Citrus Sinensis ID: 008754

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550----
MKNSVSDHSFYIESDEEEDEEKVFDVNGGEEDQEENDGNDSDSSAENQQQTHPGSYNTSWPQSYRQSIDLYSSVPSPSLTFLGTPSLSRLSSSFLSSSLTRRHTPESLAATTKPLLPTVAYEQPQQQRRSSHTLLPPFPSRRSSLIKDSKSSRVSHEHPISRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHLKSHIYAICIRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSILRGKATRLQVALCVIIIVAGVVSSAIGSYSAILKIVESLSS
cccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccccccccEEEEEccccHHHHHHccccccccccccccccccccccccccccccccccccccccHHHccHHHccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHEEEEHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcHHccEEEHHHHHHHHHHHHEEEEEEccHHHHHHcccccccccccccccccEEEEEEEEEEEEHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mknsvsdhsfyiesdeeedeekvfdvnggeedqeendgndsdssaenqqqthpgsyntswpqsyRQSIDlyssvpspsltflgtpslsrlsssflsssltrrhtpeslaattkpllptvayeqpqqqrrsshtllppfpsrrsslikdskssrvshehpisrQSSYAQALLNGMNVLCGVgilstpyaakeggwFGLLILVAFGVLSFYTGILLRRcldsepgletypdigqaafgtAGRIAVSVILYAELYACCIEYIILesdnlsslfpnahlsfggfylnsHHLFALMTTLAVlptcwlrdLTVLSYISAGGVIASILVVLCLFWVGLVdqvnihskgtplnlatlpVAIGLYgycysghavfpniytsmaqpnqfpkVLITCFLICTAMYAGVAYMGYTMfgestlsqftlnmpqdlVATKIAVWTTVVNPFTKYALTISPVAMSleelipsnhlkshIYAICIRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSILRGKATRLQVALCVIIIVAGVVSSAIGSYSAILKIVESLSS
mknsvsdhsfyiesdeeedeeKVFDVNGGEEDQEENDGNDSDSSAENQQQTHPGSYNTSWPQSYRQSIDLYSSVPSPSLTFLGTPSLSRLSSSFLSSSLTRRHTPeslaattkpllpTVAYeqpqqqrrsshtllppfpsrrsslikdskssrvshehpiSRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHLKSHIYAICIRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSILRGKATRLQVALCVIIIVAGVVSSAIGSYSAILKIVESLSS
MKNSVSDHSFYIesdeeedeeKVFDVnggeedqeendgndsdssAENQQQTHPGSYNTSWPQSYRQSIDLYSSVPSPSLTFLGTPslsrlsssflssslTRRHTPESLAATTKPLLPTVAYEQPQQQRRSSHTLLPPFPSRRSSLIKDSKSSRVSHEHPISRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHLKSHIYAICIRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSILRGKATRLQVALCviiivagvvssaigsysaiLKIVESLSS
*********************************************************************************************************************************************************************YAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHLKSHIYAICIRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSILRGKATRLQVALCVIIIVAGVVSSAIGSYSAILKIV*****
*********************************************************************************************************************************************************************YAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHLKSHIYAICIRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSILRGKATRLQVALCVIIIVAGVVSSAIGSYSAILKIVESL**
***********************FDVNG******************************SWPQSYRQSIDLYSSVPSPSLTFLGTPSLSRLSSSFLSSSLTRRHTPESLAATTKPLLPTVAY**********HTLLPPFPSRRS********************SSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHLKSHIYAICIRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSILRGKATRLQVALCVIIIVAGVVSSAIGSYSAILKIVESLSS
***************E*****************************************TSWPQSYRQSIDLYSSVPSPSLTFLGTPSLSRLSS******LT******************************************************SHEHPISRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHLKSHIYAICIRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSILRGKATRLQVALCVIIIVAGVVSSAIGSYSAILKIVESLSS
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MKNSVSDHSFYIESDEEEDEEKVFDVNGGEEDQEENDGNDSDSSAENQQQTHPGSYNTSWPQSYRQSIDLYSSVPSPSLTFLGTPSLSRLSSSFLSSSLTRRHTPESLAATTKPLLPTVAYEQPQQQRRSSHTLLPPFPSRRSSLIKDSKSSRVSHEHPISRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHLKSHIYAICIRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSILRGKATRLQVALCVIIIVAGVVSSAIGSYSAILKIVESLSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query554 2.2.26 [Sep-21-2011]
P47082602 Vacuolar amino acid trans yes no 0.669 0.616 0.318 6e-44
P34579486 Vesicular GABA transporte yes no 0.783 0.893 0.260 2e-28
Q6PF45518 Vesicular inhibitory amin N/A no 0.698 0.747 0.261 1e-22
Q6DIV6518 Vesicular inhibitory amin yes no 0.691 0.739 0.255 1e-20
Q9H598525 Vesicular inhibitory amin yes no 0.709 0.748 0.252 8e-19
Q95KE2525 Vesicular inhibitory amin N/A no 0.720 0.76 0.248 1e-18
O35633525 Vesicular inhibitory amin yes no 0.709 0.748 0.248 2e-18
O35458525 Vesicular inhibitory amin yes no 0.709 0.748 0.248 2e-18
O22719451 Lysine histidine transpor no no 0.718 0.882 0.247 4e-15
Q3USY0453 Putative sodium-coupled n no no 0.712 0.871 0.223 7e-14
>sp|P47082|AVT1_YEAST Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  179 bits (454), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 130/408 (31%), Positives = 205/408 (50%), Gaps = 37/408 (9%)

Query: 163 QSSYAQALLNGMNVLCGVGILSTPYAAKEGGW-FGLLILVAFGVLSFYTGILLRRCLDSE 221
           QS+  Q + N +NVL G+G+L+ P   K  GW  GL +L  F + +F T  LL RCLD++
Sbjct: 207 QSTAPQTIFNSINVLIGIGLLALPLGLKYAGWVIGLTMLAIFALATFCTAELLSRCLDTD 266

Query: 222 PGLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFY 281
           P L +Y D+G AAFGT GR  +S +   +L    +  +IL  D+L++LFP    +F    
Sbjct: 267 PTLISYADLGYAAFGTKGRALISALFTLDLLGSGVSLVILFGDSLNALFPQYSTTF---- 322

Query: 282 LNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQ------V 335
                 F +++   V P  ++  L+VLS IS  G++++   VL +   GL         V
Sbjct: 323 ------FKIVSFFIVTPPVFI-PLSVLSNISLLGILSTTGTVLVICCCGLYKSSSPGSLV 375

Query: 336 N-IHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMY 394
           N + +   P++L  L ++IGL   C+ GHAVFPN+ T M  P++F   L T + I +   
Sbjct: 376 NPMETSMWPIDLKHLCLSIGLLSACWGGHAVFPNLKTDMRHPDKFKDCLKTTYKITSVTD 435

Query: 395 AGVAYMGYTMFGESTLSQFTLNM------PQDLVATKIAVWTTVVNPFTKYALTISPVAM 448
            G A +G+ MFG     + T N+      P+  V   I+   T++ P  K  L   P+  
Sbjct: 436 IGTAVIGFLMFGNLVKDEITKNVLLTEGYPK-FVYGLISALMTII-PIAKTPLNARPIVS 493

Query: 449 SLEELIPSNHLKSHIYAICIRTA--------LVISTLLVGLAIPF--FGLVMSLIGSLLT 498
            L+ L+   H+     AI  R A        + I+ + V +AI F  F  +++ +G+ L 
Sbjct: 494 VLDVLMNVQHIDEAASAIKRRAAKGLQVFNRIFINVVFVLIAINFPEFDKIIAFLGAGLC 553

Query: 499 MLVTLILPCLCFLSILRGKATRLQVALCVIIIVAGVVSSAIGSYSAIL 546
             + LILPC  +L + +      +   C + I   VV S +G  +AI+
Sbjct: 554 FTICLILPCWFYLRLCKTTIKPWERVACHVTICISVVLSTLGVGAAII 601
Required for the vacuolar uptake of large neutral amino acids including tyrosine, glutamine, asparagine, isoleucine and leucine. Requires ATP for function.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
>sp|P34579|UNC47_CAEEL Vesicular GABA transporter OS=Caenorhabditis elegans GN=unc-47 PE=1 SV=2 Back     alignment and function description
>sp|Q6PF45|VIAAT_XENLA Vesicular inhibitory amino acid transporter OS=Xenopus laevis GN=slc32a1 PE=2 SV=1 Back     alignment and function description
>sp|Q6DIV6|VIAAT_XENTR Vesicular inhibitory amino acid transporter OS=Xenopus tropicalis GN=slc32a1 PE=2 SV=1 Back     alignment and function description
>sp|Q9H598|VIAAT_HUMAN Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=1 SV=2 Back     alignment and function description
>sp|Q95KE2|VIAAT_MACFA Vesicular inhibitory amino acid transporter OS=Macaca fascicularis GN=SLC32A1 PE=2 SV=1 Back     alignment and function description
>sp|O35633|VIAAT_MOUSE Vesicular inhibitory amino acid transporter OS=Mus musculus GN=Slc32a1 PE=1 SV=3 Back     alignment and function description
>sp|O35458|VIAAT_RAT Vesicular inhibitory amino acid transporter OS=Rattus norvegicus GN=Slc32a1 PE=1 SV=1 Back     alignment and function description
>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2 Back     alignment and function description
>sp|Q3USY0|S38AB_MOUSE Putative sodium-coupled neutral amino acid transporter 11 OS=Mus musculus GN=Slc38a11 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query554
225448988551 PREDICTED: vacuolar amino acid transport 0.983 0.989 0.779 0.0
296085988566 unnamed protein product [Vitis vinifera] 0.983 0.962 0.759 0.0
297827497549 predicted protein [Arabidopsis lyrata su 0.989 0.998 0.756 0.0
30687791550 transmembrane amino acid transporter-lik 0.990 0.998 0.738 0.0
15292735550 unknown protein [Arabidopsis thaliana] 0.990 0.998 0.736 0.0
224097816554 amino acid transporter [Populus trichoca 0.998 0.998 0.778 0.0
356535615545 PREDICTED: vacuolar amino acid transport 0.974 0.990 0.740 0.0
356576242544 PREDICTED: vacuolar amino acid transport 0.972 0.990 0.740 0.0
357443167550 Amino acid transporter [Medicago truncat 0.965 0.972 0.717 0.0
449464366554 PREDICTED: vacuolar amino acid transport 0.981 0.981 0.709 0.0
>gi|225448988|ref|XP_002270908.1| PREDICTED: vacuolar amino acid transporter 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  844 bits (2180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/559 (77%), Positives = 479/559 (85%), Gaps = 14/559 (2%)

Query: 1   MKNSVSDHSFYIESDEEEDEEKVFDVNGGEEDQEENDGNDSDSS---AENQQQTHPGSYN 57
           M NSVSDHSFYIESDEE++E           ++  NDG+DSDSS    E +QQ  P SYN
Sbjct: 1   MNNSVSDHSFYIESDEEDEENM--------SNRGNNDGHDSDSSHSSTEIEQQNKPSSYN 52

Query: 58  TSWPQSYRQSIDLYSSVPSPSLTFLGTPSLSRLSSSFLSSSLTRRHTPESLAATTKPLLP 117
           TSWPQSYRQSIDLYSSVPSPS+ FLGTPSLSRL SSFLSSSLTRRHTPE L++  KPLLP
Sbjct: 53  TSWPQSYRQSIDLYSSVPSPSIGFLGTPSLSRLGSSFLSSSLTRRHTPEVLSSLVKPLLP 112

Query: 118 TVAYEQPQQQRRSSHTLLPPFPSRRSSLIK---DSKSSRVSHEHPISRQSSYAQALLNGM 174
           +VA EQ +QQRRSSH+LLPP PSRRS + K   D K  +VSHE PISRQSSY QA+LNGM
Sbjct: 113 SVADEQQEQQRRSSHSLLPPIPSRRSYIKKAGLDQKPHKVSHEVPISRQSSYGQAVLNGM 172

Query: 175 NVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAA 234
           N+LCGVGILSTPYA KEGGW GL IL+ F +LSFYTGILLR CLDS PGLETYPDIGQAA
Sbjct: 173 NILCGVGILSTPYAVKEGGWVGLSILLIFALLSFYTGILLRYCLDSAPGLETYPDIGQAA 232

Query: 235 FGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTL 294
           FGT GR A+S+ILY ELYACC+EYIILESDNLSSLFPNAHL+FG F+L SHHLFALMT L
Sbjct: 233 FGTTGRFAISIILYVELYACCVEYIILESDNLSSLFPNAHLNFGVFHLGSHHLFALMTAL 292

Query: 295 AVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQVNIHSKGTPLNLATLPVAIG 354
           AVLPT WLRDL+VLSYISAGGV+ASILVVLCLFWVGLVDQV   S+GT LNL  LPVAIG
Sbjct: 293 AVLPTVWLRDLSVLSYISAGGVVASILVVLCLFWVGLVDQVGFQSEGTVLNLTNLPVAIG 352

Query: 355 LYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTMFGESTLSQFT 414
           LYGYCYSGHAVFPNIYTSMA+P+Q+P VL+  F ICT +YAGVA +GY MFGESTLSQFT
Sbjct: 353 LYGYCYSGHAVFPNIYTSMAKPSQYPSVLLISFAICTLLYAGVAVLGYQMFGESTLSQFT 412

Query: 415 LNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHLKSHIYAICIRTALVI 474
           LNMPQDLVA+KIAVWTTVVNPFTKYALT+SPVAMSLEELIPSN  KSH+YAI IRTALVI
Sbjct: 413 LNMPQDLVASKIAVWTTVVNPFTKYALTMSPVAMSLEELIPSNQSKSHMYAILIRTALVI 472

Query: 475 STLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSILRGKATRLQVALCVIIIVAGV 534
           STLLVGL +PFFGLVM+LIGSLLTMLVTLILPC CFLSILRGK TR Q +LC++II  GV
Sbjct: 473 STLLVGLTVPFFGLVMALIGSLLTMLVTLILPCACFLSILRGKITRFQGSLCILIIAVGV 532

Query: 535 VSSAIGSYSAILKIVESLS 553
           VSSA G+YSA+ KI+E LS
Sbjct: 533 VSSAFGTYSALAKIIEKLS 551

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296085988|emb|CBI31429.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297827497|ref|XP_002881631.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297327470|gb|EFH57890.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30687791|ref|NP_850312.1| transmembrane amino acid transporter-like protein [Arabidopsis thaliana] gi|330254544|gb|AEC09638.1| transmembrane amino acid transporter-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15292735|gb|AAK92736.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224097816|ref|XP_002311078.1| amino acid transporter [Populus trichocarpa] gi|222850898|gb|EEE88445.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356535615|ref|XP_003536340.1| PREDICTED: vacuolar amino acid transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356576242|ref|XP_003556242.1| PREDICTED: vacuolar amino acid transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357443167|ref|XP_003591861.1| Amino acid transporter [Medicago truncatula] gi|355480909|gb|AES62112.1| Amino acid transporter [Medicago truncatula] Back     alignment and taxonomy information
>gi|449464366|ref|XP_004149900.1| PREDICTED: vacuolar amino acid transporter 1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query554
TAIR|locus:2056118550 AT2G39130 [Arabidopsis thalian 0.918 0.925 0.733 2.4e-195
TAIR|locus:2082652546 AT3G54830 "AT3G54830" [Arabido 0.877 0.890 0.641 1.3e-162
TAIR|locus:2185158550 AT5G02180 [Arabidopsis thalian 0.821 0.827 0.523 5.2e-129
TAIR|locus:2185143526 AT5G02170 [Arabidopsis thalian 0.660 0.695 0.581 1.2e-125
TAIR|locus:2083529524 AT3G09330 "AT3G09330" [Arabido 0.823 0.870 0.494 2.3e-119
TAIR|locus:2083549528 AT3G09340 "AT3G09340" [Arabido 0.823 0.863 0.492 1.3e-118
TAIR|locus:2063255536 AT2G41190 [Arabidopsis thalian 0.763 0.789 0.484 6.2e-112
TAIR|locus:2087012405 AT3G28960 "AT3G28960" [Arabido 0.631 0.864 0.414 8.2e-83
TAIR|locus:2150911423 AT5G15240 [Arabidopsis thalian 0.671 0.879 0.408 1.4e-80
TAIR|locus:2149045426 AT5G16740 [Arabidopsis thalian 0.658 0.856 0.367 1.5e-67
TAIR|locus:2056118 AT2G39130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1892 (671.1 bits), Expect = 2.4e-195, P = 2.4e-195
 Identities = 374/510 (73%), Positives = 408/510 (80%)

Query:    46 ENQQQTHPGSYNTSWPQSYRQSIDLYSSVPSPSLTFLGTPXXXXXXXXXXXXXXTRRHTP 105
             ENQ    P SY T+WPQSYRQSIDLYSSVPSP + FLG                 RRHTP
Sbjct:    41 ENQAHIKPSSYTTAWPQSYRQSIDLYSSVPSPGIGFLGNNSMTRFGSSFLSSGLIRRHTP 100

Query:   106 ESLAATTKPLLPTVAYEQPQQQRR-SSHTLLPPFPSRRSSLIKDSKSSRVSHEHPISRQS 164
             ESL   TKPLL   A EQ   + R SS  LL P PSRR S+ KD KSS VSHE P+SR S
Sbjct:   101 ESLPTVTKPLLEEQADEQALPKHRLSSQGLLSPIPSRRGSMRKDEKSSMVSHEIPMSRNS 160

Query:   165 SYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGL 224
             SY QA+LNG+NVLCGVGILSTPYAAKEGGW GL+IL  +G+LSFYTGILLR CLDSE  L
Sbjct:   161 SYGQAVLNGLNVLCGVGILSTPYAAKEGGWLGLMILFVYGLLSFYTGILLRYCLDSESDL 220

Query:   225 ETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNS 284
             ETYPDIGQAAFGT GRI VS++LY ELYACC+EYIILESDNLSSL+PNA LS GGF L++
Sbjct:   221 ETYPDIGQAAFGTTGRIFVSIVLYLELYACCVEYIILESDNLSSLYPNAALSIGGFQLDA 280

Query:   285 HHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILVVLCLFWVGLVDQVNIHSKGTPL 344
              HLFAL+TTLAVLPT WLRDL+VLSYISAGGVIAS+LVVLCLFW+GLVD+V IHSKGT L
Sbjct:   281 RHLFALLTTLAVLPTVWLRDLSVLSYISAGGVIASVLVVLCLFWIGLVDEVGIHSKGTTL 340

Query:   345 NLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFPKVLITCFLICTAMYAGVAYMGYTM 404
             NL+TLPVAIGLYGYCYSGHAVFPNIYTSMA+P+Q+P VL+TCF ICT MYAGVA MGYTM
Sbjct:   341 NLSTLPVAIGLYGYCYSGHAVFPNIYTSMAKPSQYPAVLLTCFGICTLMYAGVAVMGYTM 400

Query:   405 FGESTLSQFTLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNHLKSHIY 464
             FGEST SQFTLN+PQDL+ATKIAVWTTVVNPFTKYALTISPVAMSLEELIPS H++SH Y
Sbjct:   401 FGESTQSQFTLNLPQDLIATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSRHIRSHWY 460

Query:   465 AICIRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSILRGKATRLQVA 524
             AI IRT LV STLLVGLAIPFFGLVMSLIGSLLTMLVTLILP  CFLSI+R K T  Q+ 
Sbjct:   461 AIGIRTLLVFSTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPPACFLSIVRRKVTPTQMM 520

Query:   525 LCXXXXXXXXXXXXXXXXXXXLKIVESLSS 554
             LC                    KIVE L++
Sbjct:   521 LCVLIIIVGAISSVIGSYSALSKIVEKLTN 550
GO:0005886 "plasma membrane" evidence=ISM
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2082652 AT3G54830 "AT3G54830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185158 AT5G02180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185143 AT5G02170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083529 AT3G09330 "AT3G09330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083549 AT3G09340 "AT3G09340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063255 AT2G41190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087012 AT3G28960 "AT3G28960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150911 AT5G15240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149045 AT5G16740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query554
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 1e-64
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 6e-32
PTZ00206467 PTZ00206, PTZ00206, amino acid transporter; Provis 1e-10
PLN03074473 PLN03074, PLN03074, auxin influx permease; Provisi 1e-09
TIGR00837381 TIGR00837, araaP, aromatic amino acid transport pr 2e-07
pfam03222393 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine perme 2e-04
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  215 bits (551), Expect = 1e-64
 Identities = 119/413 (28%), Positives = 196/413 (47%), Gaps = 35/413 (8%)

Query: 162 RQSSYAQALLNGMNVLCGVGILSTPYAAKEGGW-FGLLILVAFGVLSFYTGILLRRCLD- 219
              S  QA+ N +  + G G+LS PYA K+ GW  GL++LV  G++S YT  LL +C   
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 220 ----SEPGLETYPDIGQAAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHL 275
                    ++Y D+G   FG  G++ +   +   L+  CI Y+I   DNL ++F     
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFD---- 116

Query: 276 SFGGFYLNSHHLFALMTTLAVLPTCWLRD---LTVLSYISAGGVIASILVVLCLFWVGLV 332
           SF      S   F ++  L  +P  ++ +   L++LS ++A   +  +++VL +  +G++
Sbjct: 117 SFFDTCHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGVL 176

Query: 333 DQVNIHSKGTP--LNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQF---PKVLITCF 387
               + S G    + LA L +AIG+  + + GHAV   I  +M  P++F    KVL+T  
Sbjct: 177 TAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAI 236

Query: 388 LICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTVVNPFTKYALTISPVA 447
           +I T +Y  V  +GY  FG +      LN+P+      IA    V++    Y L   P+ 
Sbjct: 237 IIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFPIR 296

Query: 448 MSLEELI---------PSNHLKSHIYAICIRTALVISTLLVGLAIPFFGLVMSLIGSLLT 498
             +E L+                 +    IR+ LV+ T L+ +++PF G  +SL+G+   
Sbjct: 297 QIVENLLFRKGASGKHNPKSKLLRVV---IRSGLVVITYLIAISVPFLGDFLSLVGATSG 353

Query: 499 MLVTLILPCLCFLSILR-----GKATRLQVALCVIIIVAGVVSSAIGSYSAIL 546
             +T ILP L  L + +      +       L VI IV G++  A G    I+
Sbjct: 354 APLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional Back     alignment and domain information
>gnl|CDD|233146 TIGR00837, araaP, aromatic amino acid transport protein Back     alignment and domain information
>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 554
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PLN03074473 auxin influx permease; Provisional 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.94
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.93
PRK10483414 tryptophan permease; Provisional 99.93
PRK09664415 tryptophan permease TnaB; Provisional 99.92
PRK15132403 tyrosine transporter TyrP; Provisional 99.92
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.9
PRK13629443 threonine/serine transporter TdcC; Provisional 99.85
TIGR00814397 stp serine transporter. The HAAAP family includes 99.84
PRK10655438 potE putrescine transporter; Provisional 99.8
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.79
PRK10249458 phenylalanine transporter; Provisional 99.78
PRK11021410 putative transporter; Provisional 99.77
PRK15049499 L-asparagine permease; Provisional 99.77
TIGR00930 953 2a30 K-Cl cotransporter. 99.77
PRK10644445 arginine:agmatin antiporter; Provisional 99.77
PRK10746461 putative transport protein YifK; Provisional 99.76
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.75
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.75
PRK11387471 S-methylmethionine transporter; Provisional 99.75
TIGR00909429 2A0306 amino acid transporter. 99.75
PRK10238456 aromatic amino acid transporter; Provisional 99.74
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.74
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.74
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.73
PRK10836489 lysine transporter; Provisional 99.73
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.73
PRK10580457 proY putative proline-specific permease; Provision 99.72
TIGR00913478 2A0310 amino acid permease (yeast). 99.71
TIGR00911501 2A0308 L-type amino acid transporter. 99.71
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.7
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.69
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.69
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.68
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.63
COG0833541 LysP Amino acid transporters [Amino acid transport 99.57
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.55
COG0531466 PotE Amino acid transporters [Amino acid transport 99.52
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.48
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.45
PRK15238496 inner membrane transporter YjeM; Provisional 99.45
PF03845320 Spore_permease: Spore germination protein; InterPr 99.43
KOG1286554 consensus Amino acid transporters [Amino acid tran 99.4
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.37
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 99.19
KOG3832319 consensus Predicted amino acid transporter [Genera 99.07
KOG1289550 consensus Amino acid transporters [Amino acid tran 98.89
COG1457442 CodB Purine-cytosine permease and related proteins 98.75
COG3949349 Uncharacterized membrane protein [Function unknown 98.75
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.72
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 98.71
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 98.71
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.69
PRK11375484 allantoin permease; Provisional 98.57
PRK12488549 acetate permease; Provisional 98.54
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.47
TIGR00813407 sss transporter, SSS family. have different number 98.45
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.41
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.4
PRK11017404 codB cytosine permease; Provisional 98.38
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 98.28
PRK09395551 actP acetate permease; Provisional 98.26
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.26
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.19
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 98.14
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 98.02
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.97
PRK00701439 manganese transport protein MntH; Reviewed 97.87
COG0733439 Na+-dependent transporters of the SNF family [Gene 97.8
KOG1288 945 consensus Amino acid transporters [Amino acid tran 97.76
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 97.71
PRK15419502 proline:sodium symporter PutP; Provisional 97.68
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.67
PRK10484523 putative transporter; Provisional 97.67
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 97.48
PF01566358 Nramp: Natural resistance-associated macrophage pr 97.32
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.28
PHA02764399 hypothetical protein; Provisional 96.8
COG4147529 DhlC Predicted symporter [General function predict 96.67
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 96.45
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 96.44
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 96.29
COG1966 575 CstA Carbon starvation protein, predicted membrane 96.12
PRK15015 701 carbon starvation protein A; Provisional 96.04
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 95.56
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 94.41
KOG2466572 consensus Uridine permease/thiamine transporter/al 94.08
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 93.41
KOG1291503 consensus Mn2+ and Fe2+ transporters of the NRAMP 93.27
PRK15433439 branched-chain amino acid transport system 2 carri 92.29
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 92.13
PLN00151 852 potassium transporter; Provisional 91.53
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 90.66
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 89.02
PRK15433439 branched-chain amino acid transport system 2 carri 88.46
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 87.36
KOG1289550 consensus Amino acid transporters [Amino acid tran 85.61
PF10446458 DUF2457: Protein of unknown function (DUF2457); In 85.07
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 80.59
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.6e-53  Score=430.88  Aligned_cols=382  Identities=25%  Similarity=0.388  Sum_probs=337.8

Q ss_pred             CCCCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhhh-----CCCCCChHHHHH--
Q 008754          161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWF-GLLILVAFGVLSFYTGILLRRCLDS-----EPGLETYPDIGQ--  232 (554)
Q Consensus       161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~-g~ill~~~~~ls~~t~~~L~~~~~~-----~~~~~~y~~l~~--  232 (554)
                      ++..|..++..|+++.++|+|+|++|+||+++||+ |.+..++.++++.||++.|++|...     .....+|++.++  
T Consensus        44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a  123 (449)
T KOG1304|consen   44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA  123 (449)
T ss_pred             CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence            56789999999999999999999999999999999 9999999999999999999998632     223467777754  


Q ss_pred             --------HHhchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccC
Q 008754          233 --------AAFGTAGRIAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRD  304 (554)
Q Consensus       233 --------~~~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~  304 (554)
                              +.+|+++|+++++.+++.++|.|++|++++++++.++++.....     ..+...+.++..+..++++++|+
T Consensus       124 ~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~-----~~s~~~~i~~~~~~~lll~~Ir~  198 (449)
T KOG1304|consen  124 MEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPG-----VLSVRLYILIQLPPLLLLNLIRN  198 (449)
T ss_pred             HcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCC-----CccHHHHHHHHHHHHHHHHHHHh
Confidence                    45589999999999999999999999999999999999732211     11245677788888999999999


Q ss_pred             CchhhHhHHHHHHHHHHHHHHHHhhhcccccccCCCCCccccCchhHHHHHHHHhhccccchhhHHhhccCCCCch---h
Q 008754          305 LTVLSYISAGGVIASILVVLCLFWVGLVDQVNIHSKGTPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQFP---K  381 (554)
Q Consensus       305 l~~l~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~~~---~  381 (554)
                      ++.++.+|.++.++.++.+++++++.+.+.++.+..+...++.+++.++|+.+|||.|+.++.++.++||+|++++   +
T Consensus       199 Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~g  278 (449)
T KOG1304|consen  199 LKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPFG  278 (449)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCccc
Confidence            9999999999999888877777777666665555555566799999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhcCCCchhHHHHHHHHHHHHhhhhhhcchhhhHHHHHHhhcCCCC--C
Q 008754          382 VLITCFLICTAMYAGVAYMGYTMFGESTLSQFTLNMPQDLVATKIAVWTTVVNPFTKYALTISPVAMSLEELIPSNH--L  459 (554)
Q Consensus       382 ~~~~s~~~~~~lY~~vg~~gy~~fG~~~~~~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~l~~~~--~  459 (554)
                      ++..++.+++++|..+|++||+.||+++++.+++|+|+ .++.....++..+.++.+||++++|..+.+|+.+.++.  .
T Consensus       279 VLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~  357 (449)
T KOG1304|consen  279 VLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSEN  357 (449)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcc
Confidence            99999999999999999999999999999999999999 67777888999999999999999999999998655432  2


Q ss_pred             CcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhHHHHhhhhHHHHHHhcCcc---chHHHHHHHHHHHHHHHH
Q 008754          460 KSHIYAICIRTALVISTLLVGLAIPFFGLVMSLIGSLLTMLVTLILPCLCFLSILRGKA---TRLQVALCVIIIVAGVVS  536 (554)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~~vA~~vp~~~~vi~l~Gs~~~~~~~~ilP~l~~l~~~~~~~---~~~~~~~~~~ii~~g~~~  536 (554)
                      +.++..+.+|..+++.++.+|..+|+++.+++++|++++..+++++|++++++.++++.   .+|+.+.+.+++++|++.
T Consensus       358 ~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~  437 (449)
T KOG1304|consen  358 RKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFG  437 (449)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHH
Confidence            34577899999999999999999999999999999999999999999999999987654   468889999999999999


Q ss_pred             hHHhHHHHHHHH
Q 008754          537 SAIGSYSAILKI  548 (554)
Q Consensus       537 ~v~gty~si~~i  548 (554)
                      ++.|||.++.++
T Consensus       438 ~v~Gty~si~~i  449 (449)
T KOG1304|consen  438 FVYGTYTSIKEI  449 (449)
T ss_pred             HHHHHhhhhhcC
Confidence            999999999764

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query554
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 45.2 bits (106), Expect = 5e-05
 Identities = 72/467 (15%), Positives = 128/467 (27%), Gaps = 162/467 (34%)

Query: 7   DHSFYIESDEEEDEEKVFDVNGGEEDQEENDGNDSDSSAENQQQTHPGSYNTSWPQSYRQ 66
           ++ F +   + E  +         E Q +   ND+   A+         YN S  Q Y +
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIE-QRDRLYNDNQVFAK---------YNVSRLQPYLK 139

Query: 67  SID-LYSSVPSPSLTFLGTPSL--SRLSSSFLSS--------------SLTRRHTPESLA 109
               L    P+ ++   G      + ++     S              +L   ++PE++ 
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 110 ATTKPLLPTVAYEQPQQQRRSSHTLLPPFPSRRSSLIKDSKSSRVSHEHPISRQSSYAQA 169
              + LL  +    P    RS H+        R   I+            + +   Y   
Sbjct: 200 EMLQKLLYQI---DPNWTSRSDHSSNIK---LRIHSIQAELRR-------LLKSKPYENC 246

Query: 170 LL-----------NGMNVLCGVGILSTPYAA---KEGGWFGLLILVAFGVLSFYTG---I 212
           LL           N  N+ C + +L+T +              I +    ++        
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 213 LLRRCLDSEPG------LETYPDIGQAAFGTAGRIAVSVILYAEL---YACCIEYII-LE 262
           LL + LD  P       L T P              +S+I  AE         +    + 
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNP------------RRLSII--AESIRDGLATWDNWKHVN 351

Query: 263 SDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASILV 322
            D L+++      S     L       +   L+V P          ++I           
Sbjct: 352 CDKLTTII---ESSLN--VLEPAEYRKMFDRLSVFP----PS----AHIPTI-------- 390

Query: 323 VLCLFWV-----------------GLVDQ------VNIHS-----KGTPLNLATL----- 349
           +L L W                   LV++      ++I S     K    N   L     
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 350 ---------------PVAIGLYGYCYSGH-----------AVFPNIY 370
                          P  +  Y Y + GH            +F  ++
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query554
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.85
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.77
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 99.67
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.95
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 98.38
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 98.0
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 97.72
4ain_A539 Glycine betaine transporter BETP; membrane protein 85.88
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.85  E-value=2.3e-18  Score=182.46  Aligned_cols=241  Identities=10%  Similarity=0.109  Sum_probs=174.0

Q ss_pred             CCCCCHHHHHHHHHHhhhhhhhchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHHhchhhH
Q 008754          161 SRQSSYAQALLNGMNVLCGVGILSTPYAAKEGGWFGLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAAFGTAGR  240 (554)
Q Consensus       161 ~~~~s~~~a~~~li~~iiG~GiLslP~a~~~~G~~g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~~G~~g~  240 (554)
                      +|+.+.++.++..++.++|+|++.+|..+.++|..+++..++.+++.......+.+...+.|....+.+..++.+||+.+
T Consensus         7 ~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~g   86 (445)
T 3l1l_A            7 AHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLG   86 (445)
T ss_dssp             CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHHHH
T ss_pred             CCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCChHH
Confidence            78999999999999999999999999888888876777777788888888888888877777766788889999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhhhhhhccccccCCCccccchhHHHHHHHHHHHhhhccccCCchhhHhHHHHHHHHH
Q 008754          241 IAVSVILYAELYACCIEYIILESDNLSSLFPNAHLSFGGFYLNSHHLFALMTTLAVLPTCWLRDLTVLSYISAGGVIASI  320 (554)
Q Consensus       241 ~~~~i~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~iv~~li~~pl~~~~~l~~l~~~s~~~~~~~i  320 (554)
                      ++..+.+++........+....++++..+++....+   +   ....+.++..+++..+. .+..+...+++.+..+..+
T Consensus        87 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~in-~~g~~~~~~~~~~~~~~~i  159 (445)
T 3l1l_A           87 YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDP---W---VLTITCVVVLWIFVLLN-IVGPKMITRVQAVATVLAL  159 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSH---H---HHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccccc---H---HHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHH
Confidence            999999988877777788888888888777643210   0   01222222222333333 3467777777665555444


Q ss_pred             HHHHHHHhhhccc-cc-ccCCC--C-CccccCchhHHHHHHHHhhccccchhhHHhhccCCCC-chhHHHHHHHHHHHHH
Q 008754          321 LVVLCLFWVGLVD-QV-NIHSK--G-TPLNLATLPVAIGLYGYCYSGHAVFPNIYTSMAQPNQ-FPKVLITCFLICTAMY  394 (554)
Q Consensus       321 ~~~~~~~~~~~~~-~~-~~~~~--~-~~~~~~~~~~a~~~~~faf~g~~~i~~i~~emk~p~~-~~~~~~~s~~~~~~lY  394 (554)
                      +.++.++..+... +. .+...  + ...++.++..++....|+|.|++.+..+.+|+|||+| .+|++..+..+++++|
T Consensus       160 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y  239 (445)
T 3l1l_A          160 IPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCY  239 (445)
T ss_dssp             HHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHH
Confidence            4443333333221 11 11111  1 1123567888999999999999999999999999976 9999999999999999


Q ss_pred             HHHHHHHHHHhcCC
Q 008754          395 AGVAYMGYTMFGES  408 (554)
Q Consensus       395 ~~vg~~gy~~fG~~  408 (554)
                      +++.+......+.+
T Consensus       240 ~~~~~~~~~~~~~~  253 (445)
T 3l1l_A          240 VLSTTAIMGMIPNA  253 (445)
T ss_dssp             HHHHHHHHHHSCTT
T ss_pred             HHHHHHHHhcCCHH
Confidence            99998887777644
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query554
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 97.94
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.94  E-value=0.016  Score=59.18  Aligned_cols=106  Identities=19%  Similarity=0.179  Sum_probs=69.4

Q ss_pred             CCCCCHHHHHHHHHHhhhhhh-hchhHHHH-HhhcHH----HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHH
Q 008754          161 SRQSSYAQALLNGMNVLCGVG-ILSTPYAA-KEGGWF----GLLILVAFGVLSFYTGILLRRCLDSEPGLETYPDIGQAA  234 (554)
Q Consensus       161 ~~~~s~~~a~~~li~~iiG~G-iLslP~a~-~~~G~~----g~ill~~~~~ls~~t~~~L~~~~~~~~~~~~y~~l~~~~  234 (554)
                      ++-.|..+-++..++..+|.| +.-.||-. +++|..    -+++++++|+-..+.-..+++.. +++....+..+....
T Consensus         2 ~~W~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~-~~g~i~~~~~i~~~~   80 (509)
T d2a65a1           2 EHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYG-GAQGHGTTPAIFYLL   80 (509)
T ss_dssp             CCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHH-HTTTCCSHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCcccHHHHHHHHh
Confidence            445688999999999999999 88899876 566743    34444555555556666677765 667778888888877


Q ss_pred             hchhhHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 008754          235 FGTAGRIAVSVILYAELYACCIEYIILESDNLS  267 (554)
Q Consensus       235 ~G~~g~~~~~i~~~~~~~g~~~~y~i~~~~~l~  267 (554)
                      .+.+....+.+..++..+..++-|.+..+-.+.
T Consensus        81 ~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~  113 (509)
T d2a65a1          81 WRNRFAKILGVFGLWIPLVVAIYYVYIESWTLG  113 (509)
T ss_dssp             SCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcchhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            654433334444444444445555555555443