.. ++.. .++||+|++
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~ 142 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQ-LAGVDQRVTLREGPALQSLESLGECPAFDLIFI 142 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHH-HTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence 368999999999999999864 68899999888876664443 3333 58899998654 3332 348999997
Q ss_pred cccccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 226 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 226 s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
.. ...+...++.++.++|||||++++....
T Consensus 143 d~----~~~~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 143 DA----DKPNNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp CS----CGGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred CC----chHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 54 2344467899999999999999986643
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=9e-10 Score=114.32 Aligned_cols=124 Identities=10% Similarity=0.017 Sum_probs=88.9
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|||||||+|.++..++++ .++++|+ +.++ +.|++. .++.+..+|+.. ++++ ||+|++++ ++|
T Consensus 189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-----~~a~~~-~~v~~~~~d~~~-~~p~--~D~v~~~~-~lh 257 (352)
T 1fp2_A 189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVV-----ENLSGS-NNLTYVGGDMFT-SIPN--ADAVLLKY-ILH 257 (352)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-----TTCCCB-TTEEEEECCTTT-CCCC--CSEEEEES-CGG
T ss_pred CceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHH-----hhcccC-CCcEEEeccccC-CCCC--ccEEEeeh-hhc
Confidence 469999999999999999853 4667776 5444 333332 358899999755 5553 99999888 588
Q ss_pred cccchH--HHHHHHHhhcCC---CcEEEEEcCCCCCCCh-----hhH---H-----------HHHHHHHHHHhcCcEEEE
Q 008748 232 WLQRDG--ILLLELDRLLRP---GGYFVYSSPEAYAHDP-----ENR---R-----------IWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 232 ~~~d~~--~~L~el~RvLkP---GG~lvis~P~~~~~~~-----e~~---~-----------~~~~l~~l~~~~gw~vv~ 287 (555)
+..+.. .+|+++.++||| ||++++..+....... ... . .-+++.+++++.||+++.
T Consensus 258 ~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 337 (352)
T 1fp2_A 258 NWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYK 337 (352)
T ss_dssp GSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEE
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeE
Confidence 777776 899999999999 9999997643211110 100 0 124778899999998876
Q ss_pred Eee
Q 008748 288 KKD 290 (555)
Q Consensus 288 ~~~ 290 (555)
...
T Consensus 338 ~~~ 340 (352)
T 1fp2_A 338 ISP 340 (352)
T ss_dssp EEE
T ss_pred EEe
Confidence 544
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-09 Score=117.54 Aligned_cols=103 Identities=7% Similarity=-0.042 Sum_probs=75.1
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHH--HHHHH----HHcC---CCeEEEEeCCCCC--CC--CC
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHEN--QIQFA----LERG---IPSTLGVLGTKRL--PY--PS 217 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a--~i~~A----~~rg---~~v~~~~~d~~~L--p~--~d 217 (555)
...+|||||||+|.++..++.. .|+|+|+++.++..+ +++.+ ...+ .++.+..+|.... ++ ..
T Consensus 242 ~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~~ 321 (433)
T 1u2z_A 242 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELI 321 (433)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHG
T ss_pred CCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccccccccc
Confidence 3468999999999999998862 589999999877665 32222 2334 4677877754322 22 24
Q ss_pred CCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 218 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 218 ~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
++||+|+++.. + +.++...+|.++.++|||||.+++..+.
T Consensus 322 ~~FDvIvvn~~-l-~~~d~~~~L~el~r~LKpGG~lVi~d~f 361 (433)
T 1u2z_A 322 PQCDVILVNNF-L-FDEDLNKKVEKILQTAKVGCKIISLKSL 361 (433)
T ss_dssp GGCSEEEECCT-T-CCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred CCCCEEEEeCc-c-ccccHHHHHHHHHHhCCCCeEEEEeecc
Confidence 68999998653 3 4567777899999999999999997543
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=4.7e-10 Score=117.47 Aligned_cols=125 Identities=15% Similarity=0.058 Sum_probs=88.1
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
+..+|||||||+|.++..++++ .++++|+ +.++ +.|++ ..++.+..+|+.. ++++ ||+|+++. ++
T Consensus 209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~-----~~a~~-~~~v~~~~~d~~~-~~~~--~D~v~~~~-~l 277 (372)
T 1fp1_D 209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVI-----ENAPP-LSGIEHVGGDMFA-SVPQ--GDAMILKA-VC 277 (372)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-----TTCCC-CTTEEEEECCTTT-CCCC--EEEEEEES-SG
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHH-----Hhhhh-cCCCEEEeCCccc-CCCC--CCEEEEec-cc
Confidence 3469999999999999999864 2444465 4433 33333 2468899999876 6664 99999888 68
Q ss_pred ccccchH--HHHHHHHhhcCCCcEEEEEc---CCCCCCC-----hhhHH------------HHHHHHHHHHhcCcEEEEE
Q 008748 231 DWLQRDG--ILLLELDRLLRPGGYFVYSS---PEAYAHD-----PENRR------------IWNAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 231 ~~~~d~~--~~L~el~RvLkPGG~lvis~---P~~~~~~-----~e~~~------------~~~~l~~l~~~~gw~vv~~ 288 (555)
|+.++.. .+|+++.++|||||++++.. |...... ..... ..+++.+++++.||+++..
T Consensus 278 h~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 357 (372)
T 1fp1_D 278 HNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQV 357 (372)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEE
Confidence 8887776 89999999999999999874 2211110 00001 1237788999999988765
Q ss_pred ee
Q 008748 289 KD 290 (555)
Q Consensus 289 ~~ 290 (555)
..
T Consensus 358 ~~ 359 (372)
T 1fp1_D 358 AC 359 (372)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-09 Score=106.57 Aligned_cols=97 Identities=14% Similarity=0.153 Sum_probs=72.8
Q ss_pred CCEEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCC-CccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSR-SFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~-sFDlVv~s~~~l~ 231 (555)
..+|||||||+|.++..+++ ..|+++|+++..+..+..+.......++.+..+|. ..+++++ .||+|++.. .++
T Consensus 92 ~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Ii~~~-~~~ 169 (235)
T 1jg1_A 92 GMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPKAPYDVIIVTA-GAP 169 (235)
T ss_dssp TCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGGCCEEEEEECS-BBS
T ss_pred CCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCCCCccEEEECC-cHH
Confidence 35899999999999999886 47899999988776666444332223578888886 4455444 499999877 455
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
+.. .++.++|+|||.++++.+..
T Consensus 170 ~~~------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 170 KIP------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp SCC------HHHHHTEEEEEEEEEEECSS
T ss_pred HHH------HHHHHhcCCCcEEEEEEecC
Confidence 543 47899999999999988764
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.97 E-value=6.4e-10 Score=107.59 Aligned_cols=101 Identities=17% Similarity=0.213 Sum_probs=74.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCC-CCCC-----CCCccE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LPYP-----SRSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~-Lp~~-----d~sFDl 222 (555)
+.+|||||||+|.++..|++. .|+++|+++.++..+..++.. .+. ++.+.++|+.. ++.. .++||+
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNF-AGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHH-HTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHH-cCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 368999999999999999863 688999999888766644433 343 48899988633 3322 268999
Q ss_pred EEecccccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 223 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 223 Vv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
|++.. ..++..+...++.++ ++|||||++++....
T Consensus 138 V~~d~-~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 138 VFLDH-WKDRYLPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp EEECS-CGGGHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEEcC-CcccchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 99776 344444445577777 999999999986543
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-09 Score=113.54 Aligned_cols=99 Identities=15% Similarity=0.189 Sum_probs=74.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
..+|||||||+|.++..+++. .|+++|+++ ++..+. +.+...+ .++.+..+|+..++++ ++||+|++.....
T Consensus 51 ~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~-~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~ 127 (348)
T 2y1w_A 51 DKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAE-VLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGY 127 (348)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHH-HHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCCBT
T ss_pred cCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHH-HHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCchh
Confidence 468999999999999998864 689999986 554443 3444444 4689999999888776 6799999876433
Q ss_pred ccc-cchHHHHHHHHhhcCCCcEEEEEc
Q 008748 231 DWL-QRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 231 ~~~-~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
++. +.....+.++.++|||||.+++..
T Consensus 128 ~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 128 MLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp TBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred cCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 332 233567889999999999999654
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-09 Score=111.70 Aligned_cols=126 Identities=18% Similarity=0.137 Sum_probs=87.7
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecc---
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR--- 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~--- 227 (555)
..+|||+|||+|..+..|++ ..|+++|+++..+..+..+..+....++.+..+|+..++..+++||+|++..
T Consensus 119 g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~Pcs 198 (315)
T 1ixk_A 119 GEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCT 198 (315)
T ss_dssp TCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCTT
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCCCC
Confidence 46899999999999999885 2589999999888766644433322368888899887765557899999731
Q ss_pred --cccccccc----------------hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 228 --CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 228 --~~l~~~~d----------------~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
..++..++ ...+|.++.++|||||++++++-.... .+.. ..+..++++.+|+++
T Consensus 199 g~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~--~Ene---~~v~~~l~~~~~~~~ 270 (315)
T 1ixk_A 199 GSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP--EENE---FVIQWALDNFDVELL 270 (315)
T ss_dssp STTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG--GGTH---HHHHHHHHHSSEEEE
T ss_pred CcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCh--HHhH---HHHHHHHhcCCCEEe
Confidence 11221111 146899999999999999998754321 2221 245667778888766
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.96 E-value=2.5e-09 Score=110.97 Aligned_cols=129 Identities=6% Similarity=-0.025 Sum_probs=88.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCC----CCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPY----PSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~----~d~sFDlVv~s~ 227 (555)
..+|||+|||+|.++..++.. .|+++|+++.++..+..+.....-. ++.+.++|+..+.. ..++||+|++.-
T Consensus 154 ~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dP 233 (332)
T 2igt_A 154 PLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 233 (332)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred CCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECC
Confidence 358999999999999999864 6889999998887777555443322 37888888755421 146899999842
Q ss_pred c---------ccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 228 C---------RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 228 ~---------~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
. +.++..+...++.++.++|+|||+|+++......... ......+.+.+++.|+.+.
T Consensus 234 P~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~--~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 234 PKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASF--YSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp CSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCH--HHHHHHHHHHTTTSCSEEE
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCH--HHHHHHHHHHHHHcCCeEE
Confidence 1 1223445567999999999999998876654322221 1223344556678888765
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2e-09 Score=112.69 Aligned_cols=126 Identities=17% Similarity=0.090 Sum_probs=88.2
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
...+|||||||+|.++..++++ .++++|+ +.. ++.|++ ..++.+..+|+.. |++.+ |+|+++. ++
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~-----~~~a~~-~~~v~~~~~D~~~-~~p~~--D~v~~~~-vl 269 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHV-----ISEAPQ-FPGVTHVGGDMFK-EVPSG--DTILMKW-IL 269 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHH-----HTTCCC-CTTEEEEECCTTT-CCCCC--SEEEEES-CG
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHH-----HHhhhh-cCCeEEEeCCcCC-CCCCC--CEEEehH-Hh
Confidence 4579999999999999999863 4566666 333 233332 3578999999877 77754 9999888 57
Q ss_pred ccccch--HHHHHHHHhhcCCCcEEEEEcCCCCCC---Chh-------hHHH-----------HHHHHHHHHhcCcEEEE
Q 008748 231 DWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAH---DPE-------NRRI-----------WNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 231 ~~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~~---~~e-------~~~~-----------~~~l~~l~~~~gw~vv~ 287 (555)
|+..+. ..+|++++++|||||++++........ ... +... -+++.+++++.||+.++
T Consensus 270 h~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~ 349 (364)
T 3p9c_A 270 HDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVK 349 (364)
T ss_dssp GGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEE
T ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEE
Confidence 665443 568999999999999999976432111 100 0000 23678999999999887
Q ss_pred Eeec
Q 008748 288 KKDQ 291 (555)
Q Consensus 288 ~~~~ 291 (555)
....
T Consensus 350 ~~~~ 353 (364)
T 3p9c_A 350 STYI 353 (364)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 6543
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.5e-10 Score=119.69 Aligned_cols=92 Identities=13% Similarity=0.120 Sum_probs=74.6
Q ss_pred CCEEEEECCC------CcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCC------CC
Q 008748 156 IRNVLDVGCG------VASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP------SR 218 (555)
Q Consensus 156 ~~~VLDIGCG------tG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~------d~ 218 (555)
+.+||||||| +|..+..++. ..|+++|+++.+. ....++.+.++|+.++++. ++
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d~ 287 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRYG 287 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhcccC
Confidence 4689999999 6666665553 3789999998863 1346799999999998887 68
Q ss_pred CccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 219 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 219 sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
+||+|+|.. .|+..+...+|+++.|+|||||+|++.+.
T Consensus 288 sFDlVisdg--sH~~~d~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 288 PFDIVIDDG--SHINAHVRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp CEEEEEECS--CCCHHHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred CccEEEECC--cccchhHHHHHHHHHHhcCCCeEEEEEec
Confidence 999999764 46667778899999999999999999753
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=4.6e-09 Score=109.47 Aligned_cols=132 Identities=17% Similarity=0.154 Sum_probs=87.7
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
...+|||||||+|.++..++++ +++..|. +..+..+....+.....++.+..+|+...|.+ .+|+|++.+ ++
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~-vl 254 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILAR-VL 254 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEES-SG
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeee-ec
Confidence 3468999999999999999874 3344444 33332222111111235689999998666655 479999888 57
Q ss_pred ccccch--HHHHHHHHhhcCCCcEEEEEcCCCCC--CChhhHH---------------HHHHHHHHHHhcCcEEEEEee
Q 008748 231 DWLQRD--GILLLELDRLLRPGGYFVYSSPEAYA--HDPENRR---------------IWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 231 ~~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~--~~~e~~~---------------~~~~l~~l~~~~gw~vv~~~~ 290 (555)
|..++. ..+|++++++|+|||.++|...-... ..+.... ...++.+++++.||+.++...
T Consensus 255 h~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~~ 333 (353)
T 4a6d_A 255 HDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFKK 333 (353)
T ss_dssp GGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence 666555 45899999999999999997743211 1111111 124788999999999887654
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.94 E-value=7.7e-10 Score=108.16 Aligned_cols=97 Identities=7% Similarity=0.128 Sum_probs=75.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCC-C-CCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-YPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~L-p-~~d~sFDlVv~s~ 227 (555)
..+|||||||+|.++..|+.. .|+++|+++.++..++.++ ...+. ++.+..+|+... + ..+++||+|++..
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNL-ATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHH-HHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 358999999999999999872 6889999988887666444 33443 689999997553 4 3368899999654
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
. ..+...++.++.++|||||+|++..
T Consensus 151 ~----~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 151 A----KAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp T----SSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred c----HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 2 3445679999999999999998854
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-09 Score=111.99 Aligned_cols=107 Identities=17% Similarity=0.166 Sum_probs=77.0
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHH----cCCCeEEEEeCCCCC--CCCCCCccEEE
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKRL--PYPSRSFELAH 224 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~----rg~~v~~~~~d~~~L--p~~d~sFDlVv 224 (555)
.+.+|||||||+|.++..|++. .|+++|+++.++..++.++... ...++.+.++|+..+ .+++++||+|+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi 199 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 199 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence 3469999999999999999864 6888999888876666444321 135789999986543 23457899999
Q ss_pred ecccc-cccccc--hHHHHHHHHhhcCCCcEEEEEcCCCC
Q 008748 225 CSRCR-IDWLQR--DGILLLELDRLLRPGGYFVYSSPEAY 261 (555)
Q Consensus 225 ~s~~~-l~~~~d--~~~~L~el~RvLkPGG~lvis~P~~~ 261 (555)
+.... .+.... ...+++++.++|+|||.|++.....+
T Consensus 200 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~ 239 (334)
T 1xj5_A 200 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLW 239 (334)
T ss_dssp ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred ECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCcc
Confidence 75321 111111 36799999999999999999755444
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=7.9e-09 Score=108.61 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=88.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
..+|||+|||+|.++..++.. .|+|+|+++.++..+..+. ...+. .+.+.++|+..+++++++||+|+++...
T Consensus 218 ~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~-~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npPy 296 (373)
T 3tm4_A 218 GGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNA-LAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPY 296 (373)
T ss_dssp SCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHH-HHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECCC
T ss_pred CCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH-HHcCCCCceEEEECChhhCCcccCCcCEEEECCCC
Confidence 358999999999999998863 6899999999887776444 44454 6899999999999888899999985321
Q ss_pred c------ccccch-HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 230 I------DWLQRD-GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 230 l------~~~~d~-~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
- +...+. ..++.++.++| ||.+++.++. ...+++.+++.||+......
T Consensus 297 g~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~-----------~~~~~~~~~~~G~~~~~~~~ 351 (373)
T 3tm4_A 297 GLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTE-----------KKAIEEAIAENGFEIIHHRV 351 (373)
T ss_dssp C------CCHHHHHHHHHHHHHHHE--EEEEEEEESC-----------HHHHHHHHHHTTEEEEEEEE
T ss_pred CcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECC-----------HHHHHHHHHHcCCEEEEEEE
Confidence 1 111111 55889999999 5665555543 23566788899998876543
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.6e-09 Score=105.58 Aligned_cols=98 Identities=13% Similarity=0.065 Sum_probs=77.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|||+|||+|.++..++.. .|+++|+++.++..+..+.......++.+..+|+..++. .++||+|++... .
T Consensus 120 ~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p-~- 196 (272)
T 3a27_A 120 NEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYV-H- 196 (272)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCC-S-
T ss_pred CCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCc-c-
Confidence 468999999999999999863 689999999888777654443332467899999877744 578999997653 2
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
+...++.++.++|+|||.++++...
T Consensus 197 ---~~~~~l~~~~~~LkpgG~l~~s~~~ 221 (272)
T 3a27_A 197 ---KTHKFLDKTFEFLKDRGVIHYHETV 221 (272)
T ss_dssp ---SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ---cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 4566899999999999999987644
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-09 Score=105.56 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=74.5
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHc-----CCCeEEEEeCCCCCCCCCCCccEEEe
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHC 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~r-----g~~v~~~~~d~~~Lp~~d~sFDlVv~ 225 (555)
..+|||||||+|.++..|++ ..|+++|+++..+..+..+..... ..++.+..+|....+..+++||+|++
T Consensus 78 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~ 157 (226)
T 1i1n_A 78 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHV 157 (226)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEEE
Confidence 46899999999999988875 268899999888766664443321 23688888988766655678999998
Q ss_pred cccccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 226 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 226 s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
... ++. ++.++.++|||||+++++.+.
T Consensus 158 ~~~-~~~------~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 158 GAA-APV------VPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp CSB-BSS------CCHHHHHTEEEEEEEEEEESC
T ss_pred CCc-hHH------HHHHHHHhcCCCcEEEEEEec
Confidence 763 433 457899999999999998765
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-09 Score=106.62 Aligned_cols=96 Identities=16% Similarity=0.212 Sum_probs=73.1
Q ss_pred CEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC---CeEEEEeCCCCC-C-CCCCCccEEEec
Q 008748 157 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRL-P-YPSRSFELAHCS 226 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~---~v~~~~~d~~~L-p-~~d~sFDlVv~s 226 (555)
.+|||||||+|..+..|+. ..|+++|+++.++..++.++. +.+. ++.+..+|+..+ + +++++||+|++.
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFR-EAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHH-HTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 4899999999999998885 268999999988877764443 3343 488888886443 2 336889999975
Q ss_pred ccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 227 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 227 ~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
.. ..+...++.++.++|||||++++..
T Consensus 137 ~~----~~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 137 VS----PMDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp CC----TTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred Cc----HHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 42 2344568999999999999999854
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-09 Score=108.02 Aligned_cols=102 Identities=15% Similarity=0.063 Sum_probs=71.1
Q ss_pred CCEEEEECCCCcHHHHHHhcC------CCccccCChhhhhHHHHHHHHHc--CC--C-----------------------
Q 008748 156 IRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALER--GI--P----------------------- 202 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~------~V~~vdis~~dls~a~i~~A~~r--g~--~----------------------- 202 (555)
..+|||+|||+|.++..++.. .|+++|+++.++..+..+..... +. .
T Consensus 52 ~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (250)
T 1o9g_A 52 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA 131 (250)
T ss_dssp CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhhh
Confidence 468999999999999888753 68899999888866654332110 11 1
Q ss_pred --eE-------------EEEeCCCCCCC-----CCCCccEEEecccccccc---------cchHHHHHHHHhhcCCCcEE
Q 008748 203 --ST-------------LGVLGTKRLPY-----PSRSFELAHCSRCRIDWL---------QRDGILLLELDRLLRPGGYF 253 (555)
Q Consensus 203 --v~-------------~~~~d~~~Lp~-----~d~sFDlVv~s~~~l~~~---------~d~~~~L~el~RvLkPGG~l 253 (555)
+. +..+|+..... ..++||+|+|+.. +... .....++.++.++|+|||++
T Consensus 132 ~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp-~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 132 RRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLP-YGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECC-GGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCC-eeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 34 88888765321 3458999998753 2222 22347999999999999999
Q ss_pred EEEcC
Q 008748 254 VYSSP 258 (555)
Q Consensus 254 vis~P 258 (555)
+++..
T Consensus 211 ~~~~~ 215 (250)
T 1o9g_A 211 AVTDR 215 (250)
T ss_dssp EEEES
T ss_pred EEeCc
Confidence 99543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.91 E-value=6.7e-10 Score=107.35 Aligned_cols=97 Identities=14% Similarity=0.077 Sum_probs=75.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC---------CCccccCChhhhhHHHHHHHHHc-----CCCeEEEEeCCCCCC----CCC
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---------DIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLP----YPS 217 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---------~V~~vdis~~dls~a~i~~A~~r-----g~~v~~~~~d~~~Lp----~~d 217 (555)
..+|||||||+|.++..+++. .|+++|+++..+..+..+..... ..++.+..+|..... ...
T Consensus 81 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 160 (227)
T 2pbf_A 81 GSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKEL 160 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccC
Confidence 368999999999999888752 68899999888776665444332 346889999987655 556
Q ss_pred CCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 218 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 218 ~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
++||+|++.. .+++ ++.++.++|+|||++++..+.
T Consensus 161 ~~fD~I~~~~-~~~~------~~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 161 GLFDAIHVGA-SASE------LPEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp CCEEEEEECS-BBSS------CCHHHHHHEEEEEEEEEEEEE
T ss_pred CCcCEEEECC-chHH------HHHHHHHhcCCCcEEEEEEcc
Confidence 7899999876 3543 368899999999999998754
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.9e-09 Score=99.20 Aligned_cols=93 Identities=16% Similarity=0.091 Sum_probs=66.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC-------------CCccccCChhhhhHHHHHHHHHcCCCeEEE-EeCCCCCC-------
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-------------DIIAMSLAPNDVHENQIQFALERGIPSTLG-VLGTKRLP------- 214 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-------------~V~~vdis~~dls~a~i~~A~~rg~~v~~~-~~d~~~Lp------- 214 (555)
..+|||+|||+|.++..|++. .|+++|+++.. ....+.+. .+|+...+
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~~~~ 91 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQRILE 91 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHHHHH
Confidence 468999999999999998853 37888888732 11346777 77765543
Q ss_pred -CCCCCccEEEeccc---ccccccch-------HHHHHHHHhhcCCCcEEEEEcCC
Q 008748 215 -YPSRSFELAHCSRC---RIDWLQRD-------GILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 215 -~~d~sFDlVv~s~~---~l~~~~d~-------~~~L~el~RvLkPGG~lvis~P~ 259 (555)
+++++||+|+|..+ ..++..+. ..++.++.++|||||.|++....
T Consensus 92 ~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 92 VLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp HSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 34568999998542 12333333 46899999999999999998654
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.90 E-value=5.6e-09 Score=107.61 Aligned_cols=98 Identities=13% Similarity=0.111 Sum_probs=71.9
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHc-----------CCCeEEEEeCCCCC--CCCC
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALER-----------GIPSTLGVLGTKRL--PYPS 217 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~r-----------g~~v~~~~~d~~~L--p~~d 217 (555)
..+|||+|||+|.++..|+. ..|+++|+++..+..+..+..... ..++.+..+|+..+ ++++
T Consensus 106 g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~~ 185 (336)
T 2b25_A 106 GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKS 185 (336)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-----
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccCC
Confidence 46899999999999988875 358899999988877765544311 24688999998776 5667
Q ss_pred CCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 218 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 218 ~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
++||+|++.. .++..++.++.++|+|||.+++..+.
T Consensus 186 ~~fD~V~~~~------~~~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 186 LTFDAVALDM------LNPHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp --EEEEEECS------SSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred CCeeEEEECC------CCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 7899999753 12334799999999999999998765
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.90 E-value=6.5e-09 Score=102.48 Aligned_cols=119 Identities=13% Similarity=0.053 Sum_probs=90.1
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
.+|||||||+|.++..|+.. .|+++|+++..+..+..+... .+. .+.+..+|......++..||+|+.....-
T Consensus 23 ~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~-~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmGg 101 (230)
T 3lec_A 23 ARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSE-HGLTSKIDVRLANGLSAFEEADNIDTITICGMGG 101 (230)
T ss_dssp EEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHH-TTCTTTEEEEECSGGGGCCGGGCCCEEEEEEECH
T ss_pred CEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEECchhhccccccccCEEEEeCCch
Confidence 58999999999999999874 588999999988777755543 443 58999999766655544799988655211
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
.-...++.+..+.|+++|+|+++.-. ....+.+.+.+.||.++...
T Consensus 102 ---~lI~~IL~~~~~~l~~~~~lIlqp~~----------~~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 102 ---RLIADILNNDIDKLQHVKTLVLQPNN----------REDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp ---HHHHHHHHHTGGGGTTCCEEEEEESS----------CHHHHHHHHHHTTEEEEEEE
T ss_pred ---HHHHHHHHHHHHHhCcCCEEEEECCC----------ChHHHHHHHHHCCCEEEEEE
Confidence 12245788889999999999987532 14577888999999988765
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-09 Score=107.55 Aligned_cols=117 Identities=14% Similarity=0.088 Sum_probs=81.8
Q ss_pred CEEEEECCCCcHHHHHHhc--------CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC---CCCC-CCccEEE
Q 008748 157 RNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL---PYPS-RSFELAH 224 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~--------~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L---p~~d-~sFDlVv 224 (555)
.+|||||||+|..+..|++ ..|+++|+++.++..+. ....++.+.++|...+ ++.+ .+||+|+
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-----~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~ 157 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDMENITLHQGDCSDLTTFEHLREMAHPLIF 157 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGCTTEEEEECCSSCSGGGGGGSSSCSSEEE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-----ccCCceEEEECcchhHHHHHhhccCCCCEEE
Confidence 5899999999999988864 36899999998775443 3346789999998774 5433 4799999
Q ss_pred ecccccccccchHHHHHHHHh-hcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhc--CcEEE
Q 008748 225 CSRCRIDWLQRDGILLLELDR-LLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM--CWKIV 286 (555)
Q Consensus 225 ~s~~~l~~~~d~~~~L~el~R-vLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~--gw~vv 286 (555)
+... | .+...++.++.| +|||||++++.....+ .....-..+.+++++. +|.+.
T Consensus 158 ~d~~--~--~~~~~~l~~~~r~~LkpGG~lv~~d~~~~----~~~~~~~~~~~~l~~~~~~f~~~ 214 (236)
T 2bm8_A 158 IDNA--H--ANTFNIMKWAVDHLLEEGDYFIIEDMIPY----WYRYAPQLFSEYLGAFRDVLSMD 214 (236)
T ss_dssp EESS--C--SSHHHHHHHHHHHTCCTTCEEEECSCHHH----HHHHCHHHHHHHHHTTTTTEEEE
T ss_pred ECCc--h--HhHHHHHHHHHHhhCCCCCEEEEEeCccc----ccccCHHHHHHHHHhCcccEEEc
Confidence 7542 2 356779999998 9999999999653100 0000112566677766 46543
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-09 Score=104.74 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=73.6
Q ss_pred CCEEEEECCCCcHHHHHHhc----------CCCccccCChhhhhHHHHHHHHHc-----CCCeEEEEeCCCCCCCCC-CC
Q 008748 156 IRNVLDVGCGVASFGAYLLS----------HDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPS-RS 219 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~----------~~V~~vdis~~dls~a~i~~A~~r-----g~~v~~~~~d~~~Lp~~d-~s 219 (555)
..+|||||||+|.++..|++ ..|+++|+++..+..+..+..... ..++.+..+|... ++++ ++
T Consensus 85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~ 163 (227)
T 1r18_A 85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPNAP 163 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGGCS
T ss_pred CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcCCC
Confidence 45899999999999988875 268999999988877665444322 3468888888765 4444 78
Q ss_pred ccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 220 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 220 FDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
||+|++.. .+++. +.++.++|||||++++....
T Consensus 164 fD~I~~~~-~~~~~------~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 164 YNAIHVGA-AAPDT------PTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp EEEEEECS-CBSSC------CHHHHHTEEEEEEEEEEESC
T ss_pred ccEEEECC-chHHH------HHHHHHHhcCCCEEEEEEec
Confidence 99999877 45543 47899999999999998754
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=7.7e-10 Score=111.82 Aligned_cols=104 Identities=14% Similarity=0.138 Sum_probs=73.0
Q ss_pred CCCEEEEECCCC--cHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC----CC--CCCcc
Q 008748 155 NIRNVLDVGCGV--ASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP----YP--SRSFE 221 (555)
Q Consensus 155 ~~~~VLDIGCGt--G~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp----~~--d~sFD 221 (555)
..++|||||||+ +..+..+++ .+|+++|.++.++..++.........++.++++|+.+++ .+ .++||
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 457899999997 333444332 479999999988876654332211124789999987752 11 34566
Q ss_pred -----EEEecccccccccch---HHHHHHHHhhcCCCcEEEEEcCC
Q 008748 222 -----LAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 222 -----lVv~s~~~l~~~~d~---~~~L~el~RvLkPGG~lvis~P~ 259 (555)
.|+++ .++||+++. ..+++++.++|+|||+|+++...
T Consensus 158 ~~~p~av~~~-avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~ 202 (277)
T 3giw_A 158 LTRPVALTVI-AIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGT 202 (277)
T ss_dssp TTSCCEEEEE-SCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred cCCcchHHhh-hhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEecc
Confidence 46544 489999884 57999999999999999998643
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.4e-09 Score=102.94 Aligned_cols=119 Identities=12% Similarity=0.039 Sum_probs=89.0
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
.+|||||||+|.++..|+.. .|+++|+++..+..+..+.. ..+. .+.+..+|......++..||+|++....-
T Consensus 23 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~-~~gl~~~I~v~~gD~l~~~~~~~~~D~IviagmGg 101 (244)
T 3gnl_A 23 ERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVR-SSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMGG 101 (244)
T ss_dssp EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHH-HTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEECH
T ss_pred CEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCceEEEEecchhhccCccccccEEEEeCCch
Confidence 58999999999999999874 58899999998877775544 3443 48899999766554444699988654211
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
.-...++.+..+.|+++|+|+++.-. ....+.+.+.+.||.++...
T Consensus 102 ---~lI~~IL~~~~~~L~~~~~lIlq~~~----------~~~~lr~~L~~~Gf~i~~E~ 147 (244)
T 3gnl_A 102 ---TLIRTILEEGAAKLAGVTKLILQPNI----------AAWQLREWSEQNNWLITSEA 147 (244)
T ss_dssp ---HHHHHHHHHTGGGGTTCCEEEEEESS----------CHHHHHHHHHHHTEEEEEEE
T ss_pred ---HHHHHHHHHHHHHhCCCCEEEEEcCC----------ChHHHHHHHHHCCCEEEEEE
Confidence 12245788899999999999987532 13567888999999987655
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.2e-09 Score=103.40 Aligned_cols=99 Identities=11% Similarity=0.102 Sum_probs=73.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCC-C-CC---CCCccEE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-YP---SRSFELA 223 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~L-p-~~---d~sFDlV 223 (555)
+.+|||||||+|.++..+++. .++++|+++..+..++.++. ..+. .+.+..+|+... + ++ .++||+|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIE-RANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHH-HTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 358999999999999999864 58889998888766664443 3333 488898886432 2 11 2579999
Q ss_pred EecccccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 224 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 224 v~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
++... ......++.++.++|+|||++++....
T Consensus 138 ~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 138 FIDAD----KQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp EECSC----GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred EEcCC----cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 97642 234467899999999999999987654
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.88 E-value=3.7e-09 Score=100.81 Aligned_cols=111 Identities=12% Similarity=0.074 Sum_probs=75.6
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCC-----------CCCccE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-----------SRSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~-----------d~sFDl 222 (555)
..+|||+|||+|.++..+++. .|+++|+++.. ...++.+.++|+...+.. .++||+
T Consensus 26 g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~ 94 (191)
T 3dou_A 26 GDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDD 94 (191)
T ss_dssp TCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEE
T ss_pred CCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhcccCCcceE
Confidence 469999999999999999974 68899988742 124688999998776521 148999
Q ss_pred EEeccccccc----ccc-------hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEE
Q 008748 223 AHCSRCRIDW----LQR-------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 223 Vv~s~~~l~~----~~d-------~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~ 287 (555)
|+|... ... ..+ ...++.++.++|||||.|++..-.. . ....+...++. .|..+.
T Consensus 95 Vlsd~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~----~----~~~~~~~~l~~-~F~~v~ 160 (191)
T 3dou_A 95 VVSDAM-AKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG----D----MTNDFIAIWRK-NFSSYK 160 (191)
T ss_dssp EEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS----T----HHHHHHHHHGG-GEEEEE
T ss_pred EecCCC-cCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC----C----CHHHHHHHHHH-hcCEEE
Confidence 997531 111 111 2457899999999999999865322 1 12345555544 465553
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.7e-08 Score=105.98 Aligned_cols=128 Identities=10% Similarity=0.031 Sum_probs=91.3
Q ss_pred CCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCC-CCC-CCCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR-LPY-PSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~-Lp~-~d~sFDlVv~s~~ 228 (555)
+.+|||+| |+|.++..++. ..|+++|+++.++..+..+.. ..+. ++.+..+|+.. +|. .+++||+|+++.
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~-~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~- 249 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAAN-EIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP- 249 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHH-HHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC-
T ss_pred CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCEEEEEChhhhhchhhccCCccEEEECC-
Confidence 46899999 99999988875 268999999988877664443 3344 78999999877 764 456899999764
Q ss_pred ccccccchHHHHHHHHhhcCCCc-EEEEEcCCCCCCChhhHHHHHHHHHHHH-hcCcEEEEEeec
Q 008748 229 RIDWLQRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLK-SMCWKIVSKKDQ 291 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG-~lvis~P~~~~~~~e~~~~~~~l~~l~~-~~gw~vv~~~~~ 291 (555)
.++... ...++.++.++||||| .++++.-. .......|..+.+++. +.|+.+......
T Consensus 250 p~~~~~-~~~~l~~~~~~LkpgG~~~~~~~~~----~~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 309 (373)
T 2qm3_A 250 PETLEA-IRAFVGRGIATLKGPRCAGYFGITR----RESSLDKWREIQKLLLNEFNVVITDIIRN 309 (373)
T ss_dssp CSSHHH-HHHHHHHHHHTBCSTTCEEEEEECT----TTCCHHHHHHHHHHHHHTSCCEEEEEEEE
T ss_pred CCchHH-HHHHHHHHHHHcccCCeEEEEEEec----CcCCHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 333322 4678999999999999 44554432 0112234567777787 889987655443
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-09 Score=104.12 Aligned_cols=96 Identities=10% Similarity=0.118 Sum_probs=72.8
Q ss_pred CEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCC-CCCCCCCccEEEeccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LPYPSRSFELAHCSRC 228 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~-Lp~~d~sFDlVv~s~~ 228 (555)
.+|||||||+|..+..|+.. .|+++|+++.++..+..++.. .+. .+.+..+|... ++..++ ||+|++...
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~ 135 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHD-NGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD 135 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHH-HSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-CCCCceEEEEEecHHHHhccCCC-CCEEEEcCC
Confidence 58999999999999999854 688999988887666644433 232 47888888654 354456 999997632
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
..+...++.++.++|||||++++...
T Consensus 136 ----~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 136 ----VFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp ----TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred ----hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 34557799999999999999998653
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.9e-09 Score=106.11 Aligned_cols=98 Identities=15% Similarity=0.140 Sum_probs=68.3
Q ss_pred CCEEEEECCCCcHHHHHHhcC-CCccccCChhhhhHHHHH-H-HHHcCCCeEEE--EeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQ-F-ALERGIPSTLG--VLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-~V~~vdis~~dls~a~i~-~-A~~rg~~v~~~--~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
..+|||||||+|.++..+++. .|+++|+++ +...+..+ . ....+.++.+. ++|+..++ +++||+|+|...
T Consensus 75 g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~~-- 149 (265)
T 2oxt_A 75 TGRVVDLGCGRGGWSYYAASRPHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCDVG-- 149 (265)
T ss_dssp CEEEEEESCTTSHHHHHHHTSTTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEECCC--
T ss_pred CCEEEEeCcCCCHHHHHHHHcCcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEeCc--
Confidence 468999999999999999874 799999988 42111000 0 00011256788 88888776 578999998653
Q ss_pred ccccch----H---HHHHHHHhhcCCCc--EEEEEcC
Q 008748 231 DWLQRD----G---ILLLELDRLLRPGG--YFVYSSP 258 (555)
Q Consensus 231 ~~~~d~----~---~~L~el~RvLkPGG--~lvis~P 258 (555)
++..+. . .+|.++.++||||| .|++.+.
T Consensus 150 ~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 150 ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 332221 1 37899999999999 9998664
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.2e-09 Score=108.55 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=68.9
Q ss_pred CCEEEEECCCCcHHHHHHhcC-CCccccCChhhhhHHHHHH--HHHcCCCeEEE--EeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQF--ALERGIPSTLG--VLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-~V~~vdis~~dls~a~i~~--A~~rg~~v~~~--~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
..+|||+|||+|.++..+++. .|+++|+++ +...+..+. ....+.++.+. ++|+..++ +++||+|+|...
T Consensus 83 g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~~-- 157 (276)
T 2wa2_A 83 KGTVVDLGCGRGSWSYYAASQPNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCDIG-- 157 (276)
T ss_dssp CEEEEEESCTTCHHHHHHHTSTTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEECCC--
T ss_pred CCEEEEeccCCCHHHHHHHHcCCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEECCC--
Confidence 468999999999999999874 799999988 432111000 00001257788 88888776 578999998753
Q ss_pred ccccch----H---HHHHHHHhhcCCCc--EEEEEcCC
Q 008748 231 DWLQRD----G---ILLLELDRLLRPGG--YFVYSSPE 259 (555)
Q Consensus 231 ~~~~d~----~---~~L~el~RvLkPGG--~lvis~P~ 259 (555)
++..++ . .+|.++.++||||| .|++....
T Consensus 158 ~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 158 ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 332221 1 37899999999999 99986543
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.8e-09 Score=109.83 Aligned_cols=124 Identities=10% Similarity=0.041 Sum_probs=87.6
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|||||||+|.++..++++ .++++|+ +.++ +.+++ ..++.+..+|+.. +++ +||+|+++. ++|
T Consensus 194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-----~~a~~-~~~v~~~~~d~~~-~~~--~~D~v~~~~-vlh 262 (358)
T 1zg3_A 194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVV-----GNLTG-NENLNFVGGDMFK-SIP--SADAVLLKW-VLH 262 (358)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHH-----SSCCC-CSSEEEEECCTTT-CCC--CCSEEEEES-CGG
T ss_pred CCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHH-----hhccc-CCCcEEEeCccCC-CCC--CceEEEEcc-ccc
Confidence 368999999999999999864 3555565 3333 33322 2458889999876 666 499999888 688
Q ss_pred cccchH--HHHHHHHhhcCC---CcEEEEEcCCCCC--CC---hhhHH---------------HHHHHHHHHHhcCcEEE
Q 008748 232 WLQRDG--ILLLELDRLLRP---GGYFVYSSPEAYA--HD---PENRR---------------IWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 232 ~~~d~~--~~L~el~RvLkP---GG~lvis~P~~~~--~~---~e~~~---------------~~~~l~~l~~~~gw~vv 286 (555)
+..+.. .+|+++.++|+| ||++++..+.... .. ..... ...++.+++++.||+++
T Consensus 263 ~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~ 342 (358)
T 1zg3_A 263 DWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSY 342 (358)
T ss_dssp GSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEE
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCee
Confidence 877766 899999999999 9999997643211 11 01100 12377889999999887
Q ss_pred EEee
Q 008748 287 SKKD 290 (555)
Q Consensus 287 ~~~~ 290 (555)
....
T Consensus 343 ~~~~ 346 (358)
T 1zg3_A 343 KITP 346 (358)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6544
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=5.2e-10 Score=124.01 Aligned_cols=100 Identities=19% Similarity=0.174 Sum_probs=78.0
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC-CCeEEEEeCCCCC--CCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRL--PYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~d~~~L--p~~d~sFDlVv~s~~~ 229 (555)
++.+|||||||.|.++..|++. .|+|+|+++.++..++. .|.+.+ .++.+.+++++++ ++.+++||+|+|.. +
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e-~ 143 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRA-LAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS-V 143 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES-C
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHH-HHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc-c
Confidence 3468999999999999999974 78899998888877663 344444 6789999998887 46778999999988 6
Q ss_pred cccccchHH--HHHHHHhhcCCCcEEEEE
Q 008748 230 IDWLQRDGI--LLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 230 l~~~~d~~~--~L~el~RvLkPGG~lvis 256 (555)
++|++++.. .+..+.+.|+++|..++.
T Consensus 144 ~ehv~~~~~~~~~~~~~~tl~~~~~~~~~ 172 (569)
T 4azs_A 144 FHHIVHLHGIDEVKRLLSRLADVTQAVIL 172 (569)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHSSEEEE
T ss_pred hhcCCCHHHHHHHHHHHHHhccccceeeE
Confidence 999988753 345667778777765543
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.86 E-value=3.2e-10 Score=111.77 Aligned_cols=98 Identities=12% Similarity=0.176 Sum_probs=64.2
Q ss_pred CCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCC---CCC---CCCccEE
Q 008748 156 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL---PYP---SRSFELA 223 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~L---p~~---d~sFDlV 223 (555)
..+|||+|||+|.++..++. ..|+++|+++.++..+..+.. ..+. ++.+..+|+... +++ +++||+|
T Consensus 66 ~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 66 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVE-QNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH-HTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHH-HcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 46899999999998888774 378999999998877765443 3343 388999987652 444 2689999
Q ss_pred Eeccccccccc---------------chHHHHHHHHhhcCCCcEEEE
Q 008748 224 HCSRCRIDWLQ---------------RDGILLLELDRLLRPGGYFVY 255 (555)
Q Consensus 224 v~s~~~l~~~~---------------d~~~~L~el~RvLkPGG~lvi 255 (555)
+|+.. .+... ....++.++.|+|||||.+.+
T Consensus 145 ~~npp-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~ 190 (254)
T 2h00_A 145 MCNPP-FFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF 190 (254)
T ss_dssp EECCC-CC-------------------------CTTTTHHHHTHHHH
T ss_pred EECCC-CccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence 98742 22111 112356677777777776654
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.85 E-value=3e-08 Score=94.18 Aligned_cols=121 Identities=9% Similarity=0.033 Sum_probs=84.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
..+|||+|||+|.++..+++. .++++|+++.++..+..+. ...+.++.+..+|+..++ ++||+|+++. ..+.
T Consensus 50 ~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~---~~~D~v~~~~-p~~~ 124 (207)
T 1wy7_A 50 GKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENL-GEFKGKFKVFIGDVSEFN---SRVDIVIMNP-PFGS 124 (207)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHT-GGGTTSEEEEESCGGGCC---CCCSEEEECC-CCSS
T ss_pred cCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHH-HHcCCCEEEEECchHHcC---CCCCEEEEcC-CCcc
Confidence 468999999999999999864 4889998887776555332 233447899999988775 4899999875 3333
Q ss_pred cc--chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 233 LQ--RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 233 ~~--d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
.. ....++.++.++| ||.+++..+.. .....+.+.+++.||++......
T Consensus 125 ~~~~~~~~~l~~~~~~l--~~~~~~~~~~~--------~~~~~~~~~l~~~g~~~~~~~~~ 175 (207)
T 1wy7_A 125 QRKHADRPFLLKAFEIS--DVVYSIHLAKP--------EVRRFIEKFSWEHGFVVTHRLTT 175 (207)
T ss_dssp SSTTTTHHHHHHHHHHC--SEEEEEEECCH--------HHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccCCchHHHHHHHHHhc--CcEEEEEeCCc--------CCHHHHHHHHHHCCCeEEEEEEE
Confidence 32 2356899999998 66555442221 23455677888999987655443
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.85 E-value=9.7e-09 Score=97.32 Aligned_cols=110 Identities=9% Similarity=0.079 Sum_probs=75.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
..+|||+|||+|.++..++.. .++++|+++.++.. |+++..++.+..+|+..++ ++||+|+++. .+++
T Consensus 52 ~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~-----a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~-p~~~ 122 (200)
T 1ne2_A 52 GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIET-----AKRNCGGVNFMVADVSEIS---GKYDTWIMNP-PFGS 122 (200)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHH-----HHHHCTTSEEEECCGGGCC---CCEEEEEECC-CC--
T ss_pred CCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHH-----HHHhcCCCEEEECcHHHCC---CCeeEEEECC-Cchh
Confidence 468999999999999998864 47788877766644 4443337889999988875 6899999876 4665
Q ss_pred ccc--hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEE
Q 008748 233 LQR--DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 233 ~~d--~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~ 287 (555)
..+ ...++.++.++| |+.+++..+. .+..+.+++++.| .+..
T Consensus 123 ~~~~~~~~~l~~~~~~~--g~~~~~~~~~----------~~~~~~~~~~~~g-~~~~ 166 (200)
T 1ne2_A 123 VVKHSDRAFIDKAFETS--MWIYSIGNAK----------ARDFLRREFSARG-DVFR 166 (200)
T ss_dssp -----CHHHHHHHHHHE--EEEEEEEEGG----------GHHHHHHHHHHHE-EEEE
T ss_pred ccCchhHHHHHHHHHhc--CcEEEEEcCc----------hHHHHHHHHHHCC-CEEE
Confidence 543 246899999999 5544443322 1345667777887 5443
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.84 E-value=2.6e-09 Score=102.92 Aligned_cols=98 Identities=14% Similarity=0.150 Sum_probs=73.2
Q ss_pred CEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCC-C-CC----CCCccEE
Q 008748 157 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-YP----SRSFELA 223 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~L-p-~~----d~sFDlV 223 (555)
.+|||||||+|.++..|++. .|+++|+++.++..+...+. ..+. .+.+.++|+... + +. .++||+|
T Consensus 66 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v 144 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWE-KAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI 144 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHH-HTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred CEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHH-HCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence 58999999999999999863 68899999888776664443 3343 488888886432 2 11 1689999
Q ss_pred EecccccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 224 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 224 v~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
++.. ...+...++.++.++|||||++++....
T Consensus 145 ~~~~----~~~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 145 YIDA----DKANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp EECS----CGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EECC----CHHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 9544 2344567999999999999999996643
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.2e-08 Score=98.36 Aligned_cols=118 Identities=13% Similarity=0.063 Sum_probs=87.4
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCC-CCCCCCCCCccEEEecccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGT-KRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~-~~Lp~~d~sFDlVv~s~~~ 229 (555)
.+|||||||+|.++..++.. .|+++|+++..+..+..+.. ..+. .+.+..+|. ..++.. ..||+|+.....
T Consensus 17 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~-~~gl~~~i~~~~~d~l~~l~~~-~~~D~IviaG~G 94 (225)
T 3kr9_A 17 AILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVE-AHGLKEKIQVRLANGLAAFEET-DQVSVITIAGMG 94 (225)
T ss_dssp EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHH-HTTCTTTEEEEECSGGGGCCGG-GCCCEEEEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCCCceEEEEECchhhhcccC-cCCCEEEEcCCC
Confidence 58999999999999999874 58999999998877775544 4444 488888886 445432 269999865521
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
- .-...++.+....|+++|+|+++.-. ....+.+.+.+.||.++...
T Consensus 95 g---~~i~~Il~~~~~~L~~~~~lVlq~~~----------~~~~vr~~L~~~Gf~i~~e~ 141 (225)
T 3kr9_A 95 G---RLIARILEEGLGKLANVERLILQPNN----------REDDLRIWLQDHGFQIVAES 141 (225)
T ss_dssp H---HHHHHHHHHTGGGCTTCCEEEEEESS----------CHHHHHHHHHHTTEEEEEEE
T ss_pred h---HHHHHHHHHHHHHhCCCCEEEEECCC----------CHHHHHHHHHHCCCEEEEEE
Confidence 1 11356889999999999999985431 13467788899999988764
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.9e-09 Score=106.82 Aligned_cols=104 Identities=11% Similarity=0.038 Sum_probs=74.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHH--H--cCCCeEEEEeCCCC-CCCCCCCccEEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFAL--E--RGIPSTLGVLGTKR-LPYPSRSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~--~--rg~~v~~~~~d~~~-Lp~~d~sFDlVv~s 226 (555)
+.+|||||||+|.++..+++. .|+++|+++..+..++.++.. . ...++.+..+|+.. ++..+++||+|++.
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d 170 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID 170 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEc
Confidence 468999999999999999864 578899988877666544322 1 13578899998644 34445789999974
Q ss_pred cccccccc-----chHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 227 RCRIDWLQ-----RDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 227 ~~~l~~~~-----d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
. ..++.. ....+++++.++|+|||.+++.....
T Consensus 171 ~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~ 208 (296)
T 1inl_A 171 S-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP 208 (296)
T ss_dssp C-----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred C-CCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCc
Confidence 3 222121 12578999999999999999986543
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-08 Score=110.02 Aligned_cols=125 Identities=18% Similarity=0.170 Sum_probs=86.9
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCC--CCCCCccEEEe--
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHC-- 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp--~~d~sFDlVv~-- 225 (555)
+.+|||+|||+|..+..|+. ..|+++|+++..+..+..+. ...+. ++.+..+|...++ +++++||+|++
T Consensus 260 g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~-~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~ 338 (450)
T 2yxl_A 260 GETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFV-KRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDA 338 (450)
T ss_dssp TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHH-HHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEEC
T ss_pred cCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHH-HHcCCCcEEEEEcChhhcchhhccCCCCEEEEcC
Confidence 45899999999999999886 36889999988776665433 33344 6888888987776 55578999995
Q ss_pred --c-ccccccccch----------------HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhc-CcEE
Q 008748 226 --S-RCRIDWLQRD----------------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWKI 285 (555)
Q Consensus 226 --s-~~~l~~~~d~----------------~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~-gw~v 285 (555)
+ ...++..++. ..++.++.++|||||.+++++..... .+. -..+..++++. +|++
T Consensus 339 Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~--~en---e~~v~~~l~~~~~~~~ 413 (450)
T 2yxl_A 339 PCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFK--EEN---EKNIRWFLNVHPEFKL 413 (450)
T ss_dssp CCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG--GGT---HHHHHHHHHHCSSCEE
T ss_pred CCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh--hhH---HHHHHHHHHhCCCCEE
Confidence 2 2223322221 45899999999999999998865421 222 22455566665 6765
Q ss_pred E
Q 008748 286 V 286 (555)
Q Consensus 286 v 286 (555)
+
T Consensus 414 ~ 414 (450)
T 2yxl_A 414 V 414 (450)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.82 E-value=5.4e-09 Score=105.45 Aligned_cols=125 Identities=11% Similarity=0.102 Sum_probs=85.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHH----cCCCeEEEEeCCCC-CCCCCCCccEEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKR-LPYPSRSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~----rg~~v~~~~~d~~~-Lp~~d~sFDlVv~s 226 (555)
+.+|||||||+|.++..+++. .|+++|+++..+..++..+..- ...++.+..+|... ++..+++||+|++.
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d 155 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVD 155 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEES
T ss_pred CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEEC
Confidence 469999999999999999864 5888899888776665443221 13468899998654 34445789999975
Q ss_pred ccccccccc----hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 227 RCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 227 ~~~l~~~~d----~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
. ..++... ...+++++.++|+|||.+++.....+.. .+....+.+.+++. |..+
T Consensus 156 ~-~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~----~~~~~~~~~~l~~~-F~~v 213 (275)
T 1iy9_A 156 S-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFT----PELITNVQRDVKEI-FPIT 213 (275)
T ss_dssp C-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTC----HHHHHHHHHHHHTT-CSEE
T ss_pred C-CCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccc----HHHHHHHHHHHHHh-CCCe
Confidence 3 2222211 2569999999999999999976543321 23344555556655 5433
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.81 E-value=3e-09 Score=109.56 Aligned_cols=105 Identities=11% Similarity=0.025 Sum_probs=71.6
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHH----cCCCeEEEEeCCCC-CCCCCCCccEEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKR-LPYPSRSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~----rg~~v~~~~~d~~~-Lp~~d~sFDlVv~s 226 (555)
+.+|||||||+|.++..+++. .|+++|+++..+..++..+... ...++.+..+|+.. ++..+++||+|++.
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d 188 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD 188 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEc
Confidence 468999999999999999864 5788888887775555333211 13467888888654 33345789999975
Q ss_pred ccccccccch----HHHHHHHHhhcCCCcEEEEEcCCCC
Q 008748 227 RCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEAY 261 (555)
Q Consensus 227 ~~~l~~~~d~----~~~L~el~RvLkPGG~lvis~P~~~ 261 (555)
. ..++.+.. ..+++++.++|+|||.+++.....+
T Consensus 189 ~-~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~ 226 (314)
T 2b2c_A 189 S-SDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVW 226 (314)
T ss_dssp C-C-------------HHHHHHHHEEEEEEEEEECCCTT
T ss_pred C-CCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcc
Confidence 4 22222211 5689999999999999999764443
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.6e-09 Score=102.88 Aligned_cols=98 Identities=12% Similarity=0.168 Sum_probs=74.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCC-CCC--CCCccEEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-PYP--SRSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~L-p~~--d~sFDlVv~s 226 (555)
..+|||||||+|.++..+++. .|+++|+++..+..+..++. ..+. .+.+..+|.... +.. +++||+|++.
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVK-ALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHH-HTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 358999999999999988853 68889998887766654433 3343 588888887653 432 5789999976
Q ss_pred ccccccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 227 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 227 ~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
.. . .+...++.++.++|+|||.+++...
T Consensus 134 ~~-~---~~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 134 AA-K---GQYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp GG-G---SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred CC-H---HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 53 2 3557799999999999999999753
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.81 E-value=9.8e-10 Score=108.62 Aligned_cols=98 Identities=10% Similarity=0.022 Sum_probs=74.9
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCC-CCC-----CCCccE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-PYP-----SRSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~L-p~~-----d~sFDl 222 (555)
+.+|||||||+|..+..|+.. .|+++|+++.++..+..++. ..+. ++.+.++|+... +.. +++||+
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWR-EAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHH-HTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 358999999999999999862 68999999988877764443 3343 689999987543 321 478999
Q ss_pred EEecccccccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 223 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 223 Vv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
|++... ..+...++.++.++|||||++++...
T Consensus 140 V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 140 IFIDAD----KTNYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp EEEESC----GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEEcCC----hHHhHHHHHHHHHhcCCCeEEEEECC
Confidence 997642 34456689999999999999998653
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.80 E-value=7e-09 Score=112.76 Aligned_cols=97 Identities=16% Similarity=0.179 Sum_probs=72.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
..+|||||||+|.++..+++. .|+++|+++ ++..++ +.+...+ .++.+..+|+..++++ ++||+|+|.. .+
T Consensus 159 ~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~-~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~~-~~ 234 (480)
T 3b3j_A 159 DKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAE-VLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEP-MG 234 (480)
T ss_dssp TCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHH-HHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCC-CH
T ss_pred CCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHH-HHHHHcCCCCcEEEEECchhhCccC-CCeEEEEEeC-ch
Confidence 468999999999999988864 688899887 664444 3344444 3589999999888776 5899999865 33
Q ss_pred cccc--chHHHHHHHHhhcCCCcEEEEE
Q 008748 231 DWLQ--RDGILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 231 ~~~~--d~~~~L~el~RvLkPGG~lvis 256 (555)
++.. +....+.++.++|||||++++.
T Consensus 235 ~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 235 YMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp HHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred HhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4432 3345677899999999999963
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=5.6e-09 Score=106.98 Aligned_cols=106 Identities=12% Similarity=0.093 Sum_probs=74.8
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHH----cCCCeEEEEeCCCC-CCCCCCCccEEEe
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKR-LPYPSRSFELAHC 225 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~----rg~~v~~~~~d~~~-Lp~~d~sFDlVv~ 225 (555)
.+.+|||||||+|.++..++++ .++++|+++.++..++..+..- ...++.+..+|+.. ++..+++||+|++
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~ 174 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence 3469999999999999999864 5888999888776665443321 14568888888654 3445678999997
Q ss_pred ccccccccc----chHHHHHHHHhhcCCCcEEEEEcCCCC
Q 008748 226 SRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAY 261 (555)
Q Consensus 226 s~~~l~~~~----d~~~~L~el~RvLkPGG~lvis~P~~~ 261 (555)
.. ..++.+ ....+++++.++|+|||.+++.....+
T Consensus 175 d~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~ 213 (304)
T 2o07_A 175 DS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQW 213 (304)
T ss_dssp EC-C-----------CHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred CC-CCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 53 232221 124589999999999999999764433
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=4e-09 Score=108.36 Aligned_cols=122 Identities=12% Similarity=0.104 Sum_probs=83.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHH-Hc----CCCeEEEEeCCCC-CCCCCCCccEEEe
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFAL-ER----GIPSTLGVLGTKR-LPYPSRSFELAHC 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~-~r----g~~v~~~~~d~~~-Lp~~d~sFDlVv~ 225 (555)
+.+|||||||+|.++..+++. .++++|+++..+..++..+.. .. ..++.+..+|+.. ++..+++||+|++
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII 157 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEE
Confidence 469999999999999999864 588999998887666644432 11 3568899998655 3444678999998
Q ss_pred ccccccc---cc--c--hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhc
Q 008748 226 SRCRIDW---LQ--R--DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 281 (555)
Q Consensus 226 s~~~l~~---~~--d--~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~ 281 (555)
.. ..++ .+ . ...+++++.++|+|||.+++.....+... .+....+.+.+++.
T Consensus 158 d~-~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~---~~~~~~~~~~l~~~ 216 (314)
T 1uir_A 158 DL-TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTH---HRVHPVVHRTVREA 216 (314)
T ss_dssp EC-CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC------CHHHHHHHHHHTT
T ss_pred CC-CCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccC---HHHHHHHHHHHHHH
Confidence 65 3443 11 1 25789999999999999998653322111 12344455555554
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=5.3e-09 Score=107.24 Aligned_cols=99 Identities=15% Similarity=0.158 Sum_probs=67.1
Q ss_pred CCEEEEECCCCcHHHHHHhcC-CCccccC----ChhhhhHHHHHHHHHcC-CCeEEEEe-CCCCCCCCCCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-DIIAMSL----APNDVHENQIQFALERG-IPSTLGVL-GTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-~V~~vdi----s~~dls~a~i~~A~~rg-~~v~~~~~-d~~~Lp~~d~sFDlVv~s~~ 228 (555)
..+|||||||+|.++..++++ .|+++|+ +..++.... ....+ ..+.+.++ |+..++ .++||+|+|..+
T Consensus 83 g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd~~ 157 (305)
T 2p41_A 83 EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIP---MSTYGWNLVRLQSGVDVFFIP--PERCDTLLCDIG 157 (305)
T ss_dssp CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC---CCSTTGGGEEEECSCCTTTSC--CCCCSEEEECCC
T ss_pred CCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHH---hhhcCCCCeEEEeccccccCC--cCCCCEEEECCc
Confidence 368999999999999999885 6889988 343221110 01111 34677777 776665 468999998653
Q ss_pred c--cccccchH---HHHHHHHhhcCCCcEEEEEcCC
Q 008748 229 R--IDWLQRDG---ILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 229 ~--l~~~~d~~---~~L~el~RvLkPGG~lvis~P~ 259 (555)
. .++..+.. .+|.++.++|||||.|++....
T Consensus 158 ~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~ 193 (305)
T 2p41_A 158 ESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 193 (305)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred cccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 2 12332322 4789999999999999986654
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=9.1e-09 Score=108.68 Aligned_cols=126 Identities=12% Similarity=0.082 Sum_probs=88.7
Q ss_pred CEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC---CeEEEEeCCCC-CCC---CCCCccEEEec
Q 008748 157 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKR-LPY---PSRSFELAHCS 226 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~---~v~~~~~d~~~-Lp~---~d~sFDlVv~s 226 (555)
.+|||+|||+|.++..++.. .|+++|+++.++..+..+... .+. ++.+..+|+.. ++. ..++||+|++.
T Consensus 214 ~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~-n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~D 292 (385)
T 2b78_A 214 KTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEA-NHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIID 292 (385)
T ss_dssp CEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHH-TTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-cCCCccceEEEECCHHHHHHHHHHhCCCccEEEEC
Confidence 58999999999999999863 689999999998877755443 343 68899998654 221 24589999974
Q ss_pred ccc--------cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 227 RCR--------IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 227 ~~~--------l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
... .....+...++.++.++|+|||+++++...... .....++.+...+...|+.++
T Consensus 293 PP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~---~~~~~~~~i~~~~~~~g~~~~ 357 (385)
T 2b78_A 293 PPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANM---TVSQFKKQIEKGFGKQKHTYL 357 (385)
T ss_dssp CCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS---CHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC---CHHHHHHHHHHHHHHcCCcEE
Confidence 321 122233345788889999999999998765321 111345566677788888743
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.77 E-value=6.9e-09 Score=104.25 Aligned_cols=104 Identities=15% Similarity=0.086 Sum_probs=76.4
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCCC----CCCCccEEEe
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPY----PSRSFELAHC 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp~----~d~sFDlVv~ 225 (555)
..+|||+|||+|..+..|++ ..|+++|+++..+..+..+. ...+. ++.+..+|+..++. .+++||+|++
T Consensus 84 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~-~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 162 (274)
T 3ajd_A 84 DDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNI-NRMGVLNTIIINADMRKYKDYLLKNEIFFDKILL 162 (274)
T ss_dssp TCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHH-HHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred cCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHH-HHhCCCcEEEEeCChHhcchhhhhccccCCEEEE
Confidence 46899999999999988885 36889999988876655433 33444 68888888776654 2578999997
Q ss_pred ccc-----ccc------------cccchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 226 SRC-----RID------------WLQRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 226 s~~-----~l~------------~~~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
... .++ +......++.++.++|||||.+++++...
T Consensus 163 d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 163 DAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 521 111 11334678999999999999999988654
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=5e-09 Score=108.11 Aligned_cols=121 Identities=16% Similarity=0.145 Sum_probs=80.1
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHH----HcCCCeEEEEeCCCC-CCCCCCCccEEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFAL----ERGIPSTLGVLGTKR-LPYPSRSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~----~rg~~v~~~~~d~~~-Lp~~d~sFDlVv~s 226 (555)
+.+|||||||+|.++..+++. .|+++|+++..+..++.++.. -...++.+..+|... ++..+++||+|++.
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d 196 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVD 196 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEEC
Confidence 468999999999999999864 578888888776555533221 013468888888644 23335789999975
Q ss_pred cccccccc--ch--HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhc
Q 008748 227 RCRIDWLQ--RD--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 281 (555)
Q Consensus 227 ~~~l~~~~--d~--~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~ 281 (555)
. ..++.+ .. ..+++++.++|+|||.+++.....+.. .+....+.+.+++.
T Consensus 197 ~-~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~----~~~~~~~~~~l~~~ 250 (321)
T 2pt6_A 197 S-SDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIH----VGTIKNMIGYAKKL 250 (321)
T ss_dssp C-CCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTC----HHHHHHHHHHHHTT
T ss_pred C-cCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccC----HHHHHHHHHHHHHH
Confidence 4 222211 11 578999999999999999976543322 12334444555554
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=5e-09 Score=106.04 Aligned_cols=106 Identities=14% Similarity=0.133 Sum_probs=74.1
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHH----cCCCeEEEEeCCCCC-CCCCCCccEEEe
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKRL-PYPSRSFELAHC 225 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~----rg~~v~~~~~d~~~L-p~~d~sFDlVv~ 225 (555)
++.+|||||||+|.++..+++. .++++|+++..+..+...+... ...++.+.++|.... +..+++||+|++
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 157 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence 3469999999999999999864 5778888777665444322110 134678888886542 223578999997
Q ss_pred cccccccccc--h--HHHHHHHHhhcCCCcEEEEEcCCCC
Q 008748 226 SRCRIDWLQR--D--GILLLELDRLLRPGGYFVYSSPEAY 261 (555)
Q Consensus 226 s~~~l~~~~d--~--~~~L~el~RvLkPGG~lvis~P~~~ 261 (555)
.. ..++... . ..+++++.++|+|||.+++.....+
T Consensus 158 d~-~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~ 196 (283)
T 2i7c_A 158 DS-SDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLW 196 (283)
T ss_dssp EC-CCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred cC-CCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcc
Confidence 43 2333222 1 5799999999999999999876543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=3.7e-08 Score=99.74 Aligned_cols=166 Identities=12% Similarity=0.108 Sum_probs=107.8
Q ss_pred cCceeeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc---CCCccccCChhhhhHH
Q 008748 115 NGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHEN 191 (555)
Q Consensus 115 ~~e~~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a 191 (555)
.|-++.|.-....|..+...-...+.+++. ++.+|||+|||+|.++..++. ..|+++|+++..+..+
T Consensus 95 ~G~~~~~D~~k~~f~~~~~~er~ri~~~~~----------~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~ 164 (278)
T 3k6r_A 95 NGIKYKLDVAKIMFSPANVKERVRMAKVAK----------PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFL 164 (278)
T ss_dssp TTEEEEEETTTSCCCGGGHHHHHHHHHHCC----------TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHH
T ss_pred CCEEEEEeccceEEcCCcHHHHHHHHHhcC----------CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHH
Confidence 344555555556666666555555666553 246899999999999988875 3689999999888666
Q ss_pred HHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHH
Q 008748 192 QIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRR 269 (555)
Q Consensus 192 ~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~ 269 (555)
..+.. ..+. .+.+..+|...++. .+.||.|++.. . .....++..+.++||+||++.+..-..-... ...
T Consensus 165 ~~N~~-~N~v~~~v~~~~~D~~~~~~-~~~~D~Vi~~~--p---~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~--~~~ 235 (278)
T 3k6r_A 165 VENIH-LNKVEDRMSAYNMDNRDFPG-ENIADRILMGY--V---VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM--PRE 235 (278)
T ss_dssp HHHHH-HTTCTTTEEEECSCTTTCCC-CSCEEEEEECC--C---SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT--TTT
T ss_pred HHHHH-HcCCCCcEEEEeCcHHHhcc-ccCCCEEEECC--C---CcHHHHHHHHHHHcCCCCEEEEEeeeccccc--chh
Confidence 65444 3343 47888899887764 47899998653 2 2234578889999999999876331100000 011
Q ss_pred HHHHHHHHHHhcCcEEEEEeeceEEeecCC
Q 008748 270 IWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 299 (555)
Q Consensus 270 ~~~~l~~l~~~~gw~vv~~~~~~~iw~KPl 299 (555)
..+.++++++..|+++........-+-.|-
T Consensus 236 ~~e~i~~~~~~~g~~v~~~~~~~Vk~yaP~ 265 (278)
T 3k6r_A 236 PFETFKRITKEYGYDVEKLNELKIKRYAPG 265 (278)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEEEEETTT
T ss_pred HHHHHHHHHHHcCCcEEEEEEEEEEeECcC
Confidence 345677888999998754443333333443
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.75 E-value=8.3e-09 Score=100.91 Aligned_cols=97 Identities=14% Similarity=0.205 Sum_probs=71.6
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCC-CC-------------
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP------------- 214 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~-Lp------------- 214 (555)
..+|||||||+|.++..++.. .++++|+++..+..++..+. +.+. .+.+..+|... ++
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWK-ENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHH-HTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 358999999999999988753 68889998887766654433 3333 37888887533 22
Q ss_pred -CCC--CCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 215 -YPS--RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 215 -~~d--~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
|++ ++||+|++... ..+...++.++.++|+|||++++..
T Consensus 140 ~f~~~~~~fD~I~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 140 DFAFGPSSIDLFFLDAD----KENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp TTCCSTTCEEEEEECSC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cccCCCCCcCEEEEeCC----HHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 333 78999997652 2344678999999999999999975
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.75 E-value=8.3e-09 Score=100.88 Aligned_cols=97 Identities=20% Similarity=0.169 Sum_probs=72.6
Q ss_pred CEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCC----CCCCCC--CCccEE
Q 008748 157 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTK----RLPYPS--RSFELA 223 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~----~Lp~~d--~sFDlV 223 (555)
.+|||||||+|.++..|+.. .++++|+++..+..+...+.. .+. .+.+..+|+. .++..+ ++||+|
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V 152 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQK-AGVAEKISLRLGPALATLEQLTQGKPLPEFDLI 152 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHH-HTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence 58999999999999999863 588899988877666644433 333 4788888853 233333 789999
Q ss_pred EecccccccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 224 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 224 v~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
++... ..+...++.++.++|+|||++++...
T Consensus 153 ~~d~~----~~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 153 FIDAD----KRNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp EECSC----GGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred EECCC----HHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 96642 24456789999999999999999653
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.5e-08 Score=106.88 Aligned_cols=97 Identities=13% Similarity=0.148 Sum_probs=73.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEec--cc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCS--RC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s--~~ 228 (555)
.++|||||||+|.++..++++ .|+++|.++ ++..+ .+.++..+. .+.++.++++.+.++ +.||+|+|- ..
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a-~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~ 160 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQA-REVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGY 160 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHH-HHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBT
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHH-HHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecccc
Confidence 358999999999998887764 699999986 44444 355555553 588999999988887 679999972 12
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEEE
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFVY 255 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lvi 255 (555)
.+.+......++....|.|||||.++-
T Consensus 161 ~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 161 GLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp TBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred cccccchhhhHHHHHHhhCCCCceECC
Confidence 344444557788899999999999883
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=5.9e-09 Score=103.33 Aligned_cols=97 Identities=12% Similarity=0.093 Sum_probs=73.2
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCC-C-C-----CCCCcc
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-Y-----PSRSFE 221 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~L-p-~-----~d~sFD 221 (555)
+.+|||||||+|..+..|+. ..++++|+++.++..+..++. +.+. ++.+..+|+... + + ++++||
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~-~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIK-KAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHH-HTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 35899999999999998875 368899999988866664443 3343 578888886442 3 2 157899
Q ss_pred EEEecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 222 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 222 lVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
+|++... ..+...++.++.++|||||++++..
T Consensus 159 ~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 159 FIFVDAD----KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp EEEECSC----STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEcCc----hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 9997542 2345678999999999999999854
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.2e-08 Score=100.20 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=72.7
Q ss_pred CEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCc---cEEEeccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSF---ELAHCSRC 228 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sF---DlVv~s~~ 228 (555)
.+|||+|||+|.++..++.. .|+++|+++.++..+..+. ...+. ++.+..+|.... ++ ++| |+|+++-.
T Consensus 125 ~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~-~~~~l~~~v~~~~~D~~~~-~~-~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 125 KTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNA-ERHGVSDRFFVRKGEFLEP-FK-EKFASIEMILSNPP 201 (284)
T ss_dssp CEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHH-HHTTCTTSEEEEESSTTGG-GG-GGTTTCCEEEECCC
T ss_pred CEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCceEEEECcchhh-cc-cccCCCCEEEEcCC
Confidence 58999999999999988853 6889999998887776444 33444 388999997652 23 578 99998621
Q ss_pred ccc----------ccc--------chHHHHHHHH-hhcCCCcEEEEEcCC
Q 008748 229 RID----------WLQ--------RDGILLLELD-RLLRPGGYFVYSSPE 259 (555)
Q Consensus 229 ~l~----------~~~--------d~~~~L~el~-RvLkPGG~lvis~P~ 259 (555)
.+. |.+ +...+++++. +.|+|||++++..+.
T Consensus 202 yi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~ 251 (284)
T 1nv8_A 202 YVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 251 (284)
T ss_dssp CBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred CCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 010 111 1226899999 999999999997654
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=7.1e-09 Score=104.76 Aligned_cols=101 Identities=13% Similarity=0.103 Sum_probs=72.1
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHH-----------cCCCeEEEEeCCCC-CCCCCCCc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE-----------RGIPSTLGVLGTKR-LPYPSRSF 220 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~-----------rg~~v~~~~~d~~~-Lp~~d~sF 220 (555)
+.+|||||||+|.++..+++. .++++|+++..+..++..+ .. ...++.+..+|... ++. +++|
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f 153 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF 153 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred CCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence 468999999999999999864 6888888888776665443 11 23467888888643 222 5789
Q ss_pred cEEEeccccccccc--c--hHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 221 ELAHCSRCRIDWLQ--R--DGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 221 DlVv~s~~~l~~~~--d--~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
|+|++.. ..++.. . ...+++++.++|+|||.+++....
T Consensus 154 D~Ii~d~-~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 195 (281)
T 1mjf_A 154 DVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 195 (281)
T ss_dssp EEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEECC-CCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 9999754 222221 1 256899999999999999997543
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.71 E-value=5e-09 Score=108.02 Aligned_cols=101 Identities=14% Similarity=0.181 Sum_probs=70.9
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC--CCCCCCccEEEeccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL--PYPSRSFELAHCSRCRI 230 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L--p~~d~sFDlVv~s~~~l 230 (555)
.+|||||||+|.++..+++. .++++|+++..+..++..+......++.+.++|...+ .+++++||+|++.. ..
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~-~~ 169 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDV-FA 169 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECC-ST
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECC-CC
Confidence 48999999999999999872 5677777776664444332211234688999996544 34567899999743 12
Q ss_pred ccc-c---chHHHHHHHHhhcCCCcEEEEEcC
Q 008748 231 DWL-Q---RDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 231 ~~~-~---d~~~~L~el~RvLkPGG~lvis~P 258 (555)
+.. . ....+++++.++|+|||+|++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 211 1 125799999999999999998664
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=4.3e-08 Score=98.11 Aligned_cols=131 Identities=10% Similarity=0.047 Sum_probs=91.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
+.+|||||||+|-++..++.. .++++|+++.++.-... ++...+.+..+.+.|...-+. .+.||+|++.- ++|
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~-~l~~~g~~~~~~v~D~~~~~p-~~~~DvaL~lk-ti~ 209 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDE-ALTRLNVPHRTNVADLLEDRL-DEPADVTLLLK-TLP 209 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHH-HHHHTTCCEEEEECCTTTSCC-CSCCSEEEETT-CHH
T ss_pred CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH-HHHhcCCCceEEEeeecccCC-CCCcchHHHHH-HHH
Confidence 569999999999999888653 78999999988866663 334457888899888765554 47799999666 788
Q ss_pred cccchHH-HHHHHHhhcCCCcEEEEEcCC-CCCCChhhHHHH-HHHHHHHHhcCcEEEEEe
Q 008748 232 WLQRDGI-LLLELDRLLRPGGYFVYSSPE-AYAHDPENRRIW-NAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 232 ~~~d~~~-~L~el~RvLkPGG~lvis~P~-~~~~~~e~~~~~-~~l~~l~~~~gw~vv~~~ 289 (555)
+.++..+ ..-++.+.|+|+|.++-..-. ...+.+...+.+ ..+++.+.+.||.+...+
T Consensus 210 ~Le~q~kg~g~~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~ 270 (281)
T 3lcv_B 210 CLETQQRGSGWEVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLE 270 (281)
T ss_dssp HHHHHSTTHHHHHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HhhhhhhHHHHHHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeee
Confidence 8866532 333999999999988853321 222334444434 467888998999554433
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.4e-08 Score=106.91 Aligned_cols=125 Identities=13% Similarity=0.039 Sum_probs=85.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCC----CCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY----PSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~----~d~sFDlVv~s~~~ 229 (555)
..+|||+|||+|.++..++.. .|+++|+++.++..+..+.......++.+..+|+..+.. .+++||+|++.-..
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~ 289 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPA 289 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred CCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCCC
Confidence 358999999999999998863 789999999888777655443332348899888755421 24689999974311
Q ss_pred --------cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCc
Q 008748 230 --------IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 283 (555)
Q Consensus 230 --------l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw 283 (555)
.........++.++.++|+|||++++++..... .. ......+.+.+...|.
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~--~~~~~~i~~~~~~~g~ 348 (382)
T 1wxx_A 290 FAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHM-TE--PLFYAMVAEAAQDAHR 348 (382)
T ss_dssp SCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS-CH--HHHHHHHHHHHHHTTC
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCC-CH--HHHHHHHHHHHHHcCC
Confidence 111234466899999999999999998765321 11 1123344556667764
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.68 E-value=5.3e-08 Score=104.15 Aligned_cols=125 Identities=14% Similarity=0.132 Sum_probs=87.0
Q ss_pred CCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--CCCCCccEEEe----
Q 008748 156 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHC---- 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--~~d~sFDlVv~---- 225 (555)
+.+|||+|||+|..+..+++ ..|+++|+++..+..+..+ +...+.++.+..+|...++ +++++||+|++
T Consensus 247 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~-~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 325 (429)
T 1sqg_A 247 GEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDN-LKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPC 325 (429)
T ss_dssp TCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHH-HHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCC
T ss_pred cCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH-HHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCCC
Confidence 46899999999999999886 3689999999887666533 3445667888899988776 56678999995
Q ss_pred cc-cccccccch----------------HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhc-CcEEE
Q 008748 226 SR-CRIDWLQRD----------------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWKIV 286 (555)
Q Consensus 226 s~-~~l~~~~d~----------------~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~-gw~vv 286 (555)
+. ..++..++. ..++.++.++|||||++++++..... .+.. ..+..++++. +|+++
T Consensus 326 sg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~--~ene---~~v~~~l~~~~~~~~~ 399 (429)
T 1sqg_A 326 SATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP--EENS---LQIKAFLQRTADAELC 399 (429)
T ss_dssp CCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG--GGTH---HHHHHHHHHCTTCEEC
T ss_pred CcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh--hhHH---HHHHHHHHhCCCCEEe
Confidence 22 122222221 36799999999999999998855421 1221 2344555554 57654
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.4e-08 Score=103.89 Aligned_cols=126 Identities=13% Similarity=-0.007 Sum_probs=84.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC-CCCCCCccEEEecccccc-
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PYPSRSFELAHCSRCRID- 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L-p~~d~sFDlVv~s~~~l~- 231 (555)
+.+|||+|||+|.++..++.. .|+++|+++.++..+..+.. ..+....+.++|+..+ +...+.||+|++.-..+.
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~-~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~ 293 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAAL-RLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVK 293 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-HHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCS
T ss_pred CCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHH-HhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCC
Confidence 468999999999999999863 58999999998877775544 4455556778886543 221344999997532111
Q ss_pred -------cccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEE
Q 008748 232 -------WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 285 (555)
Q Consensus 232 -------~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~v 285 (555)
...+...++..+.++|+|||++++++..... ......+.+...+...|...
T Consensus 294 ~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~---~~~~f~~~v~~a~~~~g~~~ 351 (393)
T 4dmg_A 294 RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHL---RLEDLLEVARRAAADLGRRL 351 (393)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS---CHHHHHHHHHHHHHHHTCCE
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCC---CHHHHHHHHHHHHHHhCCeE
Confidence 1123356899999999999999977654321 11123345556666666543
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-07 Score=98.54 Aligned_cols=94 Identities=12% Similarity=0.107 Sum_probs=72.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|||+|||+|.++.. +.. .|+++|+++.++..++.+.. ..+. ++.+..+|+..+. ++||+|++.. ..
T Consensus 196 ~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~-~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dp--P~ 268 (336)
T 2yx1_A 196 NDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIK-LNKLEHKIIPILSDVREVD---VKGNRVIMNL--PK 268 (336)
T ss_dssp TCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHH-HTTCTTTEEEEESCGGGCC---CCEEEEEECC--TT
T ss_pred CCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEECChHHhc---CCCcEEEECC--cH
Confidence 35899999999999999 753 68899999988877765444 3343 5899999987765 7899999753 11
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
+ ...++.++.++|+|||.+++....
T Consensus 269 ~---~~~~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 269 F---AHKFIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp T---GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred h---HHHHHHHHHHHcCCCCEEEEEEee
Confidence 1 236899999999999999986644
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=1e-08 Score=98.99 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=72.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCC-C-CC--C--CCccE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRL-P-YP--S--RSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~L-p-~~--d--~sFDl 222 (555)
..+|||||||+|.++..++.. .++++|+++..+..+...+. ..+ .++.+..+|+... + +. . ++||+
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~ 148 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWR-QAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 148 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHH-HTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence 358999999999999999863 68899999888766664433 334 3688888886432 1 11 1 68999
Q ss_pred EEecccccccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 223 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 223 Vv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
|++... ..+...++.++.++|+|||.+++...
T Consensus 149 v~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 149 AVVDAD----KENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp EEECSC----STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEECCC----HHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 997542 23446789999999999999998653
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.1e-08 Score=100.61 Aligned_cols=96 Identities=16% Similarity=0.112 Sum_probs=70.3
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHH----HcCCCeEEEEeCCCCCCCCCCCccEEEeccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFAL----ERGIPSTLGVLGTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~----~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~ 228 (555)
.+++|||||||+|.++..++.. .|+++|+++.++..+...+.. -...++.+..+|..... ++||+|++..
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d~- 147 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCLQ- 147 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEESS-
T ss_pred CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEECC-
Confidence 3469999999999999988864 577788877766544322211 11346888888876654 7899999652
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
.++..+++++.++|+|||.+++....
T Consensus 148 -----~dp~~~~~~~~~~L~pgG~lv~~~~~ 173 (262)
T 2cmg_A 148 -----EPDIHRIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_dssp -----CCCHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred -----CChHHHHHHHHHhcCCCcEEEEEcCC
Confidence 24456899999999999999996543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=6.8e-08 Score=109.67 Aligned_cols=122 Identities=16% Similarity=0.097 Sum_probs=87.3
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCC-CCCCCCCccEEEeccc-
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKR-LPYPSRSFELAHCSRC- 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~-Lp~~d~sFDlVv~s~~- 228 (555)
+.+|||+|||+|.++..++.. .|+++|+++.++..+..+.+.... .++.+.++|+.. ++...++||+|++.-.
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~ 619 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPT 619 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCCS
T ss_pred CCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCcc
Confidence 358999999999999998853 489999999998877755544332 258899999655 4445578999997432
Q ss_pred ---------ccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 229 ---------RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 229 ---------~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
..+...+...++.++.++|+|||+|+++......... .+.+++.|++..
T Consensus 620 f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~---------~~~l~~~g~~~~ 677 (703)
T 3v97_A 620 FSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMD---------LDGLAKLGLKAQ 677 (703)
T ss_dssp BC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCC---------HHHHHHTTEEEE
T ss_pred ccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccC---------HHHHHHcCCcee
Confidence 1233345567899999999999999998865321111 345567787643
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.4e-07 Score=98.10 Aligned_cols=119 Identities=16% Similarity=0.165 Sum_probs=81.9
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCC----CCCCCCCccEEEeccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR----LPYPSRSFELAHCSRC 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~----Lp~~d~sFDlVv~s~~ 228 (555)
..+|||+|||+|.++..|+.. .|+++|+++.++..+..+. ...+. ++.+..+|+.. +++++++||+|++.-.
T Consensus 287 ~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~-~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPP 365 (433)
T 1uwv_A 287 EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNA-RLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPA 365 (433)
T ss_dssp TCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHH-HHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCC
T ss_pred CCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHH-HHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEECCC
Confidence 358999999999999999974 7899999998887776444 33443 68999999766 3456678999997532
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
+..- ..+++.+. .++|++.++++..+ ..+.+-...+.+.||.+....
T Consensus 366 ---r~g~-~~~~~~l~-~~~p~~ivyvsc~p---------~tlard~~~l~~~Gy~~~~~~ 412 (433)
T 1uwv_A 366 ---RAGA-AGVMQQII-KLEPIRIVYVSCNP---------ATLARDSEALLKAGYTIARLA 412 (433)
T ss_dssp ---TTCC-HHHHHHHH-HHCCSEEEEEESCH---------HHHHHHHHHHHHTTCEEEEEE
T ss_pred ---CccH-HHHHHHHH-hcCCCeEEEEECCh---------HHHHhhHHHHHHCCcEEEEEE
Confidence 2111 23555554 37899988886532 122222344566799887643
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=6e-08 Score=96.11 Aligned_cols=131 Identities=16% Similarity=0.079 Sum_probs=86.8
Q ss_pred CCCEEEEECCCCcHHHHHHhc-CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLS-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~-~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
.+.+|||||||+|.++..+.. ..++++||++.++.-+... +...+.+..+.++|....+.+ ++||+|++.- ++|+.
T Consensus 105 ~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~~-~~~~g~~~~~~v~D~~~~~~~-~~~DvvLllk-~lh~L 181 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITPF-AREKDWDFTFALQDVLCAPPA-EAGDLALIFK-LLPLL 181 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHHH-HHHTTCEEEEEECCTTTSCCC-CBCSEEEEES-CHHHH
T ss_pred CCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHHH-HHhcCCCceEEEeecccCCCC-CCcchHHHHH-HHHHh
Confidence 457999999999999998773 4789999999888666533 445578889999998877766 4899999665 67887
Q ss_pred cchHH-HHHHHHhhcCCCcEEEEEcC--CCCCCChhhHHHH-HHHHHHHHhcCcEEEEEe
Q 008748 234 QRDGI-LLLELDRLLRPGGYFVYSSP--EAYAHDPENRRIW-NAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 234 ~d~~~-~L~el~RvLkPGG~lvis~P--~~~~~~~e~~~~~-~~l~~l~~~~gw~vv~~~ 289 (555)
++.+. ...++.+.|+++|.++- .| ....+.+...+.| ..+++.+.+..|.+.+.+
T Consensus 182 E~q~~~~~~~ll~aL~~~~vvVs-fPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~~~~~ 240 (253)
T 3frh_A 182 EREQAGSAMALLQSLNTPRMAVS-FPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDKKT 240 (253)
T ss_dssp HHHSTTHHHHHHHHCBCSEEEEE-EECC-----------CHHHHHHHHSCTTEEEEEEEE
T ss_pred hhhchhhHHHHHHHhcCCCEEEE-cChHHhcCCCcchhhHHHHHHHHHhhccchhhhhee
Confidence 55422 44488889999976664 34 2222222222323 245566666666554433
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.4e-08 Score=108.04 Aligned_cols=126 Identities=21% Similarity=0.192 Sum_probs=86.0
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC-CCCCCccEEEe----
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-YPSRSFELAHC---- 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp-~~d~sFDlVv~---- 225 (555)
+.+|||+|||+|..+..|++ ..|+++|+++.++..+..+. ...+..+.+..+|...++ +.+++||+|++
T Consensus 102 g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~-~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~Pc 180 (464)
T 3m6w_A 102 GERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENV-ERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAPC 180 (464)
T ss_dssp TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHH-HHHCCCCEEECSCHHHHHHHHCSCEEEEEEECCC
T ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCeEEEEECCHHHhhhhccccCCEEEECCCc
Confidence 46899999999999999884 25889999998886666444 334555888888876665 34578999994
Q ss_pred ccc-ccccccc----------------hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhc-CcEEEE
Q 008748 226 SRC-RIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM-CWKIVS 287 (555)
Q Consensus 226 s~~-~l~~~~d----------------~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~-gw~vv~ 287 (555)
+.. .+...++ ...+|.++.++|||||+|++++-.... .+.. ..+..++++. +|+++.
T Consensus 181 Sg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~--eEne---~vv~~~l~~~~~~~l~~ 255 (464)
T 3m6w_A 181 SGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAP--EENE---GVVAHFLKAHPEFRLED 255 (464)
T ss_dssp CCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG--GGTH---HHHHHHHHHCTTEEEEC
T ss_pred CCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCch--hcCH---HHHHHHHHHCCCcEEEe
Confidence 211 1211111 155899999999999999998755321 2222 3455666666 576653
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.63 E-value=2.5e-08 Score=105.32 Aligned_cols=126 Identities=13% Similarity=0.029 Sum_probs=86.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCC----CCCCccEEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPY----PSRSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~----~d~sFDlVv~s 226 (555)
..+|||+|||+|.++..++.. .|+++|+++.++..+..+.. ..+. ++.+..+|+..+.. ..++||+|++.
T Consensus 218 ~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~-~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d 296 (396)
T 2as0_A 218 GDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAK-LNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 296 (396)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH-HTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence 468999999999999999864 68999999988877765443 3444 68899998755421 25689999974
Q ss_pred ccc--------cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEE
Q 008748 227 RCR--------IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 285 (555)
Q Consensus 227 ~~~--------l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~v 285 (555)
... .+...+...++.++.++|+|||.+++++..... .. ......+.+.+...|...
T Consensus 297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~ 360 (396)
T 2as0_A 297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHV-DL--QMFKDMIIAAGAKAGKFL 360 (396)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTS-CH--HHHHHHHHHHHHHTTEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCC-CH--HHHHHHHHHHHHHcCCeE
Confidence 311 112234466899999999999999998765321 11 122334445666666544
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.7e-08 Score=103.32 Aligned_cols=125 Identities=10% Similarity=0.056 Sum_probs=86.3
Q ss_pred CEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC---CeEEEEeCCCCCCC----CCCCccEEEec
Q 008748 157 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRLPY----PSRSFELAHCS 226 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~---~v~~~~~d~~~Lp~----~d~sFDlVv~s 226 (555)
.+|||+|||+|.++..++.. .|+++|+++..+..+..+.. ..+. ++.+..+|+..+.. ..++||+|++.
T Consensus 222 ~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~-~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~d 300 (396)
T 3c0k_A 222 KRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVE-LNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_dssp CEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH-HTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-HcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEEC
Confidence 58999999999999999864 68999999988877765443 3454 68899998655421 14689999975
Q ss_pred ccc--------cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEE
Q 008748 227 RCR--------IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 285 (555)
Q Consensus 227 ~~~--------l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~v 285 (555)
-.. .........++.++.++|+|||+++++....... . ......+.+.+.+.|+..
T Consensus 301 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~--~~~~~~i~~~~~~~g~~~ 364 (396)
T 3c0k_A 301 PPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMT-S--DLFQKIIADAAIDAGRDV 364 (396)
T ss_dssp CSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCC-H--HHHHHHHHHHHHHHTCCE
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC-H--HHHHHHHHHHHHHcCCeE
Confidence 311 1122344678999999999999999987553211 1 122334455677777533
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.63 E-value=6e-08 Score=100.45 Aligned_cols=122 Identities=14% Similarity=0.196 Sum_probs=85.9
Q ss_pred CCCEEEEECCCCcHHHHHHhc---------CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEe
Q 008748 155 NIRNVLDVGCGVASFGAYLLS---------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHC 225 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~---------~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~ 225 (555)
...+|||+|||+|.++..+++ ..++|+|+++..+..+..+... .+..+.+..+|+... ...+.||+|++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~-~g~~~~i~~~D~l~~-~~~~~fD~Ii~ 207 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL-QRQKMTLLHQDGLAN-LLVDPVDVVIS 207 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH-HTCCCEEEESCTTSC-CCCCCEEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHh-CCCCceEEECCCCCc-cccCCccEEEE
Confidence 346899999999999887763 3578899988887766655443 355788888886553 34578999998
Q ss_pred cccccccccch------------------HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCc
Q 008748 226 SRCRIDWLQRD------------------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 283 (555)
Q Consensus 226 s~~~l~~~~d~------------------~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw 283 (555)
+. .+++.... ..++..+.+.|+|||+++++.|..+..... ...+.+.+.+.++
T Consensus 208 NP-Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~----~~~ir~~l~~~~~ 278 (344)
T 2f8l_A 208 DL-PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSD----FAKVDKFIKKNGH 278 (344)
T ss_dssp EC-CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTT----HHHHHHHHHHHEE
T ss_pred CC-CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCch----HHHHHHHHHhCCe
Confidence 75 33333211 147999999999999999998875332222 2456666666666
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.62 E-value=6.5e-08 Score=105.14 Aligned_cols=122 Identities=18% Similarity=0.113 Sum_probs=83.1
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCC-CCCCccEEEe----
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY-PSRSFELAHC---- 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~-~d~sFDlVv~---- 225 (555)
+.+|||+|||+|..+..|++ ..|+++|+++..+..+..+..+....++.+..+|...++. .+++||+|++
T Consensus 118 g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~Pc 197 (479)
T 2frx_A 118 PQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPC 197 (479)
T ss_dssp CSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECCC
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCCc
Confidence 46899999999999998886 2688999999888666644433322368888889887753 4578999996
Q ss_pred cc-cccccccc----------------hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcC
Q 008748 226 SR-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC 282 (555)
Q Consensus 226 s~-~~l~~~~d----------------~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g 282 (555)
+. ..+...++ ...+|.++.++|||||+|++++-..... +.. ..+..++++.+
T Consensus 198 Sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~--Ene---~vv~~~l~~~~ 266 (479)
T 2frx_A 198 SGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQE--ENE---AVCLWLKETYP 266 (479)
T ss_dssp CCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSST--TTH---HHHHHHHHHST
T ss_pred CCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcc--cCH---HHHHHHHHHCC
Confidence 21 11211111 1358999999999999999987654322 221 23455566554
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.61 E-value=7.8e-08 Score=97.33 Aligned_cols=109 Identities=19% Similarity=0.169 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeC
Q 008748 134 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLG 209 (555)
Q Consensus 134 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d 209 (555)
...+.+.+.+.. .+..+|||||||+|.++..|++. .|+++|+++.++..+..+. ...+ .++.+..+|
T Consensus 15 ~i~~~i~~~~~~--------~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~D 85 (285)
T 1zq9_A 15 LIINSIIDKAAL--------RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRV-QGTPVASKLQVLVGD 85 (285)
T ss_dssp HHHHHHHHHTCC--------CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHH-TTSTTGGGEEEEESC
T ss_pred HHHHHHHHhcCC--------CCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHH-HhcCCCCceEEEEcc
Confidence 345555555543 23468999999999999999863 7889999888775555332 2222 368899999
Q ss_pred CCCCCCCCCCccEEEecccccccccchH-HHH--------------HHH--HhhcCCCcEEE
Q 008748 210 TKRLPYPSRSFELAHCSRCRIDWLQRDG-ILL--------------LEL--DRLLRPGGYFV 254 (555)
Q Consensus 210 ~~~Lp~~d~sFDlVv~s~~~l~~~~d~~-~~L--------------~el--~RvLkPGG~lv 254 (555)
+..++++ +||+|+++. ..++..+.- .++ +|+ +++|+|||.++
T Consensus 86 ~~~~~~~--~fD~vv~nl-py~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 86 VLKTDLP--FFDTCVANL-PYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp TTTSCCC--CCSEEEEEC-CGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred eecccch--hhcEEEEec-CcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 9888776 799999754 344433221 122 344 36999999874
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.1e-07 Score=100.45 Aligned_cols=129 Identities=14% Similarity=0.153 Sum_probs=88.1
Q ss_pred HHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEe
Q 008748 134 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVL 208 (555)
Q Consensus 134 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~ 208 (555)
...+.+.+.+.. ....+|||+|||+|.++..+++ ..++|+|+++.++..+ .++.+..+
T Consensus 26 ~l~~~~~~~~~~--------~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~ 88 (421)
T 2ih2_A 26 EVVDFMVSLAEA--------PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILA 88 (421)
T ss_dssp HHHHHHHHHCCC--------CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEES
T ss_pred HHHHHHHHhhcc--------CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeC
Confidence 345556665542 1235899999999999999885 3688999988776433 46788889
Q ss_pred CCCCCCCCCCCccEEEeccccc--cc-------c-cc------------------hHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 209 GTKRLPYPSRSFELAHCSRCRI--DW-------L-QR------------------DGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 209 d~~~Lp~~d~sFDlVv~s~~~l--~~-------~-~d------------------~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
|+...+. .++||+|+++--.. .. . .+ ...++..+.++|+|||.++++.|..
T Consensus 89 D~~~~~~-~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~ 167 (421)
T 2ih2_A 89 DFLLWEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 167 (421)
T ss_dssp CGGGCCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred ChhhcCc-cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence 9776653 46899999852111 00 1 11 1256899999999999999999875
Q ss_pred CCCChhhHHHHHHHHHHHHhcCcE
Q 008748 261 YAHDPENRRIWNAMYDLLKSMCWK 284 (555)
Q Consensus 261 ~~~~~e~~~~~~~l~~l~~~~gw~ 284 (555)
+..... ...+.+.+.+.++.
T Consensus 168 ~l~~~~----~~~lr~~l~~~~~~ 187 (421)
T 2ih2_A 168 WLVLED----FALLREFLAREGKT 187 (421)
T ss_dssp GGTCGG----GHHHHHHHHHHSEE
T ss_pred HhcCcc----HHHHHHHHHhcCCe
Confidence 433222 34567777777773
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.5e-08 Score=97.93 Aligned_cols=97 Identities=11% Similarity=0.067 Sum_probs=72.5
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCC-C-C-----CCCCcc
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-Y-----PSRSFE 221 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~L-p-~-----~d~sFD 221 (555)
+++|||||||+|..+..++. ..++++|+++..+..+..++. +.+. .+.+..+|+... + + ++++||
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 149 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIR-KAGVEHKINFIESDAMLALDNLLQGQESEGSYD 149 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHH-HTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence 35899999999999998874 368899999888766664443 3444 478888886432 2 2 257899
Q ss_pred EEEecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 222 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 222 lVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
+|++.. ...+...++.++.++|+|||++++..
T Consensus 150 ~I~~d~----~~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 150 FGFVDA----DKPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEECS----CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECC----chHHHHHHHHHHHHhcCCCeEEEEec
Confidence 999654 23345678999999999999999864
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=5e-08 Score=99.39 Aligned_cols=111 Identities=13% Similarity=0.038 Sum_probs=76.0
Q ss_pred CCEEEEECC------CCcH-HHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEE-EEeCCCCCCCCCCCccEEEe
Q 008748 156 IRNVLDVGC------GVAS-FGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTL-GVLGTKRLPYPSRSFELAHC 225 (555)
Q Consensus 156 ~~~VLDIGC------GtG~-~a~~La~--~~V~~vdis~~dls~a~i~~A~~rg~~v~~-~~~d~~~Lp~~d~sFDlVv~ 225 (555)
..+|||+|| |+|. .++.+.. ..|+++|+++. + .++.+ .++|+..++++ ++||+|+|
T Consensus 64 g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-v------------~~v~~~i~gD~~~~~~~-~~fD~Vvs 129 (290)
T 2xyq_A 64 NMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-V------------SDADSTLIGDCATVHTA-NKWDLIIS 129 (290)
T ss_dssp TCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-B------------CSSSEEEESCGGGCCCS-SCEEEEEE
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-C------------CCCEEEEECccccCCcc-CcccEEEE
Confidence 468999999 4465 2222222 36899999886 1 25677 89999888765 68999997
Q ss_pred cccccccc-----------cchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 226 SRCRIDWL-----------QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 226 s~~~l~~~-----------~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
.. ..++. .....+++++.|+|||||.|++....... ..++..++++.||..+...
T Consensus 130 n~-~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~--------~~~l~~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 130 DM-YDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW--------NADLYKLMGHFSWWTAFVT 195 (290)
T ss_dssp CC-CCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC--------CHHHHHHHTTEEEEEEEEE
T ss_pred cC-CccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCC--------HHHHHHHHHHcCCcEEEEE
Confidence 53 22211 11246899999999999999997644311 2367778888888765443
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.55 E-value=5.7e-08 Score=104.85 Aligned_cols=127 Identities=13% Similarity=0.026 Sum_probs=86.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC-CCCCCccEEEecc--
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-YPSRSFELAHCSR-- 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp-~~d~sFDlVv~s~-- 227 (555)
+.+|||+|||+|..+..|++. .|+++|+++..+..+..+..+....++.+...|...++ ..+++||+|++.-
T Consensus 106 g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~DaPC 185 (456)
T 3m4x_A 106 GEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPC 185 (456)
T ss_dssp TCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEECCC
T ss_pred CCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEECCCC
Confidence 468999999999999888752 58899999988866665444333335777778876654 2347899999621
Q ss_pred --c-ccccccc----------------hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEE
Q 008748 228 --C-RIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 228 --~-~l~~~~d----------------~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~ 287 (555)
. .+...++ ...+|.++.++|||||+|++++-.... .+. -..+..++++.+|+++.
T Consensus 186 Sg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~--eEn---e~vv~~~l~~~~~~l~~ 259 (456)
T 3m4x_A 186 SGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP--EEN---EEIISWLVENYPVTIEE 259 (456)
T ss_dssp CCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG--GGT---HHHHHHHHHHSSEEEEC
T ss_pred CCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc--ccC---HHHHHHHHHhCCCEEEe
Confidence 1 1111111 125799999999999999998755321 222 23566778888876653
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.9e-07 Score=93.81 Aligned_cols=87 Identities=15% Similarity=0.222 Sum_probs=59.0
Q ss_pred HHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC
Q 008748 135 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR 212 (555)
Q Consensus 135 y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~ 212 (555)
..+.+.+.+.. ....+|||||||+|.++..|++. .|+++|+++.++..+..+.......++.+..+|+..
T Consensus 30 i~~~i~~~~~~--------~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~ 101 (299)
T 2h1r_A 30 ILDKIIYAAKI--------KSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIK 101 (299)
T ss_dssp HHHHHHHHHCC--------CTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCS
T ss_pred HHHHHHHhcCC--------CCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhh
Confidence 44555555542 23468999999999999999974 689999999888666644432222468889999888
Q ss_pred CCCCCCCccEEEeccccccc
Q 008748 213 LPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 213 Lp~~d~sFDlVv~s~~~l~~ 232 (555)
++++ +||+|+++. ..++
T Consensus 102 ~~~~--~~D~Vv~n~-py~~ 118 (299)
T 2h1r_A 102 TVFP--KFDVCTANI-PYKI 118 (299)
T ss_dssp SCCC--CCSEEEEEC-CGGG
T ss_pred CCcc--cCCEEEEcC-Cccc
Confidence 7764 799999754 3444
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1e-06 Score=94.28 Aligned_cols=96 Identities=16% Similarity=0.220 Sum_probs=70.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
..+|||+|||+|.++..|++. .|+++|+++.++..+..+.. ..+..+.+..+|+..+... +||+|++... ..
T Consensus 291 ~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~-~ngl~v~~~~~d~~~~~~~--~fD~Vv~dPP---r~ 364 (425)
T 2jjq_A 291 GEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVE-INNVDAEFEVASDREVSVK--GFDTVIVDPP---RA 364 (425)
T ss_dssp SSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-HHTCCEEEEECCTTTCCCT--TCSEEEECCC---TT
T ss_pred CCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH-HcCCcEEEEECChHHcCcc--CCCEEEEcCC---cc
Confidence 358999999999999999874 68999999998877775443 3444488999998776432 8999997532 11
Q ss_pred cchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 234 QRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 234 ~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
.-...++..+. .|+|||.++++..
T Consensus 365 g~~~~~~~~l~-~l~p~givyvsc~ 388 (425)
T 2jjq_A 365 GLHPRLVKRLN-REKPGVIVYVSCN 388 (425)
T ss_dssp CSCHHHHHHHH-HHCCSEEEEEESC
T ss_pred chHHHHHHHHH-hcCCCcEEEEECC
Confidence 11233555554 5999999999763
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.38 E-value=3.7e-09 Score=104.35 Aligned_cols=100 Identities=12% Similarity=0.061 Sum_probs=68.1
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCC-CCccEEEeccc----
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPS-RSFELAHCSRC---- 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d-~sFDlVv~s~~---- 228 (555)
..+|||||||+|.++..|++. .++++|+++.++..+..+.. ...++.+..+|+..+++++ ++| .|+++..
T Consensus 30 ~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py~~~ 106 (245)
T 1yub_A 30 TDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPNKQRY-KIVGNIPYHLS 106 (245)
T ss_dssp SEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCCSSEE-EEEEECCSSSC
T ss_pred CCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcccCCCc-EEEEeCCcccc
Confidence 358999999999999998863 68899999887754432221 2345788899999888774 678 6665420
Q ss_pred ------ccccccchHHHH----HHHHhhcCCCcEEEEEcC
Q 008748 229 ------RIDWLQRDGILL----LELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 229 ------~l~~~~d~~~~L----~el~RvLkPGG~lvis~P 258 (555)
.+.+......++ +.+.|+|+|||.+++..+
T Consensus 107 ~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 107 TQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp HHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred HHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 011111222334 668999999998887554
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.36 E-value=8.4e-07 Score=95.24 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc-----------------CCCccccCChhhhhHHHHHHH
Q 008748 134 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----------------HDIIAMSLAPNDVHENQIQFA 196 (555)
Q Consensus 134 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-----------------~~V~~vdis~~dls~a~i~~A 196 (555)
...+.+.+++.. ....+|||.|||+|.++..+++ ..+.|+|+++.++..+..+..
T Consensus 158 ~v~~~mv~~l~~--------~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~ 229 (445)
T 2okc_A 158 PLIQAMVDCINP--------QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 229 (445)
T ss_dssp HHHHHHHHHHCC--------CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--------CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH
Confidence 345556666542 2235899999999998877653 368899998887766665544
Q ss_pred HHcCC---CeEEEEeCCCCCCCCCCCccEEEecccccccccc-----------------hHHHHHHHHhhcCCCcEEEEE
Q 008748 197 LERGI---PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR-----------------DGILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 197 ~~rg~---~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d-----------------~~~~L~el~RvLkPGG~lvis 256 (555)
. .+. ...+..+|+...+.. .+||+|+++-. +..... ...++..+.++|+|||+++++
T Consensus 230 l-~g~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPP-f~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V 306 (445)
T 2okc_A 230 L-HGIGTDRSPIVCEDSLEKEPS-TLVDVILANPP-FGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVV 306 (445)
T ss_dssp H-TTCCSSCCSEEECCTTTSCCS-SCEEEEEECCC-SSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred H-hCCCcCCCCEeeCCCCCCccc-CCcCEEEECCC-CCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEE
Confidence 3 344 567888887766654 48999998642 221110 136899999999999999999
Q ss_pred cCCC
Q 008748 257 SPEA 260 (555)
Q Consensus 257 ~P~~ 260 (555)
.|..
T Consensus 307 ~p~~ 310 (445)
T 2okc_A 307 LPDN 310 (445)
T ss_dssp EEHH
T ss_pred ECCc
Confidence 8763
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.8e-06 Score=90.80 Aligned_cols=103 Identities=18% Similarity=0.275 Sum_probs=66.1
Q ss_pred CCEEEEECCCCcHHHHHHhcC-------------------CCccccCChhhhhHHHHHHHHH------------cCCCeE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-------------------DIIAMSLAPNDVHENQIQFALE------------RGIPST 204 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-------------------~V~~vdis~~dls~a~i~~A~~------------rg~~v~ 204 (555)
..+|+|+|||+|..+..+.+. .|...|+...|...-....... .+.+..
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 468999999999888777421 2334466666653332221110 000111
Q ss_pred E--EEe-CCCCCCCCCCCccEEEecccccccccc--------------------------------------hHHHHHHH
Q 008748 205 L--GVL-GTKRLPYPSRSFELAHCSRCRIDWLQR--------------------------------------DGILLLEL 243 (555)
Q Consensus 205 ~--~~~-d~~~Lp~~d~sFDlVv~s~~~l~~~~d--------------------------------------~~~~L~el 243 (555)
| .+. +...-.||+++||+|+|+. ++||..+ ...+|+..
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~-aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAF-SLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEES-CTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecc-eeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222 2333458899999999888 6999862 23368889
Q ss_pred HhhcCCCcEEEEEcCC
Q 008748 244 DRLLRPGGYFVYSSPE 259 (555)
Q Consensus 244 ~RvLkPGG~lvis~P~ 259 (555)
++.|+|||.++++...
T Consensus 212 a~eL~pGG~mvl~~~g 227 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCLG 227 (374)
T ss_dssp HHHEEEEEEEEEEEEE
T ss_pred HHHhCCCCEEEEEEec
Confidence 9999999999998754
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.4e-06 Score=88.89 Aligned_cols=84 Identities=7% Similarity=-0.008 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCC
Q 008748 134 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK 211 (555)
Q Consensus 134 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~ 211 (555)
...+.+.+.+.. .+..+|||||||+|.++..|++. .|+++|+++.++..+..+.. ...++.+..+|+.
T Consensus 37 ~i~~~Iv~~l~~--------~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l 106 (295)
T 3gru_A 37 NFVNKAVESANL--------TKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDAL 106 (295)
T ss_dssp HHHHHHHHHTTC--------CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTT
T ss_pred HHHHHHHHhcCC--------CCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchh
Confidence 345556665543 23468999999999999999863 79999999998876665443 3457899999999
Q ss_pred CCCCCCCCccEEEecc
Q 008748 212 RLPYPSRSFELAHCSR 227 (555)
Q Consensus 212 ~Lp~~d~sFDlVv~s~ 227 (555)
.+++++.+||.|+++.
T Consensus 107 ~~~~~~~~fD~Iv~Nl 122 (295)
T 3gru_A 107 KVDLNKLDFNKVVANL 122 (295)
T ss_dssp TSCGGGSCCSEEEEEC
T ss_pred hCCcccCCccEEEEeC
Confidence 9998888899999653
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.28 E-value=2.8e-07 Score=91.11 Aligned_cols=68 Identities=12% Similarity=0.194 Sum_probs=49.6
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCC-CCccEEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPS-RSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d-~sFDlVv~s 226 (555)
..+|||||||+|.++..|+++ .++++|+++.++..+..+.. ...++.+..+|+..+++++ ..| .|+++
T Consensus 31 ~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~~~~~~-~vv~n 101 (244)
T 1qam_A 31 HDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLV--DHDNFQVLNKDILQFKFPKNQSY-KIFGN 101 (244)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTT--TCCSEEEECCCGGGCCCCSSCCC-EEEEE
T ss_pred CCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhc--cCCCeEEEEChHHhCCcccCCCe-EEEEe
Confidence 468999999999999999864 68888888877654443221 1246899999999988874 445 34443
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.23 E-value=4.1e-06 Score=87.68 Aligned_cols=116 Identities=16% Similarity=0.181 Sum_probs=77.5
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC-CCeEEEEeCCCCCC--CCC--------------
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLP--YPS-------------- 217 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~d~~~Lp--~~d-------------- 217 (555)
.+|||+|||+|.++..|+.. .|+++|+++.++..+..+.. ..+ .++.+..+|+..+. +..
T Consensus 215 ~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~-~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~ 293 (369)
T 3bt7_A 215 GDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIA-ANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 293 (369)
T ss_dssp SEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHH-HTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGG
T ss_pred CEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCCceEEEECCHHHHHHHHhhcccccccccccccc
Confidence 57999999999999999874 69999999999877775543 344 36888888875541 111
Q ss_pred CCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEe
Q 008748 218 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 218 ~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~ 289 (555)
.+||+|++.-. . ..+..++.+.|+++|.+++++-.. . ..-+++..+.+ +|.+....
T Consensus 294 ~~fD~Vv~dPP---r----~g~~~~~~~~l~~~g~ivyvsc~p-----~--t~ard~~~l~~--~y~~~~~~ 349 (369)
T 3bt7_A 294 YQCETIFVDPP---R----SGLDSETEKMVQAYPRILYISCNP-----E--TLCKNLETLSQ--THKVERLA 349 (369)
T ss_dssp CCEEEEEECCC---T----TCCCHHHHHHHTTSSEEEEEESCH-----H--HHHHHHHHHHH--HEEEEEEE
T ss_pred CCCCEEEECcC---c----cccHHHHHHHHhCCCEEEEEECCH-----H--HHHHHHHHHhh--CcEEEEEE
Confidence 37999985421 1 113556777888999988876442 1 12234444443 57666444
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=6.7e-06 Score=82.59 Aligned_cols=101 Identities=17% Similarity=0.200 Sum_probs=63.6
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
..+|||+|||+|.++..++.. .+.++++.. |+....+.. ...+.++.....+++...++.+.||+|+|.. +.+
T Consensus 75 ~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGv-Dl~~~pi~~-~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~-apn 151 (277)
T 3evf_A 75 EGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGR-DGHEKPMNV-QSLGWNIITFKDKTDIHRLEPVKCDTLLCDI-GES 151 (277)
T ss_dssp CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC-TTCCCCCCC-CBTTGGGEEEECSCCTTTSCCCCCSEEEECC-CCC
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCcceeEEEec-cCccccccc-CcCCCCeEEEeccceehhcCCCCccEEEecC-ccC
Confidence 358999999999999988754 344555542 221100000 0112244555566555667778999999865 333
Q ss_pred ----cccchH--HHHHHHHhhcCCC-cEEEEEcCC
Q 008748 232 ----WLQRDG--ILLLELDRLLRPG-GYFVYSSPE 259 (555)
Q Consensus 232 ----~~~d~~--~~L~el~RvLkPG-G~lvis~P~ 259 (555)
+.+... .+|..+.++|+|| |.|++..-.
T Consensus 152 sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 152 SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 433332 2578889999999 999996644
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.13 E-value=8.3e-06 Score=86.36 Aligned_cols=102 Identities=13% Similarity=0.074 Sum_probs=72.3
Q ss_pred CCEEEEECCCCcHHHHHHhc--C----------------------------------------CCccccCChhhhhHHHH
Q 008748 156 IRNVLDVGCGVASFGAYLLS--H----------------------------------------DIIAMSLAPNDVHENQI 193 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~--~----------------------------------------~V~~vdis~~dls~a~i 193 (555)
...|||.+||+|.++..++. . .|+++|+++.++..+..
T Consensus 202 ~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~ 281 (393)
T 3k0b_A 202 DRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQ 281 (393)
T ss_dssp TSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHH
Confidence 35799999999999876653 1 38899999988877775
Q ss_pred HHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecccccccc---cchHHHHHHHHhhcCC--CcEEEEEcCC
Q 008748 194 QFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL---QRDGILLLELDRLLRP--GGYFVYSSPE 259 (555)
Q Consensus 194 ~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~---~d~~~~L~el~RvLkP--GG~lvis~P~ 259 (555)
+.. ..+. .+.+.++|+..++.+ .+||+|+++--..... .+...+..++.++||+ ||.+++.++.
T Consensus 282 Na~-~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 352 (393)
T 3k0b_A 282 NAV-EAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSY 352 (393)
T ss_dssp HHH-HTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECC
T ss_pred HHH-HcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 443 4444 489999999888876 4899999873211111 2234466666677766 8888887765
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.13 E-value=7.1e-06 Score=86.62 Aligned_cols=103 Identities=13% Similarity=0.076 Sum_probs=74.3
Q ss_pred CCEEEEECCCCcHHHHHHhc------------------------------------------CCCccccCChhhhhHHHH
Q 008748 156 IRNVLDVGCGVASFGAYLLS------------------------------------------HDIIAMSLAPNDVHENQI 193 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~------------------------------------------~~V~~vdis~~dls~a~i 193 (555)
..+|||.|||+|.++..++. ..|+|+|+++.++..+..
T Consensus 196 ~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~ 275 (385)
T 3ldu_A 196 GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARE 275 (385)
T ss_dssp TSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHH
Confidence 46899999999998877753 247899999988877775
Q ss_pred HHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecccccccc---cchHHHHHHHHhhcCC--CcEEEEEcCCC
Q 008748 194 QFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL---QRDGILLLELDRLLRP--GGYFVYSSPEA 260 (555)
Q Consensus 194 ~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~---~d~~~~L~el~RvLkP--GG~lvis~P~~ 260 (555)
+.. ..+. .+.+.++|+.+++.+ .+||+|+++-...... .+...+.+++.++||+ ||.+++.++..
T Consensus 276 Na~-~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 347 (385)
T 3ldu_A 276 NAE-IAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYE 347 (385)
T ss_dssp HHH-HHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESCT
T ss_pred HHH-HcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECCH
Confidence 543 3444 588999999888765 5899999864322111 2334567777778877 88888877653
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.10 E-value=5.4e-06 Score=78.68 Aligned_cols=114 Identities=17% Similarity=0.142 Sum_probs=82.4
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhccccchhcccccCC---CCCC-Cccchhhccccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWCESF---STYP-RTYDLLHAWKVFSEIE 475 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl~g~~~~~ce~~---~typ-rtydl~h~~~~~s~~~ 475 (555)
.+|+|++||.|.++.+|..... +|+-++-. ..+...-+++.+...+.-.+.+ +..+ .+||+|.+.++|. .
T Consensus 54 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~- 128 (227)
T 3e8s_A 54 ERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-H- 128 (227)
T ss_dssp SEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-S-
T ss_pred CEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-h-
Confidence 7899999999999999987743 56666643 5666666665443332211222 2233 4599999988877 2
Q ss_pred cCCCChhhhhhhhcccccCCceEEEecc--------------------------------hhHHHHHHHHHhhcCccce
Q 008748 476 ERGCSFEDLLIEMDRMLRPEGFVIIRDK--------------------------------SSIINYIRKFITALKWDGW 522 (555)
Q Consensus 476 ~~~c~~~~~~~e~drilrp~g~~i~rd~--------------------------------~~~~~~~~~~~~~~~w~~~ 522 (555)
.+...+|-++-|+|+|||.+++.+. ....+++++++..-.+++.
T Consensus 129 ---~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 204 (227)
T 3e8s_A 129 ---QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLV 204 (227)
T ss_dssp ---SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEE
T ss_pred ---hhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEE
Confidence 3578999999999999999999653 0157889999999999873
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.3e-05 Score=84.43 Aligned_cols=104 Identities=20% Similarity=0.164 Sum_probs=66.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC---------------------CCccccCChhhhhHHH------HHHH-HHcC--CCeEE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---------------------DIIAMSLAPNDVHENQ------IQFA-LERG--IPSTL 205 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---------------------~V~~vdis~~dls~a~------i~~A-~~rg--~~v~~ 205 (555)
..+|+|+||++|..+..+.+. .|...|+...|...-. .+.. ...+ .+..|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 468999999999888766542 1223455555542221 1111 2222 23455
Q ss_pred EEeC---CCCCCCCCCCccEEEecccccccccchHH---------------------------------------HHHHH
Q 008748 206 GVLG---TKRLPYPSRSFELAHCSRCRIDWLQRDGI---------------------------------------LLLEL 243 (555)
Q Consensus 206 ~~~d---~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~---------------------------------------~L~el 243 (555)
..+. ...-.||+++||+|+|+. ++||..+... +|+..
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~-aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCY-CLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEES-CTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecc-eeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544 334568999999999888 6999854321 25555
Q ss_pred HhhcCCCcEEEEEcCCC
Q 008748 244 DRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 244 ~RvLkPGG~lvis~P~~ 260 (555)
.+.|+|||.++++....
T Consensus 212 a~eL~pGG~mvl~~~gr 228 (384)
T 2efj_A 212 SEELISRGRMLLTFICK 228 (384)
T ss_dssp HHHEEEEEEEEEEEECC
T ss_pred HHHhccCCeEEEEEecC
Confidence 89999999999987654
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.8e-05 Score=83.47 Aligned_cols=103 Identities=14% Similarity=0.067 Sum_probs=73.9
Q ss_pred CCEEEEECCCCcHHHHHHhc--C----------------------------------------CCccccCChhhhhHHHH
Q 008748 156 IRNVLDVGCGVASFGAYLLS--H----------------------------------------DIIAMSLAPNDVHENQI 193 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~--~----------------------------------------~V~~vdis~~dls~a~i 193 (555)
...|||.+||+|.++..++. . .|+|+|+++.++..+..
T Consensus 195 ~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~ 274 (384)
T 3ldg_A 195 DKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARK 274 (384)
T ss_dssp TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred CCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHH
Confidence 35799999999998877663 1 38899999988877764
Q ss_pred HHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecccc---cccccchHHHHHHHHhhcCC--CcEEEEEcCCC
Q 008748 194 QFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR---IDWLQRDGILLLELDRLLRP--GGYFVYSSPEA 260 (555)
Q Consensus 194 ~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~---l~~~~d~~~~L~el~RvLkP--GG~lvis~P~~ 260 (555)
+. ...+. .+.+.++|+..++.+ .+||+|+++--. +.-..+...+..++.+.||+ ||.+++.++..
T Consensus 275 Na-~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 346 (384)
T 3ldg_A 275 NA-REVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTNDT 346 (384)
T ss_dssp HH-HHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESCT
T ss_pred HH-HHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCH
Confidence 44 34444 489999999888876 489999986311 11112335577777778876 99998888753
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.1e-05 Score=80.48 Aligned_cols=82 Identities=11% Similarity=0.177 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCC
Q 008748 134 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK 211 (555)
Q Consensus 134 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~ 211 (555)
...+.+.+.+.. .+..+|||||||+|.++..|+++ .|+++|+++.++..+..+... ..++.+..+|+.
T Consensus 16 ~i~~~iv~~~~~--------~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~ 85 (255)
T 3tqs_A 16 FVLQKIVSAIHP--------QKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDAL 85 (255)
T ss_dssp HHHHHHHHHHCC--------CTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTT
T ss_pred HHHHHHHHhcCC--------CCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchH
Confidence 345556666553 23468999999999999999975 688999988877655533321 457899999998
Q ss_pred CCCCCC----CCccEEEec
Q 008748 212 RLPYPS----RSFELAHCS 226 (555)
Q Consensus 212 ~Lp~~d----~sFDlVv~s 226 (555)
.+++++ +.|| |+++
T Consensus 86 ~~~~~~~~~~~~~~-vv~N 103 (255)
T 3tqs_A 86 QFDFSSVKTDKPLR-VVGN 103 (255)
T ss_dssp TCCGGGSCCSSCEE-EEEE
T ss_pred hCCHHHhccCCCeE-EEec
Confidence 887643 4688 5543
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.2e-05 Score=82.40 Aligned_cols=102 Identities=14% Similarity=-0.000 Sum_probs=69.3
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcC-CCeEEEEeCCCCCCCCC---CCccEEEe-
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPS---RSFELAHC- 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~d~~~Lp~~d---~sFDlVv~- 225 (555)
..+|||+|||+|..+..|+. ..|+++|+++..+.....+. ...+ .++.+..+|+..++... ++||.|++
T Consensus 103 g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~-~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D 181 (309)
T 2b9e_A 103 GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL-ARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLD 181 (309)
T ss_dssp TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHH-HHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEEC
T ss_pred CCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCeEEEEeCChHhcCccccccCCCCEEEEc
Confidence 46899999999999988875 36899999998876666444 3334 36888889987765432 57999996
Q ss_pred ---cc-cccccc-----------cch-------HHHHHHHHhhcCCCcEEEEEcCC
Q 008748 226 ---SR-CRIDWL-----------QRD-------GILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 226 ---s~-~~l~~~-----------~d~-------~~~L~el~RvLkPGG~lvis~P~ 259 (555)
+. ..+... .+. ..+|..+.++|+ ||+++.++-.
T Consensus 182 ~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 182 PSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp CCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred CCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 11 111110 011 235777777887 9999987654
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.6e-05 Score=73.08 Aligned_cols=150 Identities=17% Similarity=0.164 Sum_probs=92.8
Q ss_pred hhHhHhHhhHHHHHHHHHH------------hhhhccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCCCchhH
Q 008748 371 EEFHEDIGIWQVRVVDYWK------------QMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKI 438 (555)
Q Consensus 371 ~~~~~d~~~w~~~v~~y~~------------~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~~~l~~ 438 (555)
+.|..+...|......|.. .+........-.+|+|++||.|.++..|. . +|+-++.... .+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-~-----~v~~~D~s~~-~~ 99 (215)
T 2zfu_A 27 RLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASSIR-N-----PVHCFDLASL-DP 99 (215)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-S-----CEEEEESSCS-ST
T ss_pred HHHHHhHHHHHHHHHHHHhhhcccchhHHHHHHHHHhccCCCCeEEEECCcCCHHHHHhh-c-----cEEEEeCCCC-Cc
Confidence 4456666677665555533 11111111234579999999999999884 2 3333332211 11
Q ss_pred HhhccccchhcccccCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecchh---HHHHHHHHHh
Q 008748 439 IYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS---IINYIRKFIT 515 (555)
Q Consensus 439 i~~rgl~g~~~~~ce~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~---~~~~~~~~~~ 515 (555)
-+. -.|. +.++.-+.+||+|.+..++. . -+...+|-|+-|+|+|||.+++.+-.. ..+++.+++.
T Consensus 100 ~~~------~~d~-~~~~~~~~~fD~v~~~~~l~-~----~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~ 167 (215)
T 2zfu_A 100 RVT------VCDM-AQVPLEDESVDVAVFCLSLM-G----TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVT 167 (215)
T ss_dssp TEE------ESCT-TSCSCCTTCEEEEEEESCCC-S----SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHH
T ss_pred eEE------Eecc-ccCCCCCCCEeEEEEehhcc-c----cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHH
Confidence 111 1122 22333356899999988874 2 247899999999999999999976544 4678888888
Q ss_pred hcCccceecccccccccCCCCCceEEEEEec
Q 008748 516 ALKWDGWLSEVEPRIDALSSSEERVLIAKKK 546 (555)
Q Consensus 516 ~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k~ 546 (555)
...++... .+ .....-.+++++|.
T Consensus 168 ~~Gf~~~~--~~-----~~~~~~~~~~~~k~ 191 (215)
T 2zfu_A 168 KLGFKIVS--KD-----LTNSHFFLFDFQKT 191 (215)
T ss_dssp HTTEEEEE--EE-----CCSTTCEEEEEEEC
T ss_pred HCCCEEEE--Ee-----cCCCeEEEEEEEec
Confidence 88888632 11 11234578888886
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.98 E-value=5.9e-06 Score=91.05 Aligned_cols=116 Identities=16% Similarity=0.135 Sum_probs=77.7
Q ss_pred HHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc----------------------CCCccccCChhhhhHHH
Q 008748 135 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----------------------HDIIAMSLAPNDVHENQ 192 (555)
Q Consensus 135 y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~----------------------~~V~~vdis~~dls~a~ 192 (555)
..+.+.+++.. ....+|||.+||+|.|+..+++ ..+.|+|+++.++..+.
T Consensus 157 iv~~mv~~l~p--------~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~ 228 (541)
T 2ar0_A 157 LIKTIIHLLKP--------QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL 228 (541)
T ss_dssp HHHHHHHHHCC--------CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhcc--------CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHH
Confidence 44555666542 2235899999999998877653 25778888887776665
Q ss_pred HHHHHHcCCC------eEEEEeCCCCCC-CCCCCccEEEecccccccccc--------------hHHHHHHHHhhcCCCc
Q 008748 193 IQFALERGIP------STLGVLGTKRLP-YPSRSFELAHCSRCRIDWLQR--------------DGILLLELDRLLRPGG 251 (555)
Q Consensus 193 i~~A~~rg~~------v~~~~~d~~~Lp-~~d~sFDlVv~s~~~l~~~~d--------------~~~~L~el~RvLkPGG 251 (555)
.+... .+.. ..+..+|+...+ ...+.||+|+++-. +..... ...++..+.+.|+|||
T Consensus 229 ~nl~l-~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPP-f~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gG 306 (541)
T 2ar0_A 229 MNCLL-HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPP-FGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGG 306 (541)
T ss_dssp HHHHT-TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCC-CTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred HHHHH-hCCCccccccCCeEeCCCcccccccccCCeEEEECCC-cccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCC
Confidence 44433 2333 567888865443 34568999997532 111111 1358999999999999
Q ss_pred EEEEEcCCC
Q 008748 252 YFVYSSPEA 260 (555)
Q Consensus 252 ~lvis~P~~ 260 (555)
+++++.|..
T Consensus 307 r~a~V~p~~ 315 (541)
T 2ar0_A 307 RAAVVVPDN 315 (541)
T ss_dssp EEEEEEEHH
T ss_pred EEEEEecCc
Confidence 999998864
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=1.2e-05 Score=81.11 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCC
Q 008748 134 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK 211 (555)
Q Consensus 134 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~ 211 (555)
...+.+.+.+.. .+. +|||||||+|.++..|++. .|+++|+++.++..+..+.. ..++.+..+|+.
T Consensus 34 ~i~~~Iv~~~~~--------~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~---~~~v~vi~~D~l 101 (271)
T 3fut_A 34 AHLRRIVEAARP--------FTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS---GLPVRLVFQDAL 101 (271)
T ss_dssp HHHHHHHHHHCC--------CCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT---TSSEEEEESCGG
T ss_pred HHHHHHHHhcCC--------CCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC---CCCEEEEECChh
Confidence 345556666553 234 7999999999999999875 78999999988865553332 357899999998
Q ss_pred CCCCCCC-CccEEEec
Q 008748 212 RLPYPSR-SFELAHCS 226 (555)
Q Consensus 212 ~Lp~~d~-sFDlVv~s 226 (555)
.+++++. .+|.|+++
T Consensus 102 ~~~~~~~~~~~~iv~N 117 (271)
T 3fut_A 102 LYPWEEVPQGSLLVAN 117 (271)
T ss_dssp GSCGGGSCTTEEEEEE
T ss_pred hCChhhccCccEEEec
Confidence 8887643 68888855
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=1e-05 Score=90.33 Aligned_cols=97 Identities=14% Similarity=0.126 Sum_probs=64.4
Q ss_pred CCCEEEEECCCCcHHHHHH---hcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEec
Q 008748 155 NIRNVLDVGCGVASFGAYL---LSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCS 226 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~L---a~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s 226 (555)
+...|||||||+|.+.... +.+ +|.+++-++......++..+..-+..++++.++++++..| +.+|+|||-
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSE 435 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSE 435 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECC
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEE
Confidence 3458999999999874333 222 5789998886543333222222245689999999998877 579999972
Q ss_pred ccccccc---cchHHHHHHHHhhcCCCcEEE
Q 008748 227 RCRIDWL---QRDGILLLELDRLLRPGGYFV 254 (555)
Q Consensus 227 ~~~l~~~---~d~~~~L~el~RvLkPGG~lv 254 (555)
- +.+. +.--.++....|.|||||.++
T Consensus 436 w--MG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 436 L--LGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp C--CBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred c--CcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 1 1111 111246777889999999876
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=97.90 E-value=8e-06 Score=79.39 Aligned_cols=122 Identities=11% Similarity=0.125 Sum_probs=80.6
Q ss_pred cCCCcceeEeeccCCcchhhhhccCCCceEEEecccCC-CCchhHHhhcc----ccc-hhcccccCCCCCCCccchhhcc
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG----LIG-TVHDWCESFSTYPRTYDLLHAW 468 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~-~~~l~~i~~rg----l~g-~~~~~ce~~~typrtydl~h~~ 468 (555)
+....-.+|+|++||.|.++..|...- .-+|+-++- +..+...-++- -+- +..|+. .++.-+.+||+|.+.
T Consensus 89 l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~ 165 (254)
T 1xtp_A 89 LPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGMPVGKFILASME-TATLPPNTYDLIVIQ 165 (254)
T ss_dssp STTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGG-GCCCCSSCEEEEEEE
T ss_pred hcccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHH-HCCCCCCCeEEEEEc
Confidence 333455689999999999998886532 124555553 24455444432 122 223433 344334799999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCceEEEecch----------------hHHHHHHHHHhhcCccc
Q 008748 469 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS----------------SIINYIRKFITALKWDG 521 (555)
Q Consensus 469 ~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~----------------~~~~~~~~~~~~~~w~~ 521 (555)
+++..+.. -....+|-++-|+|+|||.+++.+.. ...+++++++..-.++.
T Consensus 166 ~~l~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 232 (254)
T 1xtp_A 166 WTAIYLTD--ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRV 232 (254)
T ss_dssp SCGGGSCH--HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCE
T ss_pred chhhhCCH--HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEE
Confidence 98875421 13678999999999999999998731 12477888888878876
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=2.9e-05 Score=76.26 Aligned_cols=116 Identities=16% Similarity=0.209 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc--cccchhcccccC
Q 008748 378 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR--GLIGTVHDWCES 454 (555)
Q Consensus 378 ~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r--gl~g~~~~~ce~ 454 (555)
..|........+.+...+.. -..|+|++||.|.++..|...-. +|+-++-. ..+...-++ ++-=+-.|.. .
T Consensus 31 ~~~~~~~~~~~~~l~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~-~ 104 (263)
T 3pfg_A 31 KDYHREAADLAALVRRHSPK--AASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNPDAVLHHGDMR-D 104 (263)
T ss_dssp CCHHHHHHHHHHHHHHHCTT--CCEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCTTSEEEECCTT-T
T ss_pred CCHHHHHHHHHHHHHhhCCC--CCcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCEEEECChH-H
Confidence 34555555444444332322 36799999999999999987632 56666653 555555444 2211222332 3
Q ss_pred CCCCCCccchhhccc-cccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 455 FSTYPRTYDLLHAWK-VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 455 ~~typrtydl~h~~~-~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
++. +.+||+|.+.. +|..+.. .-....+|-++-|+|+|||.++|.
T Consensus 105 ~~~-~~~fD~v~~~~~~l~~~~~-~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 105 FSL-GRRFSAVTCMFSSIGHLAG-QAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp CCC-SCCEEEEEECTTGGGGSCH-HHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CCc-cCCcCEEEEcCchhhhcCC-HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 343 78999999987 7774421 113667899999999999999995
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=6.4e-06 Score=82.04 Aligned_cols=98 Identities=12% Similarity=0.222 Sum_probs=66.8
Q ss_pred ceeEeeccCCcchhhhhcc-CCCceEEEecccCCC-CchhHHhhc----cccchhcccccCCCCCCCccchhhccccccc
Q 008748 400 FRNVMDMNSNLGGFAAALK-DKDVWVMNVAPVRMS-ARLKIIYDR----GLIGTVHDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~-~~~~wvmnv~p~~~~-~~l~~i~~r----gl~g~~~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
-..|+|++||.|+++..|. ..+. +|+-++-. ..+...-++ |+..-..-.+..+..+|.+||+|.+.++|..
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~v~~~~~l~~ 141 (287)
T 1kpg_A 65 GMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEH 141 (287)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred cCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCeeEEEEeCchhh
Confidence 3579999999999998887 3343 56656543 555554443 4422111112222334589999999998875
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEec
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+.. -+...+|-|+-|+|+|||.+++.+
T Consensus 142 ~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 142 FGH--ERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp TCT--TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cCh--HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 432 247889999999999999999864
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=5.7e-06 Score=87.21 Aligned_cols=96 Identities=14% Similarity=0.079 Sum_probs=70.8
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHc--------------CCC-eEEEEeCCCCCCC-C
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER--------------GIP-STLGVLGTKRLPY-P 216 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~r--------------g~~-v~~~~~d~~~Lp~-~ 216 (555)
.+|||+|||+|.++..++.+ .|+++|+++..+..+..+..... +.. +.+..+|+..+.. .
T Consensus 49 ~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~ 128 (378)
T 2dul_A 49 KIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER 128 (378)
T ss_dssp SEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS
T ss_pred CEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhc
Confidence 58999999999999988753 58899999988877776655441 444 7888888654421 1
Q ss_pred CCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 217 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 217 d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
.+.||+|+..- + .....++..+.+.|++||+++++.
T Consensus 129 ~~~fD~I~lDP----~-~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 129 HRYFHFIDLDP----F-GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp TTCEEEEEECC----S-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCCCEEEeCC----C-CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 35799999431 1 123568999999999999988874
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=8.8e-06 Score=86.17 Aligned_cols=95 Identities=11% Similarity=0.092 Sum_probs=69.9
Q ss_pred CEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-C--eEEEEeCCCCC-C-CCCCCccEEEec
Q 008748 157 RNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-P--STLGVLGTKRL-P-YPSRSFELAHCS 226 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~-~--v~~~~~d~~~L-p-~~d~sFDlVv~s 226 (555)
.+|||++||+|.++..++. ..|+++|+++..+..+..+... .+. + +.+..+|+..+ . ...+.||+|++.
T Consensus 54 ~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~-Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lD 132 (392)
T 3axs_A 54 VKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKL-NNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLD 132 (392)
T ss_dssp EEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHH-TTCCGGGEEEECSCHHHHHHSCCSSCEEEEEEC
T ss_pred CEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH-hCCCCceEEEEeCCHHHHHHHhhCCCCcEEEEC
Confidence 5899999999999998886 2589999999888666655443 344 3 78888886432 1 113579999954
Q ss_pred ccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 227 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 227 ~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
- + ..+..++..+.+.|++||+++++.
T Consensus 133 P----~-g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 133 P----F-GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp C----S-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred C----C-cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 3 1 223568999999999999998865
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00011 Score=70.59 Aligned_cols=95 Identities=20% Similarity=0.292 Sum_probs=63.1
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cc-cchh-cccccCCCCCCCccchhhccc-cc
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GL-IGTV-HDWCESFSTYPRTYDLLHAWK-VF 471 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl-~g~~-~~~ce~~~typrtydl~h~~~-~~ 471 (555)
-.+|+|++||.|.++..|..... +|+-++.. ..+...-++ |+ +-+. .|.. .++ ++.+||+|.+.+ +|
T Consensus 38 ~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~~l 112 (246)
T 1y8c_A 38 FDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDIS-NLN-INRKFDLITCCLDST 112 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGG-GCC-CSCCEEEEEECTTGG
T ss_pred CCeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccc-cCC-ccCCceEEEEcCccc
Confidence 35799999999999999887532 45555543 444443332 22 1111 2222 232 458999999987 88
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEE
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVII 500 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~ 500 (555)
..+.. .=....+|-++-|+|+|||.+++
T Consensus 113 ~~~~~-~~~~~~~l~~~~~~L~pgG~l~~ 140 (246)
T 1y8c_A 113 NYIID-SDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GGCCS-HHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cccCC-HHHHHHHHHHHHHhcCCCcEEEE
Confidence 75411 01367899999999999999998
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=97.80 E-value=3.5e-05 Score=73.40 Aligned_cols=160 Identities=14% Similarity=0.132 Sum_probs=95.1
Q ss_pred hhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cc-------c
Q 008748 378 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GL-------I 445 (555)
Q Consensus 378 ~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl-------~ 445 (555)
.....+.+...+.+. ...-..|+|++||.|.++..|.+.- ...+|+-++-. ..+...-++ |+ +
T Consensus 12 ~~~~~~~~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v 86 (219)
T 3jwg_A 12 NLNQQRLGTVVAVLK----SVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRI 86 (219)
T ss_dssp CHHHHHHHHHHHHHH----HTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTE
T ss_pred cchHHHHHHHHHHHh----hcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcce
Confidence 344444444434332 2234589999999999999997642 11245555543 444443332 21 1
Q ss_pred c-hhcccccCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecchhH------------------
Q 008748 446 G-TVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSI------------------ 506 (555)
Q Consensus 446 g-~~~~~ce~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~~------------------ 506 (555)
- +..|. +..+.-+.+||+|-+..+|..+.. -.+..+|-++-|+|+|||.+++-...+.
T Consensus 87 ~~~~~d~-~~~~~~~~~fD~V~~~~~l~~~~~--~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T 3jwg_A 87 SLFQSSL-VYRDKRFSGYDAATVIEVIEHLDE--NRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHR 163 (219)
T ss_dssp EEEECCS-SSCCGGGTTCSEEEEESCGGGCCH--HHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCT
T ss_pred EEEeCcc-cccccccCCCCEEEEHHHHHhCCH--HHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCce
Confidence 1 22233 333333469999999999885532 1246889999999999998886543321
Q ss_pred ----HHHHH----HHHhhcCccceecccccccccCCCCCceEEEEEec
Q 008748 507 ----INYIR----KFITALKWDGWLSEVEPRIDALSSSEERVLIAKKK 546 (555)
Q Consensus 507 ----~~~~~----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k~ 546 (555)
.++++ .++..-.+++...-+-.. .+......+|-|++|+
T Consensus 164 ~~~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~-~~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 164 FEWTRKEFQTWAVKVAEKYGYSVRFLQIGEI-DDEFGSPTQMGVFTLG 210 (219)
T ss_dssp TSBCHHHHHHHHHHHHHHHTEEEEEEEESCC-CTTSCCSEEEEEEEEC
T ss_pred eeecHHHHHHHHHHHHHHCCcEEEEEecCCc-cccCCCCeEEEEEecc
Confidence 23344 777777787754322211 2223457889999986
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.78 E-value=1.4e-05 Score=83.67 Aligned_cols=104 Identities=17% Similarity=0.244 Sum_probs=66.6
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--------------------CCccccCChhhhhHHHHHHHHH-cCCCeEEEEe---CC
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--------------------DIIAMSLAPNDVHENQIQFALE-RGIPSTLGVL---GT 210 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--------------------~V~~vdis~~dls~a~i~~A~~-rg~~v~~~~~---d~ 210 (555)
..-+|+|+||++|..+..+.+. .|...|+...|..........- ...+..|..+ +.
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3457999999999776655432 2334466666654333211100 0002234333 24
Q ss_pred CCCCCCCCCccEEEecccccccccch---------------------------------HHHHHHHHhhcCCCcEEEEEc
Q 008748 211 KRLPYPSRSFELAHCSRCRIDWLQRD---------------------------------GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 211 ~~Lp~~d~sFDlVv~s~~~l~~~~d~---------------------------------~~~L~el~RvLkPGG~lvis~ 257 (555)
..-.||++++|+|+|+. ++||..+. ..+|+...+.|+|||.++++.
T Consensus 131 y~rlfp~~S~d~v~Ss~-aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSY-SLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSCCSCTTCBSCEEEES-CTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhccCCCCceEEEEehh-hhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 45668999999999888 69997542 124888899999999999987
Q ss_pred CC
Q 008748 258 PE 259 (555)
Q Consensus 258 P~ 259 (555)
..
T Consensus 210 ~g 211 (359)
T 1m6e_X 210 LG 211 (359)
T ss_dssp EE
T ss_pred ec
Confidence 54
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00011 Score=74.87 Aligned_cols=111 Identities=16% Similarity=0.151 Sum_probs=75.4
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHH-----HcCCCeEEEEeCCCCC-CCCCCCccEE
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFAL-----ERGIPSTLGVLGTKRL-PYPSRSFELA 223 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~-----~rg~~v~~~~~d~~~L-p~~d~sFDlV 223 (555)
.++++||=||.|.|..++.+++. .|+.+|+++.-+..+..-+.. -..+++.+..+|.... .-..++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 45679999999999999999874 577888888666544432221 1135789999996543 3456789999
Q ss_pred Eeccccccccc----chHHHHHHHHhhcCCCcEEEEEcCCCCCCCh
Q 008748 224 HCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYAHDP 265 (555)
Q Consensus 224 v~s~~~l~~~~----d~~~~L~el~RvLkPGG~lvis~P~~~~~~~ 265 (555)
+.-. .-.... ....+++.+.++|+|||.++.-....+....
T Consensus 162 i~D~-~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~ 206 (294)
T 3o4f_A 162 ISDC-TDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQE 206 (294)
T ss_dssp EESC-CCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCH
T ss_pred EEeC-CCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChH
Confidence 9532 111111 1145899999999999999986544443443
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=5.8e-05 Score=79.54 Aligned_cols=281 Identities=15% Similarity=0.151 Sum_probs=138.1
Q ss_pred CEEEEECCCCcHHHHHHh-cCCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc--
Q 008748 157 RNVLDVGCGVASFGAYLL-SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL-- 233 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La-~~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~-- 233 (555)
.+||.++-+.|.++..+. ..+++.++-+-.+ . +....++..... .. ....+...||+|+.- +.-.
T Consensus 47 ~~~l~~n~~~g~~~~~~~~~~~~~~~~~~~~~--~---~~l~~~~~~~~~--~~--~~~~~~~~~d~v~~~---~Pk~k~ 114 (381)
T 3dmg_A 47 ERALDLNPGVGWGSLPLEGRMAVERLETSRAA--F---RCLTASGLQARL--AL--PWEAAAGAYDLVVLA---LPAGRG 114 (381)
T ss_dssp SEEEESSCTTSTTTGGGBTTBEEEEEECBHHH--H---HHHHHTTCCCEE--CC--GGGSCTTCEEEEEEE---CCGGGC
T ss_pred CcEEEecCCCCccccccCCCCceEEEeCcHHH--H---HHHHHcCCCccc--cC--CccCCcCCCCEEEEE---CCcchh
Confidence 489999999998887776 3345544322211 1 112334555432 11 111234679998832 1110
Q ss_pred -cchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHH-hcCcEEEEEeeceEEeecCCCchhhhccCCCC
Q 008748 234 -QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLK-SMCWKIVSKKDQTVIWAKPISNSCYLKRVPGS 311 (555)
Q Consensus 234 -~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~-~~gw~vv~~~~~~~iw~KPl~~~c~~~r~~~~ 311 (555)
...+..|.++.+.|+|||.++++.... .-.+.+...++ ..++......+.. +.|........
T Consensus 115 ~~~~~~~l~~~~~~l~~g~~i~~~g~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~--------~r~~~~~~~~~ 178 (381)
T 3dmg_A 115 TAYVQASLVAAARALRMGGRLYLAGDKN--------KGFERYFKEARALLGYGVVVRREGP--------YRVALLEKEKE 178 (381)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEGG--------GTHHHHHHHHHHHHSCEEEEEEETT--------EEEEEEECCSC
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEccH--------HHHHHHHHHHHhhhccccccccccC--------cEEEEEEccCC
Confidence 123567899999999999999877442 12233333333 4466433333221 11222111111
Q ss_pred CCCCCCCCCCCCccccccccccccccccccccccCCCCCCCCCCCCCCCCCccccCC-ChhhHhHhHhhHHHHHHHHHHh
Q 008748 312 RPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGV-TTEEFHEDIGIWQVRVVDYWKQ 390 (555)
Q Consensus 312 ~p~lc~~~~~~~~~wy~~L~~Ci~~~~~~~~~~~~~~~~~~p~rl~~~~~~~~~~~~-~~~~~~~d~~~w~~~v~~y~~~ 390 (555)
.|. ....| ...+..+ .... -++...| |+ +.......++...+.+..+..
T Consensus 179 ~p~-------~~~~w-~~~~~~~---~g~~------------~~~~~~p------gvFs~~~~d~~t~~ll~~l~~~l~- 228 (381)
T 3dmg_A 179 APP-------LPSLW-RAFSARI---LGAE------------YTFHHLP------GVFSAGKVDPASLLLLEALQERLG- 228 (381)
T ss_dssp CCC-------CCCCC-EEEEEEE---TTEE------------EEEEECT------TCTTTTSCCHHHHHHHHHHHHHHC-
T ss_pred CCC-------Ccccc-ceeeEEe---cCce------------EEEEeCC------CceeCCCCCHHHHHHHHHHHHhhc-
Confidence 111 11123 1111111 0000 0111111 11 111122334444444433311
Q ss_pred hhhccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHh----hccc-cchhcccccCCCCCCCccch
Q 008748 391 MKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY----DRGL-IGTVHDWCESFSTYPRTYDL 464 (555)
Q Consensus 391 ~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~----~rgl-~g~~~~~ce~~~typrtydl 464 (555)
.....=.+|+|++||.|.++..|..... .|+-++.. ..+...- ..|+ +-+++.=++.+..=..+||+
T Consensus 229 ----~~~~~~~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~ 301 (381)
T 3dmg_A 229 ----PEGVRGRQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDI 301 (381)
T ss_dssp ----TTTTTTCEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEE
T ss_pred ----ccCCCCCEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEE
Confidence 0111234799999999999999876642 55555543 3333221 2232 22222222222221369999
Q ss_pred hhccccccccccC-CCChhhhhhhhcccccCCceEEEec
Q 008748 465 LHAWKVFSEIEER-GCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 465 ~h~~~~~s~~~~~-~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
|-++..|...... .-....++-++-|+|+|||.++|--
T Consensus 302 Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 302 IVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVS 340 (381)
T ss_dssp EEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 9998877631110 1124578889999999999999864
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=8.6e-06 Score=75.89 Aligned_cols=112 Identities=18% Similarity=0.296 Sum_probs=74.7
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHh----hccc--cc-hhcccccCCCCCCCccchhhcccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY----DRGL--IG-TVHDWCESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~----~rgl--~g-~~~~~ce~~~typrtydl~h~~~~~s 472 (555)
.+|+|++||.|.++..|..... +|+-++.. ..+...- +.|+ +- +..|..+ ++. +.+||+|.+.++|.
T Consensus 34 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~-~~~~D~v~~~~~l~ 108 (199)
T 2xvm_A 34 GKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNN-LTF-DRQYDFILSTVVLM 108 (199)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGG-CCC-CCCEEEEEEESCGG
T ss_pred CeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhh-CCC-CCCceEEEEcchhh
Confidence 4899999999999998876632 55555543 3343322 2333 22 2223333 344 78999999998887
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEEecch--------------hHHHHHHHHHhhcCccc
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS--------------SIINYIRKFITALKWDG 521 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~--------------~~~~~~~~~~~~~~w~~ 521 (555)
.+.. -....+|-++-|+|+|||.+++-+.. -..+++++++.. |++
T Consensus 109 ~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~ 167 (199)
T 2xvm_A 109 FLEA--KTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WER 167 (199)
T ss_dssp GSCG--GGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEE
T ss_pred hCCH--HHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeE
Confidence 4421 24678999999999999998764311 135677788777 876
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=97.75 E-value=1.4e-05 Score=75.85 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=80.8
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc-cccchhcccccCCCCCCCccchhhccccccccccCC
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR-GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERG 478 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r-gl~g~~~~~ce~~~typrtydl~h~~~~~s~~~~~~ 478 (555)
..|+|++||.|.++..|.+... +|+-++.. ..+...-++ ++--...|.. .++ .+.+||+|.+.++|..+..
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l~~~~~-- 117 (211)
T 3e23_A 45 AKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRLGRPVRTMLFH-QLD-AIDAYDAVWAHACLLHVPR-- 117 (211)
T ss_dssp CEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHTSCCEECCGG-GCC-CCSCEEEEEECSCGGGSCH--
T ss_pred CcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhcCCceEEeeec-cCC-CCCcEEEEEecCchhhcCH--
Confidence 4799999999999999987632 56666643 555555555 4332333433 334 5689999999998874431
Q ss_pred CChhhhhhhhcccccCCceEEEecch---------------hHHHHHHHHHhhcC-ccc
Q 008748 479 CSFEDLLIEMDRMLRPEGFVIIRDKS---------------SIINYIRKFITALK-WDG 521 (555)
Q Consensus 479 c~~~~~~~e~drilrp~g~~i~rd~~---------------~~~~~~~~~~~~~~-w~~ 521 (555)
-+...+|-|+-|+|+|||.+++.... -..+++++++..-. ++.
T Consensus 118 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~ 176 (211)
T 3e23_A 118 DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWAS 176 (211)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEE
Confidence 13678999999999999999986221 14678888888888 886
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.75 E-value=2.3e-05 Score=78.26 Aligned_cols=124 Identities=15% Similarity=0.104 Sum_probs=74.3
Q ss_pred CCCEEEEECCCCcHHHHHHhc----------------CCCccccCCh---hhhhHH----------HHHHHHH-------
Q 008748 155 NIRNVLDVGCGVASFGAYLLS----------------HDIIAMSLAP---NDVHEN----------QIQFALE------- 198 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~----------------~~V~~vdis~---~dls~a----------~i~~A~~------- 198 (555)
+..+|||||+|+|..+..+++ ..+++++..+ .++..+ ..+....
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 346899999999987666432 2567788776 333322 1111111
Q ss_pred --------cCCCeEEEEeCCCC-CCCCC----CCccEEEecccccccccc--hHHHHHHHHhhcCCCcEEEEEcCCCCCC
Q 008748 199 --------RGIPSTLGVLGTKR-LPYPS----RSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSPEAYAH 263 (555)
Q Consensus 199 --------rg~~v~~~~~d~~~-Lp~~d----~sFDlVv~s~~~l~~~~d--~~~~L~el~RvLkPGG~lvis~P~~~~~ 263 (555)
...++.+..+|+.. ++..+ ..||+|+.-...-.-.++ ...++.++.++|+|||.|+.-+..
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysaa---- 215 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSA---- 215 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCCB----
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeCC----
Confidence 01245677888544 44222 279999963211111111 256999999999999999863221
Q ss_pred ChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 264 DPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 264 ~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
..+.+.+...||.+.....
T Consensus 216 --------~~vrr~L~~aGF~v~~~~g 234 (257)
T 2qy6_A 216 --------GFVRRGLQEAGFTMQKRKG 234 (257)
T ss_dssp --------HHHHHHHHHHTEEEEEECC
T ss_pred --------HHHHHHHHHCCCEEEeCCC
Confidence 1456677888999775433
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00025 Score=74.50 Aligned_cols=96 Identities=10% Similarity=-0.025 Sum_probs=57.6
Q ss_pred CEEEEECCCCcHHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCC---eEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIP---STLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~~V~~vdis~~dls~a~i~~A~~rg~~---v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
.+||.|+.+.|.++..|+...++.+.=+-.. ..+..+.....+.. +.+. ...+.+ .+.||+|+..- -...
T Consensus 40 ~~~~~~~d~~gal~~~~~~~~~~~~~ds~~~-~~~~~~n~~~~~~~~~~~~~~-~~~~~~---~~~~~~v~~~l--pk~~ 112 (375)
T 4dcm_A 40 GPVLILNDAFGALSCALAEHKPYSIGDSYIS-ELATRENLRLNGIDESSVKFL-DSTADY---PQQPGVVLIKV--PKTL 112 (375)
T ss_dssp SCEEEECCSSSHHHHHTGGGCCEEEESCHHH-HHHHHHHHHHTTCCGGGSEEE-ETTSCC---CSSCSEEEEEC--CSCH
T ss_pred CCEEEECCCCCHHHHhhccCCceEEEhHHHH-HHHHHHHHHHcCCCccceEec-cccccc---ccCCCEEEEEc--CCCH
Confidence 4699999999999999887666655322221 12222333334443 3332 222322 26799988421 2222
Q ss_pred cchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 234 QRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 234 ~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
......|..+...|+||+.+++....
T Consensus 113 ~~l~~~L~~l~~~l~~~~~i~~~g~~ 138 (375)
T 4dcm_A 113 ALLEQQLRALRKVVTSDTRIIAGAKA 138 (375)
T ss_dssp HHHHHHHHHHHTTCCTTSEEEEEEEG
T ss_pred HHHHHHHHHHHhhCCCCCEEEEEecc
Confidence 33345788899999999999876643
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.70 E-value=7.6e-05 Score=73.99 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeC
Q 008748 134 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLG 209 (555)
Q Consensus 134 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d 209 (555)
...+.+.+.+.. .+..+|||||||+|.++..|++. .++++|+++.++..+ +++ ..++.+..+|
T Consensus 18 ~i~~~iv~~~~~--------~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~-----~~~~~~~v~~i~~D 84 (249)
T 3ftd_A 18 GVLKKIAEELNI--------EEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENL-----KSIGDERLEVINED 84 (249)
T ss_dssp HHHHHHHHHTTC--------CTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHH-----TTSCCTTEEEECSC
T ss_pred HHHHHHHHhcCC--------CCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHH-----HhccCCCeEEEEcc
Confidence 455556666543 23468999999999999999875 577888877666443 332 3467899999
Q ss_pred CCCCCCCC
Q 008748 210 TKRLPYPS 217 (555)
Q Consensus 210 ~~~Lp~~d 217 (555)
+..+++++
T Consensus 85 ~~~~~~~~ 92 (249)
T 3ftd_A 85 ASKFPFCS 92 (249)
T ss_dssp TTTCCGGG
T ss_pred hhhCChhH
Confidence 99888764
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00034 Score=73.23 Aligned_cols=118 Identities=9% Similarity=-0.037 Sum_probs=77.3
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
++.++||+||++|+++..|+++ .|+++|..+.+. .. .....+.+...|...+..+.+.||+|+|-. +.
T Consensus 211 ~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~--~l-----~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm-~~-- 280 (375)
T 4auk_A 211 NGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQ--SL-----MDTGQVTWLREDGFKFRPTRSNISWMVCDM-VE-- 280 (375)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCH--HH-----HTTTCEEEECSCTTTCCCCSSCEEEEEECC-SS--
T ss_pred CCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcCh--hh-----ccCCCeEEEeCccccccCCCCCcCEEEEcC-CC--
Confidence 3479999999999999999975 688898876442 11 124578889999887777777899999754 22
Q ss_pred ccchHHHHHHHHhhcCCC---cEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcE
Q 008748 233 LQRDGILLLELDRLLRPG---GYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 284 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPG---G~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~ 284 (555)
++...+.-+.+.|..| +.++..-........+.......+.+.++..|+.
T Consensus 281 --~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~ 333 (375)
T 4auk_A 281 --KPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGIN 333 (375)
T ss_dssp --CHHHHHHHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred --ChHHhHHHHHHHHhccccceEEEEEEecccchHHHHHHHHHHHHHHHHhcCcc
Confidence 3455555555555554 4333222222112233334566777888888875
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.68 E-value=2.8e-05 Score=87.19 Aligned_cols=97 Identities=11% Similarity=0.057 Sum_probs=66.5
Q ss_pred CCEEEEECCCCcHHHHH---H---hc---------C--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCC--
Q 008748 156 IRNVLDVGCGVASFGAY---L---LS---------H--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-- 216 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~---L---a~---------~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~-- 216 (555)
...|||||||+|.++.. . ++ . .|.+++-++..+...+...+..-+..+.++.++++++..+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 45899999999988532 1 12 1 6889999886654444333332345689999999888663
Q ss_pred ---CCCccEEEecccccccccch---HHHHHHHHhhcCCCcEEE
Q 008748 217 ---SRSFELAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFV 254 (555)
Q Consensus 217 ---d~sFDlVv~s~~~l~~~~d~---~~~L~el~RvLkPGG~lv 254 (555)
.+..|+|+|-- +.+.-+. ...|..+.|.|||||.++
T Consensus 490 ~~~~ekVDIIVSEl--mGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 490 DRGFEQPDIIVSEL--LGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HTTCCCCSEEEECC--CBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cCCCCcccEEEEec--cccccchhccHHHHHHHHHhCCCCcEEE
Confidence 46899999643 3332222 357888899999999866
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00014 Score=82.40 Aligned_cols=103 Identities=16% Similarity=0.058 Sum_probs=68.8
Q ss_pred CCEEEEECCCCcHHHHHHhc----------------------------------------------CCCccccCChhhhh
Q 008748 156 IRNVLDVGCGVASFGAYLLS----------------------------------------------HDIIAMSLAPNDVH 189 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~----------------------------------------------~~V~~vdis~~dls 189 (555)
...|||.+||+|.++..++. ..++|+|+++.++.
T Consensus 191 ~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~ 270 (703)
T 3v97_A 191 GTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQ 270 (703)
T ss_dssp TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHH
T ss_pred CCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHH
Confidence 35799999999998766542 25788999998887
Q ss_pred HHHHHHHHHcCCC--eEEEEeCCCCC--CCCCCCccEEEecccc-cccc--cchHHH---HHHHHhhcCCCcEEEEEcCC
Q 008748 190 ENQIQFALERGIP--STLGVLGTKRL--PYPSRSFELAHCSRCR-IDWL--QRDGIL---LLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 190 ~a~i~~A~~rg~~--v~~~~~d~~~L--p~~d~sFDlVv~s~~~-l~~~--~d~~~~---L~el~RvLkPGG~lvis~P~ 259 (555)
.+..+ +...|.. +.+.++|+..+ |..+++||+|+++--. .... .+...+ +.++.+.+.|||.+++.++.
T Consensus 271 ~A~~N-~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~~ 349 (703)
T 3v97_A 271 RARTN-ARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSAS 349 (703)
T ss_dssp HHHHH-HHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHH-HHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 77644 4444554 78999998777 3444489999986310 0111 122233 44555566689999987754
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=8.7e-06 Score=85.94 Aligned_cols=140 Identities=9% Similarity=0.123 Sum_probs=96.9
Q ss_pred HhHhhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhccccchhccc--
Q 008748 375 EDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDW-- 451 (555)
Q Consensus 375 ~d~~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl~g~~~~~-- 451 (555)
..+..|.+....+...+...+....=..|+|++||.|.++..|.+... +|+=++-. +.+...-++|+-.....+
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~ 159 (416)
T 4e2x_A 83 SGSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDFFEK 159 (416)
T ss_dssp GGCHHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSCCSH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceeeech
Confidence 445678777777666554444444456899999999999999987643 66666654 677777777653322111
Q ss_pred --ccCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecch--------------------hHHHH
Q 008748 452 --CESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS--------------------SIINY 509 (555)
Q Consensus 452 --ce~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~--------------------~~~~~ 509 (555)
.+.++.-+.+||+|.+.++|..+. +...+|-|+-|+|+|||.+++.... -..+.
T Consensus 160 ~~~~~l~~~~~~fD~I~~~~vl~h~~----d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 235 (416)
T 4e2x_A 160 ATADDVRRTEGPANVIYAANTLCHIP----YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATS 235 (416)
T ss_dssp HHHHHHHHHHCCEEEEEEESCGGGCT----THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHH
T ss_pred hhHhhcccCCCCEEEEEECChHHhcC----CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHH
Confidence 111121137999999999998653 4889999999999999999996321 01356
Q ss_pred HHHHHhhcCccc
Q 008748 510 IRKFITALKWDG 521 (555)
Q Consensus 510 ~~~~~~~~~w~~ 521 (555)
++.++..-.+++
T Consensus 236 l~~ll~~aGf~~ 247 (416)
T 4e2x_A 236 VQGMAQRCGFEL 247 (416)
T ss_dssp HHHHHHHTTEEE
T ss_pred HHHHHHHcCCEE
Confidence 777888777765
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.67 E-value=9.4e-06 Score=78.77 Aligned_cols=96 Identities=15% Similarity=0.216 Sum_probs=65.3
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhccccchhcccccCCCCC-CCccchhhccccccccccCC
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWCESFSTY-PRTYDLLHAWKVFSEIEERG 478 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl~g~~~~~ce~~~ty-prtydl~h~~~~~s~~~~~~ 478 (555)
.+|+|++||.|.++..|.+... +|+-++-. ..+...-++ +--+..|..+-...+ +.+||+|.+.++|..+..
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~-~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~-- 116 (240)
T 3dli_A 43 RRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGK-FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDP-- 116 (240)
T ss_dssp SCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHTT-SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCG--
T ss_pred CeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHhh-cceeeccHHHHhhhcCCCCeeEEEECCchhhCCc--
Confidence 5799999999999998876532 45555543 555555555 211112222211122 379999999999875432
Q ss_pred CChhhhhhhhcccccCCceEEEec
Q 008748 479 CSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 479 c~~~~~~~e~drilrp~g~~i~rd 502 (555)
-.+..+|-|+-|+|+|||.+++..
T Consensus 117 ~~~~~~l~~~~~~LkpgG~l~~~~ 140 (240)
T 3dli_A 117 ERLFELLSLCYSKMKYSSYIVIES 140 (240)
T ss_dssp GGHHHHHHHHHHHBCTTCCEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 246789999999999999999863
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.65 E-value=1.7e-05 Score=79.26 Aligned_cols=72 Identities=13% Similarity=0.100 Sum_probs=51.1
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCCh-------hhhhHHHHHHHHHcC-CCeEEEEeCCCCC-C-CCC--CCcc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAP-------NDVHENQIQFALERG-IPSTLGVLGTKRL-P-YPS--RSFE 221 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~-------~dls~a~i~~A~~rg-~~v~~~~~d~~~L-p-~~d--~sFD 221 (555)
..+|||+|||+|.++..|+.. .|+++|+++ .++..+..+...... .++.+..+|...+ + +++ ++||
T Consensus 84 ~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~fD 163 (258)
T 2r6z_A 84 HPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKPD 163 (258)
T ss_dssp CCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCCS
T ss_pred cCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCcc
Confidence 358999999999999999864 789999999 555444432222111 2488999997653 3 444 6899
Q ss_pred EEEecc
Q 008748 222 LAHCSR 227 (555)
Q Consensus 222 lVv~s~ 227 (555)
+|++.-
T Consensus 164 ~V~~dP 169 (258)
T 2r6z_A 164 IVYLDP 169 (258)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999765
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=97.64 E-value=4.7e-05 Score=73.08 Aligned_cols=92 Identities=21% Similarity=0.313 Sum_probs=63.6
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc---cccchhcccccCCCCCCCccchhhccccccccccC
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR---GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEER 477 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r---gl~g~~~~~ce~~~typrtydl~h~~~~~s~~~~~ 477 (555)
+|+|++||.|.++..|.+.-. +|+-++-. ..+...-++ ++--+-.|..+. ..+.+||+|++.+++..+.
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~--~~~~~fD~v~~~~~l~~~~-- 117 (250)
T 2p7i_A 45 NLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDA--QLPRRYDNIVLTHVLEHID-- 117 (250)
T ss_dssp CEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC--CCSSCEEEEEEESCGGGCS--
T ss_pred cEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc--CcCCcccEEEEhhHHHhhc--
Confidence 599999999999999976522 45555543 444444433 221122233232 2467999999999987543
Q ss_pred CCChhhhhhhhc-ccccCCceEEEec
Q 008748 478 GCSFEDLLIEMD-RMLRPEGFVIIRD 502 (555)
Q Consensus 478 ~c~~~~~~~e~d-rilrp~g~~i~rd 502 (555)
+...+|-|+- |+|+|||++++.+
T Consensus 118 --~~~~~l~~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 118 --DPVALLKRINDDWLAEGGRLFLVC 141 (250)
T ss_dssp --SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred --CHHHHHHHHHHHhcCCCCEEEEEc
Confidence 3678999999 9999999999865
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.64 E-value=5.3e-05 Score=76.54 Aligned_cols=72 Identities=13% Similarity=0.157 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--C----CccccCChhhhhHHHHHHHHHcCCCeEEEE
Q 008748 134 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--D----IIAMSLAPNDVHENQIQFALERGIPSTLGV 207 (555)
Q Consensus 134 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~----V~~vdis~~dls~a~i~~A~~rg~~v~~~~ 207 (555)
...+.+.+.+.. ....+|||||||+|.++..|++. . |+++|+++.++..+..+ + ..++.+..
T Consensus 29 ~i~~~iv~~~~~--------~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~-~---~~~v~~i~ 96 (279)
T 3uzu_A 29 GVIDAIVAAIRP--------ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQR-F---GELLELHA 96 (279)
T ss_dssp HHHHHHHHHHCC--------CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHH-H---GGGEEEEE
T ss_pred HHHHHHHHhcCC--------CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHh-c---CCCcEEEE
Confidence 345556666653 23468999999999999999863 4 89999998887666544 2 45689999
Q ss_pred eCCCCCCCCC
Q 008748 208 LGTKRLPYPS 217 (555)
Q Consensus 208 ~d~~~Lp~~d 217 (555)
+|+..+++++
T Consensus 97 ~D~~~~~~~~ 106 (279)
T 3uzu_A 97 GDALTFDFGS 106 (279)
T ss_dssp SCGGGCCGGG
T ss_pred CChhcCChhH
Confidence 9998888753
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=97.62 E-value=3.1e-05 Score=75.08 Aligned_cols=117 Identities=17% Similarity=0.246 Sum_probs=77.4
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhccc------cchh-cccccCCCCCCCccchhhccccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGL------IGTV-HDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl------~g~~-~~~ce~~~typrtydl~h~~~~~ 471 (555)
-.+|+|++||.|.++..|...- .-+|+-++-. ..+...-++.- +-++ .| .+.++.-+.+||+|.+..+|
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d-~~~~~~~~~~fD~v~~~~~l 156 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCG-LQDFTPEPDSYDVIWIQWVI 156 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECC-GGGCCCCSSCEEEEEEESCG
T ss_pred CCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcC-hhhcCCCCCCEEEEEEcchh
Confidence 5689999999999999887653 1245555532 33443333210 1122 23 23344434589999999887
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEecch---------------hHHHHHHHHHhhcCccc
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS---------------SIINYIRKFITALKWDG 521 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~---------------~~~~~~~~~~~~~~w~~ 521 (555)
..+... .+..+|-|+-|+|+|||.+++.|.. ...+++++++....++.
T Consensus 157 ~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 219 (241)
T 2ex4_A 157 GHLTDQ--HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSL 219 (241)
T ss_dssp GGSCHH--HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCE
T ss_pred hhCCHH--HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeE
Confidence 744321 2457899999999999999996531 13778888888888876
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.62 E-value=5.7e-05 Score=69.61 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=75.1
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhccc-cch-hcccccCCCCCCCccchhhcc-cccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGL-IGT-VHDWCESFSTYPRTYDLLHAW-KVFSEIEE 476 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl-~g~-~~~~ce~~~typrtydl~h~~-~~~s~~~~ 476 (555)
.+|+|++||.|.++..|..... +|+-++.. ..+...-++.- +-+ ..|..+ ++.-+.+||+|.++ .++.....
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~~~~D~i~~~~~~~~~~~~ 123 (195)
T 3cgg_A 48 AKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFPEARWVVGDLSV-DQISETDFDLIVSAGNVMGFLAE 123 (195)
T ss_dssp CEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSEEEECCTTT-SCCCCCCEEEEEECCCCGGGSCH
T ss_pred CeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCCCCcEEEccccc-CCCCCCceeEEEECCcHHhhcCh
Confidence 4899999999999999876532 55555543 33433333310 112 223322 22224789999988 56653311
Q ss_pred CCCChhhhhhhhcccccCCceEEEecchh---HHHHHHHHHhhcCccce
Q 008748 477 RGCSFEDLLIEMDRMLRPEGFVIIRDKSS---IINYIRKFITALKWDGW 522 (555)
Q Consensus 477 ~~c~~~~~~~e~drilrp~g~~i~rd~~~---~~~~~~~~~~~~~w~~~ 522 (555)
=....+|-++-|+|+|||.+++..... ...++.+++....+++.
T Consensus 124 --~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 170 (195)
T 3cgg_A 124 --DGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELE 170 (195)
T ss_dssp --HHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEE
T ss_pred --HHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEe
Confidence 125788999999999999999854332 46778888888888763
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=2.1e-05 Score=79.13 Aligned_cols=97 Identities=11% Similarity=0.204 Sum_probs=67.4
Q ss_pred cceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhc----cccc----hhcccccCCCCCCCccchhhcc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR----GLIG----TVHDWCESFSTYPRTYDLLHAW 468 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~r----gl~g----~~~~~ce~~~typrtydl~h~~ 468 (555)
.-..|+|++||.|+++..|... + .+|+-++-. ..+...-++ |+-+ +..|+. .+ +.+||+|.+.
T Consensus 72 ~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~---~~~fD~v~~~ 144 (302)
T 3hem_A 72 PGMTLLDIGCGWGSTMRHAVAEYD---VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE-EF---DEPVDRIVSL 144 (302)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGG-GC---CCCCSEEEEE
T ss_pred CcCEEEEeeccCcHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHH-Hc---CCCccEEEEc
Confidence 3457999999999999998765 5 256666543 555544433 5431 223333 23 7899999999
Q ss_pred cccccccc-----CCCChhhhhhhhcccccCCceEEEec
Q 008748 469 KVFSEIEE-----RGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 469 ~~~s~~~~-----~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
++|..+.. ..-....+|-|+-|+|+|||.+++.+
T Consensus 145 ~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 145 GAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 183 (302)
T ss_dssp SCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred chHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 98875422 11235789999999999999999875
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0001 Score=81.24 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=69.5
Q ss_pred EEEEECCCCcHHHHHHhc-------------------CCCccccCChhhhhHHHHHHHHHcCCCeEE--EEeCCCCCC-C
Q 008748 158 NVLDVGCGVASFGAYLLS-------------------HDIIAMSLAPNDVHENQIQFALERGIPSTL--GVLGTKRLP-Y 215 (555)
Q Consensus 158 ~VLDIGCGtG~~a~~La~-------------------~~V~~vdis~~dls~a~i~~A~~rg~~v~~--~~~d~~~Lp-~ 215 (555)
+|||.+||+|.|...+++ ..+.|+|+++..+..+..+... .+....+ ..+|+...+ +
T Consensus 247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l-~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVI-RGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHH-TTCCCBCCSSSCCTTTSCSC
T ss_pred eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHH-hCCCcccceeccchhcCccc
Confidence 899999999998776532 2577888888877666655544 3443333 566654443 4
Q ss_pred CCCCccEEEeccccc--cccc-------------------------ch-HHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 216 PSRSFELAHCSRCRI--DWLQ-------------------------RD-GILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 216 ~d~sFDlVv~s~~~l--~~~~-------------------------d~-~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
++..||+|+++--.. .|.. +. -.++..+.+.|+|||+++++.|..
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g 398 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANG 398 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETH
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecch
Confidence 567899999853211 1110 00 148999999999999999999874
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.60 E-value=6.1e-05 Score=70.87 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=66.2
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----ccc---chhcccccCCCCCCCccchhhccccccc
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GLI---GTVHDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl~---g~~~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
+|+|++||.|.++..|...+- .+|+-++-. ..+...-++ |+- -.++.=.+.++.-+.+||+|.+.+++..
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~ 123 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFF 123 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSE--EEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGG
T ss_pred EEEEECCCCCHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhh
Confidence 899999999999999987632 356666643 455444333 432 2222222333433479999999998875
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEec
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+ -+...+|-|+-|+|+|||.+++.+
T Consensus 124 ~----~~~~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 124 W----EDVATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp C----SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c----cCHHHHHHHHHHhCCCCCEEEEEe
Confidence 4 247889999999999999999974
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.60 E-value=2.6e-05 Score=77.03 Aligned_cols=98 Identities=15% Similarity=0.292 Sum_probs=65.0
Q ss_pred cceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhc----cc--cchhcccccCCCCCCCccchhhcccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR----GL--IGTVHDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~r----gl--~g~~~~~ce~~~typrtydl~h~~~~ 470 (555)
.=.+|+|++||.|.++..|... |- ..|+-++.. ..+...-++ |+ +-....=.+.++.-+.+||+|++..+
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNNPD--AEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 3468999999999999988654 21 134444432 444443332 43 22222122234433579999999998
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
|..+. +...+|-++-|+|+|||++++.+
T Consensus 115 l~~~~----~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 115 LEHLQ----SPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp GGGCS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhcC----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 87442 36789999999999999999965
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.60 E-value=4.1e-05 Score=71.94 Aligned_cols=116 Identities=11% Similarity=0.143 Sum_probs=81.2
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhcc--ccchhcccccCCCCCCCccchhhccccccccccC
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRG--LIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEER 477 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rg--l~g~~~~~ce~~~typrtydl~h~~~~~s~~~~~ 477 (555)
..|+|++||.|.++..|..... +|+-++-. ..+...-++. +-=+..|.. .++.-+.+||+|.+.++|..+.
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~~~~-- 116 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTIT-DLSDSPKRWAGLLAWYSLIHMG-- 116 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCGG-GGGGSCCCEEEEEEESSSTTCC--
T ss_pred CeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCccc-ccccCCCCeEEEEehhhHhcCC--
Confidence 4799999999999999976632 45555543 4555555542 211222332 2333347999999999887543
Q ss_pred CCChhhhhhhhcccccCCceEEEecch----------------hHHHHHHHHHhhcCccce
Q 008748 478 GCSFEDLLIEMDRMLRPEGFVIIRDKS----------------SIINYIRKFITALKWDGW 522 (555)
Q Consensus 478 ~c~~~~~~~e~drilrp~g~~i~rd~~----------------~~~~~~~~~~~~~~w~~~ 522 (555)
.-+...+|-++-|+|+|||.+++.+.. -..+++++++....|++.
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 177 (203)
T 3h2b_A 117 PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVT 177 (203)
T ss_dssp TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEE
Confidence 125789999999999999999987522 237889999999999873
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=3.6e-05 Score=73.08 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=69.8
Q ss_pred cCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhcc----ccchhcccccCCCCCCCccchhhccc
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRG----LIGTVHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rg----l~g~~~~~ce~~~typrtydl~h~~~ 469 (555)
+....-.+|+|++||.|.++..|...- .+|+-++-. ..+...-++. -+-+++.=.+.++ -+.+||+|.+.+
T Consensus 47 ~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~ 122 (216)
T 3ofk_A 47 LSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAE 122 (216)
T ss_dssp TTTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEES
T ss_pred cccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEcc
Confidence 455667899999999999999998752 467777654 4555444432 1222222223333 367999999998
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+|..+.. .-.+..+|-++-|+|+|||.+++.+
T Consensus 123 ~l~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 123 VLYYLED-MTQMRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp CGGGSSS-HHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHhCCC-HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 8874331 1123567999999999999999953
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.58 E-value=6.6e-05 Score=68.42 Aligned_cols=129 Identities=15% Similarity=0.156 Sum_probs=84.9
Q ss_pred cceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc--cccchhcccccCCCCCCCccchhhccccccccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR--GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 475 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r--gl~g~~~~~ce~~~typrtydl~h~~~~~s~~~ 475 (555)
.-.+|+|++||.|.++.+|...- . +|+-++-. ..+...-++ .+--+..| . +.-+.+||+|.+..++..+.
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~--~~~~~~~D~v~~~~~l~~~~ 89 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFA-T--KLYCIDINVIALKEVKEKFDSVITLSDP--K--EIPDNSVDFILFANSFHDMD 89 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTE-E--EEEEECSCHHHHHHHHHHCTTSEEESSG--G--GSCTTCEEEEEEESCSTTCS
T ss_pred CCCeEEEECCCCCHHHHHHHhhc-C--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--C--CCCCCceEEEEEccchhccc
Confidence 34689999999999999998764 1 67777653 555555554 12112223 2 22246999999999887542
Q ss_pred cCCCChhhhhhhhcccccCCceEEEecchh-------------HHHHHHHHHhhcCccceecccccccccCCCCCceEEE
Q 008748 476 ERGCSFEDLLIEMDRMLRPEGFVIIRDKSS-------------IINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLI 542 (555)
Q Consensus 476 ~~~c~~~~~~~e~drilrp~g~~i~rd~~~-------------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~ 542 (555)
+...+|-|+-|+|+|||.+++.+-.. ..+++++++. .|+.. ... . . ....-.|+
T Consensus 90 ----~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~-~~~---~--~-~~~~~~l~ 156 (170)
T 3i9f_A 90 ----DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVE-KRF---N--P-TPYHFGLV 156 (170)
T ss_dssp ----CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEE-EEE---C--S-STTEEEEE
T ss_pred ----CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEE-Ecc---C--C-CCceEEEE
Confidence 47889999999999999999874321 2556777777 66652 111 1 1 12456777
Q ss_pred EEecc
Q 008748 543 AKKKL 547 (555)
Q Consensus 543 ~~k~~ 547 (555)
+.|+=
T Consensus 157 ~~~~~ 161 (170)
T 3i9f_A 157 LKRKT 161 (170)
T ss_dssp EEECC
T ss_pred EecCC
Confidence 77653
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=3.1e-05 Score=78.46 Aligned_cols=98 Identities=11% Similarity=0.201 Sum_probs=66.1
Q ss_pred ceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhc----cccchhcccccCCCCCCCccchhhccccccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR----GLIGTVHDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~r----gl~g~~~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
-.+|+|++||.|+++..|... .. +|+-++-. ..+...-++ |+-....-.+..+...|.+||+|.+.++|..
T Consensus 91 ~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~l~~ 167 (318)
T 2fk8_A 91 GMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEH 167 (318)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred cCEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEEEEeChHHh
Confidence 357999999999999888754 33 55555543 555554443 5422111112222334689999999998875
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEec
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+.. -+...+|-|+-|+|+|||.+++.+
T Consensus 168 ~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 194 (318)
T 2fk8_A 168 FGH--ENYDDFFKRCFNIMPADGRMTVQS 194 (318)
T ss_dssp TCG--GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cCH--HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 421 236789999999999999999864
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=97.58 E-value=3.1e-05 Score=73.57 Aligned_cols=97 Identities=18% Similarity=0.263 Sum_probs=64.7
Q ss_pred cceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc---cccchhcccccCCCCCCCccchhhcccccccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR---GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEI 474 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r---gl~g~~~~~ce~~~typrtydl~h~~~~~s~~ 474 (555)
.-.+|+|++||.|.++..|.... .+|+-++-. ..+...-++ .+-=+..|..+ ++ ++.+||+|.+.++|..+
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~~l~~~ 119 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMRMIAKEKLPKEFSITEGDFLS-FE-VPTSIDTIVSTYAFHHL 119 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTT---CEEEEECSCHHHHHHHHHHSCTTCCEESCCSSS-CC-CCSCCSEEEEESCGGGS
T ss_pred CCCeEEEeCCCCCHHHHHHHhCC---CeEEEEeCCHHHHHHHHHhCCCceEEEeCChhh-cC-CCCCeEEEEECcchhcC
Confidence 34589999999999999998663 255556543 445444444 22212223332 22 23899999999988754
Q ss_pred ccCCCChhhhhhhhcccccCCceEEEec
Q 008748 475 EERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 475 ~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
... ....+|-|+-|+|+|||.+++.+
T Consensus 120 ~~~--~~~~~l~~~~~~LkpgG~l~i~~ 145 (220)
T 3hnr_A 120 TDD--EKNVAIAKYSQLLNKGGKIVFAD 145 (220)
T ss_dssp CHH--HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ChH--HHHHHHHHHHHhcCCCCEEEEEe
Confidence 321 11348999999999999999975
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00017 Score=79.42 Aligned_cols=122 Identities=14% Similarity=0.114 Sum_probs=80.6
Q ss_pred HHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc-------CCCccccCChhhhhHHHHHHHHHcCC---CeE
Q 008748 135 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-------HDIIAMSLAPNDVHENQIQFALERGI---PST 204 (555)
Q Consensus 135 y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-------~~V~~vdis~~dls~a~i~~A~~rg~---~v~ 204 (555)
..+.+.+++.... ......+|||.+||+|.+...+++ ..+.|+|+++.....+..+.... +. ...
T Consensus 205 Vv~lmv~ll~~~~----~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~-gi~~~~~~ 279 (542)
T 3lkd_A 205 VAKLMTQIAFLGR----EDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILH-GVPIENQF 279 (542)
T ss_dssp HHHHHHHHHHTTC----TTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHT-TCCGGGEE
T ss_pred HHHHHHHHHhccc----CCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHc-CCCcCccc
Confidence 4555666654211 012346899999999988776653 25778888888776666555443 43 467
Q ss_pred EEEeCCCCC--C-CCCCCccEEEecccc-cccc------c--------------c-hHHHHHHHHhhcC-CCcEEEEEcC
Q 008748 205 LGVLGTKRL--P-YPSRSFELAHCSRCR-IDWL------Q--------------R-DGILLLELDRLLR-PGGYFVYSSP 258 (555)
Q Consensus 205 ~~~~d~~~L--p-~~d~sFDlVv~s~~~-l~~~------~--------------d-~~~~L~el~RvLk-PGG~lvis~P 258 (555)
+..+|+... | .....||+|+++--. ..|. . + .-.++..+.+.|+ |||++.++.|
T Consensus 280 I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 280 LHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp EEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred eEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 888887655 4 456789999985210 0110 0 0 0237999999999 9999999998
Q ss_pred CCC
Q 008748 259 EAY 261 (555)
Q Consensus 259 ~~~ 261 (555)
..+
T Consensus 360 ~g~ 362 (542)
T 3lkd_A 360 HGV 362 (542)
T ss_dssp THH
T ss_pred chH
Confidence 753
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00016 Score=73.53 Aligned_cols=134 Identities=13% Similarity=0.142 Sum_probs=88.0
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCC-CCchhHHhhc--cccc----hhcccc-cCCCCCCCccchhhcccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR--GLIG----TVHDWC-ESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~-~~~l~~i~~r--gl~g----~~~~~c-e~~~typrtydl~h~~~~~s 472 (555)
+.|+|++||.|+|+..|..... -.|+-+|- ++.|..-..+ .++. -..... +.++ ..+||++-++-.|.
T Consensus 87 ~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~--~~~fD~v~~d~sf~ 162 (291)
T 3hp7_A 87 MITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFT--EGLPSFASIDVSFI 162 (291)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCT--TCCCSEEEECCSSS
T ss_pred cEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCC--CCCCCEEEEEeeHh
Confidence 5799999999999988865532 24555664 4666653321 1110 011111 2222 13599999888776
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEEe---------c-------------chhHHHHHHHHHhhcCccceeccccccc
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVIIR---------D-------------KSSIINYIRKFITALKWDGWLSEVEPRI 530 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~r---------d-------------~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 530 (555)
++..+|-|+-|+|+|||.+++= + ...++++|.+.+....|.+...+..+..
T Consensus 163 -------sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~ 235 (291)
T 3hp7_A 163 -------SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQ 235 (291)
T ss_dssp -------CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSC
T ss_pred -------hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
Confidence 2688999999999999999864 1 1136888999999999998654444444
Q ss_pred ccCCCCCceEEEEEec
Q 008748 531 DALSSSEERVLIAKKK 546 (555)
Q Consensus 531 ~~~~~~~~~~l~~~k~ 546 (555)
|+. .+.|=++.++|.
T Consensus 236 g~~-gn~e~l~~~~~~ 250 (291)
T 3hp7_A 236 GGH-GNIEFLAHLEKT 250 (291)
T ss_dssp CGG-GCCCEEEEEEEC
T ss_pred CCC-cCHHHHHHhhhc
Confidence 543 356777777773
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=97.55 E-value=3.2e-05 Score=77.07 Aligned_cols=93 Identities=15% Similarity=0.148 Sum_probs=63.0
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhccccchhcccccCCCCCCCccchhhccccccccccCCC
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGC 479 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl~g~~~~~ce~~~typrtydl~h~~~~~s~~~~~~c 479 (555)
.+|+|++||.|.++..|.+.-- +|+-++-. ..|...-.+.=|-..+.=.|.++.=+.+||+|.+...|. + .
T Consensus 41 ~~vLDvGcGtG~~~~~l~~~~~---~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h-~----~ 112 (257)
T 4hg2_A 41 GDALDCGCGSGQASLGLAEFFE---RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMH-W----F 112 (257)
T ss_dssp SEEEEESCTTTTTHHHHHTTCS---EEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCT-T----C
T ss_pred CCEEEEcCCCCHHHHHHHHhCC---EEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehh-H----h
Confidence 4699999999999999986532 45555533 333322222222223333455554467999999988875 2 3
Q ss_pred ChhhhhhhhcccccCCceEEEe
Q 008748 480 SFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 480 ~~~~~~~e~drilrp~g~~i~r 501 (555)
+....+-|+-|+|||||.+++-
T Consensus 113 ~~~~~~~e~~rvLkpgG~l~~~ 134 (257)
T 4hg2_A 113 DLDRFWAELRRVARPGAVFAAV 134 (257)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCCEEEEE
Confidence 4778999999999999998763
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=97.53 E-value=3.6e-05 Score=73.09 Aligned_cols=97 Identities=12% Similarity=0.175 Sum_probs=67.1
Q ss_pred cceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhccccchhcccccCCCCC-CCccchhhcccccccccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWCESFSTY-PRTYDLLHAWKVFSEIEE 476 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl~g~~~~~ce~~~ty-prtydl~h~~~~~s~~~~ 476 (555)
.-.+|+|++||.|.++.+|...+ .+|+-++-. ..+...-++.---+..|..+....+ +.+||+|.+.++|..+.
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~- 107 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLF- 107 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSS-
T ss_pred CCCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcC-
Confidence 44689999999999999998875 356666643 4444444443211222333211233 37999999999887543
Q ss_pred CCCChhhhhhhhcccccCCceEEEec
Q 008748 477 RGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 477 ~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+...+|-++-|+|+|||.+++..
T Consensus 108 ---~~~~~l~~~~~~L~~gG~l~~~~ 130 (230)
T 3cc8_A 108 ---DPWAVIEKVKPYIKQNGVILASI 130 (230)
T ss_dssp ---CHHHHHHHTGGGEEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCCEEEEEe
Confidence 36789999999999999999864
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=4.3e-05 Score=74.45 Aligned_cols=100 Identities=19% Similarity=0.265 Sum_probs=67.9
Q ss_pred CcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhcc-----ccchhcccccCCCCCCCccchhhccccc
Q 008748 398 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRG-----LIGTVHDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 398 ~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rg-----l~g~~~~~ce~~~typrtydl~h~~~~~ 471 (555)
..-.+|+|++||.|.++..|...- -.+|+-++-. ..+...-++. +--+..|..+ ++.-+.+||+|++.++|
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l 130 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILT-KEFPENNFDLIYSRDAI 130 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTT-CCCCTTCEEEEEEESCG
T ss_pred CCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECcccc-CCCCCCcEEEEeHHHHH
Confidence 344589999999999999887641 1255555543 5555555543 1112334433 33335799999999988
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
..+.. -+...+|-|+-|+|||||.+++.+
T Consensus 131 ~~~~~--~~~~~~l~~~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 131 LALSL--ENKNKLFQKCYKWLKPTGTLLITD 159 (266)
T ss_dssp GGSCH--HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhcCh--HHHHHHHHHHHHHcCCCCEEEEEE
Confidence 75411 236789999999999999999875
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.53 E-value=4.1e-05 Score=76.13 Aligned_cols=81 Identities=11% Similarity=0.067 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc-CC--CccccCChhhhhHHHHHHHHHcCCCeEEEEeCCC
Q 008748 135 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-HD--IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK 211 (555)
Q Consensus 135 y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-~~--V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~ 211 (555)
..+.+.+.+.. .+..+|||||||+|.++. +.. .. |+++|+++.++..+..+... ..++.+..+|+.
T Consensus 9 i~~~iv~~~~~--------~~~~~VLEIG~G~G~lt~-l~~~~~~~v~avEid~~~~~~a~~~~~~--~~~v~~i~~D~~ 77 (252)
T 1qyr_A 9 VIDSIVSAINP--------QKGQAMVEIGPGLAALTE-PVGERLDQLTVIELDRDLAARLQTHPFL--GPKLTIYQQDAM 77 (252)
T ss_dssp HHHHHHHHHCC--------CTTCCEEEECCTTTTTHH-HHHTTCSCEEEECCCHHHHHHHHTCTTT--GGGEEEECSCGG
T ss_pred HHHHHHHhcCC--------CCcCEEEEECCCCcHHHH-hhhCCCCeEEEEECCHHHHHHHHHHhcc--CCceEEEECchh
Confidence 44555555543 223579999999999999 764 35 88888888776444322111 136889999998
Q ss_pred CCCCCCC-----CccEEEec
Q 008748 212 RLPYPSR-----SFELAHCS 226 (555)
Q Consensus 212 ~Lp~~d~-----sFDlVv~s 226 (555)
.+++++. ..|.|+++
T Consensus 78 ~~~~~~~~~~~~~~~~vvsN 97 (252)
T 1qyr_A 78 TFNFGELAEKMGQPLRVFGN 97 (252)
T ss_dssp GCCHHHHHHHHTSCEEEEEE
T ss_pred hCCHHHhhcccCCceEEEEC
Confidence 8876532 23566644
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.52 E-value=4.3e-05 Score=73.58 Aligned_cols=114 Identities=15% Similarity=0.149 Sum_probs=77.7
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhccc---cchhcccccCCCCCCCccchhhcccccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGL---IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 476 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl---~g~~~~~ce~~~typrtydl~h~~~~~s~~~~ 476 (555)
.+|+|++||.|.++.+|..... +|+-++-. ..+...-+++. +-.++.=.+.++.-+.+||+|.+.++|..+.
T Consensus 55 ~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~- 130 (242)
T 3l8d_A 55 AEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTE- 130 (242)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSS-
T ss_pred CeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhcc-
Confidence 4899999999999999987633 55556543 55666665532 1112211223343357999999999888542
Q ss_pred CCCChhhhhhhhcccccCCceEEEecch----------------------hHHHHHHHHHhhcCccc
Q 008748 477 RGCSFEDLLIEMDRMLRPEGFVIIRDKS----------------------SIINYIRKFITALKWDG 521 (555)
Q Consensus 477 ~~c~~~~~~~e~drilrp~g~~i~rd~~----------------------~~~~~~~~~~~~~~w~~ 521 (555)
+...+|-++-|+|+|||.+++.+.. -...++++++....+++
T Consensus 131 ---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 194 (242)
T 3l8d_A 131 ---EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKV 194 (242)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEE
T ss_pred ---CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEE
Confidence 3678999999999999999997511 12346777777777765
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=1.1e-05 Score=80.37 Aligned_cols=100 Identities=18% Similarity=0.301 Sum_probs=66.1
Q ss_pred cceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cccchh-------cccccCCC---CCCCccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GLIGTV-------HDWCESFS---TYPRTYD 463 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl~g~~-------~~~ce~~~---typrtyd 463 (555)
.-.+|+|++||.|.++..|.+... +|+-++-. ..|...-++ +.-+.+ .|+.+ ++ .-+.+||
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~fD 132 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT-LDKDVPAGDGFD 132 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG-HHHHSCCTTCEE
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh-CccccccCCCeE
Confidence 346899999999999999987643 67777754 555555433 221111 12211 11 2247999
Q ss_pred hhhcc-cccccccc---CCCChhhhhhhhcccccCCceEEEec
Q 008748 464 LLHAW-KVFSEIEE---RGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 464 l~h~~-~~~s~~~~---~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+|++. .+|..+.. ..-....+|-|+-|+|+|||++++..
T Consensus 133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 99997 67664322 11236789999999999999999864
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=97.51 E-value=9.8e-05 Score=69.63 Aligned_cols=112 Identities=17% Similarity=0.194 Sum_probs=76.4
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cccchhcccccCCCCCCCccchhhccccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 475 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl~g~~~~~ce~~~typrtydl~h~~~~~s~~~ 475 (555)
.+|+|++||.|.++.+|...+. .+|+-++.. ..+...-++ |+-.+----+..++..+.+||+|.++..+..
T Consensus 62 ~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~-- 137 (205)
T 3grz_A 62 LTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI-- 137 (205)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH--
T ss_pred CEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH--
Confidence 5799999999999999876643 245555543 444443332 5422111112223334689999998876652
Q ss_pred cCCCChhhhhhhhcccccCCceEEEec-chhHHHHHHHHHhhcCccc
Q 008748 476 ERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDG 521 (555)
Q Consensus 476 ~~~c~~~~~~~e~drilrp~g~~i~rd-~~~~~~~~~~~~~~~~w~~ 521 (555)
+..++-++-|+|+|||.+++.+ .......+.+++....++.
T Consensus 138 -----~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~ 179 (205)
T 3grz_A 138 -----LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQI 179 (205)
T ss_dssp -----HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEE
T ss_pred -----HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCce
Confidence 5788999999999999999864 3445777888888877776
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=4.5e-05 Score=72.00 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=66.7
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhccccch---hcccccCCCCCCCccchhhcccccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGT---VHDWCESFSTYPRTYDLLHAWKVFSEIEE 476 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl~g~---~~~~ce~~~typrtydl~h~~~~~s~~~~ 476 (555)
.+|+|++||.|.++..|.... .+|+-++-. ..+...-++|+-.+ ..|..+. .-+.+||+|.+.++|..+..
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~--~~~~~~D~v~~~~~l~~~~~ 122 (218)
T 3ou2_A 48 GDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW--TPDRQWDAVFFAHWLAHVPD 122 (218)
T ss_dssp SEEEEESCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC--CCSSCEEEEEEESCGGGSCH
T ss_pred CeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHhcCCCCeEEEecccccC--CCCCceeEEEEechhhcCCH
Confidence 489999999999999987652 255555543 55555555663221 2233222 23579999999998875432
Q ss_pred CCCChhhhhhhhcccccCCceEEEecc
Q 008748 477 RGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 477 ~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
-.+..+|-|+-|+|+|||.+++.+.
T Consensus 123 --~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 123 --DRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp --HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 1257899999999999999998754
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=3e-05 Score=75.50 Aligned_cols=112 Identities=16% Similarity=0.241 Sum_probs=76.6
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHh----hccccc----hhcccccCCCCCCCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIY----DRGLIG----TVHDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~----~rgl~g----~~~~~ce~~~typrtydl~h~~~~ 470 (555)
..|+|++||.|.++..|... +. .|+-++-. ..+...- +.|+-+ +..|. +.++.-+.+||+|++.++
T Consensus 48 ~~vLDiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~ 123 (257)
T 3f4k_A 48 AKIADIGCGTGGQTLFLADYVKG---QITGIDLFPDFIEIFNENAVKANCADRVKGITGSM-DNLPFQNEELDLIWSEGA 123 (257)
T ss_dssp CEEEEETCTTSHHHHHHHHHCCS---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCSSCTTCEEEEEEESC
T ss_pred CeEEEeCCCCCHHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh-hhCCCCCCCEEEEEecCh
Confidence 48999999999999888654 32 55555543 4454433 335422 23344 444433479999999998
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEecch---------------------hHHHHHHHHHhhcCccc
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS---------------------SIINYIRKFITALKWDG 521 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~---------------------~~~~~~~~~~~~~~w~~ 521 (555)
+..+ +...+|-++-|+|||||.+++.+.. ....++.+++..-.++.
T Consensus 124 l~~~-----~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 190 (257)
T 3f4k_A 124 IYNI-----GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTP 190 (257)
T ss_dssp SCCC-----CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEE
T ss_pred Hhhc-----CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeE
Confidence 8743 4789999999999999999998621 12455666777666665
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=97.50 E-value=7.4e-05 Score=72.74 Aligned_cols=95 Identities=13% Similarity=0.173 Sum_probs=65.4
Q ss_pred cceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc------cccchhcccccCCCCCCCccchhhccccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR------GLIGTVHDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r------gl~g~~~~~ce~~~typrtydl~h~~~~~ 471 (555)
.-.+|+|++||.|.++..|.+.. .+|+-++-. ..+...-++ ++--+..|. +.++.-+.+||+|++..+|
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIARG---YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADA-RAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHTTT---CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCT-TSCCSCTTCEEEEEEESCG
T ss_pred CCCEEEEeCCcCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhhccCCceEEEEccc-ccCCCCCCCeeEEEECCch
Confidence 34689999999999999998763 355555543 445544443 111122333 3344334689999999888
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
..+. +...++-|+-|+|+|||.+++.
T Consensus 115 ~~~~----~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 115 HLVP----DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGCT----THHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcC----CHHHHHHHHHHHCCCCcEEEEE
Confidence 7432 4788999999999999999975
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=97.50 E-value=7e-05 Score=72.83 Aligned_cols=94 Identities=14% Similarity=0.163 Sum_probs=63.1
Q ss_pred ceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHh----hcccc---ch-hcccccCCCCCCCccchhhccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIY----DRGLI---GT-VHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~----~rgl~---g~-~~~~ce~~~typrtydl~h~~~ 469 (555)
-.+|+|++||.|.++.+|... .. +|+-++.. ..+...- +.|+- -+ ..|+. .++. +.+||+|.+.+
T Consensus 37 ~~~VLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~-~~~~-~~~fD~V~~~~ 111 (256)
T 1nkv_A 37 GTRILDLGSGSGEMLCTWARDHGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA-GYVA-NEKCDVAACVG 111 (256)
T ss_dssp TCEEEEETCTTCHHHHHHHHHTCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT-TCCC-SSCEEEEEEES
T ss_pred CCEEEEECCCCCHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChH-hCCc-CCCCCEEEECC
Confidence 358999999999999888643 22 44545543 4444332 33442 22 22333 3333 78999999987
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
++-... +...+|-|+-|+|||||.+++.+
T Consensus 112 ~~~~~~----~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 112 ATWIAG----GFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp CGGGTS----SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred ChHhcC----CHHHHHHHHHHHcCCCeEEEEec
Confidence 775322 47889999999999999999975
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=97.50 E-value=5.9e-05 Score=75.37 Aligned_cols=96 Identities=22% Similarity=0.326 Sum_probs=65.9
Q ss_pred cceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhh----ccc---cchh-cccccCCCCCCCccchhhcc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYD----RGL---IGTV-HDWCESFSTYPRTYDLLHAW 468 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~----rgl---~g~~-~~~ce~~~typrtydl~h~~ 468 (555)
.-.+|+|++||.|.++..|... +. +|+-++-. ..+...-+ .|+ +-+. .|. +.++.-+.+||+|.+.
T Consensus 82 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~ 157 (297)
T 2o57_A 82 RQAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF-LEIPCEDNSYDFIWSQ 157 (297)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT-TSCSSCTTCEEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCc-ccCCCCCCCEeEEEec
Confidence 3458999999999999988764 33 56666543 44444333 344 2222 232 2233224799999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 469 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 469 ~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+++..+. +...+|-|+-|+|||||.+++.+
T Consensus 158 ~~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~ 187 (297)
T 2o57_A 158 DAFLHSP----DKLKVFQECARVLKPRGVMAITD 187 (297)
T ss_dssp SCGGGCS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhhcC----CHHHHHHHHHHHcCCCeEEEEEE
Confidence 8887543 26889999999999999999875
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=97.49 E-value=7.2e-05 Score=68.86 Aligned_cols=115 Identities=14% Similarity=0.191 Sum_probs=73.5
Q ss_pred cceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cc-----cchhcccccCCCCCCCccchhhcc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GL-----IGTVHDWCESFSTYPRTYDLLHAW 468 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl-----~g~~~~~ce~~~typrtydl~h~~ 468 (555)
.-..|+|++||.|.++.+|.... -+|+-++.. ..+...-++ |+ --+..|+.+.++ +.+||+|.++
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~ 126 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKIITN 126 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEEEC
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--cCCceEEEEC
Confidence 34589999999999998887652 255555543 444433332 33 223345555443 5799999988
Q ss_pred ccccccccCCCChhhhhhhhcccccCCceEEEecch-hHHHHHHHHHhhcCccc
Q 008748 469 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS-SIINYIRKFITALKWDG 521 (555)
Q Consensus 469 ~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~-~~~~~~~~~~~~~~w~~ 521 (555)
..|..... .+..++-++-|+|+|||.+++-+.. ....++.+.++..-+++
T Consensus 127 ~~~~~~~~---~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~ 177 (194)
T 1dus_A 127 PPIRAGKE---VLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNV 177 (194)
T ss_dssp CCSTTCHH---HHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCC
T ss_pred CCcccchh---HHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcce
Confidence 87652111 3568899999999999999987544 33444555555553333
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=4.9e-05 Score=74.86 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=77.3
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----cccc---ch-hcccccCCCCCCCccchhhcccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGLI---GT-VHDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl~---g~-~~~~ce~~~typrtydl~h~~~~ 470 (555)
-.+|+|++||.|.++..|.+.+- .+|+-++-. ..+...-+ .|+- -+ ..|+ +.++.-+.+||+|.+.++
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~i~~~~~ 123 (267)
T 3kkz_A 47 KSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM-DDLPFRNEELDLIWSEGA 123 (267)
T ss_dssp TCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCCCCTTCEEEEEESSC
T ss_pred CCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcCh-hhCCCCCCCEEEEEEcCC
Confidence 45899999999999999987643 144444432 44444333 3442 22 2333 444433579999999998
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEecch---------------------hHHHHHHHHHhhcCccc
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS---------------------SIINYIRKFITALKWDG 521 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~---------------------~~~~~~~~~~~~~~w~~ 521 (555)
|..+ +...+|-++-|+|||||.+++.+.. ....++.+++....++.
T Consensus 124 ~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 190 (267)
T 3kkz_A 124 IYNI-----GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLP 190 (267)
T ss_dssp GGGT-----CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEE
T ss_pred ceec-----CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEE
Confidence 8743 4789999999999999999987521 12456667777777765
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.47 E-value=6.4e-05 Score=79.94 Aligned_cols=104 Identities=13% Similarity=-0.026 Sum_probs=68.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHc-C-CCeEEEEeCCCCC-CC-CCCCccEEEeccc-
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-G-IPSTLGVLGTKRL-PY-PSRSFELAHCSRC- 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~r-g-~~v~~~~~d~~~L-p~-~d~sFDlVv~s~~- 228 (555)
+.+|||+|||+|..+..|+.. .|+++|+++.++..+..+..... + .++.+..+|+..+ +. ++++||+|++.-.
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lDPPr 173 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPAR 173 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEECCEE
T ss_pred CCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEECCCC
Confidence 368999999999999999864 69999999998877775554330 3 3688999997664 32 2357999998411
Q ss_pred ------ccccccchHHHHHHHHhhcC-CCcEEEEEcCC
Q 008748 229 ------RIDWLQRDGILLLELDRLLR-PGGYFVYSSPE 259 (555)
Q Consensus 229 ------~l~~~~d~~~~L~el~RvLk-PGG~lvis~P~ 259 (555)
.+...++...-+.++.+.|. .+..+++-.++
T Consensus 174 r~~~~grv~~led~~P~l~~~~~~l~~~~~~~~vK~sP 211 (410)
T 3ll7_A 174 RSGADKRVYAIADCEPDLIPLATELLPFCSSILAKLSP 211 (410)
T ss_dssp C-----CCCCGGGEESCHHHHHHHHGGGSSEEEEEECT
T ss_pred cCCCCceEEehhhcCCCHHHHHHHHHhhCCcEEEEcCC
Confidence 11122222224566666443 44556665544
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=5.7e-05 Score=73.32 Aligned_cols=98 Identities=15% Similarity=0.248 Sum_probs=67.1
Q ss_pred CcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----ccc--cchhcccccCCCCCCCccchhhcccc
Q 008748 398 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGL--IGTVHDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 398 ~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl--~g~~~~~ce~~~typrtydl~h~~~~ 470 (555)
..-.+|+|++||.|.++.+|...-. +|+-++-. ..+...-+ .|+ +-+.+.=.+.++.-+.+||+|.+.++
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 96 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYA 96 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCc
Confidence 3456899999999999998876432 56666643 44444332 343 22222223445543479999999988
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+..+. +...+|-|+-|+|||||.+++.+
T Consensus 97 l~~~~----~~~~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 97 AHHFS----DVRKAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp GGGCS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhcc----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 76432 47899999999999999999864
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.46 E-value=7e-05 Score=73.35 Aligned_cols=97 Identities=16% Similarity=0.194 Sum_probs=65.9
Q ss_pred CcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----cccc--c-hhcccccCCCCCCCccchhhccc
Q 008748 398 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGLI--G-TVHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 398 ~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl~--g-~~~~~ce~~~typrtydl~h~~~ 469 (555)
..-.+|+|++||.|.++..|...-- .|+-++.. .-|...-+ +|+- - +..|. +.++.-+.+||+|.+..
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~-~~l~~~~~~fD~V~~~~ 111 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA-EQMPFTDERFHIVTCRI 111 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC--CCCSCTTCEEEEEEES
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH-HhCCCCCCCEEEEEEhh
Confidence 3456899999999999999876521 56666643 44544333 3432 1 12233 23332247999999998
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
++-.+. +...+|-|+-|+|||||.+++.+
T Consensus 112 ~l~~~~----d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 112 AAHHFP----NPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp CGGGCS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhHhcC----CHHHHHHHHHHHcCCCCEEEEEE
Confidence 876432 46799999999999999999864
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=97.45 E-value=7.6e-05 Score=73.41 Aligned_cols=97 Identities=24% Similarity=0.309 Sum_probs=64.5
Q ss_pred cceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----cccc---ch-hcccccCCCCCCCccchhhccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGLI---GT-VHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl~---g~-~~~~ce~~~typrtydl~h~~~ 469 (555)
.-.+|+|++||.|.++..|.... -.+|+-++-. ..+...-+ .|+- -+ ..|..+ ++.-+.+||+|.+.+
T Consensus 61 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~ 137 (273)
T 3bus_A 61 SGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMD-LPFEDASFDAVWALE 137 (273)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCTTCEEEEEEES
T ss_pred CCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcccc-CCCCCCCccEEEEec
Confidence 34589999999999998886431 1245555543 44444333 2542 12 223322 332246999999999
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+|..+. +...+|-|+-|+|+|||.+++.+
T Consensus 138 ~l~~~~----~~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 138 SLHHMP----DRGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp CTTTSS----CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhhCC----CHHHHHHHHHHHcCCCeEEEEEE
Confidence 887432 35889999999999999999875
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00024 Score=68.33 Aligned_cols=114 Identities=14% Similarity=0.157 Sum_probs=77.7
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cccc----hhcccccCCCCCCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GLIG----TVHDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl~g----~~~~~ce~~~typrtydl~h~~~~~ 471 (555)
.+|+|++||.|.++..|.... .+|+-++-. ..+...-++ |+.. +-.|..+ ++ .+.+||+|.+.++|
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~~l 142 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPE---RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFT-WR-PTELFDLIFDYVFF 142 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTT---EEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTT-CC-CSSCEEEEEEESST
T ss_pred CCEEEeCCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhc-CC-CCCCeeEEEEChhh
Confidence 489999999999999997743 245555543 444443333 3222 2233333 22 34589999999888
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEecch-----------hHHHHHHHHHhhcCccc
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS-----------SIINYIRKFITALKWDG 521 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~-----------~~~~~~~~~~~~~~w~~ 521 (555)
..+. .-....+|-++-|+|+|||.+++-+.. -..+++++++..-.|+.
T Consensus 143 ~~~~--~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 201 (235)
T 3lcc_A 143 CAIE--PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKA 201 (235)
T ss_dssp TTSC--GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEE
T ss_pred hcCC--HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeE
Confidence 7442 224678999999999999999985321 13678899999888886
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00012 Score=69.89 Aligned_cols=110 Identities=17% Similarity=0.195 Sum_probs=75.3
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCC-CCchhHHhhccccchhcccccCCCCCCCccchhhccccccccccCC
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERG 478 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~-~~~l~~i~~rgl~g~~~~~ce~~~typrtydl~h~~~~~s~~~~~~ 478 (555)
-.+|+|++||.|.++..|... +-++. +..+...-++++--+..|. +.++.-+.+||+|.+.+++..+.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~--- 116 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGVFVLKGTA-ENLPLKDESFDFALMVTTICFVD--- 116 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTCEEEECBT-TBCCSCTTCEEEEEEESCGGGSS---
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhcCCEEEEccc-ccCCCCCCCeeEEEEcchHhhcc---
Confidence 358999999999999999876 22332 2445555555432222232 33443346999999999887442
Q ss_pred CChhhhhhhhcccccCCceEEEecch------------------------hHHHHHHHHHhhcCccc
Q 008748 479 CSFEDLLIEMDRMLRPEGFVIIRDKS------------------------SIINYIRKFITALKWDG 521 (555)
Q Consensus 479 c~~~~~~~e~drilrp~g~~i~rd~~------------------------~~~~~~~~~~~~~~w~~ 521 (555)
+...+|-++-|+|+|||.+++.+.. -..+++++++....++.
T Consensus 117 -~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~ 182 (219)
T 1vlm_A 117 -DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEE 182 (219)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEE
T ss_pred -CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeE
Confidence 3678999999999999999986321 13467777777777775
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00018 Score=69.12 Aligned_cols=93 Identities=18% Similarity=0.305 Sum_probs=62.0
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cc-cch-hcccccCCCCCCCccchhhccc-ccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GL-IGT-VHDWCESFSTYPRTYDLLHAWK-VFS 472 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl-~g~-~~~~ce~~~typrtydl~h~~~-~~s 472 (555)
.+|+|++||.|.++..|... .+|+-++.. ..+...-++ |. +-. -.|..+ ++ .+.+||+|-+.. +|.
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRE-LE-LPEPVDAITILCDSLN 108 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGG-CC-CSSCEEEEEECTTGGG
T ss_pred CeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhh-cC-CCCCcCEEEEeCCchh
Confidence 68999999999999999876 366666643 444444333 21 111 123222 22 468999998765 665
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEE
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVII 500 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~ 500 (555)
.+. ..-....+|-++-|+|+|||.+++
T Consensus 109 ~~~-~~~~~~~~l~~~~~~L~pgG~l~~ 135 (243)
T 3d2l_A 109 YLQ-TEADVKQTFDSAARLLTDGGKLLF 135 (243)
T ss_dssp GCC-SHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hcC-CHHHHHHHHHHHHHhcCCCeEEEE
Confidence 331 112466789999999999999997
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0002 Score=72.18 Aligned_cols=135 Identities=13% Similarity=0.054 Sum_probs=85.2
Q ss_pred eeEeeccCCcchhhhhcc--CCCceEEEecccCCC-CchhHHh----hcccc---ch-hcccccCCCCCCCccchhhccc
Q 008748 401 RNVMDMNSNLGGFAAALK--DKDVWVMNVAPVRMS-ARLKIIY----DRGLI---GT-VHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~--~~~~wvmnv~p~~~~-~~l~~i~----~rgl~---g~-~~~~ce~~~typrtydl~h~~~ 469 (555)
.+|+|++||.|.++.+|. ..|-. +|+-++-. ..+...- +.|+- -+ -.|..+ ++ ++.+||+|.+.+
T Consensus 120 ~~vLDiGcG~G~~~~~la~~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~ 195 (305)
T 3ocj_A 120 CVVASVPCGWMSELLALDYSACPGV--QLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK-LD-TREGYDLLTSNG 195 (305)
T ss_dssp CEEEETTCTTCHHHHTSCCTTCTTC--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGG-CC-CCSCEEEEECCS
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCC--eEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhc-CC-ccCCeEEEEECC
Confidence 479999999999999983 33332 45555542 4444333 23332 12 233333 33 458999999988
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEecch---------------------------------------hHHHHH
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS---------------------------------------SIINYI 510 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~---------------------------------------~~~~~~ 510 (555)
++..+... -....++-|+-|+|||||.+++.+-. ...+++
T Consensus 196 ~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (305)
T 3ocj_A 196 LNIYEPDD-ARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT 274 (305)
T ss_dssp SGGGCCCH-HHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred hhhhcCCH-HHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence 77633211 11234799999999999999988711 247788
Q ss_pred HHHHhhcCccceecccccccccCCCCCceEEEEEec
Q 008748 511 RKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKK 546 (555)
Q Consensus 511 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k~ 546 (555)
+++++.-.++.. ...+ . ....-..++++|+
T Consensus 275 ~~~l~~aGF~~v-~~~~-~----~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 275 RAQLEEAGFTDL-RFED-D----RARLFPTVIARKP 304 (305)
T ss_dssp HHHHHHTTCEEE-EEEC-C----TTSSSCEEEEECC
T ss_pred HHHHHHCCCEEE-EEEc-c----cCceeeEEEEecC
Confidence 899998888862 2211 1 1234567888884
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00014 Score=73.15 Aligned_cols=100 Identities=16% Similarity=0.114 Sum_probs=59.5
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc-
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID- 231 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~- 231 (555)
.+|||+|||+|.|+.+++.. .+.++|+.......+. .. ...+.++.....++....++.+.+|+|+|.. +.+
T Consensus 92 ~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi-~~-~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDm-Apns 168 (282)
T 3gcz_A 92 GIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPI-MR-TTLGWNLIRFKDKTDVFNMEVIPGDTLLCDI-GESS 168 (282)
T ss_dssp EEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCC-CC-CBTTGGGEEEECSCCGGGSCCCCCSEEEECC-CCCC
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccc-cc-ccCCCceEEeeCCcchhhcCCCCcCEEEecC-ccCC
Confidence 58999999999999988753 4556666543211110 00 0012233333333333345567899999854 344
Q ss_pred ---cccchH--HHHHHHHhhcCCC--cEEEEEcCC
Q 008748 232 ---WLQRDG--ILLLELDRLLRPG--GYFVYSSPE 259 (555)
Q Consensus 232 ---~~~d~~--~~L~el~RvLkPG--G~lvis~P~ 259 (555)
+.+... .+|.-+.++|+|| |.|++-.-.
T Consensus 169 G~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 169 PSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred CChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 222222 2566678899999 999986643
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00016 Score=68.15 Aligned_cols=95 Identities=21% Similarity=0.315 Sum_probs=63.8
Q ss_pred cceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhcc-ccchhcccccCCCCCCCccchhhcccccccccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRG-LIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 476 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rg-l~g~~~~~ce~~~typrtydl~h~~~~~s~~~~ 476 (555)
.-.+|+|++||.|.++..| .. -+|+-++.. ..+...-++. -+-+.+.-.+.++.-+.+||+|.+.+++..+.
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~- 109 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-PY----PQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVE- 109 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-CC----SEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS-
T ss_pred CCCeEEEECCCCCHhHHhC-CC----CeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcC-
Confidence 3458999999999999998 32 145555543 4444444441 11222222233443346999999998887442
Q ss_pred CCCChhhhhhhhcccccCCceEEEec
Q 008748 477 RGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 477 ~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+...+|-|+-|+|+|||.+++.+
T Consensus 110 ---~~~~~l~~~~~~L~pgG~l~i~~ 132 (211)
T 2gs9_A 110 ---DVERVLLEARRVLRPGGALVVGV 132 (211)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCCEEEEEe
Confidence 47889999999999999999874
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00013 Score=71.92 Aligned_cols=96 Identities=17% Similarity=0.258 Sum_probs=64.0
Q ss_pred cceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhccccchhcccccCCCCCCCccchhhccccccccccC
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEER 477 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl~g~~~~~ce~~~typrtydl~h~~~~~s~~~~~ 477 (555)
.-.+|+|++||.|.++..|.+... +|+-++-. ..+...-++.-+-..+.=.+.++.-+.+||+||+.+++..+
T Consensus 34 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~--- 107 (261)
T 3ege_A 34 KGSVIADIGAGTGGYSVALANQGL---FVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHF--- 107 (261)
T ss_dssp TTCEEEEETCTTSHHHHHHHTTTC---EEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCGGGC---
T ss_pred CCCEEEEEcCcccHHHHHHHhCCC---EEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchHhhc---
Confidence 446899999999999999987432 44444432 22322222221222222234455445799999999988744
Q ss_pred CCChhhhhhhhcccccCCceEEEec
Q 008748 478 GCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 478 ~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
-+...+|-|+-|+|| ||++++-+
T Consensus 108 -~~~~~~l~~~~~~Lk-gG~~~~~~ 130 (261)
T 3ege_A 108 -SHLEKSFQEMQRIIR-DGTIVLLT 130 (261)
T ss_dssp -SSHHHHHHHHHHHBC-SSCEEEEE
T ss_pred -cCHHHHHHHHHHHhC-CcEEEEEE
Confidence 247899999999999 99887754
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.40 E-value=7.4e-05 Score=70.91 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=85.4
Q ss_pred ceeEeeccCCcchhhhhccCC--CceEEEecccCCC-CchhHHhhc----cc--cc-hhcccccCCCCCCCccchhhccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS-ARLKIIYDR----GL--IG-TVHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~~-~~l~~i~~r----gl--~g-~~~~~ce~~~typrtydl~h~~~ 469 (555)
-.+|+|++||.|.++.+|... |-. .|+-++.. ..+...-++ |+ +- +..|. +.++.-..+||+|.+.+
T Consensus 38 ~~~vLDiG~G~G~~~~~l~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~ 114 (219)
T 3dh0_A 38 GMTVLDVGTGAGFYLPYLSKMVGEKG--KVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEE-NKIPLPDNTVDFIFMAF 114 (219)
T ss_dssp TCEEEESSCTTCTTHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBT-TBCSSCSSCEEEEEEES
T ss_pred CCEEEEEecCCCHHHHHHHHHhCCCc--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeccc-ccCCCCCCCeeEEEeeh
Confidence 357999999999999988643 211 34444432 444433322 32 11 22233 22333346899999999
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEecch-------------hHHHHHHHHHhhcCccceecccccccccCCCC
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS-------------SIINYIRKFITALKWDGWLSEVEPRIDALSSS 536 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~-------------~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 536 (555)
+|..+. +...+|-|+-|+|+|||.+++.+-. ...+++++++....++.. ... . . ..
T Consensus 115 ~l~~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~-~~~---~--~-~~ 183 (219)
T 3dh0_A 115 TFHELS----EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVG-RVV---E--V-GK 183 (219)
T ss_dssp CGGGCS----SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEE-EEE---E--E-TT
T ss_pred hhhhcC----CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEE-EEE---e--e-CC
Confidence 887542 3688999999999999999997521 236788899998889862 111 1 1 23
Q ss_pred CceEEEEEec
Q 008748 537 EERVLIAKKK 546 (555)
Q Consensus 537 ~~~~l~~~k~ 546 (555)
...+++++|.
T Consensus 184 ~~~~~~~~k~ 193 (219)
T 3dh0_A 184 YCFGVYAMIV 193 (219)
T ss_dssp TEEEEEEECC
T ss_pred ceEEEEEEec
Confidence 4567777775
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0001 Score=73.18 Aligned_cols=112 Identities=12% Similarity=0.147 Sum_probs=72.4
Q ss_pred cceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc--cccchhcccccCCCCCCCccchhhccccccccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR--GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 475 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r--gl~g~~~~~ce~~~typrtydl~h~~~~~s~~~ 475 (555)
.-.+|+|++||.|.++.+|..... +|+-++-. ..+...-++ ++-=+..|. +.++ ++.+||+|++..+|..+.
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~ 131 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNYPHLHFDVADA-RNFR-VDKPLDAVFSNAMLHWVK 131 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSCEEECCT-TTCC-CSSCEEEEEEESCGGGCS
T ss_pred CCCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhCCCCEEEECCh-hhCC-cCCCcCEEEEcchhhhCc
Confidence 345899999999999999976322 45555543 444444443 221122233 3344 478999999998887432
Q ss_pred cCCCChhhhhhhhcccccCCceEEEecc-----hhHHHHHHHHHhhcCc
Q 008748 476 ERGCSFEDLLIEMDRMLRPEGFVIIRDK-----SSIINYIRKFITALKW 519 (555)
Q Consensus 476 ~~~c~~~~~~~e~drilrp~g~~i~rd~-----~~~~~~~~~~~~~~~w 519 (555)
+...+|-|+-|+|||||++++... ......+..+.....|
T Consensus 132 ----d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (279)
T 3ccf_A 132 ----EPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGI 176 (279)
T ss_dssp ----CHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTC
T ss_pred ----CHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCC
Confidence 477899999999999999998632 2344444444444444
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00043 Score=67.29 Aligned_cols=138 Identities=17% Similarity=0.168 Sum_probs=83.4
Q ss_pred ceeEeeccCCcchhhhhccC-CCceEEEecccCCC-CchhHHh----hccc--cchhcccccCCCC---CCCccchhhcc
Q 008748 400 FRNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMS-ARLKIIY----DRGL--IGTVHDWCESFST---YPRTYDLLHAW 468 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~-~~~wvmnv~p~~~~-~~l~~i~----~rgl--~g~~~~~ce~~~t---yprtydl~h~~ 468 (555)
-.+|+|++||.|.++..|.. .+-. .|+-++.. ..+.+.- ..|+ |-+++.=.+.++. .+.+||+|.+.
T Consensus 71 ~~~vLDiG~G~G~~~~~la~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKICFPHL--HVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTC--EEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 35899999999988877762 2222 35555543 3333322 2354 3333322233332 35789999976
Q ss_pred ccccccccCCCChhhhhhhhcccccCCceEEEecc---hhHHHHHHHHHhhcCccceec-ccccccccCCCCCceEEEEE
Q 008748 469 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK---SSIINYIRKFITALKWDGWLS-EVEPRIDALSSSEERVLIAK 544 (555)
Q Consensus 469 ~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~---~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~~~~~~~l~~~ 544 (555)
.+ .++..++-++-|+|+|||.+++-+. .+.+.++.+.++...++.... .+. -|.......+++.+
T Consensus 149 ~~--------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~---~~~~~~~~~l~~~~ 217 (240)
T 1xdz_A 149 AV--------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFK---LPIEESDRNIMVIR 217 (240)
T ss_dssp CC--------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEE---CTTTCCEEEEEEEE
T ss_pred cc--------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEe---cCCCCCceEEEEEE
Confidence 63 3478899999999999999998653 344566667777777765211 111 12222345677778
Q ss_pred eccccc
Q 008748 545 KKLWDE 550 (555)
Q Consensus 545 k~~w~~ 550 (555)
|.=.++
T Consensus 218 k~~~~~ 223 (240)
T 1xdz_A 218 KIKNTP 223 (240)
T ss_dssp ECSCCC
T ss_pred ecCCCC
Confidence 765444
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00013 Score=71.71 Aligned_cols=98 Identities=19% Similarity=0.296 Sum_probs=65.0
Q ss_pred cceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhccccchhcccccCCCCCCCccchhhccccccccccC
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEER 477 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl~g~~~~~ce~~~typrtydl~h~~~~~s~~~~~ 477 (555)
.-.+|+|++||.|.++..|..... +|+-++.. ..+...-++..--....=.+.++.-+.+||+|-+.+.+-.+..+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~ 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc
Confidence 345899999999999999987642 55556543 55555555543101111122234224689999987654323222
Q ss_pred CCChhhhhhhhcccccCCceEEEec
Q 008748 478 GCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 478 ~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
...+|-|+-|+|+|||.+++..
T Consensus 131 ---~~~~l~~~~~~LkpgG~l~~~~ 152 (260)
T 2avn_A 131 ---KDKAFSEIRRVLVPDGLLIATV 152 (260)
T ss_dssp ---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---HHHHHHHHHHHcCCCeEEEEEe
Confidence 7899999999999999999864
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00053 Score=66.03 Aligned_cols=90 Identities=8% Similarity=-0.045 Sum_probs=61.5
Q ss_pred CEEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC----CeEEEEeCCCC---------------CC
Q 008748 157 RNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI----PSTLGVLGTKR---------------LP 214 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~rg~----~v~~~~~d~~~---------------Lp 214 (555)
++|||+||| +.+..|++ ..|+++|.++.....++..++ +.+. ++.+..+++.. ++
T Consensus 32 ~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~-~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~ 108 (202)
T 3cvo_A 32 EVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLA-ANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYP 108 (202)
T ss_dssp SEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHH-HSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTT
T ss_pred CEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCCCceEEEEeCchhhhcccccccchhhhhHH
Confidence 589999985 56666664 478899998877766654444 3343 57888888543 22
Q ss_pred --------C-CCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEE
Q 008748 215 --------Y-PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 255 (555)
Q Consensus 215 --------~-~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvi 255 (555)
. ..++||+|+.-.. .....+..+.+.|+|||++++
T Consensus 109 ~~~~~i~~~~~~~~fDlIfIDg~------k~~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 109 DYPLAVWRTEGFRHPDVVLVDGR------FRVGCALATAFSITRPVTLLF 152 (202)
T ss_dssp HHHHGGGGCTTCCCCSEEEECSS------SHHHHHHHHHHHCSSCEEEEE
T ss_pred HHhhhhhccccCCCCCEEEEeCC------CchhHHHHHHHhcCCCeEEEE
Confidence 1 2368999996541 112466677899999999976
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=6.1e-05 Score=76.92 Aligned_cols=70 Identities=13% Similarity=0.122 Sum_probs=49.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--CC---CCCccEEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YP---SRSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--~~---d~sFDlVv~s 226 (555)
..+|||+|||+|.++..++++ .|+++|+++.++..+..+.. ..+.++.+..+|+..++ +. .++||.|++.
T Consensus 27 g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~-~~g~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl~D 105 (301)
T 1m6y_A 27 EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLK-EFSDRVSLFKVSYREADFLLKTLGIEKVDGILMD 105 (301)
T ss_dssp TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTG-GGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred CCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHhcCCCCCCEEEEc
Confidence 358999999999999998863 58888888888766653332 22356788888876664 11 1468887753
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00032 Score=63.99 Aligned_cols=114 Identities=11% Similarity=0.077 Sum_probs=76.5
Q ss_pred cceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhc----ccc---chhcccccCCCCCCCccchhhccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR----GLI---GTVHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~r----gl~---g~~~~~ce~~~typrtydl~h~~~ 469 (555)
.-..|+|++||.|.++..|... |- ..|+-++-. ..+...-++ |+- -+..|..+.++..+.+||+|.+.+
T Consensus 25 ~~~~vldiG~G~G~~~~~l~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~ 102 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRSTPQ--TTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGG 102 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHHTTSSS--EEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC
T ss_pred CCCeEEEeCCCCCHHHHHHHHHCCC--CeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECC
Confidence 3468999999999999988665 32 245555543 444443332 432 222344455555447899999877
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEecc-hhHHHHHHHHHhhcCccce
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWDGW 522 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~-~~~~~~~~~~~~~~~w~~~ 522 (555)
.+.. ..++-++-|+|+|||.+++.+. .+-...+.+++....+++.
T Consensus 103 ~~~~--------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (178)
T 3hm2_A 103 GLTA--------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTIS 148 (178)
T ss_dssp -TTC--------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEE
T ss_pred cccH--------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeE
Confidence 6652 6789999999999999998753 4556677777777766653
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00038 Score=68.12 Aligned_cols=134 Identities=16% Similarity=0.145 Sum_probs=82.2
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCC-CCchhHHhhcc-ccc-----hhcccc-cCCCCCCCccchhhcccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG-LIG-----TVHDWC-ESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~-~~~l~~i~~rg-l~g-----~~~~~c-e~~~typrtydl~h~~~~~s 472 (555)
..|+|++||.|+|+..|.....- .|+-+|- ++.|.....+. -++ -+...+ +.++. .-+|..-.+-+|+
T Consensus 39 ~~VLDiGcGtG~~t~~la~~g~~--~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~D~v~~ 114 (232)
T 3opn_A 39 KTCLDIGSSTGGFTDVMLQNGAK--LVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ--GRPSFTSIDVSFI 114 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCS--EEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--CCCSEEEECCSSS
T ss_pred CEEEEEccCCCHHHHHHHhcCCC--EEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--CCCCEEEEEEEhh
Confidence 47999999999999888765422 4566664 35555533321 011 111112 33322 0135555555555
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEEe-------------------cc---hhHHHHHHHHHhhcCccceeccccccc
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVIIR-------------------DK---SSIINYIRKFITALKWDGWLSEVEPRI 530 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~r-------------------d~---~~~~~~~~~~~~~~~w~~~~~~~~~~~ 530 (555)
. +..+|-|+-|+|+|||.+++- |. ...++++.+++....|++......+-.
T Consensus 115 ~-------l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~ 187 (232)
T 3opn_A 115 S-------LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIK 187 (232)
T ss_dssp C-------GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSC
T ss_pred h-------HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCC
Confidence 2 478999999999999999874 11 135678888898888987544433333
Q ss_pred ccCCCCCceEEEEEec
Q 008748 531 DALSSSEERVLIAKKK 546 (555)
Q Consensus 531 ~~~~~~~~~~l~~~k~ 546 (555)
++. .+-|-++.++|+
T Consensus 188 g~~-gn~e~l~~~~~~ 202 (232)
T 3opn_A 188 GGA-GNVEFLVHLLKD 202 (232)
T ss_dssp BTT-TBCCEEEEEEES
T ss_pred CCC-CCHHHHHHHhhc
Confidence 333 356778888874
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00023 Score=65.82 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=70.5
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHh----hccc--cchhcccccCCCCC-CCccchhhcc-ccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY----DRGL--IGTVHDWCESFSTY-PRTYDLLHAW-KVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~----~rgl--~g~~~~~ce~~~ty-prtydl~h~~-~~~ 471 (555)
..|+|++||.|.++..|.+. .-.|+-++-. .-+...- +.|+ +-+.++-.+.+..+ +.+||+|..+ +.+
T Consensus 24 ~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~ 100 (185)
T 3mti_A 24 SIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYL 100 (185)
T ss_dssp CEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC--
T ss_pred CEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCC
Confidence 47999999999999999876 3356666643 4444332 2354 33444444553323 5689999655 322
Q ss_pred cccc----cCCCChhhhhhhhcccccCCceEEEecc------hhHHHHHHHHHhhcC---ccc
Q 008748 472 SEIE----ERGCSFEDLLIEMDRMLRPEGFVIIRDK------SSIINYIRKFITALK---WDG 521 (555)
Q Consensus 472 s~~~----~~~c~~~~~~~e~drilrp~g~~i~rd~------~~~~~~~~~~~~~~~---w~~ 521 (555)
.... ...-....+|-|+-|+|+|||.+++-.- .+....+.+.+..+. |.+
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (185)
T 3mti_A 101 PSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTA 163 (185)
T ss_dssp ---------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEE
T ss_pred CCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEE
Confidence 2100 0001134567899999999999987532 234456666666665 655
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00025 Score=80.78 Aligned_cols=106 Identities=14% Similarity=0.102 Sum_probs=68.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC-------CCccccCChhhhhHHHHHHHHH-----cCCCe-EEEEeCCCCC-CCCCCCcc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-------DIIAMSLAPNDVHENQIQFALE-----RGIPS-TLGVLGTKRL-PYPSRSFE 221 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-------~V~~vdis~~dls~a~i~~A~~-----rg~~v-~~~~~d~~~L-p~~d~sFD 221 (555)
..+|||.|||+|.++..++.. .+.|+|+++..+..+..+.... .+... .+...|+... +...+.||
T Consensus 322 g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kFD 401 (878)
T 3s1s_A 322 DEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVS 401 (878)
T ss_dssp TCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTEE
T ss_pred CCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCCC
Confidence 468999999999999888753 3678888887766552222211 12222 4444444432 23456899
Q ss_pred EEEecccccc-ccc--------------------------c-hHHHHHHHHhhcCCCcEEEEEcCCCC
Q 008748 222 LAHCSRCRID-WLQ--------------------------R-DGILLLELDRLLRPGGYFVYSSPEAY 261 (555)
Q Consensus 222 lVv~s~~~l~-~~~--------------------------d-~~~~L~el~RvLkPGG~lvis~P~~~ 261 (555)
+|+++--... +.. + ...++..+.+.|+|||+++++.|..+
T Consensus 402 VVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~ 469 (878)
T 3s1s_A 402 VVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQY 469 (878)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHH
T ss_pred EEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHH
Confidence 9998532111 000 0 13368889999999999999999864
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00067 Score=68.71 Aligned_cols=102 Identities=16% Similarity=0.191 Sum_probs=59.7
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
+..+|||+||++|.|+..+++. .|.++|+...+...... ....+.++.....+.....+..+.+|+|+|.. +.
T Consensus 81 ~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~--~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~-AP 157 (300)
T 3eld_A 81 ITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH--MQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDI-GE 157 (300)
T ss_dssp CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC--CCBTTGGGEEEECSCCTTTSCCCCCSEEEECC-CC
T ss_pred CCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc--ccccCCceEEeecCceeeecCCCCcCEEeecC-cC
Confidence 3469999999999999999974 35566665422100000 00001122223333333334567899999854 34
Q ss_pred c----cccch--HHHHHHHHhhcCCC-cEEEEEcCC
Q 008748 231 D----WLQRD--GILLLELDRLLRPG-GYFVYSSPE 259 (555)
Q Consensus 231 ~----~~~d~--~~~L~el~RvLkPG-G~lvis~P~ 259 (555)
+ ..+.. ..+|.-+.++|+|| |.|++-.-.
T Consensus 158 nsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 158 SSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 3 11111 22566678899999 999997543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.33 E-value=9.9e-05 Score=74.07 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=63.0
Q ss_pred cceeEeeccCCcchhhhhccC--CCceEEEecccCCC-CchhHHhhc-----cccc---hhcccccCCCCCC------Cc
Q 008748 399 TFRNVMDMNSNLGGFAAALKD--KDVWVMNVAPVRMS-ARLKIIYDR-----GLIG---TVHDWCESFSTYP------RT 461 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~--~~~wvmnv~p~~~~-~~l~~i~~r-----gl~g---~~~~~ce~~~typ------rt 461 (555)
.-.+|+|++||.|.++..|.. .+. -+|+-++-. ..+...-++ |+.. ..+.=.+.++.-. .+
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 113 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPF--EQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQK 113 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCC--SEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCC--CEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCC
Confidence 457899999999999999983 222 245555543 444444333 2222 1111112222112 69
Q ss_pred cchhhccccccccccCCCChhhhhhhhcccccCCceEEE
Q 008748 462 YDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 500 (555)
Q Consensus 462 ydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~ 500 (555)
||+|++..++..+ +...+|-|+-|+|||||.+++
T Consensus 114 fD~V~~~~~l~~~-----~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 114 IDMITAVECAHWF-----DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp EEEEEEESCGGGS-----CHHHHHHHHHHHEEEEEEEEE
T ss_pred eeEEeHhhHHHHh-----CHHHHHHHHHHhcCCCcEEEE
Confidence 9999999988743 589999999999999999998
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.33 E-value=5.4e-05 Score=75.29 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=66.5
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cc---cchhcccccCCC-CCCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GL---IGTVHDWCESFS-TYPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl---~g~~~~~ce~~~-typrtydl~h~~~~~ 471 (555)
..|+|++||.|.++..|..... .|+-++-. ..+...-++ |+ +-+++.=.+.++ ..+.+||+|.+.++|
T Consensus 70 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 146 (285)
T 4htf_A 70 LRVLDAGGGEGQTAIKMAERGH---QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL 146 (285)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred CEEEEeCCcchHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence 5799999999999999987632 55555543 455544333 44 222222223333 345799999999998
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
..+. +...+|-|+-|+|+|||.+++.+
T Consensus 147 ~~~~----~~~~~l~~~~~~LkpgG~l~~~~ 173 (285)
T 4htf_A 147 EWVA----DPRSVLQTLWSVLRPGGVLSLMF 173 (285)
T ss_dssp GGCS----CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hccc----CHHHHHHHHHHHcCCCeEEEEEE
Confidence 7542 36889999999999999999875
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00013 Score=71.12 Aligned_cols=100 Identities=16% Similarity=0.207 Sum_probs=68.5
Q ss_pred cCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhcc----ccchhcccccCCCCCCCccchhhccc
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRG----LIGTVHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rg----l~g~~~~~ce~~~typrtydl~h~~~ 469 (555)
+....=.+|+|++||.|.++..|.....- +|+-++-. ..+...-++. +--+..|. +.++.-+.+||+|.+.+
T Consensus 40 ~~~~~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~ 116 (253)
T 3g5l_A 40 LPDFNQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAI-EDIAIEPDAYNVVLSSL 116 (253)
T ss_dssp CCCCTTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCG-GGCCCCTTCEEEEEEES
T ss_pred hhccCCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcch-hhCCCCCCCeEEEEEch
Confidence 44434578999999999999998765321 45555543 4455444442 11122232 33443357999999999
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
+|..+ -+...+|-|+-|+|+|||.+++.
T Consensus 117 ~l~~~----~~~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 117 ALHYI----ASFDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp CGGGC----SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhh----hhHHHHHHHHHHHcCCCcEEEEE
Confidence 88754 24789999999999999999996
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=6.4e-05 Score=75.38 Aligned_cols=97 Identities=11% Similarity=0.203 Sum_probs=59.4
Q ss_pred eeEeeccCCcchhhhh----ccC-CCceEEEecccCCC-CchhHHhhc-----cccchhcccc----cCCC------CCC
Q 008748 401 RNVMDMNSNLGGFAAA----LKD-KDVWVMNVAPVRMS-ARLKIIYDR-----GLIGTVHDWC----ESFS------TYP 459 (555)
Q Consensus 401 rn~~dm~~~~g~faa~----l~~-~~~wvmnv~p~~~~-~~l~~i~~r-----gl~g~~~~~c----e~~~------typ 459 (555)
..|+|++||.|.++.. |.. .|-+...++-++.+ .-|...-+| |+-.+--.|. +.+. .-+
T Consensus 54 ~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 133 (292)
T 2aot_A 54 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKEL 133 (292)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTCC
T ss_pred CeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccCC
Confidence 4799999999986543 222 13222233555543 444443333 3322111121 1121 114
Q ss_pred CccchhhccccccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 460 RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 460 rtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
.+||+|++..++-.+. +....|-||-|+|||||.+++-
T Consensus 134 ~~fD~V~~~~~l~~~~----d~~~~l~~~~r~LkpgG~l~i~ 171 (292)
T 2aot_A 134 QKWDFIHMIQMLYYVK----DIPATLKFFHSLLGTNAKMLII 171 (292)
T ss_dssp CCEEEEEEESCGGGCS----CHHHHHHHHHHTEEEEEEEEEE
T ss_pred CceeEEEEeeeeeecC----CHHHHHHHHHHHcCCCcEEEEE
Confidence 7999999999887442 3788999999999999999985
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00014 Score=72.60 Aligned_cols=100 Identities=12% Similarity=0.084 Sum_probs=65.2
Q ss_pred CcceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhc----cc-cc-hhcccccCCCCCCCccchhhccc
Q 008748 398 NTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR----GL-IG-TVHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 398 ~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~r----gl-~g-~~~~~ce~~~typrtydl~h~~~ 469 (555)
..-.+|+|++||.|.++..|.+. |- ...|+-++-. ..+...-++ |+ +- +..|.. .++ ++.+||+||+..
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~v~~~~ 97 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPE-GSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT-EIE-LNDKYDIAICHA 97 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCT-TCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTT-TCC-CSSCEEEEEEES
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchh-hcC-cCCCeeEEEECC
Confidence 34568999999999999999865 21 0133334432 333322221 21 11 222333 333 478999999999
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEecch
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 504 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~ 504 (555)
++..+. +...+|-++-|+|+|||++++.+..
T Consensus 98 ~l~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 98 FLLHMT----TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CGGGCS----SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhhcCC----CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 887442 3679999999999999999987644
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0001 Score=70.65 Aligned_cols=117 Identities=12% Similarity=0.147 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhcc--ccchhcccccC
Q 008748 378 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRG--LIGTVHDWCES 454 (555)
Q Consensus 378 ~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rg--l~g~~~~~ce~ 454 (555)
..|....+.+...+...+ ..-.+|+|++||.|.++..|.+.-. +|+-++.. ..+...-++. +--+..|.. .
T Consensus 21 ~~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~-~ 94 (239)
T 3bxo_A 21 KDYAAEASDIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMR-D 94 (239)
T ss_dssp CCHHHHHHHHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTT-T
T ss_pred hhHHHHHHHHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHH-H
Confidence 567766666555554333 2346899999999999998875421 45555543 4455444441 111222332 2
Q ss_pred CCCCCCccchhh-ccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 455 FSTYPRTYDLLH-AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 455 ~~typrtydl~h-~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
++. +.+||+|. +.++|..+.. .-....+|-++-|+|+|||.+++.+
T Consensus 95 ~~~-~~~~D~v~~~~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 95 FRL-GRKFSAVVSMFSSVGYLKT-TEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp CCC-SSCEEEEEECTTGGGGCCS-HHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred ccc-CCCCcEEEEcCchHhhcCC-HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 333 78999999 4546654321 1236788999999999999999974
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00015 Score=69.75 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=65.5
Q ss_pred cceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhcc----ccchhcccccCCCCCCCccchhhccccccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRG----LIGTVHDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rg----l~g~~~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
.-.+|+|++||.|.++..|.....- +|+-++-. ..+...-++. +--+..|.. .++.-+.+||+|.+.++|..
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~~ 119 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPDTGITYERADLD-KLHLPQDSFDLAYSSLALHY 119 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCSSSEEEEECCGG-GCCCCTTCEEEEEEESCGGG
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhcccCCceEEEcChh-hccCCCCCceEEEEeccccc
Confidence 4468999999999999998765321 44444432 4444444432 211222333 34433579999999988874
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEec
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+. +...+|-++-|+|+|||.+++.+
T Consensus 120 ~~----~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 120 VE----DVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp CS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc----hHHHHHHHHHHhcCcCcEEEEEe
Confidence 42 47889999999999999999865
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0012 Score=66.75 Aligned_cols=133 Identities=12% Similarity=0.126 Sum_probs=80.1
Q ss_pred CCEEEEECCCCcHHHHHHh---------cCCCccccCChh--------------------------hhhHHHHHHHHHcC
Q 008748 156 IRNVLDVGCGVASFGAYLL---------SHDIIAMSLAPN--------------------------DVHENQIQFALERG 200 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La---------~~~V~~vdis~~--------------------------dls~a~i~~A~~rg 200 (555)
++.|||+|+..|..+..|+ ++.|+++|.... .+..+..++ .+.+
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~-~~~g 185 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNF-RNYD 185 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHH-HHTT
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHH-HHcC
Confidence 4689999999998777664 346777775321 111122222 2333
Q ss_pred ---CCeEEEEeCCC-CCC-CCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHH
Q 008748 201 ---IPSTLGVLGTK-RLP-YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMY 275 (555)
Q Consensus 201 ---~~v~~~~~d~~-~Lp-~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~ 275 (555)
.++.++.+++. .+| +++++||+|+.-.. . + ......|..+...|+|||++++-.-.. .+...+ .+.
T Consensus 186 l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD-~-y-~~~~~~Le~~~p~L~pGGiIv~DD~~~---~~G~~~---Av~ 256 (282)
T 2wk1_A 186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD-L-Y-ESTWDTLTNLYPKVSVGGYVIVDDYMM---CPPCKD---AVD 256 (282)
T ss_dssp CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC-S-H-HHHHHHHHHHGGGEEEEEEEEESSCTT---CHHHHH---HHH
T ss_pred CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC-c-c-ccHHHHHHHHHhhcCCCEEEEEcCCCC---CHHHHH---HHH
Confidence 45889999853 344 44578999995432 1 1 223457999999999999999855321 233333 444
Q ss_pred HHHHhcCcE--EEEEeeceEEeecC
Q 008748 276 DLLKSMCWK--IVSKKDQTVIWAKP 298 (555)
Q Consensus 276 ~l~~~~gw~--vv~~~~~~~iw~KP 298 (555)
++.+..++. +........+|+|+
T Consensus 257 Ef~~~~~i~~~i~~~~~~~v~~rk~ 281 (282)
T 2wk1_A 257 EYRAKFDIADELITIDRDGVYWQRT 281 (282)
T ss_dssp HHHHHTTCCSCCEECSSSCEEEECC
T ss_pred HHHHhcCCceEEEEecCEEEEEEeC
Confidence 455555543 33334445677775
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00013 Score=66.69 Aligned_cols=108 Identities=7% Similarity=0.048 Sum_probs=75.5
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cc--c-chhcccccCCCCCCCccchhhcccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GL--I-GTVHDWCESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl--~-g~~~~~ce~~~typrtydl~h~~~~~s 472 (555)
.+|+|++||.|.++..|.. +. .+|+-++-. ..+...-++ |+ + -+-.|+.+.++. .+||+|.+++.
T Consensus 37 ~~vLdiG~G~G~~~~~l~~-~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~--~~~D~i~~~~~-- 109 (183)
T 2yxd_A 37 DVVVDVGCGSGGMTVEIAK-RC--KFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDK--LEFNKAFIGGT-- 109 (183)
T ss_dssp CEEEEESCCCSHHHHHHHT-TS--SEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGG--CCCSEEEECSC--
T ss_pred CEEEEeCCCCCHHHHHHHh-cC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccC--CCCcEEEECCc--
Confidence 4899999999999999987 32 244445432 333333222 33 1 122344443332 58999998876
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEEec-chhHHHHHHHHHhhcCcccee
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDGWL 523 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~rd-~~~~~~~~~~~~~~~~w~~~~ 523 (555)
..+..++-++-|+ |||.+++-+ ..+.+.++.+.++...|++..
T Consensus 110 ------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 153 (183)
T 2yxd_A 110 ------KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDA 153 (183)
T ss_dssp ------SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred ------ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEE
Confidence 3478899999998 999999986 777788899999988888753
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00013 Score=68.61 Aligned_cols=129 Identities=12% Similarity=0.097 Sum_probs=79.1
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHh----hccc--cchh-cccccCCCCCCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIY----DRGL--IGTV-HDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~----~rgl--~g~~-~~~ce~~~typrtydl~h~~~~~ 471 (555)
.+|+|++||.|.++.+|... |-. +|+-++.. ..+...- ..|+ +-++ .|+.+ +. -+.+||+|.+.++
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~D~i~~~~~- 141 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVRPEA--HFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEE-FP-SEPPFDGVISRAF- 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTS--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTT-SC-CCSCEEEEECSCS-
T ss_pred CeEEEECCCCCHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhh-CC-ccCCcCEEEEecc-
Confidence 47999999999998888642 322 45555533 3333322 2244 2222 23333 22 1368999987553
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcCcccee-cccccccccCCCCCceEEEEEec
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWL-SEVEPRIDALSSSEERVLIAKKK 546 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~~~l~~~k~ 546 (555)
..+..++-++-|+|+|||.+++-.....-++++++.. .|+... ..+. -+...+...++++.|+
T Consensus 142 -------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~---~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 142 -------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQ---VPALDGERHLVVIKAN 205 (207)
T ss_dssp -------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEE---CC--CCEEEEEEEEEC
T ss_pred -------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeec---cCCCCCceEEEEEEec
Confidence 2367899999999999999999876666777777776 676521 0001 1112345777887774
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00018 Score=67.29 Aligned_cols=140 Identities=9% Similarity=0.022 Sum_probs=82.0
Q ss_pred eeEeeccCCcchhhhhccCC--CceEEEecccCCC-CchhHHhhc----cc---cchhcccccCCC-CCCCccchhhccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS-ARLKIIYDR----GL---IGTVHDWCESFS-TYPRTYDLLHAWK 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~~-~~l~~i~~r----gl---~g~~~~~ce~~~-typrtydl~h~~~ 469 (555)
.+|+|++||.|.++..|... |-- +|+-++.. ..+...-++ |+ +-+.+.=.+.+. ..+.+||+|-++.
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 101 (197)
T 3eey_A 24 DTVVDATCGNGNDTAFLASLVGENG--RVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNL 101 (197)
T ss_dssp CEEEESCCTTSHHHHHHHHHHCTTC--EEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEE
T ss_pred CEEEEcCCCCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcC
Confidence 37999999999999888653 221 55666643 445443332 43 222222122333 3457999998776
Q ss_pred cccccccCCC------ChhhhhhhhcccccCCceEEEec------chhHHHHHHHHHhhcC---ccceecccccccccCC
Q 008748 470 VFSEIEERGC------SFEDLLIEMDRMLRPEGFVIIRD------KSSIINYIRKFITALK---WDGWLSEVEPRIDALS 534 (555)
Q Consensus 470 ~~s~~~~~~c------~~~~~~~e~drilrp~g~~i~rd------~~~~~~~~~~~~~~~~---w~~~~~~~~~~~~~~~ 534 (555)
.|-. ..... ....++-++-|+|+|||.+++-+ ..+....+.+.+..+. |++..... -. ..
T Consensus 102 ~~~~-~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~--~~--~~ 176 (197)
T 3eey_A 102 GYLP-SGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDF--IN--QA 176 (197)
T ss_dssp SBCT-TSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEE--TT--CC
T ss_pred Cccc-CcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEe--cc--Cc
Confidence 5410 00000 13468999999999999999874 2234566667776665 66532221 11 11
Q ss_pred CCCceEEEEEecc
Q 008748 535 SSEERVLIAKKKL 547 (555)
Q Consensus 535 ~~~~~~l~~~k~~ 547 (555)
..+..++|.+|..
T Consensus 177 ~~pp~~~~~~~~~ 189 (197)
T 3eey_A 177 NCPPILVCIEKIS 189 (197)
T ss_dssp SCCCEEEEEEECC
T ss_pred cCCCeEEEEEEcc
Confidence 2466788887754
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00024 Score=66.92 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=75.9
Q ss_pred cceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhh----ccc--cc-hhcccccCCCCCCCccchhhccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYD----RGL--IG-TVHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~----rgl--~g-~~~~~ce~~~typrtydl~h~~~ 469 (555)
.-.+|+|++||.|.++..|... |- -+|+-++.. ..+...-+ .|+ +- +..|..+.+... .+||++-++.
T Consensus 40 ~~~~vLDiG~G~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~D~i~~~~ 116 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEASNLMPN--GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDL-PDPDRVFIGG 116 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHCTT--SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTS-CCCSEEEESC
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcC-CCCCEEEECC
Confidence 3468999999999999888653 21 134445532 44444333 243 11 223333443322 5799988766
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEec-chhHHHHHHHHHhhcCccce
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDGW 522 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd-~~~~~~~~~~~~~~~~w~~~ 522 (555)
.+. .+..++-++-|+|+|||.+++.. ..+...++.++++...|++.
T Consensus 117 ~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 163 (204)
T 3e05_A 117 SGG-------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYMVE 163 (204)
T ss_dssp CTT-------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCEEE
T ss_pred CCc-------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCcee
Confidence 543 47889999999999999999974 45678888888888888643
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00029 Score=66.88 Aligned_cols=98 Identities=22% Similarity=0.307 Sum_probs=63.0
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----c--ccchhcccccCCCCCCCccchhhcccccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----G--LIGTVHDWCESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----g--l~g~~~~~ce~~~typrtydl~h~~~~~s 472 (555)
-.+|+|++||.|.++..|...-. +|+-++-. ..+...-++ | +--+..|..+ ++.-+.+||+|.+.+++.
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK-LSFEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTS-CCSCTTCEEEEEEESCGG
T ss_pred CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhc-CCCCCCcEEEEEEcCchH
Confidence 45899999999999988875532 56655543 444433332 1 1112233333 232246999999988743
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
.... -+...+|-++-|+|+|||.+++-+.
T Consensus 115 ~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 115 HFEP--LELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp GCCH--HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hCCH--HHHHHHHHHHHHHcCCCcEEEEEec
Confidence 2111 1356899999999999999998754
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00012 Score=70.19 Aligned_cols=97 Identities=21% Similarity=0.304 Sum_probs=62.3
Q ss_pred ceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhc----c-ccchhcccccCCCCCCCccchhhcccccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR----G-LIGTVHDWCESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~r----g-l~g~~~~~ce~~~typrtydl~h~~~~~s 472 (555)
=.+|+|++||.|.++.+|... |- .+|+-++-. ..+...-++ | +--+-.|. +.++ ++.+||+|.+..+|.
T Consensus 45 ~~~vLDiG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~ 120 (234)
T 3dtn_A 45 NPDILDLGAGTGLLSAFLMEKYPE--ATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADY-SKYD-FEEKYDMVVSALSIH 120 (234)
T ss_dssp SCEEEEETCTTSHHHHHHHHHCTT--CEEEEEESCHHHHHHHHHHTCSCTTEEEEESCT-TTCC-CCSCEEEEEEESCGG
T ss_pred CCeEEEecCCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHhhccCCCEEEEeCch-hccC-CCCCceEEEEeCccc
Confidence 368999999999999988653 21 244555542 444444333 1 11122232 2222 238999999998887
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
.+.. -....+|-|+-|+|+|||.+++.|
T Consensus 121 ~~~~--~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 121 HLED--EDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp GSCH--HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCH--HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 5421 112358999999999999999976
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0004 Score=64.96 Aligned_cols=158 Identities=11% Similarity=0.088 Sum_probs=86.7
Q ss_pred HhHhhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCC-CCchhHHhh----cc--ccc
Q 008748 375 EDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD----RG--LIG 446 (555)
Q Consensus 375 ~d~~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~-~~~l~~i~~----rg--l~g 446 (555)
.+++.|.+.+-.+... ...=..|+|++||.|.++.+|... +- .+|+-++- +..+...-+ .| +-=
T Consensus 12 ~~~~~~~~~~~~~l~~------~~~~~~vLDiG~G~G~~~~~l~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~ 83 (215)
T 4dzr_A 12 PDTEVLVEEAIRFLKR------MPSGTRVIDVGTGSGCIAVSIALACPG--VSVTAVDLSMDALAVARRNAERFGAVVDW 83 (215)
T ss_dssp HHHHHHHHHHHHHHTT------CCTTEEEEEEESSBCHHHHHHHHHCTT--EEEEEEECC-------------------C
T ss_pred ccHHHHHHHHHHHhhh------cCCCCEEEEecCCHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHHHHhCCceEE
Confidence 4566666555443221 123468999999999999888653 21 23444443 222322211 12 222
Q ss_pred hhcccccCCCC---CCCccchhhccccccccc------c------CCCC----------hhhhhhhhcccccCCce-EEE
Q 008748 447 TVHDWCESFST---YPRTYDLLHAWKVFSEIE------E------RGCS----------FEDLLIEMDRMLRPEGF-VII 500 (555)
Q Consensus 447 ~~~~~ce~~~t---yprtydl~h~~~~~s~~~------~------~~c~----------~~~~~~e~drilrp~g~-~i~ 500 (555)
+..|+.+.+.. .+.+||+|-++--|.... . .... +..++-++-|+|+|||. +++
T Consensus 84 ~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 163 (215)
T 4dzr_A 84 AAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFL 163 (215)
T ss_dssp CHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEE
T ss_pred EEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 33455554332 237899999865442110 0 0011 16788999999999999 777
Q ss_pred ecchhHHHHHHHHHh--hcCccceecccccccccCCCCCceEEEEEec
Q 008748 501 RDKSSIINYIRKFIT--ALKWDGWLSEVEPRIDALSSSEERVLIAKKK 546 (555)
Q Consensus 501 rd~~~~~~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k~ 546 (555)
--.......+.+++. .-.|... ... . ...+.+++++++|.
T Consensus 164 ~~~~~~~~~~~~~l~~~~~gf~~~-~~~---~--~~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 164 EVGHNQADEVARLFAPWRERGFRV-RKV---K--DLRGIDRVIAVTRE 205 (215)
T ss_dssp ECTTSCHHHHHHHTGGGGGGTEEC-CEE---E--CTTSCEEEEEEEEC
T ss_pred EECCccHHHHHHHHHHhhcCCceE-EEE---E--ecCCCEEEEEEEEc
Confidence 655556777788887 6666431 111 1 11356899999875
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00023 Score=70.99 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=45.3
Q ss_pred CccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecc----------------hhHHHHHHHHHhhcCccc
Q 008748 460 RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK----------------SSIINYIRKFITALKWDG 521 (555)
Q Consensus 460 rtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~----------------~~~~~~~~~~~~~~~w~~ 521 (555)
.+||+|-+..+|..+...--+...+|-||-|+|||||++++.+. .-..+++++++..-.++.
T Consensus 173 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~ 250 (289)
T 2g72_A 173 LPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKV 250 (289)
T ss_dssp SSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred CCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeE
Confidence 57999999988874221111367899999999999999998531 113677888888777765
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00034 Score=68.86 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=80.1
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHH----hhccc---cchh-cccccCCCCC-CCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKII----YDRGL---IGTV-HDWCESFSTY-PRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i----~~rgl---~g~~-~~~ce~~~ty-prtydl~h~~~~ 470 (555)
.+|+|++||.|.++..|....-. +|+-++-. ..+... -..|+ +-++ .|..+....+ +.+||+|-++--
T Consensus 51 ~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npP 128 (259)
T 3lpm_A 51 GKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP 128 (259)
T ss_dssp CEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCC
T ss_pred CEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCC
Confidence 57999999999999988776433 56666643 334332 22244 2222 2333332223 479999998755
Q ss_pred cccc----------------ccCCCChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcCccce
Q 008748 471 FSEI----------------EERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGW 522 (555)
Q Consensus 471 ~s~~----------------~~~~c~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~w~~~ 522 (555)
|... ....+.+..++-++-|+|+|||.+++--..+.+.++...+....|+..
T Consensus 129 y~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~ 196 (259)
T 3lpm_A 129 YFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPK 196 (259)
T ss_dssp C-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEE
T ss_pred CCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceE
Confidence 4311 011245778999999999999999997777788889899988888864
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00012 Score=71.45 Aligned_cols=121 Identities=12% Similarity=0.068 Sum_probs=76.1
Q ss_pred cceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----c------------------------------
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----G------------------------------ 443 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----g------------------------------ 443 (555)
.-.+|+|++||.|.++..|..... -+|+-++-. ..+...-++ +
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 346899999999999988875433 356666643 334433221 1
Q ss_pred -cc-c-hhcccccCCCCCC---CccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecchh------------
Q 008748 444 -LI-G-TVHDWCESFSTYP---RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS------------ 505 (555)
Q Consensus 444 -l~-g-~~~~~ce~~~typ---rtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~------------ 505 (555)
-| - +-.|..+..+.-+ .+||+|.+..++..+..+.=....+|-++-|+|+|||.+|+.+...
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~ 213 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFS 213 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccc
Confidence 02 1 1223333222123 7999999988876322111136788999999999999999875211
Q ss_pred ----HHHHHHHHHhhcCccc
Q 008748 506 ----IINYIRKFITALKWDG 521 (555)
Q Consensus 506 ----~~~~~~~~~~~~~w~~ 521 (555)
..+.+.+++....+++
T Consensus 214 ~~~~~~~~~~~~l~~aGf~~ 233 (265)
T 2i62_A 214 SLPLGWETVRDAVEEAGYTI 233 (265)
T ss_dssp CCCCCHHHHHHHHHHTTCEE
T ss_pred ccccCHHHHHHHHHHCCCEE
Confidence 2447888888777776
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00047 Score=68.05 Aligned_cols=162 Identities=13% Similarity=0.030 Sum_probs=92.8
Q ss_pred HhhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhH----Hhhccc--cchh
Q 008748 377 IGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKI----IYDRGL--IGTV 448 (555)
Q Consensus 377 ~~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~----i~~rgl--~g~~ 448 (555)
.+.|.+++-.-...+. .+....-.+|+|++||.|.++..|... |-+ .|+-++.. .-+.+ +-+-|+ |=++
T Consensus 59 ~~~~~~~~~ds~~~l~-~~~~~~~~~vLDiG~G~G~~~i~la~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~ 135 (249)
T 3g89_A 59 EEVVVKHFLDSLTLLR-LPLWQGPLRVLDLGTGAGFPGLPLKIVRPEL--ELVLVDATRKKVAFVERAIEVLGLKGARAL 135 (249)
T ss_dssp HHHHHHHHHHHHGGGG-SSCCCSSCEEEEETCTTTTTHHHHHHHCTTC--EEEEEESCHHHHHHHHHHHHHHTCSSEEEE
T ss_pred HHHhhceeeechhhhc-ccccCCCCEEEEEcCCCCHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHhCCCceEEE
Confidence 4566655433223232 122233468999999999887776532 322 34555543 33333 223355 3334
Q ss_pred cccccCCC---CCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEec---chhHHHHHHHHHhhcCccce
Q 008748 449 HDWCESFS---TYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD---KSSIINYIRKFITALKWDGW 522 (555)
Q Consensus 449 ~~~ce~~~---typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd---~~~~~~~~~~~~~~~~w~~~ 522 (555)
|.=.|.+. .++.+||+|-+..+ .++..++-++-|+|+|||.+++-. ..+-+.+++..++.+.++..
T Consensus 136 ~~d~~~~~~~~~~~~~fD~I~s~a~--------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~ 207 (249)
T 3g89_A 136 WGRAEVLAREAGHREAYARAVARAV--------APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLG 207 (249)
T ss_dssp ECCHHHHTTSTTTTTCEEEEEEESS--------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEE
T ss_pred ECcHHHhhcccccCCCceEEEECCc--------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEE
Confidence 43334443 34579999986543 247788899999999999988743 34556667777777788763
Q ss_pred ecccccccccCCCCCceEEEEEecccccc
Q 008748 523 LSEVEPRIDALSSSEERVLIAKKKLWDEE 551 (555)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~l~~~k~~w~~~ 551 (555)
. ..+ -.-|.......+++.+|.=.++.
T Consensus 208 ~-~~~-~~~p~~~~~R~l~~~~k~~~t~~ 234 (249)
T 3g89_A 208 E-VLA-LQLPLSGEARHLVVLEKTAPTPP 234 (249)
T ss_dssp E-EEE-EECTTTCCEEEEEEEEECSCCCT
T ss_pred E-EEE-eeCCCCCCcEEEEEEEeCCCCCC
Confidence 1 111 11122223445677777655553
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00025 Score=67.40 Aligned_cols=101 Identities=15% Similarity=0.168 Sum_probs=65.2
Q ss_pred ceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhc----cc-------cch-hcccccCCCCCCCccchh
Q 008748 400 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR----GL-------IGT-VHDWCESFSTYPRTYDLL 465 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~r----gl-------~g~-~~~~ce~~~typrtydl~ 465 (555)
-..|+|++||.|.|+.+|... +.. +|+-++-. ..+...-++ |+ +-+ -.|. +..+.-+.+||+|
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~v 106 (217)
T 3jwh_A 30 ARRVIDLGCGQGNLLKILLKDSFFE--QITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL-TYQDKRFHGYDAA 106 (217)
T ss_dssp CCEEEEETCTTCHHHHHHHHCTTCS--EEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT-TSCCGGGCSCSEE
T ss_pred CCEEEEeCCCCCHHHHHHHhhCCCC--EEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc-ccccccCCCcCEE
Confidence 358999999999999999753 321 45555533 444444333 22 111 1222 2222223689999
Q ss_pred hccccccccccCCCChhhhhhhhcccccCCceEEEecchh
Q 008748 466 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS 505 (555)
Q Consensus 466 h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~ 505 (555)
-+..+|..+.. -.+..+|-++-|+|+|||.+++-+..+
T Consensus 107 ~~~~~l~~~~~--~~~~~~l~~~~~~LkpgG~li~~~~~~ 144 (217)
T 3jwh_A 107 TVIEVIEHLDL--SRLGAFERVLFEFAQPKIVIVTTPNIE 144 (217)
T ss_dssp EEESCGGGCCH--HHHHHHHHHHHTTTCCSEEEEEEEBHH
T ss_pred eeHHHHHcCCH--HHHHHHHHHHHHHcCCCEEEEEccCcc
Confidence 99998875432 235688999999999999998876543
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00041 Score=66.43 Aligned_cols=120 Identities=14% Similarity=0.083 Sum_probs=76.5
Q ss_pred eeEeeccCC-cchhhhhccCCCceEEEecccCCC-CchhHHh----hccc-cchhc-ccccCCCCCC-Cccchhhccccc
Q 008748 401 RNVMDMNSN-LGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY----DRGL-IGTVH-DWCESFSTYP-RTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~-~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~----~rgl-~g~~~-~~ce~~~typ-rtydl~h~~~~~ 471 (555)
.+|+|++|| .|.++.+|.... .-+|+-++-. ..+...- ..|+ +-+++ |+ +.+..+| .+||+|-++-.|
T Consensus 57 ~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~I~~npp~ 133 (230)
T 3evz_A 57 EVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNG-GIIKGVVEGTFDVIFSAPPY 133 (230)
T ss_dssp CEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSS-CSSTTTCCSCEEEEEECCCC
T ss_pred CEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCc-hhhhhcccCceeEEEECCCC
Confidence 579999999 999988876542 2345555543 3444322 2343 22222 32 1233344 799999987655
Q ss_pred ccccc---------------CCCChhhhhhhhcccccCCceEEE--ecchhHHHHHHHHHhhcCcccee
Q 008748 472 SEIEE---------------RGCSFEDLLIEMDRMLRPEGFVII--RDKSSIINYIRKFITALKWDGWL 523 (555)
Q Consensus 472 s~~~~---------------~~c~~~~~~~e~drilrp~g~~i~--rd~~~~~~~~~~~~~~~~w~~~~ 523 (555)
..... ....+..++-++-|+|+|||.+++ -...+...++.+.+....|++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~ 202 (230)
T 3evz_A 134 YDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKD 202 (230)
T ss_dssp C---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEE
Confidence 42111 001136789999999999999997 44557788999999999998754
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00024 Score=65.19 Aligned_cols=112 Identities=15% Similarity=0.139 Sum_probs=75.7
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----ccc---c-chhcccccCCCCCCCccchhhcccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGL---I-GTVHDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl---~-g~~~~~ce~~~typrtydl~h~~~~ 470 (555)
-.+|+|++||.|.++..|...- -+|+-++.. ..+...-+ .|+ + -+-.|+.+.++.. .+||+|-+++.
T Consensus 34 ~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~~ 109 (192)
T 1l3i_A 34 NDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI-PDIDIAVVGGS 109 (192)
T ss_dssp TCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS-CCEEEEEESCC
T ss_pred CCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC-CCCCEEEECCc
Confidence 3589999999999998887654 355555543 33333322 233 1 1123444433321 38999988776
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEec-chhHHHHHHHHHhhcCccce
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDGW 522 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd-~~~~~~~~~~~~~~~~w~~~ 522 (555)
+. .+..++-++-|+|+|||.+++-+ ..+...++.+++....|++.
T Consensus 110 ~~-------~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 155 (192)
T 1l3i_A 110 GG-------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN 155 (192)
T ss_dssp TT-------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred hH-------HHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceE
Confidence 54 26889999999999999999864 46677888888888777654
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00026 Score=68.61 Aligned_cols=92 Identities=13% Similarity=0.258 Sum_probs=60.3
Q ss_pred ceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHh----hccc---cch-hcccccCCC-CCCCccchhhcc
Q 008748 400 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIY----DRGL---IGT-VHDWCESFS-TYPRTYDLLHAW 468 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~----~rgl---~g~-~~~~ce~~~-typrtydl~h~~ 468 (555)
-.+|+|++||.|.++.+|... | ...|+-++.. ..+.+.- +.|+ |-+ ..|..+.++ ..+.+||+|..+
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISD--DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCT--TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred CCEEEEEeCchhHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 468999999999999998762 2 2355556543 3343322 2343 112 234444434 346799999865
Q ss_pred ccccccccCCCChhhhhhhhcccccCCceEEE
Q 008748 469 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 500 (555)
Q Consensus 469 ~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~ 500 (555)
.-. -....++-++-|+|||||.+++
T Consensus 150 ~~~-------~~~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 150 AAK-------AQSKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp TTS-------SSHHHHHHHHGGGEEEEEEEEE
T ss_pred CcH-------HHHHHHHHHHHHhcCCCeEEEE
Confidence 422 2367788899999999999999
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00016 Score=68.89 Aligned_cols=98 Identities=14% Similarity=0.290 Sum_probs=64.3
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----ccc-------cchhcccccCCCCCCCccchhhcc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGL-------IGTVHDWCESFSTYPRTYDLLHAW 468 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl-------~g~~~~~ce~~~typrtydl~h~~ 468 (555)
..|+|++||.|.++.+|..... +|+-++-. ..+...-+ .|+ +-....=.+.++.-+.+||+|-+.
T Consensus 32 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 108 (235)
T 3sm3_A 32 DEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ 108 (235)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence 4799999999999999977632 56666543 44444333 333 122222223334335799999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 469 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 469 ~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+++..+... -....+|-++-|+|||||.+++.+
T Consensus 109 ~~l~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 109 AFLTSVPDP-KERSRIIKEVFRVLKPGAYLYLVE 141 (235)
T ss_dssp SCGGGCCCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhcCCCH-HHHHHHHHHHHHHcCCCeEEEEEE
Confidence 888743211 112379999999999999999974
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00066 Score=67.44 Aligned_cols=135 Identities=13% Similarity=0.220 Sum_probs=86.7
Q ss_pred eeEeeccCCcchhhhhccC-CCceEEEecccCCC-CchhHHhhc----cc--c-chhcccccCCCCCCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMS-ARLKIIYDR----GL--I-GTVHDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~-~~~wvmnv~p~~~~-~~l~~i~~r----gl--~-g~~~~~ce~~~typrtydl~h~~~~~ 471 (555)
.+|+|++||.|.++.+|.. .|-+ +|+-++.. ..+.+.-++ |+ + =+..|+.+.++ +.+||+|-++--+
T Consensus 111 ~~vLDlG~GsG~~~~~la~~~~~~--~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~fD~Iv~npPy 186 (276)
T 2b3t_A 111 CRILDLGTGTGAIALALASERPDC--EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA--GQQFAMIVSNPPY 186 (276)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTS--EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT--TCCEEEEEECCCC
T ss_pred CEEEEecCCccHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc--cCCccEEEECCCC
Confidence 4799999999999988863 2332 45555543 444443332 33 1 22346655543 4689999987443
Q ss_pred cccc-----------cCC----------CChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcCccceeccccccc
Q 008748 472 SEIE-----------ERG----------CSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRI 530 (555)
Q Consensus 472 s~~~-----------~~~----------c~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 530 (555)
.... ... -.+..++-++-|+|+|||++++.......+++++++....|+.. ... .
T Consensus 187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v-~~~---~ 262 (276)
T 2b3t_A 187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDV-ETC---R 262 (276)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTC-CEE---E
T ss_pred CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEE-EEE---e
Confidence 2110 000 12356788999999999999998777777888888888778641 111 1
Q ss_pred ccCCCCCceEEEEEe
Q 008748 531 DALSSSEERVLIAKK 545 (555)
Q Consensus 531 ~~~~~~~~~~l~~~k 545 (555)
...+.+++++++|
T Consensus 263 --d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 263 --DYGDNERVTLGRY 275 (276)
T ss_dssp --CTTSSEEEEEEEC
T ss_pred --cCCCCCcEEEEEE
Confidence 1246789998875
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00032 Score=68.11 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=71.3
Q ss_pred cceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhcc--ccchhcccccCCCCCCCccchhhcccccccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDRG--LIGTVHDWCESFSTYPRTYDLLHAWKVFSEI 474 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~rg--l~g~~~~~ce~~~typrtydl~h~~~~~s~~ 474 (555)
.-.+|+|++||.|.++.+|.+. |.. +|+-++-. ..+...-++. +--+..| .+.++ -+.+||+|++..+|..+
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d-~~~~~-~~~~fD~v~~~~~l~~~ 108 (259)
T 2p35_A 33 RVLNGYDLGCGPGNSTELLTDRYGVN--VITGIDSDDDMLEKAADRLPNTNFGKAD-LATWK-PAQKADLLYANAVFQWV 108 (259)
T ss_dssp CCSSEEEETCTTTHHHHHHHHHHCTT--SEEEEESCHHHHHHHHHHSTTSEEEECC-TTTCC-CSSCEEEEEEESCGGGS
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHhCCCcEEEECC-hhhcC-ccCCcCEEEEeCchhhC
Confidence 3468999999999999888653 111 33444432 4444444441 1111222 23344 46799999999888743
Q ss_pred ccCCCChhhhhhhhcccccCCceEEEecc----hhHHHHHHHHHhhcCccc
Q 008748 475 EERGCSFEDLLIEMDRMLRPEGFVIIRDK----SSIINYIRKFITALKWDG 521 (555)
Q Consensus 475 ~~~~c~~~~~~~e~drilrp~g~~i~rd~----~~~~~~~~~~~~~~~w~~ 521 (555)
. +...+|-|+-|+|+|||.+++... ......+..+.....|..
T Consensus 109 ~----~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (259)
T 2p35_A 109 P----DHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKD 155 (259)
T ss_dssp T----THHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGG
T ss_pred C----CHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHH
Confidence 2 478899999999999999999742 112233444544445643
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00017 Score=75.62 Aligned_cols=114 Identities=16% Similarity=0.150 Sum_probs=76.2
Q ss_pred eeEeeccCCcchhhhhccCC--CceEEEecccCCC-CchhHHhhc---------c-c----cchh-cccccCC------C
Q 008748 401 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS-ARLKIIYDR---------G-L----IGTV-HDWCESF------S 456 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~~-~~l~~i~~r---------g-l----~g~~-~~~ce~~------~ 456 (555)
..|+|++||.|.++..|... |-. .|+-++-. ..+.+.-++ | + +-.. .|..+ + +
T Consensus 85 ~~VLDlGcG~G~~~~~la~~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~-l~~~~~~~ 161 (383)
T 4fsd_A 85 ATVLDLGCGTGRDVYLASKLVGEHG--KVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIEN-LATAEPEG 161 (383)
T ss_dssp CEEEEESCTTSHHHHHHHHHHTTTC--EEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTC-GGGCBSCC
T ss_pred CEEEEecCccCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHH-hhhcccCC
Confidence 47999999999998887643 322 45555543 555555444 4 1 1122 23332 2 2
Q ss_pred CCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecch-----------------------hHHHHHHHH
Q 008748 457 TYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS-----------------------SIINYIRKF 513 (555)
Q Consensus 457 typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~-----------------------~~~~~~~~~ 513 (555)
.-+.+||+|++..+|..+. +...+|-|+-|+|||||++++.|-. -..+++.++
T Consensus 162 ~~~~~fD~V~~~~~l~~~~----d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 237 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLST----NKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRL 237 (383)
T ss_dssp CCTTCEEEEEEESCGGGCS----CHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHH
T ss_pred CCCCCEEEEEEccchhcCC----CHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHH
Confidence 2346999999999988432 3689999999999999999987421 123778888
Q ss_pred HhhcCccc
Q 008748 514 ITALKWDG 521 (555)
Q Consensus 514 ~~~~~w~~ 521 (555)
+..-.++.
T Consensus 238 l~~aGF~~ 245 (383)
T 4fsd_A 238 VAEAGFRD 245 (383)
T ss_dssp HHHTTCCC
T ss_pred HHHCCCce
Confidence 88777764
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00034 Score=66.66 Aligned_cols=109 Identities=10% Similarity=-0.035 Sum_probs=71.0
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----cccc---chh-cccccCCCCCCCccchhhcccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGLI---GTV-HDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl~---g~~-~~~ce~~~typrtydl~h~~~~ 470 (555)
=..|+|++||.|.++..|... ...|+-++-. ..+...-+ .|+- -++ .|..+.+... .+||++-.++.
T Consensus 56 ~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~-~~~D~v~~~~~ 131 (204)
T 3njr_A 56 GELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADL-PLPEAVFIGGG 131 (204)
T ss_dssp TCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTS-CCCSEEEECSC
T ss_pred CCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccC-CCCCEEEECCc
Confidence 357999999999999888665 2345555543 44444332 2443 122 2333323322 36888765542
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEec-chhHHHHHHHHHhhcCccc
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDG 521 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd-~~~~~~~~~~~~~~~~w~~ 521 (555)
+ ... ++-++-|+|||||.+++.. ..+.+.++.++++...+++
T Consensus 132 ~--------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i 174 (204)
T 3njr_A 132 G--------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQL 174 (204)
T ss_dssp C--------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEE
T ss_pred c--------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcE
Confidence 2 356 8999999999999999975 4667788888888777765
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00017 Score=69.33 Aligned_cols=107 Identities=12% Similarity=0.145 Sum_probs=70.3
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhcc--ccchhcccccCCCCC-CCccchhhcccccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRG--LIGTVHDWCESFSTY-PRTYDLLHAWKVFSEIEE 476 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rg--l~g~~~~~ce~~~ty-prtydl~h~~~~~s~~~~ 476 (555)
..|+|++||.|.++..|.... ..|+-++-. ..+...-++. +-=+..|+.+.++.- +.+||+|.+.
T Consensus 50 ~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-------- 118 (226)
T 3m33_A 50 TRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-------- 118 (226)
T ss_dssp CEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE--------
T ss_pred CeEEEeCCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC--------
Confidence 479999999999999998763 256666653 5565555551 222334555555532 4799999865
Q ss_pred CCCChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcCcc
Q 008748 477 RGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWD 520 (555)
Q Consensus 477 ~~c~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~w~ 520 (555)
-+...+|-|+-|+|||||.++.-........+.+.+....++
T Consensus 119 --~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~ 160 (226)
T 3m33_A 119 --RGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWD 160 (226)
T ss_dssp --SCCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCE
T ss_pred --CCHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCe
Confidence 146788999999999999999432222334455555544443
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00032 Score=65.70 Aligned_cols=111 Identities=16% Similarity=0.203 Sum_probs=71.0
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cc-cchhcccccCCCCCCCccchhhccccccccc
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GL-IGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 475 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl-~g~~~~~ce~~~typrtydl~h~~~~~s~~~ 475 (555)
+|+|++||.|.++..|..... +|+-++.. ..+...-++ |+ +-+++.=.+.++.-+.+||+|.+. |..+
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~- 105 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHL- 105 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCC-
T ss_pred CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcC-
Confidence 899999999999999987643 66666654 444444333 33 112221122233223689999874 2222
Q ss_pred cCCCChhhhhhhhcccccCCceEEEecc-----------------hhHHHHHHHHHhhcCccc
Q 008748 476 ERGCSFEDLLIEMDRMLRPEGFVIIRDK-----------------SSIINYIRKFITALKWDG 521 (555)
Q Consensus 476 ~~~c~~~~~~~e~drilrp~g~~i~rd~-----------------~~~~~~~~~~~~~~~w~~ 521 (555)
..-....+|-++-|+|+|||.+++.+. .-..+++++++. .|++
T Consensus 106 -~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v 165 (202)
T 2kw5_A 106 -PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNW 165 (202)
T ss_dssp -CHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCE
T ss_pred -CHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceE
Confidence 112367899999999999999998731 123567777777 6665
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.05 E-value=7.7e-05 Score=70.09 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=70.2
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc-----cccchhcccccCCCCCCCccchhhcccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR-----GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEI 474 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r-----gl~g~~~~~ce~~~typrtydl~h~~~~~s~~ 474 (555)
.+|+|++||.|.++..|.....- +|+-++-. ..+...-++ .+--+..|..+ ++.-+.+||+|-+.++|..+
T Consensus 44 ~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~v~~~~~~~~~ 120 (215)
T 2pxx_A 44 DRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRK-LDFPSASFDVVLEKGTLDAL 120 (215)
T ss_dssp CCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTS-CCSCSSCEEEEEEESHHHHH
T ss_pred CeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhc-CCCCCCcccEEEECcchhhh
Confidence 47999999999999988754211 44444432 333333222 11112233332 23224689999998887643
Q ss_pred cc-----------CCCChhhhhhhhcccccCCceEEEecchhHHHHHHHHH--hhcCccce
Q 008748 475 EE-----------RGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFI--TALKWDGW 522 (555)
Q Consensus 475 ~~-----------~~c~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~--~~~~w~~~ 522 (555)
.. +.-....+|-|+-|+|+|||.+++.+-..- ...+.++ ....|+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~-~~~~~~~~~~~~~~~~~ 180 (215)
T 2pxx_A 121 LAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP-HFRTRHYAQAYYGWSLR 180 (215)
T ss_dssp TTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH-HHHHHHHCCGGGCEEEE
T ss_pred ccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc-HHHHHHHhccccCcEEE
Confidence 20 012357899999999999999999875432 1123333 24467764
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00024 Score=70.63 Aligned_cols=113 Identities=16% Similarity=0.234 Sum_probs=74.0
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHh----hccc-cch-hcccccCCCCCCCccchhhcccccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY----DRGL-IGT-VHDWCESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~----~rgl-~g~-~~~~ce~~~typrtydl~h~~~~~s 472 (555)
=..|+|++||.|.++..|..... +|+-++-. .-+...- ..|+ +-+ ..|..+ ++. +.+||+|.+..+|.
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~-~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTALYDINA-ANI-QENYDFIVSTVVFM 195 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGG-CCC-CSCEEEEEECSSGG
T ss_pred CCcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEEecccc-ccc-cCCccEEEEccchh
Confidence 35799999999999999987632 56666643 4444322 2343 111 123332 233 78999999999887
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEEecc--------------hhHHHHHHHHHhhcCccc
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVIIRDK--------------SSIINYIRKFITALKWDG 521 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~rd~--------------~~~~~~~~~~~~~~~w~~ 521 (555)
.+.. -.+..+|-++-|+|+|||.+++-.. .-.-++++++... |++
T Consensus 196 ~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~ 254 (286)
T 3m70_A 196 FLNR--ERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEF 254 (286)
T ss_dssp GSCG--GGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEE
T ss_pred hCCH--HHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEE
Confidence 4422 2467899999999999999776321 1114566777666 876
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00012 Score=72.61 Aligned_cols=100 Identities=15% Similarity=0.139 Sum_probs=63.1
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cc---cchhcccccCCCC-CCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GL---IGTVHDWCESFST-YPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl---~g~~~~~ce~~~t-yprtydl~h~~~~~ 471 (555)
.+|+|++||.|.++..|...+. -+|+-++-. ..+...-++ |+ +-+.+.=.+.++. -+.+||+|.+.+++
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 143 (298)
T 1ri5_A 66 DSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 143 (298)
T ss_dssp CEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchh
Confidence 5899999999999988875442 145555543 344433332 32 2222222222222 35799999998877
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
.....+.-....+|-|+-|+|+|||.+++..
T Consensus 144 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 174 (298)
T 1ri5_A 144 HYAFSTSESLDIAQRNIARHLRPGGYFIMTV 174 (298)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 5211111236789999999999999999875
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00065 Score=67.00 Aligned_cols=109 Identities=16% Similarity=0.144 Sum_probs=73.7
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCC-CCchhHHhhc----cc-cchhc-ccccCCCCCCCccchhhccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL-IGTVH-DWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~-~~~l~~i~~r----gl-~g~~~-~~ce~~~typrtydl~h~~~~~s~ 473 (555)
.+|+|++||.|.++.++..... +|+-++- +..+...-++ |+ +-+++ |+.+.++ +.+||+|.++.++..
T Consensus 122 ~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~--~~~fD~Vv~n~~~~~ 196 (254)
T 2nxc_A 122 DKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALP--FGPFDLLVANLYAEL 196 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGG--GCCEEEEEEECCHHH
T ss_pred CEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCc--CCCCCEEEECCcHHH
Confidence 5899999999999888765433 5555554 3444443332 33 22221 3333332 358999998765541
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEec-chhHHHHHHHHHhhcCccc
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDG 521 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~rd-~~~~~~~~~~~~~~~~w~~ 521 (555)
+..++-++-|+|+|||.+++.+ ...-...+++.+....++.
T Consensus 197 -------~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~ 238 (254)
T 2nxc_A 197 -------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRP 238 (254)
T ss_dssp -------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEE
T ss_pred -------HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEE
Confidence 5788999999999999999864 2344778888888877876
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0006 Score=61.27 Aligned_cols=134 Identities=13% Similarity=0.108 Sum_probs=71.9
Q ss_pred eeEeeccCCcchhhhhccCC-----CceEEEecccCCCCchhHHhhccccchhcccccCCC--------CCCCccchhhc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFS--------TYPRTYDLLHA 467 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-----~~wvmnv~p~~~~~~l~~i~~rgl~g~~~~~ce~~~--------typrtydl~h~ 467 (555)
.+|+|++||.|+++.+|... .+..+-+-| -+.+ . .+--+..|..+. + .-+.+||+|.+
T Consensus 24 ~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-----~~~~--~-~~~~~~~d~~~~-~~~~~~~~~~~~~~~D~i~~ 94 (180)
T 1ej0_A 24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-----MDPI--V-GVDFLQGDFRDE-LVMKALLERVGDSKVQVVMS 94 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-----CCCC--T-TEEEEESCTTSH-HHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-----cccc--C-cEEEEEcccccc-hhhhhhhccCCCCceeEEEE
Confidence 48999999999999888643 223322222 1111 1 111112233221 1 11368999999
Q ss_pred cccccccccCCC-C------hhhhhhhhcccccCCceEEEecc-hhHHHHHHHHHhhcCccceecccccccccCCCCCce
Q 008748 468 WKVFSEIEERGC-S------FEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWDGWLSEVEPRIDALSSSEER 539 (555)
Q Consensus 468 ~~~~s~~~~~~c-~------~~~~~~e~drilrp~g~~i~rd~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 539 (555)
+..+.......- . ...++-++-|+|+|||.+++... ..-...+.+.+.. .|+.. ....+.. ......|.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~-~~~~~~~~ 171 (180)
T 1ej0_A 95 DMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKV-KVRKPDS-SRARSREV 171 (180)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEE-EEECCTT-SCTTCCEE
T ss_pred CCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH-hhhhE-EeecCCc-ccccCceE
Confidence 877652111000 0 15788999999999999998532 1223344444444 25541 2221111 12235688
Q ss_pred EEEEEec
Q 008748 540 VLIAKKK 546 (555)
Q Consensus 540 ~l~~~k~ 546 (555)
+++|++.
T Consensus 172 ~~~~~~~ 178 (180)
T 1ej0_A 172 YIVATGR 178 (180)
T ss_dssp EEEEEEE
T ss_pred EEEEccC
Confidence 8888763
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0069 Score=60.18 Aligned_cols=92 Identities=18% Similarity=0.194 Sum_probs=53.6
Q ss_pred CCEEEEECCCCcHHHHHHhcC--------CCcccc--CChhhhhHHHHHHHHHcCCCe-EEEEe-CCCCCCCCCCCccEE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--------DIIAMS--LAPNDVHENQIQFALERGIPS-TLGVL-GTKRLPYPSRSFELA 223 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--------~V~~vd--is~~dls~a~i~~A~~rg~~v-~~~~~-d~~~Lp~~d~sFDlV 223 (555)
..+|||+||+.|+++.+.++. .++++| +.|.+.. ..+.++ .|..+ |+..+. ...+|+|
T Consensus 74 g~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~--------~~Gv~~i~~~~G~Df~~~~--~~~~DvV 143 (269)
T 2px2_A 74 IGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQ--------SYGWNIVTMKSGVDVFYKP--SEISDTL 143 (269)
T ss_dssp CEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCC--------STTGGGEEEECSCCGGGSC--CCCCSEE
T ss_pred CCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCccc--------CCCceEEEeeccCCccCCC--CCCCCEE
Confidence 468999999999999999875 123444 2222110 012222 34435 766543 4579999
Q ss_pred Eecccc---cccccchH--HHHHHHHhhcCCCc-EEEEEc
Q 008748 224 HCSRCR---IDWLQRDG--ILLLELDRLLRPGG-YFVYSS 257 (555)
Q Consensus 224 v~s~~~---l~~~~d~~--~~L~el~RvLkPGG-~lvis~ 257 (555)
+|-.+. ....+... .+|.-+.++|+||| .|++-.
T Consensus 144 LSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKV 183 (269)
T 2px2_A 144 LCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKI 183 (269)
T ss_dssp EECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred EeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 984321 11111111 14555668999999 888754
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0012 Score=60.72 Aligned_cols=129 Identities=15% Similarity=0.159 Sum_probs=82.9
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhccccchhcccccCCCCCCCccchhhccccccccccC---
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEER--- 477 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl~g~~~~~ce~~~typrtydl~h~~~~~s~~~~~--- 477 (555)
.|+|++||.|.++.+|...- +|+-++-. .-+.. ...+--+..|..+.+. +.+||+|-++..|......
T Consensus 26 ~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~--~~~~~~~~~d~~~~~~--~~~fD~i~~n~~~~~~~~~~~~ 97 (170)
T 3q87_B 26 IVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES--HRGGNLVRADLLCSIN--QESVDVVVFNPPYVPDTDDPII 97 (170)
T ss_dssp EEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT--CSSSCEEECSTTTTBC--GGGCSEEEECCCCBTTCCCTTT
T ss_pred eEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc--ccCCeEEECChhhhcc--cCCCCEEEECCCCccCCccccc
Confidence 79999999999999998765 67777654 44433 2223223344444333 2799999988766521111
Q ss_pred --CCChhhhhhhhcccccCCceEEEec-chhHHHHHHHHHhhcCccceecccccccccCCCCCceEEEEEe
Q 008748 478 --GCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKK 545 (555)
Q Consensus 478 --~c~~~~~~~e~drilrp~g~~i~rd-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k 545 (555)
......++-++=|.| |||.+++-. ......+++++++...|+...... . ....|++++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~--~----~~~~e~~~~~~~ 161 (170)
T 3q87_B 98 GGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKV--R----KILGETVYIIKG 161 (170)
T ss_dssp BCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEE--E----ECSSSEEEEEEE
T ss_pred cCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEe--e----ccCCceEEEEEE
Confidence 112345666777777 999999865 445678899999999998742221 1 124577776653
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00056 Score=70.76 Aligned_cols=111 Identities=13% Similarity=0.138 Sum_probs=67.0
Q ss_pred HHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCCCchhH----Hhhccc---cchhcccccCCCCC
Q 008748 386 DYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKI----IYDRGL---IGTVHDWCESFSTY 458 (555)
Q Consensus 386 ~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~~~l~~----i~~rgl---~g~~~~~ce~~~ty 458 (555)
.|.+.+...+....=..|||++||.|.++..+...+. -.|+-++....+.. +-+.|+ |-+.+.=.+.+ ..
T Consensus 37 ~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~~ 113 (348)
T 2y1w_A 37 TYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEV-SL 113 (348)
T ss_dssp HHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTC-CC
T ss_pred HHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCC--CEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhC-CC
Confidence 3544443333333345899999999999887765542 13444443323322 222354 22332222222 24
Q ss_pred CCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 459 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 459 prtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
|..||+|-+..++..+.. -.+...+.++-|+|+|||.+++.
T Consensus 114 ~~~~D~Ivs~~~~~~~~~--~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 114 PEQVDIIISEPMGYMLFN--ERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp SSCEEEEEECCCBTTBTT--TSHHHHHHHGGGGEEEEEEEESC
T ss_pred CCceeEEEEeCchhcCCh--HHHHHHHHHHHhhcCCCeEEEEe
Confidence 678999999887764432 24677888999999999999843
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00019 Score=67.46 Aligned_cols=97 Identities=11% Similarity=0.175 Sum_probs=60.3
Q ss_pred eeEeeccCCcchhhhh-ccCCCceEEEecccCCC-CchhHHhhc----cc-cchhcccccCCCCCCCccchhhccccccc
Q 008748 401 RNVMDMNSNLGGFAAA-LKDKDVWVMNVAPVRMS-ARLKIIYDR----GL-IGTVHDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 401 rn~~dm~~~~g~faa~-l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl-~g~~~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
.+|+|++||.|.++++ +..... +|+-++.. .-+...-++ |. +-+.+.=.+.++.-+.+||+|.+.+++..
T Consensus 25 ~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 101 (209)
T 2p8j_A 25 KTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFH 101 (209)
T ss_dssp SEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGG
T ss_pred CEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHHh
Confidence 5899999999998543 333322 55555543 344433222 21 11222112233322479999999887764
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEec
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+. .-....++-|+-|+|+|||.+++.+
T Consensus 102 ~~--~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 102 MR--KNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp SC--HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC--HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 31 1236789999999999999999875
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00035 Score=71.67 Aligned_cols=95 Identities=17% Similarity=0.205 Sum_probs=60.6
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCCCchhH----Hhhccc---cchhcccccCCCCCC-Cccchhhcccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKI----IYDRGL---IGTVHDWCESFSTYP-RTYDLLHAWKVFS 472 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~~~l~~----i~~rgl---~g~~~~~ce~~~typ-rtydl~h~~~~~s 472 (555)
.+|||++||.|.++..+...+. -.|+-++....+.. +-+.|+ |-+++.-.+.++ .| .+||+|.+..++.
T Consensus 40 ~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 40 KIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVH-LPFPKVDIIISEWMGY 116 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSSSCEEEEEECCCBT
T ss_pred CEEEEecCccHHHHHHHHHCCC--CEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhcc-CCCCcccEEEEeCchh
Confidence 4799999999999887765542 14444554333332 223455 223333333333 35 7899999876544
Q ss_pred ccccCCCChhhhhhhhcccccCCceEE
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVI 499 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i 499 (555)
.+. ..-.+..++-+++|+|+|||.++
T Consensus 117 ~l~-~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 117 FLL-YESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBS-TTCCHHHHHHHHHHHEEEEEEEE
T ss_pred hcc-cHHHHHHHHHHHHhhcCCCeEEE
Confidence 221 12346788999999999999998
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00077 Score=70.54 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=70.1
Q ss_pred HHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCCCchhH----Hhhccc---cchhcccccCC
Q 008748 383 RVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKI----IYDRGL---IGTVHDWCESF 455 (555)
Q Consensus 383 ~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~~~l~~----i~~rgl---~g~~~~~ce~~ 455 (555)
+...|.+.+...+....=..|||++||.|.++..|.+... -.|+-++..+-+.. +-..|+ |-+++.=.+.+
T Consensus 47 r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 124 (376)
T 3r0q_C 47 RMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDI 124 (376)
T ss_dssp HHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGC
T ss_pred HHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhc
Confidence 3344655553222333346899999999999887765432 14555554433332 334454 33444333443
Q ss_pred CCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 456 STYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 456 ~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
. +|.+||+|.+..+...+. ..-.+..++-+++|+|+|||.+|+.
T Consensus 125 ~-~~~~~D~Iv~~~~~~~l~-~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 125 S-LPEKVDVIISEWMGYFLL-RESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp C-CSSCEEEEEECCCBTTBT-TTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred C-cCCcceEEEEcChhhccc-chHHHHHHHHHHHhhCCCCeEEEEe
Confidence 3 568999999865433221 1123677899999999999999854
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00032 Score=70.00 Aligned_cols=93 Identities=12% Similarity=0.014 Sum_probs=57.4
Q ss_pred CEEEEECCCCcHHHHHHhc--CCCccccCChhhhhHHH--HHHHHHc----C---CCeEEEEeCCCC-CCCCCCCccEEE
Q 008748 157 RNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQ--IQFALER----G---IPSTLGVLGTKR-LPYPSRSFELAH 224 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~--~~V~~vdis~~dls~a~--i~~A~~r----g---~~v~~~~~d~~~-Lp~~d~sFDlVv 224 (555)
.+|||+|||+|..+..++. ..|+++|+++....... ++.+... + .++.+..+|... ++....+||+|+
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV~ 169 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEEE
T ss_pred CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEEE
Confidence 5899999999999999885 37999999986432222 2222211 1 247888888654 342224699999
Q ss_pred ecccccccccchHHHHHHHHhhcCCCc
Q 008748 225 CSRCRIDWLQRDGILLLELDRLLRPGG 251 (555)
Q Consensus 225 ~s~~~l~~~~d~~~~L~el~RvLkPGG 251 (555)
+.- ..+.. ....++++..++|++.+
T Consensus 170 lDP-~y~~~-~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 170 LDP-MFPHK-QKSALVKKEMRVFQSLV 194 (258)
T ss_dssp ECC-CCCCC-CC-----HHHHHHHHHS
T ss_pred EcC-CCCCc-ccchHHHHHHHHHHHhh
Confidence 764 23332 22346677777887755
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00054 Score=70.91 Aligned_cols=96 Identities=16% Similarity=0.195 Sum_probs=62.5
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCCCchhH----Hhhccc---cchhcccccCCCCCC-Cccchhhcccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKI----IYDRGL---IGTVHDWCESFSTYP-RTYDLLHAWKVFS 472 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~~~l~~----i~~rgl---~g~~~~~ce~~~typ-rtydl~h~~~~~s 472 (555)
.+|||++||.|.++..|.+.+. -.|+-++....+.. +-..|+ |-+.+.=.+.+ .+| .+||+|.+..+..
T Consensus 68 ~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~Iis~~~~~ 144 (349)
T 3q7e_A 68 KVVLDVGSGTGILCMFAAKAGA--RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV-ELPVEKVDIIISEWMGY 144 (349)
T ss_dssp CEEEEESCTTSHHHHHHHHTTC--SEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSSCEEEEEECCCBB
T ss_pred CEEEEEeccchHHHHHHHHCCC--CEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHc-cCCCCceEEEEEccccc
Confidence 5799999999999988876643 13444444333332 334565 33333333443 345 7999999876544
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEE
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVII 500 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~ 500 (555)
.+. ..-.+..++-+++|+|+|||.+|.
T Consensus 145 ~l~-~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 145 CLF-YESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp TBT-BTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccc-CchhHHHHHHHHHHhCCCCCEEcc
Confidence 221 123577899999999999999873
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00048 Score=68.93 Aligned_cols=111 Identities=9% Similarity=0.092 Sum_probs=73.5
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----ccccc---hhcccccCCCCCCCccchhhcccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGLIG---TVHDWCESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl~g---~~~~~ce~~~typrtydl~h~~~~~s 472 (555)
..|+|++||.|+|+..|...-.= .|+-++.. ..+...-+ .|+-. .++.=++.+.. +.+||+|.++..++
T Consensus 127 ~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p~~ 203 (278)
T 2frn_A 127 ELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYVVR 203 (278)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCCSS
T ss_pred CEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCchh
Confidence 47999999999999887642110 35555543 34443222 25432 22222233333 67999998765433
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEEecch-------hHHHHHHHHHhhcCccce
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS-------SIINYIRKFITALKWDGW 522 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~-------~~~~~~~~~~~~~~w~~~ 522 (555)
...++-++-|+|+|||.+++-+.. +.++++++.+....|++.
T Consensus 204 --------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~ 252 (278)
T 2frn_A 204 --------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp --------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEE
T ss_pred --------HHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeE
Confidence 367788899999999999996543 567889999999999874
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0004 Score=70.21 Aligned_cols=97 Identities=13% Similarity=0.046 Sum_probs=64.8
Q ss_pred CcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----ccccc---hh-cccccCCCCCCCccchhhcc
Q 008748 398 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGLIG---TV-HDWCESFSTYPRTYDLLHAW 468 (555)
Q Consensus 398 ~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl~g---~~-~~~ce~~~typrtydl~h~~ 468 (555)
..-.+|+|++||.|.++..|.+.. -..|+-++-. ..+...-+ .|+-+ .+ .|. +.++.=+.+||+|.+.
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~V~~~ 192 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM-LDTPFDKGAVTASWNN 192 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCCCCTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh-hcCCCCCCCEeEEEEC
Confidence 445689999999999999887641 1245555543 44443333 34421 22 232 2333223799999998
Q ss_pred ccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 469 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 469 ~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
.+|..+ +...+|-|+-|+|||||.+++-+
T Consensus 193 ~~l~~~-----~~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 193 ESTMYV-----DLHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp SCGGGS-----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CchhhC-----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 888743 38999999999999999999764
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00031 Score=72.95 Aligned_cols=101 Identities=13% Similarity=0.198 Sum_probs=65.4
Q ss_pred CcceeEeeccCCcchhhhhccCC-CceEEEecccCCCCchhHHhh----ccccc----hhcccccCCCCCCCccchhhcc
Q 008748 398 NTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYD----RGLIG----TVHDWCESFSTYPRTYDLLHAW 468 (555)
Q Consensus 398 ~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~~~l~~i~~----rgl~g----~~~~~ce~~~typrtydl~h~~ 468 (555)
...+.|+|++||.|.++.+|.+. |-. .|+-++-+..+...-+ .|+-+ +-+|.-+.-.++|.+||++.+.
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~ 255 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEV--EVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMS 255 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTC--EEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCC--EEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEe
Confidence 45689999999999999999642 322 3333333444443332 24322 2334433211367899999998
Q ss_pred ccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 469 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 469 ~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+++..+... ....+|-++-|.|+|||.++|-|
T Consensus 256 ~vlh~~~~~--~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 256 QFLDCFSEE--EVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp SCSTTSCHH--HHHHHHHHHHHHCCTTCEEEEEE
T ss_pred chhhhCCHH--HHHHHHHHHHHhcCCCcEEEEEe
Confidence 888643321 24578899999999999999864
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00034 Score=67.63 Aligned_cols=99 Identities=13% Similarity=0.112 Sum_probs=59.8
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhcc----c-----cchhcccccCCCCCCCccchhhcc-c
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRG----L-----IGTVHDWCESFSTYPRTYDLLHAW-K 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rg----l-----~g~~~~~ce~~~typrtydl~h~~-~ 469 (555)
..|+|++||.|.++..|..... -+|+-++.. ..|...-++. . .|-..+.-.+|. +.+||+|.++ .
T Consensus 62 ~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~fD~V~~d~~ 137 (236)
T 1zx0_A 62 GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLP--DGHFDGILYDTY 137 (236)
T ss_dssp EEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSC--TTCEEEEEECCC
T ss_pred CeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccC--CCceEEEEECCc
Confidence 5799999999999999976543 256666644 4554444332 1 122222222333 3799999873 2
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
.++.-..+.-..+.++-|+-|+|||||.+++-+-
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 1121111111233679999999999999998653
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00044 Score=69.84 Aligned_cols=103 Identities=15% Similarity=0.085 Sum_probs=63.5
Q ss_pred cceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhcc-----------c--cchhcccccCCC---CC---
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRG-----------L--IGTVHDWCESFS---TY--- 458 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rg-----------l--~g~~~~~ce~~~---ty--- 458 (555)
.-.+|+|++||.|+++..|...+.. +|+-+|-. ..+...-+|- . +-..+.=++.++ .+
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRIN--KLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCC--EEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 3458999999999999988765432 46666643 4444433331 1 111222223322 13
Q ss_pred CCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 459 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 459 prtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
+.+||+|-+...+.....+.-....+|-++-|+|+|||.+++...
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 358999998876642111111246889999999999999998743
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00081 Score=68.43 Aligned_cols=99 Identities=14% Similarity=0.140 Sum_probs=65.9
Q ss_pred CCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCCCchhHHhh----ccc----cchhcccccCCCCCCCccchhh
Q 008748 396 QKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYD----RGL----IGTVHDWCESFSTYPRTYDLLH 466 (555)
Q Consensus 396 ~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~~~l~~i~~----rgl----~g~~~~~ce~~~typrtydl~h 466 (555)
.... .+|+|++||.|.++.+|.+. |-. .|+-++-+..+...-+ .|+ --+-+|..+ .+|..||++.
T Consensus 165 ~~~~-~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~D~v~ 238 (334)
T 2ip2_A 165 DFRG-RSFVDVGGGSGELTKAILQAEPSA--RGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQ---EVPSNGDIYL 238 (334)
T ss_dssp CCTT-CEEEEETCTTCHHHHHHHHHCTTC--EEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTT---CCCSSCSEEE
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHCCCC--EEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCC---CCCCCCCEEE
Confidence 4445 89999999999999998643 322 3333333444443322 232 223345554 3568899999
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 467 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 467 ~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+.+++..+... ....+|-++-|.|+|||.++|-|
T Consensus 239 ~~~vl~~~~~~--~~~~~l~~~~~~L~pgG~l~i~e 272 (334)
T 2ip2_A 239 LSRIIGDLDEA--ASLRLLGNCREAMAGDGRVVVIE 272 (334)
T ss_dssp EESCGGGCCHH--HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EchhccCCCHH--HHHHHHHHHHHhcCCCCEEEEEE
Confidence 99888644322 23589999999999999999875
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00079 Score=65.23 Aligned_cols=96 Identities=18% Similarity=0.333 Sum_probs=60.7
Q ss_pred cceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cc-cc-hhcccccCCCCCCCccchhhcc-cc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GL-IG-TVHDWCESFSTYPRTYDLLHAW-KV 470 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl-~g-~~~~~ce~~~typrtydl~h~~-~~ 470 (555)
.-.+|+|++||.|.++..|..... +|+-++-. ..|...-++ |+ +- +-.|..+ ++ .+.+||+|.+. +.
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~~~ 115 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE-IA-FKNEFDAVTMFFST 115 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG-CC-CCSCEEEEEECSSG
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhh-cc-cCCCccEEEEcCCc
Confidence 346899999999999999876543 56666653 444443322 32 11 1223333 32 46789999754 22
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
+.... .-....+|-++-|+|+|||.+|+.
T Consensus 116 ~~~~~--~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 116 IMYFD--EEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp GGGSC--HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcCC--HHHHHHHHHHHHHHcCCCeEEEEe
Confidence 22111 113678899999999999999974
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00085 Score=62.67 Aligned_cols=83 Identities=14% Similarity=0.199 Sum_probs=44.2
Q ss_pred Cccchhhcccccccccc----CC---CChhhhhhhhcccccCCceEEEecch-hHHHHHHHHHhhcCccceecccccccc
Q 008748 460 RTYDLLHAWKVFSEIEE----RG---CSFEDLLIEMDRMLRPEGFVIIRDKS-SIINYIRKFITALKWDGWLSEVEPRID 531 (555)
Q Consensus 460 rtydl~h~~~~~s~~~~----~~---c~~~~~~~e~drilrp~g~~i~rd~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~ 531 (555)
.+||+|-++..+..... .. -....++-++-|+|+|||.+++.... +....+...+... |.. +....+..
T Consensus 105 ~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~-f~~-v~~~~~~~- 181 (201)
T 2plw_A 105 KKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGM-FQL-VHTTKPKA- 181 (201)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTT-EEE-EEECCCC--
T ss_pred CcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHH-Hhe-EEEECCcc-
Confidence 68999998775541100 00 00123788899999999999985211 2233444444442 432 12221111
Q ss_pred cCCCCCceEEEEEe
Q 008748 532 ALSSSEERVLIAKK 545 (555)
Q Consensus 532 ~~~~~~~~~l~~~k 545 (555)
......|..+||++
T Consensus 182 ~r~~s~e~y~v~~~ 195 (201)
T 2plw_A 182 SRNESREIYLVCKN 195 (201)
T ss_dssp ----CCEEEEEEEE
T ss_pred cCCcCceEEEEEec
Confidence 11235788999986
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00051 Score=66.93 Aligned_cols=98 Identities=12% Similarity=0.094 Sum_probs=60.9
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cc-----cchhcccccCCCCCCCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GL-----IGTVHDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl-----~g~~~~~ce~~~typrtydl~h~~~~ 470 (555)
..|||++||.|.+|..|.+... -+|+-++.. ..+...-++ |+ .|-..+....|.. .+||.|..+.+
T Consensus 62 ~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~FD~i~~D~~ 137 (236)
T 3orh_A 62 GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPD--GHFDGILYDTY 137 (236)
T ss_dssp EEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCT--TCEEEEEECCC
T ss_pred CeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccc--cCCceEEEeee
Confidence 4699999999999999987642 245555543 455544332 22 1222233334432 58999976665
Q ss_pred ccccc-cCCCChhhhhhhhcccccCCceEEEec
Q 008748 471 FSEIE-ERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 471 ~s~~~-~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
.+... .+.=....++=|+-|+|||||.+++-+
T Consensus 138 ~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 54221 111134578889999999999998753
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0011 Score=67.64 Aligned_cols=121 Identities=14% Similarity=0.176 Sum_probs=77.2
Q ss_pred ccCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCCCchhH----Hhhccccc----hhcccccCCCCCCCccch
Q 008748 394 VAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKI----IYDRGLIG----TVHDWCESFSTYPRTYDL 464 (555)
Q Consensus 394 ~~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~~~l~~----i~~rgl~g----~~~~~ce~~~typrtydl 464 (555)
.+......+|+|++||.|.++.+|.+. |-. .++-++-+..+.. +.+.|+-+ +-+|..++ .|-+||+
T Consensus 164 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~p~~~D~ 238 (332)
T 3i53_A 164 KYDWAALGHVVDVGGGSGGLLSALLTAHEDL--SGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDP---LPAGAGG 238 (332)
T ss_dssp SSCCGGGSEEEEETCTTSHHHHHHHHHCTTC--EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSC---CCCSCSE
T ss_pred hCCCCCCCEEEEeCCChhHHHHHHHHHCCCC--eEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCC---CCCCCcE
Confidence 345566889999999999999988642 321 1222233333332 22335422 23454444 4558999
Q ss_pred hhccccccccccCCCChhhhhhhhcccccCCceEEEecch----------------------hHHHHHHHHHhhcCccc
Q 008748 465 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS----------------------SIINYIRKFITALKWDG 521 (555)
Q Consensus 465 ~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~----------------------~~~~~~~~~~~~~~w~~ 521 (555)
+.+.+++..+... ....+|-++=|.|+|||+++|-|.. ...++++++++.-.++.
T Consensus 239 v~~~~vlh~~~~~--~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 315 (332)
T 3i53_A 239 YVLSAVLHDWDDL--SAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAV 315 (332)
T ss_dssp EEEESCGGGSCHH--HHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEE
T ss_pred EEEehhhccCCHH--HHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEE
Confidence 9999988743321 2468999999999999999987642 11455667777666665
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00028 Score=67.57 Aligned_cols=135 Identities=11% Similarity=0.045 Sum_probs=76.5
Q ss_pred cceeEeeccCCcchhhhhccCC--CceEEEecccCCC-CchhHHhh----ccccc----hhcccccCCCCCC-----Ccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS-ARLKIIYD----RGLIG----TVHDWCESFSTYP-----RTY 462 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~~-~~l~~i~~----rgl~g----~~~~~ce~~~typ-----rty 462 (555)
.-++|+|++||.|.++..|... +- -.|+-++.. ..+.++-+ .|+-. +..|..+.++..+ .+|
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPG--ARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTT--CEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCC--CEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 3468999999999999888652 11 245555543 34443322 24422 2234444445555 689
Q ss_pred chhhccccccccccCCCChhhhhhhhcccccCCceEEEecc-----hhHHHHHHHHHhhcCccceecccccccccCCCCC
Q 008748 463 DLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK-----SSIINYIRKFITALKWDGWLSEVEPRIDALSSSE 537 (555)
Q Consensus 463 dl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~-----~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 537 (555)
|+|..++..... . ....++-++ |+|||||.+++.|- .++++.+++ .=++++.. +. ..-+.....
T Consensus 136 D~V~~d~~~~~~-~---~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~---~~~~~~~~--~~-~~~~~~~~~ 204 (221)
T 3u81_A 136 DMVFLDHWKDRY-L---PDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRG---SSSFECTH--YS-SYLEYMKVV 204 (221)
T ss_dssp SEEEECSCGGGH-H---HHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHH---CTTEEEEE--EE-EEETTTTEE
T ss_pred EEEEEcCCcccc-h---HHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhh---CCCceEEE--cc-cccccCCCC
Confidence 999887755521 1 133566677 99999999998764 334444443 23455421 10 000111234
Q ss_pred ceEEEEEec
Q 008748 538 ERVLIAKKK 546 (555)
Q Consensus 538 ~~~l~~~k~ 546 (555)
+.+.+++++
T Consensus 205 dG~~~~~~~ 213 (221)
T 3u81_A 205 DGLEKAIYQ 213 (221)
T ss_dssp EEEEEEEEC
T ss_pred CceEEEEEe
Confidence 678887764
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00099 Score=68.57 Aligned_cols=101 Identities=14% Similarity=0.190 Sum_probs=63.3
Q ss_pred ccCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCCCchh--HHhhccccc----hhcccccCCCCCCCccchhh
Q 008748 394 VAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLK--IIYDRGLIG----TVHDWCESFSTYPRTYDLLH 466 (555)
Q Consensus 394 ~~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~~~l~--~i~~rgl~g----~~~~~ce~~~typrtydl~h 466 (555)
.+.......|+|++||.|.++.+|.+. |-. .++-++-+..+. .+-+.|+-+ +-+|..+ ..| +||++.
T Consensus 179 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~p-~~D~v~ 252 (348)
T 3lst_A 179 AGDFPATGTVADVGGGRGGFLLTVLREHPGL--QGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLR---EVP-HADVHV 252 (348)
T ss_dssp HSCCCSSEEEEEETCTTSHHHHHHHHHCTTE--EEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTT---CCC-CCSEEE
T ss_pred hCCccCCceEEEECCccCHHHHHHHHHCCCC--EEEEecCHHHhhcccccccCCCCCeEEEecCCCC---CCC-CCcEEE
Confidence 345567889999999999999988642 221 222222221111 001123321 2344443 456 999999
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 467 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 467 ~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+.+++-.+... ....+|-|+-|+|||||.++|-|
T Consensus 253 ~~~vlh~~~d~--~~~~~L~~~~~~LkpgG~l~i~e 286 (348)
T 3lst_A 253 LKRILHNWGDE--DSVRILTNCRRVMPAHGRVLVID 286 (348)
T ss_dssp EESCGGGSCHH--HHHHHHHHHHHTCCTTCEEEEEE
T ss_pred EehhccCCCHH--HHHHHHHHHHHhcCCCCEEEEEE
Confidence 99888643321 23589999999999999999865
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00019 Score=75.97 Aligned_cols=128 Identities=10% Similarity=0.154 Sum_probs=76.5
Q ss_pred HHHHHHHhhhhccCCCcceeEeeccCC------cchhhhhccCC--CceEEEecccCCCCchhHHhhccccchhcccccC
Q 008748 383 RVVDYWKQMKTVAQKNTFRNVMDMNSN------LGGFAAALKDK--DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCES 454 (555)
Q Consensus 383 ~v~~y~~~~~~~~~~~~~rn~~dm~~~------~g~faa~l~~~--~~wvmnv~p~~~~~~l~~i~~rgl~g~~~~~ce~ 454 (555)
-...|.+.|.+... .-.+|||++|| .||.+..|... |- -.|+=++-..... .....+-=+..|- +.
T Consensus 202 y~~~Ye~lL~~l~~--~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~--a~V~GVDiSp~m~-~~~~rI~fv~GDa-~d 275 (419)
T 3sso_A 202 FTPHYDRHFRDYRN--QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPR--GQIYGLDIMDKSH-VDELRIRTIQGDQ-ND 275 (419)
T ss_dssp CHHHHHHHHGGGTT--SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTT--CEEEEEESSCCGG-GCBTTEEEEECCT-TC
T ss_pred HHHHHHHHHHhhcC--CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCC--CEEEEEECCHHHh-hcCCCcEEEEecc-cc
Confidence 34567666654322 34789999999 78877666532 21 1344444321111 0011111111121 11
Q ss_pred CCCC------CCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecc------------------hhHHHHH
Q 008748 455 FSTY------PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK------------------SSIINYI 510 (555)
Q Consensus 455 ~~ty------prtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~------------------~~~~~~~ 510 (555)
+++- ..+||+|.+++... .. .....|-|+=|+|||||.+|+.|- ..+++.+
T Consensus 276 lpf~~~l~~~d~sFDlVisdgsH~--~~---d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~l 350 (419)
T 3sso_A 276 AEFLDRIARRYGPFDIVIDDGSHI--NA---HVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLL 350 (419)
T ss_dssp HHHHHHHHHHHCCEEEEEECSCCC--HH---HHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHH
T ss_pred cchhhhhhcccCCccEEEECCccc--ch---hHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHH
Confidence 1111 36899999876422 12 356789999999999999999643 4579999
Q ss_pred HHHHhhcCccc
Q 008748 511 RKFITALKWDG 521 (555)
Q Consensus 511 ~~~~~~~~w~~ 521 (555)
++++..++|+-
T Consensus 351 k~l~D~l~~~~ 361 (419)
T 3sso_A 351 KSLIDAIQHQE 361 (419)
T ss_dssp HHHHHHHTGGG
T ss_pred HHHHHHhcccc
Confidence 99999999885
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0013 Score=60.14 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=52.0
Q ss_pred CEEEEECCCCc-HHHHHHhc-C--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCC--CCccEEEeccccc
Q 008748 157 RNVLDVGCGVA-SFGAYLLS-H--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPS--RSFELAHCSRCRI 230 (555)
Q Consensus 157 ~~VLDIGCGtG-~~a~~La~-~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d--~sFDlVv~s~~~l 230 (555)
.+|||||||.| ..+..|++ . .|+++|+++..+. ++..|+.+ |..+ +.||+|++.+...
T Consensus 37 ~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~---------------~v~dDiF~-P~~~~Y~~~DLIYsirPP~ 100 (153)
T 2k4m_A 37 TRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG---------------IVRDDITS-PRMEIYRGAALIYSIRPPA 100 (153)
T ss_dssp SEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT---------------EECCCSSS-CCHHHHTTEEEEEEESCCT
T ss_pred CcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc---------------eEEccCCC-CcccccCCcCEEEEcCCCH
Confidence 58999999999 69999986 4 5788888887664 56666544 3222 3799999776432
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEE
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYS 256 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis 256 (555)
+....+.++.+.. |.-++|.
T Consensus 101 ----El~~~i~~lA~~v--~adliI~ 120 (153)
T 2k4m_A 101 ----EIHSSLMRVADAV--GARLIIK 120 (153)
T ss_dssp ----TTHHHHHHHHHHH--TCEEEEE
T ss_pred ----HHHHHHHHHHHHc--CCCEEEE
Confidence 3344555555543 3445553
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0009 Score=69.12 Aligned_cols=143 Identities=17% Similarity=0.147 Sum_probs=83.9
Q ss_pred CCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCCCchhHHh----hcccc----chhcccccCCCCCCCccchhh
Q 008748 396 QKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIY----DRGLI----GTVHDWCESFSTYPRTYDLLH 466 (555)
Q Consensus 396 ~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~~~l~~i~----~rgl~----g~~~~~ce~~~typrtydl~h 466 (555)
....-..|+|++||.|.++.+|.+. |-+ .++-++-+..+...- +.|+- =+-+|..+. .|..||++.
T Consensus 179 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~D~v~ 253 (374)
T 1qzz_A 179 DWSAVRHVLDVGGGNGGMLAAIALRAPHL--RGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKP---LPVTADVVL 253 (374)
T ss_dssp CCTTCCEEEEETCTTSHHHHHHHHHCTTC--EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSC---CSCCEEEEE
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHCCCC--EEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCc---CCCCCCEEE
Confidence 3445679999999999999988643 221 222233233333222 23432 223454443 455699999
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCceEEEecc--h--h-----------------------HHHHHHHHHhhcCc
Q 008748 467 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK--S--S-----------------------IINYIRKFITALKW 519 (555)
Q Consensus 467 ~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~--~--~-----------------------~~~~~~~~~~~~~w 519 (555)
+.+++-.+... ....+|-++-|+|+|||.++|-|. . + ..+++++++..-.+
T Consensus 254 ~~~vl~~~~~~--~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf 331 (374)
T 1qzz_A 254 LSFVLLNWSDE--DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGL 331 (374)
T ss_dssp EESCGGGSCHH--HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTE
T ss_pred EeccccCCCHH--HHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCC
Confidence 98888643221 124799999999999999998765 2 1 24566777777777
Q ss_pred cceecccccccccCCCCCceEEEEEecc
Q 008748 520 DGWLSEVEPRIDALSSSEERVLIAKKKL 547 (555)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~l~~~k~~ 547 (555)
+.. ...+. .+..-.....++.++|.=
T Consensus 332 ~~~-~~~~~-~~~~~~~~~~~i~~~~~~ 357 (374)
T 1qzz_A 332 ALA-SERTS-GSTTLPFDFSILEFTAVS 357 (374)
T ss_dssp EEE-EEEEE-CCSSCSSCEEEEEEEECC
T ss_pred ceE-EEEEC-CCCcccCCcEEEEEEECc
Confidence 652 22111 110000112788888853
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0011 Score=68.44 Aligned_cols=111 Identities=16% Similarity=0.089 Sum_probs=63.9
Q ss_pred HHHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCCCchhH----Hhhccc---cchhcccccCCCC
Q 008748 385 VDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKI----IYDRGL---IGTVHDWCESFST 457 (555)
Q Consensus 385 ~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~~~l~~----i~~rgl---~g~~~~~ce~~~t 457 (555)
..|.+.+...+....=..|||++||.|.++..|..... -.|+-++...-+.. +-+.|+ |-+++.=.+.+ .
T Consensus 50 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~ 126 (340)
T 2fyt_A 50 ESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV-H 126 (340)
T ss_dssp HHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-C
T ss_pred HHHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHh-c
Confidence 34544443322223335799999999999888765532 13444444322332 223344 22333223333 2
Q ss_pred CC-CccchhhccccccccccCCCChhhhhhhhcccccCCceEE
Q 008748 458 YP-RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVI 499 (555)
Q Consensus 458 yp-rtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i 499 (555)
+| .+||+|-+..+...+. ..-.+..+|-++.|+|+|||.+|
T Consensus 127 ~~~~~~D~Ivs~~~~~~l~-~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 127 LPVEKVDVIISEWMGYFLL-FESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CSCSCEEEEEECCCBTTBT-TTCHHHHHHHHHHHHEEEEEEEE
T ss_pred CCCCcEEEEEEcCchhhcc-CHHHHHHHHHHHHhhcCCCcEEE
Confidence 45 7999999876422111 11235678999999999999998
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0022 Score=62.75 Aligned_cols=133 Identities=11% Similarity=0.052 Sum_probs=77.6
Q ss_pred ceeEeeccCCcchhhhhccCC-C-ceEEEecccCC-CCchhHHhhc----cccc----hhcccccCCCCCCC--ccchhh
Q 008748 400 FRNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRM-SARLKIIYDR----GLIG----TVHDWCESFSTYPR--TYDLLH 466 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~-~-~wvmnv~p~~~-~~~l~~i~~r----gl~g----~~~~~ce~~~typr--tydl~h 466 (555)
-++|+|++||.|+++.+|... | - -.|+-++- +..+..+-++ |+-. +..|..+.++..+. +||+|.
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPAD--GQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTT--CEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred CCEEEEecCCchHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 468999999999999888754 1 1 23455554 2444443333 5421 22344443444444 899998
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCceEEEecchh------------HHHHHHHHHhh----cCccceeccccccc
Q 008748 467 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS------------IINYIRKFITA----LKWDGWLSEVEPRI 530 (555)
Q Consensus 467 ~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~------------~~~~~~~~~~~----~~w~~~~~~~~~~~ 530 (555)
++.-.. ....++-++-|+|||||.+++.|..- ....++++... -+|++... .. -
T Consensus 142 ~d~~~~-------~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-~~-~- 211 (248)
T 3tfw_A 142 IDADKP-------NNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATAL-QT-V- 211 (248)
T ss_dssp ECSCGG-------GHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE-EE-C-
T ss_pred ECCchH-------HHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEe-ec-C-
Confidence 765322 24567888899999999999865431 22344444443 35554211 00 0
Q ss_pred ccCCCCCceEEEEEec
Q 008748 531 DALSSSEERVLIAKKK 546 (555)
Q Consensus 531 ~~~~~~~~~~l~~~k~ 546 (555)
.....+.+.+++|+
T Consensus 212 --g~~~~DG~~i~~~~ 225 (248)
T 3tfw_A 212 --GTKGWDGFTLAWVN 225 (248)
T ss_dssp --STTCSEEEEEEEEC
T ss_pred --CCCCCCeeEEEEEe
Confidence 01235789999885
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0003 Score=70.57 Aligned_cols=93 Identities=15% Similarity=0.272 Sum_probs=61.4
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cc-----cch-hcccccCCCCCCCccchhhcc-c
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GL-----IGT-VHDWCESFSTYPRTYDLLHAW-K 469 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl-----~g~-~~~~ce~~~typrtydl~h~~-~ 469 (555)
.|+|++||.|.++..|.... .+|+-++-. ..+...-++ |+ +-+ -.|.. .++. +.+||+|.+. .
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~-~~~~-~~~fD~v~~~~~ 159 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLG---WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS-AFAL-DKRFGTVVISSG 159 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTT---CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT-BCCC-SCCEEEEEECHH
T ss_pred cEEEEeccCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchh-cCCc-CCCcCEEEECCc
Confidence 79999999999999998763 256666643 445444333 21 222 23333 3443 7899988743 4
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
++..+. .-....+|-|+-|+|||||.+++.
T Consensus 160 ~~~~~~--~~~~~~~l~~~~~~L~pgG~l~~~ 189 (299)
T 3g2m_A 160 SINELD--EADRRGLYASVREHLEPGGKFLLS 189 (299)
T ss_dssp HHTTSC--HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccCC--HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 444211 112578999999999999999986
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00097 Score=63.37 Aligned_cols=118 Identities=16% Similarity=0.219 Sum_probs=73.4
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhh----ccc--cchh-cccccCCCC-C-CCccchhhccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYD----RGL--IGTV-HDWCESFST-Y-PRTYDLLHAWK 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~----rgl--~g~~-~~~ce~~~t-y-prtydl~h~~~ 469 (555)
..|+|++||.|.|+.+|... |- .+|+-++-. ..+...-+ .|+ +-++ .|..+ ++. + +.+||+|.++.
T Consensus 43 ~~vLDiGcG~G~~~~~la~~~p~--~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 43 PIHVEVGSGKGAFVSGMAKQNPD--INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD-LTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC-GGGTSCTTCCSEEEEES
T ss_pred CeEEEEccCcCHHHHHHHHHCCC--CCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCCCCCCEEEEEC
Confidence 46999999999999888643 21 256666643 44444322 343 2122 23332 321 2 46899998763
Q ss_pred ccccc----ccCCCChhhhhhhhcccccCCceEEEe-cchhHHHHHHHHHhhcCccc
Q 008748 470 VFSEI----EERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALKWDG 521 (555)
Q Consensus 470 ~~s~~----~~~~c~~~~~~~e~drilrp~g~~i~r-d~~~~~~~~~~~~~~~~w~~ 521 (555)
..... ..++=....+|-++-|+|+|||.+++. |..+....+.+++....|+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~ 176 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKL 176 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCee
Confidence 22100 011223467999999999999999997 45567778877777767765
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00062 Score=64.90 Aligned_cols=95 Identities=15% Similarity=0.121 Sum_probs=58.8
Q ss_pred eeEeeccCCcchhhhhccCC-C-ceEEEecccCCC-CchhHHh----hccccc---hh-cccccCCCCCC-----Cccch
Q 008748 401 RNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRMS-ARLKIIY----DRGLIG---TV-HDWCESFSTYP-----RTYDL 464 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~-~wvmnv~p~~~~-~~l~~i~----~rgl~g---~~-~~~ce~~~typ-----rtydl 464 (555)
.+|+|++||.|.++..|... | - -.|+-++.. ..+...- +.|+-. ++ .|..+.++..+ .+||+
T Consensus 66 ~~vLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLALPKD--GTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTT--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CEEEEeCCcchHHHHHHHHhCCCC--CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 48999999999999988764 1 2 234444432 3333322 224321 22 23333333333 68999
Q ss_pred hhccccccccccCCCChhhhhhhhcccccCCceEEEecch
Q 008748 465 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 504 (555)
Q Consensus 465 ~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~ 504 (555)
|..++-.. ....++-++=|+|||||++++.|-.
T Consensus 144 v~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 144 IYIDADKA-------NTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp EEECSCGG-------GHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EEECCCHH-------HHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 98655322 2566788888999999999987543
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.011 Score=64.84 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc-----------------CCCccccCChhhhhHHHHHHH
Q 008748 134 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----------------HDIIAMSLAPNDVHENQIQFA 196 (555)
Q Consensus 134 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-----------------~~V~~vdis~~dls~a~i~~A 196 (555)
...+.+.+++.. ....+|+|-.||+|.|.....+ ..+.|.|+.+....-+..+..
T Consensus 204 ~Vv~lmv~l~~p--------~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~ 275 (530)
T 3ufb_A 204 PVVRFMVEVMDP--------QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLL 275 (530)
T ss_dssp HHHHHHHHHHCC--------CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc--------CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHH
Confidence 455666666653 2335899999999999766542 247788888877766666655
Q ss_pred HHcCCCeEEEEeCCCCCCC----CCCCccEEEecccccc--c-----------c--cc-hHHHHHHHHhhcC-------C
Q 008748 197 LERGIPSTLGVLGTKRLPY----PSRSFELAHCSRCRID--W-----------L--QR-DGILLLELDRLLR-------P 249 (555)
Q Consensus 197 ~~rg~~v~~~~~d~~~Lp~----~d~sFDlVv~s~~~l~--~-----------~--~d-~~~~L~el~RvLk-------P 249 (555)
........+..+|....|+ ....||+|+++-- +. + . .+ .-.++..+.+.|| |
T Consensus 276 lhg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPP-f~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~ 354 (530)
T 3ufb_A 276 LHGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPP-FGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDN 354 (530)
T ss_dssp HHTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCC-SSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSS
T ss_pred hcCCccccccccccccCchhhhcccccceEEEecCC-CCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCC
Confidence 5443345677777655543 2357999997531 11 0 0 01 1236777888886 7
Q ss_pred CcEEEEEcCCC
Q 008748 250 GGYFVYSSPEA 260 (555)
Q Consensus 250 GG~lvis~P~~ 260 (555)
||++.++.|..
T Consensus 355 gGr~avVlP~g 365 (530)
T 3ufb_A 355 GGRAAVVVPNG 365 (530)
T ss_dssp CCEEEEEEEHH
T ss_pred CceEEEEecch
Confidence 99999999863
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0017 Score=62.15 Aligned_cols=116 Identities=13% Similarity=0.209 Sum_probs=71.5
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHh----hccc--cch-hcccccCCCC-C-CCccchhhccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIY----DRGL--IGT-VHDWCESFST-Y-PRTYDLLHAWK 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~----~rgl--~g~-~~~~ce~~~t-y-prtydl~h~~~ 469 (555)
..|+|++||.|.|+.+|... |- .+|+-++-. .-+...- +.|+ +-+ ..|..+ ++. + +.+||.|+..
T Consensus 40 ~~vLDiGcG~G~~~~~la~~~p~--~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~-l~~~~~~~~~d~v~~~- 115 (213)
T 2fca_A 40 PIHIEVGTGKGQFISGMAKQNPD--INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT-LTDVFEPGEVKRVYLN- 115 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG-HHHHCCTTSCCEEEEE-
T ss_pred ceEEEEecCCCHHHHHHHHHCCC--CCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCcCCcCEEEEE-
Confidence 35999999999999988643 32 256666654 4444332 2354 112 223332 221 2 4688988653
Q ss_pred ccccc------ccCCCChhhhhhhhcccccCCceEEEe-cchhHHHHHHHHHhhcCccc
Q 008748 470 VFSEI------EERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALKWDG 521 (555)
Q Consensus 470 ~~s~~------~~~~c~~~~~~~e~drilrp~g~~i~r-d~~~~~~~~~~~~~~~~w~~ 521 (555)
|+.- ..++-....+|-++-|+|+|||.+++. |..+..+.+.+.+....|+.
T Consensus 116 -~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~ 173 (213)
T 2fca_A 116 -FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLL 173 (213)
T ss_dssp -SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEE
T ss_pred -CCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcc
Confidence 2211 122333468899999999999999987 56666777777766656653
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0015 Score=62.26 Aligned_cols=95 Identities=14% Similarity=0.055 Sum_probs=58.8
Q ss_pred ceeEeeccCCcchhhhhccCC-C-ceEEEecccCCC-CchhHHh----hccccc---h-hcccccCCCCCC----Cccch
Q 008748 400 FRNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRMS-ARLKIIY----DRGLIG---T-VHDWCESFSTYP----RTYDL 464 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~-~-~wvmnv~p~~~~-~~l~~i~----~rgl~g---~-~~~~ce~~~typ----rtydl 464 (555)
-.+|+|++||.|+++.+|... | - ..|+-++-. ..+..+- ..|+-. + ..|..+.++..+ .+||+
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSG--GRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSS--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred CCEEEEecCCccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 358999999999999988754 1 1 145555542 4444332 225422 1 123333222221 56999
Q ss_pred hhccccccccccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 465 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 465 ~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
|..+...+ ....++-++-|+|||||.+++.|.
T Consensus 137 v~~d~~~~-------~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 137 IFIDADKQ-------NNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp EEECSCGG-------GHHHHHHHHHHTCCTTCEEEEESC
T ss_pred EEEcCCcH-------HHHHHHHHHHHhcCCCcEEEEeCC
Confidence 98766433 245778889999999999998643
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.00076 Score=67.41 Aligned_cols=96 Identities=8% Similarity=0.000 Sum_probs=63.1
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhcccc-chhcccccCC----CCCCCccchhhccccccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLI-GTVHDWCESF----STYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl~-g~~~~~ce~~----~typrtydl~h~~~~~s~ 473 (555)
=..|+|++||.|.++..|.+.- -.|+-++.. .-|.+.-++--- .+-.+|.+.- ...+.+||+|-++.++..
T Consensus 46 g~~VLDlGcGtG~~a~~La~~g---~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~ 122 (261)
T 3iv6_A 46 GSTVAVIGASTRFLIEKALERG---ASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLINR 122 (261)
T ss_dssp TCEEEEECTTCHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGGG
T ss_pred cCEEEEEeCcchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhhHh
Confidence 3579999999999999887653 246666644 455554433210 1223343211 122468999999988764
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEe
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
+.. -....++-+|-|+| |||.+++.
T Consensus 123 ~~~--~~~~~~l~~l~~lL-PGG~l~lS 147 (261)
T 3iv6_A 123 FTT--EEARRACLGMLSLV-GSGTVRAS 147 (261)
T ss_dssp SCH--HHHHHHHHHHHHHH-TTSEEEEE
T ss_pred CCH--HHHHHHHHHHHHhC-cCcEEEEE
Confidence 321 13667899999999 99999987
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0043 Score=60.49 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=64.2
Q ss_pred eeEeeccCCcchhhhhccCC-----CceEEEecccCCC-CchhHHhhccc----cchhcccccC--CCCCCC-ccchhhc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMS-ARLKIIYDRGL----IGTVHDWCES--FSTYPR-TYDLLHA 467 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-----~~wvmnv~p~~~~-~~l~~i~~rgl----~g~~~~~ce~--~~typr-tydl~h~ 467 (555)
.+|+|++||.|+.++.|.+. |- -.|+-++-. .-+.+. |++ -=+..|..+. ++..+. +||+|+.
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~--~~V~gvD~s~~~l~~a--~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~ 158 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGID--CQVIGIDRDLSRCQIP--ASDMENITLHQGDCSDLTTFEHLREMAHPLIFI 158 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCC--CEEEEEESCCTTCCCC--GGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCC--CEEEEEeCChHHHHHH--hccCCceEEEECcchhHHHHHhhccCCCCEEEE
Confidence 48999999999999988542 21 123333322 111111 122 1122233332 222222 6999986
Q ss_pred cccccccccCCCChhhhhhhhcc-cccCCceEEEecchh-----HHHHHHHHHhhc--Cccc
Q 008748 468 WKVFSEIEERGCSFEDLLIEMDR-MLRPEGFVIIRDKSS-----IINYIRKFITAL--KWDG 521 (555)
Q Consensus 468 ~~~~s~~~~~~c~~~~~~~e~dr-ilrp~g~~i~rd~~~-----~~~~~~~~~~~~--~w~~ 521 (555)
+.. + -....+|-|+-| +|+|||.+++.|... --..+.++++.. +++.
T Consensus 159 d~~------~-~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~ 213 (236)
T 2bm8_A 159 DNA------H-ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSM 213 (236)
T ss_dssp ESS------C-SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEE
T ss_pred CCc------h-HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEE
Confidence 553 1 257789999998 999999999976311 123567777766 5655
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0028 Score=61.90 Aligned_cols=114 Identities=15% Similarity=0.187 Sum_probs=66.8
Q ss_pred ceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhh----------ccc--cchh-cccccCCC--CCCCcc
Q 008748 400 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYD----------RGL--IGTV-HDWCESFS--TYPRTY 462 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~----------rgl--~g~~-~~~ce~~~--typrty 462 (555)
=..|+|++||.|.|+.+|... |-+ ||+=++-. .-|...-+ .|+ |-++ .|.-+.++ .-+.+|
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~p~~--~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 47 QVEFADIGCGYGGLLVELSPLFPDT--LILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp CEEEEEETCTTCHHHHHHGGGSTTS--EEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCeEEEEccCCcHHHHHHHHHCCCC--eEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 356999999999999998753 322 45555543 33322211 232 1111 22222122 124689
Q ss_pred chhhcccccccc------ccCCCChhhhhhhhcccccCCceEEEe-cchhHHHHHHHHHhhc
Q 008748 463 DLLHAWKVFSEI------EERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITAL 517 (555)
Q Consensus 463 dl~h~~~~~s~~------~~~~c~~~~~~~e~drilrp~g~~i~r-d~~~~~~~~~~~~~~~ 517 (555)
|+|... |..- .++|.....+|-|+-|+|+|||.+++. |.....+.+.+.+..-
T Consensus 125 D~v~~~--~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~ 184 (235)
T 3ckk_A 125 TKMFFL--FPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEH 184 (235)
T ss_dssp EEEEEE--SCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTS
T ss_pred eEEEEe--CCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHC
Confidence 988642 3211 133444568999999999999999985 7777777777766654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.00056 Score=66.10 Aligned_cols=97 Identities=14% Similarity=0.024 Sum_probs=60.9
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhcc----ccchhcccccCC--CCCC--Cccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRG----LIGTVHDWCESF--STYP--RTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rg----l~g~~~~~ce~~--~typ--rtydl~h~~~~~ 471 (555)
..|+|++||.|.++..|...-. +|+-++-. ..+...-++- +--+..|..+.- ..++ ..||+|.+..++
T Consensus 58 ~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~ 134 (245)
T 3ggd_A 58 LPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGF 134 (245)
T ss_dssp SCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSS
T ss_pred CeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcchh
Confidence 4699999999999998865322 56666543 4444443332 111112222210 0111 238999999888
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
..+.. -....+|-|+-|+|+|||.++|-|
T Consensus 135 ~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 135 HHIPV--EKRELLGQSLRILLGKQGAMYLIE 163 (245)
T ss_dssp TTSCG--GGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hcCCH--HHHHHHHHHHHHHcCCCCEEEEEe
Confidence 74321 246789999999999999988765
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0008 Score=63.67 Aligned_cols=92 Identities=18% Similarity=0.094 Sum_probs=57.6
Q ss_pred eeEeeccCCcchhhhhccCC-C-ceEEEecccCCC-CchhHH----hhccccc---hh-cccccCCCCCCCccchhhccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRMS-ARLKII----YDRGLIG---TV-HDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~-~wvmnv~p~~~~-~~l~~i----~~rgl~g---~~-~~~ce~~~typrtydl~h~~~ 469 (555)
++|+|++||.|.++.+|... + - -.|+-++-. ..+.+. -..|+-. ++ .|..+.++..+. ||+|..+.
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISIS--SRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTT--CEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CEEEEEcCCccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 58999999999999888653 1 1 134444432 333322 2234421 22 234343344456 99997653
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
- .-....++-++-|+|+|||.+++.|
T Consensus 135 ~-------~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 135 D-------VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp T-------TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred C-------hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 1 2346788889999999999999965
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.00068 Score=69.55 Aligned_cols=104 Identities=12% Similarity=0.128 Sum_probs=67.0
Q ss_pred cCCCc-ceeEeeccCCcchhhhhccCC-CceEEEecccCCCCchhHHh----hccccc----hhcccccCCCCCCCccch
Q 008748 395 AQKNT-FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIY----DRGLIG----TVHDWCESFSTYPRTYDL 464 (555)
Q Consensus 395 ~~~~~-~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~~~l~~i~----~rgl~g----~~~~~ce~~~typrtydl 464 (555)
+.... ...|+|++||.|.++.+|.+. |-. .++-++-+..+...- +.|+-+ +-+|..+.-...|..||+
T Consensus 174 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~ 251 (352)
T 3mcz_A 174 LGVFARARTVIDLAGGHGTYLAQVLRRHPQL--TGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADV 251 (352)
T ss_dssp CGGGTTCCEEEEETCTTCHHHHHHHHHCTTC--EEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEE
T ss_pred CCCcCCCCEEEEeCCCcCHHHHHHHHhCCCC--eEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccE
Confidence 44445 789999999999999988643 321 222233333443322 234422 334443332125778999
Q ss_pred hhccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 465 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 465 ~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+.+.++|..+... ....+|-++-|.|+|||.++|-|
T Consensus 252 v~~~~vlh~~~~~--~~~~~l~~~~~~L~pgG~l~i~e 287 (352)
T 3mcz_A 252 VMLNDCLHYFDAR--EAREVIGHAAGLVKPGGALLILT 287 (352)
T ss_dssp EEEESCGGGSCHH--HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEecccccCCHH--HHHHHHHHHHHHcCCCCEEEEEE
Confidence 9999988744321 24689999999999999999865
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0017 Score=67.42 Aligned_cols=139 Identities=12% Similarity=0.152 Sum_probs=85.7
Q ss_pred ccCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCCCchhH----Hhhcccc----chhcccccCCCCCCCccch
Q 008748 394 VAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKI----IYDRGLI----GTVHDWCESFSTYPRTYDL 464 (555)
Q Consensus 394 ~~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~~~l~~----i~~rgl~----g~~~~~ce~~~typrtydl 464 (555)
.+......+|+|++||.|.++.+|.+. |-. .++-++-+..+.. +-+.|+- =+-+|..++ +|..||+
T Consensus 197 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~---~p~~~D~ 271 (369)
T 3gwz_A 197 AYDFSGAATAVDIGGGRGSLMAAVLDAFPGL--RGTLLERPPVAEEARELLTGRGLADRCEILPGDFFET---IPDGADV 271 (369)
T ss_dssp HSCCTTCSEEEEETCTTSHHHHHHHHHCTTC--EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTC---CCSSCSE
T ss_pred hCCCccCcEEEEeCCCccHHHHHHHHHCCCC--eEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCC---CCCCceE
Confidence 345567799999999999999998653 211 2222232333332 2233442 223455444 4558999
Q ss_pred hhccccccccccCCCChhhhhhhhcccccCCceEEEecch------------------------hHHHHHHHHHhhcCcc
Q 008748 465 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS------------------------SIINYIRKFITALKWD 520 (555)
Q Consensus 465 ~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~------------------------~~~~~~~~~~~~~~w~ 520 (555)
+-+.+++..+... ....+|-++=|.|+|||.++|-|.. ...++++++++.-.++
T Consensus 272 v~~~~vlh~~~d~--~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~ 349 (369)
T 3gwz_A 272 YLIKHVLHDWDDD--DVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLR 349 (369)
T ss_dssp EEEESCGGGSCHH--HHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEE
T ss_pred EEhhhhhccCCHH--HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCe
Confidence 9998888643221 1236899999999999999986421 1145677778877777
Q ss_pred ceecccccccccCCCCCceEEEEEe
Q 008748 521 GWLSEVEPRIDALSSSEERVLIAKK 545 (555)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~l~~~k 545 (555)
.. .... .......|+.|+|
T Consensus 350 ~~-~~~~-----~~~~~~svie~~~ 368 (369)
T 3gwz_A 350 VE-RSLP-----CGAGPVRIVEIRR 368 (369)
T ss_dssp EE-EEEE-----CSSSSEEEEEEEE
T ss_pred EE-EEEE-----CCCCCcEEEEEEe
Confidence 62 2211 1123467888876
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.00099 Score=65.74 Aligned_cols=62 Identities=10% Similarity=0.069 Sum_probs=44.5
Q ss_pred CccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecchh----------------HHHHHHHHHhhcCccc
Q 008748 460 RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS----------------IINYIRKFITALKWDG 521 (555)
Q Consensus 460 rtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~----------------~~~~~~~~~~~~~w~~ 521 (555)
.+||+|-++.+|..+..+.=++..+|-+|-|+|||||.+|+.+... ..+++.+++..-..++
T Consensus 155 ~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i 232 (263)
T 2a14_A 155 PLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDI 232 (263)
T ss_dssp CCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred CCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEE
Confidence 4899999998887432221235678999999999999999985211 3567777777666654
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.00053 Score=69.97 Aligned_cols=99 Identities=14% Similarity=0.064 Sum_probs=52.7
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCCCchhHHh-h-ccc--cchhcccccCCCCCCCccchhhccccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIY-D-RGL--IGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 475 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~~~l~~i~-~-rgl--~g~~~~~ce~~~typrtydl~h~~~~~s~~~ 475 (555)
..|+|++||.|+|+..|.+. .|.-+-+....++..+..+- + .|. +-+... .+.+..-+.+||+|.++..|+ ..
T Consensus 84 ~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~D~~~l~~~~fD~V~sd~~~~-~g 161 (305)
T 2p41_A 84 GKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSG-VDVFFIPPERCDTLLCDIGES-SP 161 (305)
T ss_dssp EEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECS-CCTTTSCCCCCSEEEECCCCC-CS
T ss_pred CEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHHhhhcCCCCeEEEec-cccccCCcCCCCEEEECCccc-cC
Confidence 58999999999999888775 23222221011111111000 0 011 111111 012221246899999987664 11
Q ss_pred cC---CCChhhhhhhhcccccCCceEEEe
Q 008748 476 ER---GCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 476 ~~---~c~~~~~~~e~drilrp~g~~i~r 501 (555)
.. .-....+|-++-|+|+|||.+++.
T Consensus 162 ~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 162 NPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 00 000114788899999999999985
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0038 Score=63.21 Aligned_cols=99 Identities=22% Similarity=0.292 Sum_probs=63.9
Q ss_pred CcceeEeeccCCcchhhhhccCC-CceEEEecccCCCCchhHHhh----ccccc----hhcccccCCCCCCCccchhhcc
Q 008748 398 NTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYD----RGLIG----TVHDWCESFSTYPRTYDLLHAW 468 (555)
Q Consensus 398 ~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~~~l~~i~~----rgl~g----~~~~~ce~~~typrtydl~h~~ 468 (555)
..-.+|+|++||.|.++.+|.+. |-. .|+-++-+..+...-+ .|+-+ +-+|..+. ..|..||++.+.
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~v~~~ 239 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNA--EIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEV--DYGNDYDLVLLP 239 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTC--EEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTS--CCCSCEEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCC--eEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCcEEEEc
Confidence 45578999999999999998753 322 3444443333332222 24322 22344332 356679999998
Q ss_pred ccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 469 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 469 ~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+++..+... ....+|-++-|+|+|||+++|-|
T Consensus 240 ~~l~~~~~~--~~~~~l~~~~~~L~pgG~l~i~e 271 (335)
T 2r3s_A 240 NFLHHFDVA--TCEQLLRKIKTALAVEGKVIVFD 271 (335)
T ss_dssp SCGGGSCHH--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhccCCHH--HHHHHHHHHHHhCCCCcEEEEEe
Confidence 888744211 24689999999999999988764
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.00052 Score=68.97 Aligned_cols=44 Identities=16% Similarity=0.324 Sum_probs=34.0
Q ss_pred CCCccchhhccccccccc--cCCCChhhhhhhhcccccCCceEEEe
Q 008748 458 YPRTYDLLHAWKVFSEIE--ERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 458 yprtydl~h~~~~~s~~~--~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
.+.+||+|.+.+++..+. .....+..++-++-|+|||||.+|+.
T Consensus 174 ~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~ 219 (292)
T 3g07_A 174 QTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLE 219 (292)
T ss_dssp CCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 457999999988874221 01234778999999999999999996
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.00029 Score=64.68 Aligned_cols=97 Identities=12% Similarity=0.129 Sum_probs=61.1
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHh----hcccc----chhcccccCCCCCCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY----DRGLI----GTVHDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~----~rgl~----g~~~~~ce~~~typrtydl~h~~~~~ 471 (555)
.+|+|++||.|.++.+|...+. -+|+-++-. ..+...- ..|+- =+..|+.+.++..+.+||+|.++..|
T Consensus 33 ~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~ 110 (177)
T 2esr_A 33 GRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 110 (177)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCC
Confidence 4799999999999988876643 245556543 3333322 23332 12234444334445679999988776
Q ss_pred cccccCCCChhhhhhhhc--ccccCCceEEEecch
Q 008748 472 SEIEERGCSFEDLLIEMD--RMLRPEGFVIIRDKS 504 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~d--rilrp~g~~i~rd~~ 504 (555)
.. .....++-++- |+|+|||.+++....
T Consensus 111 ~~-----~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 111 AK-----ETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp HH-----HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred Cc-----chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 41 12345555555 999999999987543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.00055 Score=63.72 Aligned_cols=98 Identities=13% Similarity=0.122 Sum_probs=60.9
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHh----hccc--cchh-cccccCCCCC-CCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY----DRGL--IGTV-HDWCESFSTY-PRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~----~rgl--~g~~-~~~ce~~~ty-prtydl~h~~~~~ 471 (555)
.+|+|++||.|.++.++...+.- .|+-++.. ..+...- ..|+ +-++ .|..+....+ +.+||+|-++..|
T Consensus 46 ~~vLDlgcG~G~~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~ 123 (189)
T 3p9n_A 46 LAVLDLYAGSGALGLEALSRGAA--SVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY 123 (189)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS--EEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred CEEEEeCCCcCHHHHHHHHCCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence 47999999999999866554422 34555543 3343322 2243 1122 2222221112 4789999988776
Q ss_pred cccccCCCChhhhhhhhcc--cccCCceEEEecc
Q 008748 472 SEIEERGCSFEDLLIEMDR--MLRPEGFVIIRDK 503 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~dr--ilrp~g~~i~rd~ 503 (555)
..... .+..++-++-| +|+|||.+++...
T Consensus 124 ~~~~~---~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 124 NVDSA---DVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp TSCHH---HHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred Ccchh---hHHHHHHHHHhcCccCCCeEEEEEec
Confidence 63211 36788899988 9999999999754
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.00075 Score=64.04 Aligned_cols=115 Identities=10% Similarity=0.189 Sum_probs=71.8
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc-cc--------------cchhcccccCCCCCC----C
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR-GL--------------IGTVHDWCESFSTYP----R 460 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r-gl--------------~g~~~~~ce~~~typ----r 460 (555)
..|+|++||.|.++..|.+.. ..|+-+|-+ .-|...-+| ++ ..-..=.|..+...| .
T Consensus 24 ~~vLD~GCG~G~~~~~la~~g---~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 100 (203)
T 1pjz_A 24 ARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIG 100 (203)
T ss_dssp CEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHH
T ss_pred CEEEEeCCCCcHhHHHHHHCC---CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCC
Confidence 479999999999999997653 257777644 555555444 11 011111233333333 6
Q ss_pred ccchhhccccccccccCCCChhhhhhhhcccccCCce--EEEecch----------hHHHHHHHHHhhcCccc
Q 008748 461 TYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGF--VIIRDKS----------SIINYIRKFITALKWDG 521 (555)
Q Consensus 461 tydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~--~i~rd~~----------~~~~~~~~~~~~~~w~~ 521 (555)
+||+|-+.+.|..+.. -....++-||-|+|||||. ++.-+.. -..++++.++.. .|++
T Consensus 101 ~fD~v~~~~~l~~l~~--~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i 170 (203)
T 1pjz_A 101 HCAAFYDRAAMIALPA--DMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEV 170 (203)
T ss_dssp SEEEEEEESCGGGSCH--HHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEE
T ss_pred CEEEEEECcchhhCCH--HHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEE
Confidence 8999988777764321 1244678999999999998 3332211 125777887776 6765
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0031 Score=61.68 Aligned_cols=97 Identities=9% Similarity=0.094 Sum_probs=56.1
Q ss_pred ceeEeeccCCcchhhhhccCC-----CceEEEecccCCCCchhHHhhcccc---chh-cccccCCCCC-----CCccchh
Q 008748 400 FRNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDRGLI---GTV-HDWCESFSTY-----PRTYDLL 465 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~-----~~wvmnv~p~~~~~~l~~i~~rgl~---g~~-~~~ce~~~ty-----prtydl~ 465 (555)
-++|+|++||.|.++.+|... .|..+-+-|......-..+-..|+- -++ .|..+.++.. +.+||+|
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 468999999999998887642 2232222222111111223333542 122 2322333333 4789999
Q ss_pred hccccccccccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 466 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 466 h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
..+.-.. ....++-++-|+|||||.+++.|.
T Consensus 141 ~~d~~~~-------~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 141 FIDADKT-------NYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp EEESCGG-------GHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEcCChH-------HhHHHHHHHHHhcCCCeEEEEECC
Confidence 8765422 245577788899999999998643
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.00079 Score=64.43 Aligned_cols=90 Identities=14% Similarity=0.237 Sum_probs=58.0
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc-----cccchhcccccCCCCCCCccchhhccccccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR-----GLIGTVHDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r-----gl~g~~~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
-.+|+|++||.|.++..|...- -+|+-++-. ..+...-++ .+--+..|..+.++ -+.+||+|.+++.+..
T Consensus 71 ~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~~~ 146 (231)
T 1vbf_A 71 GQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-EEKPYDRVVVWATAPT 146 (231)
T ss_dssp TCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG-GGCCEEEEEESSBBSS
T ss_pred CCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc-cCCCccEEEECCcHHH
Confidence 3489999999999999887643 245555543 444444333 12122234444222 2368999998887763
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
+ .-++-|+|+|||.+++-..
T Consensus 147 ~----------~~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 147 L----------LCKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp C----------CHHHHHTEEEEEEEEEEEC
T ss_pred H----------HHHHHHHcCCCcEEEEEEc
Confidence 2 2378899999999998754
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.061 Score=54.41 Aligned_cols=98 Identities=16% Similarity=0.214 Sum_probs=60.4
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCC-eEEEEe-CCCCCCCCCCCccEEEeccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP-STLGVL-GTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~-v~~~~~-d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
.+|||+||++|.|+.+.+.. .|.++|+-.....+.+. ..+.+-+ +.+... |+..++. ..+|+|+|--.
T Consensus 96 ~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~--~~ql~w~lV~~~~~~Dv~~l~~--~~~D~ivcDig-- 169 (321)
T 3lkz_A 96 GKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQL--VQSYGWNIVTMKSGVDVFYRPS--ECCDTLLCDIG-- 169 (321)
T ss_dssp EEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCC--CCBTTGGGEEEECSCCTTSSCC--CCCSEEEECCC--
T ss_pred CEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcch--hhhcCCcceEEEeccCHhhCCC--CCCCEEEEECc--
Confidence 48999999999999987753 57788887653311100 0011111 455555 6666654 56999998432
Q ss_pred ccccch----HH---HHHHHHhhcCCC-cEEEEEcCCC
Q 008748 231 DWLQRD----GI---LLLELDRLLRPG-GYFVYSSPEA 260 (555)
Q Consensus 231 ~~~~d~----~~---~L~el~RvLkPG-G~lvis~P~~ 260 (555)
+-.+++ .. +|.-+.+.|++| |-|++-+-..
T Consensus 170 eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 170 ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 222222 11 566667889999 8998866443
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0017 Score=65.91 Aligned_cols=99 Identities=8% Similarity=0.058 Sum_probs=59.9
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----ccc------c-hh-cccc------cCCC-CC-C
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GLI------G-TV-HDWC------ESFS-TY-P 459 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl~------g-~~-~~~c------e~~~-ty-p 459 (555)
..|+|++||.|+.+..+.....+ +|+=+|-+ .-|.+.-+| |+- . .| ...+ +.+. .+ +
T Consensus 50 ~~VLDlGCG~G~~l~~~~~~~~~--~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 50 RKVLAIDFGNGADLEKYFYGEIA--LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp CEEEETTCTTTTTHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CeEEEEecCCcHhHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 57999999999977766544433 46666654 555554433 220 0 01 1112 2211 12 4
Q ss_pred CccchhhccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 460 RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 460 rtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
.+||+|-+...+-..... -....+|-||-|+|||||.+|+..
T Consensus 128 ~~FD~V~~~~~lhy~~~~-~~~~~~l~~~~r~LkpGG~~i~~~ 169 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHP-RHYATVMNNLSELTASGGKVLITT 169 (302)
T ss_dssp SCEEEEEEESCGGGTCST-TTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCeeEEEECchHHHhCCH-HHHHHHHHHHHHHcCCCCEEEEEe
Confidence 799999766544211111 135789999999999999999864
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.001 Score=66.13 Aligned_cols=98 Identities=15% Similarity=0.174 Sum_probs=58.4
Q ss_pred eEeeccCCcchhhhhccCC---CceEEEecccCCC-CchhHHh----hccccchhcccccCCCCCC-Cccchhhcccccc
Q 008748 402 NVMDMNSNLGGFAAALKDK---DVWVMNVAPVRMS-ARLKIIY----DRGLIGTVHDWCESFSTYP-RTYDLLHAWKVFS 472 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~---~~wvmnv~p~~~~-~~l~~i~----~rgl~g~~~~~ce~~~typ-rtydl~h~~~~~s 472 (555)
+|+|++||.|.++.+|... +-+ +|+=++-. .-|...- +.|+..-..=.|.-+..+| ..||++-+..++.
T Consensus 73 ~vLDlGcGtG~~~~~la~~~~~~~~--~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~l~ 150 (261)
T 4gek_A 73 QVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ 150 (261)
T ss_dssp EEEEETCTTTHHHHHHHHTCCSSSC--EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESCGG
T ss_pred EEEEEeCCCCHHHHHHHHhcCCCCC--EEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeeeee
Confidence 6999999999998877532 222 34555533 3444322 2344222211222222222 3699998776665
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
.+.. -....+|-||-|+|||||.+|+.|.
T Consensus 151 ~~~~--~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 151 FLEP--SERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp GSCH--HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ecCc--hhHhHHHHHHHHHcCCCcEEEEEec
Confidence 3211 1234689999999999999999753
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0019 Score=63.93 Aligned_cols=115 Identities=14% Similarity=0.128 Sum_probs=72.4
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc-cc-------------------cchhcccccCCCCCC
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR-GL-------------------IGTVHDWCESFSTYP 459 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r-gl-------------------~g~~~~~ce~~~typ 459 (555)
..|+|++||.|.++..|.+.- + +|+-++-+ .-+....++ ++ -+-..=.|..+...|
T Consensus 70 ~~vLD~GCG~G~~~~~La~~G-~--~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~ 146 (252)
T 2gb4_A 70 LRVFFPLCGKAIEMKWFADRG-H--TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP 146 (252)
T ss_dssp CEEEETTCTTCTHHHHHHHTT-C--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred CeEEEeCCCCcHHHHHHHHCC-C--eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence 469999999999999998763 2 57777754 444444332 11 011111222232322
Q ss_pred ----CccchhhccccccccccCCCChhhhhhhhcccccCCceEEEec---------c---hhHHHHHHHHHhhcCccc
Q 008748 460 ----RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD---------K---SSIINYIRKFITALKWDG 521 (555)
Q Consensus 460 ----rtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd---------~---~~~~~~~~~~~~~~~w~~ 521 (555)
.+||+|-+.++|..+. ......++-||-|+|||||.+++-. . .-..++++.++.. .|++
T Consensus 147 ~~~~~~FD~V~~~~~l~~l~--~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v 221 (252)
T 2gb4_A 147 RANIGKFDRIWDRGALVAIN--PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSM 221 (252)
T ss_dssp GGCCCCEEEEEESSSTTTSC--GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEE
T ss_pred cccCCCEEEEEEhhhhhhCC--HHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEE
Confidence 6899999888776442 1235678999999999999986321 0 0125777888776 4776
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.006 Score=59.72 Aligned_cols=99 Identities=11% Similarity=0.110 Sum_probs=56.9
Q ss_pred ceeEeeccCCcchhhhhccCC--C-ceEEEecccCC----CCchhHHhh----ccc---cchh-cc-cc-cCCCCCCCcc
Q 008748 400 FRNVMDMNSNLGGFAAALKDK--D-VWVMNVAPVRM----SARLKIIYD----RGL---IGTV-HD-WC-ESFSTYPRTY 462 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~--~-~wvmnv~p~~~----~~~l~~i~~----rgl---~g~~-~~-~c-e~~~typrty 462 (555)
=.+|+|++||.|.++..|.+. | .=|.-|=+... +..+...-+ .|+ +-+. .| .. +..+.-+.+|
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~f 123 (275)
T 3bkx_A 44 GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHF 123 (275)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCCC
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCCE
Confidence 358999999999999888753 2 33333322221 125554322 233 1111 12 21 1222224799
Q ss_pred chhhccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 463 DLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 463 dl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
|+|++.+++..... ...++-.+.++++|||.+++.+
T Consensus 124 D~v~~~~~l~~~~~----~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 124 DRVVLAHSLWYFAS----ANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp SEEEEESCGGGSSC----HHHHHHHHHHHTTTCSEEEEEE
T ss_pred EEEEEccchhhCCC----HHHHHHHHHHHhCCCCEEEEEE
Confidence 99999998874432 3444555566666799999953
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0023 Score=62.35 Aligned_cols=114 Identities=14% Similarity=0.217 Sum_probs=65.4
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhc------------cccch---hcccccCCCC-C-CCc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR------------GLIGT---VHDWCESFST-Y-PRT 461 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~r------------gl~g~---~~~~ce~~~t-y-prt 461 (555)
..|+|++||.|+|+.+|... |- .+|+-++.. .-+..+-++ |+-.+ -.|..+.++. + +.+
T Consensus 51 ~~vLDiGcG~G~~~~~la~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 51 VTIADIGCGFGGLMIDLSPAFPE--DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp EEEEEETCTTSHHHHHHHHHSTT--SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CEEEEEcCCCCHHHHHHHHhCCC--CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 57999999999999888642 21 256666643 333333221 44221 1222222221 1 346
Q ss_pred cchhhccccccccc------cCCCChhhhhhhhcccccCCceEEE-ecchhHHHHHHHHHhhcC
Q 008748 462 YDLLHAWKVFSEIE------ERGCSFEDLLIEMDRMLRPEGFVII-RDKSSIINYIRKFITALK 518 (555)
Q Consensus 462 ydl~h~~~~~s~~~------~~~c~~~~~~~e~drilrp~g~~i~-rd~~~~~~~~~~~~~~~~ 518 (555)
+|.|.. +|+... .++--...++-++-|+|+|||.+++ -|..+..+.+.+.+..-.
T Consensus 129 ~d~v~~--~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 190 (246)
T 2vdv_E 129 LSKMFF--CFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHP 190 (246)
T ss_dssp EEEEEE--ESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHST
T ss_pred cCEEEE--ECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCc
Confidence 776652 122111 1122235899999999999999998 477766777776665543
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.006 Score=63.67 Aligned_cols=105 Identities=17% Similarity=0.122 Sum_probs=68.3
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC-------CCeEEEEeCCCCCC-CCCCCccE
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG-------IPSTLGVLGTKRLP-YPSRSFEL 222 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg-------~~v~~~~~d~~~Lp-~~d~sFDl 222 (555)
.+.+|||+.||.|+=+.+|++. .|+++|++..-+.... +.....+ .++.+...|...++ ...+.||.
T Consensus 148 pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~-~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~ 226 (359)
T 4fzv_A 148 PGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQ-KILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDR 226 (359)
T ss_dssp TTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHH-HHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEE
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHH-HHHHHhhhhhhccCCceEEEeCchhhcchhccccCCE
Confidence 3468999999999988888763 5778888775443332 2222222 35677777776654 34578999
Q ss_pred EEe----ccc---ccc------cccc----------hHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 223 AHC----SRC---RID------WLQR----------DGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 223 Vv~----s~~---~l~------~~~d----------~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
|++ +.. .+. +... ...+|....+.|||||+++.++-..
T Consensus 227 VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 227 VLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp EEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred EEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 995 321 111 1101 1247888999999999999988654
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0045 Score=58.37 Aligned_cols=137 Identities=13% Similarity=0.068 Sum_probs=68.9
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCCCchhHHhhccccchhcccccCCCC-------CC----Cccchhhcc
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFST-------YP----RTYDLLHAW 468 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~~~l~~i~~rgl~g~~~~~ce~~~t-------yp----rtydl~h~~ 468 (555)
-.+|+|++||.|+|+..|.+... .|+-++-....+ ..|+-=+-.|..+. .+ .+ .+||+|-++
T Consensus 26 g~~VLDlG~G~G~~s~~la~~~~---~V~gvD~~~~~~---~~~v~~~~~D~~~~-~~~~~~~~~~~~~~~~~~D~Vlsd 98 (191)
T 3dou_A 26 GDAVIEIGSSPGGWTQVLNSLAR---KIISIDLQEMEE---IAGVRFIRCDIFKE-TIFDDIDRALREEGIEKVDDVVSD 98 (191)
T ss_dssp TCEEEEESCTTCHHHHHHTTTCS---EEEEEESSCCCC---CTTCEEEECCTTSS-SHHHHHHHHHHHHTCSSEEEEEEC
T ss_pred CCEEEEEeecCCHHHHHHHHcCC---cEEEEecccccc---CCCeEEEEccccCH-HHHHHHHHHhhcccCCcceEEecC
Confidence 36899999999999999987632 233232211000 01222222333221 10 11 378998876
Q ss_pred ccccccc-------cCCCChhhhhhhhcccccCCceEEEecc-hhHHHHHHHHHhhcCccceecccccccccCCCCCceE
Q 008748 469 KVFSEIE-------ERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERV 540 (555)
Q Consensus 469 ~~~s~~~-------~~~c~~~~~~~e~drilrp~g~~i~rd~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 540 (555)
.-..... ...-..+.++-++-|+|||||.+++.-. ..-...+...++.. ++. +....+... -+.+.|..
T Consensus 99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~-F~~-v~~~kP~as-R~~s~E~y 175 (191)
T 3dou_A 99 AMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKN-FSS-YKISKPPAS-RGSSSEIY 175 (191)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGG-EEE-EEEECC-------CCEEE
T ss_pred CCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHh-cCE-EEEECCCCc-cCCCceEE
Confidence 5322000 0000124677888999999999997531 11133444444432 432 223222221 22468999
Q ss_pred EEEEec
Q 008748 541 LIAKKK 546 (555)
Q Consensus 541 l~~~k~ 546 (555)
+||++.
T Consensus 176 ~v~~~~ 181 (191)
T 3dou_A 176 IMFFGF 181 (191)
T ss_dssp EEEEEE
T ss_pred EEEeee
Confidence 999763
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0024 Score=67.05 Aligned_cols=98 Identities=10% Similarity=0.062 Sum_probs=62.8
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHc-------------CCCeEEEEeCCCCC----C
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-------------GIPSTLGVLGTKRL----P 214 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~r-------------g~~v~~~~~d~~~L----p 214 (555)
++++||=||.|.|..++.+++. .|+.+|+++.-+ +.+++. ..++.+...|.... .
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VV-----e~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~ 279 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVI-----DGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYA 279 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHH-----HHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHH
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHH-----HHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhh
Confidence 3579999999999999999874 466666666544 444432 12357777775322 1
Q ss_pred CCCCCccEEEecccccccccc---------hHHHHHHHHhhcCCCcEEEEEc
Q 008748 215 YPSRSFELAHCSRCRIDWLQR---------DGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 215 ~~d~sFDlVv~s~~~l~~~~d---------~~~~L~el~RvLkPGG~lvis~ 257 (555)
-..+.||+|+.-..--....+ ...+++.+.++|+|||.++.-.
T Consensus 280 ~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 280 KEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp HHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 234679999953100000011 1457889999999999998743
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0014 Score=66.81 Aligned_cols=94 Identities=13% Similarity=0.064 Sum_probs=58.4
Q ss_pred ceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHh----hccccchhcccccCCCCC-CCccchhhcccccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIY----DRGLIGTVHDWCESFSTY-PRTYDLLHAWKVFS 472 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~----~rgl~g~~~~~ce~~~ty-prtydl~h~~~~~s 472 (555)
=..|+|++||.|+++|.+..+ +- -.|+-++-. ..+...- +.|+ .-..--|.....+ ..+||+|....+-
T Consensus 123 g~rVLDIGcG~G~~ta~~lA~~~g--a~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~d~~FDvV~~~a~~- 198 (298)
T 3fpf_A 123 GERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVIDGLEFDVLMVAALA- 198 (298)
T ss_dssp TCEEEEECCCSSCHHHHHHHHTTC--CEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGGGCCCSEEEECTTC-
T ss_pred cCEEEEECCCccHHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCCCCCcCEEEECCCc-
Confidence 358999999999998665321 21 245555543 4444332 2365 2111112211222 4799999765431
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
-+...++-|+-|+|||||.+++++.
T Consensus 199 ------~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 199 ------EPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp ------SCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred ------cCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 2467899999999999999999974
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0011 Score=63.52 Aligned_cols=93 Identities=22% Similarity=0.269 Sum_probs=53.2
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-Cc----hhHHhhc-cccchhcccccC--CCCCCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-AR----LKIIYDR-GLIGTVHDWCES--FSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~----l~~i~~r-gl~g~~~~~ce~--~~typrtydl~h~~~~~ 471 (555)
.+|+|++||.|.++..|.+. +- -.|+-++-. .- +...-.+ ++.-+..|-.+. +...+.+||+|-++-
T Consensus 59 ~~VLDlGcGtG~~~~~la~~~~~--~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~-- 134 (210)
T 1nt2_A 59 ERVLYLGAASGTTVSHLADIVDE--GIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI-- 134 (210)
T ss_dssp CEEEEETCTTSHHHHHHHHHTTT--SEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC--
T ss_pred CEEEEECCcCCHHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEec--
Confidence 37999999999998876542 10 134444433 11 1111112 222223344332 123457999998762
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
. .. =....++-|+-|+|||||.+++-
T Consensus 135 ~---~~-~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 135 A---QK-NQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp C---ST-THHHHHHHHHHHHEEEEEEEEEE
T ss_pred c---Ch-hHHHHHHHHHHHHhCCCCEEEEE
Confidence 2 11 11334588999999999999985
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.00092 Score=62.99 Aligned_cols=90 Identities=17% Similarity=0.124 Sum_probs=57.1
Q ss_pred cceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----ccc--ch-hcccccCCCCCCCccchhhcccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GLI--GT-VHDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl~--g~-~~~~ce~~~typrtydl~h~~~~ 470 (555)
.-.+|+|++||.|.+++.|.... -+|+-++-. ..+...-++ |+- -+ ..|..+.+. -..+||+|.++..
T Consensus 77 ~~~~vLdiG~G~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~i~~~~~ 152 (210)
T 3lbf_A 77 PQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ-ARAPFDAIIVTAA 152 (210)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-GGCCEEEEEESSB
T ss_pred CCCEEEEEcCCCCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc-cCCCccEEEEccc
Confidence 34579999999999999887652 345555543 444433332 431 12 223333222 2468999999877
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+..+. =++-|+|+|||.+++--
T Consensus 153 ~~~~~----------~~~~~~L~pgG~lv~~~ 174 (210)
T 3lbf_A 153 PPEIP----------TALMTQLDEGGILVLPV 174 (210)
T ss_dssp CSSCC----------THHHHTEEEEEEEEEEE
T ss_pred hhhhh----------HHHHHhcccCcEEEEEE
Confidence 76322 16789999999999854
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0029 Score=61.26 Aligned_cols=98 Identities=16% Similarity=0.088 Sum_probs=53.9
Q ss_pred eeEeeccCCcchhhhhccC-CCceEEEecccCCC-Cch-hH-------Hhhccccch--hcccccCCCC-CCCccchhhc
Q 008748 401 RNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMS-ARL-KI-------IYDRGLIGT--VHDWCESFST-YPRTYDLLHA 467 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~-~~~wvmnv~p~~~~-~~l-~~-------i~~rgl~g~--~~~~ce~~~t-yprtydl~h~ 467 (555)
..|+|++||.|.++..|.. .+- .+|+=+|.. ..+ .+ +.+.|+-.+ .+.=.+.++. +.-.+|.++.
T Consensus 26 ~~vLDiGCG~G~~~~~la~~~~~--~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~ 103 (225)
T 3p2e_A 26 RVHIDLGTGDGRNIYKLAINDQN--TFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISI 103 (225)
T ss_dssp EEEEEETCTTSHHHHHHHHTCTT--EEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred CEEEEEeccCcHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence 5799999999999999872 333 346666644 444 22 123455322 1111223321 1133444443
Q ss_pred ccccccc-ccCCCChhhhhhhhcccccCCceEEE
Q 008748 468 WKVFSEI-EERGCSFEDLLIEMDRMLRPEGFVII 500 (555)
Q Consensus 468 ~~~~s~~-~~~~c~~~~~~~e~drilrp~g~~i~ 500 (555)
..-+... ...+-....+|-||-|+|||||.+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 104 LFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp ESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred eCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 2211110 01112245689999999999999999
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.002 Score=61.97 Aligned_cols=93 Identities=14% Similarity=0.233 Sum_probs=60.7
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhc----cc---cc-hhcccccCCCCC--CCccchhhcc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR----GL---IG-TVHDWCESFSTY--PRTYDLLHAW 468 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~r----gl---~g-~~~~~ce~~~ty--prtydl~h~~ 468 (555)
.+|+|++||.|.++..|... |- -+|+-++.. ..+...-++ |+ |- +..|..+..+.. +.+||+|-++
T Consensus 56 ~~vLdiG~G~G~~~~~la~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 56 ARILEIGTAIGYSAIRMAQALPE--ATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp SEEEEECCTTSHHHHHHHHHCTT--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CEEEEecCCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 48999999999999888643 21 245555543 444443333 43 21 223444322222 4689999876
Q ss_pred ccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 469 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 469 ~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
..++ ....++-++-|+|+|||.+++.|
T Consensus 134 ~~~~-------~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 134 AAKG-------QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp GGGS-------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCHH-------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 6543 36788899999999999999975
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0025 Score=69.00 Aligned_cols=95 Identities=14% Similarity=0.163 Sum_probs=60.7
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCCCchh----HHhhccc---cchh-cccccCCCCCCCccchhhccccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLK----IIYDRGL---IGTV-HDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~~~l~----~i~~rgl---~g~~-~~~ce~~~typrtydl~h~~~~~ 471 (555)
-..|+|++||.|.++..|...+.. .|+-++....+. .+.+.|| |-+. .|+-+ + .+|..||+|-+..++
T Consensus 159 ~~~VLDiGcGtG~la~~la~~~~~--~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~-~-~~~~~fD~Ivs~~~~ 234 (480)
T 3b3j_A 159 DKIVLDVGCGSGILSFFAAQAGAR--KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEE-V-SLPEQVDIIISEPMG 234 (480)
T ss_dssp TCEEEEESCSTTHHHHHHHHTTCS--EEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTT-C-CCSSCEEEEECCCCH
T ss_pred CCEEEEecCcccHHHHHHHHcCCC--EEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhh-C-ccCCCeEEEEEeCch
Confidence 358999999999999888765432 344444332222 2344465 2222 23333 2 356789999987765
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEE
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVII 500 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~ 500 (555)
..+.. -.+..++.++-|+|+|||.+++
T Consensus 235 ~~~~~--e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 235 YMLFN--ERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HHHTC--HHHHHHHHHGGGGEEEEEEEES
T ss_pred HhcCc--HHHHHHHHHHHHhcCCCCEEEE
Confidence 43221 1356778899999999999984
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.00079 Score=60.78 Aligned_cols=94 Identities=9% Similarity=0.142 Sum_probs=56.5
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----ccc-cch-hcccccCCCCCC---Cccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGL-IGT-VHDWCESFSTYP---RTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl-~g~-~~~~ce~~~typ---rtydl~h~~~~ 470 (555)
.+|+|++||.|.++.+|...-. +|+-++.. ..+...-+ .|+ +-+ ..|+.+..+..+ .+||+|.++..
T Consensus 43 ~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 119 (171)
T 1ws6_A 43 GRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp CEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCC
Confidence 4799999999999988865421 25555543 33333222 232 111 123333222222 27999999887
Q ss_pred ccccccCCCChhhhhhhhc--ccccCCceEEEecc
Q 008748 471 FSEIEERGCSFEDLLIEMD--RMLRPEGFVIIRDK 503 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~d--rilrp~g~~i~rd~ 503 (555)
|. . ....++-++- |+|+|||.+++...
T Consensus 120 ~~---~---~~~~~~~~~~~~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 120 YA---M---DLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp TT---S---CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred Cc---h---hHHHHHHHHHhhcccCCCcEEEEEeC
Confidence 75 1 2445566666 99999999998643
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0026 Score=65.34 Aligned_cols=102 Identities=24% Similarity=0.368 Sum_probs=64.7
Q ss_pred CCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCCCchhHHh----hcccc----chhcccccCCCCCCCccchhh
Q 008748 396 QKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIY----DRGLI----GTVHDWCESFSTYPRTYDLLH 466 (555)
Q Consensus 396 ~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~~~l~~i~----~rgl~----g~~~~~ce~~~typrtydl~h 466 (555)
....-.+|+|++||.|.++.+|... |-+ .++-++-+..+...- +.|+- =+-+|+.+. .|..||++-
T Consensus 180 ~~~~~~~vLDvG~G~G~~~~~l~~~~~~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~D~v~ 254 (360)
T 1tw3_A 180 DWTNVRHVLDVGGGKGGFAAAIARRAPHV--SATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP---LPRKADAII 254 (360)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTC--EEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC---CSSCEEEEE
T ss_pred CCccCcEEEEeCCcCcHHHHHHHHhCCCC--EEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCC---CCCCccEEE
Confidence 3345678999999999999888643 222 222233233444322 23432 233455543 456799999
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCceEEEecch
Q 008748 467 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 504 (555)
Q Consensus 467 ~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~ 504 (555)
+.++|..+... ....+|-++-|+|+|||.++|-|..
T Consensus 255 ~~~vl~~~~~~--~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 255 LSFVLLNWPDH--DAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp EESCGGGSCHH--HHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EcccccCCCHH--HHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 88887643221 1257899999999999999987643
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0032 Score=64.90 Aligned_cols=101 Identities=15% Similarity=0.296 Sum_probs=64.1
Q ss_pred cCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCCCchhHHhh----ccccc----hhcccccCCCCCCCccchh
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYD----RGLIG----TVHDWCESFSTYPRTYDLL 465 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~~~l~~i~~----rgl~g----~~~~~ce~~~typrtydl~ 465 (555)
+....-.+|+|++||.|.++.+|.+. |-. .|+-+|-+..+...-+ .|+-+ +-+|..+. .+|. +|++
T Consensus 186 ~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~-~D~v 260 (359)
T 1x19_A 186 AKLDGVKKMIDVGGGIGDISAAMLKHFPEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKE--SYPE-ADAV 260 (359)
T ss_dssp CCCTTCCEEEEESCTTCHHHHHHHHHCTTC--EEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTS--CCCC-CSEE
T ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCCC--eEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccC--CCCC-CCEE
Confidence 34456789999999999999998643 211 2222333334443332 25432 23444432 2333 4999
Q ss_pred hccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 466 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 466 h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
.+..+|..+.. -....+|-++-|+|+|||.++|-|
T Consensus 261 ~~~~vlh~~~d--~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 261 LFCRILYSANE--QLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp EEESCGGGSCH--HHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred EEechhccCCH--HHHHHHHHHHHHhcCCCCEEEEEe
Confidence 99888864322 125788999999999999998866
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.017 Score=56.80 Aligned_cols=120 Identities=11% Similarity=0.116 Sum_probs=71.7
Q ss_pred cceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHh----h---ccc---cchhc-ccccCCC-----CC-C
Q 008748 399 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIY----D---RGL---IGTVH-DWCESFS-----TY-P 459 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~----~---rgl---~g~~~-~~ce~~~-----ty-p 459 (555)
.-.+|+|++||.|.++..|... |- .+|+-++-. ..+...- . .|+ +-+++ |..+..+ .+ +
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEK--AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTT--EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 3458999999999998777543 22 345555543 3232221 1 233 22222 2222111 12 4
Q ss_pred Cccchhhcccccccc--------------ccCCCChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcCccc
Q 008748 460 RTYDLLHAWKVFSEI--------------EERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDG 521 (555)
Q Consensus 460 rtydl~h~~~~~s~~--------------~~~~c~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~w~~ 521 (555)
.+||+|-++--|... ....+.+..++-++-|+|+|||.+++--..+.+.++.+.+..- |..
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~ 188 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGG 188 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCc
Confidence 689999988444311 1123668899999999999999998766666677777777763 664
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0035 Score=61.48 Aligned_cols=133 Identities=14% Similarity=0.135 Sum_probs=69.5
Q ss_pred eeEeeccCCcchhhhhccCC---CceEEEecccCCC-Cch----hHHhhc-cccchhcccccCC--CCCCCccchhhccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK---DVWVMNVAPVRMS-ARL----KIIYDR-GLIGTVHDWCESF--STYPRTYDLLHAWK 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~---~~wvmnv~p~~~~-~~l----~~i~~r-gl~g~~~~~ce~~--~typrtydl~h~~~ 469 (555)
-.|+|++||.|++++.|.+. .- .|+-++-. .-+ ...-+| .+.-+..|-.++. ...+.+||+|.++.
T Consensus 78 ~~VLDlG~GtG~~t~~la~~v~~~G---~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~ 154 (232)
T 3id6_C 78 TKVLYLGAASGTTISHVSDIIELNG---KAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDI 154 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHHHTTTS---EEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECC
T ss_pred CEEEEEeecCCHHHHHHHHHhCCCC---EEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecC
Confidence 57999999999999887642 11 23333322 211 122222 2333344433321 11245788887663
Q ss_pred cccccccCCCChhhhhh-hhcccccCCceEEEe----------cchhHHHHHHHHHhhcCccceecccccccccCCCCCc
Q 008748 470 VFSEIEERGCSFEDLLI-EMDRMLRPEGFVIIR----------DKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEE 538 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~-e~drilrp~g~~i~r----------d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 538 (555)
-+ .....+|+ .+.|.|+|||.+++. +..++...+.+.++.-..+.. ..+ .-+|+. .+.
T Consensus 155 a~-------~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~-~~~--~l~p~~-~~h 223 (232)
T 3id6_C 155 AQ-------PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETI-QII--NLDPYD-KDH 223 (232)
T ss_dssp CC-------TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEE-EEE--ECTTTC-SSC
T ss_pred CC-------hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEE-EEe--ccCCCc-Cce
Confidence 32 23455555 456699999999975 111233344444443334431 122 223442 457
Q ss_pred eEEEEEecc
Q 008748 539 RVLIAKKKL 547 (555)
Q Consensus 539 ~~l~~~k~~ 547 (555)
-+++++|++
T Consensus 224 ~~v~~~~~~ 232 (232)
T 3id6_C 224 AIVLSKYKG 232 (232)
T ss_dssp EEEEEEEC-
T ss_pred EEEEEEeCC
Confidence 788888863
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.003 Score=60.74 Aligned_cols=112 Identities=15% Similarity=0.137 Sum_probs=62.4
Q ss_pred eeEeeccCCcchhhhhccCC--CceEEEecccCCC-C----chhHHhhc-cccchhcccccC--CCCCCCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS-A----RLKIIYDR-GLIGTVHDWCES--FSTYPRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~~-~----~l~~i~~r-gl~g~~~~~ce~--~~typrtydl~h~~~~ 470 (555)
..|+|++||.|+|+..|.+. |-. .|+-++-. . .+...-.+ ++--+..|..+. ++..+.+||+|.++..
T Consensus 79 ~~vLDlG~G~G~~~~~la~~~g~~~--~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~ 156 (233)
T 2ipx_A 79 AKVLYLGAASGTTVSHVSDIVGPDG--LVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVA 156 (233)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTC--EEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCC
T ss_pred CEEEEEcccCCHHHHHHHHHhCCCc--EEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCC
Confidence 47999999999999988653 211 23333332 1 12222221 222223344331 2223468999987543
Q ss_pred ccccccCCCCh-hhhhhhhcccccCCceEEEecchh----------HHHHHHHHHhhcCccc
Q 008748 471 FSEIEERGCSF-EDLLIEMDRMLRPEGFVIIRDKSS----------IINYIRKFITALKWDG 521 (555)
Q Consensus 471 ~s~~~~~~c~~-~~~~~e~drilrp~g~~i~rd~~~----------~~~~~~~~~~~~~w~~ 521 (555)
. ... ..++.++-|+|+|||.+++.-... ++.+-.+++....|+.
T Consensus 157 -~------~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 211 (233)
T 2ipx_A 157 -Q------PDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKP 211 (233)
T ss_dssp -C------TTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEE
T ss_pred -C------ccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCce
Confidence 1 112 345677999999999999853321 1222245566666765
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0028 Score=61.22 Aligned_cols=131 Identities=11% Similarity=0.053 Sum_probs=75.7
Q ss_pred eEeeccCCcchhhhhccCC--CceEEEecccCCC-CchhH----Hhhcccc-c---h-hcccccCCCCC-CCccchhhcc
Q 008748 402 NVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS-ARLKI----IYDRGLI-G---T-VHDWCESFSTY-PRTYDLLHAW 468 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~~-~~l~~----i~~rgl~-g---~-~~~~ce~~~ty-prtydl~h~~ 468 (555)
+|+|++||.|.++.+|... +- -.|+-++.. ..+.+ +-..|+- . + ..|-.+.++.. +.+||+|-.+
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADN--TTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTT--SEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CEEEEcCCchHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 8999999999988877541 11 134444432 23322 2222432 1 1 11222323333 4789999765
Q ss_pred ccccccccCCCChhhhhhhhcccccCCceEEEecch------------hHHHHHHHHHhhcCccceecccccccccCCCC
Q 008748 469 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS------------SIINYIRKFITALKWDGWLSEVEPRIDALSSS 536 (555)
Q Consensus 469 ~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~------------~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 536 (555)
.-.. ....++-++-|+|||||.+++.|-. .....++++...++++-++... -=| -
T Consensus 137 ~~~~-------~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~lp---~ 203 (221)
T 3dr5_A 137 VSPM-------DLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVA---RLP---L 203 (221)
T ss_dssp CCTT-------THHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEE---EES---S
T ss_pred CcHH-------HHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEE---Eee---c
Confidence 4222 3556788889999999999985432 2234567777777776422111 112 2
Q ss_pred CceEEEEEecc
Q 008748 537 EERVLIAKKKL 547 (555)
Q Consensus 537 ~~~~l~~~k~~ 547 (555)
.+.+++++|.+
T Consensus 204 gdGl~~~~~~~ 214 (221)
T 3dr5_A 204 GAGLTVVTKAL 214 (221)
T ss_dssp TTCEEEEEECC
T ss_pred cchHHHHHHHH
Confidence 56799999976
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.00063 Score=65.68 Aligned_cols=93 Identities=17% Similarity=0.241 Sum_probs=60.0
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHH----hhccc---cchh-cccccCCCCCCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKII----YDRGL---IGTV-HDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i----~~rgl---~g~~-~~~ce~~~typrtydl~h~~~~~ 471 (555)
..|+|++||.|+++.+|...- ..|+-++-. ..+... -..|+ +-++ .|..+. + -+.+||+|.++..|
T Consensus 80 ~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 80 DVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLL-A-SFLKADVVFLSPPW 154 (241)
T ss_dssp SEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH-G-GGCCCSEEEECCCC
T ss_pred CEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHh-c-ccCCCCEEEECCCc
Confidence 479999999999999997653 355555543 333332 22233 2122 233322 2 24699999999888
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
..... ....+.|+-|+|+|||.+|+..
T Consensus 155 ~~~~~----~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 155 GGPDY----ATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp SSGGG----GGSSSBCTTTSCSSCHHHHHHH
T ss_pred CCcch----hhhHHHHHHhhcCCcceeHHHH
Confidence 74321 2336779999999999987764
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.035 Score=54.56 Aligned_cols=99 Identities=15% Similarity=0.151 Sum_probs=61.3
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC-CCeEEEEe-CCCCCCCCCCCccEEEecccc-
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVL-GTKRLPYPSRSFELAHCSRCR- 229 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~-d~~~Lp~~d~sFDlVv~s~~~- 229 (555)
.+|||+||++|.++.+.+.. .|.++|+-+....+.+. ....| ..+.|..+ |...++- ..+|.|+|--.-
T Consensus 80 ~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~--~~s~gwn~v~fk~gvDv~~~~~--~~~DtllcDIgeS 155 (267)
T 3p8z_A 80 GRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVP--MSTYGWNIVKLMSGKDVFYLPP--EKCDTLLCDIGES 155 (267)
T ss_dssp EEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC--CCCTTTTSEEEECSCCGGGCCC--CCCSEEEECCCCC
T ss_pred CEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcch--hhhcCcCceEEEeccceeecCC--ccccEEEEecCCC
Confidence 48999999999999987753 68888887755421110 01122 24677777 7655543 569999985421
Q ss_pred --cccccch--HHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 230 --IDWLQRD--GILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 230 --l~~~~d~--~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
...++.. -.+|.-+.+.|++ |-|++-+-..
T Consensus 156 s~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~p 189 (267)
T 3p8z_A 156 SPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNP 189 (267)
T ss_dssp CSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCC
T ss_pred CCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccC
Confidence 1111111 1156666788998 7888755443
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0028 Score=63.26 Aligned_cols=111 Identities=9% Similarity=0.043 Sum_probs=57.0
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccC--CC-CchhH-Hhhccccch--hcccccCCCCCCCccchhhccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVR--MS-ARLKI-IYDRGLIGT--VHDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~--~~-~~l~~-i~~rgl~g~--~~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
..|+|++||.|+|+..|... .|.-+-+-|.. +. +.+.. .+.-++.-+ -.|-. .++ +.+||+|-++..+..
T Consensus 76 ~~VLDlGcGtG~~s~~la~~~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~-~l~--~~~fD~V~sd~~~~~ 152 (265)
T 2oxt_A 76 GRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIH-TLP--VERTDVIMCDVGESS 152 (265)
T ss_dssp EEEEEESCTTSHHHHHHHTSTTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTT-TSC--CCCCSEEEECCCCCC
T ss_pred CEEEEeCcCCCHHHHHHHHcCcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHh-HCC--CCCCcEEEEeCcccC
Confidence 57999999999998877664 34433333420 00 00000 000011111 11222 233 579999988754220
Q ss_pred -cc-cCCCChhhhhhhhcccccCCc--eEEEe----cchhHHHHHHHHH
Q 008748 474 -IE-ERGCSFEDLLIEMDRMLRPEG--FVIIR----DKSSIINYIRKFI 514 (555)
Q Consensus 474 -~~-~~~c~~~~~~~e~drilrp~g--~~i~r----d~~~~~~~~~~~~ 514 (555)
.. .+.-....+|-++.|+|+||| .+++. +..++++.++.+.
T Consensus 153 ~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~ 201 (265)
T 2oxt_A 153 PKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQ 201 (265)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHH
Confidence 00 000000126788999999999 89885 3443334444433
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0026 Score=60.09 Aligned_cols=99 Identities=8% Similarity=0.137 Sum_probs=60.4
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----ccc----cchh-cccccCCCCC-CCc-cchhhcc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGL----IGTV-HDWCESFSTY-PRT-YDLLHAW 468 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl----~g~~-~~~ce~~~ty-prt-ydl~h~~ 468 (555)
..|+|++||.|+|+..+..... -.|+-++.. ..+...-+ .|+ +-++ .|..+..... +.+ ||+|-++
T Consensus 55 ~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 55 SECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 3699999999999886543322 245666644 44443322 233 1112 2333322222 468 9999888
Q ss_pred ccccccccCCCChhhhhhhh--cccccCCceEEEecchhH
Q 008748 469 KVFSEIEERGCSFEDLLIEM--DRMLRPEGFVIIRDKSSI 506 (555)
Q Consensus 469 ~~~s~~~~~~c~~~~~~~e~--drilrp~g~~i~rd~~~~ 506 (555)
..|. . -....++-++ -|+|+|||.+++......
T Consensus 133 ~~~~-~----~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 133 PPFH-F----NLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp CCSS-S----CHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred CCCC-C----ccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 7764 1 1255677777 789999999999765544
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0026 Score=61.57 Aligned_cols=92 Identities=13% Similarity=0.254 Sum_probs=54.7
Q ss_pred eeEeeccCCcchhhhhccCC-C-ceEEEecccCCC-CchhHHhh----ccccc---h-hcc----------------ccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRMS-ARLKIIYD----RGLIG---T-VHD----------------WCE 453 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~-~wvmnv~p~~~~-~~l~~i~~----rgl~g---~-~~~----------------~ce 453 (555)
.+|+|++||.|.++..|... + . -+|+-++.. ..+...-+ .|+-. + ..| |-+
T Consensus 62 ~~VLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 139 (239)
T 2hnk_A 62 KRIIEIGTFTGYSSLCFASALPED--GKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS 139 (239)
T ss_dssp SEEEEECCTTCHHHHHHHHHSCTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred CEEEEEeCCCCHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence 47999999999999888642 1 1 134444432 33332222 23311 1 111 222
Q ss_pred CCCCCC-CccchhhccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 454 SFSTYP-RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 454 ~~~typ-rtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
.|++ + .+||+|..+.... ....++-++-|+|||||.+++.+
T Consensus 140 ~f~~-~~~~fD~I~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 140 DFAF-GPSSIDLFFLDADKE-------NYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp TTCC-STTCEEEEEECSCGG-------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cccC-CCCCcCEEEEeCCHH-------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 2222 2 6899998664322 24577889999999999999976
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0033 Score=60.76 Aligned_cols=94 Identities=13% Similarity=0.117 Sum_probs=55.8
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHh----hccccc---h-hcccccCCCCCC-----Cccchh
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIY----DRGLIG---T-VHDWCESFSTYP-----RTYDLL 465 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~----~rgl~g---~-~~~~ce~~~typ-----rtydl~ 465 (555)
++|+|++||.|.++.+|... +- --.|+-++.. ..+.+.- ..|+-. + ..|..+.++..| .+||+|
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V 152 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPP-DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI 152 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCT-TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence 58999999999998888653 10 0134444432 3333322 224421 1 122222222222 689999
Q ss_pred hccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 466 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 466 h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
..+.... ....++-++-|+|||||.+++.|
T Consensus 153 ~~d~~~~-------~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 153 FIDADKR-------NYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp EECSCGG-------GHHHHHHHHHHTEEEEEEEEEEC
T ss_pred EECCCHH-------HHHHHHHHHHHHcCCCeEEEEeC
Confidence 7665321 35677888899999999999964
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0064 Score=61.60 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=76.9
Q ss_pred cceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhc------cc----cc-hhcccccCCCC-CCCccch
Q 008748 399 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR------GL----IG-TVHDWCESFST-YPRTYDL 464 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~r------gl----~g-~~~~~ce~~~t-yprtydl 464 (555)
.-++|+|++||.|+++..|.+. ++- .|+=++-. .-+.+.-++ ++ +- +..|..+-... -+.+||+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~--~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVE--HCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCC--EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCC--EEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 3478999999999999999865 332 33333322 222222111 11 11 11222221111 2578999
Q ss_pred hhccccccccccCCCChhhhhhhhcccccCCceEEEecc-----hhHHHHHHHHHhhcCccc-eeccccccccc-CCCCC
Q 008748 465 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK-----SSIINYIRKFITALKWDG-WLSEVEPRIDA-LSSSE 537 (555)
Q Consensus 465 ~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~-----~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~-~~~~~ 537 (555)
|-++..........---..++-++-|+|+|||.+++... ......+.+.++...+.. .+... .-| +..+.
T Consensus 173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~---~vP~yp~g~ 249 (304)
T 3bwc_A 173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALM---HVPTYPCGS 249 (304)
T ss_dssp EEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEEC---CCTTSTTSC
T ss_pred EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEe---ecccccCcc
Confidence 998654321000101115778899999999999999632 245666777777665543 21111 111 11345
Q ss_pred ceEEEEEec
Q 008748 538 ERVLIAKKK 546 (555)
Q Consensus 538 ~~~l~~~k~ 546 (555)
-.+++|.|+
T Consensus 250 w~f~~as~~ 258 (304)
T 3bwc_A 250 IGTLVCSKK 258 (304)
T ss_dssp CEEEEEESS
T ss_pred eEEEEEeCC
Confidence 678899986
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0031 Score=65.41 Aligned_cols=98 Identities=16% Similarity=0.174 Sum_probs=61.1
Q ss_pred CCcceeEeeccCCcchhhhhccCC-CceEEEecccCCCCchhHHhh-ccccchhcccccCCCCCCCccchhhcccccccc
Q 008748 397 KNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYD-RGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEI 474 (555)
Q Consensus 397 ~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~~~l~~i~~-rgl~g~~~~~ce~~~typrtydl~h~~~~~s~~ 474 (555)
......|+|++||.|.++.+|.+. |-. .++-++-+..+...-+ .++--+-+|..++ .|. ||++.+.+++-.+
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~--~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---~~~-~D~v~~~~~lh~~ 280 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLI--KGINFDLPQVIENAPPLSGIEHVGGDMFAS---VPQ-GDAMILKAVCHNW 280 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTC--EEEEEECHHHHTTCCCCTTEEEEECCTTTC---CCC-EEEEEEESSGGGS
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCC--eEEEeChHHHHHhhhhcCCCEEEeCCcccC---CCC-CCEEEEecccccC
Confidence 345679999999999999998643 211 1222221111111111 1232334455553 455 9999999888744
Q ss_pred ccCCCChhhhhhhhcccccCCceEEEec
Q 008748 475 EERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 475 ~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
... ....+|-++-|+|+|||.++|-|
T Consensus 281 ~d~--~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 281 SDE--KCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp CHH--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHH--HHHHHHHHHHHhcCCCCEEEEEE
Confidence 322 13489999999999999999874
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0048 Score=59.43 Aligned_cols=114 Identities=10% Similarity=0.105 Sum_probs=66.4
Q ss_pred ceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhH----Hhhccccc---hhcccccCCC--CCCCccchhhcc
Q 008748 400 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKI----IYDRGLIG---TVHDWCESFS--TYPRTYDLLHAW 468 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~----i~~rgl~g---~~~~~ce~~~--typrtydl~h~~ 468 (555)
-..|+|++||.|.++.+|... |- .+|+-++-. .-+.. +-+.|+-. +-.|-.+-++ .-+.+||+|+..
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~--~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPE--QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCeEEEEeeeChHHHHHHHHHCCC--CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 357999999999999988632 21 245555543 33333 33345422 1223222211 125799999865
Q ss_pred ccccccc-----cCCCChhhhhhhhcccccCCceEEEe-cchhHHHHHHHHHhh
Q 008748 469 KVFSEIE-----ERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITA 516 (555)
Q Consensus 469 ~~~s~~~-----~~~c~~~~~~~e~drilrp~g~~i~r-d~~~~~~~~~~~~~~ 516 (555)
.... +. +++---..++-++-|+|+|||.+++. |.....+.+.+++..
T Consensus 113 ~~~p-~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~ 165 (218)
T 3dxy_A 113 FPDP-WHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSS 165 (218)
T ss_dssp SCCC-CCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred CCCC-ccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 2211 11 11122235889999999999999986 555556666666654
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0023 Score=61.06 Aligned_cols=89 Identities=16% Similarity=0.128 Sum_probs=53.3
Q ss_pred eeEeeccCCcchhhhhccCC--CceEEEecccCCC-CchhHHhhc----c--------ccchhcccccCCCCCCCccchh
Q 008748 401 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS-ARLKIIYDR----G--------LIGTVHDWCESFSTYPRTYDLL 465 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~~-~~l~~i~~r----g--------l~g~~~~~ce~~~typrtydl~ 465 (555)
.+|+|++||.|++++.|... +- -+|+-++-. ..+...-++ | +--+..|..+.+. -+.+||+|
T Consensus 79 ~~vLDiG~G~G~~~~~la~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~i 155 (226)
T 1i1n_A 79 AKALDVGSGSGILTACFARMVGCT--GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA-EEAPYDAI 155 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTT--CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG-GGCCEEEE
T ss_pred CEEEEEcCCcCHHHHHHHHHhCCC--cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc-cCCCcCEE
Confidence 48999999999999888642 11 134444432 333332211 2 1112234433321 24589999
Q ss_pred hccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 466 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 466 h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+++..+. .++-++-|+|+|||.+++--
T Consensus 156 ~~~~~~~----------~~~~~~~~~LkpgG~lv~~~ 182 (226)
T 1i1n_A 156 HVGAAAP----------VVPQALIDQLKPGGRLILPV 182 (226)
T ss_dssp EECSBBS----------SCCHHHHHTEEEEEEEEEEE
T ss_pred EECCchH----------HHHHHHHHhcCCCcEEEEEE
Confidence 9776553 34567889999999999853
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.01 Score=57.05 Aligned_cols=104 Identities=12% Similarity=0.010 Sum_probs=66.7
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cc---c-chhcccccCCCCCCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GL---I-GTVHDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl---~-g~~~~~ce~~~typrtydl~h~~~~~ 471 (555)
.+|+|++||.|.++.+|... ..+|+-++-. ..+...-++ |+ + -+..|..+.+. -+.+||++-++-
T Consensus 93 ~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~-- 166 (248)
T 2yvl_A 93 KRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV-PEGIFHAAFVDV-- 166 (248)
T ss_dssp CEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC-CTTCBSEEEECS--
T ss_pred CEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc-CCCcccEEEECC--
Confidence 47999999999999888765 2356666643 455544433 43 1 12234444330 135799886421
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEecc-hhHHHHHHHHHhhc
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITAL 517 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~-~~~~~~~~~~~~~~ 517 (555)
-+...++-++-|+|+|||.+++-.. .+-+.++...+...
T Consensus 167 -------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~ 206 (248)
T 2yvl_A 167 -------REPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY 206 (248)
T ss_dssp -------SCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT
T ss_pred -------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh
Confidence 1356788899999999999998765 45566666665543
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.012 Score=57.07 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=70.4
Q ss_pred ceeEeeccCCcchhhhhccCC--CceEEEecccCCC-CchhHHhhc----cccc----hhcccccCCCCCCCccchhhcc
Q 008748 400 FRNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS-ARLKIIYDR----GLIG----TVHDWCESFSTYPRTYDLLHAW 468 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~~-~~l~~i~~r----gl~g----~~~~~ce~~~typrtydl~h~~ 468 (555)
=.+|+|++||.|+++.+|... |- ..|+-++-. ..+...-++ |+-. +..|..+.|+. .+||+|-++
T Consensus 94 ~~~vldiG~G~G~~~~~l~~~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~v~~~ 169 (255)
T 3mb5_A 94 GDFIVEAGVGSGALTLFLANIVGPE--GRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE--ENVDHVILD 169 (255)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC--CSEEEEEEC
T ss_pred CCEEEEecCCchHHHHHHHHHhCCC--eEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC--CCcCEEEEC
Confidence 357999999999999988653 11 134444543 444443333 5432 34566666543 579998642
Q ss_pred ccccccccCCCChhhhhhhhcccccCCceEEEec-chhHHHHHHHHHhhcC
Q 008748 469 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALK 518 (555)
Q Consensus 469 ~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd-~~~~~~~~~~~~~~~~ 518 (555)
- -....++-++-|+|+|||.+++-. ..+-+.++.+.++...
T Consensus 170 ~---------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 170 L---------PQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFK 211 (255)
T ss_dssp S---------SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTG
T ss_pred C---------CCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 1 234678999999999999999864 4566777777777665
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0084 Score=59.98 Aligned_cols=140 Identities=16% Similarity=0.076 Sum_probs=75.4
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc-----cc-----------cchh-cccccCCCCCCCc
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR-----GL-----------IGTV-HDWCESFSTYPRT 461 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r-----gl-----------~g~~-~~~ce~~~typrt 461 (555)
-++|+|++||.|+++..|...+. .+|+=++-. .-+.+.-++ |+ +-+. .|-.+-... +.+
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 36899999999999999987643 244444432 222222111 22 1111 121111122 578
Q ss_pred cchhhcccccccccc-CCCChhhhhhhhcccccCCceEEEec-----chhHHHHHHHHHhhcCccceecccccccccCCC
Q 008748 462 YDLLHAWKVFSEIEE-RGCSFEDLLIEMDRMLRPEGFVIIRD-----KSSIINYIRKFITALKWDGWLSEVEPRIDALSS 535 (555)
Q Consensus 462 ydl~h~~~~~s~~~~-~~c~~~~~~~e~drilrp~g~~i~rd-----~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 535 (555)
||+|-++.... ... ..--...++-++-|+|+|||.+++.- ..+.+..+.+.++..--.+..... .-|.-.
T Consensus 153 fD~Ii~d~~~~-~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~---~vP~~~ 228 (281)
T 1mjf_A 153 FDVIIADSTDP-VGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSF---PVIGYA 228 (281)
T ss_dssp EEEEEEECCCC-C-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEE---CCTTSS
T ss_pred eeEEEECCCCC-CCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEE---ecCCCC
Confidence 99998765321 111 00012567889999999999999862 334455555555544323321111 111112
Q ss_pred CCceEEEEEec
Q 008748 536 SEERVLIAKKK 546 (555)
Q Consensus 536 ~~~~~l~~~k~ 546 (555)
+...+++|.|+
T Consensus 229 g~~~~~~as~~ 239 (281)
T 1mjf_A 229 SPWAFLVGVKG 239 (281)
T ss_dssp SSEEEEEEEES
T ss_pred ceEEEEEeeCC
Confidence 45778999986
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0053 Score=56.79 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=28.3
Q ss_pred Cccchhhcccccccccc----C---CCChhhhhhhhcccccCCceEEEec
Q 008748 460 RTYDLLHAWKVFSEIEE----R---GCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 460 rtydl~h~~~~~s~~~~----~---~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
.+||+|-++..+..... . ......++-|+-|+|||||.+++.+
T Consensus 96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (196)
T 2nyu_A 96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT 145 (196)
T ss_dssp GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 58999987654331000 0 0001467889999999999999973
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0043 Score=60.78 Aligned_cols=89 Identities=18% Similarity=0.185 Sum_probs=55.5
Q ss_pred ceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhccc-c-chhcccccCCCCCCCccchhhccccccccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDRGL-I-GTVHDWCESFSTYPRTYDLLHAWKVFSEIE 475 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~rgl-~-g~~~~~ce~~~typrtydl~h~~~~~s~~~ 475 (555)
-.+|+|++||.|.++..|... +-. +|+-++-. ..+...-+++- + =+..|. +.++.-+.+||+|.+.+.
T Consensus 86 ~~~vLdiG~G~G~~~~~l~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~----- 157 (269)
T 1p91_A 86 ATAVLDIGCGEGYYTHAFADALPEI--TTFGLDVSKVAIKAAAKRYPQVTFCVASS-HRLPFSDTSMDAIIRIYA----- 157 (269)
T ss_dssp CCEEEEETCTTSTTHHHHHHTCTTS--EEEEEESCHHHHHHHHHHCTTSEEEECCT-TSCSBCTTCEEEEEEESC-----
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCC--eEEEEeCCHHHHHHHHHhCCCcEEEEcch-hhCCCCCCceeEEEEeCC-----
Confidence 347999999999999888754 221 34444433 44555544441 1 011122 223322368999986432
Q ss_pred cCCCChhhhhhhhcccccCCceEEEec
Q 008748 476 ERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 476 ~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
...+-|+-|+|||||.+++-+
T Consensus 158 ------~~~l~~~~~~L~pgG~l~~~~ 178 (269)
T 1p91_A 158 ------PCKAEELARVVKPGGWVITAT 178 (269)
T ss_dssp ------CCCHHHHHHHEEEEEEEEEEE
T ss_pred ------hhhHHHHHHhcCCCcEEEEEE
Confidence 235789999999999999864
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.004 Score=79.69 Aligned_cols=98 Identities=16% Similarity=0.240 Sum_probs=43.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC---------CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC-CCCCCCccEEEe
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---------DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PYPSRSFELAHC 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---------~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L-p~~d~sFDlVv~ 225 (555)
..+||+||.|+|..+..+.+. .++..|+++.....++.++.. ..+.....|.... ++...+||+|++
T Consensus 1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~---~di~~~~~d~~~~~~~~~~~ydlvia 1317 (2512)
T 2vz8_A 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQ---LHVTQGQWDPANPAPGSLGKADLLVC 1317 (2512)
T ss_dssp EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHH---HTEEEECCCSSCCCC-----CCEEEE
T ss_pred CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhh---cccccccccccccccCCCCceeEEEE
Confidence 358999999999765543321 345566666544444333321 1222222343332 345567999998
Q ss_pred cccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 226 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 226 s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
++ ++|-..+....|.++.++|||||++++..
T Consensus 1318 ~~-vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1318 NC-ALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp EC-C--------------------CCEEEEEE
T ss_pred cc-cccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence 87 68877888889999999999999998865
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.009 Score=62.04 Aligned_cols=98 Identities=15% Similarity=0.172 Sum_probs=60.3
Q ss_pred CCcceeEeeccCCcchhhhhccCC-CceEEEecccCCCCchhHHhhc-cccchhcccccCCCCCCCccchhhcccccccc
Q 008748 397 KNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYDR-GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEI 474 (555)
Q Consensus 397 ~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~~~l~~i~~r-gl~g~~~~~ce~~~typrtydl~h~~~~~s~~ 474 (555)
....+.|+|++||.|.++.+|.+. |-. .++-.+-+..+...-++ ++-=+-+|.-++ +|.. |++.+.+++-.+
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~---~p~~-D~v~~~~vlh~~ 274 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSI--NAINFDLPHVIQDAPAFSGVEHLGGDMFDG---VPKG-DAIFIKWICHDW 274 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTC--EEEEEECHHHHTTCCCCTTEEEEECCTTTC---CCCC-SEEEEESCGGGB
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCC--EEEEEehHHHHHhhhhcCCCEEEecCCCCC---CCCC-CEEEEechhhcC
Confidence 456789999999999999999642 321 11112211111111111 222233455444 4544 999988888644
Q ss_pred ccCCCChhhhhhhhcccccCCceEEEec
Q 008748 475 EERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 475 ~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
... ....+|-++=|.|+|||.++|-|
T Consensus 275 ~~~--~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 275 SDE--HCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp CHH--HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CHH--HHHHHHHHHHHHcCCCCEEEEEE
Confidence 322 24578999999999999999865
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0066 Score=60.96 Aligned_cols=130 Identities=13% Similarity=0.193 Sum_probs=81.9
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----ccc---cc-hhcccccCCCCCCCcc---chhhcc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGL---IG-TVHDWCESFSTYPRTY---DLLHAW 468 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl---~g-~~~~~ce~~~typrty---dl~h~~ 468 (555)
.+|+|++||.|.++.+|...|-+ +|+-++-. .-|.+.-+ .|+ +- +..||.+.+ +.+| |+|-++
T Consensus 125 ~~vLDlG~GsG~~~~~la~~~~~--~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~---~~~f~~~D~Ivsn 199 (284)
T 1nv8_A 125 KTVADIGTGSGAIGVSVAKFSDA--IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF---KEKFASIEMILSN 199 (284)
T ss_dssp CEEEEESCTTSHHHHHHHHHSSC--EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG---GGGTTTCCEEEEC
T ss_pred CEEEEEeCchhHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc---ccccCCCCEEEEc
Confidence 36999999999999998754433 45555543 44444322 354 22 234666644 3578 999876
Q ss_pred cccccccc---------------CCCChhhhhhhhc-ccccCCceEEEecchhHHHHHHHHHhhcCccceeccccccccc
Q 008748 469 KVFSEIEE---------------RGCSFEDLLIEMD-RMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDA 532 (555)
Q Consensus 469 ~~~s~~~~---------------~~c~~~~~~~e~d-rilrp~g~~i~rd~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 532 (555)
--+..... ..++-..++-++= +.|+|||++++--..+--+.|++++... ++. .+
T Consensus 200 PPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~--~~~-~D------- 269 (284)
T 1nv8_A 200 PPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT--VFL-KD------- 269 (284)
T ss_dssp CCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC--EEE-EC-------
T ss_pred CCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC--Cee-cc-------
Confidence 22221000 1123337788888 9999999999976666677787777765 331 11
Q ss_pred CCCCCceEEEEEec
Q 008748 533 LSSSEERVLIAKKK 546 (555)
Q Consensus 533 ~~~~~~~~l~~~k~ 546 (555)
+ .+.++++++.++
T Consensus 270 ~-~g~~R~~~~~~k 282 (284)
T 1nv8_A 270 S-AGKYRFLLLNRR 282 (284)
T ss_dssp T-TSSEEEEEEECC
T ss_pred c-CCCceEEEEEEc
Confidence 2 367899988875
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0061 Score=58.06 Aligned_cols=94 Identities=14% Similarity=0.064 Sum_probs=56.3
Q ss_pred ceeEeeccCCcchhhhhccCC-C-ceEEEecccCC-CCchhHHh----hcccc---chh-cccccCCCCCC-----Cccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRM-SARLKIIY----DRGLI---GTV-HDWCESFSTYP-----RTYD 463 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~-~-~wvmnv~p~~~-~~~l~~i~----~rgl~---g~~-~~~ce~~~typ-----rtyd 463 (555)
-.+|+|++||.|.++.+|... + - -+|+-++. +..+.+.- +.|+- -+. .|..+.++..+ .+||
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPAD--GRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTT--CEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 358999999999999888653 1 1 13444443 23333322 22441 111 12222222222 6899
Q ss_pred hhhccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 464 LLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 464 l~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+|..+.- .-....++-++-|+|||||.+++.|
T Consensus 148 ~v~~d~~-------~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 148 VAVVDAD-------KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EEEECSC-------STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCC-------HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 9886543 2235678888999999999999954
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0046 Score=63.58 Aligned_cols=99 Identities=17% Similarity=0.169 Sum_probs=60.4
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHh----hccccchhcccccCCCCCCCccchhhcccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIY----DRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEI 474 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~----~rgl~g~~~~~ce~~~typrtydl~h~~~~~s~~ 474 (555)
.+|+|++||.|.++.+|... |-+ +|+-++.. .-+...- ..|+-..+ -+...++.-+.+||+|-++..|...
T Consensus 198 ~~VLDlGcG~G~~~~~la~~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~-~~~d~~~~~~~~fD~Iv~~~~~~~g 274 (343)
T 2pjd_A 198 GKVLDVGCGAGVLSVAFARHSPKI--RLTLCDVSAPAVEASRATLAANGVEGEV-FASNVFSEVKGRFDMIISNPPFHDG 274 (343)
T ss_dssp SBCCBTTCTTSHHHHHHHHHCTTC--BCEEEESBHHHHHHHHHHHHHTTCCCEE-EECSTTTTCCSCEEEEEECCCCCSS
T ss_pred CeEEEecCccCHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHhCCCCEE-EEccccccccCCeeEEEECCCcccC
Confidence 37999999999999888643 221 34444432 2233222 23432211 1223333336799999998887621
Q ss_pred c-cCCCChhhhhhhhcccccCCceEEEec
Q 008748 475 E-ERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 475 ~-~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
. ...-....++-|+-|+|+|||.+++-.
T Consensus 275 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 303 (343)
T 2pjd_A 275 MQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (343)
T ss_dssp SHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 0 011135688999999999999999864
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0081 Score=60.29 Aligned_cols=94 Identities=13% Similarity=0.078 Sum_probs=51.2
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccC-----CC---Cch--hHHhhccccchhcccccCCCCCCCccchhhccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVR-----MS---ARL--KIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~-----~~---~~l--~~i~~rgl~g~~~~~ce~~~typrtydl~h~~~ 469 (555)
..|+|++||.|+|+..|... .|.-+-+-|.. .+ ..+ ++.+-.+ -.|- +.++ +.+||+|-++.
T Consensus 84 ~~VLDlGcGtG~~s~~la~~~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~----~~D~-~~l~--~~~fD~Vvsd~ 156 (276)
T 2wa2_A 84 GTVVDLGCGRGSWSYYAASQPNVREVKAYTLGTSGHEKPRLVETFGWNLITFKS----KVDV-TKME--PFQADTVLCDI 156 (276)
T ss_dssp EEEEEESCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEEC----SCCG-GGCC--CCCCSEEEECC
T ss_pred CEEEEeccCCCHHHHHHHHcCCEEEEECchhhhhhhhchhhhhhcCCCeEEEec----cCcH-hhCC--CCCcCEEEECC
Confidence 57999999999998887665 33333333320 00 000 1111100 1122 2244 57899998765
Q ss_pred cccccc--cCCCChhhhhhhhcccccCCc--eEEEe
Q 008748 470 VFSEIE--ERGCSFEDLLIEMDRMLRPEG--FVIIR 501 (555)
Q Consensus 470 ~~s~~~--~~~c~~~~~~~e~drilrp~g--~~i~r 501 (555)
.+.... .+.-....+|-++.|+|+||| .+++.
T Consensus 157 ~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~ 192 (276)
T 2wa2_A 157 GESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVK 192 (276)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred CcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 422100 000000126788999999999 88875
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0033 Score=57.56 Aligned_cols=96 Identities=17% Similarity=0.215 Sum_probs=57.9
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhH----Hhhccc---cch-hcccccCCCCC---CCccchhhcc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRGL---IGT-VHDWCESFSTY---PRTYDLLHAW 468 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~----i~~rgl---~g~-~~~~ce~~~ty---prtydl~h~~ 468 (555)
.+|+|++||.|.++.++...+. -+|+-++-. ..+.. +-..|+ +-+ ..|+.+..+.. +.+||+|-++
T Consensus 46 ~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~ 123 (187)
T 2fhp_A 46 GMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD 123 (187)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEEC
Confidence 4899999999999887765542 234445432 33332 222233 212 22444422211 4689999988
Q ss_pred ccccccccCCCChhhhhhhh--cccccCCceEEEecc
Q 008748 469 KVFSEIEERGCSFEDLLIEM--DRMLRPEGFVIIRDK 503 (555)
Q Consensus 469 ~~~s~~~~~~c~~~~~~~e~--drilrp~g~~i~rd~ 503 (555)
..|.. -....++-++ -|+|+|||.+++...
T Consensus 124 ~~~~~-----~~~~~~~~~l~~~~~L~~gG~l~~~~~ 155 (187)
T 2fhp_A 124 PPYAK-----QEIVSQLEKMLERQLLTNEAVIVCETD 155 (187)
T ss_dssp CCGGG-----CCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCCCc-----hhHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 77651 1245556556 999999999998643
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0042 Score=60.37 Aligned_cols=94 Identities=9% Similarity=0.048 Sum_probs=56.7
Q ss_pred ceeEeeccCCcchhhhhccCC-C-ceEEEecccCCC-CchhHH----hhccccc---h-hcccccCCCCC------CCcc
Q 008748 400 FRNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRMS-ARLKII----YDRGLIG---T-VHDWCESFSTY------PRTY 462 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~-~-~wvmnv~p~~~~-~~l~~i----~~rgl~g---~-~~~~ce~~~ty------prty 462 (555)
-++|+|++||.|+.+.+|... | - -.|+-++-. ..+.+. -..|+-. + ..|..+.++.. +.+|
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDD--GKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 468999999999988877532 1 1 134444432 333332 2335421 1 12333332322 4689
Q ss_pred chhhccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 463 DLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 463 dl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
|+|-.++--. ....++-++-|+|||||.+++.+
T Consensus 149 D~I~~d~~~~-------~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 149 DFGFVDADKP-------NYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEEECSCGG-------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CEEEECCchH-------HHHHHHHHHHHhcCCCeEEEEec
Confidence 9997664211 25677888889999999999875
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0083 Score=61.74 Aligned_cols=118 Identities=14% Similarity=0.078 Sum_probs=66.0
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----cccc----chhcccccCCCCC----CCccchhhc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGLI----GTVHDWCESFSTY----PRTYDLLHA 467 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl~----g~~~~~ce~~~ty----prtydl~h~ 467 (555)
..|+|++||.|+|+.++..... .|+-+|.. .-|...-+ .|+- -+++.=+..+... ..+||+|=+
T Consensus 155 ~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~ 231 (332)
T 2igt_A 155 LKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 231 (332)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence 4799999999999988876533 56667654 44443222 2331 1222111111111 358999876
Q ss_pred ccc-cccccc-----CCCChhhhhhhhcccccCCceEEEec-------chhHHHHHHHHHhhcCccc
Q 008748 468 WKV-FSEIEE-----RGCSFEDLLIEMDRMLRPEGFVIIRD-------KSSIINYIRKFITALKWDG 521 (555)
Q Consensus 468 ~~~-~s~~~~-----~~c~~~~~~~e~drilrp~g~~i~rd-------~~~~~~~~~~~~~~~~w~~ 521 (555)
+-- |..... ..-.+..++-++-|+|+|||.+++-. ...+.+.+++.+.....++
T Consensus 232 dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v 298 (332)
T 2igt_A 232 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVV 298 (332)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEE
T ss_pred CCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 432 221000 00125678889999999999977642 2234445555555665554
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0064 Score=57.54 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=66.1
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHH--------hhcccc--chhcccccCCCCCCCccchhhcc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKII--------YDRGLI--GTVHDWCESFSTYPRTYDLLHAW 468 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i--------~~rgl~--g~~~~~ce~~~typrtydl~h~~ 468 (555)
..|+|++||.|.++..|... |- -+|+-++-. ..|..+ -.+|+- -..+.=.+.++.-+.+ |.+.
T Consensus 29 ~~vLDiGcG~G~~~~~la~~~p~--~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~-- 103 (218)
T 3mq2_A 29 DVVLDVGTGDGKHPYKVARQNPS--RLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELH-- 103 (218)
T ss_dssp EEEEEESCTTCHHHHHHHHHCTT--EEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEE--
T ss_pred CEEEEecCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEE--
Confidence 56999999999999998753 22 245555543 444432 134432 2222222334433344 6665
Q ss_pred cccc--ccc-cCCCChhhhhhhhcccccCCceEEEecc-------------------hhHHHHHHHHHhhcCccc
Q 008748 469 KVFS--EIE-ERGCSFEDLLIEMDRMLRPEGFVIIRDK-------------------SSIINYIRKFITALKWDG 521 (555)
Q Consensus 469 ~~~s--~~~-~~~c~~~~~~~e~drilrp~g~~i~rd~-------------------~~~~~~~~~~~~~~~w~~ 521 (555)
-+|+ ... .+--+...+|-||-|+|||||.+++... ..+.+.++.++..-.|++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i 178 (218)
T 3mq2_A 104 VLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKL 178 (218)
T ss_dssp EESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEE
T ss_pred EEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCc
Confidence 2222 000 0001126889999999999999998521 122334777777777775
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.01 Score=57.43 Aligned_cols=108 Identities=13% Similarity=0.105 Sum_probs=66.4
Q ss_pred ceeEeeccCCcchhhhhccCC--CceEEEecccCCC-CchhHHhhc-----cc--c-chhcccccC-CCCCCCccchhhc
Q 008748 400 FRNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS-ARLKIIYDR-----GL--I-GTVHDWCES-FSTYPRTYDLLHA 467 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~~-~~l~~i~~r-----gl--~-g~~~~~ce~-~~typrtydl~h~ 467 (555)
-.+|+|++||.|.++.+|... |- -+|+-++.. ..+...-++ |. + -...|..+. |+ +.+||+|-+
T Consensus 97 ~~~vLdiG~G~G~~~~~l~~~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~--~~~~D~v~~ 172 (258)
T 2pwy_A 97 GMRVLEAGTGSGGLTLFLARAVGEK--GLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE--EAAYDGVAL 172 (258)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC--TTCEEEEEE
T ss_pred CCEEEEECCCcCHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC--CCCcCEEEE
Confidence 348999999999999888653 11 134445532 444443333 41 1 122344443 22 258998875
Q ss_pred cccccccccCCCChhhhhhhhcccccCCceEEEecch-hHHHHHHHHHhhcCcc
Q 008748 468 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS-SIINYIRKFITALKWD 520 (555)
Q Consensus 468 ~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~-~~~~~~~~~~~~~~w~ 520 (555)
+ . -....++-++-|+|+|||.+++-... +-+.++.+.+....|.
T Consensus 173 ~-----~----~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~ 217 (258)
T 2pwy_A 173 D-----L----MEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFR 217 (258)
T ss_dssp E-----S----SCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEE
T ss_pred C-----C----cCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 2 1 13457899999999999999986644 3555666666555554
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.016 Score=58.37 Aligned_cols=143 Identities=10% Similarity=0.024 Sum_probs=74.7
Q ss_pred ceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhc------cc----cch-hcccccCCCCCCCccchhh
Q 008748 400 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR------GL----IGT-VHDWCESFSTYPRTYDLLH 466 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~r------gl----~g~-~~~~ce~~~typrtydl~h 466 (555)
-.+|+|++||.|+++.+|... ++. +|+-++-. .-+.+.-++ |+ +-+ ..|..+.....+.+||+|-
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~~--~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSVE--KAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCS--EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCCC--EEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 378999999999999999876 432 34444432 233322211 11 111 1222222223367899998
Q ss_pred ccccccc-ccc-CCCChhhhhhhhcccccCCceEEEec-----chhHHHHHHHHHhhcCccceecccccccccCCCCCce
Q 008748 467 AWKVFSE-IEE-RGCSFEDLLIEMDRMLRPEGFVIIRD-----KSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEER 539 (555)
Q Consensus 467 ~~~~~s~-~~~-~~c~~~~~~~e~drilrp~g~~i~rd-----~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 539 (555)
++. +.. ... ..-....++-++-|+|+|||.+++.- ..+.+..+.+.++..--.+......-.. +..+...
T Consensus 169 ~d~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~--~p~g~~~ 245 (296)
T 1inl_A 169 IDS-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTT--YPSGMWS 245 (296)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTT--STTSEEE
T ss_pred EcC-CCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCc--cCCCceE
Confidence 653 221 100 00012578889999999999999962 2333444444444432233211110001 1124567
Q ss_pred EEEEEecc
Q 008748 540 VLIAKKKL 547 (555)
Q Consensus 540 ~l~~~k~~ 547 (555)
+++|.|++
T Consensus 246 f~~as~~~ 253 (296)
T 1inl_A 246 YTFASKGI 253 (296)
T ss_dssp EEEEESSC
T ss_pred EEEecCCC
Confidence 88999874
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.003 Score=60.32 Aligned_cols=92 Identities=14% Similarity=0.191 Sum_probs=51.9
Q ss_pred eeEeeccCCcchhhhhccCC--C-ceEEEecccCCC-CchhHHh----hc-cccchhcccccC--CCCCCCccchhhccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK--D-VWVMNVAPVRMS-ARLKIIY----DR-GLIGTVHDWCES--FSTYPRTYDLLHAWK 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~--~-~wvmnv~p~~~~-~~l~~i~----~r-gl~g~~~~~ce~--~~typrtydl~h~~~ 469 (555)
.+|+|++||.|.++..|.+. + . .|+-++.. .-+.... ++ ++--+..|..+. +...+.+||+|-++.
T Consensus 75 ~~vLDlG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~ 151 (227)
T 1g8a_A 75 KSVLYLGIASGTTASHVSDIVGWEG---KIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDV 151 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CEEEEEeccCCHHHHHHHHHhCCCe---EEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECC
Confidence 47999999999999888643 1 1 22223322 1111111 11 222222333331 123356899998654
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
... -....++-++-|+|+|||.+++-
T Consensus 152 ~~~------~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 152 AQP------TQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CST------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCH------hHHHHHHHHHHHhcCCCCEEEEE
Confidence 311 11235589999999999999984
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0073 Score=61.49 Aligned_cols=117 Identities=14% Similarity=0.090 Sum_probs=64.3
Q ss_pred eeEeeccCCcchhhhhccCC--CceEEEecccCCC-CchhHHhhc----ccc--chh-cccccCCCCCCCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS-ARLKIIYDR----GLI--GTV-HDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~~-~~l~~i~~r----gl~--g~~-~~~ce~~~typrtydl~h~~~~ 470 (555)
..|+|++||.|+++.+|... +- -.|+-++-. ..+..+-++ |+- -+. .|. +.++.++.+||+|-++--
T Consensus 120 ~~VLDlg~G~G~~t~~la~~~~~~--~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~-~~~~~~~~~fD~Il~d~P 196 (315)
T 1ixk_A 120 EIVADMAAAPGGKTSYLAQLMRND--GVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSS-LHIGELNVEFDKILLDAP 196 (315)
T ss_dssp CEEEECCSSCSHHHHHHHHHTTTC--SEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCG-GGGGGGCCCEEEEEEECC
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECCh-hhcccccccCCEEEEeCC
Confidence 47999999999999888642 11 124445543 444444333 441 122 232 223334668999987532
Q ss_pred ccccc---cC-----CCC----------hhhhhhhhcccccCCceEEEec----chhHHHHHHHHHhhcCcc
Q 008748 471 FSEIE---ER-----GCS----------FEDLLIEMDRMLRPEGFVIIRD----KSSIINYIRKFITALKWD 520 (555)
Q Consensus 471 ~s~~~---~~-----~c~----------~~~~~~e~drilrp~g~~i~rd----~~~~~~~~~~~~~~~~w~ 520 (555)
.|-.. .+ +-. -..+|-++-|+|||||.+++.. ..+--..|+.+++...++
T Consensus 197 csg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~ 268 (315)
T 1ixk_A 197 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVE 268 (315)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred CCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCE
Confidence 22100 00 000 1478889999999999999842 122233455555554444
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=95.10 E-value=0.024 Score=56.57 Aligned_cols=144 Identities=12% Similarity=0.112 Sum_probs=76.3
Q ss_pred cceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhc------cc----cchh-cccccCCCCCCCccchh
Q 008748 399 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR------GL----IGTV-HDWCESFSTYPRTYDLL 465 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~r------gl----~g~~-~~~ce~~~typrtydl~ 465 (555)
.-++|+|++||.|+++..+... ++- .|+=++-. .-+.+.-+. |+ +-++ .|--+-....+.+||+|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~--~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~I 152 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVK--KATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCS--EEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCc--eEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEE
Confidence 4578999999999999998876 432 23333321 222221111 11 1111 12111112235789999
Q ss_pred hcccccccccc-CCCChhhhhhhhcccccCCceEEEec-----chhHHHHHHHHHhhcCccceecccccccccCCCCCce
Q 008748 466 HAWKVFSEIEE-RGCSFEDLLIEMDRMLRPEGFVIIRD-----KSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEER 539 (555)
Q Consensus 466 h~~~~~s~~~~-~~c~~~~~~~e~drilrp~g~~i~rd-----~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 539 (555)
-++.... ... ..--...++-++-|+|+|||.+++.- ..+.+..+.+.++..=-.+......-.. +..+...
T Consensus 153 i~d~~~~-~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~--~~~g~w~ 229 (275)
T 1iy9_A 153 MVDSTEP-VGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPT--YPSGLWT 229 (275)
T ss_dssp EESCSSC-CSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTT--SGGGCEE
T ss_pred EECCCCC-CCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCc--ccCcceE
Confidence 8764332 111 01112578889999999999999973 2344555555555542233211110001 1123567
Q ss_pred EEEEEecc
Q 008748 540 VLIAKKKL 547 (555)
Q Consensus 540 ~l~~~k~~ 547 (555)
+++|.|++
T Consensus 230 ~~~ask~~ 237 (275)
T 1iy9_A 230 FTIGSKKY 237 (275)
T ss_dssp EEEEESSC
T ss_pred EEEeeCCC
Confidence 88999874
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.03 E-value=0.024 Score=57.16 Aligned_cols=94 Identities=20% Similarity=0.243 Sum_probs=57.8
Q ss_pred CeEEEEeCCCC-CC-CCCCCccEEEeccccc---c----------------cccchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 202 PSTLGVLGTKR-LP-YPSRSFELAHCSRCRI---D----------------WLQRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 202 ~v~~~~~d~~~-Lp-~~d~sFDlVv~s~~~l---~----------------~~~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
.+.+.++|... +. +++++||+|+++--.. . |......++.++.|+|||||.+++.....
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~ 100 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDV 100 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCE
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCC
Confidence 45678888544 32 4678999999863211 1 11112347889999999999999877643
Q ss_pred CCC-Chhh----HHHHHHHHHHHHhcCcEEEEEeeceEEeecCC
Q 008748 261 YAH-DPEN----RRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPI 299 (555)
Q Consensus 261 ~~~-~~e~----~~~~~~l~~l~~~~gw~vv~~~~~~~iw~KPl 299 (555)
... .... ......+..++++.||.... ..+|.|+.
T Consensus 101 ~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~----~iiW~K~~ 140 (297)
T 2zig_A 101 AVARRRFGRHLVFPLHADIQVRCRKLGFDNLN----PIIWHKHT 140 (297)
T ss_dssp EEECC----EEEECHHHHHHHHHHHTTCEEEE----EEEEECC-
T ss_pred ccccccCCcccccccHHHHHHHHHHcCCeeec----cEEEeCCC
Confidence 200 0000 01234677788899997653 45899875
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.01 Score=58.13 Aligned_cols=94 Identities=9% Similarity=0.037 Sum_probs=56.6
Q ss_pred ceeEeeccCCcchhhhhccCC-C-ceEEEecccCCC-CchhHH----hhcccc---chh-cccccCCCCC------CCcc
Q 008748 400 FRNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRMS-ARLKII----YDRGLI---GTV-HDWCESFSTY------PRTY 462 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~-~-~wvmnv~p~~~~-~~l~~i----~~rgl~---g~~-~~~ce~~~ty------prty 462 (555)
-++|+|++||.|.++..|... | - -.|+-++.. ..+.+. -..|+- -+. .|..+..+.. +.+|
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~--~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPED--GKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTT--CEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 468999999999998877532 1 1 234444432 333322 223541 111 2333322222 4689
Q ss_pred chhhccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 463 DLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 463 dl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
|+|-.+.-. -....++-++-|+|||||.+++.+
T Consensus 158 D~V~~d~~~-------~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 158 DFIFVDADK-------DNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp SEEEECSCS-------TTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEcCch-------HHHHHHHHHHHHhCCCCeEEEEec
Confidence 999765421 135677888899999999999865
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.0041 Score=58.64 Aligned_cols=90 Identities=16% Similarity=0.099 Sum_probs=54.3
Q ss_pred eeEeeccCCcchhhhhccCC--CceEEEecccCCC-CchhHHhhc----cccc---hhcccccCCCCCCCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS-ARLKIIYDR----GLIG---TVHDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~~-~~l~~i~~r----gl~g---~~~~~ce~~~typrtydl~h~~~~ 470 (555)
.+|+|++||.|.+++.|... |- -+|+-++.. ..+...-++ |+-. ...|..+.+. -+.+||+|.+...
T Consensus 79 ~~vLdiG~G~G~~~~~l~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~ 155 (215)
T 2yxe_A 79 MKVLEIGTGCGYHAAVTAEIVGED--GLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE-PLAPYDRIYTTAA 155 (215)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG-GGCCEEEEEESSB
T ss_pred CEEEEECCCccHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-CCCCeeEEEECCc
Confidence 48999999999999888642 10 134444432 344433332 3211 1223333322 1358999998877
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
+..+. -++-|+|||||.+++--.
T Consensus 156 ~~~~~----------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 156 GPKIP----------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp BSSCC----------HHHHHTEEEEEEEEEEES
T ss_pred hHHHH----------HHHHHHcCCCcEEEEEEC
Confidence 76321 378899999999998643
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.017 Score=57.09 Aligned_cols=109 Identities=13% Similarity=0.100 Sum_probs=68.2
Q ss_pred cceeEeeccCCcchhhhhccCC--CceEEEecccCCC-CchhHHhhc-----cc--c-chhcccccCCCCCCCccchhhc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS-ARLKIIYDR-----GL--I-GTVHDWCESFSTYPRTYDLLHA 467 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~~-~~l~~i~~r-----gl--~-g~~~~~ce~~~typrtydl~h~ 467 (555)
.-.+|+|++||.|+++..|... |.. .|+-++.. ..+..+-++ |+ + -+..|..+.++ +.+||+|-+
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~--~~~fD~Vi~ 185 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALNGKG--TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS--DQMYDAVIA 185 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSS--EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC--SCCEEEEEE
T ss_pred CcCEEEEecCCCCHHHHHHHHHcCCCC--EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCc--CCCccEEEE
Confidence 3458999999999999888653 221 34445542 444443333 42 1 12234444333 358999875
Q ss_pred cccccccccCCCChhhhhhhhcccccCCceEEEecchh-HHHHHHHHHhhcCcc
Q 008748 468 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS-IINYIRKFITALKWD 520 (555)
Q Consensus 468 ~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~-~~~~~~~~~~~~~w~ 520 (555)
+ . -....+|-++-|+|+|||.+++-+... -..++.+.+....|.
T Consensus 186 ~-----~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~ 230 (275)
T 1yb2_A 186 D-----I----PDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMH 230 (275)
T ss_dssp C-----C----SCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEE
T ss_pred c-----C----cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCe
Confidence 2 1 124678999999999999999876543 556666666655554
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.0081 Score=59.75 Aligned_cols=110 Identities=12% Similarity=0.061 Sum_probs=63.1
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHH----hhccccc--hhcccccCCCCCCCccchhhcccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKII----YDRGLIG--TVHDWCESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i----~~rgl~g--~~~~~ce~~~typrtydl~h~~~~~s 472 (555)
.+|+|++||.|+|+..|... + .-.|+-++.. .-+... -..|+-. +++.=.+.++ .+.+||+|-.+...
T Consensus 121 ~~VLDlgcG~G~~s~~la~~~~--~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~-~~~~~D~Vi~d~p~- 196 (272)
T 3a27_A 121 EVVVDMFAGIGYFTIPLAKYSK--PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVE-LKDVADRVIMGYVH- 196 (272)
T ss_dssp CEEEETTCTTTTTHHHHHHHTC--CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCC-CTTCEEEEEECCCS-
T ss_pred CEEEEecCcCCHHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcC-ccCCceEEEECCcc-
Confidence 47999999999998887643 1 0123333322 222221 1123211 2221122222 25689998655432
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEEecchh------HHHH-HHHHHhhcCccc
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS------IINY-IRKFITALKWDG 521 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~------~~~~-~~~~~~~~~w~~ 521 (555)
....++.++-|.|+|||.+++.+... .+.+ ++.+...+.+++
T Consensus 197 -------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (272)
T 3a27_A 197 -------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKL 245 (272)
T ss_dssp -------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEE
T ss_pred -------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCee
Confidence 46778999999999999999886543 3444 444444454544
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.019 Score=59.45 Aligned_cols=99 Identities=13% Similarity=0.148 Sum_probs=61.1
Q ss_pred CCcceeEeeccCCcchhhhhccCC-CceEEEecccCCCCchhHHhhc-cccchhcccccCCCCCCCccchhhcccccccc
Q 008748 397 KNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYDR-GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEI 474 (555)
Q Consensus 397 ~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~~~l~~i~~r-gl~g~~~~~ce~~~typrtydl~h~~~~~s~~ 474 (555)
......|+|++||.|.++.+|.+. |-. .++-.+-+..+...-++ ++-=+-+|.-++ +|.. |++.+.+++-.+
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~---~p~~-D~v~~~~vlh~~ 272 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTI--KGVNFDLPHVISEAPQFPGVTHVGGDMFKE---VPSG-DTILMKWILHDW 272 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTC--EEEEEECHHHHTTCCCCTTEEEEECCTTTC---CCCC-SEEEEESCGGGS
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCC--eEEEecCHHHHHhhhhcCCeEEEeCCcCCC---CCCC-CEEEehHHhccC
Confidence 456789999999999999999642 221 11112211111111111 222233555554 4444 999988888644
Q ss_pred ccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 475 EERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 475 ~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
... ....+|-++=|.|+|||.++|-|.
T Consensus 273 ~d~--~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 273 SDQ--HCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp CHH--HHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CHH--HHHHHHHHHHHHcCCCCEEEEEEe
Confidence 321 246789999999999999998653
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.025 Score=64.90 Aligned_cols=99 Identities=14% Similarity=0.172 Sum_probs=64.3
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----------ccc--cchhcccccCCCCCCCccchhh
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----------RGL--IGTVHDWCESFSTYPRTYDLLH 466 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----------rgl--~g~~~~~ce~~~typrtydl~h 466 (555)
-..|+|++||.|.++.+|...---.-.|+-+|-. .-|...-+ .|+ |-.++.=-+.++....+||+|.
T Consensus 722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV 801 (950)
T 3htx_A 722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGT 801 (950)
T ss_dssp CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEE
Confidence 3579999999999999998653111245555543 44444332 244 2233333334555568999999
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 467 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 467 ~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
+..+|..+... ....++-||-|+|||| .+||.
T Consensus 802 ~~eVLeHL~dp--~l~~~L~eI~RvLKPG-~LIIS 833 (950)
T 3htx_A 802 CLEVIEHMEED--QACEFGEKVLSLFHPK-LLIVS 833 (950)
T ss_dssp EESCGGGSCHH--HHHHHHHHHHHTTCCS-EEEEE
T ss_pred EeCchhhCChH--HHHHHHHHHHHHcCCC-EEEEE
Confidence 99998865421 1345788999999999 77765
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=94.76 E-value=0.017 Score=55.50 Aligned_cols=133 Identities=14% Similarity=0.206 Sum_probs=67.3
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhc-----cccchhcccccC--CCCCCCccchhhccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR-----GLIGTVHDWCES--FSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~r-----gl~g~~~~~ce~--~~typrtydl~h~~~~~ 471 (555)
.+|+|++||.|.++..|.+. +- -.|+-++-. ..+...-++ .+.-+..|..++ +..++.+||+|-.+ +
T Consensus 76 ~~VLDlGcG~G~~~~~la~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~--~ 151 (230)
T 1fbn_A 76 SKILYLGASAGTTPSHVADIADK--GIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED--V 151 (230)
T ss_dssp CEEEEESCCSSHHHHHHHHHTTT--SEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEEC--C
T ss_pred CEEEEEcccCCHHHHHHHHHcCC--cEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEe--c
Confidence 47999999999999888643 21 123333322 222211111 111112233221 01234679987511 1
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEE----ecch------h-HHHHHHHHHhhcCccceecccccccccCCCCCceE
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVII----RDKS------S-IINYIRKFITALKWDGWLSEVEPRIDALSSSEERV 540 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~----rd~~------~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 540 (555)
. .. =....++-++-|+|+|||.+++ +... . .-..++ ++....++.. ...+ -++. ..+.-+
T Consensus 152 ~---~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~-~~~~--~~~~-~~~~~~ 222 (230)
T 1fbn_A 152 A---QP-NQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIV-DEVD--IEPF-EKDHVM 222 (230)
T ss_dssp C---ST-THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEE-EEEE--CTTT-STTEEE
T ss_pred C---Ch-hHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEE-EEEc--cCCC-ccceEE
Confidence 1 10 1135678999999999999999 2211 1 125566 5555555542 1111 1121 123567
Q ss_pred EEEEec
Q 008748 541 LIAKKK 546 (555)
Q Consensus 541 l~~~k~ 546 (555)
++++|+
T Consensus 223 v~~~k~ 228 (230)
T 1fbn_A 223 FVGIWE 228 (230)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 788774
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.0087 Score=57.21 Aligned_cols=91 Identities=14% Similarity=0.152 Sum_probs=52.7
Q ss_pred eeEeeccCCcchhhhhccCC-Cc----eEEEecccCCC-CchhHHhhc----c--------ccchhcccccCCCCCCCcc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DV----WVMNVAPVRMS-ARLKIIYDR----G--------LIGTVHDWCESFSTYPRTY 462 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~----wvmnv~p~~~~-~~l~~i~~r----g--------l~g~~~~~ce~~~typrty 462 (555)
..|+|++||.|.+++.|... +. +--.|+-++-. .-+...-++ | +-=+..|..+.++. ..+|
T Consensus 86 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~f 164 (227)
T 1r18_A 86 ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-NAPY 164 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-GCSE
T ss_pred CEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc-CCCc
Confidence 37999999999999988652 10 00023333322 223222211 2 11122344333322 2589
Q ss_pred chhhccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 463 DLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 463 dl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
|+|++...+. .++-++-|+|+|||.+++--
T Consensus 165 D~I~~~~~~~----------~~~~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 165 NAIHVGAAAP----------DTPTELINQLASGGRLIVPV 194 (227)
T ss_dssp EEEEECSCBS----------SCCHHHHHTEEEEEEEEEEE
T ss_pred cEEEECCchH----------HHHHHHHHHhcCCCEEEEEE
Confidence 9999776554 24467889999999999863
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.017 Score=52.73 Aligned_cols=58 Identities=17% Similarity=0.306 Sum_probs=43.5
Q ss_pred CCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecchh----------HHHHHHHHHhhcCc
Q 008748 459 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS----------IINYIRKFITALKW 519 (555)
Q Consensus 459 prtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~----------~~~~~~~~~~~~~w 519 (555)
+.+||+|.+..++..+. -+...+|-|+-|+|||||.+++.+... ..+++.+.+..-.+
T Consensus 61 ~~~fD~V~~~~~l~~~~---~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 61 ESSFDIILSGLVPGSTT---LHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp SSCEEEEEECCSTTCCC---CCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred CCCEeEEEECChhhhcc---cCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 57999999988776431 246899999999999999999964321 15677777776555
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.0059 Score=58.14 Aligned_cols=90 Identities=14% Similarity=0.091 Sum_probs=53.0
Q ss_pred eeEeeccCCcchhhhhccCC------CceEEEecccCCC-CchhHHhh----ccc-------cc-hhcccccCCC---CC
Q 008748 401 RNVMDMNSNLGGFAAALKDK------DVWVMNVAPVRMS-ARLKIIYD----RGL-------IG-TVHDWCESFS---TY 458 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~------~~wvmnv~p~~~~-~~l~~i~~----rgl-------~g-~~~~~ce~~~---ty 458 (555)
.+|+|++||.|.+++.|... |-. +|+-++.. .-+...-+ .|+ +- +..|..+.+. .-
T Consensus 82 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 159 (227)
T 2pbf_A 82 SRAIDVGSGSGYLTVCMAIKMNVLENKNS--YVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE 159 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHTTTTTCTTC--EEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHhcccCCCCC--EEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence 48999999999999888642 111 33334432 33333222 231 11 1123333210 11
Q ss_pred CCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 459 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 459 prtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+.+||+|+++..+. .++-++-++|+|||.+++--
T Consensus 160 ~~~fD~I~~~~~~~----------~~~~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 160 LGLFDAIHVGASAS----------ELPEILVDLLAENGKLIIPI 193 (227)
T ss_dssp HCCEEEEEECSBBS----------SCCHHHHHHEEEEEEEEEEE
T ss_pred CCCcCEEEECCchH----------HHHHHHHHhcCCCcEEEEEE
Confidence 35799998776654 24577889999999999763
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.0058 Score=62.81 Aligned_cols=94 Identities=16% Similarity=0.209 Sum_probs=60.3
Q ss_pred CcceeEeeccCCcchhhhhccCC-C---ceEEEecccCCCCchhHHhh-ccccchhcccccCCCCCCCccchhhcccccc
Q 008748 398 NTFRNVMDMNSNLGGFAAALKDK-D---VWVMNVAPVRMSARLKIIYD-RGLIGTVHDWCESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 398 ~~~rn~~dm~~~~g~faa~l~~~-~---~wvmnv~p~~~~~~l~~i~~-rgl~g~~~~~ce~~~typrtydl~h~~~~~s 472 (555)
.....|+|++||.|.++.+|.+. | +-+.-. | ..+...-+ .++-=+-+|..++ .|. ||++.+.++|.
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~d~~~~---~p~-~D~v~~~~~lh 257 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-P----QVVENLSGSNNLTYVGGDMFTS---IPN-ADAVLLKYILH 257 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H----HHHTTCCCBTTEEEEECCTTTC---CCC-CSEEEEESCGG
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-H----HHHhhcccCCCcEEEeccccCC---CCC-ccEEEeehhhc
Confidence 35579999999999999999743 3 333322 2 11111111 1222233455443 454 99999999887
Q ss_pred ccccCCCChhhhhhhhcccccC---CceEEEec
Q 008748 473 EIEERGCSFEDLLIEMDRMLRP---EGFVIIRD 502 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp---~g~~i~rd 502 (555)
.+... ....+|-++-|+|+| ||.++|-|
T Consensus 258 ~~~d~--~~~~~l~~~~~~L~p~~~gG~l~i~e 288 (352)
T 1fp2_A 258 NWTDK--DCLRILKKCKEAVTNDGKRGKVTIID 288 (352)
T ss_dssp GSCHH--HHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred cCCHH--HHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 54322 134899999999999 99999864
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.018 Score=58.81 Aligned_cols=143 Identities=14% Similarity=0.156 Sum_probs=75.9
Q ss_pred ceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhhc------cc----cc-hhcccccCCCCCCCccchhh
Q 008748 400 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR------GL----IG-TVHDWCESFSTYPRTYDLLH 466 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~r------gl----~g-~~~~~ce~~~typrtydl~h 466 (555)
-++|+|++||.|+++.+|... +.. .|+-++-. .-+.+.-++ |+ +- +..|..+.....+.+||+|-
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~~~--~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKSVE--NIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTTCC--EEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcCCCC--EEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 368999999999999999876 433 34444432 333332221 11 11 12233322222357899998
Q ss_pred cccccccccc-CCCChhhhhhhhcccccCCceEEEec-----chhHHHHHHHHHhhcCccceecccccccccCCCCCceE
Q 008748 467 AWKVFSEIEE-RGCSFEDLLIEMDRMLRPEGFVIIRD-----KSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERV 540 (555)
Q Consensus 467 ~~~~~s~~~~-~~c~~~~~~~e~drilrp~g~~i~rd-----~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 540 (555)
++. +..... ...--..++-++-|+|+|||.+++.- ..+.+.++.+.++..--.+......-.. +..+.-.+
T Consensus 195 ~d~-~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~--~~~g~w~f 271 (321)
T 2pt6_A 195 VDS-SDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPT--YPCGCIGI 271 (321)
T ss_dssp EEC-CCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTT--SGGGEEEE
T ss_pred ECC-cCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEecc--ccCceEEE
Confidence 764 221110 00111577889999999999999953 2244555555555443333221110001 11123457
Q ss_pred EEEEecc
Q 008748 541 LIAKKKL 547 (555)
Q Consensus 541 l~~~k~~ 547 (555)
++|.|++
T Consensus 272 ~~as~~~ 278 (321)
T 2pt6_A 272 LCCSKTD 278 (321)
T ss_dssp EEEESST
T ss_pred EEeeCCC
Confidence 8888864
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=94.54 E-value=0.012 Score=55.55 Aligned_cols=97 Identities=9% Similarity=0.102 Sum_probs=58.1
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHh----hccc--cchh-cccccCCCCCCCccchhhcccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY----DRGL--IGTV-HDWCESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~----~rgl--~g~~-~~~ce~~~typrtydl~h~~~~~s 472 (555)
.+|+|++||.|.++..+..... -.|+-++.. .-+.+.- ..|+ +-++ .|..+..+.-+.+||+|=++..|.
T Consensus 56 ~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 56 AQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 4799999999999886543321 156666643 4444332 2333 2122 233332233346899998776654
Q ss_pred ccccCCCChhhhhhhh--cccccCCceEEEecch
Q 008748 473 EIEERGCSFEDLLIEM--DRMLRPEGFVIIRDKS 504 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~--drilrp~g~~i~rd~~ 504 (555)
. -....++-++ -|+|+|||.+++....
T Consensus 134 ~-----~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 134 R-----GLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp T-----TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred C-----CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 1 1245566666 4579999999987654
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=94.40 E-value=0.032 Score=55.04 Aligned_cols=107 Identities=17% Similarity=0.103 Sum_probs=68.8
Q ss_pred eeEeeccCCcchhhhhccCC--CceEEEecccCC-CCchhHHhhc----cc----cchhcccccCCCCCCCccchhhccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYDR----GL----IGTVHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~-~~~l~~i~~r----gl----~g~~~~~ce~~~typrtydl~h~~~ 469 (555)
.+|+|++||.|.++.+|... |- .+|+-++. +..+.+.-++ |+ --+..|..+.++ +.+||+|-++-
T Consensus 114 ~~VLDiG~G~G~~~~~la~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~V~~~~ 189 (277)
T 1o54_A 114 DRIIDTGVGSGAMCAVLARAVGSS--GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD--EKDVDALFLDV 189 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHTTTT--CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS--CCSEEEEEECC
T ss_pred CEEEEECCcCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc--CCccCEEEECC
Confidence 47999999999999888643 22 24555554 3455544333 43 112345555433 25799886421
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEecc-hhHHHHHHHHHhhcCcc
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWD 520 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~-~~~~~~~~~~~~~~~w~ 520 (555)
-....++-++-|+|+|||.+++-+. .+-+.++.+.+....|.
T Consensus 190 ---------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~ 232 (277)
T 1o54_A 190 ---------PDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 232 (277)
T ss_dssp ---------SCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred ---------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 1245788899999999999998765 34566777776666554
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.013 Score=59.68 Aligned_cols=143 Identities=10% Similarity=0.032 Sum_probs=75.5
Q ss_pred cceeEeeccCCcchhhhhccCC-CceEEEecccCCC-CchhHHhh------cc-c----cc-hhcccccCCCCCCCccch
Q 008748 399 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYD------RG-L----IG-TVHDWCESFSTYPRTYDL 464 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l~~i~~------rg-l----~g-~~~~~ce~~~typrtydl 464 (555)
.-++|+|++||.|+++..|... ++ .+|+=++-. .-+.+.-+ .| + +- +..|-.+-...-+.+||+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTV--EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTC--CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccE
Confidence 3478999999999999999876 33 234434332 22222111 11 1 11 111221111122578999
Q ss_pred hhcccccccc---c-cCCCChhhhhhhhcccccCCceEEEec------chhHHHHHHHHHhhcCccceecccccccccCC
Q 008748 465 LHAWKVFSEI---E-ERGCSFEDLLIEMDRMLRPEGFVIIRD------KSSIINYIRKFITALKWDGWLSEVEPRIDALS 534 (555)
Q Consensus 465 ~h~~~~~s~~---~-~~~c~~~~~~~e~drilrp~g~~i~rd------~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 534 (555)
|-++.... . . ...--...++-++-|+|+|||.+++.- ..+.+..+.+.++..--.+..... .-|..
T Consensus 155 Ii~d~~~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~---~vP~~ 230 (314)
T 1uir_A 155 VIIDLTDP-VGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKN---HIPGF 230 (314)
T ss_dssp EEEECCCC-BSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEE---EEGGG
T ss_pred EEECCCCc-ccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEE---ecCCC
Confidence 99875432 2 0 000013577889999999999999862 234455555555554333321110 00111
Q ss_pred CCCceEEEEEecc
Q 008748 535 SSEERVLIAKKKL 547 (555)
Q Consensus 535 ~~~~~~l~~~k~~ 547 (555)
.+...+++|.|++
T Consensus 231 ~g~~~~~~as~~~ 243 (314)
T 1uir_A 231 FLNFGFLLASDAF 243 (314)
T ss_dssp TEEEEEEEEESSS
T ss_pred CCeEEEEEEECCC
Confidence 2345688898873
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.31 E-value=0.073 Score=53.51 Aligned_cols=42 Identities=19% Similarity=0.117 Sum_probs=33.1
Q ss_pred CCEEEEECCCCcHHHHHHhc--CCCccccCChhhhhHHHHHHHH
Q 008748 156 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFAL 197 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~--~~V~~vdis~~dls~a~i~~A~ 197 (555)
...|||++||+|..+..++. +.++++|+++..+..+..+...
T Consensus 236 ~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 236 GDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHH
Confidence 35899999999999888775 4789999999887666654433
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=94.25 E-value=0.042 Score=53.93 Aligned_cols=108 Identities=15% Similarity=0.141 Sum_probs=65.1
Q ss_pred eeEeeccCCcchhhhhccCC--CceEEEecccCCC-CchhHHhhc-----c-ccc----hhcccccCCCCCCCccchhhc
Q 008748 401 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMS-ARLKIIYDR-----G-LIG----TVHDWCESFSTYPRTYDLLHA 467 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~~-~~l~~i~~r-----g-l~g----~~~~~ce~~~typrtydl~h~ 467 (555)
.+|+|++||.|.++.+|... |- .+|+-++-. ..+...-++ | +.. +..|..+. +.-+.+||+|-+
T Consensus 101 ~~vLdiG~G~G~~~~~l~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~-~~~~~~~D~v~~ 177 (280)
T 1i9g_A 101 ARVLEAGAGSGALTLSLLRAVGPA--GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-ELPDGSVDRAVL 177 (280)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-CCCTTCEEEEEE
T ss_pred CEEEEEcccccHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc-CCCCCceeEEEE
Confidence 37999999999999988653 21 145555543 444443332 3 211 22344443 211468998875
Q ss_pred cccccccccCCCChhhhhhhhcccccCCceEEEec-chhHHHHHHHHHhh-cCcc
Q 008748 468 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITA-LKWD 520 (555)
Q Consensus 468 ~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd-~~~~~~~~~~~~~~-~~w~ 520 (555)
+. -....++-++-|+|+|||.+++-. ..+.+.++...+.. ..|.
T Consensus 178 ~~---------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~ 223 (280)
T 1i9g_A 178 DM---------LAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 223 (280)
T ss_dssp ES---------SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred CC---------cCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcC
Confidence 21 135578999999999999999854 34445555555544 5554
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.011 Score=58.83 Aligned_cols=94 Identities=11% Similarity=0.120 Sum_probs=58.2
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCC-C-CchhHHhh---------ccc-------cc-hhcccccCCCCC---
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-S-ARLKIIYD---------RGL-------IG-TVHDWCESFSTY--- 458 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~-~-~~l~~i~~---------rgl-------~g-~~~~~ce~~~ty--- 458 (555)
.+|+|++||.|.++.+|..... -.|+-++- . ..|.++-+ .|+ +- ...+|.+.....
T Consensus 81 ~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 158 (281)
T 3bzb_A 81 KTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRC 158 (281)
T ss_dssp CEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHH
T ss_pred CeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence 4799999999999887765432 14555554 2 33433222 222 21 225677654322
Q ss_pred --CCccchhhccccccccccCCCChhhhhhhhccccc---C--CceEEE
Q 008748 459 --PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLR---P--EGFVII 500 (555)
Q Consensus 459 --prtydl~h~~~~~s~~~~~~c~~~~~~~e~drilr---p--~g~~i~ 500 (555)
+.+||+|-+..++-.. -....++-++.|+|+ | ||.+++
T Consensus 159 ~~~~~fD~Ii~~dvl~~~----~~~~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 159 TGLQRFQVVLLADLLSFH----QAHDALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp HSCSSBSEEEEESCCSCG----GGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred ccCCCCCEEEEeCcccCh----HHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence 4689999876655421 236789999999999 9 996543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=94.22 E-value=0.049 Score=54.03 Aligned_cols=130 Identities=15% Similarity=0.062 Sum_probs=68.7
Q ss_pred cceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh------ccc----cchhcccccCCCCCCCccchhhc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD------RGL----IGTVHDWCESFSTYPRTYDLLHA 467 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~------rgl----~g~~~~~ce~~~typrtydl~h~ 467 (555)
.-++|+|++||.|+++.++...+ -.|+=++-. .-+.+.-+ .|+ +-+.+.=...| +.+||+|=+
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~---~~~fD~Ii~ 145 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD---IKKYDLIFC 145 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC---CCCEEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH---HhhCCEEEE
Confidence 34789999999999999887664 345444432 11111111 011 11111111122 278999976
Q ss_pred cccccccccCCCChhhhhhhhcccccCCceEEEecc-----hhHHHHHHHHHhhcCccceecccccccccCCCCCceEEE
Q 008748 468 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK-----SSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLI 542 (555)
Q Consensus 468 ~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~-----~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~ 542 (555)
+. + . -...+-++-|.|+|||.+++... .+.+..+.+.++..--.+. .....-|. .+...+++
T Consensus 146 d~--~---d----p~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~---~~~~~vP~-~g~~~~~~ 212 (262)
T 2cmg_A 146 LQ--E---P----DIHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAM---PFVAPLRI-LSNKGYIY 212 (262)
T ss_dssp SS--C---C----CHHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEE---EECCTTCT-TCCEEEEE
T ss_pred CC--C---C----hHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceE---EEEEccCC-CcccEEEE
Confidence 62 1 1 12367799999999999998621 1233344433333311221 11111222 23456788
Q ss_pred EEecc
Q 008748 543 AKKKL 547 (555)
Q Consensus 543 ~~k~~ 547 (555)
|.|++
T Consensus 213 as~~~ 217 (262)
T 2cmg_A 213 ASFKT 217 (262)
T ss_dssp EESSC
T ss_pred eeCCC
Confidence 88863
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.0086 Score=57.64 Aligned_cols=90 Identities=16% Similarity=0.153 Sum_probs=52.2
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----ccccc---hhcccccCCCCCCCccchhhccccc
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGLIG---TVHDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl~g---~~~~~ce~~~typrtydl~h~~~~~ 471 (555)
-.+|+|++||.|.+++.|...-- .+|+-++.. ..+...-+ .|+-. ...|....++. ...||+|.++..+
T Consensus 92 ~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~ 168 (235)
T 1jg1_A 92 GMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP-KAPYDVIIVTAGA 168 (235)
T ss_dssp TCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG-GCCEEEEEECSBB
T ss_pred CCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCC-CCCccEEEECCcH
Confidence 34899999999999998865310 234444432 33333222 23311 11233223321 1249999877765
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
.. +.-++-|+|+|||.+++--
T Consensus 169 ~~----------~~~~~~~~L~pgG~lvi~~ 189 (235)
T 1jg1_A 169 PK----------IPEPLIEQLKIGGKLIIPV 189 (235)
T ss_dssp SS----------CCHHHHHTEEEEEEEEEEE
T ss_pred HH----------HHHHHHHhcCCCcEEEEEE
Confidence 52 2237789999999999864
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=94.19 E-value=0.035 Score=55.91 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=29.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHH
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHEN 191 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a 191 (555)
...+||.+||.|..+..|+++ .|+|+|.++..+..+
T Consensus 23 gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A 60 (285)
T 1wg8_A 23 GGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARA 60 (285)
T ss_dssp TCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 358999999999999999975 688888877766433
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=94.15 E-value=0.015 Score=56.58 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=30.8
Q ss_pred CccchhhccccccccccC-----CCChhhhhhhhcccccCCceEEEecch
Q 008748 460 RTYDLLHAWKVFSEIEER-----GCSFEDLLIEMDRMLRPEGFVIIRDKS 504 (555)
Q Consensus 460 rtydl~h~~~~~s~~~~~-----~c~~~~~~~e~drilrp~g~~i~rd~~ 504 (555)
.+||+|-++..|...... .-....++-++-|+|+|||++++-+..
T Consensus 167 ~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 167 SAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDRS 216 (250)
T ss_dssp CCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred CCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence 489999887665421110 012347888999999999999986543
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.007 Score=61.41 Aligned_cols=92 Identities=17% Similarity=0.077 Sum_probs=55.7
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCC-CCchhHHhhc----cccc---hhcccccCCCCCCCccchhhcccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GLIG---TVHDWCESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~-~~~l~~i~~r----gl~g---~~~~~ce~~~typrtydl~h~~~~~s 472 (555)
.+|+|++||.|+++..|...-.=--+|+-++- +..+...-++ |+-. ...|..+... -..+||+|.+...+.
T Consensus 77 ~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~-~~~~fD~Iv~~~~~~ 155 (317)
T 1dl5_A 77 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP-EFSPYDVIFVTVGVD 155 (317)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-GGCCEEEEEECSBBS
T ss_pred CEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc-cCCCeEEEEEcCCHH
Confidence 48999999999999888643000012444443 2444443333 5422 1223333221 235899999888776
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
.+. -++-|+|+|||.+++...
T Consensus 156 ~~~----------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 156 EVP----------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp CCC----------HHHHHHEEEEEEEEEEBC
T ss_pred HHH----------HHHHHhcCCCcEEEEEEC
Confidence 322 367889999999999754
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.034 Score=54.46 Aligned_cols=99 Identities=16% Similarity=0.195 Sum_probs=57.7
Q ss_pred cCCCcceeEeeccCCcchhhhhccCC-----CceEEEecccCCCCchhHHhhcc-ccchhcccccC--CCCCCCccchhh
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDRG-LIGTVHDWCES--FSTYPRTYDLLH 466 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~-----~~wvmnv~p~~~~~~l~~i~~rg-l~g~~~~~ce~--~~typrtydl~h 466 (555)
|+.|. .|+|++||.|.|+.+|.+. .|....+-|.-...-....-+++ +.-+..|-+.+ .+.-+-++|++.
T Consensus 75 ikpG~--~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf 152 (233)
T 4df3_A 75 VKEGD--RILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLY 152 (233)
T ss_dssp CCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEE
T ss_pred CCCCC--EEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEE
Confidence 55555 7999999999999999642 35555543332111112223343 33333344332 122234677765
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 467 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 467 ~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
++-.+. =....++-|+-|+|+|||.++|-
T Consensus 153 ~d~~~~------~~~~~~l~~~~r~LKpGG~lvI~ 181 (233)
T 4df3_A 153 ADVAQP------EQAAIVVRNARFFLRDGGYMLMA 181 (233)
T ss_dssp ECCCCT------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred EeccCC------hhHHHHHHHHHHhccCCCEEEEE
Confidence 432221 12456888999999999999985
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 555 | ||||
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 9e-07 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 7e-04 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 0.001 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 0.003 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 0.003 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.004 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 0.004 |
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 48.2 bits (113), Expect = 9e-07
Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 2/146 (1%)
Query: 149 KLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVL 208
K + +R VLD+ CG L + L ++ + + +
Sbjct: 35 KEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQ 94
Query: 209 GTKRLPYPSRSFELAHCSRCRIDWLQRDGI--LLLELDRLLRPGGYFVYSSPEAYAHDPE 266
G F+ I + + + L ++ L+PGG F+ P + +
Sbjct: 95 GDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRD 154
Query: 267 NRRIWNAMYDLLKSMCWKIVSKKDQT 292
+WN K + +
Sbjct: 155 GPVVWNEQKGEEKLVIMDWREVEPAV 180
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 39.2 bits (90), Expect = 7e-04
Identities = 16/120 (13%), Positives = 32/120 (26%), Gaps = 5/120 (4%)
Query: 159 VLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY 215
+LD+G G + ++ + + + +
Sbjct: 37 ILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV 96
Query: 216 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMY 275
+ ++A C G L + L+PGG + P + P I A
Sbjct: 97 ANEKCDVAACVGATWIAGGFAGA-EELLAQSLKPGGIMLIGEP-YWRQLPATEEIAQACG 154
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 39.0 bits (89), Expect = 0.001
Identities = 26/154 (16%), Positives = 55/154 (35%), Gaps = 9/154 (5%)
Query: 134 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQI 193
K+ L + F + L N VLD+G G + +L + + P+
Sbjct: 24 KWKLYHRLIGSFLEEYLKNPCR---VLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVA 80
Query: 194 QFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYF 253
+ + + + LP+PS +FE + +++ E+ R+L P G
Sbjct: 81 REKGVKNVVEA----KAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLL 136
Query: 254 VYSSP--EAYAHDPENRRIWNAMYDLLKSMCWKI 285
+ + + + W+ + LK+ +
Sbjct: 137 IATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSV 170
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 37.3 bits (85), Expect = 0.003
Identities = 19/148 (12%), Positives = 41/148 (27%), Gaps = 3/148 (2%)
Query: 151 NNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT 210
N + LD+ CG + L ++ + ++ +
Sbjct: 33 ENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQD 92
Query: 211 KRLPYPSRSFELAHCSRCRIDWLQRDGIL---LLELDRLLRPGGYFVYSSPEAYAHDPEN 267
+R F+L C +++ L + L+ GG F++ Y
Sbjct: 93 ISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVL 152
Query: 268 RRIWNAMYDLLKSMCWKIVSKKDQTVIW 295
D W+ + D ++
Sbjct: 153 GNNDFNYDDDEVFYYWENQFEDDLVSMY 180
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 37.0 bits (85), Expect = 0.003
Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 4/101 (3%)
Query: 159 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYP 216
+L +G + +++ + A + ++ L+ + + +LG P
Sbjct: 78 ILYLGASAGTTPSHVADIADKGIVYA-IEYAPRIMRELLDACAERENIIPILGDANKPQE 136
Query: 217 SR-SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYS 256
E + + IL+ L+ GGY + +
Sbjct: 137 YANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA 177
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 37.2 bits (85), Expect = 0.004
Identities = 16/126 (12%), Positives = 37/126 (29%), Gaps = 2/126 (1%)
Query: 142 MLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI 201
+ F + + +++D GCG G L+ D E + A E
Sbjct: 14 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFR 73
Query: 202 PSTLGVLGTKRLPYPSRSFELAHCSRCR--IDWLQRDGILLLELDRLLRPGGYFVYSSPE 259
+ + + C + + +L ++ ++ GG + P
Sbjct: 74 LLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 133
Query: 260 AYAHDP 265
++
Sbjct: 134 WISNMA 139
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 37.0 bits (85), Expect = 0.004
Identities = 13/102 (12%), Positives = 34/102 (33%), Gaps = 1/102 (0%)
Query: 157 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP 216
++L+VG G + +Y+L +L + E+ ++ A++
Sbjct: 87 MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI 146
Query: 217 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 258
+ D + ++ +++PG + P
Sbjct: 147 ADFISDQMYDAVIADIPDPWNH-VQKIASMMKPGSVATFYLP 187
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 555 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.76 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.73 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.68 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.66 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.66 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.64 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.63 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.62 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.62 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.59 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.56 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.56 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.53 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.51 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.49 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.45 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.43 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.42 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.41 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.4 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.39 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.38 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.38 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.38 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.38 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.36 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.34 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.33 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.31 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.31 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.29 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.28 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.22 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.21 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.19 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.19 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.17 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.15 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.14 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.07 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.05 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.04 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.01 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.98 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.98 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.96 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.92 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.87 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.8 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.74 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.74 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.62 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.62 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.58 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.49 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.49 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.41 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.38 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.3 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.26 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.24 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.24 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.23 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.21 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.2 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.19 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.17 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.16 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.14 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.0 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.93 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.9 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 97.86 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.83 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.78 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 97.77 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.76 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.75 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 97.74 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 97.72 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 97.68 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 97.68 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 97.62 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 97.62 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 97.61 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.58 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 97.56 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.54 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 97.5 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 97.5 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.48 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.47 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 97.45 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.39 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 97.38 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 97.36 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.34 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 97.31 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.31 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.24 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.22 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 97.22 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 97.21 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 97.15 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 97.14 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 97.14 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.12 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 97.12 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.12 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.09 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 97.07 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.95 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 96.94 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 96.91 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 96.9 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.76 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 96.72 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.67 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 96.58 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 96.58 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 96.56 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 96.51 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 96.48 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 96.46 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 96.45 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.39 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.34 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 96.28 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 96.24 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 96.15 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 95.98 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 95.54 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 95.47 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 95.45 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 94.97 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 94.92 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 94.9 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 94.75 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 94.21 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 94.07 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 93.98 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 93.89 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.44 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 93.4 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 93.06 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 90.99 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 90.86 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 90.78 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 90.44 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 89.66 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 89.62 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 89.59 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 88.0 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 87.56 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 87.52 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 86.64 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 85.74 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 85.32 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 84.58 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 84.42 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 84.05 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 83.33 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 82.67 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 81.63 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 81.59 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 81.29 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 81.17 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 80.1 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.76 E-value=2.6e-18 Score=164.78 Aligned_cols=132 Identities=13% Similarity=0.219 Sum_probs=103.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
..+|||||||+|.++..|++. +|+|+|+++.++..++.+.......++.+.++|...+|+++++||+|+|.. +++|+
T Consensus 16 ~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~-~l~~~ 94 (231)
T d1vl5a_ 16 NEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRI-AAHHF 94 (231)
T ss_dssp CCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEES-CGGGC
T ss_pred cCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhcccccccccccccccccccccccccccccccccc-ccccc
Confidence 468999999999999999874 788999999888777655444445678999999999999999999999988 69999
Q ss_pred cchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHH-----------------HHHHHHHHhcCcEEEEEe
Q 008748 234 QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIW-----------------NAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 234 ~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~-----------------~~l~~l~~~~gw~vv~~~ 289 (555)
+++..+++++.|+|||||++++..+..... ......+ .++.+++++.||++++.+
T Consensus 95 ~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 166 (231)
T d1vl5a_ 95 PNPASFVSEAYRVLKKGGQLLLVDNSAPEN-DAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELH 166 (231)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEEEBCSS-HHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEE
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEeCCCCCC-HHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 999999999999999999999976432111 1000111 257788999999877544
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.73 E-value=2.5e-17 Score=159.28 Aligned_cols=114 Identities=18% Similarity=0.279 Sum_probs=94.4
Q ss_pred HHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC-CCeEEEEeCCC
Q 008748 135 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTK 211 (555)
Q Consensus 135 y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg-~~v~~~~~d~~ 211 (555)
..+.+.+.+.+ .+..+|||||||+|.++..|+++ +|+|+|+|+.++..++.. +...+ .++.+.++|++
T Consensus 4 ~~~~l~~~~~~--------~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~-~~~~~~~~~~~~~~d~~ 74 (234)
T d1xxla_ 4 SLGLMIKTAEC--------RAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSF-AQEKGVENVRFQQGTAE 74 (234)
T ss_dssp HHHHHHHHHTC--------CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH-HHHHTCCSEEEEECBTT
T ss_pred HHHHHHHHhCC--------CCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhh-hcccccccccccccccc
Confidence 34455566654 23468999999999999999975 788999998888776643 33444 46899999999
Q ss_pred CCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 212 RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 212 ~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
.+|+++++||+|+|.. +++|++++..+++++.|+|||||+++++..
T Consensus 75 ~~~~~~~~fD~v~~~~-~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~ 120 (234)
T d1xxla_ 75 SLPFPDDSFDIITCRY-AAHHFSDVRKAVREVARVLKQDGRFLLVDH 120 (234)
T ss_dssp BCCSCTTCEEEEEEES-CGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccceeeeec-eeecccCHHHHHHHHHHeeCCCcEEEEEEc
Confidence 9999999999999988 699999999999999999999999999753
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=2e-17 Score=164.21 Aligned_cols=156 Identities=24% Similarity=0.409 Sum_probs=108.9
Q ss_pred CCCCCCCCCCccCCCCCCCCCCC--CCCCCchhhhhccCCCCccccccccchhhhhcCceeeeCCCCCCCCccHHHHHHH
Q 008748 61 HCPPPERRYNCLVPPPKGYKIPV--RWPASRDEVWKANIPHTHLAEEKSDQHWMVVNGEKINFPGGGTHFHDGADKYILA 138 (555)
Q Consensus 61 ~C~~~~~~~~Cl~~~p~gY~~P~--~Wp~srd~~W~~n~~~~~L~~~k~~~~W~~~~~e~~~F~~~g~~f~~~a~~y~~~ 138 (555)
.|++ .|.|+ .+++||.... +-+.+.+ .++...+..+ +..|...+ +|....+.....
T Consensus 19 ~C~~-~h~fd---~~~~Gy~~ll~~~~~~~~~---------------~~~~~~~~~a--r~~~l~~g-~~~~l~~~~~~~ 76 (268)
T d1p91a_ 19 ICPQ-RHQFD---MAKEGYVNLLPVQHKRSRD---------------PGDSAEMMQA--RRAFLDAG-HYQPLRDAIVAQ 76 (268)
T ss_dssp ECTT-CCEEE---BCTTSCEECSCSSSSCSCC---------------CSSSHHHHHH--HHHHHTTT-TTHHHHHHHHHH
T ss_pred ECCC-CCccc---cccCceEecccccccccCC---------------CCCCHHHHHH--HHHHHHcC-chHHHHHHHHHH
Confidence 6887 67777 6889998433 2222222 1222222222 23343333 445555555555
Q ss_pred HHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC
Q 008748 139 LARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP 214 (555)
Q Consensus 139 l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp 214 (555)
+.+.++ .++.+|||||||+|.++..|++. .++|+|+++. +++.|+++..++.+.++|+..+|
T Consensus 77 l~~~~~---------~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~-----~~~~a~~~~~~~~~~~~d~~~l~ 142 (268)
T d1p91a_ 77 LRERLD---------DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKV-----AIKAAAKRYPQVTFCVASSHRLP 142 (268)
T ss_dssp HHHHSC---------TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHH-----HHHHHHHHCTTSEEEECCTTSCS
T ss_pred HHHhcC---------CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHh-----hhhhhhcccccccceeeehhhcc
Confidence 655554 34468999999999999999875 4456666554 45677777888999999999999
Q ss_pred CCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 215 YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 215 ~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
+++++||+|++.+. +++ ++|+.|+|||||++++++|..
T Consensus 143 ~~~~sfD~v~~~~~-~~~-------~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 143 FSDTSMDAIIRIYA-PCK-------AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp BCTTCEEEEEEESC-CCC-------HHHHHHHEEEEEEEEEEEECT
T ss_pred CCCCCEEEEeecCC-HHH-------HHHHHHHhCCCcEEEEEeeCC
Confidence 99999999998773 544 689999999999999999875
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.66 E-value=4.4e-16 Score=154.81 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=103.6
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
+..+|||||||+|.++..|+++ .|+|+|+++.++..+.... ...+ .++.+..+|+.++|+++++||+|+|.. +
T Consensus 67 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~-~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~-~ 144 (282)
T d2o57a1 67 RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYN-NQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD-A 144 (282)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES-C
T ss_pred CCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccc-ccccccccccccccccccccccccccchhhccc-h
Confidence 4469999999999999999863 6889999988886666333 3334 368999999999999999999999887 6
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEcCCCCC--CChhhHHH-----------HHHHHHHHHhcCcEEEEEeec
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA--HDPENRRI-----------WNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~--~~~e~~~~-----------~~~l~~l~~~~gw~vv~~~~~ 291 (555)
++|++++..+++++.|+|||||+|+++.+.... ........ .....+++++.||..+...+.
T Consensus 145 l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 145 FLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSR 219 (282)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred hhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEEEEC
Confidence 888999999999999999999999997643211 11111111 135678899999987765543
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=1.5e-16 Score=151.05 Aligned_cols=101 Identities=20% Similarity=0.427 Sum_probs=86.7
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 234 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~ 234 (555)
.+|||||||+|.++..|++. .|+|+|+++.++..++ +.+.+.+..+.+..+|+..+++++++||+|+|.. +++|++
T Consensus 39 ~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak-~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~-~l~~~~ 116 (226)
T d1ve3a1 39 GKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAR-EYAKSRESNVEFIVGDARKLSFEDKTFDYVIFID-SIVHFE 116 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEES-CGGGCC
T ss_pred CEEEEECCCcchhhhhHhhhhcccccccccccchhhhh-hhhccccccccccccccccccccCcCceEEEEec-chhhCC
Confidence 58999999999999999975 6899999988887776 4445566778889999999999999999999988 688875
Q ss_pred --chHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 235 --RDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 235 --d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
+...+|+++.|+|||||++++..+.
T Consensus 117 ~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 117 PLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 5567999999999999999987654
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.3e-16 Score=153.22 Aligned_cols=138 Identities=16% Similarity=0.183 Sum_probs=103.8
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
.+..+|||||||+|.++..|+.. .|+++|+++.++..+..+........+.+.++|+..+++++++||+|+|.. ++
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~-~l 137 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQW-VI 137 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEES-CG
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccc-cc
Confidence 34568999999999999988753 588898888888766544333323456899999999999899999999988 68
Q ss_pred ccccch--HHHHHHHHhhcCCCcEEEEEcCCCCCC------ChhhHHHHHHHHHHHHhcCcEEEEEeece
Q 008748 231 DWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAH------DPENRRIWNAMYDLLKSMCWKIVSKKDQT 292 (555)
Q Consensus 231 ~~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~~------~~e~~~~~~~l~~l~~~~gw~vv~~~~~~ 292 (555)
+|++++ ..++.++.++|||||.++++.+..... ........+++.+++++.||+++..+.+.
T Consensus 138 ~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~q~ 207 (222)
T d2ex4a1 138 GHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQE 207 (222)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECC
T ss_pred ccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEEeC
Confidence 888765 469999999999999999976432110 00001124578899999999998776543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.63 E-value=3.5e-16 Score=147.87 Aligned_cols=124 Identities=18% Similarity=0.223 Sum_probs=97.4
Q ss_pred CEEEEECCCCcHHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccccch
Q 008748 157 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 236 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~ 236 (555)
.+|||||||+|.++..+.. ++|+|+++.++ +.|+++ ++.+.++|+.++|+++++||+|+|+. +++|++++
T Consensus 38 ~~vLDiGcG~G~~~~~~~~--~~giD~s~~~~-----~~a~~~--~~~~~~~d~~~l~~~~~~fD~I~~~~-~l~h~~d~ 107 (208)
T d1vlma_ 38 GRGVEIGVGTGRFAVPLKI--KIGVEPSERMA-----EIARKR--GVFVLKGTAENLPLKDESFDFALMVT-TICFVDDP 107 (208)
T ss_dssp SCEEEETCTTSTTHHHHTC--CEEEESCHHHH-----HHHHHT--TCEEEECBTTBCCSCTTCEEEEEEES-CGGGSSCH
T ss_pred CeEEEECCCCcccccccce--EEEEeCChhhc-----cccccc--cccccccccccccccccccccccccc-cccccccc
Confidence 3799999999999988854 57888776655 555555 57889999999999999999999988 69999999
Q ss_pred HHHHHHHHhhcCCCcEEEEEcCCCCCCChhh-------------H--HHHHHHHHHHHhcCcEEEEEee
Q 008748 237 GILLLELDRLLRPGGYFVYSSPEAYAHDPEN-------------R--RIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 237 ~~~L~el~RvLkPGG~lvis~P~~~~~~~e~-------------~--~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
..+++++.|+|+|||.+++..|......... . -.-+++.+++++.||+.++...
T Consensus 108 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 108 ERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred ccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 9999999999999999999887642110000 0 0113788999999998876543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=5.9e-16 Score=150.60 Aligned_cols=145 Identities=14% Similarity=0.119 Sum_probs=106.9
Q ss_pred cHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEE
Q 008748 131 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTL 205 (555)
Q Consensus 131 ~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~--~v~~ 205 (555)
......+.+.+.+.+. ++.+|||||||+|.++..|+++ .|+|+|+++.++..+. +.+.+.+. .+.+
T Consensus 17 ~~~~~~~~l~~~~~l~--------pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar-~~~~~~gl~~~v~~ 87 (245)
T d1nkva_ 17 FTEEKYATLGRVLRMK--------PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAK-RRAEELGVSERVHF 87 (245)
T ss_dssp CCHHHHHHHHHHTCCC--------TTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEE
T ss_pred CCHHHHHHHHHHcCCC--------CCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHH-HHHHHhhccccchh
Confidence 3445566677777653 2468999999999999998763 6888888888876665 34445554 4899
Q ss_pred EEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCC--Chhh-----------HHHHH
Q 008748 206 GVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAH--DPEN-----------RRIWN 272 (555)
Q Consensus 206 ~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~--~~e~-----------~~~~~ 272 (555)
.++|+..+ +++++||+|+|.. +++|..++..+++++.|+|||||++++..+..... ..+. .....
T Consensus 88 ~~~d~~~~-~~~~~fD~v~~~~-~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (245)
T d1nkva_ 88 IHNDAAGY-VANEKCDVAACVG-ATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLP 165 (245)
T ss_dssp EESCCTTC-CCSSCEEEEEEES-CGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHH
T ss_pred hhhHHhhc-cccCceeEEEEEe-hhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHH
Confidence 99999888 4678999999988 58889999999999999999999999987532111 0110 01223
Q ss_pred HHHHHHHhcCcEEE
Q 008748 273 AMYDLLKSMCWKIV 286 (555)
Q Consensus 273 ~l~~l~~~~gw~vv 286 (555)
.+...+++.||+++
T Consensus 166 ~~~~~~~~aG~~~v 179 (245)
T d1nkva_ 166 GLVGAFDDLGYDVV 179 (245)
T ss_dssp HHHHHHHTTTBCCC
T ss_pred HHHHHHHHcCCEEE
Confidence 56778888888654
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.62 E-value=3.4e-16 Score=150.44 Aligned_cols=99 Identities=20% Similarity=0.404 Sum_probs=82.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
..+|||||||+|.++..|++. .|+|+|+++.+ ++.|++++.. .+..+++.++++++++||+|+|...++||.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~-----l~~a~~~~~~-~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~ 116 (246)
T d2avna1 43 PCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEM-----LEVAREKGVK-NVVEAKAEDLPFPSGAFEAVLALGDVLSYV 116 (246)
T ss_dssp CCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHH-----HHHHHHHTCS-CEEECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred CCEEEEECCCCchhcccccccceEEEEeeccccc-----cccccccccc-ccccccccccccccccccceeeecchhhhh
Confidence 358999999999999999986 46666666554 4666666544 356789999999999999999877689999
Q ss_pred cchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 234 QRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 234 ~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
+++..+|+++.|+|||||+++++.|..
T Consensus 117 ~d~~~~l~~i~r~Lk~gG~~ii~~~~~ 143 (246)
T d2avna1 117 ENKDKAFSEIRRVLVPDGLLIATVDNF 143 (246)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred hhHHHHHHHHHhhcCcCcEEEEEECCH
Confidence 999999999999999999999988753
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.59 E-value=1.7e-15 Score=145.78 Aligned_cols=136 Identities=18% Similarity=0.220 Sum_probs=102.6
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
+.+|||||||+|.++..|++. .|+|+|+++.++ +.|+++ ..++.+..++.+.++++ ++||+|+|.. +++|
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i-----~~a~~~~~~~~~~~~~~~~~~~~~-~~fD~I~~~~-vleh 93 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAI-----SHAQGRLKDGITYIHSRFEDAQLP-RRYDNIVLTH-VLEH 93 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHH-----HHHHHHSCSCEEEEESCGGGCCCS-SCEEEEEEES-CGGG
T ss_pred CCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHh-----hhhhcccccccccccccccccccc-cccccccccc-eeEe
Confidence 357999999999999999875 677777766555 555544 34578888888888764 7899999887 7999
Q ss_pred ccchHHHHHHHH-hhcCCCcEEEEEcCCCCCC-------------C----hhhH-------HHHHHHHHHHHhcCcEEEE
Q 008748 233 LQRDGILLLELD-RLLRPGGYFVYSSPEAYAH-------------D----PENR-------RIWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 233 ~~d~~~~L~el~-RvLkPGG~lvis~P~~~~~-------------~----~e~~-------~~~~~l~~l~~~~gw~vv~ 287 (555)
++++..+|.++. |+|+|||.++++.|+.... . .... -.++.+++++++.||+++.
T Consensus 94 ~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~ 173 (225)
T d2p7ia1 94 IDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTY 173 (225)
T ss_dssp CSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred cCCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEE
Confidence 999999999998 8999999999998763210 0 0000 0145799999999999886
Q ss_pred EeeceEEeecCCCc
Q 008748 288 KKDQTVIWAKPISN 301 (555)
Q Consensus 288 ~~~~~~iw~KPl~~ 301 (555)
.+. +.-||..+
T Consensus 174 ~~~---~~~kp~~~ 184 (225)
T d2p7ia1 174 RSG---IFFKALAN 184 (225)
T ss_dssp EEE---EEECCSCH
T ss_pred EEE---EEeccccH
Confidence 543 44567654
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.56 E-value=3.7e-15 Score=144.27 Aligned_cols=103 Identities=19% Similarity=0.316 Sum_probs=86.5
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
+.++|||||||+|.++..|++. .|+|+|+++.++..++. .+.+.+.++.+.++|+.+++++ ++||+|+|.+.+++|
T Consensus 41 ~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~-~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~ 118 (251)
T d1wzna1 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARR-KAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118 (251)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred CCCEEEEeCCCCCccchhhcccceEEEEEeecccccccccc-ccccccccchheehhhhhcccc-cccchHhhhhhhhhc
Confidence 4468999999999999999875 68899999888876664 4455677899999999999988 589999998767777
Q ss_pred c--cchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 233 L--QRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 233 ~--~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
. ++...+|++++++|||||++++..+.
T Consensus 119 ~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 119 FDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 6 34567999999999999999997765
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.56 E-value=1e-15 Score=150.73 Aligned_cols=135 Identities=15% Similarity=0.182 Sum_probs=99.0
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
.+..+|||+|||+|.++..|+.. .|+++|+++.++..+..+.. ....+.+.+.+++.+++++++||+|+|.. ++
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~fD~I~~~~-vl 168 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELA--GMPVGKFILASMETATLPPNTYDLIVIQW-TA 168 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTT--TSSEEEEEESCGGGCCCCSSCEEEEEEES-CG
T ss_pred CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccc--ccccceeEEccccccccCCCccceEEeec-cc
Confidence 34568999999999999987742 57888888777755542221 12346888999999999999999999988 58
Q ss_pred ccccch--HHHHHHHHhhcCCCcEEEEEcCCCCC-------CChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 231 DWLQRD--GILLLELDRLLRPGGYFVYSSPEAYA-------HDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 231 ~~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~-------~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
+|++++ ..+|+++.++|+|||++++..+.... .+.......+.+++++++.||+++..+.+
T Consensus 169 ~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~q 238 (254)
T d1xtpa_ 169 IYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQ 238 (254)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred cccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEee
Confidence 888765 46899999999999999997643210 00001112356788999999999876554
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.53 E-value=1.1e-14 Score=145.07 Aligned_cols=117 Identities=15% Similarity=0.215 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEE
Q 008748 133 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGV 207 (555)
Q Consensus 133 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~ 207 (555)
+.|.+.+.+.+.. ..++.+|||||||+|.++..|++. .|+|+|+++.++..+.. .+...+.++.+.+
T Consensus 12 ~d~l~~l~~~~~~-------~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~-~~~~~~~~~~f~~ 83 (281)
T d2gh1a1 12 DDYVSFLVNTVWK-------ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARE-LFRLLPYDSEFLE 83 (281)
T ss_dssp HHHHHHHHHTTSC-------CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHH-HHHSSSSEEEEEE
T ss_pred HHHHHHHHHHHhc-------cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhc-ccccccccccccc
Confidence 4455555554321 134579999999999999999862 57889998888766653 3344466788999
Q ss_pred eCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 208 LGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 208 ~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
.|+..++++ ++||+|+|.. +++|++++..+++++.++|||||.+++.+|.
T Consensus 84 ~d~~~~~~~-~~fD~v~~~~-~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 84 GDATEIELN-DKYDIAICHA-FLLHMTTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp SCTTTCCCS-SCEEEEEEES-CGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ccccccccc-CCceEEEEeh-hhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 999999886 5799999988 6999999999999999999999999998875
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.51 E-value=1.9e-14 Score=139.59 Aligned_cols=103 Identities=18% Similarity=0.355 Sum_probs=84.2
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
++++|||||||+|.++..|++. .|+|+|+|+.|+..++ +.+...+.++.+.++|+..++++ ++||+|+|...+++|
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~i~~~~~~~~~ 114 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAE-NKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHH-HHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGG
T ss_pred CCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhcc-ccccccCccceeeccchhhhccc-ccccccceeeeeeec
Confidence 3468999999999999999985 6889999888887766 34455677899999999888875 689999987656776
Q ss_pred cc---chHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 233 LQ---RDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 233 ~~---d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
.. +...+|++++++|+|||.|++..+.
T Consensus 115 ~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 144 (246)
T d1y8ca_ 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 64 4456899999999999999986543
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.49 E-value=8e-14 Score=133.55 Aligned_cols=100 Identities=18% Similarity=0.205 Sum_probs=75.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC------CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~------~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~ 227 (555)
..+|||||||+|..+..|++. +|+|+|+|+.|+..+..+.+ +.+. .+.+...|...++ ...+|+|+|+.
T Consensus 40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~-~~~~~~~~~~~~~d~~~~~--~~~~d~i~~~~ 116 (225)
T d1im8a_ 40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIA-AYHSEIPVEILCNDIRHVE--IKNASMVILNF 116 (225)
T ss_dssp TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHH-TSCCSSCEEEECSCTTTCC--CCSEEEEEEES
T ss_pred CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhH-hhcccchhhhccchhhccc--cccceeeEEee
Confidence 358999999999999888752 57888888888876664433 2233 3455555555554 45799999887
Q ss_pred cccccc--cchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 228 CRIDWL--QRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 228 ~~l~~~--~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
++||. ++...+|++++|+|||||.|+++++.
T Consensus 117 -~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~ 149 (225)
T d1im8a_ 117 -TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 149 (225)
T ss_dssp -CGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -eccccChhhHHHHHHHHHHhCCCCceeeccccc
Confidence 57887 46678999999999999999998654
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.45 E-value=9.4e-14 Score=130.58 Aligned_cols=98 Identities=19% Similarity=0.390 Sum_probs=80.7
Q ss_pred CEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCCCCCCCccEEEecccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 233 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~ 233 (555)
.+|||||||+|..+..|+++ .|+++|+++.++..+.... .+.+. .+.+...|...+++ +++||+|+|.. +++|+
T Consensus 32 grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~-~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~-~~~~~ 108 (198)
T d2i6ga1 32 GRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIK-AAEGLDNLQTDLVDLNTLTF-DGEYDFILSTV-VMMFL 108 (198)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-HHTTCTTEEEEECCTTTCCC-CCCEEEEEEES-CGGGS
T ss_pred CcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHh-hhccccchhhhheecccccc-cccccEEEEee-eeecC
Confidence 48999999999999999986 7889999998887766443 34444 57888899888876 47899999888 58887
Q ss_pred cch--HHHHHHHHhhcCCCcEEEEEc
Q 008748 234 QRD--GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 234 ~d~--~~~L~el~RvLkPGG~lvis~ 257 (555)
++. ..+++++.++|+|||++++..
T Consensus 109 ~~~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 109 EAQTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp CTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 654 469999999999999999865
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.43 E-value=1e-13 Score=139.13 Aligned_cols=154 Identities=12% Similarity=0.140 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCC--eEEEE
Q 008748 133 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIP--STLGV 207 (555)
Q Consensus 133 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~rg~~--v~~~~ 207 (555)
....+.+.+.+.+ .++.+|||||||.|.++.++++ ..|+|+++|...+..++ +.+.+.+.. +.+..
T Consensus 47 ~~k~~~~~~~l~l--------~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~-~~~~~~~l~~~v~~~~ 117 (291)
T d1kpia_ 47 YAKRKLALDKLNL--------EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDK-AMFDEVDSPRRKEVRI 117 (291)
T ss_dssp HHHHHHHHHTTCC--------CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHSCCSSCEEEEE
T ss_pred HHHHHHHHHhcCC--------CCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHH-HHHHhhccchhhhhhh
Confidence 3444455555543 3456999999999999999985 37788888887766555 334444543 45555
Q ss_pred eCCCCCCCCCCCccEEEecccccccccc---------hHHHHHHHHhhcCCCcEEEEEcC---CCC------CCChhhH-
Q 008748 208 LGTKRLPYPSRSFELAHCSRCRIDWLQR---------DGILLLELDRLLRPGGYFVYSSP---EAY------AHDPENR- 268 (555)
Q Consensus 208 ~d~~~Lp~~d~sFDlVv~s~~~l~~~~d---------~~~~L~el~RvLkPGG~lvis~P---~~~------~~~~e~~- 268 (555)
.|. ++.+++||.|+|.. .++|+.+ ...+++++.|+|||||.+++.+- ... ...+...
T Consensus 118 ~d~---~~~~~~fD~i~sie-~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~ 193 (291)
T d1kpia_ 118 QGW---EEFDEPVDRIVSLG-AFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLL 193 (291)
T ss_dssp CCG---GGCCCCCSEEEEES-CGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHH
T ss_pred hcc---cccccccceEeech-hHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhc
Confidence 554 45568999999888 5777654 46899999999999999997541 110 0000000
Q ss_pred --------HH--------HHHHHHHHHhcCcEEEEEeeceEEeecCC
Q 008748 269 --------RI--------WNAMYDLLKSMCWKIVSKKDQTVIWAKPI 299 (555)
Q Consensus 269 --------~~--------~~~l~~l~~~~gw~vv~~~~~~~iw~KPl 299 (555)
.+ ..++...+++.||++...++....|.|++
T Consensus 194 ~~~~fi~kyiFpgg~lps~~~~~~~~e~~gl~v~~~~~~~~hYa~TL 240 (291)
T d1kpia_ 194 RFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIGANYVPTL 240 (291)
T ss_dssp HHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEECGGGHHHHH
T ss_pred ccchHHHHHhcCCCCCCCHHHHHhhhcccccccceeeeccccHHHHH
Confidence 01 13677788999999998877665444444
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.42 E-value=1.3e-13 Score=135.84 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=104.4
Q ss_pred eeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHH
Q 008748 120 NFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFAL 197 (555)
Q Consensus 120 ~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~ 197 (555)
...+.|..|..|.....+.+.+.+... ..++.+|||+|||+|.++..+++. +|+++|+++.++..++ +.++
T Consensus 91 i~i~pg~aFGTG~H~TT~l~l~~l~~~------~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~-~na~ 163 (254)
T d2nxca1 91 LVIEPGMAFGTGHHETTRLALKALARH------LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAE-ANAK 163 (254)
T ss_dssp EECCCC-----CCSHHHHHHHHHHHHH------CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHH-HHHH
T ss_pred EEEccccccCccccchhhHHHHHHHhh------cCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHH-HHHH
Confidence 334445566666655555555554321 123469999999999999888763 7999999999997777 4556
Q ss_pred HcCCCeEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHH
Q 008748 198 ERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDL 277 (555)
Q Consensus 198 ~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l 277 (555)
..+.+..+.++|... .+++++||+|+++. .. .....++.++.++|||||+++++.... ..-+.+.+.
T Consensus 164 ~n~~~~~~~~~d~~~-~~~~~~fD~V~ani-~~---~~l~~l~~~~~~~LkpGG~lilSgil~--------~~~~~v~~~ 230 (254)
T d2nxca1 164 RNGVRPRFLEGSLEA-ALPFGPFDLLVANL-YA---ELHAALAPRYREALVPGGRALLTGILK--------DRAPLVREA 230 (254)
T ss_dssp HTTCCCEEEESCHHH-HGGGCCEEEEEEEC-CH---HHHHHHHHHHHHHEEEEEEEEEEEEEG--------GGHHHHHHH
T ss_pred HcCCceeEEeccccc-cccccccchhhhcc-cc---ccHHHHHHHHHHhcCCCcEEEEEecch--------hhHHHHHHH
Confidence 677888888888654 34567899999764 22 234568899999999999999975321 123467788
Q ss_pred HHhcCcEEEEEee
Q 008748 278 LKSMCWKIVSKKD 290 (555)
Q Consensus 278 ~~~~gw~vv~~~~ 290 (555)
+++.||+++....
T Consensus 231 ~~~~Gf~~~~~~~ 243 (254)
T d2nxca1 231 MAGAGFRPLEEAA 243 (254)
T ss_dssp HHHTTCEEEEEEE
T ss_pred HHHCCCEEEEEEE
Confidence 8999999876554
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.41 E-value=9.8e-14 Score=135.44 Aligned_cols=102 Identities=19% Similarity=0.310 Sum_probs=80.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCC-CCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPY-PSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~-~d~sFDlVv~s~~~ 229 (555)
..+|||||||+|..+..+++. .|+|+|+|+.++..+..+ +.+.+ ..+.+.++|+...++ .+++||+|+|.+ +
T Consensus 25 ~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r-~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~-~ 102 (252)
T d1ri5a_ 25 GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVR-ARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF-S 102 (252)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHH-HHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES-C
T ss_pred cCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHH-HHhcCCCcceEEEEcchhhhcccccccceEEEEcc-e
Confidence 468999999999988888763 588999999888766533 33333 357889999877665 467899999888 5
Q ss_pred cccccc----hHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 230 IDWLQR----DGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 230 l~~~~d----~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
+||..+ ...++.++.|+|||||+|+++.|.
T Consensus 103 l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 103 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 777632 356899999999999999998876
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.40 E-value=4e-13 Score=134.35 Aligned_cols=140 Identities=12% Similarity=0.141 Sum_probs=97.3
Q ss_pred CCCEEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
++.+|||||||.|.++.++++ ..|+|+++|+..+..++... .+.+ ..+.+..+|...++ ++||.|++..+
T Consensus 62 ~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~-~~~g~~~~v~~~~~d~~~~~---~~fD~i~si~~- 136 (285)
T d1kpga_ 62 PGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLV-ANSENLRSKRVLLAGWEQFD---EPVDRIVSIGA- 136 (285)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH-HTCCCCSCEEEEESCGGGCC---CCCSEEEEESC-
T ss_pred CCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHH-HhhhhhhhhHHHHhhhhccc---ccccceeeehh-
Confidence 457999999999999999886 37888888887766555333 3333 35778888887775 67999999884
Q ss_pred ccccc--chHHHHHHHHhhcCCCcEEEEEcC---CC---CCC---Chhh-------HH----------HHHHHHHHHHhc
Q 008748 230 IDWLQ--RDGILLLELDRLLRPGGYFVYSSP---EA---YAH---DPEN-------RR----------IWNAMYDLLKSM 281 (555)
Q Consensus 230 l~~~~--d~~~~L~el~RvLkPGG~lvis~P---~~---~~~---~~e~-------~~----------~~~~l~~l~~~~ 281 (555)
++|+. +...+++++.|+|||||.+++.+- .. ... .... .. ...++..+++..
T Consensus 137 ~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~~~~~~e~a 216 (285)
T d1kpga_ 137 FEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASAN 216 (285)
T ss_dssp GGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTT
T ss_pred hhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhhHHHHHHHh
Confidence 67774 447899999999999999997431 10 000 0000 00 123677788999
Q ss_pred CcEEEEEeeceEEeecCC
Q 008748 282 CWKIVSKKDQTVIWAKPI 299 (555)
Q Consensus 282 gw~vv~~~~~~~iw~KPl 299 (555)
||++...++....+.|++
T Consensus 217 gf~v~~~~~~~~hYarTl 234 (285)
T d1kpga_ 217 GFTVTRVQSLQPHYAKTL 234 (285)
T ss_dssp TCEEEEEEECHHHHHHHH
T ss_pred chhhcccccchhhHHHHH
Confidence 999998877654444443
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.39 E-value=7.1e-13 Score=132.15 Aligned_cols=98 Identities=12% Similarity=0.181 Sum_probs=74.4
Q ss_pred CCCEEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCC--eEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~rg~~--v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
++.+|||||||+|.++.++++ ..|+|+++++.++..+. +.+++.+.. +.+...|...++ ++||.|++.. .
T Consensus 52 ~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~-~~~~~~~l~~~~~~~~~d~~~~~---~~fD~i~si~-~ 126 (280)
T d2fk8a1 52 PGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCE-QVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIE-A 126 (280)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEES-C
T ss_pred CCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHH-HHHHhhccccchhhhhhhhhhhc---cchhhhhHhh-H
Confidence 346999999999999999885 36888888888776555 334444543 455555655543 6899999888 4
Q ss_pred cccccch--HHHHHHHHhhcCCCcEEEEEc
Q 008748 230 IDWLQRD--GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 230 l~~~~d~--~~~L~el~RvLkPGG~lvis~ 257 (555)
++|+.+. ..+++++.++|||||.+++.+
T Consensus 127 ~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 127 FEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp GGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 7777544 789999999999999999854
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=4.2e-13 Score=132.51 Aligned_cols=105 Identities=10% Similarity=0.068 Sum_probs=74.6
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC----------CCccccCChhhhhHHHHHHHHHcC-CCeEE--EEeCCC------CCC
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH----------DIIAMSLAPNDVHENQIQFALERG-IPSTL--GVLGTK------RLP 214 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~----------~V~~vdis~~dls~a~i~~A~~rg-~~v~~--~~~d~~------~Lp 214 (555)
.+..+|||||||+|.++..|+.. .++++|++..++..+..+.+.... ..+.+ ...+++ ..+
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 33447999999999988877642 356777777666555433332222 22333 232222 235
Q ss_pred CCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 215 YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 215 ~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
.++++||+|+|.+ +++|++++..+|+++.++|+|||.++++.+.
T Consensus 119 ~~~~~fD~I~~~~-~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~ 162 (280)
T d1jqea_ 119 KELQKWDFIHMIQ-MLYYVKDIPATLKFFHSLLGTNAKMLIIVVS 162 (280)
T ss_dssp SSCCCEEEEEEES-CGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCCCceeEEEEcc-ceecCCCHHHHHHHHHhhCCCCCEEEEEEec
Confidence 6778999999998 6999999999999999999999999998754
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.38 E-value=4.7e-13 Score=129.85 Aligned_cols=135 Identities=15% Similarity=0.151 Sum_probs=97.6
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC-CCCCCCccEEEeccc
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PYPSRSFELAHCSRC 228 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L-p~~d~sFDlVv~s~~ 228 (555)
.++.+|||+|||+|.++.+|++. .|+|+|+++.++..+. +.+.+ ..++..+..+.... ++.+..+|++++..
T Consensus 73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~-~~a~~-~~ni~~i~~d~~~~~~~~~~~~~v~~i~~- 149 (230)
T d1g8sa_ 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL-DACAE-RENIIPILGDANKPQEYANIVEKVDVIYE- 149 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHH-HHTTT-CTTEEEEECCTTCGGGGTTTCCCEEEEEE-
T ss_pred CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHH-HHHhh-hcccceEEEeeccCcccccccceeEEeec-
Confidence 34569999999999999999863 5889999998886554 33333 34566666665443 35667788776544
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEEEEcCCCCC-CChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-HDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~-~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
.+++..+...++.++.++|||||+++++...... ........+++..+.+++.||++++..+.
T Consensus 150 ~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~idL 213 (230)
T d1g8sa_ 150 DVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDI 213 (230)
T ss_dssp CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred cccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 5777788888999999999999999987533211 11223346778889999999999876653
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.8e-13 Score=132.14 Aligned_cols=147 Identities=15% Similarity=0.111 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEe
Q 008748 132 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVL 208 (555)
Q Consensus 132 a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~ 208 (555)
...+.+.+++.+.. .+.+|||||||+|.++..+++. .++++|+++.++..+. +.+.+.+..+.+...
T Consensus 39 ~~~~~~~la~~~~~---------~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~-~~~~~~~~~~~~~~~ 108 (229)
T d1zx0a1 39 ETPYMHALAAAASS---------KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLR-DWAPRQTHKVIPLKG 108 (229)
T ss_dssp GHHHHHHHHHHHTT---------TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHH-HHGGGCSSEEEEEES
T ss_pred HHHHHHHHHHhhcc---------CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHH-HHhhhcccccccccc
Confidence 34566666666542 2358999999999999999864 6888998888776555 333344455666666
Q ss_pred CCC--CCCCCCCCccEEEe-----cccccccccchHHHHHHHHhhcCCCcEEEEEcCCC-----CCCChhhHHHH-HHHH
Q 008748 209 GTK--RLPYPSRSFELAHC-----SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA-----YAHDPENRRIW-NAMY 275 (555)
Q Consensus 209 d~~--~Lp~~d~sFDlVv~-----s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~-----~~~~~e~~~~~-~~l~ 275 (555)
+.. ..++++++||.|+. .+ .+++..+...+++++.|+|||||+|++..... ..........+ +.+.
T Consensus 109 ~~~~~~~~~~~~~fD~i~fD~~~~~~-~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (229)
T d1zx0a1 109 LWEDVAPTLPDGHFDGILYDTYPLSE-ETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQV 187 (229)
T ss_dssp CHHHHGGGSCTTCEEEEEECCCCCBG-GGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTH
T ss_pred cccccccccccccccceeeccccccc-ccccccCHHHHHHHHHHHcCCCcEEEEEecCCcchhhhhhhhhcchhhhhHHH
Confidence 643 33567889999873 33 46667788889999999999999998853211 00011112222 3455
Q ss_pred HHHHhcCcEEEEEe
Q 008748 276 DLLKSMCWKIVSKK 289 (555)
Q Consensus 276 ~l~~~~gw~vv~~~ 289 (555)
..+.+.||+.....
T Consensus 188 ~~l~~agF~~~~i~ 201 (229)
T d1zx0a1 188 PALLEAGFRRENIR 201 (229)
T ss_dssp HHHHHTTCCGGGEE
T ss_pred HHHHHCCCeeEEEE
Confidence 66778899755443
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.38 E-value=1.3e-12 Score=121.97 Aligned_cols=140 Identities=14% Similarity=0.156 Sum_probs=102.3
Q ss_pred CCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC--
Q 008748 125 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG-- 200 (555)
Q Consensus 125 g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg-- 200 (555)
...+..........+...+.. .+..+|||+|||+|.++..++.. +|+++|+++.++..+..+. ++.+
T Consensus 11 ~~~~~~t~~eir~~il~~l~~--------~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~-~~~gl~ 81 (186)
T d1l3ia_ 11 PSVPGPTAMEVRCLIMCLAEP--------GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNL-QRHGLG 81 (186)
T ss_dssp TTSCCCCCHHHHHHHHHHHCC--------CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHH-HHTTCC
T ss_pred CCCCCCChHHHHHHHHHhcCC--------CCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHH-HHcCCC
Confidence 334444555555666666653 34469999999999999999874 7899999999887777554 4444
Q ss_pred CCeEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHh
Q 008748 201 IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS 280 (555)
Q Consensus 201 ~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~ 280 (555)
.++++.++|+..++++...||+|++... . .+...++.++.+.|||||++++..... +....+.+.++.
T Consensus 82 ~~v~~~~gda~~~~~~~~~~D~v~~~~~-~---~~~~~~~~~~~~~LkpgG~lvi~~~~~--------e~~~~~~~~l~~ 149 (186)
T d1l3ia_ 82 DNVTLMEGDAPEALCKIPDIDIAVVGGS-G---GELQEILRIIKDKLKPGGRIIVTAILL--------ETKFEAMECLRD 149 (186)
T ss_dssp TTEEEEESCHHHHHTTSCCEEEEEESCC-T---TCHHHHHHHHHHTEEEEEEEEEEECBH--------HHHHHHHHHHHH
T ss_pred cceEEEECchhhcccccCCcCEEEEeCc-c---ccchHHHHHHHHHhCcCCEEEEEeecc--------ccHHHHHHHHHH
Confidence 4688999998877777789999998763 2 234678999999999999999875431 223345666777
Q ss_pred cCcEE
Q 008748 281 MCWKI 285 (555)
Q Consensus 281 ~gw~v 285 (555)
.+|..
T Consensus 150 ~~~~~ 154 (186)
T d1l3ia_ 150 LGFDV 154 (186)
T ss_dssp TTCCC
T ss_pred cCCCe
Confidence 78743
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.36 E-value=2e-12 Score=126.26 Aligned_cols=133 Identities=18% Similarity=0.150 Sum_probs=91.3
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCCCCCCCccEEEeccc
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~ 228 (555)
.+.++|||||||+|.++..|+++ .++++|+ +.++..+..+.+... ..++.+..+|+.. +.+ .+||+|+++.
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~-~~~-~~~D~v~~~~- 154 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLP-RKADAIILSF- 154 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-SCEEEEEEES-
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchh-hcc-cchhheeecc-
Confidence 34579999999999999999864 4666776 445555554433322 2458888888644 233 5699999888
Q ss_pred ccccccch--HHHHHHHHhhcCCCcEEEEEcCCCCC--CChhhHH---------------HHHHHHHHHHhcCcEEEEEe
Q 008748 229 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYA--HDPENRR---------------IWNAMYDLLKSMCWKIVSKK 289 (555)
Q Consensus 229 ~l~~~~d~--~~~L~el~RvLkPGG~lvis~P~~~~--~~~e~~~---------------~~~~l~~l~~~~gw~vv~~~ 289 (555)
++|+.++. ..+|++++|+|||||+|+|....... ....... .-+++.+++++.||++++..
T Consensus 155 vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~ 234 (253)
T d1tw3a2 155 VLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVR 234 (253)
T ss_dssp CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred ccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEE
Confidence 57776655 46899999999999999997643211 1111111 12477889999999988655
Q ss_pred e
Q 008748 290 D 290 (555)
Q Consensus 290 ~ 290 (555)
.
T Consensus 235 ~ 235 (253)
T d1tw3a2 235 Q 235 (253)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.34 E-value=6.7e-12 Score=117.70 Aligned_cols=134 Identities=16% Similarity=0.164 Sum_probs=93.0
Q ss_pred CceeeeCCCCCCCCc-cHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHH
Q 008748 116 GEKINFPGGGTHFHD-GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQ 192 (555)
Q Consensus 116 ~e~~~F~~~g~~f~~-~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~ 192 (555)
|..+.|......|.. ..+...+.+.+.+.. .+..+|||+|||+|.++..++.. +|+++|+++.++..+.
T Consensus 20 g~~~~~~t~~gvF~~~~~d~~t~lLi~~l~~--------~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~ 91 (194)
T d1dusa_ 20 GKKLKFKTDSGVFSYGKVDKGTKILVENVVV--------DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAK 91 (194)
T ss_dssp TEEEEEEEETTSTTTTSCCHHHHHHHHHCCC--------CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHH
T ss_pred CeeEEEEcCCCccCCCCcCHHHHHHHHhCCc--------CCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHH
Confidence 445556433333433 223334455555543 33469999999999999999874 7889999988887776
Q ss_pred HHHHHHc--CCCeEEEEeCCCCCCCCCCCccEEEecccccccccc-hHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 193 IQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR-DGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 193 i~~A~~r--g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d-~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
.+..... ...+.+..+|... ++++++||+|+|.. .+++..+ ...++.++.++|+|||.++++...
T Consensus 92 ~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~-p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 159 (194)
T d1dusa_ 92 ENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNP-PIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp HHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECC-CSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred HHHHHhCCccceEEEEEcchhh-hhccCCceEEEEcc-cEEecchhhhhHHHHHHHhcCcCcEEEEEEeC
Confidence 5544332 2357888888765 56678999999876 4555544 367899999999999999886543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=3.2e-13 Score=130.82 Aligned_cols=135 Identities=13% Similarity=0.067 Sum_probs=90.9
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCe----------------------------
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPS---------------------------- 203 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v---------------------------- 203 (555)
++.+|||||||+|.++..++.. .|+|+|+++.++..++.+.. +.....
T Consensus 51 ~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (257)
T d2a14a1 51 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLK-KEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 129 (257)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHH-TCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHh-hccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence 4568999999999988777643 68999999998877664432 211110
Q ss_pred ---EEEEe----CCCCCCCCCCCccEEEeccccccccc----chHHHHHHHHhhcCCCcEEEEEcCCCCCC---Ch----
Q 008748 204 ---TLGVL----GTKRLPYPSRSFELAHCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYAH---DP---- 265 (555)
Q Consensus 204 ---~~~~~----d~~~Lp~~d~sFDlVv~s~~~l~~~~----d~~~~L~el~RvLkPGG~lvis~P~~~~~---~~---- 265 (555)
..... +....++++++||+|++.+ ++||+. +...+++++.|+|||||+|+++++..... ..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~-~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~ 208 (257)
T d2a14a1 130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLL-AMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 208 (257)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEES-CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhcccccccccccccccccCCcccEEeehh-hHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccc
Confidence 11111 1223467789999999888 577763 45678999999999999999987542110 00
Q ss_pred hhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 266 ENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 266 e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
...-..+++.++++++||++++.+..
T Consensus 209 ~~~~~~~~~~~~l~~aGf~v~~~~~~ 234 (257)
T d2a14a1 209 CVALEKGEVEQAVLDAGFDIEQLLHS 234 (257)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 00002357888999999998876443
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.31 E-value=1.1e-12 Score=120.85 Aligned_cols=101 Identities=12% Similarity=-0.019 Sum_probs=74.2
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHc-------------CCCeEEEEeCCCCCC-CCCC
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-------------GIPSTLGVLGTKRLP-YPSR 218 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~r-------------g~~v~~~~~d~~~Lp-~~d~ 218 (555)
++.+|||+|||+|..+.+|+++ .|+|+|+|+.++..+..+ +.+. +....+..+|...++ ....
T Consensus 20 ~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 98 (201)
T d1pjza_ 20 PGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTE-RGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIG 98 (201)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHH-HCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHH
T ss_pred CCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHH-hccccchhhhhhhhhccccccceeccccccccccccc
Confidence 3469999999999999999975 567777766666544322 2111 234567788877776 3456
Q ss_pred CccEEEecccccccccc--hHHHHHHHHhhcCCCcEEEEEc
Q 008748 219 SFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 219 sFDlVv~s~~~l~~~~d--~~~~L~el~RvLkPGG~lvis~ 257 (555)
+||+|+++. ++++..+ ...+++++.++|||||.+++..
T Consensus 99 ~~D~i~~~~-~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 99 HCAAFYDRA-AMIALPADMRERYVQHLEALMPQACSGLLIT 138 (201)
T ss_dssp SEEEEEEES-CGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred ceeEEEEEe-eeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence 899999887 5777654 3669999999999999988765
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.31 E-value=4.5e-12 Score=120.66 Aligned_cols=122 Identities=11% Similarity=0.170 Sum_probs=93.7
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--CCCCCccEEEeccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHCSRCRI 230 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--~~d~sFDlVv~s~~~l 230 (555)
..|||||||+|.++..||.. .++|+|++...+..+..........++.+..+|+..+. ++++++|.|++.+ ..
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f-p~ 109 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF-SD 109 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES-CC
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccc-cc
Confidence 37999999999999999863 68999999998877764444433456899999987775 7889999999776 57
Q ss_pred ccccch--------HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEE
Q 008748 231 DWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 231 ~~~~d~--------~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~ 287 (555)
+|.... ..++.++.|+|||||.|.|.+-. ...++.+.+.+.+.++....
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~--------~~y~~~~~~~~~~~~~~~~~ 166 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN--------RGLFEYSLKSFSEYGLLLTY 166 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC--------HHHHHHHHHHHHHHTCEEEE
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECC--------hHHHHHHHHHHHHCCCcccc
Confidence 766443 36999999999999999996521 23455677777777775543
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.29 E-value=6.1e-13 Score=132.44 Aligned_cols=117 Identities=18% Similarity=0.273 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCC-----eEE
Q 008748 133 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIP-----STL 205 (555)
Q Consensus 133 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~-----v~~ 205 (555)
..+.+.+.+.+.. .+..+|||||||+|.++..|+++ .|+|+|+|+.++..+..+.. +++.. ..+
T Consensus 42 ~~~~~~l~~~l~~--------~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~-~~~~~~~~~~~~~ 112 (292)
T d1xvaa_ 42 AEYKAWLLGLLRQ--------HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERW-NRRKEPAFDKWVI 112 (292)
T ss_dssp HHHHHHHHHHHHH--------TTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-HTTTSHHHHTCEE
T ss_pred HHHHHHHHHHhhh--------cCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHH-hcccccccceeee
Confidence 3344555555543 22358999999999999999975 78899998888877664333 22222 234
Q ss_pred EEeCCC----CCCCCCCCccEEEecccccccccc-------hHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 206 GVLGTK----RLPYPSRSFELAHCSRCRIDWLQR-------DGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 206 ~~~d~~----~Lp~~d~sFDlVv~s~~~l~~~~d-------~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
..++.. .+|. .++||+|+|...+++|+.+ ...+|+++.|+|||||+|++...+
T Consensus 113 ~~~~~~~~~~~~~~-~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 176 (292)
T d1xvaa_ 113 EEANWLTLDKDVPA-GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 176 (292)
T ss_dssp EECCGGGHHHHSCC-TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eeccccccccccCC-CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence 444432 2333 3689999998777888754 356999999999999999997643
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.28 E-value=3.2e-12 Score=122.05 Aligned_cols=134 Identities=15% Similarity=0.067 Sum_probs=92.7
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
++.+|||+|||+|..+.+|++. .|+|+|+++.++..+. +.+.++ .++.+...|....+.....+|.|.+.+..+
T Consensus 56 pg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~-~~a~~~-~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~ 133 (209)
T d1nt2a_ 56 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL-ELVRER-NNIIPLLFDASKPWKYSGIVEKVDLIYQDI 133 (209)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHH-HHHHHC-SSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHH-HHhhcc-CCceEEEeeccCccccccccceEEEEEecc
Confidence 3469999999999999988862 5999999999987665 445444 478888888777665555555554433345
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEcCCC-CCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSSPEA-YAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~P~~-~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
.+..+...++.++.++|||||+++++.... .....+....++...+.++ .||++++..+.
T Consensus 134 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~-~gf~i~E~i~L 194 (209)
T d1nt2a_ 134 AQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEME-GDFKIVKHGSL 194 (209)
T ss_dssp CSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHH-TTSEEEEEEEC
T ss_pred cChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHH-cCCEEEEEEcc
Confidence 566677889999999999999999875221 0011122334555555554 59998876543
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.22 E-value=6.1e-11 Score=112.66 Aligned_cols=122 Identities=11% Similarity=0.132 Sum_probs=91.8
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--CCCCCccEEEeccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHCSRCRI 230 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--~~d~sFDlVv~s~~~l 230 (555)
..|||||||+|.++..+|.. .++|+|++...+..+..+.....-.++.+..+|+..+. ++++++|.|++.+ ..
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f-Pd 111 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF-SD 111 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES-CC
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc-cc
Confidence 47999999999999999863 68899999988877764444444457899999987775 7889999999776 46
Q ss_pred ccccch--------HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEE
Q 008748 231 DWLQRD--------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 231 ~~~~d~--------~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~ 287 (555)
+|.... ..+|.++.|+|||||.|.+.+-. ...++.+...+...++....
T Consensus 112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~--------~~Y~~~~le~~~~~~~~~~~ 168 (204)
T d1yzha1 112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN--------RGLFEYSLVSFSQYGMKLNG 168 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC--------HHHHHHHHHHHHHHTCEEEE
T ss_pred cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECC--------ccHHHHHHHHHHHCCccccc
Confidence 665432 46899999999999999986522 12344555666777776543
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.21 E-value=1.8e-11 Score=120.76 Aligned_cols=119 Identities=18% Similarity=0.165 Sum_probs=91.5
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHc---CCCeEEEEeCCCCCCCCCCCccEEEec
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCS 226 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~r---g~~v~~~~~d~~~Lp~~d~sFDlVv~s 226 (555)
++.+|||+|||+|+++..|+.. .|+++|+++..+..+..++..-. ..++.+.+.|....++++++||.|++
T Consensus 96 PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~l- 174 (264)
T d1i9ga_ 96 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL- 174 (264)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE-
T ss_pred CCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEEE-
Confidence 3469999999999999999853 68899999888877665543322 34688999999888999999999984
Q ss_pred ccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 227 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 227 ~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
.++++..++.++.++|||||.+++..|.. .+..+.++.+..+.+|..+
T Consensus 175 -----dlp~P~~~l~~~~~~LkpGG~lv~~~P~i-------~Qv~~~~~~l~~~~~f~~i 222 (264)
T d1i9ga_ 175 -----DMLAPWEVLDAVSRLLVAGGVLMVYVATV-------TQLSRIVEALRAKQCWTEP 222 (264)
T ss_dssp -----ESSCGGGGHHHHHHHEEEEEEEEEEESSH-------HHHHHHHHHHHHHSSBCCC
T ss_pred -----ecCCHHHHHHHHHhccCCCCEEEEEeCcc-------ChHHHHHHHHHHcCCeecc
Confidence 25677789999999999999999988874 1333444445456678543
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1.5e-11 Score=118.00 Aligned_cols=116 Identities=13% Similarity=0.047 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHH-------------
Q 008748 133 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFAL------------- 197 (555)
Q Consensus 133 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~------------- 197 (555)
..+.+.+.+.+.. .+..+|||+|||+|..+.+|++. .|+|+|+|+.++..+..+...
T Consensus 31 ~~l~~~~~~~l~~--------~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~ 102 (229)
T d2bzga1 31 QLLKKHLDTFLKG--------KSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGT 102 (229)
T ss_dssp HHHHHHHHHHHTT--------CCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTC
T ss_pred HHHHHHHHHhcCC--------CCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhccccc
Confidence 3344555555543 23469999999999999999985 678888887776544422211
Q ss_pred ----HcCCCeEEEEeCCCCCC-CCCCCccEEEeccccccccc--chHHHHHHHHhhcCCCcEEEEEc
Q 008748 198 ----ERGIPSTLGVLGTKRLP-YPSRSFELAHCSRCRIDWLQ--RDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 198 ----~rg~~v~~~~~d~~~Lp-~~d~sFDlVv~s~~~l~~~~--d~~~~L~el~RvLkPGG~lvis~ 257 (555)
..+..+.+.++|...++ ...+.||+|+...+ +++.. +...++.++.++|||||++++..
T Consensus 103 ~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~-l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~ 168 (229)
T d2bzga1 103 KVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGA-LVAINPGDRKCYADTMFSLLGKKFQYLLCV 168 (229)
T ss_dssp EEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSS-TTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceeeecCCcEEEEEcchhhccccccCceeEEEEEEE-EEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence 01346788888877764 56689999998774 56553 33669999999999999988765
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.19 E-value=4.4e-11 Score=117.18 Aligned_cols=132 Identities=20% Similarity=0.201 Sum_probs=89.3
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEecc
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSR 227 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~ 227 (555)
+..++|||||||+|.++..|+++ .++++|+ +..+..+....+ +.+ ..+.+..+|... +.+ .+||+|++.+
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~-~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~ 155 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFA-DAGLADRVTVAEGDFFK-PLP-VTADVVLLSF 155 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH-HTTCTTTEEEEECCTTS-CCS-CCEEEEEEES
T ss_pred ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHh-hcCCcceeeeeeeeccc-ccc-ccchhhhccc
Confidence 34579999999999999999974 5677786 444444443333 333 346777777543 444 4599999988
Q ss_pred cccccccch--HHHHHHHHhhcCCCcEEEEEcCCCC---CCChhhHH---------------HHHHHHHHHHhcCcEEEE
Q 008748 228 CRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAY---AHDPENRR---------------IWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 228 ~~l~~~~d~--~~~L~el~RvLkPGG~lvis~P~~~---~~~~e~~~---------------~~~~l~~l~~~~gw~vv~ 287 (555)
++|+.++. ..+|++++++|||||.|+|..+... ........ ..+++.++++++||++++
T Consensus 156 -vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~ 234 (256)
T d1qzza2 156 -VLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALAS 234 (256)
T ss_dssp -CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEE
T ss_pred -cccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeE
Confidence 56666554 4579999999999999999764311 11111110 124788999999999887
Q ss_pred Eee
Q 008748 288 KKD 290 (555)
Q Consensus 288 ~~~ 290 (555)
...
T Consensus 235 ~~~ 237 (256)
T d1qzza2 235 ERT 237 (256)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=4e-12 Score=125.04 Aligned_cols=135 Identities=13% Similarity=0.088 Sum_probs=87.9
Q ss_pred CCCEEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC------------------------------
Q 008748 155 NIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI------------------------------ 201 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~rg~------------------------------ 201 (555)
++.+|||||||+|.++..++. .+|+++|+++.++..++.......+.
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 133 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhh
Confidence 457999999999987765553 26899999998886665322111000
Q ss_pred CeEEEEeCCC------CCCCCCCCccEEEeccccccccc----chHHHHHHHHhhcCCCcEEEEEcCCCCCCC---h---
Q 008748 202 PSTLGVLGTK------RLPYPSRSFELAHCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAYAHD---P--- 265 (555)
Q Consensus 202 ~v~~~~~d~~------~Lp~~d~sFDlVv~s~~~l~~~~----d~~~~L~el~RvLkPGG~lvis~P~~~~~~---~--- 265 (555)
.......|+. ..+++.++||+|++++ ++|++. +...+++++.++|||||+|++..+...... .
T Consensus 134 ~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~-~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~ 212 (263)
T d2g72a1 134 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAF-CLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL 212 (263)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEES-CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred hhccccccccCCCccccCCcCcCccCeeeeHH-HHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCccc
Confidence 0122334432 2234567899999998 477763 446789999999999999999764321100 0
Q ss_pred -hhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 266 -ENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 266 -e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
...-..+++.+++++.||+++..+.
T Consensus 213 ~~~~~t~e~v~~~l~~aGf~v~~~~~ 238 (263)
T d2g72a1 213 TVVPVSEEEVREALVRSGYKVRDLRT 238 (263)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ccCCCCHHHHHHHHHHCCCeEEEEEE
Confidence 0001235788999999999886544
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.15 E-value=3.8e-11 Score=117.60 Aligned_cols=118 Identities=8% Similarity=0.111 Sum_probs=89.2
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCCCCCCCccEEEeccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCSRC 228 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~ 228 (555)
++.+|||+|||+|.++..|+.. .|+++|+++..+..+..++.+.. ..++.+...|..+. +++++||+|++.
T Consensus 85 pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~ld-- 161 (250)
T d1yb2a1 85 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVIAD-- 161 (250)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEEEC--
T ss_pred CcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeeeec--
Confidence 3469999999999999998852 68899998887766665544322 34678888888765 456889999853
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEE
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~ 287 (555)
++++..++.++.++|||||+|++..|.. +...++.+.+++.||..++
T Consensus 162 ----~p~p~~~l~~~~~~LKpGG~lv~~~P~i--------~Qv~~~~~~l~~~gf~~i~ 208 (250)
T d1yb2a1 162 ----IPDPWNHVQKIASMMKPGSVATFYLPNF--------DQSEKTVLSLSASGMHHLE 208 (250)
T ss_dssp ----CSCGGGSHHHHHHTEEEEEEEEEEESSH--------HHHHHHHHHSGGGTEEEEE
T ss_pred ----CCchHHHHHHHHHhcCCCceEEEEeCCc--------ChHHHHHHHHHHCCCceeE
Confidence 3556678999999999999999988863 3344555667778997654
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.14 E-value=3.8e-11 Score=114.67 Aligned_cols=109 Identities=8% Similarity=0.004 Sum_probs=81.4
Q ss_pred HHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEe
Q 008748 134 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVL 208 (555)
Q Consensus 134 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~ 208 (555)
.....+.+.+.. .++.+|||||||+|+++..|++. .|+++|+++..+..+..+.......++.+.++
T Consensus 62 ~~~a~~l~~l~l--------~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~ 133 (213)
T d1dl5a1 62 SLMALFMEWVGL--------DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCG 133 (213)
T ss_dssp HHHHHHHHHTTC--------CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred hhhHHHHHhhhc--------cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccC
Confidence 344445555553 33469999999999999988752 58899999988877775555444456788888
Q ss_pred CCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 209 GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 209 d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
|....++.+++||+|++.. ++++++ .++.+.|||||++++..
T Consensus 134 d~~~~~~~~~~fD~I~~~~-~~~~~p------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 134 DGYYGVPEFSPYDVIFVTV-GVDEVP------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp CGGGCCGGGCCEEEEEECS-BBSCCC------HHHHHHEEEEEEEEEEB
T ss_pred chHHccccccchhhhhhhc-cHHHhH------HHHHHhcCCCcEEEEEE
Confidence 8877777778999999887 466543 35678899999999854
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.07 E-value=2.4e-10 Score=112.78 Aligned_cols=118 Identities=13% Similarity=0.141 Sum_probs=87.4
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSR 227 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~ 227 (555)
++.+|||+|||+|.++..|+.. .|+++|+++.++..+..++. ..+. .+.+...|.. ..+....||.|+.
T Consensus 103 pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~-~~g~~~~v~~~~~d~~-~~~~~~~~D~V~~-- 178 (266)
T d1o54a_ 103 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLT-KWGLIERVTIKVRDIS-EGFDEKDVDALFL-- 178 (266)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHH-HTTCGGGEEEECCCGG-GCCSCCSEEEEEE--
T ss_pred CCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-HhccccCcEEEecccc-ccccccceeeeEe--
Confidence 3469999999999999999852 68899999988877775543 3343 3555555643 2355677998873
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEE
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 288 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~ 288 (555)
.++++..++.++.++|||||.+++..|.. +...++.+.+++.||..++.
T Consensus 179 ----d~p~p~~~l~~~~~~LKpGG~lv~~~P~~--------~Qv~~~~~~l~~~gF~~i~~ 227 (266)
T d1o54a_ 179 ----DVPDPWNYIDKCWEALKGGGRFATVCPTT--------NQVQETLKKLQELPFIRIEV 227 (266)
T ss_dssp ----CCSCGGGTHHHHHHHEEEEEEEEEEESSH--------HHHHHHHHHHHHSSEEEEEE
T ss_pred ----cCCCHHHHHHHHHhhcCCCCEEEEEeCcc--------cHHHHHHHHHHHCCceeEEE
Confidence 35677889999999999999999988763 34456667778889976543
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=2.3e-10 Score=114.76 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=73.0
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHc--CCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~r--g~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
.++|||||||+|.++..++++ .|+++|.++.+.. ++ +.+.+. ...+.+..+++.++++++++||+|+|.. ..
T Consensus 36 ~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~-~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~-~~ 112 (311)
T d2fyta1 36 DKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AM-DIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEW-MG 112 (311)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HH-HHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECC-CB
T ss_pred cCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HH-HHHHHhCCCccceEEEeeHHHhcCccccceEEEEee-ee
Confidence 468999999999999988864 6899999987653 33 222333 3468899999999999989999999754 33
Q ss_pred cccc---chHHHHHHHHhhcCCCcEEE
Q 008748 231 DWLQ---RDGILLLELDRLLRPGGYFV 254 (555)
Q Consensus 231 ~~~~---d~~~~L~el~RvLkPGG~lv 254 (555)
++.. ....++....++|||||.++
T Consensus 113 ~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 113 YFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp TTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred eecccccccHHHHHHHHhcCCCCcEEe
Confidence 3332 23567788889999999987
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=9.1e-11 Score=119.08 Aligned_cols=123 Identities=12% Similarity=0.047 Sum_probs=88.9
Q ss_pred CCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHH--H
Q 008748 125 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFAL--E 198 (555)
Q Consensus 125 g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~--~ 198 (555)
...|........+.+.+.+.+ .+..+|||||||+|.++..++. ..++|+|+++.++..+..+... .
T Consensus 129 ~~~~~e~~~~~~~~~~~~~~l--------~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~ 200 (328)
T d1nw3a_ 129 PEVYGETSFDLVAQMIDEIKM--------TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRK 200 (328)
T ss_dssp TTCCCCCCHHHHHHHHHHSCC--------CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHH
T ss_pred CCchhhhHHHHHHHHHHHcCC--------CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 334555555566666666654 2346899999999999988774 2588999999887665433221 1
Q ss_pred -------cCCCeEEEEeCCCCCCCCCCCc--cEEEecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 199 -------RGIPSTLGVLGTKRLPYPSRSF--ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 199 -------rg~~v~~~~~d~~~Lp~~d~sF--DlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
+..++.+.++|+..+++.+..| |+|+++. +.|.++....|.++.|+|||||.++...
T Consensus 201 ~~~~~g~~~~~i~~~~gd~~~~~~~~~~~~advi~~~~--~~f~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 201 WMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNN--FAFGPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp HHHHHTCCCCCEEEEECCTTSHHHHHHHHHCSEEEECC--TTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred HhhhccccCCceEEEECcccccccccccCcceEEEEcc--eecchHHHHHHHHHHHhCCCCcEEEEec
Confidence 2346899999999988876655 5566543 5567788889999999999999998754
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.01 E-value=2.5e-10 Score=115.41 Aligned_cols=97 Identities=19% Similarity=0.258 Sum_probs=73.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEeccc--
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRC-- 228 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~-- 228 (555)
..+|||||||+|.++..++++ .|+++|.++. +..+. +.+++.+ ..+.+..++...+++++++||+|++...
T Consensus 39 ~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~-~~~a~-~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSI-IEMAK-ELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTH-HHHHH-HHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHH-HHHHH-HHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 368999999999999988864 6889998863 33333 3344443 3578899999999999999999997542
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEE
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFV 254 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lv 254 (555)
.+.+......++..+.|+|||||.++
T Consensus 117 ~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeccchhHHHHHHHHHhccCCCeEEE
Confidence 23333455778999999999999986
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.98 E-value=1e-09 Score=105.70 Aligned_cols=131 Identities=13% Similarity=0.150 Sum_probs=89.2
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCC---CCCCCCCCccEEEe
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK---RLPYPSRSFELAHC 225 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~---~Lp~~d~sFDlVv~ 225 (555)
.++.+|||+|||+|.++.+|++. .|+++|+++.++..+. +.+..+ ..+.....|.. .++.....+|+|++
T Consensus 72 ~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~-~~a~~~-~~~~~i~~d~~~~~~~~~~~~~vD~i~~ 149 (227)
T d1g8aa_ 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-PIVEER-RNIVPILGDATKPEEYRALVPKVDVIFE 149 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHSSC-TTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHH-HHHHhc-CCceEEEEECCCcccccccccceEEEEE
Confidence 34579999999999999999862 6899999998886655 334333 35556666653 33344467888875
Q ss_pred cccccccccchHHHHHHHHhhcCCCcEEEEEcCCCC-CCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 226 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAY-AHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 226 s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~-~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
. +.+..+...++.++.++|||||+++++..... .........+.+++.++ +.||++++..+
T Consensus 150 d---~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~-~~gf~iie~i~ 211 (227)
T d1g8aa_ 150 D---VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEYFEVIERLN 211 (227)
T ss_dssp C---CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTTSEEEEEEE
T ss_pred E---ccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHH-HcCCEEEEEEc
Confidence 3 44556667899999999999999998753221 11122233455666655 45999886544
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.98 E-value=4.2e-10 Score=113.26 Aligned_cols=96 Identities=16% Similarity=0.147 Sum_probs=73.9
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
.++|||||||+|.++..++++ .|+++|.++... .+. +.+...+ ..+.+..+++.+++++.++||+|++.. ..
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~-~a~-~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~-~~ 110 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISD-YAV-KIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEW-MG 110 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHH-HHH-HHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECC-CB
T ss_pred cCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHh-hhh-hHHHHhCCccccceEeccHHHcccccceeEEEeeee-ee
Confidence 368999999999999888864 588999987542 332 3344443 358899999999999989999999754 33
Q ss_pred ccc---cchHHHHHHHHhhcCCCcEEE
Q 008748 231 DWL---QRDGILLLELDRLLRPGGYFV 254 (555)
Q Consensus 231 ~~~---~d~~~~L~el~RvLkPGG~lv 254 (555)
++. .....++..+.|+|||||.++
T Consensus 111 ~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 111 YCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 333 345778999999999999987
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=6e-10 Score=107.04 Aligned_cols=97 Identities=16% Similarity=0.165 Sum_probs=74.7
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHc-----CCCeEEEEeCCCCCCCCCCCccEEE
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAH 224 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~r-----g~~v~~~~~d~~~Lp~~d~sFDlVv 224 (555)
++.+|||||||+|+++..|++. .|+++|+++..+..+..++.+.. ...+.+..+|....+.+++.||.|+
T Consensus 76 ~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I~ 155 (224)
T d1i1na_ 76 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIH 155 (224)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhhh
Confidence 3468999999999998888752 68999999988877765544322 2467888899888777788999999
Q ss_pred ecccccccccchHHHHHHHHhhcCCCcEEEEEcC
Q 008748 225 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 225 ~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P 258 (555)
+.. ++++.+ .++.+.|||||++++...
T Consensus 156 ~~~-~~~~ip------~~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 156 VGA-AAPVVP------QALIDQLKPGGRLILPVG 182 (224)
T ss_dssp ECS-BBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred hhc-chhhcC------HHHHhhcCCCcEEEEEEc
Confidence 876 455543 457889999999998553
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=2.1e-09 Score=108.77 Aligned_cols=100 Identities=13% Similarity=0.120 Sum_probs=74.1
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHc-----------CCCeEEEEeCCCCCC--CC
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER-----------GIPSTLGVLGTKRLP--YP 216 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~r-----------g~~v~~~~~d~~~Lp--~~ 216 (555)
++.+|||+|||+|+++..|+.. .|+++|+++..+..++.++.... ..++.+...|+.... ++
T Consensus 98 pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~ 177 (324)
T d2b25a1 98 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK 177 (324)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred CCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccccC
Confidence 3469999999999999999862 68999999988877765554321 235788888876654 45
Q ss_pred CCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 217 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 217 d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
+..||.|+. . ++++..++.++.++|||||.|++..|..
T Consensus 178 ~~~fD~V~L-D-----~p~P~~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 178 SLTFDAVAL-D-----MLNPHVTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp ---EEEEEE-C-----SSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred CCCcceEee-c-----CcCHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 678999984 1 3456678999999999999999988874
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=2.4e-09 Score=105.82 Aligned_cols=121 Identities=17% Similarity=0.146 Sum_probs=87.3
Q ss_pred CCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
..+|||+|||+|.++..++. ..|+++|+++..+..++.+ +...+. ++.+...|... ++++++||+|+|+--.+
T Consensus 109 ~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~N-a~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 109 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRN-AQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHH-HHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCCB
T ss_pred ccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHH-HHHhCcccceeeeccccc-ccCCCceeEEEecchhh
Confidence 46899999999999998875 3789999999988877754 444454 58888888643 34567899999863211
Q ss_pred ------------cccc------------chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 231 ------------DWLQ------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 231 ------------~~~~------------d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
.|.+ ....++.++.+.|+|||.+++-.... ..+.+.+++++.||..+
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~---------q~~~v~~~l~~~gf~~i 257 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ---------QGEAVRQAFILAGYHDV 257 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS---------CHHHHHHHHHHTTCTTC
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECch---------HHHHHHHHHHHCCCCeE
Confidence 1111 11347889999999999999965331 13567888999999644
Q ss_pred E
Q 008748 287 S 287 (555)
Q Consensus 287 ~ 287 (555)
+
T Consensus 258 ~ 258 (274)
T d2b3ta1 258 E 258 (274)
T ss_dssp C
T ss_pred E
Confidence 3
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.80 E-value=4e-09 Score=101.26 Aligned_cols=94 Identities=11% Similarity=0.100 Sum_probs=69.4
Q ss_pred CCCEEEEECCCCcHHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~--~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
+..+|||||||+|++++.|+. ..|+++|+++..+..++... ....++.+..+|........++||.|++.. ++++
T Consensus 70 ~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~--~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~-a~~~ 146 (224)
T d1vbfa_ 70 KGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLL--SYYNNIKLILGDGTLGYEEEKPYDRVVVWA-TAPT 146 (224)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHH--TTCSSEEEEESCGGGCCGGGCCEEEEEESS-BBSS
T ss_pred ccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHH--hcccccccccCchhhcchhhhhHHHHHhhc-chhh
Confidence 346899999999999998886 36888998887766554332 235678888888655444557899999876 4554
Q ss_pred ccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 233 LQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 233 ~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
++ ..+.+.|+|||++++..
T Consensus 147 ip------~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 147 LL------CKPYEQLKEGGIMILPI 165 (224)
T ss_dssp CC------HHHHHTEEEEEEEEEEE
T ss_pred hh------HHHHHhcCCCCEEEEEE
Confidence 43 34667899999999843
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.74 E-value=5.4e-09 Score=108.61 Aligned_cols=122 Identities=6% Similarity=-0.004 Sum_probs=81.9
Q ss_pred CCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHc--
Q 008748 126 THFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-- 199 (555)
Q Consensus 126 ~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~r-- 199 (555)
..|......++..+.+.+.+ .+..+|||||||+|.++..++.. .++|+|+++.++..+..+.....
T Consensus 195 ~vYGEl~~~~i~~Il~~l~L--------kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~ 266 (406)
T d1u2za_ 195 YVYGELLPNFLSDVYQQCQL--------KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKR 266 (406)
T ss_dssp GCCCCBCHHHHHHHHHHTTC--------CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHhCC--------CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 34556666677777777654 33468999999999999888752 58999999988877764433211
Q ss_pred ----C---CCeEE-EEeCCCCCCCCC---CCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 200 ----G---IPSTL-GVLGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 200 ----g---~~v~~-~~~d~~~Lp~~d---~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
+ ....+ ..++....++.+ ..+|+|++.. +.|.++....|.++.|+|||||.++.+.
T Consensus 267 ~~~~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn--~~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 267 CKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNN--FLFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp HHHTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECC--TTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred hhhhccccccceeeeeechhhccccccccccceEEEEec--ccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 1 12233 223332222111 2467887654 5567788889999999999999998765
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.74 E-value=2.7e-08 Score=97.36 Aligned_cols=157 Identities=13% Similarity=0.128 Sum_probs=102.6
Q ss_pred cCceeeeCCCCCCCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc---CCCccccCChhhhhHH
Q 008748 115 NGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHEN 191 (555)
Q Consensus 115 ~~e~~~F~~~g~~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a 191 (555)
.|-.+.+.-..+.|..........+.+.+. ++.+|||+|||+|.++..++. ..|+++|+++..+..+
T Consensus 77 ~g~~~~~d~~~~~f~~~~~~er~ri~~~~~----------~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~ 146 (260)
T d2frna1 77 NGIKYKLDVAKIMFSPANVKERVRMAKVAK----------PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFL 146 (260)
T ss_dssp TTEEEEEETTTSCCCGGGHHHHHHHHHHCC----------TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHH
T ss_pred cCeeEEeccccccEecCCHHHHHHHHhhcC----------CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHH
Confidence 344555554555666665544555555543 246899999999999998885 3689999999888666
Q ss_pred HHHHHHHcCC--CeEEEEeCCCCCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHH
Q 008748 192 QIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRR 269 (555)
Q Consensus 192 ~i~~A~~rg~--~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~ 269 (555)
..+... .+. .+.+..+|+..++. .+.||.|++.. .+ ....++.++.++|++||++.+..-..-... ...
T Consensus 147 ~~N~~~-n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~--p~---~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~--~~~ 217 (260)
T d2frna1 147 VENIHL-NKVEDRMSAYNMDNRDFPG-ENIADRILMGY--VV---RTHEFIPKALSIAKDGAIIHYHNTVPEKLM--PRE 217 (260)
T ss_dssp HHHHHH-TTCTTTEEEECSCTTTCCC-CSCEEEEEECC--CS---SGGGGHHHHHHHEEEEEEEEEEEEEEGGGT--TTT
T ss_pred HHHHHH-hCCCceEEEEEcchHHhcc-CCCCCEEEECC--CC---chHHHHHHHHhhcCCCCEEEEEeccccccc--hhh
Confidence 644433 343 47888899887764 47899998643 22 234578899999999999865321100000 001
Q ss_pred HHHHHHHHHHhcCcEEEEEee
Q 008748 270 IWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 270 ~~~~l~~l~~~~gw~vv~~~~ 290 (555)
..+.+.++++..|+++.....
T Consensus 218 ~~e~~~~~~~~~g~~v~~~~~ 238 (260)
T d2frna1 218 PFETFKRITKEYGYDVEKLNE 238 (260)
T ss_dssp THHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHcCCceEEEEE
Confidence 234566788889998754443
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.62 E-value=3.8e-08 Score=93.76 Aligned_cols=108 Identities=13% Similarity=0.134 Sum_probs=76.8
Q ss_pred HHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCC
Q 008748 135 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK 211 (555)
Q Consensus 135 y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~ 211 (555)
....+.+.+... +..+|||||||+|+.++.|+. ..|+++|..+..+..+..+.......++.+..+|..
T Consensus 66 ~~a~ml~~L~l~--------~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~ 137 (215)
T d1jg1a_ 66 MVAIMLEIANLK--------PGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS 137 (215)
T ss_dssp HHHHHHHHHTCC--------TTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG
T ss_pred hHHHHHHhhccC--------ccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccc
Confidence 334455555542 345899999999999988875 368899998876666664444433467899999976
Q ss_pred CCCCCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 212 RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 212 ~Lp~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
......+.||.|++.. +++..++ .+...|+|||++++..
T Consensus 138 ~g~~~~~pfD~Iiv~~-a~~~ip~------~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 138 KGFPPKAPYDVIIVTA-GAPKIPE------PLIEQLKIGGKLIIPV 176 (215)
T ss_dssp GCCGGGCCEEEEEECS-BBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred cCCcccCcceeEEeec-ccccCCH------HHHHhcCCCCEEEEEE
Confidence 6555568899999776 4554432 2456799999999854
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.62 E-value=1.9e-08 Score=101.20 Aligned_cols=126 Identities=13% Similarity=0.051 Sum_probs=84.3
Q ss_pred CCEEEEECCCCcHHHHHHhc--CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC----CCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR----LPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~--~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~----Lp~~d~sFDlVv~s~~~ 229 (555)
+++|||++||+|.++.+++. +.|+++|+++..+..+..+.....-.++.+..+|..+ ++...++||+|++.--.
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~ 225 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPA 225 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred CCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCCc
Confidence 46999999999999998875 3799999999998877755544333467888888543 34455789999974211
Q ss_pred cc--------cccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcE
Q 008748 230 ID--------WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 284 (555)
Q Consensus 230 l~--------~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~ 284 (555)
+. ...+...++..+.++|+|||.+++++-... ... ....+.+.+.+...+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~-~~~--~~f~~~v~~a~~~a~~~ 285 (318)
T d1wxxa2 226 FAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH-MTE--PLFYAMVAEAAQDAHRL 285 (318)
T ss_dssp SCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT-SCH--HHHHHHHHHHHHHTTCC
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-cCH--HHHHHHHHHHHHHcCCC
Confidence 11 112224578899999999999999775431 111 12223344555666643
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.58 E-value=3.6e-08 Score=94.35 Aligned_cols=96 Identities=16% Similarity=0.142 Sum_probs=70.2
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----------CCccccCChhhhhHHHHHHHH-----HcCCCeEEEEeCCCCCCCCCCC
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----------DIIAMSLAPNDVHENQIQFAL-----ERGIPSTLGVLGTKRLPYPSRS 219 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----------~V~~vdis~~dls~a~i~~A~-----~rg~~v~~~~~d~~~Lp~~d~s 219 (555)
+..+|||||||+|++++.|++. +|+++|+.+..+..+..+... ....++.+..+|......+.+.
T Consensus 80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~~ 159 (223)
T d1r18a_ 80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAP 159 (223)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCS
T ss_pred CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccccc
Confidence 3469999999999999888752 478888888766655543221 1234788899997776666688
Q ss_pred ccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 220 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 220 FDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
||.|++.. +++..+ ..+.+.|||||++++..
T Consensus 160 fD~Iiv~~-a~~~~p------~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 160 YNAIHVGA-AAPDTP------TELINQLASGGRLIVPV 190 (223)
T ss_dssp EEEEEECS-CBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred eeeEEEEe-echhch------HHHHHhcCCCcEEEEEE
Confidence 99999876 455433 34678999999999854
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.49 E-value=1e-07 Score=88.93 Aligned_cols=102 Identities=12% Similarity=0.186 Sum_probs=63.2
Q ss_pred CCCEEEEECCCCcH----HHHHHhcC--------CCccccCChhhhhHHHHHH------------HHHc-----C-----
Q 008748 155 NIRNVLDVGCGVAS----FGAYLLSH--------DIIAMSLAPNDVHENQIQF------------ALER-----G----- 200 (555)
Q Consensus 155 ~~~~VLDIGCGtG~----~a~~La~~--------~V~~vdis~~dls~a~i~~------------A~~r-----g----- 200 (555)
+.-+|+++|||+|. ++..+.+. .|+|+|++...+..+..-. ...+ +
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 34689999999994 44444431 3667777666654443100 0000 0
Q ss_pred ---------CCeEEEEeCCCC-CCCCCCCccEEEecccccccccch--HHHHHHHHhhcCCCcEEEEEc
Q 008748 201 ---------IPSTLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 201 ---------~~v~~~~~d~~~-Lp~~d~sFDlVv~s~~~l~~~~d~--~~~L~el~RvLkPGG~lvis~ 257 (555)
..+.+...+... .+.+.+.||+|+|.+ ++.|.++. .++++.+++.|+|||+|++..
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRN-VLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~ 171 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRN-VMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 171 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECS-SGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeeh-hHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 012233333322 233457899999999 56676655 569999999999999998854
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.49 E-value=1.1e-07 Score=95.76 Aligned_cols=104 Identities=16% Similarity=0.109 Sum_probs=74.4
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCC----CCCCCCCccEEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR----LPYPSRSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~----Lp~~d~sFDlVv~s 226 (555)
..+|||+|||+|.++..++.. .|+++|+++..+..+..+.. ..+. ++.+.++|+.. ++...++||+|++.
T Consensus 146 g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~-~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~D 224 (324)
T d2as0a2 146 GDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAK-LNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 224 (324)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH-HTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHH-HcCCCccceeeechhhhhhHHHHhccCCCCchhcC
Confidence 468999999999999988753 68999999988877765543 4444 46788888533 33455789999974
Q ss_pred cccccc--------ccchHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 227 RCRIDW--------LQRDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 227 ~~~l~~--------~~d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
--.+.- ..+...++..+.++|+|||+|++++...
T Consensus 225 pP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 225 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 311110 0122447888999999999999987553
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.41 E-value=3.4e-07 Score=88.53 Aligned_cols=124 Identities=16% Similarity=0.064 Sum_probs=81.8
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
...++|||||||+|.++..++++ +++..|+.. .++.+ ....++.+..+|..+ +.| ..|++++++.
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~------vi~~~-~~~~ri~~~~gd~~~-~~p--~~D~~~l~~v- 148 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ------VIENA-PPLSGIEHVGGDMFA-SVP--QGDAMILKAV- 148 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH------HHTTC-CCCTTEEEEECCTTT-CCC--CEEEEEEESS-
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh------hhhcc-CCCCCeEEecCCccc-ccc--cceEEEEehh-
Confidence 44579999999999999999874 455555421 11111 123568888888643 344 3599998885
Q ss_pred cccccch--HHHHHHHHhhcCCCcEEEEEc---CCCCCCChhh--HH---------------HHHHHHHHHHhcCcEEEE
Q 008748 230 IDWLQRD--GILLLELDRLLRPGGYFVYSS---PEAYAHDPEN--RR---------------IWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 230 l~~~~d~--~~~L~el~RvLkPGG~lvis~---P~~~~~~~e~--~~---------------~~~~l~~l~~~~gw~vv~ 287 (555)
+|..++. ..+|+++++.|+|||.++|.. |......... .. ..+++.++++++||+.++
T Consensus 149 Lh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~ 228 (244)
T d1fp1d2 149 CHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQ 228 (244)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEE
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceE
Confidence 5555443 458999999999999999866 2221111110 00 124788999999998775
Q ss_pred E
Q 008748 288 K 288 (555)
Q Consensus 288 ~ 288 (555)
.
T Consensus 229 v 229 (244)
T d1fp1d2 229 V 229 (244)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.38 E-value=6.9e-07 Score=89.60 Aligned_cols=127 Identities=11% Similarity=0.027 Sum_probs=84.1
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCC----CCCCCCCccEEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKR----LPYPSRSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~----Lp~~d~sFDlVv~s 226 (555)
+++|||+.||+|.++..++.. .|+++|+++..+..+..+...... .++.++.+|+.. +.-..++||+|++-
T Consensus 145 g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~D 224 (317)
T d2b78a2 145 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIID 224 (317)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEEc
Confidence 468999999999999887642 689999999988877766654432 357888888632 22234689999974
Q ss_pred ccc--------cccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHH-HHHHHHHHhcCcEEE
Q 008748 227 RCR--------IDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIW-NAMYDLLKSMCWKIV 286 (555)
Q Consensus 227 ~~~--------l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~-~~l~~l~~~~gw~vv 286 (555)
--. ..-..+...++..+.++|+|||.|++++-... .. .+.+ ..+...+...+..+.
T Consensus 225 PP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~-~~---~~~f~~~v~~a~~~~~~~~~ 289 (317)
T d2b78a2 225 PPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN-MT---VSQFKKQIEKGFGKQKHTYL 289 (317)
T ss_dssp CCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT-SC---HHHHHHHHHHHHTTCCCEEE
T ss_pred ChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-CC---HHHHHHHHHHHHHHcCCeEE
Confidence 211 11112335688999999999999999875431 11 1222 233444555566544
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.30 E-value=1.3e-06 Score=87.16 Aligned_cols=130 Identities=7% Similarity=0.031 Sum_probs=82.1
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcC--CCeEEEEeCCCCC----CCCCCCccEEEec
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRL----PYPSRSFELAHCS 226 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg--~~v~~~~~d~~~L----p~~d~sFDlVv~s 226 (555)
++.+|||++||+|.++..++.. .|+++|.+...+..+..+.....- .++.+++.|+... ....+.||+|++.
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilD 211 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD 211 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred CCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEEC
Confidence 3569999999999999988863 789999999888877766655432 2478888885432 2234689999973
Q ss_pred cccc-------cc--ccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 227 RCRI-------DW--LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 227 ~~~l-------~~--~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
--.+ .+ ..+...++..+.++|+|||.+++.+-........ ....-+.+.+...+..+.
T Consensus 212 PP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~--~~~~~~~~~~~~ag~~v~ 278 (309)
T d2igta1 212 PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFY--SMHELMRETMRGAGGVVA 278 (309)
T ss_dssp CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHH--HHHHHHHHHTTTSCSEEE
T ss_pred CCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHH--HHHHHHHHHHHhcCCcce
Confidence 1111 11 1223456778889999999766655332211211 112233444555665543
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=4e-06 Score=81.07 Aligned_cols=143 Identities=10% Similarity=0.072 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCC--CeEEE
Q 008748 133 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI--PSTLG 206 (555)
Q Consensus 133 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~--~v~~~ 206 (555)
..|...+.+++.... .......++||||||+|.++..|+. .+++|+|+++..+..+..+... .+. .+.+.
T Consensus 42 ~~~~~~i~~l~~~~~---~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~-n~l~~~~~~~ 117 (250)
T d2h00a1 42 LNYIHWVEDLIGHQD---SDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQ-NNLSDLIKVV 117 (250)
T ss_dssp HHHHHHHHHHHCCCC---GGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH-TTCTTTEEEE
T ss_pred HHHHHHHHHHhhhhc---cCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHH-hCCCcceeee
Confidence 346666777665321 1123446899999999999888885 3799999999988877755544 333 35555
Q ss_pred EeCCCCC------CCCCCCccEEEeccccccccc----------------------------------chHHHHHHHHhh
Q 008748 207 VLGTKRL------PYPSRSFELAHCSRCRIDWLQ----------------------------------RDGILLLELDRL 246 (555)
Q Consensus 207 ~~d~~~L------p~~d~sFDlVv~s~~~l~~~~----------------------------------d~~~~L~el~Rv 246 (555)
..+.... ...+++||+|+|+--.+.-.+ ....++++..+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~ 197 (250)
T d2h00a1 118 KVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQL 197 (250)
T ss_dssp ECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHH
T ss_pred eeccHHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHH
Confidence 5443221 124568999998632111000 012246667777
Q ss_pred cCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEE
Q 008748 247 LRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 287 (555)
Q Consensus 247 LkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~ 287 (555)
++..|++....... ...+++.+++++.|+..+.
T Consensus 198 ~~~~g~~t~~ig~~--------~~l~~i~~~L~~~g~~~i~ 230 (250)
T d2h00a1 198 KKRLRWYSCMLGKK--------CSLAPLKEELRIQGVPKVT 230 (250)
T ss_dssp GGGBSCEEEEESST--------TSHHHHHHHHHHTTCSEEE
T ss_pred hhcCcEEEEEecch--------hhHHHHHHHHHHcCCCeEE
Confidence 88888875433211 1234677788888885443
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.24 E-value=8.8e-07 Score=85.28 Aligned_cols=125 Identities=14% Similarity=0.026 Sum_probs=80.3
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccc
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 229 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~ 229 (555)
.+.++|||||||+|.++..++++ ++++.|+... + +.+ ....++.+...|... +.|. .|+++....
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-----~~~-~~~~r~~~~~~d~~~-~~P~--ad~~~l~~v- 148 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I-----EDA-PSYPGVEHVGGDMFV-SIPK--ADAVFMKWI- 148 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T-----TTC-CCCTTEEEEECCTTT-CCCC--CSCEECSSS-
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h-----hhc-ccCCceEEecccccc-cCCC--cceEEEEEE-
Confidence 34578999999999999999974 5666776442 1 111 223567888888643 3443 366666663
Q ss_pred cccccc--hHHHHHHHHhhcCCCcEEEEEcCC---CCCCChhhH------------------HHHHHHHHHHHhcCcEEE
Q 008748 230 IDWLQR--DGILLLELDRLLRPGGYFVYSSPE---AYAHDPENR------------------RIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 230 l~~~~d--~~~~L~el~RvLkPGG~lvis~P~---~~~~~~e~~------------------~~~~~l~~l~~~~gw~vv 286 (555)
+|...+ ...+|+++++.|+|||.++|...- ......... ...++++++++++||+.+
T Consensus 149 lh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~v 228 (243)
T d1kyza2 149 CHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGF 228 (243)
T ss_dssp STTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCE
T ss_pred eecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcE
Confidence 444433 355899999999999999986532 111111000 012377899999999877
Q ss_pred EEe
Q 008748 287 SKK 289 (555)
Q Consensus 287 ~~~ 289 (555)
+..
T Consensus 229 kv~ 231 (243)
T d1kyza2 229 KVH 231 (243)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.24 E-value=3.6e-06 Score=78.65 Aligned_cols=121 Identities=9% Similarity=0.030 Sum_probs=74.7
Q ss_pred CCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
.+.+|||+|||+|.++..++.+ .|+++|+++..+..+..+ +...+....+...|...++ +.||+|+++-. ..
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N-~~~~~~~~~~~~~d~~~~~---~~fD~Vi~nPP-~~ 120 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIEN-LGEFKGKFKVFIGDVSEFN---SRVDIVIMNPP-FG 120 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHH-TGGGTTSEEEEESCGGGCC---CCCSEEEECCC-CS
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHH-HHHcCCCceEEECchhhhC---CcCcEEEEcCc-cc
Confidence 3468999999999998877653 688999998877666533 4455778888888876653 67999997642 21
Q ss_pred cccc-h-HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 232 WLQR-D-GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 232 ~~~d-~-~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
.... . ..++.. .+.+++.+...... .. ....-++.++...||.+.....
T Consensus 121 ~~~~~~d~~~l~~---~~~~~~~v~~ih~~----~~---~~~~~i~~~~~~~g~~i~~~~~ 171 (201)
T d1wy7a1 121 SQRKHADRPFLLK---AFEISDVVYSIHLA----KP---EVRRFIEKFSWEHGFVVTHRLT 171 (201)
T ss_dssp SSSTTTTHHHHHH---HHHHCSEEEEEEEC----CH---HHHHHHHHHHHHTTEEEEEEEE
T ss_pred cccccccHHHHHH---HHhhcccchhcccc----hH---HHHHHHHHHHhhcCceEEEEEE
Confidence 1111 1 223333 33344444432211 11 2233466778889997665443
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.23 E-value=2.6e-07 Score=82.75 Aligned_cols=100 Identities=15% Similarity=0.093 Sum_probs=68.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCC-CCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~-Lp~~d~sFDlVv~s~~~ 229 (555)
+.+|||+|||+|.++...+.+ .|+++|.++..+.....+. ...+. ++.+..+|+.. +....++||+|++.-
T Consensus 15 g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~-~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP-- 91 (152)
T d2esra1 15 GGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNI-IMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP-- 91 (152)
T ss_dssp SCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-HTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC--
T ss_pred CCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhh-hhcccccchhhhcccccccccccccccceeEech--
Confidence 468999999999999877653 6899999988776555433 33333 36788888644 345567899999642
Q ss_pred cccc-cchHHHHHHHH--hhcCCCcEEEEEcCC
Q 008748 230 IDWL-QRDGILLLELD--RLLRPGGYFVYSSPE 259 (555)
Q Consensus 230 l~~~-~d~~~~L~el~--RvLkPGG~lvis~P~ 259 (555)
+|. ......+..+. ++|+|||.+++..+.
T Consensus 92 -Py~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~ 123 (152)
T d2esra1 92 -PYAKETIVATIEALAAKNLLSEQVMVVCETDK 123 (152)
T ss_dssp -SSHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred -hhccchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence 222 12233555443 579999999986644
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.21 E-value=1.1e-06 Score=82.30 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=49.1
Q ss_pred CCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s 226 (555)
+++|||+|||+|.++..++.. .|+++|+++..+ +.|+++...+.+..+|+..++ +.||+|+++
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~-----~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~N 114 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAI-----ETAKRNCGGVNFMVADVSEIS---GKYDTWIMN 114 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHH-----HHHHHHCTTSEEEECCGGGCC---CCEEEEEEC
T ss_pred CCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHH-----HHHHHccccccEEEEehhhcC---CcceEEEeC
Confidence 469999999999988766642 588888776554 555566667899999988765 679999976
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.20 E-value=4.3e-07 Score=84.18 Aligned_cols=89 Identities=20% Similarity=0.256 Sum_probs=73.0
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCC-CCchhHHhhccccchhcccccCCCCCCCccchhhccccccccccCCCC
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCS 480 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~-~~~l~~i~~rgl~g~~~~~ce~~~typrtydl~h~~~~~s~~~~~~c~ 480 (555)
.|+|++||.|.|+..|.. ++-++- ++.+.+.-+|++ -.+....+.++..+.+||+|++.+++..+. +
T Consensus 39 ~vLDiGcG~G~~~~~~~~-------~~giD~s~~~~~~a~~~~~-~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~----d 106 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKI-------KIGVEPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFVD----D 106 (208)
T ss_dssp CEEEETCTTSTTHHHHTC-------CEEEESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGSS----C
T ss_pred eEEEECCCCcccccccce-------EEEEeCChhhccccccccc-cccccccccccccccccccccccccccccc----c
Confidence 599999999999999965 234453 477888888874 466777788888789999999999998653 3
Q ss_pred hhhhhhhhcccccCCceEEEec
Q 008748 481 FEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 481 ~~~~~~e~drilrp~g~~i~rd 502 (555)
...+|-|+-|+|+|||.+++.+
T Consensus 107 ~~~~l~~~~~~L~pgG~l~i~~ 128 (208)
T d1vlma_ 107 PERALKEAYRILKKGGYLIVGI 128 (208)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccchhhhhhcCCCCceEEEEe
Confidence 7889999999999999999874
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.19 E-value=5.4e-07 Score=82.31 Aligned_cols=100 Identities=19% Similarity=0.250 Sum_probs=66.7
Q ss_pred CCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC----CCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR----LPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~----Lp~~d~sFDlVv~s~~~ 229 (555)
+.+|||+|||+|.++..++.+ .++++|.++..+..+..+ ++..+....+...+... ......+||+|++.-
T Consensus 42 g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N-~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP-- 118 (171)
T d1ws6a1 42 RGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKEN-VRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP-- 118 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHH-HHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC--
T ss_pred CCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHH-HHhhccccceeeeehhcccccccccCCccceeEEcc--
Confidence 358999999999999887754 677889988887666544 44456665666555322 224456899999642
Q ss_pred cccccchHHHHHHH--HhhcCCCcEEEEEcCC
Q 008748 230 IDWLQRDGILLLEL--DRLLRPGGYFVYSSPE 259 (555)
Q Consensus 230 l~~~~d~~~~L~el--~RvLkPGG~lvis~P~ 259 (555)
+|..+....+.++ ..+|+|||++++..+.
T Consensus 119 -PY~~~~~~~l~~l~~~~ll~~~g~ivie~~~ 149 (171)
T d1ws6a1 119 -PYAMDLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp -CTTSCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred -ccccCHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence 1222333344444 3579999999986543
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.17 E-value=6.8e-07 Score=84.63 Aligned_cols=97 Identities=20% Similarity=0.218 Sum_probs=67.6
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCCC-C-----CCCCCccE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-----YPSRSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~L-p-----~~d~sFDl 222 (555)
+++|||||||+|..+..|+.. +++++|+++.....++..+. ..+. .+++..++..+. + +..++||+
T Consensus 57 pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~-~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 57 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLN-FAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHH-HHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHH-HcCCCccceeeeccccccccchhhcccccccce
Confidence 468999999999999999863 68899999877766654443 3343 488888885432 2 44578999
Q ss_pred EEecccccccccchHHHHHHHHhhcCCCcEEEE
Q 008748 223 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 255 (555)
Q Consensus 223 Vv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvi 255 (555)
|+.-.. +-.......+.+..++|||||++++
T Consensus 136 ifiD~~--~~~~~~~~~l~~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 136 VFLDHW--KDRYLPDTLLLEKCGLLRKGTVLLA 166 (214)
T ss_dssp EEECSC--GGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred eeeccc--ccccccHHHHHHHhCccCCCcEEEE
Confidence 996432 1111112357788899999998765
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.16 E-value=3e-06 Score=81.68 Aligned_cols=124 Identities=9% Similarity=0.014 Sum_probs=81.6
Q ss_pred CCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
...+|||||||+|.++..++++ +++..|+.. .++.+ ....++.+..+|+.. +.+ .+|++++.+. +
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~------vi~~~-~~~~rv~~~~gD~f~-~~p--~aD~~~l~~v-L 148 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ------VVENL-SGSNNLTYVGGDMFT-SIP--NADAVLLKYI-L 148 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH------HHTTC-CCBTTEEEEECCTTT-CCC--CCSEEEEESC-G
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH------HHHhC-cccCceEEEecCccc-CCC--CCcEEEEEee-c
Confidence 3468999999999999999874 455555521 12222 123578899898754 333 4799998884 6
Q ss_pred ccccch--HHHHHHHHhhcCCC---cEEEEEcCCCC--CCChhhH-----------------HHHHHHHHHHHhcCcEEE
Q 008748 231 DWLQRD--GILLLELDRLLRPG---GYFVYSSPEAY--AHDPENR-----------------RIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 231 ~~~~d~--~~~L~el~RvLkPG---G~lvis~P~~~--~~~~e~~-----------------~~~~~l~~l~~~~gw~vv 286 (555)
|...+. ..+|+.+++.|+|| |.++|...-.. ....... ...++..++++++||+.+
T Consensus 149 Hdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~ 228 (244)
T d1fp2a2 149 HNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHY 228 (244)
T ss_dssp GGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEE
T ss_pred ccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceE
Confidence 655544 45899999999998 77777542110 0111000 013478899999999887
Q ss_pred EEe
Q 008748 287 SKK 289 (555)
Q Consensus 287 ~~~ 289 (555)
+..
T Consensus 229 ~i~ 231 (244)
T d1fp2a2 229 KIS 231 (244)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=1.8e-06 Score=81.95 Aligned_cols=98 Identities=14% Similarity=0.121 Sum_probs=70.8
Q ss_pred CCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCC-CC-----CCCCCccEE
Q 008748 156 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKR-LP-----YPSRSFELA 223 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~-Lp-----~~d~sFDlV 223 (555)
+++|||||||+|+.+.+++.. .++++|+++.....++..+.... ...+.+.++++.. ++ ...++||+|
T Consensus 60 ~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~i 139 (219)
T d2avda1 60 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA 139 (219)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccEE
Confidence 468999999999999999863 68889998877766654443322 2357888887532 22 235789999
Q ss_pred EecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 224 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 224 v~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
+.... -......+..+.++|+|||.+++-.
T Consensus 140 fiD~d----k~~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 140 VVDAD----KENCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp EECSC----STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEeCC----HHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 95432 2334567889999999999999854
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.00 E-value=3e-06 Score=78.85 Aligned_cols=101 Identities=18% Similarity=0.153 Sum_probs=70.2
Q ss_pred CCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC-----CCCCCccEEEec
Q 008748 156 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----YPSRSFELAHCS 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp-----~~d~sFDlVv~s 226 (555)
...+||++||+|.++..++++ .++++|.++.++..+.... ...+.++.+..+++..+. +..++||.|+.-
T Consensus 24 ~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l-~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~D 102 (192)
T d1m6ya2 24 EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKL-KEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMD 102 (192)
T ss_dssp TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHT-GGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhh-ccccccccchhHHHhhHHHHHHHcCCCCcceeeec
Confidence 468999999999999998863 6778887777665444222 222556888888765542 445789999753
Q ss_pred ccccc--------cccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 227 RCRID--------WLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 227 ~~~l~--------~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
..+-. -.......|..+.++|+|||.+++.+
T Consensus 103 lGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 103 LGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp CSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred cchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 21111 11233558999999999999999876
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.93 E-value=1e-05 Score=80.49 Aligned_cols=122 Identities=12% Similarity=0.125 Sum_probs=78.8
Q ss_pred CCCEEEEECCCCcHHHHHHhc----C-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEe
Q 008748 155 NIRNVLDVGCGVASFGAYLLS----H-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHC 225 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~----~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~ 225 (555)
...+|||.|||+|.++..+.. + .+.|+|+++..+..+..+.. ..+....+...|..... +...||+|++
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~-~~~~fD~vi~ 194 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD-LQRQKMTLLHQDGLANL-LVDPVDVVIS 194 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH-HHTCCCEEEESCTTSCC-CCCCEEEEEE
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHH-Hhhhhhhhhcccccccc-cccccccccc
Confidence 346899999999999887753 1 47788988877766654433 33566677777654332 3468999998
Q ss_pred ccccccccc-----------------chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcC
Q 008748 226 SRCRIDWLQ-----------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC 282 (555)
Q Consensus 226 s~~~l~~~~-----------------d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g 282 (555)
+--...... -...++..+.+.|+|||+++++.|..+..... ...+.+.+-+.+
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~----~~~lR~~L~~~~ 264 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSD----FAKVDKFIKKNG 264 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTT----HHHHHHHHHHHE
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCch----hHHHHHHHHhCC
Confidence 642111100 01236889999999999999999876533322 234555444443
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.90 E-value=5.6e-06 Score=76.10 Aligned_cols=98 Identities=11% Similarity=0.042 Sum_probs=68.0
Q ss_pred CEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC-CCCCCCCccEEEeccccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~-Lp~~d~sFDlVv~s~~~l~~ 232 (555)
.+|||++||+|.++...+.+ .|+.+|.+...+.....+...-...+..+...|+.. +......||+|++.- +|
T Consensus 45 ~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DP---PY 121 (183)
T d2fpoa1 45 AQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDP---PF 121 (183)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECC---SS
T ss_pred hhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcC---cc
Confidence 58999999999999987754 688999998887666655443333456777777432 334557899999653 23
Q ss_pred cc-chHHHHHHHHh--hcCCCcEEEEEc
Q 008748 233 LQ-RDGILLLELDR--LLRPGGYFVYSS 257 (555)
Q Consensus 233 ~~-d~~~~L~el~R--vLkPGG~lvis~ 257 (555)
.. ....++..+.+ +|+++|.+++..
T Consensus 122 ~~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 122 RRGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp STTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ccchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 22 23455655554 699999999854
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=97.86 E-value=1e-05 Score=79.07 Aligned_cols=118 Identities=13% Similarity=0.119 Sum_probs=74.5
Q ss_pred CCEEEEECCCCcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCC--CeEEEEeCCCC-CCCCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LPYPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~rg~--~v~~~~~d~~~-Lp~~d~sFDlVv~s~~~ 229 (555)
..++||+|||+|..+..++. ..|+++|+++..+.-++.+ |...+. .+.+...+... ++...+.||+|+|+---
T Consensus 111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~N-a~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPY 189 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKN-AERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPY 189 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHH-HHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCC
T ss_pred ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHH-HHHcCCCceeEEeecccccccccccCcccEEEEcccc
Confidence 35899999999988887764 3789999999988777754 444444 34555555433 23334689999985211
Q ss_pred cc----------ccc--------chHHHH-HHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCc
Q 008748 230 ID----------WLQ--------RDGILL-LELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 283 (555)
Q Consensus 230 l~----------~~~--------d~~~~L-~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw 283 (555)
+. |-+ |.-.++ +=+.+.|+|||++++-.... .-+.+.+++++.||
T Consensus 190 I~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~---------Q~~~v~~l~~~~g~ 253 (271)
T d1nv8a_ 190 VKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED---------QVEELKKIVSDTVF 253 (271)
T ss_dssp BCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT---------CHHHHTTTSTTCEE
T ss_pred cCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHH---------HHHHHHHHHHhCCE
Confidence 11 100 011122 22567899999999865431 12356677777776
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.83 E-value=3.2e-05 Score=71.57 Aligned_cols=114 Identities=15% Similarity=0.131 Sum_probs=72.9
Q ss_pred HHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeC
Q 008748 135 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG 209 (555)
Q Consensus 135 y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d 209 (555)
..+.+.+++.. .++.+|||.|||+|.|+..+.++ .+.++|+++..+. ......+...+
T Consensus 7 i~~~m~~l~~~--------~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~---------~~~~~~~~~~~ 69 (223)
T d2ih2a1 7 VVDFMVSLAEA--------PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD---------LPPWAEGILAD 69 (223)
T ss_dssp HHHHHHHHCCC--------CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC---------CCTTEEEEESC
T ss_pred HHHHHHHhcCC--------CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh---------hcccceeeeee
Confidence 34455565542 23469999999999998877642 4778888765431 12235666666
Q ss_pred CCCCCCCCCCccEEEecccccccc---------------------------cc-hHHHHHHHHhhcCCCcEEEEEcCCCC
Q 008748 210 TKRLPYPSRSFELAHCSRCRIDWL---------------------------QR-DGILLLELDRLLRPGGYFVYSSPEAY 261 (555)
Q Consensus 210 ~~~Lp~~d~sFDlVv~s~~~l~~~---------------------------~d-~~~~L~el~RvLkPGG~lvis~P~~~ 261 (555)
...... ...||+|+++....... .+ ...++..+.+.|++||++++..|..+
T Consensus 70 ~~~~~~-~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~ 148 (223)
T d2ih2a1 70 FLLWEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATW 148 (223)
T ss_dssp GGGCCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred hhcccc-ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeee
Confidence 544443 36799999753211100 00 13467889999999999999998866
Q ss_pred CCChh
Q 008748 262 AHDPE 266 (555)
Q Consensus 262 ~~~~e 266 (555)
.....
T Consensus 149 l~~~~ 153 (223)
T d2ih2a1 149 LVLED 153 (223)
T ss_dssp GTCGG
T ss_pred ccCcc
Confidence 54443
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.78 E-value=1.4e-05 Score=76.17 Aligned_cols=109 Identities=13% Similarity=0.135 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC--CeEE
Q 008748 133 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTL 205 (555)
Q Consensus 133 ~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~--~v~~ 205 (555)
.++...+.++.. +++||+||+++|+.+..|++ ..++++|.++.....+...+. +.|. .+.+
T Consensus 48 g~~L~~L~~~~~-----------~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~-~~g~~~~i~~ 115 (227)
T d1susa1 48 GQFLSMLLKLIN-----------AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIK-KAGVDHKIDF 115 (227)
T ss_dssp HHHHHHHHHHHT-----------CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHH-HTTCGGGEEE
T ss_pred HHHHHHHHHhcC-----------CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHH-Hhccccceee
Confidence 456666666553 46899999999999999884 378889998877655554443 3343 4778
Q ss_pred EEeCCCC-CC------CCCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 206 GVLGTKR-LP------YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 206 ~~~d~~~-Lp------~~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
..+++.. ++ ...++||+|+.-. .-......+..+.+.|+|||.+++-.
T Consensus 116 ~~g~a~~~L~~l~~~~~~~~~fD~iFiDa----~k~~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 116 REGPALPVLDEMIKDEKNHGSYDFIFVDA----DKDNYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp EESCHHHHHHHHHHCGGGTTCBSEEEECS----CSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred eehHHHHHHHHHHhccccCCceeEEEecc----chhhhHHHHHHHHhhcCCCcEEEEcc
Confidence 8887532 22 1246899999543 22344568888999999999999853
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=97.77 E-value=5.4e-06 Score=77.45 Aligned_cols=94 Identities=18% Similarity=0.234 Sum_probs=65.0
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-CchhH----Hhhccc--cchhcccccCCCCCCCccchhhcccccccc
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRGL--IGTVHDWCESFSTYPRTYDLLHAWKVFSEI 474 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~----i~~rgl--~g~~~~~ce~~~typrtydl~h~~~~~s~~ 474 (555)
.|+|++||.|.|+.+|.+.-. +|+=++-. +.+.. +.+.|+ |-.++.=++.++.=+.+||+|++.+++..+
T Consensus 18 rVLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l~~~ 94 (231)
T d1vl5a_ 18 EVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHF 94 (231)
T ss_dssp EEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGGGC
T ss_pred EEEEecccCcHHHHHHHHhCC---EEEEEECCHHHHhhhhhccccccccccccccccccccccccccccccccccccccc
Confidence 699999999999999876533 34433322 33332 233454 334444455555335799999999988743
Q ss_pred ccCCCChhhhhhhhcccccCCceEEEec
Q 008748 475 EERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 475 ~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
-+...+|-|+-|+|+|||+++|-|
T Consensus 95 ----~d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 95 ----PNPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp ----SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 248899999999999999999865
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.76 E-value=2.5e-05 Score=71.71 Aligned_cols=122 Identities=14% Similarity=0.056 Sum_probs=80.1
Q ss_pred CCCccHHHHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcC-CC
Q 008748 127 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG-IP 202 (555)
Q Consensus 127 ~f~~~a~~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg-~~ 202 (555)
...+..+...+.+-.++... ....+|||++||+|.++...+.+ .|+.+|.+...+..+..+...-.. .+
T Consensus 20 ~~RPt~~~vrealFn~l~~~-------~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~ 92 (182)
T d2fhpa1 20 NTRPTTDKVKESIFNMIGPY-------FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEK 92 (182)
T ss_dssp SSCCCCHHHHHHHHHHHCSC-------CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGG
T ss_pred CcCcCcHHHHHHHHHHHHHh-------cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 34555566666777776532 23468999999999999988764 688899988777655544433222 25
Q ss_pred eEEEEeCCCCC----CCCCCCccEEEecccccccc-cchHHHHHHHHh--hcCCCcEEEEEcC
Q 008748 203 STLGVLGTKRL----PYPSRSFELAHCSRCRIDWL-QRDGILLLELDR--LLRPGGYFVYSSP 258 (555)
Q Consensus 203 v~~~~~d~~~L----p~~d~sFDlVv~s~~~l~~~-~d~~~~L~el~R--vLkPGG~lvis~P 258 (555)
+.+...|+... .-....||+|++-- +|. .+....+..+.. +|+++|++++-.+
T Consensus 93 ~~i~~~D~~~~l~~~~~~~~~fDlIflDP---PY~~~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 93 FEVRKMDANRALEQFYEEKLQFDLVLLDP---PYAKQEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp EEEEESCHHHHHHHHHHTTCCEEEEEECC---CGGGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cccccccchhhhhhhcccCCCcceEEech---hhhhhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 77888885432 12345799999542 232 233556776654 6999999988543
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.75 E-value=7e-06 Score=80.50 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=68.3
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHH----------HcCCCeEEEEeCCCCCCCCCCCc
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFAL----------ERGIPSTLGVLGTKRLPYPSRSF 220 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~----------~rg~~v~~~~~d~~~Lp~~d~sF 220 (555)
.++++||-||+|.|..+..++.. .|+.+|+++..+..+..-+.. ...+++.+..+|+...--.+++|
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 44679999999999999988865 466777777655444321100 12356888888864332235789
Q ss_pred cEEEecccccccccc----hHHHHHHHHhhcCCCcEEEEEcC
Q 008748 221 ELAHCSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 221 DlVv~s~~~l~~~~d----~~~~L~el~RvLkPGG~lvis~P 258 (555)
|+|++-. .-..... ...+++.+.+.|+|||.+++-..
T Consensus 151 DvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~ 191 (276)
T d1mjfa_ 151 DVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 191 (276)
T ss_dssp EEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CEEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCceEEEecC
Confidence 9999632 1111111 15689999999999999998553
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.74 E-value=7.4e-06 Score=80.41 Aligned_cols=103 Identities=9% Similarity=0.200 Sum_probs=74.6
Q ss_pred CCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCCCchh----HHhhccccchhcccccCCCCCCCccchhhcccc
Q 008748 396 QKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLK----IIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 396 ~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~~~l~----~i~~rgl~g~~~~~ce~~~typrtydl~h~~~~ 470 (555)
+-..=-.|+|++||.||||..+.+. ++-|.-|... ++++. .+.+.||.+..+.-+.-+...|.+||.|-+.++
T Consensus 49 ~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls--~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i~si~~ 126 (280)
T d2fk8a1 49 DLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLS--KNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEA 126 (280)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESC
T ss_pred CCCCCCEEEEecCCchHHHHHHHHhCceeEEEecch--HHHHHHHHHHHHhhccccchhhhhhhhhhhccchhhhhHhhH
Confidence 3333457999999999999877644 5544333322 24444 466678877666666666677889999999999
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
|-++..+ ....++=++.|+|+|||.++|.+
T Consensus 127 ~eh~~~~--~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 127 FEHFGHE--NYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp GGGTCGG--GHHHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHhhhh--hHHHHHHHHHhccCCCceEEEEE
Confidence 8765432 46789999999999999999864
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=97.72 E-value=1.5e-05 Score=74.55 Aligned_cols=94 Identities=21% Similarity=0.394 Sum_probs=67.0
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCC-CCchhHHhhccccchhcccccCCCCCCCccchhhcc-ccccccccCCC
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAW-KVFSEIEERGC 479 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~-~~~l~~i~~rgl~g~~~~~ce~~~typrtydl~h~~-~~~s~~~~~~c 479 (555)
.|+|++||.|.++-.|.+.. + .|+=+|- +..|.+.-++|+.-....=.+.++.-+.+||+|-+. +++..+.
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~-~--~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~---- 117 (246)
T d2avna1 45 RVLDLGGGTGKWSLFLQERG-F--EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE---- 117 (246)
T ss_dssp EEEEETCTTCHHHHHHHTTT-C--EEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCS----
T ss_pred EEEEECCCCchhcccccccc-e--EEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhh----
Confidence 49999999999999998763 3 4555554 377888888876432222234455445799998864 4655332
Q ss_pred ChhhhhhhhcccccCCceEEEec
Q 008748 480 SFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 480 ~~~~~~~e~drilrp~g~~i~rd 502 (555)
+...+|-|+-|+|+|||.+++..
T Consensus 118 d~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 118 NKDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHHHHHHHHhhcCcCcEEEEEE
Confidence 36678889999999999999864
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=1.4e-05 Score=74.79 Aligned_cols=119 Identities=18% Similarity=0.255 Sum_probs=77.1
Q ss_pred cceeEeeccCCcchhhhhccCCCceEEEecccCC-CCchhHHhhc----cc--cchhcccccCCCCCCCccchhhccccc
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GL--IGTVHDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~-~~~l~~i~~r----gl--~g~~~~~ce~~~typrtydl~h~~~~~ 471 (555)
.-..|+|++||.|.++..|...-.. .|+=++- ++.|...-++ |. +-.++.=.+.++.-+.+||+|.+.+++
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l 137 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLFR--EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 137 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCS--EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCEEEEeccCCCHhhHHHHHhcCC--EEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence 4467999999999999887644322 3443443 2445443322 32 111121123355456899999999988
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEecchh---------------HHHHHHHHHhhcCccc
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS---------------IINYIRKFITALKWDG 521 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~---------------~~~~~~~~~~~~~w~~ 521 (555)
..+... .+..+|-++=|+|+|||.+++.|... ..++++++++.--+++
T Consensus 138 ~h~~~~--~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~i 200 (222)
T d2ex4a1 138 GHLTDQ--HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSL 200 (222)
T ss_dssp GGSCHH--HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCE
T ss_pred ccchhh--hhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEE
Confidence 754321 24578999999999999999863211 2677888888777775
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=97.68 E-value=1e-05 Score=78.64 Aligned_cols=94 Identities=21% Similarity=0.327 Sum_probs=64.8
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCC-CCchhHH----hhcccc---chh-cccccCCCCCCCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKII----YDRGLI---GTV-HDWCESFSTYPRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~-~~~l~~i----~~rgl~---g~~-~~~ce~~~typrtydl~h~~~~ 470 (555)
..|||++||.|+++..|.+. .. +|+-++- +..+... -..||- -+. .|++ .++.=+.+||+|.+.++
T Consensus 69 ~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~-~l~~~~~sfD~V~~~~~ 144 (282)
T d2o57a1 69 AKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL-EIPCEDNSYDFIWSQDA 144 (282)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTT-SCSSCTTCEEEEEEESC
T ss_pred CEEEEeCCCCcHHHhhhhccCCc---EEEEEeccchhhhhhhcccccccccccccccccccc-cccccccccchhhccch
Confidence 48999999999999998754 32 3444443 2444433 234553 222 2443 34433589999999998
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
|-.+. +...+|-|+-|+|||||.+++.|
T Consensus 145 l~h~~----d~~~~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 145 FLHSP----DKLKVFQECARVLKPRGVMAITD 172 (282)
T ss_dssp GGGCS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhcc----CHHHHHHHHHHhcCCCcEEEEEE
Confidence 87543 36789999999999999999864
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=97.62 E-value=1.2e-05 Score=77.58 Aligned_cols=123 Identities=13% Similarity=0.122 Sum_probs=77.9
Q ss_pred cCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----ccccchhcccccCCCCCCCccchhhccc
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGLIGTVHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl~g~~~~~ce~~~typrtydl~h~~~ 469 (555)
+....-.+|+|++||.|.++..|..+-.- +|.-++.. .-|...-+ ++.+=.++.=-+.|+.=+.+||+|.+..
T Consensus 89 l~~~~~~~vLD~GcG~G~~t~~ll~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~ 166 (254)
T d1xtpa_ 89 LPGHGTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQW 166 (254)
T ss_dssp STTCCCSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEES
T ss_pred CCCCCCCeEEEecccCChhhHHHHhhcCc--eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeec
Confidence 44556678999999999999987642111 33333432 33333222 2333223222334444467999999999
Q ss_pred cccccccCCCChhhhhhhhcccccCCceEEEecchh----------------HHHHHHHHHhhcCccc
Q 008748 470 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS----------------IINYIRKFITALKWDG 521 (555)
Q Consensus 470 ~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~----------------~~~~~~~~~~~~~w~~ 521 (555)
+|-++... .+..+|-++-|+|+|||+++|.|... ...+++++++.-.+++
T Consensus 167 vl~hl~d~--d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~i 232 (254)
T d1xtpa_ 167 TAIYLTDA--DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRV 232 (254)
T ss_dssp CGGGSCHH--HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCE
T ss_pred cccccchh--hhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEE
Confidence 98865432 25678999999999999999976432 1456677776666655
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=97.62 E-value=1.8e-05 Score=74.57 Aligned_cols=94 Identities=16% Similarity=0.276 Sum_probs=67.2
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-CchhH----Hhhccc--cchhcccccCCCCCCCccchhhcccccccc
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRGL--IGTVHDWCESFSTYPRTYDLLHAWKVFSEI 474 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~----i~~rgl--~g~~~~~ce~~~typrtydl~h~~~~~s~~ 474 (555)
-|+|++||.|.++..|.+.- =+|+=+|-+ +.|.+ +-++|+ +-.++.=.|.++.=..+||+|.+.++|...
T Consensus 19 rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 95 (234)
T d1xxla_ 19 RVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHF 95 (234)
T ss_dssp EEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGGGC
T ss_pred EEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeeeceeecc
Confidence 49999999999999998742 366666644 55544 334454 333443345554334699999999988743
Q ss_pred ccCCCChhhhhhhhcccccCCceEEEec
Q 008748 475 EERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 475 ~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
-+...+|=|+.|+|||||.+++.|
T Consensus 96 ----~d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 96 ----SDVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp ----SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----cCHHHHHHHHHHeeCCCcEEEEEE
Confidence 248899999999999999999854
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=97.61 E-value=1.6e-05 Score=74.67 Aligned_cols=92 Identities=24% Similarity=0.320 Sum_probs=61.7
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhccc--cchhcccccCCCCCCCccchhhccccccccccCC
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGL--IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERG 478 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rgl--~g~~~~~ce~~~typrtydl~h~~~~~s~~~~~~ 478 (555)
+|||++||.|.|+..|.+.- + .|+=++-. +-+.+.-.|.- +-..+.=-+.++ -+.+||+|-+.++|..+.
T Consensus 23 ~VLDiGcG~G~~~~~l~~~g-~--~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~-~~~~fD~I~~~~vleh~~--- 95 (225)
T d2p7ia1 23 NLLELGSFKGDFTSRLQEHF-N--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ-LPRRYDNIVLTHVLEHID--- 95 (225)
T ss_dssp CEEEESCTTSHHHHHHTTTC-S--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC-CSSCEEEEEEESCGGGCS---
T ss_pred cEEEEeCCCcHHHHHHHHcC-C--eEEEEeCcHHHhhhhhcccccccccccccccccc-cccccccccccceeEecC---
Confidence 59999999999999997652 2 34444432 34444433311 111222223333 378999999999998654
Q ss_pred CChhhhhhhh-cccccCCceEEEe
Q 008748 479 CSFEDLLIEM-DRMLRPEGFVIIR 501 (555)
Q Consensus 479 c~~~~~~~e~-drilrp~g~~i~r 501 (555)
+...+|.|+ +|+|+|||.++|.
T Consensus 96 -d~~~~l~~i~~~~Lk~gG~l~i~ 118 (225)
T d2p7ia1 96 -DPVALLKRINDDWLAEGGRLFLV 118 (225)
T ss_dssp -SHHHHHHHHHHTTEEEEEEEEEE
T ss_pred -CHHHHHHHHHHHhcCCCceEEEE
Confidence 367888898 6999999999985
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.58 E-value=6.1e-05 Score=74.28 Aligned_cols=107 Identities=12% Similarity=0.080 Sum_probs=72.8
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHH----cCCCeEEEEeCCCC-CCCCCCCccEEE
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKR-LPYPSRSFELAH 224 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~----rg~~v~~~~~d~~~-Lp~~d~sFDlVv 224 (555)
..+++||-||.|.|..+..+++. .|+.+|+++..+..+..-+... ...++.+...|+.. +.-.++.||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 34679999999999999999864 4778888887665554322221 24578888888532 222346899999
Q ss_pred ecccccccc-c----chHHHHHHHHhhcCCCcEEEEEcCCCC
Q 008748 225 CSRCRIDWL-Q----RDGILLLELDRLLRPGGYFVYSSPEAY 261 (555)
Q Consensus 225 ~s~~~l~~~-~----d~~~~L~el~RvLkPGG~lvis~P~~~ 261 (555)
+-. .-... + ....+++.+.+.|+|||.+++-....+
T Consensus 168 ~D~-~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~ 208 (295)
T d1inla_ 168 IDS-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPF 208 (295)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred EcC-CCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChh
Confidence 632 11111 1 125699999999999999998765543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=97.56 E-value=1.5e-05 Score=75.73 Aligned_cols=98 Identities=12% Similarity=0.111 Sum_probs=68.0
Q ss_pred cCCCcceeEeeccCCcchhhhhccC-CCceEEEecccCCCCchhHH----hhccccc----hhcccccCCCCCCCccchh
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMSARLKII----YDRGLIG----TVHDWCESFSTYPRTYDLL 465 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~-~~~wvmnv~p~~~~~~l~~i----~~rgl~g----~~~~~ce~~~typrtydl~ 465 (555)
+..+ -.|+|++||.|+++..|.. .++.|.-|=+. +..+.+. -+.|+-. +..|+-+- +.+.+||++
T Consensus 31 l~pg--~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s--~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~--~~~~~fD~v 104 (245)
T d1nkva_ 31 MKPG--TRILDLGSGSGEMLCTWARDHGITGTGIDMS--SLFTAQAKRRAEELGVSERVHFIHNDAAGY--VANEKCDVA 104 (245)
T ss_dssp CCTT--CEEEEETCTTCHHHHHHHHHTCCEEEEEESC--HHHHHHHHHHHHHTTCTTTEEEEESCCTTC--CCSSCEEEE
T ss_pred CCCC--CEEEEEcCCCCHHHHHHHHhcCCEEEEEecc--cchhhHHHHHHHHhhccccchhhhhHHhhc--cccCceeEE
Confidence 4554 3699999999999998865 36666554332 2344333 3336522 33355443 336899999
Q ss_pred hccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 466 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 466 h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
++.+.+..+. +...+|-||-|+|||||.++|.+
T Consensus 105 ~~~~~~~~~~----d~~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 105 ACVGATWIAG----GFAGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp EEESCGGGTS----SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred EEEehhhccC----CHHHHHHHHHHHcCcCcEEEEEe
Confidence 9998887443 37889999999999999999974
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.54 E-value=0.00017 Score=70.76 Aligned_cols=107 Identities=16% Similarity=0.116 Sum_probs=73.4
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHH----HcCCCeEEEEeCCCCC--CCCCCCccEE
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFAL----ERGIPSTLGVLGTKRL--PYPSRSFELA 223 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~----~rg~~v~~~~~d~~~L--p~~d~sFDlV 223 (555)
.++++||=||-|.|..+..+++. .++.+|+++..+..+..-+.. ....++.+...|.... ...+++||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 35679999999999999999864 577888888766554432211 1246788888884322 1345689999
Q ss_pred Eeccccccccc----chHHHHHHHHhhcCCCcEEEEEcCCCC
Q 008748 224 HCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAY 261 (555)
Q Consensus 224 v~s~~~l~~~~----d~~~~L~el~RvLkPGG~lvis~P~~~ 261 (555)
+.-. .-.... -...+++.+.+.|+|||.+++-.+..+
T Consensus 159 i~D~-~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~ 199 (290)
T d1xj5a_ 159 IVDS-SDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLW 199 (290)
T ss_dssp EECC-CCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred EEcC-CCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcH
Confidence 9532 111111 115689999999999999999776543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=5.5e-05 Score=71.50 Aligned_cols=120 Identities=9% Similarity=0.077 Sum_probs=73.7
Q ss_pred ceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc------------------cccchhccc---------
Q 008748 400 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR------------------GLIGTVHDW--------- 451 (555)
Q Consensus 400 ~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r------------------gl~g~~~~~--------- 451 (555)
=..|||++||.|.++.-+...... +|+=++-+ +.+.+.-++ ++-|.+..+
T Consensus 52 g~~vLDlGcG~G~~~~~~~~~~~~--~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (257)
T d2a14a1 52 GDTLIDIGSGPTIYQVLAACDSFQ--DITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 129 (257)
T ss_dssp EEEEEESSCTTCCGGGTTGGGTEE--EEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCEEEEECCCCCHhHHHHhccccC--cEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence 456999999999998766654433 45555532 444433221 111221111
Q ss_pred ----------ccC--C-CCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecchh-------------
Q 008748 452 ----------CES--F-STYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS------------- 505 (555)
Q Consensus 452 ----------ce~--~-~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~------------- 505 (555)
+.. . +.-+.+||+|-+..++..+....=++..++=+|-|+|||||++|+.+-..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~ 209 (257)
T d2a14a1 130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC 209 (257)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred hhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccc
Confidence 111 1 22245899998887776432221235568899999999999999875221
Q ss_pred ---HHHHHHHHHhhcCccc
Q 008748 506 ---IINYIRKFITALKWDG 521 (555)
Q Consensus 506 ---~~~~~~~~~~~~~w~~ 521 (555)
..+.|+++++.-.+++
T Consensus 210 ~~~~~~~~~~~l~~aGf~v 228 (257)
T d2a14a1 210 VALEKGEVEQAVLDAGFDI 228 (257)
T ss_dssp CCCCHHHHHHHHHHTTEEE
T ss_pred cCCCHHHHHHHHHHCCCEE
Confidence 3678888888877765
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.50 E-value=2.8e-05 Score=73.31 Aligned_cols=115 Identities=16% Similarity=0.239 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHH----hhccccchhccc-cc
Q 008748 380 WQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKII----YDRGLIGTVHDW-CE 453 (555)
Q Consensus 380 w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i----~~rgl~g~~~~~-ce 453 (555)
+...+..+.+.+. .........|+|++||.|.++..|.+... +|+=++-. +-|... -++|+-..++.. -+
T Consensus 23 ~~~~~~~~~~~~~-~~~~~~~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~ 98 (251)
T d1wzna1 23 VKAEIDFVEEIFK-EDAKREVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVL 98 (251)
T ss_dssp HHHHHHHHHHHHH-HTCSSCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred HHHHHHHHHHHHH-HhcCCCCCEEEEeCCCCCccchhhcccce---EEEEEeeccccccccccccccccccchheehhhh
Confidence 3344444444443 34455567899999999999999876542 66666644 455543 344553323321 24
Q ss_pred CCCCCCCccchhhcc-ccccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 454 SFSTYPRTYDLLHAW-KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 454 ~~~typrtydl~h~~-~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
.+ .++.+||+|.+. +.|..+.. .+....|-++-|+|+|||.+|+.
T Consensus 99 ~l-~~~~~fD~I~~~~~~~~~~~~--~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 99 EI-AFKNEFDAVTMFFSTIMYFDE--EDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp GC-CCCSCEEEEEECSSGGGGSCH--HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hc-ccccccchHhhhhhhhhcCCh--HHHHHHHHHHHHHcCCCcEEEEE
Confidence 44 367899999864 45553321 24678999999999999999984
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.48 E-value=0.00066 Score=67.66 Aligned_cols=123 Identities=15% Similarity=0.112 Sum_probs=80.3
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC-C---CCCCCccEEEeccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-P---YPSRSFELAHCSRC 228 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L-p---~~d~sFDlVv~s~~ 228 (555)
+..+|||+-||+|.|+..|++. .|+++|+++..+..+..+.......++.+..++.... + .....||+|+.---
T Consensus 212 ~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPP 291 (358)
T d1uwva2 212 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPA 291 (358)
T ss_dssp TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCC
T ss_pred CCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEeCCC
Confidence 3468999999999999999974 7999999998887777554444445678888876442 2 23467999985321
Q ss_pred ccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEeec
Q 008748 229 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQ 291 (555)
Q Consensus 229 ~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~~ 291 (555)
-.- ....+..+.+. +|.-.+++|--+. ..-+++..| .+.||++...+..
T Consensus 292 -R~G---~~~~~~~l~~~-~~~~ivYVSCnp~--------TlaRDl~~l-~~~gy~l~~i~~~ 340 (358)
T d1uwva2 292 -RAG---AAGVMQQIIKL-EPIRIVYVSCNPA--------TLARDSEAL-LKAGYTIARLAML 340 (358)
T ss_dssp -TTC---CHHHHHHHHHH-CCSEEEEEESCHH--------HHHHHHHHH-HHTTCEEEEEEEE
T ss_pred -Ccc---HHHHHHHHHHc-CCCEEEEEeCCHH--------HHHHHHHHH-HHCCCeEeEEEEE
Confidence 111 12356666654 7777777765321 122344443 4568988765543
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.47 E-value=3.9e-05 Score=76.29 Aligned_cols=124 Identities=11% Similarity=0.071 Sum_probs=78.1
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHH-----cCCCeEEEEeCCCCC-CCCCCCccEE
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE-----RGIPSTLGVLGTKRL-PYPSRSFELA 223 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~-----rg~~v~~~~~d~~~L-p~~d~sFDlV 223 (555)
..+++||.||.|.|..+..+++. +|+.+|+++..+..+...+..- ...++.+..+|+... .-.+++||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 34679999999999999988753 5788888887665554333211 245788888885432 2234679999
Q ss_pred Eeccccccccc-------chHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhc
Q 008748 224 HCSRCRIDWLQ-------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 281 (555)
Q Consensus 224 v~s~~~l~~~~-------d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~ 281 (555)
++-. .-.+.. ....+++.+.+.|+|||.+++-....+.... +....+.+.+++.
T Consensus 156 i~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~---~~~~~i~~tl~~~ 216 (312)
T d1uira_ 156 IIDL-TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHH---RVHPVVHRTVREA 216 (312)
T ss_dssp EEEC-CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC------CHHHHHHHHHHTT
T ss_pred EEeC-CCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchH---HHHHHHHHHHHHh
Confidence 9532 111111 1156899999999999999985433221111 2334455555555
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.45 E-value=3.4e-05 Score=71.11 Aligned_cols=95 Identities=21% Similarity=0.295 Sum_probs=65.8
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cccchhccccc---CCCCCCCccchhhccccccc
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GLIGTVHDWCE---SFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl~g~~~~~ce---~~~typrtydl~h~~~~~s~ 473 (555)
.|+|++||.|.++..|.+... +|+-+|-+ +.+.++-++ |+.- ...|. .++....+||+|.+.++|..
T Consensus 40 ~ILDiGcG~G~~~~~la~~~~---~v~giD~S~~~i~~ak~~~~~~~~~~--~~~~~d~~~l~~~~~~fD~I~~~~~l~~ 114 (226)
T d1ve3a1 40 KVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNV--EFIVGDARKLSFEDKTFDYVIFIDSIVH 114 (226)
T ss_dssp EEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCC--EEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred EEEEECCCcchhhhhHhhhhc---ccccccccccchhhhhhhhccccccc--cccccccccccccCcCceEEEEecchhh
Confidence 589999999999999986532 46666644 666554433 3321 12222 23333479999999998885
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
+.. -++..+|-|+-|+|+|||.++|.+.
T Consensus 115 ~~~--~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 115 FEP--LELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp CCH--HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCh--hHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 421 2366789999999999999998753
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.39 E-value=0.00011 Score=71.52 Aligned_cols=123 Identities=12% Similarity=0.103 Sum_probs=79.5
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHH----cCCCeEEEEeCCCC-CCCCCCCccEEE
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALE----RGIPSTLGVLGTKR-LPYPSRSFELAH 224 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~----rg~~v~~~~~d~~~-Lp~~d~sFDlVv 224 (555)
..+++||-||-|.|..+..++.. .|+.+|+++.-+..+..-+... ..+++.+...|... +--.+++||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 34579999999999999999864 5778888887665554332221 13568888888533 223357899999
Q ss_pred ecccccccc----cchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhc
Q 008748 225 CSRCRIDWL----QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 281 (555)
Q Consensus 225 ~s~~~l~~~----~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~ 281 (555)
.-. .-... -....+++.+.+.|+|||.++.-....+.. . +....+.+.+++.
T Consensus 154 ~D~-~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~-~---~~~~~i~~tl~~~ 209 (274)
T d1iy9a_ 154 VDS-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFT-P---ELITNVQRDVKEI 209 (274)
T ss_dssp ESC-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTC-H---HHHHHHHHHHHTT
T ss_pred EcC-CCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCcccc-H---HHHHHHHHhhhhh
Confidence 532 11111 112568999999999999999876554322 2 2334444445554
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.38 E-value=2.9e-05 Score=76.25 Aligned_cols=113 Identities=10% Similarity=0.189 Sum_probs=71.8
Q ss_pred HHHHHHhhhhccCCCcceeEeeccCCcchhhhhcc-CCCceEEEecccCCC--CchhHHhhccccchhcccccCCCCCCC
Q 008748 384 VVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALK-DKDVWVMNVAPVRMS--ARLKIIYDRGLIGTVHDWCESFSTYPR 460 (555)
Q Consensus 384 v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~-~~~~wvmnv~p~~~~--~~l~~i~~rgl~g~~~~~ce~~~typr 460 (555)
++...+.++ |+.| ..|+|++||.||+|-.+. ..++=|.-|...... ---..+.+.||.+-..--+.-+...|-
T Consensus 51 ~~~~~~~l~--l~~G--~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~ 126 (285)
T d1kpga_ 51 IDLALGKLG--LQPG--MTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDE 126 (285)
T ss_dssp HHHHHTTTT--CCTT--CEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCC
T ss_pred HHHHHHHcC--CCCC--CEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccc
Confidence 344444453 5555 459999999999987654 334544443332221 112246777876655433444445567
Q ss_pred ccchhhccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 461 TYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 461 tydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+||-|=+-+.|-+...+ +...++-++.|+|+|||.+++.+
T Consensus 127 ~fD~i~si~~~eh~~~~--~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 127 PVDRIVSIGAFEHFGHE--RYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp CCSEEEEESCGGGTCTT--THHHHHHHHHHHSCTTCEEEEEE
T ss_pred cccceeeehhhhhcCch--hHHHHHHHHHhhcCCCCcEEEEE
Confidence 89987777777654321 35788999999999999998754
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=97.36 E-value=3.1e-05 Score=74.19 Aligned_cols=105 Identities=24% Similarity=0.351 Sum_probs=68.8
Q ss_pred ccCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCCCchh----HHhhccccchhcccc-cCCCCCCCccchhhc
Q 008748 394 VAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLK----IIYDRGLIGTVHDWC-ESFSTYPRTYDLLHA 467 (555)
Q Consensus 394 ~~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~~~l~----~i~~rgl~g~~~~~c-e~~~typrtydl~h~ 467 (555)
.+....++.|+|++||.|.++.+|... |-...-+ .+-+..+. .+-+.|+..-..--. ..|...|..||++..
T Consensus 75 ~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~--~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~ 152 (253)
T d1tw3a2 75 AYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATV--LEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIIL 152 (253)
T ss_dssp HSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEE--EECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEE
T ss_pred hcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEE--ccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheee
Confidence 455678899999999999999999743 3222111 22233343 345566643222111 224556789999998
Q ss_pred cccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 468 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 468 ~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
.++|-.+... ....+|-++=|.|+|||.++|-|
T Consensus 153 ~~vlh~~~d~--~~~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 153 SFVLLNWPDH--DAVRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp ESCGGGSCHH--HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccCCch--hhHHHHHHHHHhcCCCcEEEEEe
Confidence 8888744221 23578999999999999999865
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.00011 Score=72.16 Aligned_cols=106 Identities=12% Similarity=0.070 Sum_probs=70.8
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHH----HcCCCeEEEEeCCCCC-CCCCCCccEEE
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFAL----ERGIPSTLGVLGTKRL-PYPSRSFELAH 224 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~----~rg~~v~~~~~d~~~L-p~~d~sFDlVv 224 (555)
..+++||-||-|.|..+..+++. +++.+|+++..+..++.-+.. ...+++.+...|+... .-..++||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 34679999999999999999874 567778887766555432221 1246788888885332 22346899999
Q ss_pred eccccccccc----chHHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 225 CSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 225 ~s~~~l~~~~----d~~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
+-. .-.... ....+++.+.+.|+|||.+++-....
T Consensus 157 ~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 195 (285)
T d2o07a1 157 TDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQ 195 (285)
T ss_dssp EEC-C-----------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEeccch
Confidence 632 111111 11458999999999999999865443
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=97.31 E-value=7.6e-05 Score=72.59 Aligned_cols=97 Identities=12% Similarity=0.080 Sum_probs=63.9
Q ss_pred CCcceeEeeccCCcchhhhhccCC---CceEEEecccCCC-CchhHH----hhccccc--hhcccccCCCCCCCccchhh
Q 008748 397 KNTFRNVMDMNSNLGGFAAALKDK---DVWVMNVAPVRMS-ARLKII----YDRGLIG--TVHDWCESFSTYPRTYDLLH 466 (555)
Q Consensus 397 ~~~~rn~~dm~~~~g~faa~l~~~---~~wvmnv~p~~~~-~~l~~i----~~rgl~g--~~~~~ce~~~typrtydl~h 466 (555)
-.+=.+|+|++||.|.++..|.+. .. +|+-+|-. +.|... -+.|+-- +..|. +.++ ++.+||+|+
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~-~~~~-~~~~fD~v~ 99 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLPYDSEFLEGDA-TEIE-LNDKYDIAI 99 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEECCHHHHHHHHHHHHSSSSEEEEEESCT-TTCC-CSSCEEEEE
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCC---EEEEEecchhHhhhhhccccccccccccccccc-cccc-ccCCceEEE
Confidence 345568999999999998777642 22 23333432 333332 2223311 12243 3343 478999999
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 467 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 467 ~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+.++|..+. +...+|-||-|+|+|||++++.|
T Consensus 100 ~~~~l~~~~----d~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 100 CHAFLLHMT----TPETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp EESCGGGCS----SHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EehhhhcCC----CHHHHHHHHHHHcCcCcEEEEEE
Confidence 999987543 36789999999999999999875
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.31 E-value=0.00011 Score=72.91 Aligned_cols=107 Identities=10% Similarity=-0.001 Sum_probs=69.0
Q ss_pred CCCCEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHH----HcCCCeEEEEeCCCCC-CCCCCCccEEE
Q 008748 154 GNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFAL----ERGIPSTLGVLGTKRL-PYPSRSFELAH 224 (555)
Q Consensus 154 ~~~~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~----~rg~~v~~~~~d~~~L-p~~d~sFDlVv 224 (555)
..+++||-||.|.|..+..+++. .|+.+|+++..+..+..-+.. -..+++.+...|.... .-..++||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 34679999999999999999874 577788877665444321111 1135678888885332 22357899999
Q ss_pred eccccccccc----chHHHHHHHHhhcCCCcEEEEEcCCCC
Q 008748 225 CSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEAY 261 (555)
Q Consensus 225 ~s~~~l~~~~----d~~~~L~el~RvLkPGG~lvis~P~~~ 261 (555)
+-. .-.... ....+++.+.+.|+|||.++.-....+
T Consensus 185 ~D~-~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~ 224 (312)
T d2b2ca1 185 TDS-SDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVW 224 (312)
T ss_dssp ECC-C-------------HHHHHHHHEEEEEEEEEECCCTT
T ss_pred EcC-CCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChH
Confidence 632 111111 114589999999999999999765543
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.24 E-value=0.00038 Score=66.18 Aligned_cols=74 Identities=11% Similarity=0.139 Sum_probs=51.6
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEeccccccc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 232 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~ 232 (555)
+..+|||||||+|.++..|++. .++++++++..+.....++ ....++.+..+|+..++++......|+ ++ +.|
T Consensus 21 ~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~--~~~~n~~i~~~D~l~~~~~~~~~~~vv-~N--LPY 95 (235)
T d1qama_ 21 EHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKL--VDHDNFQVLNKDILQFKFPKNQSYKIF-GN--IPY 95 (235)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHT--TTCCSEEEECCCGGGCCCCSSCCCEEE-EE--CCG
T ss_pred CCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHh--hcccchhhhhhhhhhccccccccceee-ee--ehh
Confidence 4568999999999999999973 6889988876553332211 124568999999988887655444455 44 444
Q ss_pred c
Q 008748 233 L 233 (555)
Q Consensus 233 ~ 233 (555)
.
T Consensus 96 n 96 (235)
T d1qama_ 96 N 96 (235)
T ss_dssp G
T ss_pred h
Confidence 3
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.22 E-value=0.00087 Score=63.80 Aligned_cols=123 Identities=11% Similarity=0.108 Sum_probs=78.2
Q ss_pred CCEEEEECCCCcHHHHHHh----cCCCccccCChhhhhHHHHHHHHHcCCC-eEEEEeCCCCCCC---CCCCccEEEecc
Q 008748 156 IRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPY---PSRSFELAHCSR 227 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La----~~~V~~vdis~~dls~a~i~~A~~rg~~-v~~~~~d~~~Lp~---~d~sFDlVv~s~ 227 (555)
..+++|||+|.|.=+..|+ +..++-+|-+..-.. .......+.+.. +.+....++.+.. ..++||+|+|-.
T Consensus 71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~-FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA 149 (239)
T d1xdza_ 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRIT-FLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (239)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHH-HHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHH-HHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence 4689999999997666665 235666766554321 111233444654 5555555554432 135799999643
Q ss_pred cccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEEEEee
Q 008748 228 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 290 (555)
Q Consensus 228 ~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv~~~~ 290 (555)
+.....++.-+...|++||.+++.-... ..++..+.++.++..|+++.....
T Consensus 150 -----va~l~~ll~~~~~~l~~~g~~i~~KG~~------~~~El~~a~~~~~~~~~~~~~v~~ 201 (239)
T d1xdza_ 150 -----VARLSVLSELCLPLVKKNGLFVALKAAS------AEEELNAGKKAITTLGGELENIHS 201 (239)
T ss_dssp -----CSCHHHHHHHHGGGEEEEEEEEEEECC-------CHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred -----hhCHHHHHHHHhhhcccCCEEEEECCCC------hHHHHHHHHHHHHHcCCEEEEEEE
Confidence 2345678999999999999999854332 124455667778888998775443
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.22 E-value=3.2e-05 Score=75.45 Aligned_cols=103 Identities=18% Similarity=0.332 Sum_probs=65.6
Q ss_pred cCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHH----hhccccchhcccc----------cCCCCCC
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKII----YDRGLIGTVHDWC----------ESFSTYP 459 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i----~~rgl~g~~~~~c----------e~~~typ 459 (555)
+.....++|+|++||.|.++..|.+.- + +|+-++-+ +-|.+. -++++-..++.+. ..+ .+.
T Consensus 52 l~~~~~~~vLD~GcG~G~~~~~la~~g-~--~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 127 (292)
T d1xvaa_ 52 LRQHGCHRVLDVACGTGVDSIMLVEEG-F--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV-PAG 127 (292)
T ss_dssp HHHTTCCEEEESSCTTSHHHHHHHHTT-C--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS-CCT
T ss_pred hhhcCCCEEEEecCCCcHHHHHHHHcC-C--eeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccccc-CCC
Confidence 344456789999999999999998763 2 67777754 555543 2334433332221 112 234
Q ss_pred Cccchhhccc-cccccccCCC---ChhhhhhhhcccccCCceEEEe
Q 008748 460 RTYDLLHAWK-VFSEIEERGC---SFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 460 rtydl~h~~~-~~s~~~~~~c---~~~~~~~e~drilrp~g~~i~r 501 (555)
.+||+|-+.+ .|..+..... .+..+|-||-|+|+|||.+|+.
T Consensus 128 ~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 128 DGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp TCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 6899887543 4553322112 2446899999999999999984
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.21 E-value=0.0002 Score=65.55 Aligned_cols=135 Identities=16% Similarity=0.163 Sum_probs=81.3
Q ss_pred cCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----ccccc-----hhcccccCCCCCCCccch
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGLIG-----TVHDWCESFSTYPRTYDL 464 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl~g-----~~~~~ce~~~typrtydl 464 (555)
+....-.+|+|++||.|.++.+|.+.- . +|.-++-. .-+..+-+ .|+-. +..|+-+.+ .+.+||+
T Consensus 48 l~~~~~~~VLDiGcG~G~~~~~la~~~-~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~--~~~~fD~ 122 (194)
T d1dusa_ 48 VVVDKDDDILDLGCGYGVIGIALADEV-K--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV--KDRKYNK 122 (194)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHGGGS-S--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC--TTSCEEE
T ss_pred CCcCCCCeEEEEeecCChhHHHHHhhc-c--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhh--ccCCceE
Confidence 344456789999999999999887542 1 55555543 44444322 24322 123444433 3679999
Q ss_pred hhccccccccccCCCChhhhhhhhcccccCCceEEEec-chhHHHHHHHHHhhcCccceecccccccccCCCCCceEEEE
Q 008748 465 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIA 543 (555)
Q Consensus 465 ~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~ 543 (555)
|-++..|..... .+..++-++.|+|+|||.+++-- ...-...+...++..-+++.+.. + .+.=+||-+
T Consensus 123 Ii~~~p~~~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~---~-----~~gf~vl~a 191 (194)
T d1dusa_ 123 IITNPPIRAGKE---VLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVT---I-----KGGYRVLKS 191 (194)
T ss_dssp EEECCCSTTCHH---HHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEE---E-----ETTEEEEEE
T ss_pred EEEcccEEecch---hhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEE---e-----cCCcEEEEE
Confidence 998887752221 14567888999999999877632 22223455556666656654221 1 234567877
Q ss_pred Ee
Q 008748 544 KK 545 (555)
Q Consensus 544 ~k 545 (555)
+|
T Consensus 192 ~K 193 (194)
T d1dusa_ 192 KK 193 (194)
T ss_dssp EC
T ss_pred EE
Confidence 76
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.15 E-value=0.00011 Score=72.22 Aligned_cols=112 Identities=7% Similarity=0.137 Sum_probs=73.5
Q ss_pred HHHHHHhhhhccCCCcceeEeeccCCcchhhhhcc-CCCceEEEecccCC-CCchh----HHhhccccchhcccccCCCC
Q 008748 384 VVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALK-DKDVWVMNVAPVRM-SARLK----IIYDRGLIGTVHDWCESFST 457 (555)
Q Consensus 384 v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~-~~~~wvmnv~p~~~-~~~l~----~i~~rgl~g~~~~~ce~~~t 457 (555)
++...+.++ |+.|. .|+|++||.||+|..|. ..++=| +=++- ++++. .+-+.||....+--+.-+.+
T Consensus 50 ~~~~~~~l~--l~~G~--~VLDiGCG~G~~~~~~a~~~g~~v---~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~ 122 (291)
T d1kpia_ 50 RKLALDKLN--LEPGM--TLLDIGCGWGSTMRHAVAEYDVNV---IGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE 122 (291)
T ss_dssp HHHHHHTTC--CCTTC--EEEEETCTTSHHHHHHHHHHCCEE---EEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG
T ss_pred HHHHHHhcC--CCCCC--EEEEecCcchHHHHHHHHhcCcce---eeccchHHHHHHHHHHHHhhccchhhhhhhhcccc
Confidence 344444443 44444 69999999999998775 346533 33332 24444 35566887766555555555
Q ss_pred CCCccchhhccccccccccC-----CCChhhhhhhhcccccCCceEEEec
Q 008748 458 YPRTYDLLHAWKVFSEIEER-----GCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 458 yprtydl~h~~~~~s~~~~~-----~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
.+-+||-|=+.+.|-+.... .=+...++=++.|+|+|||.+++.+
T Consensus 123 ~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 123 FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 56789988777777754321 0124678999999999999998763
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=0.00027 Score=68.11 Aligned_cols=93 Identities=15% Similarity=0.169 Sum_probs=59.7
Q ss_pred CCcceeEeeccCCcchhhhhccCC-CceEEEecccCC-CCchhHHhhccc-cchhcccccCCCCCCCccchhhccccccc
Q 008748 397 KNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGL-IGTVHDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 397 ~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~-~~~l~~i~~rgl-~g~~~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
..+-..|+|++||.|.|+.+|.+. |-+ +|+=+|- +.-|...-+|+- +.....=.+.++.-+.+||+|.+...+.
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~--~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~- 158 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALPEI--TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC- 158 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCTTS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC-
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCCCC--EEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHH-
Confidence 345668999999999999998754 322 2333443 355555555432 1112222345555568999998654332
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEec
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
-+-||.|+|||||.+++-.
T Consensus 159 ----------~~~e~~rvLkpgG~l~~~~ 177 (268)
T d1p91a_ 159 ----------KAEELARVVKPGGWVITAT 177 (268)
T ss_dssp ----------CHHHHHHHEEEEEEEEEEE
T ss_pred ----------HHHHHHHHhCCCcEEEEEe
Confidence 1468999999999999864
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=8.2e-05 Score=71.73 Aligned_cols=96 Identities=13% Similarity=0.197 Sum_probs=60.6
Q ss_pred eEeeccCCcchhhhhccCC-----CceEEEecccCCC-CchhHHhhc-----cccchhcccccC----------CCCCCC
Q 008748 402 NVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMS-ARLKIIYDR-----GLIGTVHDWCES----------FSTYPR 460 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~-----~~wvmnv~p~~~~-~~l~~i~~r-----gl~g~~~~~ce~----------~~typr 460 (555)
+|||++||.|.|+..|.+. +--...++=++.. ..|...-+| .+-.+--+|... .+.=+.
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQ 122 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCC
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCC
Confidence 6999999999997766431 2222344545533 344433332 222222233211 111257
Q ss_pred ccchhhccccccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 461 TYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 461 tydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
+||+|++.++|-... ++..+|-+|-|+|+|||.++|-
T Consensus 123 ~fD~I~~~~~l~~~~----d~~~~l~~l~~~LkpgG~l~i~ 159 (280)
T d1jqea_ 123 KWDFIHMIQMLYYVK----DIPATLKFFHSLLGTNAKMLII 159 (280)
T ss_dssp CEEEEEEESCGGGCS----CHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceeEEEEccceecCC----CHHHHHHHHHhhCCCCCEEEEE
Confidence 999999999988432 4789999999999999988764
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.12 E-value=0.00044 Score=63.05 Aligned_cols=91 Identities=19% Similarity=0.202 Sum_probs=60.4
Q ss_pred CCCEEEEECCCCcHHHHHHhcC-----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--------CCCCCcc
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFE 221 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~-----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--------~~d~sFD 221 (555)
+..+|||+||+.|+|+.++.+. .++++|+.+.. ....+.+..+|..... ...+.||
T Consensus 22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-----------~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T d1ej0a_ 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-----------PIVGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-----------CCTTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc-----------ccCCceEeecccccchhhhhhhhhccCccee
Confidence 3468999999999999988752 57777776532 1345666777654321 2346799
Q ss_pred EEEecccccccccc----h-------HHHHHHHHhhcCCCcEEEEEc
Q 008748 222 LAHCSRCRIDWLQR----D-------GILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 222 lVv~s~~~l~~~~d----~-------~~~L~el~RvLkPGG~lvis~ 257 (555)
+|+|-. +.....+ . ...+.-+.++|++||.|++-.
T Consensus 91 lVlSD~-ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~ 136 (180)
T d1ej0a_ 91 VVMSDM-APNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp EEEECC-CCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEecc-cchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence 999743 2222211 1 225667789999999999855
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=97.12 E-value=9.8e-05 Score=68.89 Aligned_cols=97 Identities=12% Similarity=0.134 Sum_probs=73.7
Q ss_pred eEeeccCCcchhhhhccC---CCceEEEecccCCC-CchhHHhh----ccccchhcccccCCCCCC-Cccchhhcccccc
Q 008748 402 NVMDMNSNLGGFAAALKD---KDVWVMNVAPVRMS-ARLKIIYD----RGLIGTVHDWCESFSTYP-RTYDLLHAWKVFS 472 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~---~~~wvmnv~p~~~~-~~l~~i~~----rgl~g~~~~~ce~~~typ-rtydl~h~~~~~s 472 (555)
.|+|++||.|..+.+|.. .|-+ +|+=+|-+ .-|.+.-+ .+....+|-.|..+..+| ..+|++.+..+|.
T Consensus 42 ~vLDlGCGtG~~~~~l~~~~~~~~~--~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l~ 119 (225)
T d1im8a_ 42 NVYDLGCSRGAATLSARRNINQPNV--KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ 119 (225)
T ss_dssp EEEEESCTTCHHHHHHHHTCCCSSC--EEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCGG
T ss_pred EEEEeccchhhHHHHHHHhhcCCCC--ceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeecc
Confidence 699999999998877753 3443 67777754 66666544 478888888888877777 4889999888876
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
.+.. =+...+|-||=|.|+|||.+|+.|
T Consensus 120 ~~~~--~d~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 120 FLPP--EDRIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp GSCG--GGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCh--hhHHHHHHHHHHhCCCCceeeccc
Confidence 4321 146689999999999999999975
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.12 E-value=4.8e-05 Score=73.12 Aligned_cols=82 Identities=11% Similarity=0.158 Sum_probs=57.3
Q ss_pred HHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCC
Q 008748 135 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR 212 (555)
Q Consensus 135 y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~ 212 (555)
..+.+.+.+.. .+..+|||||||+|.++..|++. .++++|++...+......+ ....++.+..+|+..
T Consensus 17 ii~kIv~~~~~--------~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~--~~~~n~~ii~~D~l~ 86 (245)
T d1yuba_ 17 VLNQIIKQLNL--------KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKL--KLNTRVTLIHQDILQ 86 (245)
T ss_dssp THHHHHHHCCC--------CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTT--TTCSEEEECCSCCTT
T ss_pred HHHHHHHhcCC--------CCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhh--hhccchhhhhhhhhc
Confidence 34455665543 23468999999999999999863 7899999887653332111 112467888999988
Q ss_pred CCCCCCCccEEEec
Q 008748 213 LPYPSRSFELAHCS 226 (555)
Q Consensus 213 Lp~~d~sFDlVv~s 226 (555)
++++...++.|+++
T Consensus 87 ~~~~~~~~~~vv~N 100 (245)
T d1yuba_ 87 FQFPNKQRYKIVGN 100 (245)
T ss_dssp TTCCCSSEEEEEEE
T ss_pred cccccceeeeEeee
Confidence 88887777777744
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=0.00064 Score=63.39 Aligned_cols=94 Identities=15% Similarity=0.040 Sum_probs=65.6
Q ss_pred CEEEEECCCCcHHHHHHh----cCCCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCCCCCCCccEEEecccccc
Q 008748 157 RNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRID 231 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La----~~~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~ 231 (555)
.+|||+|+|.|.=+..|+ +..++.+|-...-+.- ..+.+++.+. ++.+....++.+.. +.+||+|+|-. +
T Consensus 67 ~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~F-L~~~~~~L~L~nv~v~~~R~E~~~~-~~~fD~V~sRA-~-- 141 (207)
T d1jsxa_ 67 ERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRF-LRQVQHELKLENIEPVQSRVEEFPS-EPPFDGVISRA-F-- 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHH-HHHHHHHTTCSSEEEEECCTTTSCC-CSCEEEEECSC-S--
T ss_pred CceeeeeccCCceeeehhhhcccceEEEEecchHHHHH-HHHHHHHcCCcceeeeccchhhhcc-ccccceehhhh-h--
Confidence 489999999997666665 2367777776654322 2234455565 57777777877653 46899998543 2
Q ss_pred cccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 232 WLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 232 ~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
.+...++.-+...+++||.+++.-
T Consensus 142 --~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 142 --ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp --SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred --cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 344678888999999999999854
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=97.07 E-value=5.8e-05 Score=71.94 Aligned_cols=107 Identities=16% Similarity=0.175 Sum_probs=65.8
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----ccc---ch-hcccccCCCC-CCCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GLI---GT-VHDWCESFST-YPRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl~---g~-~~~~ce~~~t-yprtydl~h~~~~ 470 (555)
.+|||++||.|+++..+.+...- +|+=+|-+ ..|...-+| |.. -. ..|- ...+. -..+||+|.+...
T Consensus 26 ~~VLDlGCG~G~~~~~~~~~~~~--~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~-~~~~~~~~~~fD~V~~~~~ 102 (252)
T d1ri5a_ 26 DSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS-YGRHMDLGKEFDVISSQFS 102 (252)
T ss_dssp CEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCT-TTSCCCCSSCEEEEEEESC
T ss_pred CEEEEecccCcHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcch-hhhcccccccceEEEEcce
Confidence 47999999999998888764432 45556643 666666554 211 11 1222 11222 2458999987665
Q ss_pred ccccccCCCChhhhhhhhcccccCCceEEEe--cchhHHHHH
Q 008748 471 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIR--DKSSIINYI 510 (555)
Q Consensus 471 ~s~~~~~~c~~~~~~~e~drilrp~g~~i~r--d~~~~~~~~ 510 (555)
+-..-...=.+..+|-+|-|+|+|||.+|+- |...++..+
T Consensus 103 l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~ 144 (252)
T d1ri5a_ 103 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERY 144 (252)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHH
T ss_pred eeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHH
Confidence 5422111113567899999999999999963 433444433
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.95 E-value=0.00073 Score=66.81 Aligned_cols=126 Identities=19% Similarity=0.191 Sum_probs=78.9
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCCCCCCCccEEEe----c
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHC----S 226 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp~~d~sFDlVv~----s 226 (555)
+.+|||+.||.|+=+..+++ ..+++.|++..-+.....+..+-...++.+...|...++..++.||.|++ +
T Consensus 117 g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDaPCS 196 (313)
T d1ixka_ 117 GEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCT 196 (313)
T ss_dssp TCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECCTT
T ss_pred cceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEccccc
Confidence 46899999999987666653 24788888876554443333332234455555666666666678999996 2
Q ss_pred cc-ccc------c--cc-c-------hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 227 RC-RID------W--LQ-R-------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 227 ~~-~l~------~--~~-d-------~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
.. ++. | .. + ...+|....+.|||||+++.++-.... .|+. ..+..++++.+++++
T Consensus 197 g~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~--eENE---~VV~~~L~~~~~~~~ 268 (313)
T d1ixka_ 197 GSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP--EENE---FVIQWALDNFDVELL 268 (313)
T ss_dssp STTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG--GGTH---HHHHHHHHHSSEEEE
T ss_pred cCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCCh--HhHH---HHHHHHHhcCCCEEe
Confidence 11 111 1 11 1 133788999999999999998866432 2222 345566777777665
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=96.94 E-value=0.00014 Score=66.51 Aligned_cols=93 Identities=20% Similarity=0.304 Sum_probs=65.5
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-CchhH----Hhhcccc---chhcccccCCCCCCCccchhhccccccc
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRGLI---GTVHDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~----i~~rgl~---g~~~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
.|+|++||.|.++..|.+.- | .|+-++-. ..|.. +-+.|+- ....|.++. .++.+||+|.+..+|..
T Consensus 33 rvLDiGcG~G~~~~~la~~g-~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~--~~~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAANG-Y--DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTL--TFDGEYDFILSTVVMMF 107 (198)
T ss_dssp EEEEETCTTSHHHHHHHHTT-C--EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTC--CCCCCEEEEEEESCGGG
T ss_pred cEEEECCCCCHHHHHHHHHh-h--hhccccCcHHHHHHHHHHhhhccccchhhhheecccc--cccccccEEEEeeeeec
Confidence 59999999999999998763 2 45545533 44443 3344543 233444443 35789999999999885
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEe
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
+.. =....+|=++-|.|+|||.+++.
T Consensus 108 ~~~--~~~~~~l~~~~~~L~pgG~~~~~ 133 (198)
T d2i6ga1 108 LEA--QTIPGLIANMQRCTKPGGYNLIV 133 (198)
T ss_dssp SCT--THHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCH--HHHHHHHHHHHHHcCCCcEEEEE
Confidence 432 24678999999999999999885
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=96.91 E-value=8.5e-05 Score=71.39 Aligned_cols=106 Identities=22% Similarity=0.264 Sum_probs=69.7
Q ss_pred ccCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCCCchh----HHhhccccchhcccc-cCCCCCCCccchhhc
Q 008748 394 VAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLK----IIYDRGLIGTVHDWC-ESFSTYPRTYDLLHA 467 (555)
Q Consensus 394 ~~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~~~l~----~i~~rgl~g~~~~~c-e~~~typrtydl~h~ 467 (555)
.++...++.|+|++||.|.++++|.+. |- ++++=.+-+..+. .+-+.|+-....-.. ..|..-|-+||++..
T Consensus 76 ~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~--~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~ 153 (256)
T d1qzza2 76 AYDWSAVRHVLDVGGGNGGMLAAIALRAPH--LRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLL 153 (256)
T ss_dssp TSCCTTCCEEEEETCTTSHHHHHHHHHCTT--CEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEE
T ss_pred cCCCccCCEEEEECCCCCHHHHHHHHhhcC--cEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhc
Confidence 345678999999999999999999753 32 1233233333333 355666644221111 134445778999998
Q ss_pred cccccccccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 468 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 468 ~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
.++|-.+... ....||-++=|.|+|||.++|-|.
T Consensus 154 ~~vLh~~~d~--~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 154 SFVLLNWSDE--DALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp ESCGGGSCHH--HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccccCcH--HHHHHHHHHHhhcCCcceeEEEEe
Confidence 8888644321 235678899999999999998765
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.90 E-value=0.00032 Score=68.90 Aligned_cols=114 Identities=15% Similarity=0.059 Sum_probs=69.3
Q ss_pred HHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCC----CchhHHhhcccc---chhccccc
Q 008748 382 VRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS----ARLKIIYDRGLI---GTVHDWCE 453 (555)
Q Consensus 382 ~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~----~~l~~i~~rgl~---g~~~~~ce 453 (555)
.|.+.|.+.+.......+=.+|||++||.|.++..+... ..-| +-++.. .....+-..|+. =+.+.-.+
T Consensus 18 ~r~~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V---~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~ 94 (311)
T d2fyta1 18 IRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKV---LGVDQSEILYQAMDIIRLNKLEDTITLIKGKIE 94 (311)
T ss_dssp HHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEE---EEEESSTHHHHHHHHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEE---EEEeCHHHHHHHHHHHHHhCCCccceEEEeeHH
Confidence 455567776643222222346999999999987665533 2223 333332 223456666663 33444445
Q ss_pred CCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEE
Q 008748 454 SFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVI 499 (555)
Q Consensus 454 ~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i 499 (555)
.+..-+..+|+|=+.-+++.+.. .-.+..++-.++|.|+|||.+|
T Consensus 95 ~l~~~~~~~D~Ivse~~~~~~~~-e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 95 EVHLPVEKVDVIISEWMGYFLLF-ESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp TSCCSCSCEEEEEECCCBTTBTT-TCHHHHHHHHHHHHEEEEEEEE
T ss_pred HhcCccccceEEEEeeeeeeccc-ccccHHHHHHHHhcCCCCcEEe
Confidence 55555689999987665553221 1236677778999999999998
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.76 E-value=0.00095 Score=63.24 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=59.2
Q ss_pred CCEEEEECCCCcHHHHHHhc--------CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC----CCCCCccEE
Q 008748 156 IRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP----YPSRSFELA 223 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~--------~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp----~~d~sFDlV 223 (555)
+.+||+||++.|..+..++. ..++++|+.+.... .+.....++.+..+|..... +....+|+|
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~-----~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlI 155 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQ-----IPASDMENITLHQGDCSDLTTFEHLREMAHPLI 155 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCC-----CCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhh-----hhhccccceeeeecccccHHHHHHHHhcCCCEE
Confidence 46899999999976665542 36888888654321 11223467888888864432 334568888
Q ss_pred EecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 224 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 224 v~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
+.-. . |.......-+ ++..+|++||++++-+
T Consensus 156 fID~-~-H~~~~v~~~~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 156 FIDN-A-HANTFNIMKW-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp EEES-S-CSSHHHHHHH-HHHHTCCTTCEEEECS
T ss_pred EEcC-C-cchHHHHHHH-HHhcccCcCCEEEEEc
Confidence 7432 2 2222211122 4668999999999954
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=96.72 E-value=0.0015 Score=59.33 Aligned_cols=99 Identities=13% Similarity=0.118 Sum_probs=63.1
Q ss_pred CEEEEECCCCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCC---CeEEEEeCC---CCCCCCCCCccEEEecc
Q 008748 157 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGT---KRLPYPSRSFELAHCSR 227 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~---~v~~~~~d~---~~Lp~~d~sFDlVv~s~ 227 (555)
.+|||+-||||.++...+.+ .++.+|.+...+.....+ +...+. ...+...|. .........||+|++--
T Consensus 45 ~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~N-i~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDP 123 (183)
T d2ifta1 45 SECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKN-LQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 123 (183)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHH-HHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred ceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhH-HhhhcccccccccccccccccccccccCCcccEEEech
Confidence 48999999999999998875 688888887765444433 233322 244444442 22233445799998542
Q ss_pred cccccccc-hHHHHHHHHh--hcCCCcEEEEEcCC
Q 008748 228 CRIDWLQR-DGILLLELDR--LLRPGGYFVYSSPE 259 (555)
Q Consensus 228 ~~l~~~~d-~~~~L~el~R--vLkPGG~lvis~P~ 259 (555)
+|..+ ...++..+.. +|+++|++++-.+.
T Consensus 124 ---PY~~~~~~~~l~~l~~~~~L~~~~liiiE~~~ 155 (183)
T d2ifta1 124 ---PFHFNLAEQAISLLCENNWLKPNALIYVETEK 155 (183)
T ss_dssp ---CSSSCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred ---hHhhhhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence 23222 2446666544 79999999986543
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.67 E-value=0.0018 Score=66.30 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=75.8
Q ss_pred HHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc-----------------CCCccccCChhhhhHHHHHHH
Q 008748 134 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----------------HDIIAMSLAPNDVHENQIQFA 196 (555)
Q Consensus 134 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~-----------------~~V~~vdis~~dls~a~i~~A 196 (555)
...+.+.+++.. ....+|||-.||+|.|...+.+ ..+.|+|+++.....+..+..
T Consensus 149 ~Iv~~mv~ll~~--------~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~ 220 (425)
T d2okca1 149 PLIQAMVDCINP--------QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 220 (425)
T ss_dssp HHHHHHHHHHCC--------CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred hhhHhhheeccC--------cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhh
Confidence 345566666642 2346899999999999877653 146688888877766665554
Q ss_pred HHcC--CCeEEEEeCCCCCCCCCCCccEEEecccccccc----------------c-chHHHHHHHHhhcCCCcEEEEEc
Q 008748 197 LERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL----------------Q-RDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 197 ~~rg--~~v~~~~~d~~~Lp~~d~sFDlVv~s~~~l~~~----------------~-d~~~~L~el~RvLkPGG~lvis~ 257 (555)
.... ....+...|.... .+...||+|+++-- .... . ....++..+.+.|++||.++++.
T Consensus 221 l~g~~~~~~~i~~~d~l~~-~~~~~fD~Ii~NPP-fg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~ 298 (425)
T d2okca1 221 LHGIGTDRSPIVCEDSLEK-EPSTLVDVILANPP-FGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 298 (425)
T ss_dssp HTTCCSSCCSEEECCTTTS-CCSSCEEEEEECCC-SSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCCccccceeecCchhhh-hcccccceEEecCC-CCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEe
Confidence 4321 1234555554433 33468999997531 1100 0 01348999999999999999999
Q ss_pred CCC
Q 008748 258 PEA 260 (555)
Q Consensus 258 P~~ 260 (555)
|..
T Consensus 299 p~~ 301 (425)
T d2okca1 299 PDN 301 (425)
T ss_dssp EHH
T ss_pred chH
Confidence 863
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=96.58 E-value=0.00033 Score=67.41 Aligned_cols=109 Identities=16% Similarity=0.140 Sum_probs=67.6
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCC-CCchhHH----hhccccchh--cccccCCCCCCCccchhhccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKII----YDRGLIGTV--HDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~-~~~l~~i----~~rgl~g~~--~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
..|+|++||.|.++.++...-. .|+-+|- +.-+... -..|+-..+ .|.-+.++ ..+||+|.|+-++..
T Consensus 122 ~~VLDiGcGsG~l~i~aa~~g~---~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~--~~~fD~V~ani~~~~ 196 (254)
T d2nxca1 122 DKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALP--FGPFDLLVANLYAEL 196 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGG--GCCEEEEEEECCHHH
T ss_pred CEEEEcccchhHHHHHHHhcCC---EEEEEECChHHHHHHHHHHHHcCCceeEEecccccccc--ccccchhhhcccccc
Confidence 3799999999999877764421 3444443 2333332 223442111 12222222 258999998754442
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEecc-hhHHHHHHHHHhhcCccc
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWDG 521 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~rd~-~~~~~~~~~~~~~~~w~~ 521 (555)
+..++=++-|+|+|||.+|+.+- .+-.+.|.+.+....|+.
T Consensus 197 -------l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~ 238 (254)
T d2nxca1 197 -------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRP 238 (254)
T ss_dssp -------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEE
T ss_pred -------HHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEE
Confidence 56677789999999999998642 223567777788888876
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.58 E-value=0.0007 Score=66.66 Aligned_cols=111 Identities=18% Similarity=0.181 Sum_probs=66.0
Q ss_pred HHHHHHHhhhh--ccCCCcceeEeeccCCcchhhhhccCC-CceEEEecccCCC----CchhHHhhccccc---hhcccc
Q 008748 383 RVVDYWKQMKT--VAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS----ARLKIIYDRGLIG---TVHDWC 452 (555)
Q Consensus 383 ~v~~y~~~~~~--~~~~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~----~~l~~i~~rgl~g---~~~~~c 452 (555)
|...|.+.+.. .+..+ .+|||++||.|.++-.+.+. .--|. -++.. ....++-..|+.. +.+.--
T Consensus 17 R~~~y~~ai~~~~~~~~~--~~VLDiGcG~G~ls~~aa~~Ga~~V~---avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~ 91 (316)
T d1oria_ 17 RTLTYRNSMFHNRHLFKD--KVVLDVGSGTGILCMFAAKAGARKVI---GIECSSISDYAVKIVKANKLDHVVTIIKGKV 91 (316)
T ss_dssp HHHHHHHHHHTCHHHHTT--CEEEEETCTTSHHHHHHHHTTCSEEE---EEECSTTHHHHHHHHHHTTCTTTEEEEESCT
T ss_pred HHHHHHHHHHhccccCCc--CEEEEEecCCcHHHHHHHHhCCCEEE---EEcCcHHHhhhhhHHHHhCCccccceEeccH
Confidence 44557665521 12233 46999999999875444332 22232 22322 2233455567643 333334
Q ss_pred cCCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEE
Q 008748 453 ESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVI 499 (555)
Q Consensus 453 e~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i 499 (555)
+.+..-+..+|+|-+.-+...+. ..-.++.++-+++|.|+|||.+|
T Consensus 92 ~~~~~~~~~~D~ivs~~~~~~l~-~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 92 EEVELPVEKVDIIISEWMGYCLF-YESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp TTCCCSSSCEEEEEECCCBBTBT-BTCCHHHHHHHHHHHEEEEEEEE
T ss_pred HHcccccceeEEEeeeeeeeeec-cHHHHHHHHHHHHhcCCCCeEEE
Confidence 44555557999997765544222 22457889999999999999998
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=96.56 E-value=0.0046 Score=56.16 Aligned_cols=119 Identities=17% Similarity=0.093 Sum_probs=77.4
Q ss_pred CCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCCCCC-----CCCCCccEEEec
Q 008748 155 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLP-----YPSRSFELAHCS 226 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~~Lp-----~~d~sFDlVv~s 226 (555)
++..++|..+|.|..+..+++. .|+|+|.++.++ ..+.+. .....+...+...+. +..+.+|.|+.-
T Consensus 18 ~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai-----~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~D 92 (182)
T d1wg8a2 18 PGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAV-----ARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILAD 92 (182)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHH-----HHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred CCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHH-----HHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEEEE
Confidence 3468999999999999999875 688888877665 333333 345777777655432 334679999863
Q ss_pred cccccc-ccc-------hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcCcEEE
Q 008748 227 RCRIDW-LQR-------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 286 (555)
Q Consensus 227 ~~~l~~-~~d-------~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~gw~vv 286 (555)
..+..+ ..+ ....|.....+|+|||.+++.+-.. .+ -+.+.+.+++.+++.+
T Consensus 93 LGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs----~E----d~ivk~~~~e~~~k~i 152 (182)
T d1wg8a2 93 LGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS----LE----DRVVKRFLRESGLKVL 152 (182)
T ss_dssp CSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH----HH----HHHHHHHHHHHCSEES
T ss_pred ccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc----ch----hHHHHHHHhhccceec
Confidence 321111 111 1336888899999999999876431 12 1345666777666543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=96.51 E-value=0.0013 Score=61.51 Aligned_cols=94 Identities=19% Similarity=0.282 Sum_probs=61.6
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc----cccchhc--ccccCCCCCCCccchhhcc-cccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GLIGTVH--DWCESFSTYPRTYDLLHAW-KVFS 472 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r----gl~g~~~--~~ce~~~typrtydl~h~~-~~~s 472 (555)
++|||++||.|.++-.|.+... +|+=+|.+ .-|.+.-+| |+--.++ |..+ |+. +++||+|=+. +.|.
T Consensus 39 ~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~-~~~-~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 39 DDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISN-LNI-NRKFDLITCCLDSTN 113 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGG-CCC-SCCEEEEEECTTGGG
T ss_pred CeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceeeccchhh-hcc-cccccccceeeeeee
Confidence 5799999999999999987643 56667754 556655443 4321111 3332 343 6899987432 3333
Q ss_pred ccccCCCChhhhhhhhcccccCCceEEE
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVII 500 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i~ 500 (555)
.+.. .=.+..+|-+|-|.|+|||.+|+
T Consensus 114 ~~~~-~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 114 YIID-SDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GCCS-HHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccCC-HHHHHHHHHHHHHhCCCCeEEEE
Confidence 2211 11366789999999999999996
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.48 E-value=0.00083 Score=63.41 Aligned_cols=134 Identities=10% Similarity=0.233 Sum_probs=74.6
Q ss_pred eEeeccCCcchhhhhccCC-----CceEEEecccCCCCchhHHhhccc-cchhcccccC--CCCCCCccchhhccccccc
Q 008748 402 NVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDRGL-IGTVHDWCES--FSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~-----~~wvmnv~p~~~~~~l~~i~~rgl-~g~~~~~ce~--~~typrtydl~h~~~~~s~ 473 (555)
.|+|++||.|+++.+|.+. .|+..-.-|.-........-.|+. ..+..|=..+ +....-.+|.++.+-...
T Consensus 76 ~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~~~- 154 (227)
T d1g8aa_ 76 SVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQP- 154 (227)
T ss_dssp EEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCST-
T ss_pred EEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEEcccc-
Confidence 6999999999999999742 344443333222223334445553 3333333222 111223556655432111
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEe----------cchhHHHHHHHHHhhcCccceecccccccccCCCCCceEEEE
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIR----------DKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIA 543 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~r----------d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~ 543 (555)
=....++-++.|.|+|||.++|- +...+..+++++... .++.. ..+ +-+|+. .+.-++|+
T Consensus 155 -----~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~ii-e~i--~L~p~~-~~H~~vv~ 224 (227)
T d1g8aa_ 155 -----TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVI-ERL--NLEPYE-KDHALFVV 224 (227)
T ss_dssp -----THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEE-EEE--ECTTTS-SSEEEEEE
T ss_pred -----chHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEE-EEE--cCCCCC-CceEEEEE
Confidence 12456899999999999999985 224556677776654 55541 122 123332 23467888
Q ss_pred Eec
Q 008748 544 KKK 546 (555)
Q Consensus 544 ~k~ 546 (555)
+|+
T Consensus 225 rK~ 227 (227)
T d1g8aa_ 225 RKT 227 (227)
T ss_dssp ECC
T ss_pred EeC
Confidence 885
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.46 E-value=0.00099 Score=61.91 Aligned_cols=101 Identities=15% Similarity=0.154 Sum_probs=60.1
Q ss_pred ccCCCcceeEeeccCCcchhhhhccCC--CceEEEecccCC-CCchh----HHhhccccchhcccccCCCCCCCccchhh
Q 008748 394 VAQKNTFRNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLK----IIYDRGLIGTVHDWCESFSTYPRTYDLLH 466 (555)
Q Consensus 394 ~~~~~~~rn~~dm~~~~g~faa~l~~~--~~wvmnv~p~~~-~~~l~----~i~~rgl~g~~~~~ce~~~typrtydl~h 466 (555)
.|+.|. .|+|++||.|+++.+|.+. .. -|+-++- +.-+. ..-.|+.+-..+-=++....|+..+|.+
T Consensus 53 ~lkpg~--~VLDlGcG~G~~~~~la~~v~~g---~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v- 126 (209)
T d1nt2a_ 53 KLRGDE--RVLYLGAASGTTVSHLADIVDEG---IIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKV- 126 (209)
T ss_dssp CCCSSC--EEEEETCTTSHHHHHHHHHTTTS---EEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCE-
T ss_pred CCCCCC--EEEEeCCcCCHHHHHHHHhccCC---eEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceE-
Confidence 345544 7999999999998888642 11 1333332 22222 3344565544444344445566655543
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCceEEEec
Q 008748 467 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 467 ~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
+-+|..+.. .-....++.|+.|+|+|||.++|-+
T Consensus 127 -d~v~~~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 127 -DLIYQDIAQ-KNQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp -EEEEECCCS-TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -EEEEecccC-hhhHHHHHHHHHHHhccCCeEEEEE
Confidence 334443222 2346678999999999999998854
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.45 E-value=0.00035 Score=65.54 Aligned_cols=99 Identities=13% Similarity=0.118 Sum_probs=59.9
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhcc------ccchhcccccCCCCCC-Cccchhhcccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRG------LIGTVHDWCESFSTYP-RTYDLLHAWKVFS 472 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rg------l~g~~~~~ce~~~typ-rtydl~h~~~~~s 472 (555)
.+|||++||.|.+|.+|.+... -+|+-++-. ..+.+.-++. +..+.+++.+-....| .+||++--+...+
T Consensus 55 ~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~ 132 (229)
T d1zx0a1 55 GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL 132 (229)
T ss_dssp EEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred CeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccccc
Confidence 5799999999999999987643 245555533 4555443332 2333455544444444 3677764333332
Q ss_pred cc-ccCCCChhhhhhhhcccccCCceEEEe
Q 008748 473 EI-EERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 473 ~~-~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
.. ..+.-....++-|+=|+|||||.+++-
T Consensus 133 ~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 133 SEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp BGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 11 111123456888999999999999874
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.39 E-value=0.019 Score=54.41 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=61.5
Q ss_pred CEEEEECCCCcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCC-eEEEEe-CCCCCCCCCCCccEEEeccccc
Q 008748 157 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP-STLGVL-GTKRLPYPSRSFELAHCSRCRI 230 (555)
Q Consensus 157 ~~VLDIGCGtG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~-v~~~~~-d~~~Lp~~d~sFDlVv~s~~~l 230 (555)
.+|+|+|||.|+++.+++.. .+.+.++- .+.++.-+. ....+-+ +.+... ++.. .+.+..|+|+|--. -
T Consensus 68 ~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG-~d~~e~P~~-~~~~~~ni~~~~~~~dv~~--l~~~~~D~vlcDm~-e 142 (257)
T d2p41a1 68 GKVVDLGCGRGGWSYYCGGLKNVREVKGLTKG-GPGHEEPIP-MSTYGWNLVRLQSGVDVFF--IPPERCDTLLCDIG-E 142 (257)
T ss_dssp EEEEEETCTTSHHHHHHHTSTTEEEEEEECCC-STTSCCCCC-CCSTTGGGEEEECSCCTTT--SCCCCCSEEEECCC-C
T ss_pred CeEEEecCCCChHHHHHHhhcCCCceeEEEec-CccccCCcc-ccccccccccchhhhhHHh--cCCCcCCEEEeeCC-C
Confidence 47999999999999999864 23444442 111110000 0000111 122222 2222 34577999998542 1
Q ss_pred ccccch-------HHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHhcC
Q 008748 231 DWLQRD-------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC 282 (555)
Q Consensus 231 ~~~~d~-------~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~~g 282 (555)
+ ..++ -.++.-+.+.|+|||.|++-+-.+| .+ +..+.++.+-...|
T Consensus 143 s-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py--~~---~v~e~le~lq~~fg 195 (257)
T d2p41a1 143 S-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY--MS---SVIEKMEALQRKHG 195 (257)
T ss_dssp C-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC--SH---HHHHHHHHHHHHHC
T ss_pred C-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCC--Ch---HHHHHHHHHHHHhC
Confidence 1 2221 1367777799999999998654432 22 33445555555544
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.34 E-value=0.0026 Score=61.77 Aligned_cols=125 Identities=15% Similarity=0.158 Sum_probs=76.1
Q ss_pred CCCEEEEECCCCcHHHHHHhc----CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--CCCCCccEEEe---
Q 008748 155 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHC--- 225 (555)
Q Consensus 155 ~~~~VLDIGCGtG~~a~~La~----~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--~~d~sFDlVv~--- 225 (555)
...+|||+.+|.|+=+..|++ ..|+++|++..-+.... +.....|......+.+..... ...+.||.|++
T Consensus 102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~-~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~DaP 180 (284)
T d1sqga2 102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVY-DNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP 180 (284)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHH-HHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHh-hhhhcccccceeeeccccccchhcccccccEEEEecc
Confidence 346899999999987777764 25888898887664443 444455666555544433221 23467999996
Q ss_pred -ccc-ccccccc----------------hHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHHHHHHHHHHh-cCcEE
Q 008748 226 -SRC-RIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS-MCWKI 285 (555)
Q Consensus 226 -s~~-~l~~~~d----------------~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~~~l~~l~~~-~gw~v 285 (555)
|.. ++...++ ...+|..+.+.|||||+++.++=... ..|+. ..++.++++ .+|++
T Consensus 181 CSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~--~~ENE---~vv~~~l~~~~~~~~ 254 (284)
T d1sqga2 181 CSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL--PEENS---LQIKAFLQRTADAEL 254 (284)
T ss_dssp CCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC--GGGTH---HHHHHHHHHCTTCEE
T ss_pred ccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc--hhhCH---HHHHHHHHhCCCcEE
Confidence 211 1111111 13378899999999999999886542 22222 244555554 34543
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.28 E-value=0.0011 Score=65.60 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=59.8
Q ss_pred eeEeeccCCcchhhhhccCCC-ceEEEecccCCCC----chhHHhhccccch---hcccccCCCCCCCccchhhcccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKD-VWVMNVAPVRMSA----RLKIIYDRGLIGT---VHDWCESFSTYPRTYDLLHAWKVFS 472 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~-~wvmnv~p~~~~~----~l~~i~~rgl~g~---~~~~ce~~~typrtydl~h~~~~~s 472 (555)
.+|||++||.|.++..+.... .- |+-++... ....+-..|+... ++.-.+.++.-+..+|+|-+.-++.
T Consensus 40 ~~VLDlGcGtG~ls~~aa~~Ga~~---V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 40 KIVLDVGCGTGILSMFAAKHGAKH---VIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCCSE---EEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCE---EEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 369999999998765554331 12 22233222 2335667777543 3333444444357999998766655
Q ss_pred ccccCCCChhhhhhhhcccccCCceEE
Q 008748 473 EIEERGCSFEDLLIEMDRMLRPEGFVI 499 (555)
Q Consensus 473 ~~~~~~c~~~~~~~e~drilrp~g~~i 499 (555)
.+. .--.+..++.+++|+|+|||.+|
T Consensus 117 ~~~-~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 117 FLL-YESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBS-TTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eec-cchhHHHHHHHHHhccCCCeEEE
Confidence 222 22347789999999999999997
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.24 E-value=0.0011 Score=62.52 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=70.8
Q ss_pred eEeeccCCcchhhhhccCC----CceEEEecccCCCCchhHHhhccc-cchhcccccCCCCCCCccchhhcccccccccc
Q 008748 402 NVMDMNSNLGGFAAALKDK----DVWVMNVAPVRMSARLKIIYDRGL-IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 476 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~----~~wvmnv~p~~~~~~l~~i~~rgl-~g~~~~~ce~~~typrtydl~h~~~~~s~~~~ 476 (555)
.|||++||.|.++.+|.+. .|+-+.+-|.--..-....-.|+. +-+.+|...+...-+-++|..-....+..
T Consensus 77 ~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~~--- 153 (230)
T d1g8sa_ 77 KILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQ--- 153 (230)
T ss_dssp EEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECCCS---
T ss_pred EEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccccc---
Confidence 5999999999999888742 355555444322122223344453 44555655554333345554333333331
Q ss_pred CCCChhhhhhhhcccccCCceEEEe----------cchhHHHHHHHHHhhcCccc
Q 008748 477 RGCSFEDLLIEMDRMLRPEGFVIIR----------DKSSIINYIRKFITALKWDG 521 (555)
Q Consensus 477 ~~c~~~~~~~e~drilrp~g~~i~r----------d~~~~~~~~~~~~~~~~w~~ 521 (555)
......++.|+.|+|+|||.++|- +...+.+++.+.++.-..+.
T Consensus 154 -~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~i 207 (230)
T d1g8sa_ 154 -PNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKI 207 (230)
T ss_dssp -TTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEE
T ss_pred -hHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 244678899999999999999885 22345667777777666665
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.15 E-value=0.00084 Score=64.25 Aligned_cols=121 Identities=14% Similarity=0.118 Sum_probs=76.9
Q ss_pred cceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc--cccchh---------------------------
Q 008748 399 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR--GLIGTV--------------------------- 448 (555)
Q Consensus 399 ~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r--gl~g~~--------------------------- 448 (555)
+=+.|+|.+||.|.+.+-+..+ |+.+|+=++-+ +.+.++-.+ .-.+.|
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~--~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCcEEEEeccCCCHHHHHHhcc--cCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 3457999999999886533332 44578877754 666544211 000110
Q ss_pred --------ccccc-----CCCCCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecchh----------
Q 008748 449 --------HDWCE-----SFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS---------- 505 (555)
Q Consensus 449 --------~~~ce-----~~~typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~---------- 505 (555)
+|-.+ .....+..||+|-+..+++.+..+..++..+|=+|-|+|||||.+|+.+...
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~ 211 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR 211 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcc
Confidence 11111 2233355899998888877554444567889999999999999999864311
Q ss_pred ------HHHHHHHHHhhcCccc
Q 008748 506 ------IINYIRKFITALKWDG 521 (555)
Q Consensus 506 ------~~~~~~~~~~~~~w~~ 521 (555)
..+.|+++++.---++
T Consensus 212 ~~~~~~t~e~v~~~l~~aGf~v 233 (263)
T d2g72a1 212 LTVVPVSEEEVREALVRSGYKV 233 (263)
T ss_dssp EECCCCCHHHHHHHHHHTTEEE
T ss_pred cccCCCCHHHHHHHHHHCCCeE
Confidence 3577888887766654
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.0052 Score=64.56 Aligned_cols=117 Identities=16% Similarity=0.127 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC----------------------CCccccCChhhhhHH
Q 008748 134 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----------------------DIIAMSLAPNDVHEN 191 (555)
Q Consensus 134 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~----------------------~V~~vdis~~dls~a 191 (555)
...+.+.+++.. ....+|+|-.||+|.|.....+. .+.|.|+.+.....+
T Consensus 151 ~Iv~~mv~ll~~--------~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la 222 (524)
T d2ar0a1 151 PLIKTIIHLLKP--------QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 222 (524)
T ss_dssp HHHHHHHHHHCC--------CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred chhHhhhhcccC--------ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHH
Confidence 345666666653 23358999999999998765431 356777777666555
Q ss_pred HHHHHHHcCCCe------EEEEeCCCCCC-CCCCCccEEEecccccc--c-----------ccc-hHHHHHHHHhhcCCC
Q 008748 192 QIQFALERGIPS------TLGVLGTKRLP-YPSRSFELAHCSRCRID--W-----------LQR-DGILLLELDRLLRPG 250 (555)
Q Consensus 192 ~i~~A~~rg~~v------~~~~~d~~~Lp-~~d~sFDlVv~s~~~l~--~-----------~~d-~~~~L~el~RvLkPG 250 (555)
..+.... +... .+...+..... .....||+|+++-- +. + ..+ .-.++..+.+.|++|
T Consensus 223 ~~nl~l~-~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPP-fg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~g 300 (524)
T d2ar0a1 223 LMNCLLH-DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPP-FGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG 300 (524)
T ss_dssp HHHHHTT-TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCC-CTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred HHHHHhh-cccccccccchhhhhhhhhhcccccccceeEEecCC-ccccccccchhhhccccccccHHHHHHHHHhcccc
Confidence 5444332 2221 12222221111 23357999997531 11 0 001 123899999999999
Q ss_pred cEEEEEcCCC
Q 008748 251 GYFVYSSPEA 260 (555)
Q Consensus 251 G~lvis~P~~ 260 (555)
|++.++.|..
T Consensus 301 Gr~aiIlP~~ 310 (524)
T d2ar0a1 301 GRAAVVVPDN 310 (524)
T ss_dssp EEEEEEEEHH
T ss_pred CcEEEEEehH
Confidence 9999999864
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.54 E-value=0.019 Score=55.62 Aligned_cols=103 Identities=13% Similarity=0.006 Sum_probs=61.9
Q ss_pred CCEEEEECCCCcHHHHHHhc-----CCCccccCChhhhhHHHHHHHHHcCC-CeEEEEeCCCCCCCC---CCCccEEEe-
Q 008748 156 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYP---SRSFELAHC- 225 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-----~~V~~vdis~~dls~a~i~~A~~rg~-~v~~~~~d~~~Lp~~---d~sFDlVv~- 225 (555)
+.+|||+.||.|+-+.+|++ ..++++|+++.-+.... +.+.+.|. ++.+...|...+... .+.||.|++
T Consensus 95 g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~-~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~D 173 (293)
T d2b9ea1 95 GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA-TLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLD 173 (293)
T ss_dssp TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEEC
T ss_pred cceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHH-HHHHhcCccceeeeehhhhhhcccccccceeeEEeec
Confidence 46899999999987777764 25788888876554433 33344454 467777776555422 256999996
Q ss_pred ---ccc-cc------ccc--cch----------HHHHHHHHhhcCCCcEEEEEcCCC
Q 008748 226 ---SRC-RI------DWL--QRD----------GILLLELDRLLRPGGYFVYSSPEA 260 (555)
Q Consensus 226 ---s~~-~l------~~~--~d~----------~~~L~el~RvLkPGG~lvis~P~~ 260 (555)
|.. ++ .|. .+. ..++..+. .|+|||.++.++-..
T Consensus 174 aPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl 229 (293)
T d2b9ea1 174 PSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL 229 (293)
T ss_dssp CCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred CcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence 211 11 010 010 11344444 479999999988654
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=95.47 E-value=0.0045 Score=57.16 Aligned_cols=114 Identities=11% Similarity=0.180 Sum_probs=69.4
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-Cch----hHHhhccccchh------cccccCCCCCCCccchhhcc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARL----KIIYDRGLIGTV------HDWCESFSTYPRTYDLLHAW 468 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~~l----~~i~~rgl~g~~------~~~ce~~~typrtydl~h~~ 468 (555)
..|+|++||.|.|+++|... |- .|++-++-. +-| .-+-++||-.+. .+.=+.|+ +.++|.++..
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~--~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~--~~~~d~v~i~ 106 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPD--INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFE--PGEVKRVYLN 106 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCC--TTSCCEEEEE
T ss_pred ceEEEEEecCcHHHHHHHHhCCC--CcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccC--chhhhccccc
Confidence 35999999999999998532 33 256666643 333 246667763221 11112233 4678877644
Q ss_pred ccccccc----cCCCChhhhhhhhcccccCCceEEEe-cchhHHHHHHHHHhhcC
Q 008748 469 KVFSEIE----ERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALK 518 (555)
Q Consensus 469 ~~~s~~~----~~~c~~~~~~~e~drilrp~g~~i~r-d~~~~~~~~~~~~~~~~ 518 (555)
...-..+ ++|=--..+|-||-|+|+|||.+.|+ |..+..+.+.+......
T Consensus 107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~ 161 (204)
T d2fcaa1 107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYG 161 (204)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred cccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCC
Confidence 3332111 11111247888999999999999886 77777777777766443
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.45 E-value=0.028 Score=54.15 Aligned_cols=82 Identities=20% Similarity=0.197 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhc--CCCccccCChhhhhHHHHHHHHHc-CCCeEEEEeCCC
Q 008748 135 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--HDIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTK 211 (555)
Q Consensus 135 y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~--~~V~~vdis~~dls~a~i~~A~~r-g~~v~~~~~d~~ 211 (555)
..+.+.+.+.. .+..+|||||+|.|.++..|++ ..+++++++...+......+.... ..++.+..+|+.
T Consensus 9 i~~kIv~~~~~--------~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l 80 (278)
T d1zq9a1 9 IINSIIDKAAL--------RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVL 80 (278)
T ss_dssp HHHHHHHHTCC--------CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTT
T ss_pred HHHHHHHHhCC--------CCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHh
Confidence 44555555543 2346899999999999999986 378899998876544332222111 235788889987
Q ss_pred CCCCCCCCccEEEec
Q 008748 212 RLPYPSRSFELAHCS 226 (555)
Q Consensus 212 ~Lp~~d~sFDlVv~s 226 (555)
...++ .++.|+++
T Consensus 81 ~~~~~--~~~~vV~N 93 (278)
T d1zq9a1 81 KTDLP--FFDTCVAN 93 (278)
T ss_dssp TSCCC--CCSEEEEE
T ss_pred hhhhh--hhhhhhcc
Confidence 77655 24667643
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=94.97 E-value=0.0076 Score=57.47 Aligned_cols=72 Identities=11% Similarity=0.083 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCCCccCCCCCCCEEEEECCCCcHHHHHHhcC--CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCC
Q 008748 134 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK 211 (555)
Q Consensus 134 ~y~~~l~~ll~~~~~~l~~~~~~~~VLDIGCGtG~~a~~La~~--~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~ 211 (555)
...+.+.+.+.. .+...|||||||+|.++..|++. .+++++++...+....... ....++.+..+|+.
T Consensus 8 ~~~~~Iv~~~~~--------~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~--~~~~~~~ii~~D~l 77 (252)
T d1qyra_ 8 FVIDSIVSAINP--------QKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHP--FLGPKLTIYQQDAM 77 (252)
T ss_dssp HHHHHHHHHHCC--------CTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCT--TTGGGEEEECSCGG
T ss_pred HHHHHHHHhcCC--------CCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHh--hhccchhHHhhhhh
Confidence 345566666653 23467999999999999999975 7888888776543222111 11245788888877
Q ss_pred CCCC
Q 008748 212 RLPY 215 (555)
Q Consensus 212 ~Lp~ 215 (555)
.+.+
T Consensus 78 ~~~~ 81 (252)
T d1qyra_ 78 TFNF 81 (252)
T ss_dssp GCCH
T ss_pred hhcc
Confidence 6654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.92 E-value=0.0046 Score=57.38 Aligned_cols=114 Identities=11% Similarity=-0.018 Sum_probs=70.1
Q ss_pred eEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhc-cccc-----------------------hhcccccCCC
Q 008748 402 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR-GLIG-----------------------TVHDWCESFS 456 (555)
Q Consensus 402 n~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~r-gl~g-----------------------~~~~~ce~~~ 456 (555)
.|||.+||.|-.+..|.+.- | +|+=+|.+ .-+....++ +..+ ...|.-+--+
T Consensus 48 rvLd~GCG~G~~a~~LA~~G-~--~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~ 124 (229)
T d2bzga1 48 RVFFPLCGKAVEMKWFADRG-H--SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPR 124 (229)
T ss_dssp EEEETTCTTCTHHHHHHHTT-C--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGG
T ss_pred EEEEeCCCCcHHHHHHHhCC-C--cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccc
Confidence 59999999999999987653 2 56666654 333222211 1000 0112222223
Q ss_pred CCCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecch------------hHHHHHHHHHhhcCccc
Q 008748 457 TYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS------------SIINYIRKFITALKWDG 521 (555)
Q Consensus 457 typrtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~------------~~~~~~~~~~~~~~w~~ 521 (555)
.+..+||+|...++|-.+.. =....++-+|-|+|||||.+++-... -.-++++.+... .|++
T Consensus 125 ~~~~~fd~i~~~~~l~~~~~--~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i 198 (229)
T d2bzga1 125 TNIGKFDMIWDRGALVAINP--GDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNI 198 (229)
T ss_dssp SCCCCEEEEEESSSTTTSCG--GGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEEE
T ss_pred cccCceeEEEEEEEEEeccc--hhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCEE
Confidence 45568999998888864422 13567899999999999987654111 125667788766 4665
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.90 E-value=0.0081 Score=60.54 Aligned_cols=99 Identities=12% Similarity=0.044 Sum_probs=65.2
Q ss_pred CCEEEEECCCCcHHHHHHhc-C---CCccccCChhhhhHHHHHHHHHcCC---------------CeEEEEeCCCCCCC-
Q 008748 156 IRNVLDVGCGVASFGAYLLS-H---DIIAMSLAPNDVHENQIQFALERGI---------------PSTLGVLGTKRLPY- 215 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~-~---~V~~vdis~~dls~a~i~~A~~rg~---------------~v~~~~~d~~~Lp~- 215 (555)
+.+|||..||+|..+...+. . .|+..|+++..+.....+....... .+.+...|+..+..
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~ 125 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 125 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh
Confidence 35899999999999986543 2 5778899888776666444433211 12333344322221
Q ss_pred CCCCccEEEecccccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 216 PSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 216 ~d~sFDlVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
....||+|..-- ...+..+|..+.+.++.||++.++..+
T Consensus 126 ~~~~fDvIDiDP-----fGs~~pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 126 RHRYFHFIDLDP-----FGSPMEFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp STTCEEEEEECC-----SSCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hcCcCCcccCCC-----CCCcHHHHHHHHHHhccCCEEEEEecC
Confidence 235699988432 234566999999999999999997643
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=94.75 E-value=0.057 Score=53.77 Aligned_cols=102 Identities=18% Similarity=0.273 Sum_probs=59.5
Q ss_pred CCEEEEECCCCcHHHHHHhcC--------------------CCccccCChhhhhHHHHHHHHHcC-CCeEEEE---eCCC
Q 008748 156 IRNVLDVGCGVASFGAYLLSH--------------------DIIAMSLAPNDVHENQIQFALERG-IPSTLGV---LGTK 211 (555)
Q Consensus 156 ~~~VLDIGCGtG~~a~~La~~--------------------~V~~vdis~~dls~a~i~~A~~rg-~~v~~~~---~d~~ 211 (555)
.-+|.|+||.+|..+..+.+. .|.--|+-..|...-......... .+..|.. ++..
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence 357999999999776544432 122234444444222211111111 1112222 2333
Q ss_pred CCCCCCCCccEEEecccccccccc---------------------------------hHHHHHHHHhhcCCCcEEEEEcC
Q 008748 212 RLPYPSRSFELAHCSRCRIDWLQR---------------------------------DGILLLELDRLLRPGGYFVYSSP 258 (555)
Q Consensus 212 ~Lp~~d~sFDlVv~s~~~l~~~~d---------------------------------~~~~L~el~RvLkPGG~lvis~P 258 (555)
.--||+++.|+++|+. ++||... ...+|+-=.+-|+|||.++++..
T Consensus 132 ~rLfP~~Slh~~~Ss~-alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~ 210 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSY-SLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SCCSCTTCBSCEEEES-CTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhcCCCCceEEeeehh-hhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 3448899999999988 6999631 12367777788999999999763
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=94.21 E-value=0.0049 Score=57.02 Aligned_cols=91 Identities=19% Similarity=0.242 Sum_probs=51.2
Q ss_pred cCCCcceeEeeccCCcchhhhhccC---CCceEEEecccCCC-Cchh----HHhhccccchhcccccCCCCCC--Cccch
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKD---KDVWVMNVAPVRMS-ARLK----IIYDRGLIGTVHDWCESFSTYP--RTYDL 464 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~---~~~wvmnv~p~~~~-~~l~----~i~~rgl~g~~~~~ce~~~typ--rtydl 464 (555)
++.+. +|+|++||+|.++|.|.. ....|. -++.. ..+. .+-..|+-.+..-.......+| .+||.
T Consensus 73 l~~g~--~VLdiG~GtG~~s~~la~~~~~~g~V~---~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~ 147 (213)
T d1dl5a1 73 LDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVV---SVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDV 147 (213)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEE---EEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEE
T ss_pred ccccc--eEEEecCccchhHHHHHHHhCCCCcEE---EeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhh
Confidence 55554 899999999999988742 222222 22211 1222 1222233222222233344444 47999
Q ss_pred hhccccccccccCCCChhhhhhhhcccccCCceEEE
Q 008748 465 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 500 (555)
Q Consensus 465 ~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~ 500 (555)
|+....+.. +-+ ++=|.|+|||.+|+
T Consensus 148 I~~~~~~~~-------~p~---~l~~~LkpGG~lv~ 173 (213)
T d1dl5a1 148 IFVTVGVDE-------VPE---TWFTQLKEGGRVIV 173 (213)
T ss_dssp EEECSBBSC-------CCH---HHHHHEEEEEEEEE
T ss_pred hhhhccHHH-------hHH---HHHHhcCCCcEEEE
Confidence 998776552 112 33367999999987
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=94.07 E-value=0.012 Score=55.99 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=62.9
Q ss_pred cCCCcceeEeeccCCcchhhhhccC---CCceEEEecccCCC-CchhHHhhc----cccc----hhcccccCCCCCCCcc
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKD---KDVWVMNVAPVRMS-ARLKIIYDR----GLIG----TVHDWCESFSTYPRTY 462 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~---~~~wvmnv~p~~~~-~~l~~i~~r----gl~g----~~~~~ce~~~typrty 462 (555)
|+.| .+|+|++||.|+++.+|.. ..- .|.-++-. .-+.+.-++ |..+ ...|.++.+. ..+|
T Consensus 83 i~pG--~rVLEiG~GsG~lt~~la~~v~~~g---~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~--~~~f 155 (250)
T d1yb2a1 83 LRPG--MDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS--DQMY 155 (250)
T ss_dssp CCTT--CEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC--SCCE
T ss_pred CCCc--CEEEEeeeeCcHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc--ccee
Confidence 5555 3699999999999888753 221 12223332 334443332 3222 3356777654 4789
Q ss_pred chhhccccccccccCCCChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhc
Q 008748 463 DLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITAL 517 (555)
Q Consensus 463 dl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~ 517 (555)
|.+..+ +- +-..++=++-|+|||||.+++-- -.++.+++++..|
T Consensus 156 D~V~ld-~p--------~p~~~l~~~~~~LKpGG~lv~~~--P~i~Qv~~~~~~l 199 (250)
T d1yb2a1 156 DAVIAD-IP--------DPWNHVQKIASMMKPGSVATFYL--PNFDQSEKTVLSL 199 (250)
T ss_dssp EEEEEC-CS--------CGGGSHHHHHHTEEEEEEEEEEE--SSHHHHHHHHHHS
T ss_pred eeeeec-CC--------chHHHHHHHHHhcCCCceEEEEe--CCcChHHHHHHHH
Confidence 988643 11 13467888999999999999742 2244555555554
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.98 E-value=0.037 Score=50.66 Aligned_cols=118 Identities=14% Similarity=0.191 Sum_probs=70.7
Q ss_pred eeEeeccCCcchhhhhccCC-CceEEEecccCCC-C----chhHHhhcccc--chhc-ccccCCCCC-CCccchhhcccc
Q 008748 401 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-A----RLKIIYDRGLI--GTVH-DWCESFSTY-PRTYDLLHAWKV 470 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~-~----~l~~i~~rgl~--g~~~-~~ce~~~ty-prtydl~h~~~~ 470 (555)
..|+|++||.|.|..+|... |- .|++-++-. + .+.-+-+.||- -++| |..+-..-+ +.++|.||...-
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~--~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPD--INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CeEEEEeccCCHHHHHHHHHCCC--CceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 46999999999999888532 22 255555543 2 23345567762 2222 222211122 358888874332
Q ss_pred cccc-----ccCCCChhhhhhhhcccccCCceEEE-ecchhHHHHHHHHHhhcCccc
Q 008748 471 FSEI-----EERGCSFEDLLIEMDRMLRPEGFVII-RDKSSIINYIRKFITALKWDG 521 (555)
Q Consensus 471 ~s~~-----~~~~c~~~~~~~e~drilrp~g~~i~-rd~~~~~~~~~~~~~~~~w~~ 521 (555)
-- + .++|=--..+|-++-|+|+|||.++| .|..+..+.+........|..
T Consensus 111 dP-w~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~ 166 (204)
T d1yzha1 111 DP-WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKL 166 (204)
T ss_dssp CC-CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEE
T ss_pred cc-ccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCccc
Confidence 11 1 12222235788899999999999988 467777777666666655543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=93.89 E-value=0.0051 Score=54.30 Aligned_cols=107 Identities=10% Similarity=0.183 Sum_probs=61.2
Q ss_pred HHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhhcc----c------c----chhcc
Q 008748 386 DYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRG----L------I----GTVHD 450 (555)
Q Consensus 386 ~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~rg----l------~----g~~~~ 450 (555)
.|+..|. +..+. -|+|++||.|.+|..|.++-. .|+=+|-+ +-|...-+|- + . |...+
T Consensus 11 ~~~~~l~--~~~~~--rvLd~GCG~G~~a~~la~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T d1pjza_ 11 QYWSSLN--VVPGA--RVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE 83 (201)
T ss_dssp HHHHHHC--CCTTC--EEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred HHHHHcC--CCCCC--EEEEecCcCCHHHHHHHHcCC---ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccc
Confidence 4666664 34433 699999999999999975532 23333322 3343333321 1 0 11101
Q ss_pred -cc-cCCCCCC---CccchhhccccccccccCCCChhhhhhhhcccccCCceEEEe
Q 008748 451 -WC-ESFSTYP---RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 501 (555)
Q Consensus 451 -~c-e~~~typ---rtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r 501 (555)
.| ..+...| .+||+|....+|..+.. -....++-+|-|.|+|||.+++.
T Consensus 84 ~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~--~~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 84 IWCGDFFALTARDIGHCAAFYDRAAMIALPA--DMRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp EEEECCSSSTHHHHHSEEEEEEESCGGGSCH--HHHHHHHHHHHHHSCSEEEEEEE
T ss_pred eecccccccccccccceeEEEEEeeeEecch--hhhHHHHHHHHHhcCCCcEEEEE
Confidence 11 1222221 37898888777763321 12456888899999999998764
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.44 E-value=0.041 Score=51.36 Aligned_cols=92 Identities=17% Similarity=0.293 Sum_probs=56.6
Q ss_pred EEEEeCCCCC--CCCCCCccEEEeccc----------ccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHHHH
Q 008748 204 TLGVLGTKRL--PYPSRSFELAHCSRC----------RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIW 271 (555)
Q Consensus 204 ~~~~~d~~~L--p~~d~sFDlVv~s~~----------~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~~~ 271 (555)
.+.++|...+ .++++++|+|+++-- ...|.......+.++.|+|||||.+++.....+.........+
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~~ 85 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLI 85 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHH
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccchh
Confidence 4566674322 356899999998531 0122233356789999999999999986644332222222234
Q ss_pred HHHHHHHHhcCcEEEEEeeceEEeecCC
Q 008748 272 NAMYDLLKSMCWKIVSKKDQTVIWAKPI 299 (555)
Q Consensus 272 ~~l~~l~~~~gw~vv~~~~~~~iw~KPl 299 (555)
..+..+.+..+|.... ..+|.++-
T Consensus 86 ~~~~~~~~~~~~~~~~----~i~~~k~~ 109 (279)
T d1eg2a_ 86 SIISHMRQNSKMLLAN----LIIWNYPN 109 (279)
T ss_dssp HHHHHHHHHCCCEEEE----EEEEECSC
T ss_pred hHHHHHHhccCceeee----eeeecccc
Confidence 5566778888987653 34566653
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.40 E-value=0.025 Score=50.57 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=70.2
Q ss_pred cCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh----cccc---chhcccccCCCCCCCccchhh
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGLI---GTVHDWCESFSTYPRTYDLLH 466 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~----rgl~---g~~~~~ce~~~typrtydl~h 466 (555)
+..+. .|+|++||+|+++.+|... .- .|+-++-. +-+..+-+ .||- =++|.-.+...+=..+||++=
T Consensus 31 ~~~g~--~VLDiGcGsG~~s~~lA~~-~~--~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~ 105 (186)
T d1l3ia_ 31 PGKND--VAVDVGCGTGGVTLELAGR-VR--RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAV 105 (186)
T ss_dssp CCTTC--EEEEESCTTSHHHHHHHTT-SS--EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEE
T ss_pred CCCCC--EEEEEECCeEccccccccc-ce--EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEE
Confidence 44444 5999999999999998754 21 34555543 55554332 3442 112211111111124677664
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCceEEEecc-hhHHHHHHHHHhhcCccce
Q 008748 467 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWDGW 522 (555)
Q Consensus 467 ~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~-~~~~~~~~~~~~~~~w~~~ 522 (555)
..+.- =.+..++-++-+.|||||++++-.- .+-..++.+.++...|+..
T Consensus 106 ~~~~~-------~~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~ 155 (186)
T d1l3ia_ 106 VGGSG-------GELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN 155 (186)
T ss_dssp ESCCT-------TCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred EeCcc-------ccchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeE
Confidence 33311 1377899999999999999998653 4566777777877777653
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=93.06 E-value=0.012 Score=56.35 Aligned_cols=110 Identities=17% Similarity=0.164 Sum_probs=62.2
Q ss_pred cCCCcceeEeeccCCcchhhhhccC---CCceEEEecccCCC-CchhH----Hhhccccch----hcccccCCCCCCCcc
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKD---KDVWVMNVAPVRMS-ARLKI----IYDRGLIGT----VHDWCESFSTYPRTY 462 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~---~~~wvmnv~p~~~~-~~l~~----i~~rgl~g~----~~~~ce~~~typrty 462 (555)
|..+. +|+|++||.|+++++|.. ..- .|+-++-. ..+.+ +-.-|+... ..|-++.|.. ..+
T Consensus 101 i~pG~--~VLDiG~GsG~lt~~lA~~~~~~G---~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~--~~~ 173 (266)
T d1o54a_ 101 VKEGD--RIIDTGVGSGAMCAVLARAVGSSG---KVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE--KDV 173 (266)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHTTTTC---EEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC--CSE
T ss_pred CCCCC--EEEECCCCCCHHHHHHHHHhCCCc---EEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc--cce
Confidence 45544 699999999999888853 111 23333332 33332 222344322 2233444432 456
Q ss_pred chhhccccccccccCCCChhhhhhhhcccccCCceEEEe-cchhHHHHHHHHHhhcCcc
Q 008748 463 DLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALKWD 520 (555)
Q Consensus 463 dl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~r-d~~~~~~~~~~~~~~~~w~ 520 (555)
|.+. - +-.+...+|-++-|+|||||.+++= =..+-++++-+.++.-.|.
T Consensus 174 D~V~-----~----d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 174 DALF-----L----DVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 223 (266)
T ss_dssp EEEE-----E----CCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred eeeE-----e----cCCCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence 6543 2 2235678899999999999999863 3444444554445544553
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.99 E-value=0.045 Score=50.71 Aligned_cols=131 Identities=16% Similarity=0.087 Sum_probs=75.0
Q ss_pred cCCCcceeEeeccCCcchhhhhccCC---CceEEEecccCCCCc-----hhHHhhccccc---hh-cccccCCCC-----
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDK---DVWVMNVAPVRMSAR-----LKIIYDRGLIG---TV-HDWCESFST----- 457 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~---~~wvmnv~p~~~~~~-----l~~i~~rgl~g---~~-~~~ce~~~t----- 457 (555)
+...+-+||+++++++|--|++|..- .- -|+-++.... -..+-.-|+-- +. .|-.|.++.
T Consensus 55 ~~~~~~k~vLEiGt~~GyStl~~a~al~~~g---~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~ 131 (219)
T d2avda1 55 ARLIQAKKALDLGTFTGYSALALALALPADG---RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAG 131 (219)
T ss_dssp HHHTTCCEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTT
T ss_pred HHccCCCeEEEEechhhHHHHHHHHhCCCCc---eEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhc
Confidence 44556899999999999777776431 11 2222222211 12233333311 11 133333322
Q ss_pred CCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecchh----------------HHHHHHHHHhhcCccc
Q 008748 458 YPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS----------------IINYIRKFITALKWDG 521 (555)
Q Consensus 458 yprtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~----------------~~~~~~~~~~~~~w~~ 521 (555)
.+.+||||..++--+ ...+.+-++=+.|||||.+|+.|..- +-+-.+.|.+.-+|++
T Consensus 132 ~~~~fD~ifiD~dk~-------~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~ 204 (219)
T d2avda1 132 EAGTFDVAVVDADKE-------NCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYI 204 (219)
T ss_dssp CTTCEEEEEECSCST-------THHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEE
T ss_pred ccCCccEEEEeCCHH-------HHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 256899999776333 24445555668999999999975421 2233455667788887
Q ss_pred eecccccccccCCCCCceEEEEEe
Q 008748 522 WLSEVEPRIDALSSSEERVLIAKK 545 (555)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~l~~~k 545 (555)
.. + |. .+.|+||+|
T Consensus 205 ~l--l-----Pi---gdGl~ia~K 218 (219)
T d2avda1 205 SL--L-----PL---GDGLTLAFK 218 (219)
T ss_dssp EE--E-----CS---TTCEEEEEE
T ss_pred EE--e-----ec---CCeeEEEEe
Confidence 32 2 22 357999998
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=90.86 E-value=0.19 Score=43.47 Aligned_cols=92 Identities=14% Similarity=0.065 Sum_probs=57.0
Q ss_pred CCEEEEECCC-CcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC---------CCCCCccE
Q 008748 156 IRNVLDVGCG-VASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---------YPSRSFEL 222 (555)
Q Consensus 156 ~~~VLDIGCG-tG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp---------~~d~sFDl 222 (555)
..+||=+||| .|.++..++.. +|+++ +.++...+.+++.+....+..-....-. ...+.+|+
T Consensus 27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v-----~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~ 101 (170)
T d1e3ja2 27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCT-----ARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNV 101 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEE-----ESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSE
T ss_pred CCEEEEEcccccchhhHhhHhhhccccccc-----chHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCce
Confidence 3589999998 55666666643 44555 4455666888887765544322211110 01245898
Q ss_pred EEecccccccccchHHHHHHHHhhcCCCcEEEEEcCC
Q 008748 223 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 259 (555)
Q Consensus 223 Vv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~P~ 259 (555)
|+-.-. ....+....++|+|||.+++....
T Consensus 102 vid~~g-------~~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 102 TIDCSG-------NEKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp EEECSC-------CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred eeecCC-------ChHHHHHHHHHHhcCCceEEEecC
Confidence 873321 135788899999999999987643
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=90.78 E-value=0.14 Score=46.76 Aligned_cols=83 Identities=13% Similarity=0.046 Sum_probs=50.5
Q ss_pred EEEeCCCC-C-CCCCCCccEEEeccc-------------ccccccchHHHHHHHHhhcCCCcEEEEEcCCCCCCChhhHH
Q 008748 205 LGVLGTKR-L-PYPSRSFELAHCSRC-------------RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRR 269 (555)
Q Consensus 205 ~~~~d~~~-L-p~~d~sFDlVv~s~~-------------~l~~~~d~~~~L~el~RvLkPGG~lvis~P~~~~~~~e~~~ 269 (555)
+..+|... | .++++++|+|+++-- .-+|.......+.++.|+|+|||.+++.... .
T Consensus 7 i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~---------~ 77 (256)
T d1g60a_ 7 IHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP---------F 77 (256)
T ss_dssp EEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH---------H
T ss_pred EEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCc---------h
Confidence 44555322 1 245778888887521 0111122245789999999999998864321 2
Q ss_pred HHHHHHHHHHhcCcEEEEEeeceEEeecCCC
Q 008748 270 IWNAMYDLLKSMCWKIVSKKDQTVIWAKPIS 300 (555)
Q Consensus 270 ~~~~l~~l~~~~gw~vv~~~~~~~iw~KPl~ 300 (555)
....+...+...||.... ..+|.|+..
T Consensus 78 ~~~~~~~~~~~~g~~~~~----~iiW~k~~~ 104 (256)
T d1g60a_ 78 NCAFICQYLVSKGMIFQN----WITWDKRDG 104 (256)
T ss_dssp HHHHHHHHHHHTTCEEEE----EEEECCCCS
T ss_pred hhhhhhhhhhcccceeee----eeEeeeccc
Confidence 234556677888997663 458888653
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=90.44 E-value=0.029 Score=54.86 Aligned_cols=118 Identities=16% Similarity=0.166 Sum_probs=68.6
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHH----hhccccc------hhcccccCCCCCCCccchhhccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKII----YDRGLIG------TVHDWCESFSTYPRTYDLLHAWK 469 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i----~~rgl~g------~~~~~ce~~~typrtydl~h~~~ 469 (555)
..|+|+.||.|||+.++... ...|+-++.. .-|... -.-||-. -.-+|.+.+...-.+||+|-.+-
T Consensus 147 ~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 147 ERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp EEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 68999999999999888632 2356666654 344432 2234421 11233333444446899987653
Q ss_pred c-ccccccC----CCChhhhhhhhcccccCCceEEEe------cchhHHHHHHHHHhhcCccc
Q 008748 470 V-FSEIEER----GCSFEDLLIEMDRMLRPEGFVIIR------DKSSIINYIRKFITALKWDG 521 (555)
Q Consensus 470 ~-~s~~~~~----~c~~~~~~~e~drilrp~g~~i~r------d~~~~~~~~~~~~~~~~w~~ 521 (555)
= |+.-... .-....|+-.+=++|+|||.+++- +..++.+.|.+.+..-+.+.
T Consensus 224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~ 286 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLL 286 (318)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCE
Confidence 2 2211100 012346788888999999999985 33345555555555555544
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=89.66 E-value=0.16 Score=47.19 Aligned_cols=95 Identities=15% Similarity=0.127 Sum_probs=61.1
Q ss_pred CcceeEeeccCCcchhhhhccCC----CceEEEecccCCCCchhHHhhccccchhcccccCCCCCCCccchhhccccccc
Q 008748 398 NTFRNVMDMNSNLGGFAAALKDK----DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSE 473 (555)
Q Consensus 398 ~~~rn~~dm~~~~g~faa~l~~~----~~wvmnv~p~~~~~~l~~i~~rgl~g~~~~~ce~~~typrtydl~h~~~~~s~ 473 (555)
..++.|+|+++|.|.++++|.+. .+-|.-.-++-+..... + .+-++-||+-++++.. ..|-|-|..|.++.
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~---~-r~~~~~~d~~~~~P~a-d~~~l~~vlh~~~d 154 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSY---P-GVEHVGGDMFVSIPKA-DAVFMKWICHDWSD 154 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCC---T-TEEEEECCTTTCCCCC-SCEECSSSSTTSCH
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccC---C-ceEEecccccccCCCc-ceEEEEEEeecCCH
Confidence 56899999999999999999743 33444332222211111 1 2556778887776643 24555555555552
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEec
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~rd 502 (555)
. ...-||-.+=+.|+|||.++|-|
T Consensus 155 ~-----~~~~iL~~~~~al~pgg~~li~d 178 (243)
T d1kyza2 155 E-----HCLKFLKNCYEALPDNGKVIVAE 178 (243)
T ss_dssp H-----HHHHHHHHHHHHCCSSSCEEEEE
T ss_pred H-----HHHHHHHHHHHhcCCCceEEEEE
Confidence 1 14468889999999999998864
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=89.62 E-value=0.062 Score=50.46 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=61.1
Q ss_pred CCcceeEeeccCCcchhhhhccCC-CceEEEecccCCCCchhHHhhcc----ccchhcccccCCCCCCCccchhhccccc
Q 008748 397 KNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYDRG----LIGTVHDWCESFSTYPRTYDLLHAWKVF 471 (555)
Q Consensus 397 ~~~~rn~~dm~~~~g~faa~l~~~-~~wvmnv~p~~~~~~l~~i~~rg----l~g~~~~~ce~~~typrtydl~h~~~~~ 471 (555)
.+.++.|+|+++|.|.++++|.+. |-. .++-.|-| .+|-+.+ +--+-+|.=+ ..| ..|++...+++
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l--~~~v~Dlp---~vi~~~~~~~ri~~~~gd~~~---~~p-~~D~~~l~~vL 149 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELIISKYPLI--KGINFDLP---QVIENAPPLSGIEHVGGDMFA---SVP-QGDAMILKAVC 149 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTC--EEEEEECH---HHHTTCCCCTTEEEEECCTTT---CCC-CEEEEEEESSG
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCC--eEEEecch---hhhhccCCCCCeEEecCCccc---ccc-cceEEEEehhh
Confidence 578999999999999999999633 321 11111222 1222222 2233456533 445 45888888877
Q ss_pred cccccCCCChhhhhhhhcccccCCceEEEecc
Q 008748 472 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 503 (555)
Q Consensus 472 s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~ 503 (555)
-.+... ....||-.+=+-|+|||.++|-|.
T Consensus 150 h~~~de--~~~~iL~~~~~aL~pgg~llI~e~ 179 (244)
T d1fp1d2 150 HNWSDE--KCIEFLSNCHKALSPNGKVIIVEF 179 (244)
T ss_dssp GGSCHH--HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhCCHH--HHHHHHHHHHHHcCCCcEEEEEEE
Confidence 754322 234678888899999999998763
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=89.59 E-value=0.23 Score=47.23 Aligned_cols=152 Identities=9% Similarity=0.126 Sum_probs=88.6
Q ss_pred HhHhhHHHHHHHHHHhhhhccCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHh----hccc---cc
Q 008748 375 EDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY----DRGL---IG 446 (555)
Q Consensus 375 ~d~~~w~~~v~~y~~~~~~~~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~----~rgl---~g 446 (555)
.||+.+-+.+-.+.+.. ....|+|++||.|..+.++...|-+ +|+-++-. .-|.+.- .-|+ +-
T Consensus 93 peTE~lv~~~~~~~~~~-------~~~~vld~g~GsG~i~~~la~~~~~--~v~a~Dis~~Al~~A~~Na~~~~~~~~~~ 163 (271)
T d1nv8a_ 93 PETEELVELALELIRKY-------GIKTVADIGTGSGAIGVSVAKFSDA--IVFATDVSSKAVEIARKNAERHGVSDRFF 163 (271)
T ss_dssp TTHHHHHHHHHHHHHHH-------TCCEEEEESCTTSHHHHHHHHHSSC--EEEEEESCHHHHHHHHHHHHHTTCTTSEE
T ss_pred hhhhhhhhhhhhhhccc-------cccEEEEeeeeeehhhhhhhhcccc--eeeechhhhhHHHHHHHHHHHcCCCceeE
Confidence 35677777666554322 2457999999999888887655533 35555533 4444322 2344 22
Q ss_pred hh-cccccCCCCCCCccchhhcccccc-------c---------cccCCCChhhhhhhhcccccCCceEEEecchhHHHH
Q 008748 447 TV-HDWCESFSTYPRTYDLLHAWKVFS-------E---------IEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINY 509 (555)
Q Consensus 447 ~~-~~~ce~~~typrtydl~h~~~~~s-------~---------~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~~~~~ 509 (555)
++ .||-++++...-.||||=++==.- . +....-.+..+--=+-++|+|||++++-=..+--++
T Consensus 164 i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~~~ 243 (271)
T d1nv8a_ 164 VRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEE 243 (271)
T ss_dssp EEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHH
T ss_pred EeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHHHH
Confidence 33 356666554345788876552110 0 000011122211113588999999999755566788
Q ss_pred HHHHHhhcCccceecccccccccCCCCCceEEEEEec
Q 008748 510 IRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKKK 546 (555)
Q Consensus 510 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~k~ 546 (555)
|++++....|- .+ + ++.+++++++|+
T Consensus 244 v~~l~~~~g~~---kD-------l-~g~~R~~~~~k~ 269 (271)
T d1nv8a_ 244 LKKIVSDTVFL---KD-------S-AGKYRFLLLNRR 269 (271)
T ss_dssp HTTTSTTCEEE---EC-------T-TSSEEEEEEECC
T ss_pred HHHHHHhCCEE---ec-------c-CCCcEEEEEEEc
Confidence 88888876662 12 2 578999999996
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.00 E-value=0.026 Score=49.57 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=53.7
Q ss_pred CCEEEEECCC-CcHHHHHHhc---CCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCC-CCCCCCccEEEeccccc
Q 008748 156 IRNVLDVGCG-VASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-PYPSRSFELAHCSRCRI 230 (555)
Q Consensus 156 ~~~VLDIGCG-tG~~a~~La~---~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~L-p~~d~sFDlVv~s~~~l 230 (555)
..+||-+|+| .|.++..+++ .+++++|.++. .++.+++.|....+...+.... .-..+.||+|+......
T Consensus 28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~-----k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~ 102 (168)
T d1piwa2 28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR-----KREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSL 102 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST-----THHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCS
T ss_pred CCEEEEECCCCcchhHHHHhhhccccccccccchh-----HHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCC
Confidence 4689999998 5666666664 25666665543 4466777775533322211111 11235699887532111
Q ss_pred ccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 231 DWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 231 ~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
+ ...+....++|+|||.+++..
T Consensus 103 ~-----~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 103 T-----DIDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp T-----TCCTTTGGGGEEEEEEEEECC
T ss_pred c-----cchHHHHHHHhhccceEEEec
Confidence 1 112556788999999999864
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.56 E-value=0.023 Score=52.41 Aligned_cols=120 Identities=13% Similarity=0.161 Sum_probs=65.4
Q ss_pred ccCCCcceeEeeccCCcchhhhhccC---CCceEEE--ecccCCCCchhHHhhccccc---h-hcccccCCCCC-----C
Q 008748 394 VAQKNTFRNVMDMNSNLGGFAAALKD---KDVWVMN--VAPVRMSARLKIIYDRGLIG---T-VHDWCESFSTY-----P 459 (555)
Q Consensus 394 ~~~~~~~rn~~dm~~~~g~faa~l~~---~~~wvmn--v~p~~~~~~l~~i~~rgl~g---~-~~~~ce~~~ty-----p 459 (555)
.+...+-++|++++++.|..|.+|.. ...-|.. +-|......-..+-.-|+-. + ..|..|.++.. .
T Consensus 51 lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~ 130 (214)
T d2cl5a1 51 VIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDV 130 (214)
T ss_dssp HHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCC
T ss_pred HHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccc
Confidence 34555678999999999988777643 2223222 21111112222334446422 1 11223322221 3
Q ss_pred CccchhhccccccccccCCCChhhhhhhhcccccCCceEEEec-----chhHHHHHHHHHhhcCccc
Q 008748 460 RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD-----KSSIINYIRKFITALKWDG 521 (555)
Q Consensus 460 rtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd-----~~~~~~~~~~~~~~~~w~~ 521 (555)
.+||++.-++-.+. + .....+.|.-|+|||||.+|+.| ..+.+..|+. .=+|+.
T Consensus 131 ~~~D~ifiD~~~~~-~----~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~---~~~~~~ 189 (214)
T d2cl5a1 131 DTLDMVFLDHWKDR-Y----LPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRG---SSSFEC 189 (214)
T ss_dssp CCEEEEEECSCGGG-H----HHHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHH---CTTEEE
T ss_pred cccceeeecccccc-c----ccHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhc---cCceee
Confidence 57899987764441 1 12234667789999999888765 3556666654 345654
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.52 E-value=0.14 Score=44.67 Aligned_cols=87 Identities=16% Similarity=0.193 Sum_probs=54.7
Q ss_pred CCCEEEEECC--CCcHHHHHHhcC---CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC--------CCCCCcc
Q 008748 155 NIRNVLDVGC--GVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFE 221 (555)
Q Consensus 155 ~~~~VLDIGC--GtG~~a~~La~~---~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp--------~~d~sFD 221 (555)
+..+||-.|+ |.|..+..++.. ++++++- ++...+.+++.|....+ |..+.. ...+.||
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~-----~~~~~~~~~~~Ga~~vi---~~~~~~~~~~i~~~t~~~g~d 99 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAG-----TEEGQKIVLQNGAHEVF---NHREVNYIDKIKKYVGEKGID 99 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES-----SHHHHHHHHHTTCSEEE---ETTSTTHHHHHHHHHCTTCEE
T ss_pred CCCEEEEEeccccccccccccccccCcccccccc-----cccccccccccCccccc---ccccccHHHHhhhhhccCCce
Confidence 3468999997 466677777653 3444432 34455677777654332 222211 1245699
Q ss_pred EEEecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 222 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 222 lVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
+|+.... ...+....++|+|+|.++...
T Consensus 100 ~v~d~~g--------~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 100 IIIEMLA--------NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp EEEESCH--------HHHHHHHHHHEEEEEEEEECC
T ss_pred EEeeccc--------HHHHHHHHhccCCCCEEEEEe
Confidence 9986431 246888899999999999864
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=86.64 E-value=0.34 Score=46.02 Aligned_cols=137 Identities=14% Similarity=0.268 Sum_probs=83.2
Q ss_pred CCcceeEeeccCCcchhhhhccC-CCceEEEecccCCC-CchhH----Hhhccc--c-chhcccccCCCCCCCccchhhc
Q 008748 397 KNTFRNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMS-ARLKI----IYDRGL--I-GTVHDWCESFSTYPRTYDLLHA 467 (555)
Q Consensus 397 ~~~~rn~~dm~~~~g~faa~l~~-~~~wvmnv~p~~~~-~~l~~----i~~rgl--~-g~~~~~ce~~~typrtydl~h~ 467 (555)
....| |+|++||+|.-|.+|.. .|-. .|+-+|-. ..|.+ +-.-|+ | =+..||-++++. .+||||=+
T Consensus 107 ~~~~~-vlDlGtGSG~I~i~la~~~p~~--~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~--~~fDlIvs 181 (274)
T d2b3ta1 107 EQPCR-ILDLGTGTGAIALALASERPDC--EIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAG--QQFAMIVS 181 (274)
T ss_dssp SSCCE-EEEETCTTSHHHHHHHHHCTTS--EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTT--CCEEEEEE
T ss_pred ccccc-eeeeehhhhHHHHHHHhhCCcc--eeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCC--CceeEEEe
Confidence 34444 99999999999988853 3332 45555542 33433 111222 2 245577776654 58999876
Q ss_pred cccccccc--------cCC------C-------ChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhcCccceeccc
Q 008748 468 WKVFSEIE--------ERG------C-------SFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEV 526 (555)
Q Consensus 468 ~~~~s~~~--------~~~------c-------~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~~w~~~~~~~ 526 (555)
+-=+-... .+. . -+..|+-+.-+.|+|||++++-=..+-.+.|++++....|.. +.+.
T Consensus 182 NPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~~gf~~-i~~~ 260 (274)
T d2b3ta1 182 NPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHD-VETC 260 (274)
T ss_dssp CCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTT-CCEE
T ss_pred cchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCCe-EEEE
Confidence 53321000 000 0 022478888999999999998644444678889998888863 1111
Q ss_pred ccccccCCCCCceEEEEE
Q 008748 527 EPRIDALSSSEERVLIAK 544 (555)
Q Consensus 527 ~~~~~~~~~~~~~~l~~~ 544 (555)
.| + ++.+++++++
T Consensus 261 --kD--l-~g~~R~v~~r 273 (274)
T d2b3ta1 261 --RD--Y-GDNERVTLGR 273 (274)
T ss_dssp --EC--T-TSSEEEEEEE
T ss_pred --EC--C-CCCceEEEEe
Confidence 11 2 4689999885
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=85.74 E-value=0.34 Score=42.43 Aligned_cols=89 Identities=25% Similarity=0.340 Sum_probs=53.9
Q ss_pred CCEEEEECCC-CcHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCC---------CCCCCCCCcc
Q 008748 156 IRNVLDVGCG-VASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK---------RLPYPSRSFE 221 (555)
Q Consensus 156 ~~~VLDIGCG-tG~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~---------~Lp~~d~sFD 221 (555)
+.+||-+||| .|.++..+++. .|+++|. ++...+.+++.|....+...+.. ++ .....+|
T Consensus 29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~-----~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~-~~~~g~D 102 (182)
T d1vj0a2 29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAG-----SPNRLKLAEEIGADLTLNRRETSVEERRKAIMDI-THGRGAD 102 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEES-----CHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHH-TTTSCEE
T ss_pred CCEEEEECCCccchhheeccccccccccccccc-----ccccccccccccceEEEeccccchHHHHHHHHHh-hCCCCce
Confidence 4689999997 35666666653 3445544 55566777777654333211110 01 1124599
Q ss_pred EEEecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 222 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 222 lVv~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
+|+-.-. . ...+....++|++||.+++..
T Consensus 103 vvid~vG-~------~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 103 FILEATG-D------SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp EEEECSS-C------TTHHHHHHHHEEEEEEEEECC
T ss_pred EEeecCC-c------hhHHHHHHHHhcCCCEEEEEe
Confidence 9884321 1 236888899999999998864
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.32 E-value=0.12 Score=49.13 Aligned_cols=97 Identities=10% Similarity=0.117 Sum_probs=53.7
Q ss_pred cCCCcceeEeeccCCcchhhhhccC---C--CceEEEecccCCC-CchhHHhh---c---cccchhc----cccc-CCCC
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKD---K--DVWVMNVAPVRMS-ARLKIIYD---R---GLIGTVH----DWCE-SFST 457 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~---~--~~wvmnv~p~~~~-~~l~~i~~---r---gl~g~~~----~~ce-~~~t 457 (555)
++.|. +|+|.+||.|+++.+|.. . .|+.. +-. .-+.+.-+ + +.....+ |-.+ .|+
T Consensus 94 i~PG~--~VLE~G~GsG~lt~~La~~vgp~G~V~~~-----d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~- 165 (264)
T d1i9ga_ 94 IFPGA--RVLEAGAGSGALTLSLLRAVGPAGQVISY-----EQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP- 165 (264)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEE-----CSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC-
T ss_pred CCCCC--EEEecCcCCcHHHHHHHHhhCCCcEEEEe-----cCCHHHHHHHHHhhhhhccCCCceEEEEeccccccccc-
Confidence 55554 799999999999999863 1 23333 322 33333221 1 1112222 2222 122
Q ss_pred CCCccchhhccccccccccCCCChhhhhhhhcccccCCceEEE-ecchhHHHH
Q 008748 458 YPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII-RDKSSIINY 509 (555)
Q Consensus 458 yprtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~-rd~~~~~~~ 509 (555)
..+||.+.. ++- +-..++-++-|+|||||.+++ --+.+-+.+
T Consensus 166 -~~~fDaV~l-----dlp----~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~ 208 (264)
T d1i9ga_ 166 -DGSVDRAVL-----DML----APWEVLDAVSRLLVAGGVLMVYVATVTQLSR 208 (264)
T ss_dssp -TTCEEEEEE-----ESS----CGGGGHHHHHHHEEEEEEEEEEESSHHHHHH
T ss_pred -CCCcceEEE-----ecC----CHHHHHHHHHhccCCCCEEEEEeCccChHHH
Confidence 357887642 121 134678899999999998886 344433333
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=84.58 E-value=0.35 Score=45.45 Aligned_cols=112 Identities=10% Similarity=0.119 Sum_probs=62.0
Q ss_pred eeEeeccCCcchhhhhccCCCceEEEecccCC-CCchhH----HhhccccchhcccccCCCCCCC--ccchhhccccccc
Q 008748 401 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKI----IYDRGLIGTVHDWCESFSTYPR--TYDLLHAWKVFSE 473 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~-~~~l~~----i~~rgl~g~~~~~ce~~~typr--tydl~h~~~~~s~ 473 (555)
.+|+||.||.|+|+..+....- -.|+-++- ++.+.. +-.-||-+...-.+.-...++. .+|.|..+-..+
T Consensus 109 ~~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p~~- 185 (260)
T d2frna1 109 ELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVVR- 185 (260)
T ss_dssp CEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCSS-
T ss_pred cEEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCCCc-
Confidence 4699999999999876543321 13344443 233332 2223553322222222223333 688776443322
Q ss_pred cccCCCChhhhhhhhcccccCCceEEEecc-------hhHHHHHHHHHhhcCccce
Q 008748 474 IEERGCSFEDLLIEMDRMLRPEGFVIIRDK-------SSIINYIRKFITALKWDGW 522 (555)
Q Consensus 474 ~~~~~c~~~~~~~e~drilrp~g~~i~rd~-------~~~~~~~~~~~~~~~w~~~ 522 (555)
-.+.+=+.=++|+|||++.+-+. .+..+.+++++....+++.
T Consensus 186 -------~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~ 234 (260)
T d2frna1 186 -------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVE 234 (260)
T ss_dssp -------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEE
T ss_pred -------hHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceE
Confidence 23455566789999999865432 2346777888887777763
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=84.42 E-value=0.48 Score=45.84 Aligned_cols=118 Identities=17% Similarity=0.167 Sum_probs=61.5
Q ss_pred eeEeeccCCcchhhhhc-cCCCceEEEecccCCC-CchhHHh----hccccc--------hhcccccCCCCCCCccchhh
Q 008748 401 RNVMDMNSNLGGFAAAL-KDKDVWVMNVAPVRMS-ARLKIIY----DRGLIG--------TVHDWCESFSTYPRTYDLLH 466 (555)
Q Consensus 401 rn~~dm~~~~g~faa~l-~~~~~wvmnv~p~~~~-~~l~~i~----~rgl~g--------~~~~~ce~~~typrtydl~h 466 (555)
+.|+|+.||.|||+-++ ....-.|.+| +.. ..+..+- -.||=. =.-+|.+.+..-.++||+|=
T Consensus 146 ~~VLdlf~~~G~~sl~aa~~ga~~V~~v---D~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 146 KTVLNLFSYTAAFSVAAAMGGAMATTSV---DLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 222 (317)
T ss_dssp CEEEEETCTTTHHHHHHHHTTBSEEEEE---ESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CceeecCCCCcHHHHHHHhCCCceEEEe---cCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence 47999999999997544 3334455554 332 2333221 224311 12233333322346899886
Q ss_pred ccc-cccccccCCC----ChhhhhhhhcccccCCceEEEe------cchhHHHHHHHHHhhcCccc
Q 008748 467 AWK-VFSEIEERGC----SFEDLLIEMDRMLRPEGFVIIR------DKSSIINYIRKFITALKWDG 521 (555)
Q Consensus 467 ~~~-~~s~~~~~~c----~~~~~~~e~drilrp~g~~i~r------d~~~~~~~~~~~~~~~~w~~ 521 (555)
.+= -|+.-.+..= ....++-..=++|+|||.+++- +..++...|++.+..-.+..
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~ 288 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTY 288 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEE
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeE
Confidence 541 1321111100 1345666667899999999984 33345555555555444443
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.05 E-value=0.16 Score=49.63 Aligned_cols=107 Identities=12% Similarity=0.153 Sum_probs=53.1
Q ss_pred cCCCcceeEeeccCCcchhhhhccC---CCceEEEecccCCC-CchhHHhh---c-----------cc---cc-hhcccc
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKD---KDVWVMNVAPVRMS-ARLKIIYD---R-----------GL---IG-TVHDWC 452 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~---~~~wvmnv~p~~~~-~~l~~i~~---r-----------gl---~g-~~~~~c 452 (555)
|..|. .|+|++||.|+++.+|.. ..-- |+-++-. ..+.+.-+ + ++ +- ...|.|
T Consensus 96 i~pG~--rVLE~GtGsG~lt~~LAr~vg~~G~---V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~ 170 (324)
T d2b25a1 96 INPGD--TVLEAGSGSGGMSLFLSKAVGSQGR---VISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDIS 170 (324)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHCTTCE---EEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTT
T ss_pred CCCCC--EEEEecccccHHHHHHHHHhCCCcE---EEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchh
Confidence 56665 599999999999988863 2211 2222322 22222111 0 00 11 122333
Q ss_pred cCCCCC-CCccchhhccccccccccCCCChhhhhhhhcccccCCceEEEecchhHHHHHHHHHhhc
Q 008748 453 ESFSTY-PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITAL 517 (555)
Q Consensus 453 e~~~ty-prtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~rd~~~~~~~~~~~~~~~ 517 (555)
+..... ...||.|.. ++- +-..++=++-|+|||||.+++= +-.++.|.+++..|
T Consensus 171 ~~~~~~~~~~fD~V~L-----D~p----~P~~~l~~~~~~LKpGG~lv~~--~P~i~Qv~~~~~~l 225 (324)
T d2b25a1 171 GATEDIKSLTFDAVAL-----DML----NPHVTLPVFYPHLKHGGVCAVY--VVNITQVIELLDGI 225 (324)
T ss_dssp CCC-------EEEEEE-----CSS----STTTTHHHHGGGEEEEEEEEEE--ESSHHHHHHHHHHH
T ss_pred hcccccCCCCcceEee-----cCc----CHHHHHHHHHHhccCCCEEEEE--eCCHHHHHHHHHHH
Confidence 332222 246665542 111 1234677899999999998862 23345555555443
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=83.33 E-value=0.16 Score=47.06 Aligned_cols=89 Identities=18% Similarity=0.341 Sum_probs=47.6
Q ss_pred cCCCcceeEeeccCCcchhhhhccCCCceEEEecccCCCCchhHHhhc---cc--cchhcccccCCCCCC--Cccchhhc
Q 008748 395 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDR---GL--IGTVHDWCESFSTYP--RTYDLLHA 467 (555)
Q Consensus 395 ~~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~~~l~~i~~r---gl--~g~~~~~ce~~~typ--rtydl~h~ 467 (555)
++.+. +|||++||+|-++|.|...- -.|+-++-...+--...+ +. +-+.| ...+..|| ..||.|+.
T Consensus 68 l~~g~--~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~--~d~~~g~~~~~pfD~Iiv 140 (224)
T d1vbfa_ 68 LHKGQ--KVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLIL--GDGTLGYEEEKPYDRVVV 140 (224)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEE--SCGGGCCGGGCCEEEEEE
T ss_pred hcccc--eEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhccccccccc--CchhhcchhhhhHHHHHh
Confidence 55555 79999999999988775421 234444433222211111 00 11111 11222333 25999997
Q ss_pred cccccccccCCCChhhhhhhhcccccCCceEEE
Q 008748 468 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 500 (555)
Q Consensus 468 ~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~ 500 (555)
.+-.. .+.-++=+.|+|||.+|+
T Consensus 141 ~~a~~----------~ip~~l~~qLk~GGrLV~ 163 (224)
T d1vbfa_ 141 WATAP----------TLLCKPYEQLKEGGIMIL 163 (224)
T ss_dssp SSBBS----------SCCHHHHHTEEEEEEEEE
T ss_pred hcchh----------hhhHHHHHhcCCCCEEEE
Confidence 66443 122223356999999887
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.67 E-value=0.16 Score=51.25 Aligned_cols=22 Identities=5% Similarity=-0.025 Sum_probs=19.7
Q ss_pred hhhhhhhhcccccCCceEEEec
Q 008748 481 FEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 481 ~~~~~~e~drilrp~g~~i~rd 502 (555)
+...|-||=|+|||||.+|..|
T Consensus 312 l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 312 LNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp HHHHHHHHHTTCCTTCEEEESS
T ss_pred HHHHHHHHHHhcCCCcEEEEec
Confidence 6778999999999999999865
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.63 E-value=0.098 Score=48.32 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=22.2
Q ss_pred CccchhhccccccccccCCCChhhhhhhhcccccCCceEEE
Q 008748 460 RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 500 (555)
Q Consensus 460 rtydl~h~~~~~s~~~~~~c~~~~~~~e~drilrp~g~~i~ 500 (555)
.+||.|+..+.... +.-++=+.|+|||.+|+
T Consensus 149 ~~fD~I~~~~~~~~----------ip~~l~~~LkpGG~LV~ 179 (224)
T d1i1na_ 149 APYDAIHVGAAAPV----------VPQALIDQLKPGGRLIL 179 (224)
T ss_dssp CCEEEEEECSBBSS----------CCHHHHHTEEEEEEEEE
T ss_pred hhhhhhhhhcchhh----------cCHHHHhhcCCCcEEEE
Confidence 47999997765442 22344478999999997
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=81.59 E-value=0.17 Score=49.07 Aligned_cols=147 Identities=9% Similarity=0.023 Sum_probs=74.9
Q ss_pred CCCcceeEeeccCCcchhhhhccCCCceEEEecccCCC-CchhHHhh------cc------ccchhcccccCCCCCCCcc
Q 008748 396 QKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD------RG------LIGTVHDWCESFSTYPRTY 462 (555)
Q Consensus 396 ~~~~~rn~~dm~~~~g~faa~l~~~~~wvmnv~p~~~~-~~l~~i~~------rg------l~g~~~~~ce~~~typrty 462 (555)
....-++|+.+++|-|+.+..+...+-. .+|+=++-. .-+.+.-+ .| +==+..|+-+-....+++|
T Consensus 74 ~~~~pk~VLiiG~G~G~~~~~ll~~~~~-~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~y 152 (312)
T d1uira_ 74 THPEPKRVLIVGGGEGATLREVLKHPTV-EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERY 152 (312)
T ss_dssp HSSCCCEEEEEECTTSHHHHHHTTSTTC-CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCE
T ss_pred hCCCcceEEEeCCCchHHHHHHHhcCCc-ceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcc
Confidence 4567899999999999999888765321 233322221 11111100 00 0011223333333457899
Q ss_pred chhhcccc--ccccccCCCCh--hhhhhhhcccccCCceEEEe------cchhHHHHHHHHHhhcCccceeccccccccc
Q 008748 463 DLLHAWKV--FSEIEERGCSF--EDLLIEMDRMLRPEGFVIIR------DKSSIINYIRKFITALKWDGWLSEVEPRIDA 532 (555)
Q Consensus 463 dl~h~~~~--~s~~~~~~c~~--~~~~~e~drilrp~g~~i~r------d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 532 (555)
|+|-.+.. +... .....+ .+.+-.+-|+|+|||.++.. ...++...|.+.+++.=..+..... .-|
T Consensus 153 DvIi~D~~dp~~~~-~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~---~vP 228 (312)
T d1uira_ 153 DVVIIDLTDPVGED-NPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKN---HIP 228 (312)
T ss_dssp EEEEEECCCCBSTT-CGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEE---EEG
T ss_pred cEEEEeCCCccccc-chhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEEe---eeC
Confidence 99985531 1100 000111 35667889999999999974 2345667776655544334322110 001
Q ss_pred CCCCCceEEEEEecc
Q 008748 533 LSSSEERVLIAKKKL 547 (555)
Q Consensus 533 ~~~~~~~~l~~~k~~ 547 (555)
.-.....+++|.|..
T Consensus 229 s~~~~w~f~~aS~~~ 243 (312)
T d1uira_ 229 GFFLNFGFLLASDAF 243 (312)
T ss_dssp GGTEEEEEEEEESSS
T ss_pred CcCCCCEeEEEeCCC
Confidence 001234678888763
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.29 E-value=0.25 Score=47.95 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=18.9
Q ss_pred hhhhhhhhcccccCCceEEEec
Q 008748 481 FEDLLIEMDRMLRPEGFVIIRD 502 (555)
Q Consensus 481 ~~~~~~e~drilrp~g~~i~rd 502 (555)
+...|.||=|.|+|||.+|+-+
T Consensus 245 ~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 245 VDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp HHHHHHHHHTTCCTTCEEEESS
T ss_pred HHHHHHHHHHhCCCCcEEEEec
Confidence 5678899999999999999743
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=81.17 E-value=0.53 Score=41.14 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=54.7
Q ss_pred CCEEEEECCCC-cHHHHHHhcC----CCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC------CCCCCccEEE
Q 008748 156 IRNVLDVGCGV-ASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP------YPSRSFELAH 224 (555)
Q Consensus 156 ~~~VLDIGCGt-G~~a~~La~~----~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp------~~d~sFDlVv 224 (555)
..+||=+|||. |.++..+++. .|+++|. ++...+.+++.|....+. .....+. .....||+|+
T Consensus 28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~-----~~~r~~~a~~lGa~~~i~-~~~~~~~~~v~~~t~g~G~D~vi 101 (174)
T d1jqba2 28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS-----RPICVEAAKFYGATDILN-YKNGHIEDQVMKLTNGKGVDRVI 101 (174)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECC-----CHHHHHHHHHHTCSEEEC-GGGSCHHHHHHHHTTTSCEEEEE
T ss_pred CCEEEEEcCCcchhhhhhhhhcccccccccccc-----hhhhHHHHHhhCcccccc-ccchhHHHHHHHHhhccCcceEE
Confidence 35688899985 6777777763 4556654 455567777777543221 1111110 1224599888
Q ss_pred ecccccccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 225 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 225 ~s~~~l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
-.-. . ...+.+..++|+|+|.+++..
T Consensus 102 d~~g-~------~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 102 MAGG-G------SETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp ECSS-C------TTHHHHHHHHEEEEEEEEECC
T ss_pred EccC-C------HHHHHHHHHHHhcCCEEEEEe
Confidence 4331 1 236788899999999999865
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.10 E-value=0.38 Score=41.30 Aligned_cols=91 Identities=12% Similarity=0.092 Sum_probs=51.1
Q ss_pred CCEEEEECCCC-cHHHHHHhcCCCccccCChhhhhHHHHHHHHHcCCCeEEEEeCCCCCC-----CCCCCccEEEecccc
Q 008748 156 IRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----YPSRSFELAHCSRCR 229 (555)
Q Consensus 156 ~~~VLDIGCGt-G~~a~~La~~~V~~vdis~~dls~a~i~~A~~rg~~v~~~~~d~~~Lp-----~~d~sFDlVv~s~~~ 229 (555)
..+||=+|+|. |.++..+++. .+..+...+.++...+.+++.|....+. ....+.. ...+.+|.|.++..
T Consensus 28 g~~VlV~GaG~vG~~~~~~ak~--~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~-~~~~~~~~~~~~~~~g~~~~i~~~~~- 103 (166)
T d1llua2 28 GQWVAISGIGGLGHVAVQYARA--MGLHVAAIDIDDAKLELARKLGASLTVN-ARQEDPVEAIQRDIGGAHGVLVTAVS- 103 (166)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHTTCSEEEE-TTTSCHHHHHHHHHSSEEEEEECCSC-
T ss_pred CCEEEEeeccccHHHHHHHHHH--cCCccceecchhhHHHhhhccCcccccc-ccchhHHHHHHHhhcCCccccccccc-
Confidence 45788899874 4455555543 1223333345566667787777543332 1111110 11233455554431
Q ss_pred cccccchHHHHHHHHhhcCCCcEEEEEc
Q 008748 230 IDWLQRDGILLLELDRLLRPGGYFVYSS 257 (555)
Q Consensus 230 l~~~~d~~~~L~el~RvLkPGG~lvis~ 257 (555)
...+....+.|+|||.+++..
T Consensus 104 -------~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 104 -------NSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp -------HHHHHHHHTTEEEEEEEEECC
T ss_pred -------chHHHHHHHHhcCCcEEEEEE
Confidence 346888999999999999865
|