Citrus Sinensis ID: 008771
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 554 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LV93 | 692 | ABC transporter F family | yes | no | 0.980 | 0.784 | 0.780 | 0.0 | |
| Q9FIB4 | 678 | ABC transporter F family | no | no | 0.965 | 0.789 | 0.754 | 0.0 | |
| O05519 | 642 | Uncharacterized ABC trans | yes | no | 0.797 | 0.688 | 0.358 | 5e-70 | |
| O34512 | 518 | Uncharacterized ABC trans | no | no | 0.801 | 0.857 | 0.323 | 1e-57 | |
| P0A9U3 | 530 | Uncharacterized ABC trans | N/A | no | 0.794 | 0.830 | 0.315 | 2e-56 | |
| P0A9U4 | 530 | Uncharacterized ABC trans | yes | no | 0.794 | 0.830 | 0.315 | 2e-56 | |
| P0A9U5 | 530 | Uncharacterized ABC trans | N/A | no | 0.794 | 0.830 | 0.315 | 2e-56 | |
| P0A9W5 | 555 | Uncharacterized ABC trans | no | no | 0.768 | 0.767 | 0.323 | 3e-54 | |
| P0A9W3 | 555 | Uncharacterized ABC trans | N/A | no | 0.768 | 0.767 | 0.323 | 3e-54 | |
| P0A9W4 | 555 | Uncharacterized ABC trans | N/A | no | 0.768 | 0.767 | 0.323 | 3e-54 |
| >sp|Q9LV93|AB5F_ARATH ABC transporter F family member 5 OS=Arabidopsis thaliana GN=ABCF5 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/547 (78%), Positives = 480/547 (87%), Gaps = 4/547 (0%)
Query: 9 NLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVES 68
+LRS+FF+ L R +P S +S++ ++ I QVS ++E S+ + Q ++ES
Sbjct: 11 DLRSTFFTGL--RTSPIPSNFIKISSISNPRRDISTIRAQVSTISLET-SVKQRQDEIES 67
Query: 69 LFSSSADEFE-NKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVG 127
LFS + + ++K + K S GAS ISSGVKLENI KSYKGVTVLKDVTWEVK+GEKVG
Sbjct: 68 LFSKQPSQQDSDRKRNGKSSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEKVG 127
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187
LVGVNGAGKTTQLRII GQEEPDSGNVIKAK NMK+AFLSQEFEVSMS+TVREEFM+AFK
Sbjct: 128 LVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKVAFLSQEFEVSMSKTVREEFMTAFK 187
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
EEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPELG
Sbjct: 188 EEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPELG 247
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV 307
F +D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL KQDV
Sbjct: 248 FAPEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQDV 307
Query: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367
PMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ++I+
Sbjct: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKDID 367
Query: 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI 427
TKDLI RLGAGANSGRAS+AEKKLE+LQE+E IEKPFQRKQMKIRFPERG SGRSVV +
Sbjct: 368 STKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVVNV 427
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
KN++FG+ED++LF +ANL+IERGEK AI+GPNGCGKSTLLKLIMGLEKP GEV+LGEHN
Sbjct: 428 KNIDFGFEDKMLFKKANLSIERGEKIAILGPNGCGKSTLLKLIMGLEKPVKGEVILGEHN 487
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
VLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLSGG
Sbjct: 488 VLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLSGG 547
Query: 548 EKIILLY 554
EK L +
Sbjct: 548 EKARLAF 554
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIB4|AB2F_ARATH ABC transporter F family member 2 OS=Arabidopsis thaliana GN=ABCF2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 820 bits (2118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/559 (75%), Positives = 472/559 (84%), Gaps = 24/559 (4%)
Query: 1 MDVTTT--TTNLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQR---PRITCQVSAATVE 55
M +TT + NLRS+FF T FT L+ R P I VSAA+
Sbjct: 1 MVLTTNLYSLNLRSTFFFT-----NTITCPTLFTFKLSSVSNPRRVFPNIRAHVSAAS-- 53
Query: 56 KKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKD 115
+ S++ESL S+ ++K +KQSN GASSISSGV+LENISKSY+G+TVLKD
Sbjct: 54 ------SNSELESLLST------DRKLISKQSNNGASSISSGVRLENISKSYEGITVLKD 101
Query: 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175
VTWEVKKGEKVGL+GVNGAGKTTQLRII GQEEPDSGNVI AK N+K+AFLSQEFEVSM
Sbjct: 102 VTWEVKKGEKVGLIGVNGAGKTTQLRIITGQEEPDSGNVIWAKPNLKVAFLSQEFEVSMG 161
Query: 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235
+TV+EEFM FKEEMEIA KLE +QKA+E AVDD++LMG+LLDEFDLLQR+AQ V+LD++
Sbjct: 162 KTVKEEFMCTFKEEMEIARKLENLQKAIEEAVDDLELMGKLLDEFDLLQRRAQEVDLDSI 221
Query: 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI 295
AK+SKLM ELGF ++D DRLVASFSSGWQMRMSLGKILLQ+PDLLLLDEPTNHLDLDTI
Sbjct: 222 HAKISKLMSELGFVSEDADRLVASFSSGWQMRMSLGKILLQNPDLLLLDEPTNHLDLDTI 281
Query: 296 EWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQ 355
EWLEGYL KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT++GNYSQYV+ KA +E+Q
Sbjct: 282 EWLEGYLIKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTFDGNYSQYVISKAELVEAQ 341
Query: 356 YAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415
YAAWEKQQ+EIE TKDLI+RL AGANSGRASSAEKKLE+LQEEE IEKPFQRKQMKIRFP
Sbjct: 342 YAAWEKQQKEIEATKDLISRLSAGANSGRASSAEKKLEKLQEEELIEKPFQRKQMKIRFP 401
Query: 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475
E G SGRSVVT+KNL FG++D++LFN+ANL IERGEK AIIGPNGCGKSTLLKLIMGLEK
Sbjct: 402 ECGLSGRSVVTVKNLVFGFDDKMLFNKANLAIERGEKVAIIGPNGCGKSTLLKLIMGLEK 461
Query: 476 PRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD 535
P GEV+LGEHNVLPNYFEQNQAEA DLDKTV+ETV EAA DWRIDDIK LLGRCNFKAD
Sbjct: 462 PMRGEVILGEHNVLPNYFEQNQAEAQDLDKTVIETVVEAAVDWRIDDIKALLGRCNFKAD 521
Query: 536 MLDRKVSLLSGGEKIILLY 554
MLDRKVSLLSGGEK L +
Sbjct: 522 MLDRKVSLLSGGEKARLAF 540
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O05519|YDIF_BACSU Uncharacterized ABC transporter ATP-binding protein YdiF OS=Bacillus subtilis (strain 168) GN=ydiF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 266 bits (679), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 164/457 (35%), Positives = 257/457 (56%), Gaps = 15/457 (3%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ +SKS+ T+L ++ EV+ +++ +VG NGAGK+T L+IIAGQ + G +IK
Sbjct: 4 LQVNQLSKSFGADTILNNIKLEVRNRDRIAIVGRNGAGKSTLLKIIAGQLSYEKGEIIKP 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES--AVDDMDLMGR 215
K ++ + +L+Q + T++EE ++ F +E+ +A+E A D +
Sbjct: 64 K-DITMGYLAQHTGLDSKLTIKEELLTVFDH----LKAMEKEMRAMEEKMAAADPGELES 118
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
++ +D LQ++ + +A V ++ LGF+ D V S S G + R++LGK+LL
Sbjct: 119 IMKTYDRLQQEFKDKGGYQYEADVRSVLHGLGFSHFDDSTQVQSLSGGQKTRLALGKLLL 178
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
PDLL+LDEPTNHLD+DT+ WLE YL ++I+SHDR FLD++ ++ E S+
Sbjct: 179 TQPDLLILDEPTNHLDIDTLTWLEHYLQGYSGAILIVSHDRYFLDKVVNQVYEVSRAESK 238
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINR-LGAGANSGRASSAEKKLER 394
Y GNYS Y+ +KAA E +EKQQ EI + +D ++R L + + RA S K+LER
Sbjct: 239 KYHGNYSAYLDQKAAQYEKDLKMYEKQQDEIAKLQDFVDRNLARASTTKRAQSRRKQLER 298
Query: 395 LQEEEQIEKPF-QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDR-LLFNRANLTIERGEK 452
+ + + KP K F +SG V+ +++L YE++ L + + RGE
Sbjct: 299 M---DVMSKPLGDEKSANFHFDITKQSGNEVLRVQDLTISYENQPPLLTEVSFMLTRGES 355
Query: 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVA 512
A++GPNG GKSTLLK ++ KP G + G NV Y++Q QAE L K VL+ +
Sbjct: 356 AALVGPNGIGKSTLLKTLIDTLKPDQGTISYGS-NVSVGYYDQEQAE-LTSSKRVLDELW 413
Query: 513 EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+ +I+ LG F D + + V LSGGEK
Sbjct: 414 DEYPGLPEKEIRTCLGNFLFSGDDVLKPVHSLSGGEK 450
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|O34512|YFMM_BACSU Uncharacterized ABC transporter ATP-binding protein YfmM OS=Bacillus subtilis (strain 168) GN=yfmM PE=3 SV=2 | Back alignment and function description |
|---|
Score = 224 bits (572), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 147/455 (32%), Positives = 246/455 (54%), Gaps = 11/455 (2%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
S + ++++S + + +V++ + KGE VGL+G NG GK+T + II G+ EPD G V
Sbjct: 2 SILSVKDLSHGFGDRAIFNNVSFRLLKGEHVGLIGANGEGKSTFMNIITGKLEPDEGKVE 61
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+K N+++ +L Q + +++R+ AF + ++ + + A D D + +
Sbjct: 62 WSK-NVRVGYLDQHTVLEKGKSIRDVLKDAFHYLFAMEEEMNEIYNKMGEA--DPDELEK 118
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
LL+E ++Q + +D+KV ++ LG + +R V S G + ++ L K+LL
Sbjct: 119 LLEEVGVIQDALTNNDFYVIDSKVEEIARGLGLSDIGLERDVTDLSGGQRTKVLLAKLLL 178
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
+ P++LLLDEPTN+LD IEWL+ YL + + ++ISHD FL+ + I E
Sbjct: 179 EKPEILLLDEPTNYLDEQHIEWLKRYLQEYENAFILISHDIPFLNSVINLIYHVENQELT 238
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS-GRASSAEKKLER 394
Y G+Y Q++ + AA++KQQ+E+ + KD + R A ++ A S +KKL++
Sbjct: 239 RYVGDYHQFMEVYEVKKQQLEAAYKKQQQEVAELKDFVARNKARVSTRNMAMSRQKKLDK 298
Query: 395 LQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTA 454
+ + IE ++ + + F SG+ + K+L GY D L NL +ERG+K A
Sbjct: 299 M---DMIELAAEKPKPEFHFKPARTSGKLIFETKDLVIGY-DSPLSRPLNLRMERGQKIA 354
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514
+ G NG GK+TLLK ++G +P G V GEH + YFEQ E + T +E V
Sbjct: 355 LYGANGIGKTTLLKSLLGEIQPLEGSVERGEH-IYTGYFEQEVKET--NNNTCIEEVWSE 411
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+ +I+ L +C ++ +VS+LSGGEK
Sbjct: 412 FPSYTQYEIRAALAKCGLTTKHIESRVSVLSGGEK 446
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|P0A9U3|YBIT_ECOLI Uncharacterized ABC transporter ATP-binding protein YbiT OS=Escherichia coli (strain K12) GN=ybiT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 144/457 (31%), Positives = 250/457 (54%), Gaps = 17/457 (3%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
N++ + + ++++ + G + GL+G NG+GK+T ++I+ G EP GNV N
Sbjct: 6 NVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNV-SLDPNE 64
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+I L Q+ TV + + KE E+ + +R+ E + +D G + +
Sbjct: 65 RIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPEMSEED----GYKVAD-- 118
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
L+ K ++ + +A+ +L+ +G + ++ + GW++R+ L + L DPD+L
Sbjct: 119 -LEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDIL 177
Query: 282 LLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341
LLDEPTN+LD+DTI WLE L ++D M+IISHDR FL+ +CT + + + G R Y GNY
Sbjct: 178 LLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNY 237
Query: 342 SQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQEEEQ 400
+Y+ E A K++ +I + + ++R A A+ R A+S +++++++ EE
Sbjct: 238 DEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEV 297
Query: 401 IEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNG 460
K R+ IRF + + R+ + ++ L G+++ LF NL +E GEK A++G NG
Sbjct: 298 --KASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNG 355
Query: 461 CGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520
GKSTLLK ++G +P G V E N Y+ Q+ + D TV E +++ ++
Sbjct: 356 VGKSTLLKTLVGDLQPDSGTVKWSE-NARIGYYAQDHEYEFENDLTVFEWMSQWKQEG-- 412
Query: 521 DD---IKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554
DD ++ +LGR F D + + +LSGGEK +L+
Sbjct: 413 DDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLF 449
|
Escherichia coli (strain K12) (taxid: 83333) |
| >sp|P0A9U4|YBIT_ECOL6 Uncharacterized ABC transporter ATP-binding protein YbiT OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ybiT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 144/457 (31%), Positives = 250/457 (54%), Gaps = 17/457 (3%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
N++ + + ++++ + G + GL+G NG+GK+T ++I+ G EP GNV N
Sbjct: 6 NVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNV-SLDPNE 64
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+I L Q+ TV + + KE E+ + +R+ E + +D G + +
Sbjct: 65 RIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPEMSEED----GYKVAD-- 118
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
L+ K ++ + +A+ +L+ +G + ++ + GW++R+ L + L DPD+L
Sbjct: 119 -LEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDIL 177
Query: 282 LLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341
LLDEPTN+LD+DTI WLE L ++D M+IISHDR FL+ +CT + + + G R Y GNY
Sbjct: 178 LLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNY 237
Query: 342 SQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQEEEQ 400
+Y+ E A K++ +I + + ++R A A+ R A+S +++++++ EE
Sbjct: 238 DEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEV 297
Query: 401 IEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNG 460
K R+ IRF + + R+ + ++ L G+++ LF NL +E GEK A++G NG
Sbjct: 298 --KASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNG 355
Query: 461 CGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520
GKSTLLK ++G +P G V E N Y+ Q+ + D TV E +++ ++
Sbjct: 356 VGKSTLLKTLVGDLQPDSGTVKWSE-NARIGYYAQDHEYEFENDLTVFEWMSQWKQEG-- 412
Query: 521 DD---IKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554
DD ++ +LGR F D + + +LSGGEK +L+
Sbjct: 413 DDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLF 449
|
Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) |
| >sp|P0A9U5|YBIT_ECO57 Uncharacterized ABC transporter ATP-binding protein YbiT OS=Escherichia coli O157:H7 GN=ybiT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 144/457 (31%), Positives = 250/457 (54%), Gaps = 17/457 (3%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
N++ + + ++++ + G + GL+G NG+GK+T ++I+ G EP GNV N
Sbjct: 6 NVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNV-SLDPNE 64
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+I L Q+ TV + + KE E+ + +R+ E + +D G + +
Sbjct: 65 RIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPEMSEED----GYKVAD-- 118
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
L+ K ++ + +A+ +L+ +G + ++ + GW++R+ L + L DPD+L
Sbjct: 119 -LEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDIL 177
Query: 282 LLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341
LLDEPTN+LD+DTI WLE L ++D M+IISHDR FL+ +CT + + + G R Y GNY
Sbjct: 178 LLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNY 237
Query: 342 SQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQEEEQ 400
+Y+ E A K++ +I + + ++R A A+ R A+S +++++++ EE
Sbjct: 238 DEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEV 297
Query: 401 IEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNG 460
K R+ IRF + + R+ + ++ L G+++ LF NL +E GEK A++G NG
Sbjct: 298 --KASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNG 355
Query: 461 CGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520
GKSTLLK ++G +P G V E N Y+ Q+ + D TV E +++ ++
Sbjct: 356 VGKSTLLKTLVGDLQPDSGTVKWSE-NARIGYYAQDHEYEFENDLTVFEWMSQWKQEG-- 412
Query: 521 DD---IKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554
DD ++ +LGR F D + + +LSGGEK +L+
Sbjct: 413 DDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLF 449
|
Escherichia coli O157:H7 (taxid: 83334) |
| >sp|P0A9W5|YJJK_SHIFL Uncharacterized ABC transporter ATP-binding protein YjjK OS=Shigella flexneri GN=yjjK PE=3 SV=2 | Back alignment and function description |
|---|
Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 143/442 (32%), Positives = 236/442 (53%), Gaps = 16/442 (3%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171
+LK+++ G K+G++G+NGAGK+T LRI+AG ++ G + + ++KI +L QE +
Sbjct: 21 ILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEA-RPQPDIKIGYLPQEPQ 79
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
++ TVRE A E + +L+ V D D +L E L+ QA +
Sbjct: 80 LNPEHTVRESIEEAVSEVVNALKRLDEVYALYADPDADFD---KLAAEQGRLEEIIQAHD 136
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
L+ ++ + L D D +A+ S G + R++L ++LL+ PD+LLLDEPTNHLD
Sbjct: 137 GHNLNVQLERAADALRLP--DWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 194
Query: 292 LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAW 351
+++ WLE +L + +V I+HDR FLD + I+E + G +EGNYS ++ +K
Sbjct: 195 AESVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQR 254
Query: 352 IESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMK 411
+ + + +++ IE+ + + + GR S + +L R +E E + + +
Sbjct: 255 LAQEASQEAARRKSIEKELEWVRQ----GTKGRQSKGKARLARFEELNSTEYQKRNETNE 310
Query: 412 IRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471
+ P R G V+ + NL Y DRLL + + +I +G IIGPNG GKSTL ++I
Sbjct: 311 LFIPPGPRLGDKVLEVSNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMIS 370
Query: 472 GLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI----KGLL 527
G E+P G + LGE L + +++D KTV E V+ + +I + + +
Sbjct: 371 GQEQPDSGTITLGETVKLASV--DQFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYV 428
Query: 528 GRCNFKADMLDRKVSLLSGGEK 549
GR NFK ++V LSGGE+
Sbjct: 429 GRFNFKGVDQGKRVGELSGGER 450
|
Shigella flexneri (taxid: 623) |
| >sp|P0A9W3|YJJK_ECOLI Uncharacterized ABC transporter ATP-binding protein YjjK OS=Escherichia coli (strain K12) GN=yjjK PE=1 SV=2 | Back alignment and function description |
|---|
Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 143/442 (32%), Positives = 236/442 (53%), Gaps = 16/442 (3%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171
+LK+++ G K+G++G+NGAGK+T LRI+AG ++ G + + ++KI +L QE +
Sbjct: 21 ILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEA-RPQPDIKIGYLPQEPQ 79
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
++ TVRE A E + +L+ V D D +L E L+ QA +
Sbjct: 80 LNPEHTVRESIEEAVSEVVNALKRLDEVYALYADPDADFD---KLAAEQGRLEEIIQAHD 136
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
L+ ++ + L D D +A+ S G + R++L ++LL+ PD+LLLDEPTNHLD
Sbjct: 137 GHNLNVQLERAADALRLP--DWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 194
Query: 292 LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAW 351
+++ WLE +L + +V I+HDR FLD + I+E + G +EGNYS ++ +K
Sbjct: 195 AESVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQR 254
Query: 352 IESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMK 411
+ + + +++ IE+ + + + GR S + +L R +E E + + +
Sbjct: 255 LAQEASQEAARRKSIEKELEWVRQ----GTKGRQSKGKARLARFEELNSTEYQKRNETNE 310
Query: 412 IRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471
+ P R G V+ + NL Y DRLL + + +I +G IIGPNG GKSTL ++I
Sbjct: 311 LFIPPGPRLGDKVLEVSNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMIS 370
Query: 472 GLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI----KGLL 527
G E+P G + LGE L + +++D KTV E V+ + +I + + +
Sbjct: 371 GQEQPDSGTITLGETVKLASV--DQFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYV 428
Query: 528 GRCNFKADMLDRKVSLLSGGEK 549
GR NFK ++V LSGGE+
Sbjct: 429 GRFNFKGVDQGKRVGELSGGER 450
|
Escherichia coli (strain K12) (taxid: 83333) |
| >sp|P0A9W4|YJJK_ECO57 Uncharacterized ABC transporter ATP-binding protein YjjK OS=Escherichia coli O157:H7 GN=yjjK PE=3 SV=2 | Back alignment and function description |
|---|
Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 143/442 (32%), Positives = 236/442 (53%), Gaps = 16/442 (3%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171
+LK+++ G K+G++G+NGAGK+T LRI+AG ++ G + + ++KI +L QE +
Sbjct: 21 ILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEA-RPQPDIKIGYLPQEPQ 79
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
++ TVRE A E + +L+ V D D +L E L+ QA +
Sbjct: 80 LNPEHTVRESIEEAVSEVVNALKRLDEVYALYADPDADFD---KLAAEQGRLEEIIQAHD 136
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
L+ ++ + L D D +A+ S G + R++L ++LL+ PD+LLLDEPTNHLD
Sbjct: 137 GHNLNVQLERAADALRLP--DWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 194
Query: 292 LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAW 351
+++ WLE +L + +V I+HDR FLD + I+E + G +EGNYS ++ +K
Sbjct: 195 AESVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQR 254
Query: 352 IESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMK 411
+ + + +++ IE+ + + + GR S + +L R +E E + + +
Sbjct: 255 LAQEASQEAARRKSIEKELEWVRQ----GTKGRQSKGKARLARFEELNSTEYQKRNETNE 310
Query: 412 IRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471
+ P R G V+ + NL Y DRLL + + +I +G IIGPNG GKSTL ++I
Sbjct: 311 LFIPPGPRLGDKVLEVSNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMIS 370
Query: 472 GLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI----KGLL 527
G E+P G + LGE L + +++D KTV E V+ + +I + + +
Sbjct: 371 GQEQPDSGTITLGETVKLASV--DQFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYV 428
Query: 528 GRCNFKADMLDRKVSLLSGGEK 549
GR NFK ++V LSGGE+
Sbjct: 429 GRFNFKGVDQGKRVGELSGGER 450
|
Escherichia coli O157:H7 (taxid: 83334) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 554 | ||||||
| 255576683 | 640 | abc transporter, putative [Ricinus commu | 0.996 | 0.862 | 0.795 | 0.0 | |
| 224081252 | 722 | ABC transporter family protein [Populus | 0.987 | 0.757 | 0.769 | 0.0 | |
| 297797507 | 694 | ATGCN5 [Arabidopsis lyrata subsp. lyrata | 0.987 | 0.788 | 0.786 | 0.0 | |
| 224093878 | 635 | ABC transporter family protein [Populus | 0.785 | 0.685 | 0.845 | 0.0 | |
| 15912315 | 692 | AT5g64840/MXK3_6 [Arabidopsis thaliana] | 0.980 | 0.784 | 0.780 | 0.0 | |
| 15238261 | 692 | ABC transporter F family member 5 [Arabi | 0.980 | 0.784 | 0.780 | 0.0 | |
| 449448414 | 714 | PREDICTED: ABC transporter F family memb | 0.996 | 0.773 | 0.756 | 0.0 | |
| 356509032 | 696 | PREDICTED: ABC transporter F family memb | 0.963 | 0.767 | 0.776 | 0.0 | |
| 297811095 | 678 | hypothetical protein ARALYDRAFT_487818 [ | 0.965 | 0.789 | 0.762 | 0.0 | |
| 217426790 | 696 | AT5G09930-like protein [Arabidopsis aren | 0.965 | 0.768 | 0.767 | 0.0 |
| >gi|255576683|ref|XP_002529230.1| abc transporter, putative [Ricinus communis] gi|223531303|gb|EEF33143.1| abc transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 873 bits (2256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/566 (79%), Positives = 497/566 (87%), Gaps = 14/566 (2%)
Query: 1 MDVTT--TTTNLRSSFFSTLQPRFTPFASAKSFTN-----SLNFTKKQRP--RITCQVSA 51
MD++T +L SS F T P PF S S+ F RP RIT ++S
Sbjct: 1 MDLSTKFHRLDLHSSSFLTGSPLRPPFKQNSSLPIITKPISVKFPS-TRPTSRITARLST 59
Query: 52 ATVEKKSIAKAQSD---VESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK 108
ATVE S+A A +D +ESLFSSS+ +K+ S KQSNTGAS I+SG+KLENISKSYK
Sbjct: 60 ATVET-SVADADTDTTDIESLFSSSSGNDFDKRASRKQSNTGASGITSGIKLENISKSYK 118
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRII GQEE DSGNVIKAK NMK+AFLSQ
Sbjct: 119 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIITGQEEADSGNVIKAKPNMKVAFLSQ 178
Query: 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228
EFEVS+SRTV+EEFMSAF+EEMEIAG+LE+VQKA+E++V+D++LMGRLLDEFDLLQR+AQ
Sbjct: 179 EFEVSLSRTVKEEFMSAFEEEMEIAGRLEKVQKAIENSVEDLELMGRLLDEFDLLQRRAQ 238
Query: 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTN 288
AV+LD +DAK+SKLMPELGF +D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTN
Sbjct: 239 AVDLDEVDAKISKLMPELGFAPEDSDRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTN 298
Query: 289 HLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEK 348
HLDLDTIEWLEGYL KQ+VPMVIISHDRAFLDQLCTKIVETEMGV+RTY+GNYSQY++ K
Sbjct: 299 HLDLDTIEWLEGYLQKQEVPMVIISHDRAFLDQLCTKIVETEMGVARTYDGNYSQYLVSK 358
Query: 349 AAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRK 408
AAWIESQYAAWEKQQ+EIEQTKDLI+RLGAGANSGRASSAEKKLERLQEE+QIEKPFQRK
Sbjct: 359 AAWIESQYAAWEKQQKEIEQTKDLISRLGAGANSGRASSAEKKLERLQEEDQIEKPFQRK 418
Query: 409 QMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
QMKIRFPERGRSGR+VV IKNLEF YED++LFN+ NLTIERGEK AIIGPNGCGKSTLLK
Sbjct: 419 QMKIRFPERGRSGRNVVMIKNLEFSYEDQVLFNKTNLTIERGEKIAIIGPNGCGKSTLLK 478
Query: 469 LIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLG 528
LIMGLEKP GE++LGEHNVLPNYFEQNQAEALDLDKTVL+TV E AEDWRIDDIKGLLG
Sbjct: 479 LIMGLEKPNAGEIVLGEHNVLPNYFEQNQAEALDLDKTVLQTVEEVAEDWRIDDIKGLLG 538
Query: 529 RCNFKADMLDRKVSLLSGGEKIILLY 554
RCNFKADMLDRKVSLLSGGEK L +
Sbjct: 539 RCNFKADMLDRKVSLLSGGEKARLAF 564
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224081252|ref|XP_002306353.1| ABC transporter family protein [Populus trichocarpa] gi|222855802|gb|EEE93349.1| ABC transporter family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/563 (76%), Positives = 492/563 (87%), Gaps = 16/563 (2%)
Query: 7 TTNLRSSFF------------STLQPRFTPFASAKSF--TNSLNF-TKKQRPRITCQVSA 51
+T S+FF S L+P + ++ + TNS NF T++ +I ++S
Sbjct: 4 STKFHSTFFTGATLFNPQQKTSLLKPNPSLLSTKFTINNTNSFNFPTRRPNSKIKARLST 63
Query: 52 ATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVT 111
ATVE S+A+ ++D ESLFSS++D +K KQSN GAS ISSG+KLENISKSYKGVT
Sbjct: 64 ATVET-SVAEPETDTESLFSSNSDVDFDKNRLRKQSNRGASGISSGIKLENISKSYKGVT 122
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171
VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRI+ G EEPDSGNVIKAK+NMKIAFLSQEFE
Sbjct: 123 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIMTGLEEPDSGNVIKAKANMKIAFLSQEFE 182
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
VSMSRTV+EEFMSAFKEEMEIA +LE+VQKA+E +V+D++LMGRLLDEFDLLQR+AQAV+
Sbjct: 183 VSMSRTVKEEFMSAFKEEMEIAKRLEKVQKAIEGSVEDLELMGRLLDEFDLLQRRAQAVD 242
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
LD +DAK+SKLMP+LGF+ +D DRLVA+FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD
Sbjct: 243 LDEVDAKISKLMPQLGFSPEDSDRLVAAFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 302
Query: 292 LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAW 351
LDTIEWLEGYL KQDVPMVIISHDRAFLDQLCTKIVET+MGVSRT+EGNYSQY++ KA W
Sbjct: 303 LDTIEWLEGYLQKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYIISKAEW 362
Query: 352 IESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMK 411
+E+Q AAWEK QREIE T+DLI+RLG+GANSGRASSAEKKLERLQEE+QIEKPFQRKQMK
Sbjct: 363 VEAQLAAWEKHQREIEHTRDLISRLGSGANSGRASSAEKKLERLQEEDQIEKPFQRKQMK 422
Query: 412 IRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471
IRFPERGRSGRSVV I+NLEFGYED++LFN+ NL IERGEK AI+GPNGCGKSTLLKLIM
Sbjct: 423 IRFPERGRSGRSVVAIRNLEFGYEDKVLFNKTNLMIERGEKIAILGPNGCGKSTLLKLIM 482
Query: 472 GLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN 531
G+EKP GE++LGEHNVLPNYFEQNQAEALDLDKTVL+TV E AEDWR+DDIKGLLGRCN
Sbjct: 483 GVEKPSRGEIVLGEHNVLPNYFEQNQAEALDLDKTVLQTVEEVAEDWRLDDIKGLLGRCN 542
Query: 532 FKADMLDRKVSLLSGGEKIILLY 554
FK DMLDRKVSLLSGGEK L +
Sbjct: 543 FKVDMLDRKVSLLSGGEKARLAF 565
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797507|ref|XP_002866638.1| ATGCN5 [Arabidopsis lyrata subsp. lyrata] gi|297312473|gb|EFH42897.1| ATGCN5 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/549 (78%), Positives = 481/549 (87%), Gaps = 2/549 (0%)
Query: 7 TTNLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDV 66
+ +LRS+FF+ L+P +P S +S++ ++ I QVS ++E S+ + Q ++
Sbjct: 9 SLDLRSTFFTGLRPCPSPIPSNFIKISSISNPRRGISTIRAQVSTISLET-SVKERQDEI 67
Query: 67 ESLFSSSADEFENKKYSN-KQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEK 125
ESLFS E ++ + N K S GAS ISSGVKLENI KSYKGVTVLKDVTWEVK+GEK
Sbjct: 68 ESLFSKPTSEQDSDRRRNGKNSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEK 127
Query: 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185
VGLVGVNGAGKTTQLRII GQEEPDSGNVIKAK NMKIAFLSQEFEVSMS+TVREEFMSA
Sbjct: 128 VGLVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKIAFLSQEFEVSMSKTVREEFMSA 187
Query: 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245
FKEEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPE
Sbjct: 188 FKEEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPE 247
Query: 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ 305
LGF ++D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL KQ
Sbjct: 248 LGFASEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQ 307
Query: 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQRE 365
DVPMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ+E
Sbjct: 308 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKE 367
Query: 366 IEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVV 425
I+ TKDLI RLGAGANSGRAS+AEKKLE+LQE+E IEKPFQRKQMKIRFPERG SGRSVV
Sbjct: 368 IDSTKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVV 427
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+KN++FG+ED++LF +ANL IERGEK AIIGPNGCGKSTLLKLIMGLEKP GEV+LGE
Sbjct: 428 NVKNIDFGFEDKMLFKKANLAIERGEKIAIIGPNGCGKSTLLKLIMGLEKPMKGEVILGE 487
Query: 486 HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLS 545
HNVLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLS
Sbjct: 488 HNVLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLS 547
Query: 546 GGEKIILLY 554
GGEK L +
Sbjct: 548 GGEKARLAF 556
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224093878|ref|XP_002310031.1| ABC transporter family protein [Populus trichocarpa] gi|222852934|gb|EEE90481.1| ABC transporter family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/497 (84%), Positives = 465/497 (93%)
Query: 58 SIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVT 117
S A +++D+ESLFSS++D ++K SNKQSN GAS ISSG+KLENISKSYKGVTVLKDVT
Sbjct: 1 SGADSKTDIESLFSSNSDVEFDRKRSNKQSNGGASGISSGIKLENISKSYKGVTVLKDVT 60
Query: 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177
WEVKKGEKVGLVGVNGAGKTTQLRII GQEEPDSGNVIKAK+NMKIAFLSQEFEVSMSRT
Sbjct: 61 WEVKKGEKVGLVGVNGAGKTTQLRIITGQEEPDSGNVIKAKANMKIAFLSQEFEVSMSRT 120
Query: 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237
V+EEFMSAFKEEMEIA +LE+VQKA+E AV+D+DLMGRLLDEFDLLQR+AQAV+LD +DA
Sbjct: 121 VKEEFMSAFKEEMEIAERLEKVQKAIEGAVEDLDLMGRLLDEFDLLQRRAQAVDLDEVDA 180
Query: 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW 297
K+SKLMPELGF+ +D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW
Sbjct: 181 KISKLMPELGFSPEDSDRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW 240
Query: 298 LEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYA 357
LEGYL KQDVPMVIISHDRAFLDQLCTKIVET+MGVSRT+EGNYSQY++ KA W+E+Q A
Sbjct: 241 LEGYLQKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYIISKAEWVEAQLA 300
Query: 358 AWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPER 417
AWEKQQ+EIE T++LI+RLGAGANSGRASSAEKKLERLQEE+QIEKPFQ KQMKIRFPER
Sbjct: 301 AWEKQQKEIEHTRELISRLGAGANSGRASSAEKKLERLQEEDQIEKPFQHKQMKIRFPER 360
Query: 418 GRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
GRSGRSVV I NLEFG+ED++LFN+ NL IERGEK AIIGPNGCGKSTLLKLIMGLEKP
Sbjct: 361 GRSGRSVVAINNLEFGFEDKVLFNKTNLMIERGEKIAIIGPNGCGKSTLLKLIMGLEKPT 420
Query: 478 GGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML 537
GG++++GEHNVLPNYFEQNQAEALDLDKTV++TV E AEDWR+DDIKGLLGRCNFKADML
Sbjct: 421 GGQIMVGEHNVLPNYFEQNQAEALDLDKTVIQTVEEVAEDWRLDDIKGLLGRCNFKADML 480
Query: 538 DRKVSLLSGGEKIILLY 554
DRKVSLLSGGEK L +
Sbjct: 481 DRKVSLLSGGEKARLAF 497
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15912315|gb|AAL08291.1| AT5g64840/MXK3_6 [Arabidopsis thaliana] gi|23308219|gb|AAN18079.1| At5g64840/MXK3_6 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 846 bits (2185), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/547 (78%), Positives = 480/547 (87%), Gaps = 4/547 (0%)
Query: 9 NLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVES 68
+LRS+FF+ L R +P S +S++ ++ I QVS ++E S+ + Q ++ES
Sbjct: 11 DLRSTFFTGL--RTSPIPSNFIKISSISNPRRDISTIRAQVSTISLET-SVKQRQDEIES 67
Query: 69 LFSSSADEFE-NKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVG 127
LFS + + ++K + K S GAS ISSGVKLENI KSYKGVTVLKDVTWEVK+GEKVG
Sbjct: 68 LFSKQPSQQDSDRKQNGKSSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEKVG 127
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187
LVGVNGAGKTTQLRII GQEEPDSGNVIKAK NMK+AFLSQEFEVSMS+TVREEFM+AFK
Sbjct: 128 LVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKVAFLSQEFEVSMSKTVREEFMTAFK 187
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
EEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPELG
Sbjct: 188 EEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPELG 247
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV 307
F +D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL KQDV
Sbjct: 248 FAPEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQDV 307
Query: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367
PMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ++I+
Sbjct: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKDID 367
Query: 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI 427
TKDLI RLGAGANSGRAS+AEKKLE+LQE+E IEKPFQRKQMKIRFPERG SGRSVV +
Sbjct: 368 STKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVVNV 427
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
KN++FG+ED++LF +ANL+IERGEK AI+GPNGCGKSTLLKLIMGLEKP GEV+LGEHN
Sbjct: 428 KNIDFGFEDKMLFKKANLSIERGEKIAILGPNGCGKSTLLKLIMGLEKPVKGEVILGEHN 487
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
VLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLSGG
Sbjct: 488 VLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLSGG 547
Query: 548 EKIILLY 554
EK L +
Sbjct: 548 EKARLAF 554
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15238261|ref|NP_201289.1| ABC transporter F family member 5 [Arabidopsis thaliana] gi|75335535|sp|Q9LV93.1|AB5F_ARATH RecName: Full=ABC transporter F family member 5; Short=ABC transporter ABCF.5; Short=AtABCF5; AltName: Full=GCN20-type ATP-binding cassette protein GCN5 gi|8843748|dbj|BAA97296.1| ABC transporter protein 1-like [Arabidopsis thaliana] gi|110742654|dbj|BAE99239.1| ABC transporter protein 1-like [Arabidopsis thaliana] gi|332010577|gb|AED97960.1| ABC transporter F family member 5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/547 (78%), Positives = 480/547 (87%), Gaps = 4/547 (0%)
Query: 9 NLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVES 68
+LRS+FF+ L R +P S +S++ ++ I QVS ++E S+ + Q ++ES
Sbjct: 11 DLRSTFFTGL--RTSPIPSNFIKISSISNPRRDISTIRAQVSTISLET-SVKQRQDEIES 67
Query: 69 LFSSSADEFE-NKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVG 127
LFS + + ++K + K S GAS ISSGVKLENI KSYKGVTVLKDVTWEVK+GEKVG
Sbjct: 68 LFSKQPSQQDSDRKRNGKSSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEKVG 127
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187
LVGVNGAGKTTQLRII GQEEPDSGNVIKAK NMK+AFLSQEFEVSMS+TVREEFM+AFK
Sbjct: 128 LVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKVAFLSQEFEVSMSKTVREEFMTAFK 187
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
EEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPELG
Sbjct: 188 EEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPELG 247
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV 307
F +D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL KQDV
Sbjct: 248 FAPEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQDV 307
Query: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367
PMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ++I+
Sbjct: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKDID 367
Query: 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI 427
TKDLI RLGAGANSGRAS+AEKKLE+LQE+E IEKPFQRKQMKIRFPERG SGRSVV +
Sbjct: 368 STKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVVNV 427
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
KN++FG+ED++LF +ANL+IERGEK AI+GPNGCGKSTLLKLIMGLEKP GEV+LGEHN
Sbjct: 428 KNIDFGFEDKMLFKKANLSIERGEKIAILGPNGCGKSTLLKLIMGLEKPVKGEVILGEHN 487
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
VLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLSGG
Sbjct: 488 VLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLSGG 547
Query: 548 EKIILLY 554
EK L +
Sbjct: 548 EKARLAF 554
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448414|ref|XP_004141961.1| PREDICTED: ABC transporter F family member 5-like [Cucumis sativus] gi|449519128|ref|XP_004166587.1| PREDICTED: ABC transporter F family member 5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 843 bits (2177), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/576 (75%), Positives = 490/576 (85%), Gaps = 24/576 (4%)
Query: 1 MDVTT--TTTNLRSSFFS---TLQPRFTPFASAKSFTN-------------SLNFTKKQR 42
MD+T +LRSSF + L R T F S++ + S+ +
Sbjct: 1 MDLTIKLHHLHLRSSFLTGSPLLDSRKTLFGSSQHHLSNRTVSQSIGGNFKSIRASSLPN 60
Query: 43 PR-ITCQVSAATVEKKSIAKAQS--DVESLFSS-SADEFENKKYSNKQSNTGASSISSGV 98
PR + ++ A VE S+A+ + D+ESL SS S EF+ K+ KQSN G S ISSGV
Sbjct: 61 PRRVNSRIEAVAVEA-SVAETSTKEDIESLLSSGSVGEFDGKRVF-KQSNAGDSRISSGV 118
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
KLEN+SKSYKG TVLK+V+WEVKKGEKVGLVGVNGAGKTTQ+RIIAG EEPDSGNV+KAK
Sbjct: 119 KLENVSKSYKGATVLKNVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDSGNVMKAK 178
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+NMKIAFLSQEFEVS+SRTVREEF+SAFKEEMEIA +LE+VQKALESAV+D+ LMGRLLD
Sbjct: 179 ANMKIAFLSQEFEVSLSRTVREEFLSAFKEEMEIATRLEKVQKALESAVEDLQLMGRLLD 238
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
EFDLLQR+AQAV+LD +D KVSKL+PELGF+ +D DRLVASFS GWQMRMSLGKILLQ+P
Sbjct: 239 EFDLLQRRAQAVDLDEVDVKVSKLLPELGFSEEDSDRLVASFSGGWQMRMSLGKILLQEP 298
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYE 338
DLLLLDEPTNHLDLDTIEWLEGYL KQDVPMVIISHDRAFLDQLCTKIVET+MGVSRTYE
Sbjct: 299 DLLLLDEPTNHLDLDTIEWLEGYLNKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTYE 358
Query: 339 GNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEE 398
GNYSQYV+ KA WIE+Q AAWEKQQ+EIEQTKDLI+RLGAGANSGRASSAEKKLERLQE
Sbjct: 359 GNYSQYVMSKAEWIEAQNAAWEKQQKEIEQTKDLISRLGAGANSGRASSAEKKLERLQEA 418
Query: 399 EQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGP 458
+ +EKPFQRKQMKIRFPERG+SGR+VV +KNLEFG+ED+ LFN+ANL IERGEK AI+GP
Sbjct: 419 DLVEKPFQRKQMKIRFPERGQSGRTVVAVKNLEFGFEDKQLFNKANLIIERGEKIAILGP 478
Query: 459 NGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW 518
NGCGKSTLLKLIMGLEKP+GGEVLLGEHNVLPNYFEQNQAEALDL+KTVLETV E AEDW
Sbjct: 479 NGCGKSTLLKLIMGLEKPKGGEVLLGEHNVLPNYFEQNQAEALDLEKTVLETVEEVAEDW 538
Query: 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554
RIDDIKGLLGRCNFK +MLDRKVSLLSGGEK L +
Sbjct: 539 RIDDIKGLLGRCNFKTEMLDRKVSLLSGGEKARLAF 574
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509032|ref|XP_003523256.1| PREDICTED: ABC transporter F family member 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/547 (77%), Positives = 473/547 (86%), Gaps = 13/547 (2%)
Query: 11 RSSFFSTLQPRFTPFASAKS---FTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVE 67
+ S L PR + + +TN F+ RP ++A+ S+ + D+E
Sbjct: 22 KPSALRHLPPRVLSRTNTNTNLIYTN--RFSGPPRP------NSASSTGLSMITVEDDIE 73
Query: 68 SLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVG 127
SLFS + E E + KQ + GAS ISSGVKLEN+ K+YKGVTVLKDV+WEVKKGEKVG
Sbjct: 74 SLFSETNSEEERR--VRKQPSIGASGISSGVKLENVGKAYKGVTVLKDVSWEVKKGEKVG 131
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187
LVGVNGAGKTTQ+RIIAG EEPD GNV+KAK+NMKIAFL+QEFEV+ SRTVREEFM+AFK
Sbjct: 132 LVGVNGAGKTTQMRIIAGLEEPDFGNVVKAKANMKIAFLNQEFEVAPSRTVREEFMNAFK 191
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
EEME+AGKLE+VQKALE AV+D++LMGRLLDEFDLLQR+AQ VNLD +DAK+SKLMPELG
Sbjct: 192 EEMEVAGKLEKVQKALEGAVNDLELMGRLLDEFDLLQRRAQNVNLDEVDAKISKLMPELG 251
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV 307
F +D DRLVASFS GWQMRM LGKILLQ+PDLLLLDEPTNHLDLDTIEWLE YL +QDV
Sbjct: 252 FAPEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEDYLNQQDV 311
Query: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367
PMVIISHDRAFLDQLCTKIVET+MGVSRT+EGNYSQYV+ KAAWIE+QYAAWEKQQ+EIE
Sbjct: 312 PMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYVISKAAWIEAQYAAWEKQQKEIE 371
Query: 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI 427
QT+DLI+RLGAGANSGRASSAEKKLERLQEEE +EKPF+RKQMKIRFPERGRSGRSVV I
Sbjct: 372 QTRDLISRLGAGANSGRASSAEKKLERLQEEELVEKPFERKQMKIRFPERGRSGRSVVAI 431
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
NLEFG+ED+ LF +ANLTIERGEK AIIGPNGCGKSTLLKLIMGLEKP GGEVLLGEHN
Sbjct: 432 NNLEFGFEDKTLFKKANLTIERGEKIAIIGPNGCGKSTLLKLIMGLEKPTGGEVLLGEHN 491
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
VLPNYFEQNQAEALDL+KTVLETV EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG
Sbjct: 492 VLPNYFEQNQAEALDLEKTVLETVEEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 551
Query: 548 EKIILLY 554
EK L +
Sbjct: 552 EKARLAF 558
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811095|ref|XP_002873431.1| hypothetical protein ARALYDRAFT_487818 [Arabidopsis lyrata subsp. lyrata] gi|297319268|gb|EFH49690.1| hypothetical protein ARALYDRAFT_487818 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 837 bits (2163), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/559 (76%), Positives = 481/559 (86%), Gaps = 24/559 (4%)
Query: 1 MDVTTT--TTNLRSSFFSTLQPRFTPFASAKSFT---NSLNFTKKQRPRITCQVSAATVE 55
M +TT + NLRS+FF T P FT +S++ +++ P I Q SA +
Sbjct: 1 MGLTTNLHSLNLRSAFFFT-----NPLPCHTLFTFKLSSVSNPRREFPNIIAQASATS-- 53
Query: 56 KKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKD 115
+ S+++SLFS+ ++K KQSN GASSISSGV+LENISKSY+GVTVLKD
Sbjct: 54 ------SNSELDSLFST------DRKLIGKQSNNGASSISSGVRLENISKSYEGVTVLKD 101
Query: 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175
VTWEVKKGEKVGL+GVNGAGKTTQLRII GQEEPDSGNVI AK N+K+AFLSQEFEVSM
Sbjct: 102 VTWEVKKGEKVGLIGVNGAGKTTQLRIITGQEEPDSGNVIWAKPNLKVAFLSQEFEVSMG 161
Query: 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235
+TV+EEFMSAFKEEME+A KLER+QKA+E AVDD++LMG+LLDEFDLLQR+AQ V+LD++
Sbjct: 162 KTVKEEFMSAFKEEMEVARKLERLQKAIEEAVDDLELMGKLLDEFDLLQRRAQEVDLDSI 221
Query: 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI 295
DAK+SKLM ELGF ++D DRLVASFSSGWQMRMSLGKILLQ+PDLLLLDEPTNHLDLDTI
Sbjct: 222 DAKISKLMSELGFVSEDADRLVASFSSGWQMRMSLGKILLQNPDLLLLDEPTNHLDLDTI 281
Query: 296 EWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQ 355
EWLEGYL KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA W+E+Q
Sbjct: 282 EWLEGYLNKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWVEAQ 341
Query: 356 YAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415
YA+WEKQQ+EIE TKDLI+RL GANSGRASSAEKKLE+LQEEEQIEKPFQRKQMKIRF
Sbjct: 342 YASWEKQQKEIEATKDLISRLSGGANSGRASSAEKKLEKLQEEEQIEKPFQRKQMKIRFL 401
Query: 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475
E G SGRSVVT+KNL FG+ED++LFN+ANL IERGEK AIIGPNGCGKSTLLKLIMGLEK
Sbjct: 402 ECGLSGRSVVTVKNLGFGFEDKILFNKANLAIERGEKVAIIGPNGCGKSTLLKLIMGLEK 461
Query: 476 PRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD 535
P GEV+LGEHNVLPNYFEQNQAEALDLDKTV+ETV EAA DWRIDDIK LLGRCNFKAD
Sbjct: 462 PMRGEVILGEHNVLPNYFEQNQAEALDLDKTVIETVVEAAVDWRIDDIKALLGRCNFKAD 521
Query: 536 MLDRKVSLLSGGEKIILLY 554
MLDR+VSLLSGGEK L +
Sbjct: 522 MLDRRVSLLSGGEKARLAF 540
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217426790|gb|ACK44498.1| AT5G09930-like protein [Arabidopsis arenosa] | Back alignment and taxonomy information |
|---|
Score = 837 bits (2161), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/559 (76%), Positives = 481/559 (86%), Gaps = 24/559 (4%)
Query: 1 MDVTTTTTNL--RSSFFSTLQPRFTPFASAKSFT---NSLNFTKKQRPRITCQVSAATVE 55
M +TT +L RS+FF T P FT +S++ K++ P I QVSA +
Sbjct: 1 MGLTTNLHSLSFRSTFFFT-----NPLPCPTLFTFKLSSVSNPKREFPNIRAQVSATS-- 53
Query: 56 KKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKD 115
+ S++ESL S+ ++K KQSN GASSISSGV+LENISKSY+GVTVLKD
Sbjct: 54 ------SNSELESLLST------DRKLIGKQSNNGASSISSGVRLENISKSYEGVTVLKD 101
Query: 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175
VTWEVKKGEKVGL+GVNGAGKTTQLRII GQEEPDSGNVI AK N+K+AFLSQEFEVSM
Sbjct: 102 VTWEVKKGEKVGLIGVNGAGKTTQLRIITGQEEPDSGNVIWAKPNLKVAFLSQEFEVSMG 161
Query: 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235
+TV+EEFMSAFKEEM IA KLE++QKA+E AVDD++LMG+LLDEFDLLQR+AQ V+LD++
Sbjct: 162 KTVKEEFMSAFKEEMGIAMKLEKLQKAIEEAVDDLELMGKLLDEFDLLQRRAQEVDLDSI 221
Query: 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI 295
DAK+SKLM ELGF ++D DRLVASFSSGWQMRMSLGKILLQ+PDLLLLDEPTNHLDLDTI
Sbjct: 222 DAKISKLMSELGFLSEDADRLVASFSSGWQMRMSLGKILLQNPDLLLLDEPTNHLDLDTI 281
Query: 296 EWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQ 355
EWLEGYL KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA +E+Q
Sbjct: 282 EWLEGYLNKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAELVEAQ 341
Query: 356 YAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415
YAAWEKQQ+EIE TKDLI+RLGAGANSGRASSAEKKLE+LQEEEQIEKPFQRKQMKIRFP
Sbjct: 342 YAAWEKQQKEIEATKDLISRLGAGANSGRASSAEKKLEKLQEEEQIEKPFQRKQMKIRFP 401
Query: 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475
E G SGRSVVT+KNL FG+ED++LFN+ANL IERGEK AIIGPNGCGKSTLLKLIMGLEK
Sbjct: 402 ECGLSGRSVVTVKNLGFGFEDKILFNKANLAIERGEKVAIIGPNGCGKSTLLKLIMGLEK 461
Query: 476 PRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD 535
P GEV+LGEHNVLPNYFEQNQAEALDLDKTV+ETV EAA DWRIDDIK LLGRCNFKAD
Sbjct: 462 PMRGEVILGEHNVLPNYFEQNQAEALDLDKTVIETVVEAAVDWRIDDIKALLGRCNFKAD 521
Query: 536 MLDRKVSLLSGGEKIILLY 554
MLDR+VSLLSGGEK L +
Sbjct: 522 MLDRRVSLLSGGEKARLAF 540
|
Source: Arabidopsis arenosa Species: Arabidopsis arenosa Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 554 | ||||||
| TAIR|locus:2177689 | 692 | ABCF5 "ATP-binding cassette F5 | 0.980 | 0.784 | 0.694 | 1e-194 | |
| TAIR|locus:2178168 | 678 | ABCF2 "ATP-binding cassette F2 | 0.971 | 0.793 | 0.670 | 1.3e-185 | |
| TIGR_CMR|GSU_0922 | 645 | GSU_0922 "ABC transporter, ATP | 0.799 | 0.686 | 0.316 | 2.1e-61 | |
| TIGR_CMR|GSU_2093 | 545 | GSU_2093 "ABC transporter, ATP | 0.806 | 0.820 | 0.314 | 1.6e-54 | |
| TIGR_CMR|DET_0224 | 663 | DET_0224 "ABC transporter, ATP | 0.806 | 0.674 | 0.296 | 8e-53 | |
| UNIPROTKB|Q81VE6 | 640 | BA_0262 "ABC transporter, ATP- | 0.806 | 0.698 | 0.298 | 1.5e-51 | |
| TIGR_CMR|BA_0262 | 640 | BA_0262 "ABC transporter, ATP- | 0.806 | 0.698 | 0.298 | 1.5e-51 | |
| TIGR_CMR|BA_0228 | 626 | BA_0228 "ABC transporter, ATP- | 0.805 | 0.712 | 0.297 | 3.2e-49 | |
| UNIPROTKB|Q97RN3 | 513 | SP_0770 "ABC transporter, ATP- | 0.794 | 0.857 | 0.299 | 3.1e-44 | |
| UNIPROTKB|Q81Z88 | 514 | BAS0370 "ABC transporter, ATP- | 0.787 | 0.848 | 0.288 | 9.3e-43 |
| TAIR|locus:2177689 ABCF5 "ATP-binding cassette F5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1886 (669.0 bits), Expect = 1.0e-194, P = 1.0e-194
Identities = 380/547 (69%), Positives = 429/547 (78%)
Query: 9 NLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVES 68
+LRS+FF+ L R +P S +S++ ++ I QVS ++E S+ + Q ++ES
Sbjct: 11 DLRSTFFTGL--RTSPIPSNFIKISSISNPRRDISTIRAQVSTISLET-SVKQRQDEIES 67
Query: 69 LFSSSADEFEN-KKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEXXXXXXXX 127
LFS + ++ +K + K S GAS ISSGVKLENI KSYKGVTVLKDVTWE
Sbjct: 68 LFSKQPSQQDSDRKRNGKSSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEKVG 127
Query: 128 XXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187
AGKTTQLRII GQEEPDSGNVIKAK NMK+AFLSQEFEVSMS+TVREEFM+AFK
Sbjct: 128 LVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKVAFLSQEFEVSMSKTVREEFMTAFK 187
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
EEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPELG
Sbjct: 188 EEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPELG 247
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXEPTNHLDLDTIEWLEGYLGKQDV 307
F +D DRLVASFS GWQMRMSLGKI EPTNHLDLDTIEWLEGYL KQDV
Sbjct: 248 FAPEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQDV 307
Query: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367
PMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ++I+
Sbjct: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKDID 367
Query: 368 QTKDLINRLXXXXXXXXXXXXXXXXXXXXXXXXXXXPFQRKQMKIRFPERGRSGRSVVTI 427
TKDLI RL PFQRKQMKIRFPERG SGRSVV +
Sbjct: 368 STKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVVNV 427
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
KN++FG+ED++LF +ANL+IERGEK AI+GPNGCGKSTLLKLIMGLEKP GEV+LGEHN
Sbjct: 428 KNIDFGFEDKMLFKKANLSIERGEKIAILGPNGCGKSTLLKLIMGLEKPVKGEVILGEHN 487
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
VLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLSGG
Sbjct: 488 VLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLSGG 547
Query: 548 EKIILLY 554
EK L +
Sbjct: 548 EKARLAF 554
|
|
| TAIR|locus:2178168 ABCF2 "ATP-binding cassette F2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1800 (638.7 bits), Expect = 1.3e-185, P = 1.3e-185
Identities = 373/556 (67%), Positives = 425/556 (76%)
Query: 1 MDVTTT--TTNLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKS 58
M +TT + NLRS+FF T + K +S++ ++ P I VSAA+
Sbjct: 1 MVLTTNLYSLNLRSTFFFTNTITCPTLFTFK--LSSVSNPRRVFPNIRAHVSAAS----- 53
Query: 59 IAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTW 118
+ S++ESL S+ ++K +KQSN GASSISSGV+LENISKSY+G+TVLKDVTW
Sbjct: 54 ---SNSELESLLST------DRKLISKQSNNGASSISSGVRLENISKSYEGITVLKDVTW 104
Query: 119 EXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178
E AGKTTQLRII GQEEPDSGNVI AK N+K+AFLSQEFEVSM +TV
Sbjct: 105 EVKKGEKVGLIGVNGAGKTTQLRIITGQEEPDSGNVIWAKPNLKVAFLSQEFEVSMGKTV 164
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238
+EEFM FKEEMEIA KLE +QKA+E AVDD++LMG+LLDEFDLLQR+AQ V+LD++ AK
Sbjct: 165 KEEFMCTFKEEMEIARKLENLQKAIEEAVDDLELMGKLLDEFDLLQRRAQEVDLDSIHAK 224
Query: 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXEPTNHLDLDTIEWL 298
+SKLM ELGF ++D DRLVASFSSGWQMRMSLGKI EPTNHLDLDTIEWL
Sbjct: 225 ISKLMSELGFVSEDADRLVASFSSGWQMRMSLGKILLQNPDLLLLDEPTNHLDLDTIEWL 284
Query: 299 EGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAA 358
EGYL KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT++GNYSQYV+ KA +E+QYAA
Sbjct: 285 EGYLIKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTFDGNYSQYVISKAELVEAQYAA 344
Query: 359 WEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXXXXXXXXPFQRKQMKIRFPERG 418
WEKQQ+EIE TKDLI+RL PFQRKQMKIRFPE G
Sbjct: 345 WEKQQKEIEATKDLISRLSAGANSGRASSAEKKLEKLQEEELIEKPFQRKQMKIRFPECG 404
Query: 419 RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
SGRSVVT+KNL FG++D++LFN+ANL IERGEK AIIGPNGCGKSTLLKLIMGLEKP
Sbjct: 405 LSGRSVVTVKNLVFGFDDKMLFNKANLAIERGEKVAIIGPNGCGKSTLLKLIMGLEKPMR 464
Query: 479 GEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLD 538
GEV+LGEHNVLPNYFEQNQAEA DLDKTV+ETV EAA DWRIDDIK LLGRCNFKADMLD
Sbjct: 465 GEVILGEHNVLPNYFEQNQAEAQDLDKTVIETVVEAAVDWRIDDIKALLGRCNFKADMLD 524
Query: 539 RKVSLLSGGEKIILLY 554
RKVSLLSGGEK L +
Sbjct: 525 RKVSLLSGGEKARLAF 540
|
|
| TIGR_CMR|GSU_0922 GSU_0922 "ABC transporter, ATP-binding protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 143/452 (31%), Positives = 238/452 (52%)
Query: 100 LENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L +SK + G ++ ++ W AGK+T +RI+AG E SG +I A+
Sbjct: 4 LRKLSKDFAGTSLFAEIDWHLKKGERVGLVGENGAGKSTLMRIVAGLVEQTSGELIFARG 63
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
+ +L Q+ V+ R + E M+A ++ + +L + LE+ D G L+
Sbjct: 64 -ATVGYLPQDGIVTRGRGLLAEAMTALEDLQSLERELHELTSRLENISHDAPEHGECLER 122
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXX 279
+ LQ + + +++A+ +++ LGFT D R FS GWQMR++L K+
Sbjct: 123 YGRLQEEFRLRGGYSMEAEACRVLDGLGFTTGDRQRDCGEFSGGWQMRIALAKLLLKKPN 182
Query: 280 XXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEG 339
EPTNHLD++ WLEGYL + ++++SHDR F+DQ+C +I E G Y
Sbjct: 183 VLLLDEPTNHLDIEARNWLEGYLQEYPHSVILVSHDRFFMDQVCHRITEVWNGTLTDYHC 242
Query: 340 NYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXXXX 399
+YS+Y+ + + + A +Q E+ + +D INR
Sbjct: 243 SYSRYLTAREERVAALLEAKRRQDEEVAKIEDFINRFRYKADKAALVQSRVKQLEKIERI 302
Query: 400 XXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPN 459
P +RK+++ RFP+ +SGR V+ +K + Y ++ + +LT+E+GE+ A++G N
Sbjct: 303 VL--PPERKKIRFRFPDPPKSGRIVLELKGVTKAYGSHVVLDGIDLTVEKGERIALVGHN 360
Query: 460 GCGKSTLLKLIMGLEKP-RGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETV-AEAAED 517
G GKSTL+ ++ G KP +GGE + G HNV+ +YF Q+QA+ LD KT E + A+A D
Sbjct: 361 GAGKSTLMGVLAG--KPFQGGERIAG-HNVVADYFAQDQAQVLDGAKTAHEELLADAPFD 417
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+ ++ +LG F D + ++V +LSGGE+
Sbjct: 418 M-VPQLRDILGAFLFTGDDIHKRVEVLSGGER 448
|
|
| TIGR_CMR|GSU_2093 GSU_2093 "ABC transporter, ATP-binding protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 144/458 (31%), Positives = 221/458 (48%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
+ L NI+K + + +D +++ AGKTT RII G+EE D+G + A
Sbjct: 2 IHLSNITKQHGNQLLFRDASFQILPGSRTGLVGPNGAGKTTIFRIITGEEEVDAGEITCA 61
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
K I + SQ+ RT EE M+ E + +A +L+ ++ A+ +DD D M LL
Sbjct: 62 KRT-SIGYFSQDVGEMAGRTALEEVMAVSAETVRLAAELKEMEAAMAEPMDD-DAMAALL 119
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXX 277
+ + + + LD + ++ LG D D V SFS GW+MR++L I
Sbjct: 120 ERYGTAMEEFEHRGGYDLDTRARTILTGLGIGPDRYDHPVESFSGGWKMRIALAGILTLQ 179
Query: 278 XXXXXXXEPTNHLDLDTIEWLEGYL-GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336
EPTNHLD+++I WLE +L G+ +++ SHDR F++++ T+I+E T
Sbjct: 180 PDVLLLDEPTNHLDVESIIWLEEWLAGEFTGALLMTSHDRDFMNRIVTRIIEVADKTVTT 239
Query: 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXX 396
Y GNY Y E+ E A+ ++QQ + + ++ I R
Sbjct: 240 YGGNYDFYERERDIRREQLLASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKLEKI 299
Query: 397 XXXXXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE-----DRLLFNRANLTIERGE 451
P + + ++ F + RSG V L + ++ +F+ + I R
Sbjct: 300 DRIEI--PPEERVIRFEFNDPPRSGDDVAVFNGLAKSWSLPGGGEKSVFSGVSGVIRRQN 357
Query: 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETV 511
K A++G NG GKST LK++ G +P G V LG NV YF Q+ E LD KTV ETV
Sbjct: 358 KIAVVGVNGAGKSTFLKVLAGRTEPTDGSVALGA-NVSLGYFSQHAMELLDPKKTVFETV 416
Query: 512 AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+A I I+ LLG F D +D+++ LSGGEK
Sbjct: 417 QDAMPLATIGVIRNLLGAFLFSGDAVDKRIENLSGGEK 454
|
|
| TIGR_CMR|DET_0224 DET_0224 "ABC transporter, ATP-binding protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 134/452 (29%), Positives = 212/452 (46%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
+ ++N+SKS+ ++ V +GKTT +IAG+ E D G +I
Sbjct: 2 LNIQNLSKSFGVRSLYTGVNLNIGARDRLALLGPNGSGKTTLFEMIAGRLEADEGKIILR 61
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+ + +L Q+ + S + + + SA ++ K+ +Q L D + RL+
Sbjct: 62 RGTT-VGYLEQDIKPSSKQPLLKAVSSASDRLSSLSHKISLLQGELAEEKDGSE-NNRLM 119
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXX 277
+E LQ +A+ + + ++ LGF D DR + FS GW MR L K+
Sbjct: 120 NELGELQHSFEALGGYNAEQEAKLILAGLGFKPVDFDRPLHEFSGGWLMRAELAKLLFLS 179
Query: 278 XXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY 337
EPTNHLDL++ W E YL + ++ SHDRAFL+ + TKI+ E +R Y
Sbjct: 180 PDILILDEPTNHLDLESTRWFESYLKQYSGSVLFTSHDRAFLNSIATKILSLEDQKARLY 239
Query: 338 EGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXX 397
GNY Y+ E+ + + +QQ I++ I R
Sbjct: 240 SGNYDSYLRERELRLNQLESQARRQQELIDKETKFIERFRYKATKASQVQSRIKKLDKLS 299
Query: 398 XXXXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIG 457
P Q K++ FPE RSG V+ ++NL Y D +++ L + RG+K A++G
Sbjct: 300 AVAI--PRQTKKIHFNFPEPERSGHDVIKLRNLTKSYGDLVIYQGLELVLARGDKAALVG 357
Query: 458 PNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED 517
PNG GK+TLLK++ G+ G LG NV YF Q E+L ++E + D
Sbjct: 358 PNGAGKTTLLKILAGVMPFDSGYRNLGA-NVNTAYFAQYYVESLSPANNLIEELETILPD 416
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
++G+LG F D + +++S+LSGGEK
Sbjct: 417 APEQQLRGMLGAFLFSGDDVKKRISVLSGGEK 448
|
|
| UNIPROTKB|Q81VE6 BA_0262 "ABC transporter, ATP-binding protein" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 136/455 (29%), Positives = 221/455 (48%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ +SK Y T+L ++ E AGK+T L+IIAG+ D G +IK
Sbjct: 4 LQVNALSKLYGAETILANIKLEVQTKDRIALVGRNGAGKSTLLKIIAGELSHDGGEIIKP 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL--ESAVDDMDLMGR 215
K ++ + +L+Q + S T+ +E ++ F ++ KL R+++ + E + R
Sbjct: 64 K-DVSMGYLAQNTGLETSLTIWDEMLTVFTHLQQMETKLRRLEQEMGKEENFSNEATYER 122
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXX 275
LL ++D LQ + +A + ++ LGF + +++ S G + R++LGK+
Sbjct: 123 LLADYDQLQLDYKDQGGYQYEADIRSILSGLGFPVETHQTTISTLSGGQKTRLALGKLLL 182
Query: 276 XXXXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
EPTNHLD++T+ WLE YL ++I+SHDR FLD+L T++ E SR
Sbjct: 183 TKPDLLILDEPTNHLDIETLTWLEQYLQGYPGAILIVSHDRYFLDKLVTQVYEISNKESR 242
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXX 395
+ GNYS+Y+ K+A E + +EKQQ EI + +D + +
Sbjct: 243 RFVGNYSKYLDLKSALYEQEMKRYEKQQDEIAKLEDFVQK--NIARASTTKRAQSRRKQL 300
Query: 396 XXXXXXXXPF-QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTA 454
P K F +SG V+ +K+ GY+ + + + RG+ A
Sbjct: 301 DRMELLTRPLGDSKSASFHFDIEKQSGNDVLQVKDATIGYDKDPIIEHVTMRLTRGDSVA 360
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514
++GPNG GKSTLLK I+ G+V G NV Y++Q QA L K VL + +
Sbjct: 361 LVGPNGIGKSTLLKSIVNKLPLLHGDVSFGS-NVSVGYYDQEQAN-LTSSKRVLNELWDE 418
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+I+ +LG F D + + VS LSGG+K
Sbjct: 419 YPLQPEKEIRTILGNFLFTGDDVLKPVSSLSGGQK 453
|
|
| TIGR_CMR|BA_0262 BA_0262 "ABC transporter, ATP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 136/455 (29%), Positives = 221/455 (48%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ +SK Y T+L ++ E AGK+T L+IIAG+ D G +IK
Sbjct: 4 LQVNALSKLYGAETILANIKLEVQTKDRIALVGRNGAGKSTLLKIIAGELSHDGGEIIKP 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL--ESAVDDMDLMGR 215
K ++ + +L+Q + S T+ +E ++ F ++ KL R+++ + E + R
Sbjct: 64 K-DVSMGYLAQNTGLETSLTIWDEMLTVFTHLQQMETKLRRLEQEMGKEENFSNEATYER 122
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXX 275
LL ++D LQ + +A + ++ LGF + +++ S G + R++LGK+
Sbjct: 123 LLADYDQLQLDYKDQGGYQYEADIRSILSGLGFPVETHQTTISTLSGGQKTRLALGKLLL 182
Query: 276 XXXXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
EPTNHLD++T+ WLE YL ++I+SHDR FLD+L T++ E SR
Sbjct: 183 TKPDLLILDEPTNHLDIETLTWLEQYLQGYPGAILIVSHDRYFLDKLVTQVYEISNKESR 242
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXX 395
+ GNYS+Y+ K+A E + +EKQQ EI + +D + +
Sbjct: 243 RFVGNYSKYLDLKSALYEQEMKRYEKQQDEIAKLEDFVQK--NIARASTTKRAQSRRKQL 300
Query: 396 XXXXXXXXPF-QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTA 454
P K F +SG V+ +K+ GY+ + + + RG+ A
Sbjct: 301 DRMELLTRPLGDSKSASFHFDIEKQSGNDVLQVKDATIGYDKDPIIEHVTMRLTRGDSVA 360
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514
++GPNG GKSTLLK I+ G+V G NV Y++Q QA L K VL + +
Sbjct: 361 LVGPNGIGKSTLLKSIVNKLPLLHGDVSFGS-NVSVGYYDQEQAN-LTSSKRVLNELWDE 418
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+I+ +LG F D + + VS LSGG+K
Sbjct: 419 YPLQPEKEIRTILGNFLFTGDDVLKPVSSLSGGQK 453
|
|
| TIGR_CMR|BA_0228 BA_0228 "ABC transporter, ATP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 137/460 (29%), Positives = 230/460 (50%)
Query: 100 LENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+ N++KS+ G + ++++ E +GKTT +++ G E D+G I K
Sbjct: 6 VNNVTKSFGGNIIFENISLEIKNGERVGLVGRNGSGKTTIFQLLTGMESLDAG-AIHMKK 64
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
+I ++Q + S TV E SAFK E E+ ++ ++K + + ++ +L++
Sbjct: 65 GTRIGHVAQIPKFDESMTVYEVLSSAFKIEKELEREMRTLEKDMAEE-QESSVLQKLMER 123
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXX 279
+ ++Q K + ++A + K+ L T + R S G Q ++SL +
Sbjct: 124 YGIIQEKFAFLGGYEIEANIMKVANGLQVT-ELFPRSFLELSGGEQTKVSLAYMLLQKPD 182
Query: 280 XXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEG 339
EPTNHLDL +EWLE +L + + +++ISHDR FLD++ TKI + E G Y
Sbjct: 183 LLLLDEPTNHLDLFAVEWLEQFLKEYNGTVMVISHDRYFLDEVVTKIFDLEDGEIHVYHT 242
Query: 340 NYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXX------XXXXXXXXX 393
NYS++V EK + ++ A+++QQ++I++ K+ I RL
Sbjct: 243 NYSRFVEEKEERLLQEFQAYQEQQKKIKKMKEAIKRLREWANQANPPNEGLHKRARSMER 302
Query: 394 XXXXXXXXXXPF-QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEK 452
P +RKQ+ ++F + RSG+ VV IK + G+ D LFN NL + E+
Sbjct: 303 ALERMQKLKKPILERKQIGLQFEGQDRSGKDVVVIKEVSKGFADHPLFNEVNLHVRFQER 362
Query: 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVA 512
AI+G NG GK+TLLKL++ +P GE+ +G +V Y Q+ + D VLE
Sbjct: 363 AAIVGRNGTGKTTLLKLLLEEIEPDAGEIRIGS-SVKIGYLSQHAYGNMKSD--VLEAFR 419
Query: 513 EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIIL 552
E + + +L + F + +KV+ LSGGEK+ L
Sbjct: 420 EYVAVTE-GEARHILAKFLFYGPAVFKKVTQLSGGEKMRL 458
|
|
| UNIPROTKB|Q97RN3 SP_0770 "ABC transporter, ATP-binding protein" [Streptococcus pneumoniae TIGR4 (taxid:170187)] | Back alignment and assigned GO terms |
|---|
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 136/454 (29%), Positives = 218/454 (48%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
++++N+S + + +DV++ GK+T + I+ G+ PD G V +
Sbjct: 4 LEVKNLSHGFGDRAIFEDVSFRLLKGEHIGLVGANGEGKSTFMSIVTGKMLPDEGKVEWS 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
K + +L Q ++ ++VR+ +AF E + ++ + ++ A D D+ L+
Sbjct: 64 KY-VTAGYLDQHSVLAERQSVRDVLRTAFDELFKAEARINDLY--MKMAEDGADV-DALM 119
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG-DRLVASFSSGWQMRMSLGKIXXX 276
+E LQ + ++ + TLDAK+ ++ LG D G D V S S G + ++ L K+
Sbjct: 120 EEVGELQDRLESRDFYTLDAKIDEVARALG-VMDFGMDTDVTSLSGGQRTKVLLAKLLLE 178
Query: 277 XXXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336
EPTN+LD + I+WL+ YL + V+ISHD FL+ + + E
Sbjct: 179 KPDILLLDEPTNYLDAEHIDWLKRYLQNYENAFVLISHDIPFLNDVINIVYHVENQQLTR 238
Query: 337 YEGNYSQYVLEKAAWIESQY-AAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXX 395
Y G+Y Q+ E A +SQ AA+E+QQ+EI KD + R
Sbjct: 239 YSGDYYQFQ-EVYAMKKSQLEAAYERQQKEIADLKDFVARNKARVATRNMAMSRQKKLDK 297
Query: 396 XXXXXXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAI 455
+ + P R GR + KNL+ GY DR L NLT ER +K AI
Sbjct: 298 MDIIELQSEKPKPSFDFK-PAR-TPGRFIFQAKNLQIGY-DRPLTKPLNLTFERNQKVAI 354
Query: 456 IGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAA 515
IG NG GK+TLLK ++G+ P GEV G++ L YFEQ + E + +T LE V A
Sbjct: 355 IGANGIGKTTLLKSLLGIISPIAGEVERGDYLEL-GYFEQ-EVEGGNR-QTPLEAVWNAF 411
Query: 516 EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+++ L RC ++ ++ +LSGGE+
Sbjct: 412 PALNQAEVRAALARCGLTTKHIESQIQVLSGGEQ 445
|
|
| UNIPROTKB|Q81Z88 BAS0370 "ABC transporter, ATP-binding protein" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
Identities = 130/450 (28%), Positives = 207/450 (46%)
Query: 100 LENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+EN+S SY T+L + + GK+T LRI+ G+ D GN I+
Sbjct: 6 VENLSHSYGEKTILYNACFRLLKGEHVGVVGGNGIGKSTLLRILTGELIHDDGN-IEWFP 64
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
++KI FL Q ++ T+ SAF + I ++ ++ + + A + + +LL +
Sbjct: 65 HVKIGFLQQHMDLQEGMTIEGYLQSAFADLYAIECEMLKIAEEMNGAGE----VEKLLVK 120
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXX 279
+ LQ ++ N + A+V ++ LG + V+ S G + ++ LGK+
Sbjct: 121 YGELQTILESSNFYHIHAEVEEVAIGLGLFEIGLKKDVSKLSGGQRTKLLLGKLLLEKAD 180
Query: 280 XXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEG 339
EPTN+LD IEWL+ YL + VIISHD FL+ + I E G + Y G
Sbjct: 181 VLLLDEPTNYLDTAHIEWLQSYLRLYEKAYVIISHDELFLNSITNVIFHLEGGKVKRYVG 240
Query: 340 NYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXXXX 399
NY ++V + +A+ KQQ+EI Q + I +
Sbjct: 241 NYEKFVQSYQVQKKQLQSAYVKQQKEISQLETFIQK--NKIRKAKQAKSREKVLEKMQRI 298
Query: 400 XXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPN 459
P R + E S ++ + L GY D L NL +++GEK AIIG N
Sbjct: 299 EKIHPVPRSRFDFNVYEEPVS--RILQAEKLRIGYSDPLC-PELNLQVKKGEKIAIIGHN 355
Query: 460 GCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR 519
G GK+T+LK ++G KP G + +GE V P YF Q + + + T LE V D
Sbjct: 356 GIGKTTMLKTLLGQIKPLSGSISVGER-VNPAYFAQEEFAS---ETTPLEKVWAERPDMT 411
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+++ L +C K + + + + LLSGGE+
Sbjct: 412 KKEVRQALAKCGLKEEHVLKPIRLLSGGEQ 441
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9LV93 | AB5F_ARATH | No assigned EC number | 0.7806 | 0.9801 | 0.7846 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 554 | |||
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-145 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 9e-83 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 6e-81 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 9e-79 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-68 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-60 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 6e-52 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-46 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-34 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-33 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-31 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-30 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-29 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-28 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-27 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 5e-27 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 8e-27 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-25 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-25 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 8e-25 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-24 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-23 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-23 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-23 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 7e-23 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 8e-23 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 8e-23 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 9e-23 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-22 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-22 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-22 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-22 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 7e-22 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-21 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-21 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-21 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-21 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-21 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 8e-21 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 9e-21 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-20 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-20 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-20 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-20 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-20 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-20 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-20 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-20 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-20 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 5e-20 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 5e-20 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 6e-20 | |
| pfam12848 | 85 | pfam12848, ABC_tran_2, ABC transporter | 6e-20 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 9e-20 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-19 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-19 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-19 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-19 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-19 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-19 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-19 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-19 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 4e-19 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-19 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 6e-19 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 7e-19 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 9e-19 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-18 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-18 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-18 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-18 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-18 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 7e-18 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 8e-18 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-17 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-17 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-17 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-17 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-17 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-17 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 4e-17 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 5e-17 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 5e-17 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 6e-17 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 7e-17 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 7e-17 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 8e-17 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 8e-17 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 9e-17 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-16 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-16 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-16 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-16 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-16 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-16 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-16 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-16 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-16 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-16 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 6e-16 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 6e-16 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 6e-16 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 7e-16 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 7e-16 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 8e-16 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 8e-16 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-15 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-15 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-15 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-15 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-15 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-15 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-15 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-15 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 6e-15 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 7e-15 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 7e-15 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 7e-15 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 7e-15 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 8e-15 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 9e-15 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 9e-15 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-14 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-14 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-14 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-14 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-14 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-14 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-14 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-14 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-14 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-14 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-14 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-14 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-14 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 4e-14 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-14 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 6e-14 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 7e-14 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 8e-14 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-13 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-13 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-13 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-13 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-13 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-13 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-13 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-13 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-13 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-13 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-13 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-13 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-13 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 4e-13 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 4e-13 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 6e-13 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 6e-13 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 7e-13 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 9e-13 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 1e-12 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-12 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-12 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-12 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-12 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-12 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-12 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-12 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-12 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-12 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-12 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 3e-12 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-12 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-12 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 4e-12 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-12 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-12 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 5e-12 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 5e-12 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 6e-12 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 6e-12 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 6e-12 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 7e-12 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 8e-12 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 8e-12 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 9e-12 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-11 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-11 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-11 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-11 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-11 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-11 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-11 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-11 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-11 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-11 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-11 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-11 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-11 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-11 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-11 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-11 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-11 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-11 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-11 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-11 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-11 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 4e-11 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 5e-11 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 6e-11 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 6e-11 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 6e-11 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 7e-11 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 8e-11 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 9e-11 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-10 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-10 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-10 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-10 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 1e-10 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-10 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-10 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-10 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-10 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-10 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-10 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-10 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-10 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 3e-10 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-10 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 3e-10 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-10 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-10 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-10 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 4e-10 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 5e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-10 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 5e-10 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 5e-10 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 5e-10 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 5e-10 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 6e-10 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 6e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 6e-10 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 6e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 6e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 7e-10 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 7e-10 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 8e-10 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 8e-10 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 8e-10 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 8e-10 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 8e-10 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 9e-10 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-09 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-09 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-09 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-09 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-09 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-09 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-09 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-09 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 3e-09 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-09 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 4e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-09 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-09 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 5e-09 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 5e-09 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 5e-09 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 6e-09 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 6e-09 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 7e-09 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 7e-09 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 8e-09 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 8e-09 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 8e-09 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 8e-09 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 9e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-08 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-08 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-08 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-08 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-08 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-08 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-08 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-08 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-08 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-08 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-08 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-08 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-08 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-08 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-08 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-08 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-08 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-08 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 3e-08 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-08 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-08 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-08 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-08 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 4e-08 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-08 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 4e-08 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 5e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-08 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 5e-08 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 6e-08 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 6e-08 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 7e-08 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 7e-08 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 7e-08 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 8e-08 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 8e-08 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 8e-08 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 8e-08 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 9e-08 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 9e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 9e-08 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 9e-08 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-07 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-07 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-07 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-07 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-07 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-07 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-07 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-07 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 1e-07 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-07 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-07 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-07 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-07 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-07 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 2e-07 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-07 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 2e-07 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-07 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-07 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-07 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 3e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-07 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-07 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-07 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-07 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-07 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-07 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 4e-07 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 5e-07 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 5e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-07 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 5e-07 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 6e-07 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 7e-07 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 7e-07 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 7e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 7e-07 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 7e-07 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 7e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 8e-07 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 9e-07 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-06 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-06 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-06 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-06 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-06 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-06 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-06 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-06 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-06 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-06 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-06 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-06 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-06 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-06 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-06 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-06 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-06 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-06 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-06 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-06 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-06 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-06 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-06 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 3e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-06 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-06 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-06 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 3e-06 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-06 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-06 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-06 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 4e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-06 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-06 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 4e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 5e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-06 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 6e-06 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 6e-06 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 7e-06 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 7e-06 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 7e-06 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 8e-06 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 8e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 8e-06 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 8e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 9e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 9e-06 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-05 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-05 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-05 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-05 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-05 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-05 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-05 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-05 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-05 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-05 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-05 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-05 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-05 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-05 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-05 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-05 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-05 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 3e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-05 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 3e-05 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 4e-05 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 4e-05 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-05 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 5e-05 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 5e-05 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 5e-05 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 6e-05 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 6e-05 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 7e-05 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 7e-05 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 7e-05 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 7e-05 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 7e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 8e-05 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 8e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 8e-05 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 8e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 9e-05 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-04 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-04 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-04 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-04 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-04 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-04 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-04 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 2e-04 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-04 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-04 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 3e-04 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-04 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 4e-04 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 4e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-04 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-04 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-04 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 4e-04 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 4e-04 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 4e-04 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 5e-04 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 5e-04 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-04 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 5e-04 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 6e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 6e-04 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 6e-04 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 6e-04 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 6e-04 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 7e-04 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 7e-04 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 7e-04 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 7e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 7e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 8e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 9e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.001 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.001 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 0.001 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 0.001 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.001 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.001 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 0.001 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 0.001 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 0.001 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 0.001 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 0.001 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 0.001 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.001 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 0.001 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 0.001 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 0.002 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 0.002 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 0.002 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 0.002 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 0.002 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 0.002 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 0.002 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 0.002 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 0.002 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 0.002 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.002 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.002 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.003 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.003 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.003 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 0.003 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 0.003 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 0.003 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 0.003 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 0.003 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.003 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 0.003 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.003 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 0.003 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 0.003 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 0.003 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 0.004 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.004 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 0.004 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 0.004 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 0.004 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 0.004 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 429 bits (1106), Expect = e-145
Identities = 186/455 (40%), Positives = 279/455 (61%), Gaps = 18/455 (3%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
LEN+S +Y +L++V+ + GE++GLVG NGAGK+T L+I+AG+ EPDSG V + K
Sbjct: 5 TLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK 64
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+++ +LSQE + +TV + + F E E+ +LE L A D +L+ L
Sbjct: 65 -GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALL--ADPDDELLAELEA 121
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
+ L TL+A+ + + LGF +D R V+S S GW+ R++L + LL++P
Sbjct: 122 LLEELDG-------WTLEARAEEALLGLGFPDED--RPVSSLSGGWRRRVALARALLEEP 172
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYE 338
DLLLLDEPTNHLDL++IEWLE YL + ++++SHDR FLD + T I+E + G Y+
Sbjct: 173 DLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYK 232
Query: 339 GNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN-SGRASSAEKKLERLQE 397
GNYS Y+ +KA + + AA+EKQQ+E+ + ++ I R A A+ + +A S K+LE+L+
Sbjct: 233 GNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEA 292
Query: 398 EEQIEKPFQR-KQMKIRF-PERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTA 454
E+P + K + RF P R G+ V+ +N+ GY+ RLL + I+RG++ A
Sbjct: 293 RLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIA 352
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514
I+GPNG GKSTLLKL+ G P G V +GE V YF+Q++ E LD DKTVLE ++E
Sbjct: 353 IVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-TVKIGYFDQHRDE-LDPDKTVLEELSEG 410
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
D +++ LGR F + ++ V +LSGGEK
Sbjct: 411 FPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEK 445
|
Length = 530 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 267 bits (686), Expect = 9e-83
Identities = 147/455 (32%), Positives = 238/455 (52%), Gaps = 21/455 (4%)
Query: 102 NISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
+SK +LKD++ G K+G++G+NGAGK+T LRI+AG ++ +G A
Sbjct: 9 RVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-G 67
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEF 220
+K+ +L QE ++ ++TVRE E + + + DMD LL E
Sbjct: 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMD---ALLAEQ 124
Query: 221 DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
LQ A + LD K+ M L D D V S G + R++L ++LL PD+
Sbjct: 125 AELQEIIDAADAWDLDRKLEIAMDALRCPPWDAD--VTKLSGGERRRVALCRLLLSKPDM 182
Query: 281 LLLDEPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDRAFLDQLCTKIVETEMGVSRTYE 338
LLLDEPTNHLD +++ WLE +L Q+ P +V ++HDR FLD + I+E + G +E
Sbjct: 183 LLLDEPTNHLDAESVAWLEQHL--QEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWE 240
Query: 339 GNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEE 398
GNYS ++ +K +E + +Q+ +++ + + R A ++ + + E L +
Sbjct: 241 GNYSSWLEQKEKRLEQEEKEESARQKALKRELEWV-RSSPKARQAKSKARLARYEELLSQ 299
Query: 399 EQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGP 458
E ++ + +I P R G V+ +NL G+ D+LL + + + G +IGP
Sbjct: 300 EFQKRN---ETAEIYIPPGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGP 356
Query: 459 NGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW 518
NG GKSTL ++I G E+P G + +GE V Y +Q++ +ALD +KTV E ++ +
Sbjct: 357 NGAGKSTLFRMITGQEQPDSGTIKIGE-TVKLAYVDQSR-DALDPNKTVWEEISGGLDII 414
Query: 519 RIDDI----KGLLGRCNFKADMLDRKVSLLSGGEK 549
++ + +GR NFK +KV LSGGE+
Sbjct: 415 QLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGER 449
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 263 bits (675), Expect = 6e-81
Identities = 145/443 (32%), Positives = 232/443 (52%), Gaps = 20/443 (4%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171
+LKD++ G K+G++G+NGAGK+T LRI+AG ++ G A +K+ +L QE +
Sbjct: 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-GIKVGYLPQEPQ 80
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
+ +TVRE E + + A D D L E LQ A +
Sbjct: 81 LDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFD---ALAAEQGELQEIIDAAD 137
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
LD+++ M L D V S G + R++L ++LL+ PD+LLLDEPTNHLD
Sbjct: 138 AWDLDSQLEIAMDALRCPPWDAK--VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
Query: 292 LDTIEWLEGYLGKQDVP--MVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKA 349
+++ WLE +L D P +V ++HDR FLD + I+E + G +EGNYS ++ +KA
Sbjct: 196 AESVAWLEQFL--HDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQKA 253
Query: 350 AWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQ 409
+ + +Q+ +++ + + R A ++ + + E L EE ++ +
Sbjct: 254 KRLAQEEKQEAARQKALKRELEWV-RQSPKARQAKSKARLARYEELLSEEYQKRN---ET 309
Query: 410 MKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKL 469
+I P R G V+ +NL + DRLL + + ++ G IIGPNG GKSTL K+
Sbjct: 310 NEIFIPPGPRLGDKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKM 369
Query: 470 IMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI----KG 525
I G E+P G + +GE V Y +Q++ +ALD +KTV E ++ + ++ + +
Sbjct: 370 ITGQEQPDSGTIKIGE-TVKLAYVDQSR-DALDPNKTVWEEISGGLDIIKVGNREIPSRA 427
Query: 526 LLGRCNFKADMLDRKVSLLSGGE 548
+GR NFK +KV +LSGGE
Sbjct: 428 YVGRFNFKGGDQQKKVGVLSGGE 450
|
Length = 556 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 256 bits (657), Expect = 9e-79
Identities = 152/467 (32%), Positives = 250/467 (53%), Gaps = 48/467 (10%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGE--KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
ENIS VK G + GL+G NG GK+T ++I+ G EP +GNV
Sbjct: 18 ENIS---------------VKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLD- 61
Query: 159 SNMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
N ++ L Q+ FE TV + + E E+ + +R+ E + +D +
Sbjct: 62 PNERLGKLRQDQFAFE---EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVAD 118
Query: 216 LLDEFDLLQRKAQAVNLD--TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
L +F +D T +A+ +L+ +G + L++ + GW++R+ L +
Sbjct: 119 LEVKF---------AEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQA 169
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333
L +PD+LLLDEPTN+LD++TI WLE L +++ M+IISHDR FL+ +CT + + + G
Sbjct: 170 LFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGE 229
Query: 334 SRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKL 392
R Y GNY +Y+ E A K++ +I + + ++R A A+ + A+S K++
Sbjct: 230 LRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQI 289
Query: 393 ERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEK 452
++++ EE KP R+ IRF + + R+ + ++NL G+++ LF NL +E GE+
Sbjct: 290 DKIKLEEV--KPSSRQNPFIRFEQDKKLHRNALEVENLTKGFDNGPLFKNLNLLLEAGER 347
Query: 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVA 512
AIIG NG GK+TLL+ ++G +P G V E N Y+ Q+ A + D T+ + ++
Sbjct: 348 LAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-NANIGYYAQDHAYDFENDLTLFDWMS 406
Query: 513 EAAEDWRI--DD---IKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554
+ WR DD ++G LGR F D + + V +LSGGEK +L+
Sbjct: 407 Q----WRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLF 449
|
Length = 530 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 231 bits (592), Expect = 3e-68
Identities = 157/473 (33%), Positives = 253/473 (53%), Gaps = 43/473 (9%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ + S+ +L + ++ E+V LVG NGAGK+T ++I+ G+ D G +I
Sbjct: 4 ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYE 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+ ++ +A L Q+ ++ TV + F++ EE A L+R D + L
Sbjct: 64 Q-DLIVARLQQDPPRNVEGTVYD-FVAEGIEE--QAEYLKRYHDISHLVETDP--SEKNL 117
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
+E LQ + NL L+ ++++++ +LG D D ++S S GW + +LG+ L+ +
Sbjct: 118 NELAKLQEQLDHHNLWQLENRINEVLAQLGL---DPDAALSSLSGGWLRKAALGRALVSN 174
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY 337
PD+LLLDEPTNHLD++TIEWLEG+L ++ ISHDR+F+ + T+IV+ + G +Y
Sbjct: 175 PDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSY 234
Query: 338 EGNYSQYVLEKAAWI---ESQYAAWEKQ--QRE--IEQTKDLINRLGAGA----NSGRAS 386
GNY QY+LEK + E Q A ++++ Q E I Q G A N GR
Sbjct: 235 PGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQ--------GIKARRTRNEGRV- 285
Query: 387 SAEKKL--ERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRAN 444
A K L ER + E + K++ E RSG+ V ++N+ + + + L +
Sbjct: 286 RALKALRRERSERREVMGT------AKMQVEEASRSGKIVFEMENVNYQIDGKQLVKDFS 339
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504
++RG+K A+IGPNGCGK+TLLKL++G + G + G + YF+Q++AE LD +
Sbjct: 340 AQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVA-YFDQHRAE-LDPE 397
Query: 505 KTVLETVAEAAEDWRIDDIK----GLLGRCNFKADMLDRKVSLLSGGEKIILL 553
KTV++ +AE ++ ++ G L F V LSGGE+ LL
Sbjct: 398 KTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLL 450
|
Length = 635 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 210 bits (536), Expect = 3e-60
Identities = 145/446 (32%), Positives = 233/446 (52%), Gaps = 24/446 (5%)
Query: 108 KGVTVLKD-VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFL 166
+GV VL D T + G+KVGLVG NG GK+T L ++ + D G+ N ++A++
Sbjct: 11 RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY-TFPGNWQLAWV 69
Query: 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK 226
+QE ++ + E + +E +++ L A + D G + + K
Sbjct: 70 NQE-TPALPQPALEYVIDGDRE-------YRQLEAQLHDANERND--GHAIA---TIHGK 116
Query: 227 AQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP 286
A++ T+ ++ + L+ LGF+ + +R V+ FS GW+MR++L + L+ DLLLLDEP
Sbjct: 117 LDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEP 176
Query: 287 TNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346
TNHLDLD + WLE +L +++ISHDR FLD + KI+ E Y GNYS + +
Sbjct: 177 TNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEV 236
Query: 347 EKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQ--EEEQIEK 403
++A + Q A +E QQ + + I+R A A + A S K LER++ ++
Sbjct: 237 QRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDN 296
Query: 404 PFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGK 463
PF R PE + ++ ++ + GY DR++ + L + G + ++G NG GK
Sbjct: 297 PF---HFSFRAPESLPN--PLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGK 351
Query: 464 STLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523
STL+KL+ G P GE+ L + L YF Q+Q E L D++ L+ +A A +
Sbjct: 352 STLIKLLAGELAPVSGEIGLAKGIKL-GYFAQHQLEFLRADESPLQHLARLAPQELEQKL 410
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEK 549
+ LG F+ D + + SGGEK
Sbjct: 411 RDYLGGFGFQGDKVTEETRRFSGGEK 436
|
Length = 638 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 6e-52
Identities = 139/485 (28%), Positives = 230/485 (47%), Gaps = 31/485 (6%)
Query: 82 YSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLR 141
Y N N G +I + +EN S S G ++ D + + G GLVG NG GKTT LR
Sbjct: 163 YVNHDGNGGGPAIKD-IHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLR 221
Query: 142 IIAGQEEPDSGNVIKAKSNMKIAFLSQEF--------------EVSMSRTVREEF-MSAF 186
+A + N +I + QE ++ ++ + EE + A
Sbjct: 222 YMAMHA------IDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQ 275
Query: 187 KEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246
+ E+E + + + A + VD D + + L+E + ++ + ++ T +A+ + ++ L
Sbjct: 276 QRELEFETETGKGKGANKDGVDK-DAVSQRLEE---IYKRLELIDAYTAEARAASILAGL 331
Query: 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQD 306
FT + + +FS GW+MR++L + L +PDLLLLDEPTNHLDL + WLE YL K
Sbjct: 332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWP 391
Query: 307 VPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREI 366
+++SH R FL+ + T I+ TY+G+Y + + +++Q A+E +R
Sbjct: 392 KTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSR 451
Query: 367 EQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPE-RGRSGRSVV 425
+ I++ N+ RAS + +++ L ++ K FP R G ++
Sbjct: 452 SHMQAFIDKF--RYNAKRASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPII 509
Query: 426 TIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + FGY LLF N I+ + A++GPNG GKST+LKLI G +P G V
Sbjct: 510 SFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRS 569
Query: 485 EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLL 544
V F Q+ + LDL L + ++ LG ++ + + L
Sbjct: 570 A-KVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL 628
Query: 545 SGGEK 549
SGG+K
Sbjct: 629 SGGQK 633
|
Length = 718 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 2e-46
Identities = 80/253 (31%), Positives = 130/253 (51%), Gaps = 47/253 (18%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ EN+SK Y G +LKD+++ + +G+++ +VG NGAGK+T L+++AG+ P SG V
Sbjct: 322 LEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV 381
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+ +KI + Q D++D +
Sbjct: 382 GE-TVKIGYFDQHR-------------------------------------DELDPDKTV 403
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
L+E D + +V + GFT +D ++ V S G + R+ L K+LLQ
Sbjct: 404 LEEL-------SEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQ 456
Query: 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336
P+LLLLDEPTNHLD++++E LE L + ++++SHDR FLD++ T+I E V
Sbjct: 457 PPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVEDKV-EE 515
Query: 337 YEGNYSQYVLEKA 349
+EG Y Y+ +K
Sbjct: 516 FEGGYEDYLEQKK 528
|
Length = 530 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 2e-34
Identities = 74/257 (28%), Positives = 128/257 (49%), Gaps = 51/257 (19%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++EN++K + + K++ ++ GE++ ++G NG GKTT LR + G+ EPDSG +K
Sbjct: 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG-TVKW 378
Query: 158 KSNMKIAFLSQ----EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
N I + +Q +FE ++ ++MS +++E E AV +
Sbjct: 379 SENANIGYYAQDHAYDFENDLTLF---DWMSQWRQE-----------GDDEQAVRGT--L 422
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
GRLL F+ DD + V S G + RM GK+
Sbjct: 423 GRLL------------------------------FSQDDIKKSVKVLSGGEKGRMLFGKL 452
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333
++Q P++L++DEPTNH+D+++IE L L K + ++ +SHDR F+ L T+I+E
Sbjct: 453 MMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDG 512
Query: 334 SRTYEGNYSQYVLEKAA 350
+ G Y +Y+ +
Sbjct: 513 VVDFSGTYEEYLRSQGI 529
|
Length = 530 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 3e-33
Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 54/244 (22%)
Query: 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+++ N++K Y G T L V++EV+ GE GL+G NGAGKTT L+I+AG +P SG ++
Sbjct: 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV 64
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
AK +I ++ QE + TVR E +E +L + K
Sbjct: 65 LGYDVVKEPAKVRRRIGYVPQEPSLYPELTVR--------ENLEFFARLYGLSKE----- 111
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+ + + LL+ F L D ++ V + S G + R
Sbjct: 112 EAEERIEELLELFGL---------------------------EDKANKKVRTLSGGMKQR 144
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+S+ LL DP+LL+LDEPT+ LD + E L + V +++ +H ++LC
Sbjct: 145 LSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELC 204
Query: 324 TKIV 327
+++
Sbjct: 205 DRVI 208
|
Length = 293 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 3e-31
Identities = 97/498 (19%), Positives = 187/498 (37%), Gaps = 114/498 (22%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD--- 150
+++EN++ + V ++DV++EV+ GE +G+VG +G+GK+T + G
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 151 -SGNVIKAKSNMKIAFLSQEFEVSMSRT--VREEFMSAFKEEMEIAGKLERVQKALESAV 207
SG VI ++ + ++ R + ++ M++ M I ++ +
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS-FSSGWQM 266
+ + +AV +L+ ++G + S G +
Sbjct: 126 RA--------------EARKRAV----------ELLEQVGLPDPERRDRYPHQLSGGMRQ 161
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQL 322
R+ + L P LL+ DEPT LD+ T ++ L+ + + ++ I+HD + +L
Sbjct: 162 RVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAEL 221
Query: 323 CTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS 382
++V V+ K +E+ + T+ L+ +
Sbjct: 222 ADRVV-----------------VMYKGEIVETGPTEEILSNPQHPYTRGLLAAV------ 258
Query: 383 GRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG-RSGRSVVTIKNLEFGYEDR-LLF 440
P + IR P RG +++++NL Y R LF
Sbjct: 259 ---------------------PRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLF 297
Query: 441 NRA----------NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP 490
R + + GE ++G +G GKSTL +++ GL P G ++ ++
Sbjct: 298 VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357
Query: 491 NYFE------------QNQAEALDLDKTVLETVAEA-------AEDWRIDDIKGLLGRCN 531
E Q+ +L+ TV + +AE + R + LL
Sbjct: 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVG 417
Query: 532 FKADMLDRKVSLLSGGEK 549
+ LDR LSGG++
Sbjct: 418 LPPEFLDRYPHELSGGQR 435
|
Length = 539 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 2e-30
Identities = 83/252 (32%), Positives = 129/252 (51%), Gaps = 50/252 (19%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++ EN+SK + ++ D+++++ G VG++G NGAGK+T R+I GQE+PDSG IK
Sbjct: 323 IEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSG-TIKI 381
Query: 158 KSNMKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+K+A++ Q + + ++TV EE I+G L+ +Q + ++ R
Sbjct: 382 GETVKLAYVDQSRDALDPNKTVWEE----------ISGGLDIIQ------LGKREVPSR- 424
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
A V + F D + V S G + R+ L K L
Sbjct: 425 --------------------AYVGRF----NFKGSDQQKKVGQLSGGERNRVHLAKTLKS 460
Query: 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDRAFLDQLCTKIVETEMGVS 334
++LLLDEPTN LD++T+ LE L + V+ISHDR FLD++ T I+ E G S
Sbjct: 461 GGNVLLLDEPTNDLDVETLRALEEAL--LEFAGCAVVISHDRWFLDRIATHILAFE-GDS 517
Query: 335 RT--YEGNYSQY 344
+EGNYS+Y
Sbjct: 518 HVEWFEGNYSEY 529
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-29
Identities = 39/69 (56%), Positives = 55/69 (79%)
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319
S G +MR++L K+LL++P+LLLLDEPTNHLDL++IE LE L + ++++SHDR FL
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFL 130
Query: 320 DQLCTKIVE 328
DQ+ TKI+E
Sbjct: 131 DQVATKIIE 139
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 3e-28
Identities = 68/233 (29%), Positives = 112/233 (48%), Gaps = 39/233 (16%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+K +++K+Y VL D++ VKKGE G +G NGAGKTT ++II G +PDSG
Sbjct: 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG----- 55
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+I F + ++ ++ R + A E L +A +++ L+ RL
Sbjct: 56 ----EITFDGKSYQKNIEALRR---IGALIEAPGFYPNL--------TARENLRLLARL- 99
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
L ++ +++ +G D + V FS G + R+ + LL +
Sbjct: 100 --------------LGIRKKRIDEVLDVVGL-KDSAKKKVKGFSLGMKQRLGIALALLGN 144
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKIV 327
PDLL+LDEPTN LD D I+ L L Q + ++I SH + + ++ +I
Sbjct: 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIG 197
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 4e-27
Identities = 60/243 (24%), Positives = 109/243 (44%), Gaps = 50/243 (20%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++EN++ SY VL+D++ V+KGE L+G NGAGK+T L+ I G +P SG +
Sbjct: 5 IEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIF 64
Query: 156 -----KAKSNMKIAFLSQEFEV--SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
K + ++I ++ Q+ V S TV++ + + G R+ K + VD
Sbjct: 65 GKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKK---GWFRRLNKKDKEKVD 121
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
L+ + + DR + S G + R+
Sbjct: 122 ------EALERVGMEDLR---------------------------DRQIGELSGGQKQRV 148
Query: 269 SLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324
L + L Q+PDLLLLDEP +D + + L+ L ++ +++++HD +
Sbjct: 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE-LRQEGKTVLMVTHDLGLVMAYFD 207
Query: 325 KIV 327
+++
Sbjct: 208 RVI 210
|
Length = 254 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 5e-27
Identities = 83/253 (32%), Positives = 133/253 (52%), Gaps = 52/253 (20%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++ EN+SKS+ ++ D+++ + G VG++G NGAGK+T ++I GQE+PDSG IK
Sbjct: 325 IEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGT-IKI 383
Query: 158 KSNMKIAFLSQEFEVSM--SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+K+A++ Q + ++ ++TV EE I+G L+ ++ V + ++ R
Sbjct: 384 GETVKLAYVDQSRD-ALDPNKTVWEE----------ISGGLDIIK------VGNREIPSR 426
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
A V + F D + V S G + R+ L K L
Sbjct: 427 ---------------------AYVGRF----NFKGGDQQKKVGVLSGGERNRLHLAKTLK 461
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDRAFLDQLCTKIVETEMGV 333
Q ++LLLDEPTN LD++T+ LE L + P V+ISHDR FLD++ T I+ E G
Sbjct: 462 QGGNVLLLDEPTNDLDVETLRALEEAL--LEFPGCAVVISHDRWFLDRIATHILAFE-GD 518
Query: 334 SRT--YEGNYSQY 344
S+ +EGN+ +Y
Sbjct: 519 SQVEWFEGNFQEY 531
|
Length = 556 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 8e-27
Identities = 73/254 (28%), Positives = 112/254 (44%), Gaps = 74/254 (29%)
Query: 99 KLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
+L+N+S SY L D++ +KKGE V +VG NG+GK+T LR++ G P SG V
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 155 ----IKAKSNM----KIAFLSQEFEVSMSR-TVREEFMSAF--------KEEMEIAGKLE 197
+ S K+ + Q + TV EE AF +EE+E E
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEV--AFGLENLGLPEEEIE-----E 113
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
RV++ALE V L+ L DR
Sbjct: 114 RVEEALE------------------------LVGLEGLR-----------------DRSP 132
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIIS 313
+ S G + R+++ +L DPD+LLLDEPT LD + +E L+ L + ++I++
Sbjct: 133 FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKK-LKAEGKTIIIVT 191
Query: 314 HDRAFLDQLCTKIV 327
HD L +L +++
Sbjct: 192 HDLDLLLELADRVI 205
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-25
Identities = 63/240 (26%), Positives = 112/240 (46%), Gaps = 48/240 (20%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--- 155
++E+++ SY G VL+DV++EVK GE + +VG NGAGK+T L+ I G +P SG++
Sbjct: 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60
Query: 156 --KAKSNMKIAFLSQEFEVSMSR--TVREEFMSAFKEEMEIAGKLERVQKAL-ESAVDDM 210
K +I ++ Q + +VR+ + + +L + KA + A++ +
Sbjct: 61 KPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERV 120
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
L +L R + L S G Q R+ L
Sbjct: 121 GL-------SELADR-----QIGEL-------------------------SGGQQQRVLL 143
Query: 271 GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIV 327
+ L+QDPDLLLLDEP +D T E + L + + + +++++HD + + +++
Sbjct: 144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVL 203
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 2e-25
Identities = 65/252 (25%), Positives = 109/252 (43%), Gaps = 66/252 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++EN+S Y G +L D+++ + KGE G++G NG+GK+T L+ +AG +P SG V
Sbjct: 3 LEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLD 62
Query: 155 ---IKAKSNM----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
I + S K+A++ Q TV E V
Sbjct: 63 GKDIASLSPKELAKKLAYVPQSPSAPFGLTVYE-------------------------LV 97
Query: 208 DDMDLMGRL--LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
L+GR L F ++ + V + + LG DR V S G +
Sbjct: 98 ----LLGRYPHLGLFGRPSKEDE--------EIVEEALELLG-LEHLADRPVDELSGGER 144
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAF 318
R+ + + L Q+ +LLLDEPT+HLD L+ + L ++ + +V++ HD
Sbjct: 145 QRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN---REKGLTVVMVLHD--- 198
Query: 319 LDQ---LCTKIV 327
L+ ++
Sbjct: 199 LNLAARYADHLI 210
|
Length = 258 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 8e-25
Identities = 69/255 (27%), Positives = 112/255 (43%), Gaps = 67/255 (26%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+N+SK+Y G V LK V+ ++KGE V +VG +G+GK+T L I+ G + P SG
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 154 VIKAKSNM--------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL--E 197
V +++ I F+ Q F + T E + +AG E
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELP----LLLAGVPKKE 116
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
R ++A E LL+ L R L+ S+L
Sbjct: 117 RRERAEE-----------LLERVGLGDR---------LNHYPSEL--------------- 141
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIIS 313
S G Q R+++ + L DP ++L DEPT +LD +T +E L + +V+++
Sbjct: 142 ---SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVT 198
Query: 314 HDRAFLDQLCTKIVE 328
HD L + +I+E
Sbjct: 199 HDP-ELAEYADRIIE 212
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 4e-24
Identities = 62/232 (26%), Positives = 98/232 (42%), Gaps = 52/232 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++L+ +SK+Y V L D++ V+ GE + L+G +G GKTT LR+IAG E PDSG ++
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60
Query: 158 KSNM--------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
++ I + Q++ + TV E AF ++ K E + E
Sbjct: 61 GRDVTGVPPERRNIGMVFQDYALFPHLTVAENI--AFGLKLRGVPKAEIRARVRELL--- 115
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
L+ LL R S G Q R++
Sbjct: 116 -----ELVGLEGLLNRY------------------------------PHELSGGQQQRVA 140
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRA 317
L + L ++P LLLLDEP + LD E L L + + + ++HD+
Sbjct: 141 LARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE 192
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 99.0 bits (248), Expect = 2e-23
Identities = 67/241 (27%), Positives = 109/241 (45%), Gaps = 40/241 (16%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
++ ++K + G+ L DV++ V+ GE GL+G NGAGKTT +I+G P SG+V
Sbjct: 2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDG 61
Query: 155 --IKAKSNMKIAFLSQEFEVSMSRTVREEF--MSAFKEEMEIAGKLERVQKALESAVDDM 210
I +IA L + RT F F E+ + LE V A ++
Sbjct: 62 EDITGLPPHEIARL------GIGRT----FQIPRLF-PELTV---LENVMVAAQARTGSG 107
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
L+ R E + +A+ + L+ + L AD DR S G Q R+ +
Sbjct: 108 LLLARARREEREARERAEEL-LERV---------GL---ADLADRPAGELSYGQQRRLEI 154
Query: 271 GKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKI 326
+ L DP LLLLDEP L+ + E + L ++ + ++++ HD + L ++
Sbjct: 155 ARALATDPKLLLLDEPAAGLNPEETEELAELIRE-LRERGITVLLVEHDMDVVMSLADRV 213
Query: 327 V 327
Sbjct: 214 T 214
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 3e-23
Identities = 57/205 (27%), Positives = 86/205 (41%), Gaps = 54/205 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++LEN++K Y L V+ + G GL+G NGAGKTT +RI+A P SG +
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59
Query: 155 -IKAKSNM-----KIAFLSQEFEVSMSRTVRE--EFMSAFKEEMEIAGKLERVQKALESA 206
+I +L QEF V + TVRE ++++ K + RV + LE
Sbjct: 60 GQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK-GIPSKEVKARVDEVLE-- 116
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
VNL D + + S S G +
Sbjct: 117 ----------------------LVNL-----------------GDRAKKKIGSLSGGMRR 137
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R+ + + L+ DP +L++DEPT LD
Sbjct: 138 RVGIAQALVGDPSILIVDEPTAGLD 162
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 4e-23
Identities = 62/233 (26%), Positives = 102/233 (43%), Gaps = 68/233 (29%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
++EN+S Y G TVL D++ ++ GE VG++G NGAGK+T L+ +AG +P SG ++
Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
++ S+S E+A K+ V +ALE LL
Sbjct: 61 KDLA----------SLSPK-------------ELARKIAYVPQALE-----------LLG 86
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
L R + L S G + R+ L + L Q+P
Sbjct: 87 LAHLADR-----PFNEL-------------------------SGGERQRVLLARALAQEP 116
Query: 279 DLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
+LLLDEPT+HLD+ + +E L ++ +V++ HD + +++
Sbjct: 117 PILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVI 169
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 7e-23
Identities = 65/247 (26%), Positives = 106/247 (42%), Gaps = 58/247 (23%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ ++L+N+ KS+ VLKDV +++ GE V L+G +G GK+T LR+IAG EEP SG ++
Sbjct: 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 156 --------KAKSNMKIAFLSQEFEV--SMSRTVREEFMSAFKEEMEIAGKLERVQKA-LE 204
IA + Q + + M TV E + KL V KA ++
Sbjct: 62 IDGRDVTDLPPEKRGIAMVFQNYALYPHM--TVY--------ENIAFGLKLRGVPKAEID 111
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
V ++ AK+ L L +R S G
Sbjct: 112 KRVKEV--------------------------AKLLGLEHLL-------NRKPLQLSGGQ 138
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQD----VPMVIISHDRAFLD 320
+ R++L + L++ P + LLDEP ++LD + + K + ++HD+
Sbjct: 139 RQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAM 198
Query: 321 QLCTKIV 327
L +IV
Sbjct: 199 TLADRIV 205
|
Length = 338 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 8e-23
Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 53/250 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ N+ K + L D++ ++K GE V L+G +GAGK+T LRIIAG E PD+G +
Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62
Query: 158 KSNM-----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ K+ F+ Q + + TV + K E + E + E
Sbjct: 63 GRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEE-- 120
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
LL V L+ L DR A S G +
Sbjct: 121 ---------LLRL----------VQLEGL-----------------ADRYPAQLSGGQRQ 144
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD---LDTIE-WLEGYLGKQDVPMVIISHDRAFLDQL 322
R++L + L +P +LLLDEP LD + WL + V V ++HD+ +L
Sbjct: 145 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALEL 204
Query: 323 CTKIVETEMG 332
++V G
Sbjct: 205 ADRVVVLNQG 214
|
Length = 345 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 8e-23
Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 35/234 (14%)
Query: 98 VKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
+++ +++KSY ++DV++E ++GE GL+G NGAGKTT LR+IA PDSG V
Sbjct: 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTI 61
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+ V VR + + E + +L +A +++ RL
Sbjct: 62 DGVDT----------VRDPSFVRRK-IGVLFGERGLYARL--------TARENLKYFARL 102
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
L RK + A++++L L + DR V FS+G + ++++ + L+
Sbjct: 103 NG----LSRK-------EIKARIAELSKRLQL-LEYLDRRVGEFSTGMKQKVAIARALVH 150
Query: 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVII---SHDRAFLDQLCTKIV 327
DP +L+LDEPT+ LD+ T ++ + + SH ++ LC +++
Sbjct: 151 DPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVI 204
|
Length = 245 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 95.2 bits (238), Expect = 9e-23
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 21/124 (16%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
++NL GY R + + +L+IE GE I+GPNG GKSTLLK + GL KP GE+LL
Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 486 HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLS 545
++ +L + + V +A E + A + DR + LS
Sbjct: 61 KDL-------ASLSPKELARKIA-YVPQALELLGL-------------AHLADRPFNELS 99
Query: 546 GGEK 549
GGE+
Sbjct: 100 GGER 103
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 93.3 bits (233), Expect = 1e-22
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++NL Y +LL +LTI G++ ++G NG GKSTLLKLI G +P G V G
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60
Query: 485 EHNVLPNYFEQ 495
V YFEQ
Sbjct: 61 -STVKIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 2e-22
Identities = 69/254 (27%), Positives = 121/254 (47%), Gaps = 61/254 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++++N+SKS+ VLK ++ V+KGE V ++G +G+GK+T LR + G EEPDSG++
Sbjct: 3 IEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVD 62
Query: 155 ---IKAKSNM-----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ K ++ K+ + Q+F + TV E A KL + +A E A
Sbjct: 63 GEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA----PVKVKKLSK-AEAREKA 117
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
++ LL++ L KA A P A S G Q
Sbjct: 118 LE-------LLEKVGLAD-KADA-------------YP-------------AQLSGGQQQ 143
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFL 319
R+++ + L DP ++L DEPT+ LD LD ++ L ++ + M+I++H+ F
Sbjct: 144 RVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMK----DLAEEGMTMIIVTHEMGFA 199
Query: 320 DQLCTKIVETEMGV 333
++ +++ + G
Sbjct: 200 REVADRVIFMDQGK 213
|
Length = 240 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 3e-22
Identities = 50/149 (33%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++NL FGY + + + + +I +GE T I+GPNG GKSTLLK + GL KP+ GEVL
Sbjct: 1 MMLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60
Query: 483 LGEHNV--LPN--------YFEQNQAEALDLDKTVLETVA------------EAAEDWRI 520
L ++ L Y Q+ + L TV E V + ED I
Sbjct: 61 LDGKDIASLSPKELAKKLAYVPQSPSAPFGL--TVYELVLLGRYPHLGLFGRPSKEDEEI 118
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
++ L + DR V LSGGE+
Sbjct: 119 --VEEALELLGL-EHLADRPVDELSGGER 144
|
Length = 258 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 5e-22
Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 53/201 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++ EN+SK Y V+ V+ VK+GE VGL+G NGAGKTT +I G +PDSG +
Sbjct: 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL-ERVQKALES 205
+ ++ + I +L QE + TV E ++ +EI G + ++ LE
Sbjct: 61 GQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAV----LEIRGLSKKEREEKLEE 116
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
LL+EF + + K +S S G +
Sbjct: 117 ----------LLEEFHI--------------THLRK-------------SKASSLSGGER 139
Query: 266 MRMSLGKILLQDPDLLLLDEP 286
R+ + + L +P LLLDEP
Sbjct: 140 RRVEIARALATNPKFLLLDEP 160
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 7e-22
Identities = 66/258 (25%), Positives = 112/258 (43%), Gaps = 64/258 (24%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+N+SK Y V LKDV E++ GE V +VG +G+GK+T L ++ G ++P SG
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 154 VI-----------KAKSNM---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL-ER 198
V+ K + + KI F+ Q F + TV E + IAGK R
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELP----LLIAGKSAGR 117
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
++A E LL+ L R + +
Sbjct: 118 RKRAAEE----------LLEVLGLEDRLL--------------------------KKKPS 141
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISH 314
S G Q R+++ + L+ +P ++L DEPT +LD T +E L ++ +++++H
Sbjct: 142 ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH 201
Query: 315 DRAFLDQLCTKIVETEMG 332
D +++E + G
Sbjct: 202 DPELAKY-ADRVIELKDG 218
|
Length = 226 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 1e-21
Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 35/198 (17%)
Query: 98 VKLENISKSY----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ + ++K + K V + V++ VK GE GL+G NGAGKTT LR++AG EPD+G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
V V+E + + + L +A ++++
Sbjct: 62 A----------------TVDGFDVVKEPA--EARRRLGFVSDSTGLYDRL-TARENLEYF 102
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
L + D L A++ +L LG + DR V FS+G + ++++ +
Sbjct: 103 AGL-----------YGLKGDELTARLEELADRLGM-EELLDRRVGGFSTGMRQKVAIARA 150
Query: 274 LLQDPDLLLLDEPTNHLD 291
L+ DP +LLLDEPT LD
Sbjct: 151 LVHDPPVLLLDEPTTGLD 168
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 91.7 bits (229), Expect = 1e-21
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 9/92 (9%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++ N+SK Y T L D++ V+KGE GL+G NGAGKTT ++II G +PDSG +
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60
Query: 156 -------KAKSNMKIAFLSQEFEVSMSRTVRE 180
+ +I +L +E + + TVRE
Sbjct: 61 GKDIKKEPEEVKRRIGYLPEEPSLYENLTVRE 92
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 3e-21
Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 48/202 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
V+LEN++K + VT L D+ ++ GE V L+G +G GKTT LR+IAG EEP SG +
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60
Query: 158 KSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
++ IA + Q + + TV + AF ++ K E ++ E A
Sbjct: 61 GRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNI--AFGLKLRKVPKDEIDERVREVA--- 115
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
LL LL RK + + S G + R++
Sbjct: 116 -----ELLQIEHLLDRKPKQL------------------------------SGGQRQRVA 140
Query: 270 LGKILLQDPDLLLLDEPTNHLD 291
LG+ ++++P + L+DEP ++LD
Sbjct: 141 LGRAIVREPKVFLMDEPLSNLD 162
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 4e-21
Identities = 64/229 (27%), Positives = 99/229 (43%), Gaps = 53/229 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++E +SKS+ GV VL+D+ V+KGE V ++G +G GK+T LR+IAG E+P SG V
Sbjct: 4 LEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLD 63
Query: 155 --IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL--ERVQKALESAVDDM 210
I ++ QE + TV + +E+ GK E ++A E
Sbjct: 64 GRPVTGPGPDIGYVFQEDALLPWLTVLDNVALG----LELRGKSKAEARERAKE------ 113
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
LL+ L A D+ S G + R+++
Sbjct: 114 -----LLELVGL---------------------------AGFEDKYPHQLSGGMRQRVAI 141
Query: 271 GKILLQDPDLLLLDEPTNHLDLDTIE----WLEGYLGKQDVPMVIISHD 315
+ L P LLLLDEP LD T E L + +++++HD
Sbjct: 142 ARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD 190
|
Length = 248 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 7e-21
Identities = 59/304 (19%), Positives = 114/304 (37%), Gaps = 77/304 (25%)
Query: 63 QSDVESLFSS----------SADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--- 109
E + S+ +A + + G + + N+SK Y
Sbjct: 236 TGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKG 295
Query: 110 --------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI------ 155
V + DV++++++GE +GLVG +G+GK+T RI+AG P SG++I
Sbjct: 296 LFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDL 355
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ + +++ F ++ TV +
Sbjct: 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDI-------------------------- 389
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
L L + + A+V++L+ +G + DR S G + R
Sbjct: 390 ----LAEPLRIHGGGSGAERR--------ARVAELLELVGLPPEFLDRYPHELSGGQRQR 437
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+++ + L +P LL+LDEP + LD + L+ + + + ISHD A + +
Sbjct: 438 VAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIA 497
Query: 324 TKIV 327
++
Sbjct: 498 DRVA 501
|
Length = 539 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 8e-21
Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 45/239 (18%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+++ N++K+YK + D++ V KGE GL+G NGAGKTT L+++ G+ P SG
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
++ + S +F + F +E+ + + + R
Sbjct: 61 INGYSI----RTDRKAARQSLGYCPQFDALF-DEL--------------TVREHLRFYAR 101
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
L + + + +V L+ LG T D ++ + S G + ++SL L+
Sbjct: 102 L-----------KGLPKSEIKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLAIALI 149
Query: 276 QDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
P +LLLDEPT+ LD D I + ++ +++ +H + LC +I
Sbjct: 150 GGPSVLLLDEPTSGLDPASRRAIWDLILEV-----RKGRSIILTTHSMDEAEALCDRIA 203
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 9e-21
Identities = 57/242 (23%), Positives = 113/242 (46%), Gaps = 44/242 (18%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ + N+S Y G L +V+ E+++GE +G+VG +G+GK+T R++AG E+P SG+
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ + + ++ K ++ V + S+++ +
Sbjct: 64 I----------------------LLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTV 101
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
GR+L E + L ++++L+ ++G DR S G + R+++ +
Sbjct: 102 GRILSE------PLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARA 155
Query: 274 LLQDPDLLLLDEPTNHLDLDT--------IEWLEGYLGKQDVPMVIISHDRAFLDQLCTK 325
L+ +P LL+LDEPT+ LD+ +E + + + ISHD A ++ +C +
Sbjct: 156 LIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER----GLTYLFISHDLALVEHMCDR 211
Query: 326 IV 327
I
Sbjct: 212 IA 213
|
Length = 252 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 1e-20
Identities = 50/161 (31%), Positives = 68/161 (42%), Gaps = 37/161 (22%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S++T++NL Y DR L +LT+ GE+ ++G NG GKSTLLK++ G +P GEV
Sbjct: 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61
Query: 483 LGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR-------------IDDIKGLLGR 529
+ Y Q LD +KTVL+ V E + R D LL
Sbjct: 62 R-PKGLRVGYLSQEP--PLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAE 118
Query: 530 CNFKADMLD---------------------RKVSLLSGGEK 549
+ LD R VS LSGG +
Sbjct: 119 LEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWR 159
|
Length = 530 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 87.9 bits (219), Expect = 1e-20
Identities = 33/71 (46%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++LEN+SK+Y G +LKD++ + G+++GLVG NGAGK+T L++IAG+ EPD G +
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGI-VTW 59
Query: 158 KSNMKIAFLSQ 168
S +KI + Q
Sbjct: 60 GSTVKIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 1e-20
Identities = 71/244 (29%), Positives = 111/244 (45%), Gaps = 64/244 (26%)
Query: 100 LENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
+ENIS SYK T +L D++ ++ GE + L G NGAGKTT +I+AG + SG++
Sbjct: 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 155 --IKAKSNMK-IAFLSQE-----FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
IKAK K I ++ Q+ F S VREE + K E+ E+ +
Sbjct: 62 KPIKAKERRKSIGYVMQDVDYQLFTDS----VREELLLGLK---ELDAGNEQAET----- 109
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+L + DL K +R S S G +
Sbjct: 110 ---------VLKDLDLYALK---------------------------ERHPLSLSGGQKQ 133
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
R+++ LL DLL+ DEPT+ LD ++ + L L Q +++I+HD FL ++C
Sbjct: 134 RLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVC 193
Query: 324 TKIV 327
+++
Sbjct: 194 DRVL 197
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 1e-20
Identities = 60/256 (23%), Positives = 110/256 (42%), Gaps = 66/256 (25%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++++N+S S+ V L DV++ +KKGE +GLVG +G+GK+T R I G +P SG+
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 154 VI---KAKSNM----------KIAFLSQEFEVSMS-----RTVREEFMSAFKEEMEIAGK 195
+I K + +I + Q+ MS T+ E E + I GK
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQD---PMSSLNPRMTIGE----QIAEPLRIHGK 114
Query: 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255
L + + E V L+ +G + +R
Sbjct: 115 LSKKEARKE---------------------------------AVLLLLVGVGLPEEVLNR 141
Query: 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVI 311
S G + R+++ + L +P LL+ DEPT+ LD+ ++ L+ + + ++
Sbjct: 142 YPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLF 201
Query: 312 ISHDRAFLDQLCTKIV 327
I+HD + ++ ++
Sbjct: 202 ITHDLGVVAKIADRVA 217
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 2e-20
Identities = 69/238 (28%), Positives = 108/238 (45%), Gaps = 49/238 (20%)
Query: 107 YKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFL 166
LKD+++E+ KGE+VG++G NGAGK+T L++IAG +P SG V K K+A L
Sbjct: 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV---KVTGKVAPL 93
Query: 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK 226
E+ F E+ + +++ L G +L L RK
Sbjct: 94 ---IELGAG----------FDPEL--------------TGRENIYLRGLILG----LTRK 122
Query: 227 AQAVNLDTLDAKVSKLM--PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+D KV +++ ELG D D+ V ++SSG R++ +PD+LLLD
Sbjct: 123 E-------IDEKVDEIIEFAELG---DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLD 172
Query: 285 EPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEG 339
E D E L +++ +V++SHD + Q C + + E G R
Sbjct: 173 EVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230
|
Length = 249 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 2e-20
Identities = 73/253 (28%), Positives = 116/253 (45%), Gaps = 66/253 (26%)
Query: 98 VKLENISKSY-----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
++LEN+SK++ VT L DV+ E+ KGE G++G +GAGK+T LR+I E P SG
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 153 NV------IKAKSNM-------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLE 197
+V + A S KI + Q F + SRTV E +E+AG K E
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP----LELAGVPKAE 117
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
Q+ E LL+ L +D DR
Sbjct: 118 IKQRVAE-----------LLELVGL---------------------------SDKADRYP 139
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIIS 313
A S G + R+++ + L +P +LL DE T+ LD +T +E L+ + + +V+I+
Sbjct: 140 AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLIT 199
Query: 314 HDRAFLDQLCTKI 326
H+ + ++C ++
Sbjct: 200 HEMEVVKRICDRV 212
|
Length = 339 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 3e-20
Identities = 67/251 (26%), Positives = 99/251 (39%), Gaps = 47/251 (18%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
++ +SK + G+T + DV+ EV+ GE VGL+G NGAGKTT +I G +P SG V
Sbjct: 6 EVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRG 65
Query: 155 --IKAKSNMKIAFLS-----QEFEVSMSRTVREEFMSA--FKEEMEIAGKLERVQKALES 205
I +IA L Q + TV E + + R +K
Sbjct: 66 RDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEERE 125
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A + LL+ L + DR + S G Q
Sbjct: 126 A---RERARELLEFVGLGELA---------------------------DRPAGNLSYGQQ 155
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321
R+ + + L P LLLLDEP L+ + E L + + V +++I HD +
Sbjct: 156 RRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMG 215
Query: 322 LCTKIVETEMG 332
L +IV G
Sbjct: 216 LADRIVVLNYG 226
|
Length = 250 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 4e-20
Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 31/235 (13%)
Query: 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
G++L +S S G ++ V G GL+G NG+GK+T LR++AG PD+G V
Sbjct: 1 GLRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL 60
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
A ++ +SR R ++ +++ + A L V D+ +GR
Sbjct: 61 AGVDLH----------GLSRRARARRVALVEQDSDTAVPL---------TVRDVVALGR- 100
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+ R A + A V + + + DR +++ S G + R+ + + L Q
Sbjct: 101 -----IPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHVARALAQ 154
Query: 277 DPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
+P LLLLDEPTNHLD L+T+ + V +V HD C +V
Sbjct: 155 EPKLLLLDEPTNHLDVRAQLETLALVRELAATG-VTVVAALHDLNLAASYCDHVV 208
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 5e-20
Identities = 66/247 (26%), Positives = 102/247 (41%), Gaps = 56/247 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++L ISKS+ GV L V+ V+ GE L+G NGAGK+T ++I++G PDSG +
Sbjct: 9 LELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILID 68
Query: 155 ---IKAKSNMK-----IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ S IA + QE + + +V E
Sbjct: 69 GKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIF----------------------- 105
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+GR R+ ++ + + +L+ LG D D LV S Q
Sbjct: 106 ------LGR------EPTRRFGLIDRKAMRRRARELLARLGLD-IDPDTLVGDLSIA-QR 151
Query: 267 RM-SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISH--DRAFLD 320
+M + + L D +L+LDEPT L + E L L Q V ++ ISH D F
Sbjct: 152 QMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVF-- 209
Query: 321 QLCTKIV 327
++ +I
Sbjct: 210 EIADRIT 216
|
Length = 500 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 5e-20
Identities = 68/247 (27%), Positives = 106/247 (42%), Gaps = 52/247 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++ NISK + L DV EV G V L+G +G+GK+T LRIIAG E+PDSG +
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLN 60
Query: 156 -KAKSNM-----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
+ + + KI F+ Q + + TVR+ IA LE
Sbjct: 61 GQDATRVHARDRKIGFVFQHYALFKHLTVRD----------NIAFGLE------------ 98
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ + + A+V +L+ + GDR S G + R++
Sbjct: 99 ------------IRKHPKAKIK-----ARVEELLELVQLEG-LGDRYPNQLSGGQRQRVA 140
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIE----WLEGYLGKQDVPMVIISHDRAFLDQLCTK 325
L + L +P +LLLDEP LD + WL + V V ++HD+ ++ +
Sbjct: 141 LARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADR 200
Query: 326 IVETEMG 332
IV G
Sbjct: 201 IVVMSNG 207
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 5e-20
Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 55/232 (23%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+++ N+SK+Y G VT L+D++ V++GE V LVG +G GK+T LRIIAG E P SG
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 154 VI-----KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
V+ ++ Q+ + TV + A E++ K E ++A E
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNV--ALGLELQGVPKAEARERAEE---- 114
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP-ELGFTADDGDRLVASFSSGWQMR 267
LL+ L + P +L S G + R
Sbjct: 115 -------LLELVGL--------------SGFENAYPHQL--------------SGGMRQR 139
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHD 315
++L + L DPD+LLLDEP + LD E L + +++++HD
Sbjct: 140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHD 191
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 6e-20
Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 33/223 (14%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L+N+S G +L D++W+V GE +VG NGAGKTT L ++ G+ P SG+V
Sbjct: 34 LKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVT---- 89
Query: 160 NMKIAFLSQEF-EVSMSRTVREE--FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
L + F + +R+ +S E+ + + + L G
Sbjct: 90 -----LLGRRFGKGETIFELRKRIGLVS-----SELHERFRVRETVRDVV-----LSG-F 133
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+ Q A +L L+ LG DR S S G Q R+ + + L++
Sbjct: 134 FASIGIYQEDLTAEDLA----AAQWLLELLGAKHLA-DRPFGSLSQGEQRRVLIARALVK 188
Query: 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVP-----MVIISH 314
DP+LL+LDEP LDL E L L + ++ ++H
Sbjct: 189 DPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTH 231
|
Length = 257 |
| >gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 6e-20
Identities = 40/89 (44%), Positives = 59/89 (66%), Gaps = 5/89 (5%)
Query: 327 VETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN-SGRA 385
+E E G TY+GNYSQY+ +K +E Q A+EKQQ+EI++ ++ I+R A A+ + +A
Sbjct: 1 LELENGKLTTYKGNYSQYLEQKEERLEQQEKAYEKQQKEIKKLEEFIDRFRAKASKAKQA 60
Query: 386 SSAEKKLERLQEEEQIEKPFQRKQMKIRF 414
S K LE++ E+IEKP K+ KIRF
Sbjct: 61 QSRIKALEKM---ERIEKP-VEKKPKIRF 85
|
This domain is related to pfam00005. Length = 85 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 9e-20
Identities = 58/230 (25%), Positives = 106/230 (46%), Gaps = 35/230 (15%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
EN+ K Y ++ V++ V++GE GL+G NGAGKTT ++++ +P SG A +
Sbjct: 4 ENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHD 63
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEF 220
+ V R VR + I + V L + +++ + RL
Sbjct: 64 V----------VREPREVRRR--------IGIVFQDLSVDDEL-TGWENLYIHARL---- 100
Query: 221 DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
V ++ +L+ +G + DRLV ++S G + R+ + + L+ P++
Sbjct: 101 -------YGVPGAERRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLEIARSLVHRPEV 152
Query: 281 LLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKI 326
L LDEPT LD T E++E + + +++ +H +QLC ++
Sbjct: 153 LFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRV 202
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 1e-19
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 22/145 (15%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ ++NL Y +R + +L++E+GE TA+IGPNG GKSTLLK I+GL KP GE+ +
Sbjct: 4 MIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63
Query: 484 GEHNVLPN-------YFEQNQAEALDLDKTVLETVA------------EAAEDWRIDDIK 524
V Y Q + TV + V +D +
Sbjct: 64 FGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK--VD 121
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEK 549
L R + D+ DR++ LSGG+K
Sbjct: 122 EALERVGME-DLRDRQIGELSGGQK 145
|
Length = 254 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 1e-19
Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 25/143 (17%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +K L Y + +LT+E GE A++GP+GCGK+TLL+LI GLE+P GE+L+
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60
Query: 485 EHNV--LPNY-------FEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGL 526
+V +P F+ AL TV E +A +A R+ ++ L
Sbjct: 61 GRDVTGVPPERRNIGMVFQDY---ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLEL 117
Query: 527 LGRCNFKADMLDRKVSLLSGGEK 549
+G +L+R LSGG++
Sbjct: 118 VGL----EGLLNRYPHELSGGQQ 136
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 1e-19
Identities = 59/199 (29%), Positives = 86/199 (43%), Gaps = 49/199 (24%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
EN++KSYK V+ DV+ EV GE VGL+G NGAGKTT +I G PDSG +
Sbjct: 6 VAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDD 65
Query: 155 -------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ ++ + I +L QE + TV + M+ LE +K L+ A
Sbjct: 66 EDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAV----------LEIREKDLKKAE 115
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+L LL+EF + + D S S G + R
Sbjct: 116 RKEEL-DALLEEFHITHLR---------------------------DSKAYSLSGGERRR 147
Query: 268 MSLGKILLQDPDLLLLDEP 286
+ + + L +P +LLDEP
Sbjct: 148 VEIARALAANPKFILLDEP 166
|
Length = 243 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 1e-19
Identities = 67/256 (26%), Positives = 110/256 (42%), Gaps = 69/256 (26%)
Query: 98 VKLENISKSY----------------------KGVTVLKDVTWEVKKGEKVGLVGVNGAG 135
++LEN+SKSY LKDV++EV +GE++GL+G NGAG
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60
Query: 136 KTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195
K+T LR++AG PDSG V +++ L F E+
Sbjct: 61 KSTLLRLLAGIYPPDSGTV---TVRGRVSSLL-------------GLGGGFNPEL----- 99
Query: 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255
+ +++ L GRLL L +++ + ++ ELG D D
Sbjct: 100 ---------TGRENIYLNGRLL---GLSRKEIDEKIDEIIE------FSELG---DFIDL 138
Query: 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPT----NHLDLDTIEWLEGYLGKQDVPMVI 311
V ++SSG + R++ +PD+LL+DE L L KQ +++
Sbjct: 139 PVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRE-LLKQGKTVIL 197
Query: 312 ISHDRAFLDQLCTKIV 327
+SHD + + +LC + +
Sbjct: 198 VSHDPSSIKRLCDRAL 213
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 2e-19
Identities = 65/241 (26%), Positives = 109/241 (45%), Gaps = 71/241 (29%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++ N+SKS+ T + D++ ++KKGE V L+G +G GKTT LR+IAG E+P SG ++
Sbjct: 6 LEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLD 65
Query: 156 -KAKSNMKIAFLSQEFEVSM---------SRTVRE------EFMSAFKEEMEIAGKLERV 199
+ +++ ++ + M TV E + K+ EI RV
Sbjct: 66 GEDITDVPP----EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKA-EIK---ARV 117
Query: 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
++ALE L+G L+ F D K +L
Sbjct: 118 EEALE-------LVG--LEGF--------------ADRKPHQL----------------- 137
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHD 315
S G Q R++L + L+ +P +LLLDEP + LD + L+ + + V ++HD
Sbjct: 138 -SGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHD 196
Query: 316 R 316
+
Sbjct: 197 Q 197
|
Length = 352 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 2e-19
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 34/225 (15%)
Query: 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIA 164
K Y + V ++V++GE G +G NGAGKTT +R++ P SG A ++
Sbjct: 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV--- 57
Query: 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224
V R VR I + V + L + +++++MGRL L
Sbjct: 58 -------VREPRKVRRSIG--------IVPQYASVDEDL-TGRENLEMMGRLYG----LP 97
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+ + + +L+ + DR V ++S G + R+ + L+ PD+L LD
Sbjct: 98 KDE-------AEERAEELLELFELG-EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLD 149
Query: 285 EPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKI 326
EPT LD T + Y L ++ V +++ +H D+LC +I
Sbjct: 150 EPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRI 194
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 3e-19
Identities = 55/205 (26%), Positives = 85/205 (41%), Gaps = 48/205 (23%)
Query: 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+++ I+K + GV DV+ VKKGE L+G NGAGK+T ++I+ G +PDSG +
Sbjct: 4 ALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRV 63
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ + I + Q F + + TV E +
Sbjct: 64 DGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENII---------------------- 101
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
+G + L+ R+ A++ +L G D D VA S G Q
Sbjct: 102 -------LGLEPSKGGLIDRRQAR-------ARIKELSERYGLPVDP-DAKVADLSVGEQ 146
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHL 290
R+ + K L + LL+LDEPT L
Sbjct: 147 QRVEILKALYRGARLLILDEPTAVL 171
|
Length = 501 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 3e-19
Identities = 63/237 (26%), Positives = 110/237 (46%), Gaps = 37/237 (15%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ EN+S Y LKDV+ E++KGE+V L+G NG+GK+T L+++ G +P SG V+
Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL- 62
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
V S+ K +E+ K+ V DD +
Sbjct: 63 ---------------------VDGLDTSSEKSLLELRQKVGLVF----QNPDDQLFGPTV 97
Query: 217 LDE--FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274
DE F L + + ++ +V++ + +G + DR + S G + R+++ +L
Sbjct: 98 EDEVAFGLENL---GLPREEIEERVAEALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVL 153
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPM--VIISHDRAFLDQLCTKIV 327
P++LLLDEPT LD L L K ++ +I++HD + + ++V
Sbjct: 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVV 210
|
Length = 235 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 3e-19
Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 62/249 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
++++N+ KS+ VLK + VKKGE V ++G +G+GK+T LR I EEPDSG +I
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60
Query: 156 -----KAKSNM-----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
K N+ K+ + Q+F + TV E A +V+
Sbjct: 61 GLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLA----------PIKVKG---- 106
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
KA+A + + +L+ ++G AD D A S G Q
Sbjct: 107 ------------------MSKAEA------EERALELLEKVGL-ADKADAYPAQLSGGQQ 141
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAF 318
R+++ + L +P ++L DEPT+ LD LD ++ L ++ + MV+++H+ F
Sbjct: 142 QRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK----DLAEEGMTMVVVTHEMGF 197
Query: 319 LDQLCTKIV 327
++ +++
Sbjct: 198 AREVADRVI 206
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 4e-19
Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 29/147 (19%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ + +KN+ + + NL IE GE ++GP+GCGKSTLL++I GLE+P GE+L
Sbjct: 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 483 LGEHNV--LP-----------NY-------FEQNQAEALDLDKTVLETVAEAAEDWRIDD 522
+ +V LP NY +N A L L V +A D R+ +
Sbjct: 62 IDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG-----VPKAEIDKRVKE 116
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEK 549
+ LLG +L+RK LSGG++
Sbjct: 117 VAKLLG----LEHLLNRKPLQLSGGQR 139
|
Length = 338 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 4e-19
Identities = 69/252 (27%), Positives = 112/252 (44%), Gaps = 65/252 (25%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+N+SK + VT LKDV+ V KGE G++G +GAGK+T +R I G E P SG+
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 154 VIKAKSNM-------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLER 198
V+ +++ +I + Q F + SRTV E +EIAG K E
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP----LEIAGVPKAEI 117
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
++ LE LL+ L D D A
Sbjct: 118 EERVLE-----------LLELVGL---------------------------EDKADAYPA 139
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISH 314
S G + R+ + + L +P +LL DE T+ LD +T + L + + +V+I+H
Sbjct: 140 QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITH 199
Query: 315 DRAFLDQLCTKI 326
+ + ++C ++
Sbjct: 200 EMEVVKRICDRV 211
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 6e-19
Identities = 60/247 (24%), Positives = 107/247 (43%), Gaps = 60/247 (24%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---- 155
L+NISK + +L D+ ++KG+ ++G +G+GK+T L II E+ DSG V
Sbjct: 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQ 60
Query: 156 -------KAKSNM---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
K S K+ +L Q F + + TV +E +++ K +++ K
Sbjct: 61 ETPPLNSKKASKFRREKLGYLFQNFALIENETV--------EENLDLGLKYKKLSK---- 108
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
+ + L++ L + Q K+ +L S G Q
Sbjct: 109 -KEKREKKKEALEKVGLNLKLKQ---------KIYEL------------------SGGEQ 140
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQ 321
R++L + +L+ P L+L DEPT LD ++ L L + ++I++HD Q
Sbjct: 141 QRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE-LNDEGKTIIIVTHDPEVAKQ 199
Query: 322 LCTKIVE 328
+++E
Sbjct: 200 -ADRVIE 205
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 83.6 bits (208), Expect = 7e-19
Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 425 VTIKNLEFGYEDRL--LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ KN+ F Y R + +LTI+ GEK AI+GP+G GKSTLLKL++ L P GE+L
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 483 LGEHNV 488
+ ++
Sbjct: 61 IDGVDL 66
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 9e-19
Identities = 47/141 (33%), Positives = 67/141 (47%), Gaps = 20/141 (14%)
Query: 427 IKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+KNL F Y D R + +LTI++GE I+GPNG GKSTLL+L+ GL P GEVL+
Sbjct: 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVD 61
Query: 485 EHNVLPNYFE----------QNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLG 528
++ + QN + TV E VA E + + ++ L
Sbjct: 62 GKDLTKLSLKELRRKVGLVFQN-PDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALE 120
Query: 529 RCNFKADMLDRKVSLLSGGEK 549
+ + DR LSGG+K
Sbjct: 121 LVGLE-GLRDRSPFTLSGGQK 140
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 1e-18
Identities = 29/63 (46%), Positives = 41/63 (65%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
I+NL F Y R + +LT++ GE A++GPNG GKSTLL+ I GL KP GE+L+
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60
Query: 486 HNV 488
++
Sbjct: 61 KDI 63
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 2e-18
Identities = 61/233 (26%), Positives = 102/233 (43%), Gaps = 52/233 (22%)
Query: 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+++ N+SK + L DV+ ++ GE V L+G +G+GKTT LR+IAG E PDSG ++
Sbjct: 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF 61
Query: 156 --KAKSNMK-----IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
+ +++ + F+ Q + + TV + AF +
Sbjct: 62 GGEDATDVPVQERNVGFVFQHYALFRHMTVFDNV--AFGLRV------------------ 101
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG--DRLVASFSSGWQM 266
+ +++ + AKV +L L D DR A S G +
Sbjct: 102 ---------------KPRSERPPEAEIRAKVHEL---LKLVQLDWLADRYPAQLSGGQRQ 143
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHD 315
R++L + L +P +LLLDEP LD + L +L + V V ++HD
Sbjct: 144 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD 196
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 2e-18
Identities = 61/247 (24%), Positives = 105/247 (42%), Gaps = 55/247 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++ ++KS+ +L V +V +GE + ++G +G+GK+T LR+I G PD G +
Sbjct: 9 IEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILID 68
Query: 155 ---IKAKSN-------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
I S ++ L Q+ + S TV E +E KL E
Sbjct: 69 GEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE----HTKLP------E 118
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
S + ++ LM K + V L A L P + S G
Sbjct: 119 SLIRELVLM------------KLELVGLRGAAA---DLYP-------------SELSGGM 150
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQ-DVPMVIISHDRAFLD 320
+ R++L + + DP+LL LDEPT+ LD I+ L L + +++++HD L
Sbjct: 151 RKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLL 210
Query: 321 QLCTKIV 327
+ ++
Sbjct: 211 TIADRVA 217
|
Length = 263 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 3e-18
Identities = 60/214 (28%), Positives = 92/214 (42%), Gaps = 60/214 (28%)
Query: 99 KLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
++EN+SK+Y G LKDV+ + GE V L+G +GAGK+T LR + G EP SG+V+
Sbjct: 2 EVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLID 61
Query: 156 ---------KAKSNM--KIAFLSQEFEVSMSRTVREE-------FMSAFKEEMEIAGKLE 197
KA + +I + Q+F + +V E S ++ + K E
Sbjct: 62 GTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE 121
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
+ Q+AL L+ L LD + +L
Sbjct: 122 K-QRALA-----------ALERVGL---------LDKAYQRADQL--------------- 145
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G Q R+++ + L+Q P L+L DEP LD
Sbjct: 146 ---SGGQQQRVAIARALMQQPKLILADEPVASLD 176
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 3e-18
Identities = 61/249 (24%), Positives = 118/249 (47%), Gaps = 49/249 (19%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++EN++K + VT L D+++ V+KGE GL+G NGAGKTT +R+I G PDSG V+
Sbjct: 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFD 60
Query: 158 KSNM------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
+ +I +L +E + V ++ + +L+ ++K E A +D
Sbjct: 61 GKPLDIAARNRIGYLPEERGLYPKMKVIDQLV--------YLAQLKGLKK--EEARRRID 110
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
L+ +L + + +V +L S G Q ++
Sbjct: 111 ---EWLERLELSEYA---------NKRVEEL------------------SKGNQQKVQFI 140
Query: 272 KILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVE 328
++ DP+LL+LDEP + LD ++ ++ + L + +++ +H +++LC +++
Sbjct: 141 AAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLL 200
Query: 329 TEMGVSRTY 337
G + Y
Sbjct: 201 LNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 7e-18
Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 55/246 (22%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++ N+S SY + L +V+ ++ GEKV ++G G+GK+T L+++AG +P SG+V+
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 156 KAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
++++ I ++ Q+ + T+R+ ER+ +A E
Sbjct: 63 LDGTDIRQLDPADLRRNIGYVPQDVTL-FYGTLRDNITLGAPL-----ADDERILRAAEL 116
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A D + + + DL ++G + G L S G +
Sbjct: 117 AGVT-DFVNKHPNGLDL----------------------QIG---ERGRGL----SGGQR 146
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQ 321
++L + LL DP +LLLDEPT+ +D+++ E L LG D ++II+H + LD
Sbjct: 147 QAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLLD- 203
Query: 322 LCTKIV 327
L +I+
Sbjct: 204 LVDRII 209
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 8e-18
Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 25/151 (16%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +KNL + +A + +I++GE ++G +G GKSTL + I+GL KP G
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 480 EVLLGEHNVLPN-------------YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGL 526
++ ++L Q+ +L+ T+ E +AE K
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEA 120
Query: 527 LGRCNFK--------ADMLDRKVSLLSGGEK 549
++L+R LSGG++
Sbjct: 121 RKEAVLLLLVGVGLPEEVLNRYPHELSGGQR 151
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 1e-17
Identities = 47/150 (31%), Positives = 66/150 (44%), Gaps = 26/150 (17%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +KN+ Y A NL IE GE AI+GP+G GKSTLL L+ GL+KP G
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 480 EVLLGEHNVLPNYFEQNQAEALDLDK--------------TVLETVAEAAE------DWR 519
EVL+ ++ + + L K TVLE V R
Sbjct: 61 EVLINGKDL--TKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+ LL + +L +K S LSGG++
Sbjct: 119 KRAAEELLEVLGLEDRLLKKKPSELSGGQQ 148
|
Length = 226 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 1e-17
Identities = 69/253 (27%), Positives = 115/253 (45%), Gaps = 59/253 (23%)
Query: 98 VKLENISKSYKGVTV-LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ EN+SK+Y G L+DV++ + KGE V L G +GAGK+T L++I G+E P G ++
Sbjct: 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV 61
Query: 157 AK---SNMK---IAFLS-------QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL 203
S +K I FL Q+F + RTV E A + + GK R +
Sbjct: 62 NGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENV--ALP--LRVIGKPPREIRRR 117
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
S V +DL+G L K L +L S G
Sbjct: 118 VSEV--LDLVG--------------------LKHKARALPSQL--------------SGG 141
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFL 319
Q R+++ + ++ P +LL DEPT +LD D + E + + +++ +HD +
Sbjct: 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE-INRLGTTVLMATHDLELV 200
Query: 320 DQLCTKIVETEMG 332
+++ +++ E G
Sbjct: 201 NRMRHRVLALEDG 213
|
Length = 223 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 1e-17
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +KN+ Y + + N +L IE GE A++GP+G GKSTLL+ I GLE+P G +L+
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-17
Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 60/215 (27%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
++++N+SK+Y G LKDV E+ +GE V ++G +GAGK+T LR + G +P SG ++
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILF 63
Query: 156 ----------KAKSNM--KIAFLSQEFEVSMSRTV-------REEFMSAFKEEMEIAGKL 196
K + I + Q+F + +V R + S ++ + K
Sbjct: 64 NGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE 123
Query: 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256
++ +AL++ L+ + LD + S L
Sbjct: 124 DK-AQALDA-----------LERVGI---------LDKAYQRASTL-------------- 148
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G Q R+++ + L+Q P ++L DEP LD
Sbjct: 149 ----SGGQQQRVAIARALVQQPKIILADEPVASLD 179
|
Length = 258 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 3e-17
Identities = 83/319 (26%), Positives = 139/319 (43%), Gaps = 65/319 (20%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+K+E +S Y +L + + G ++GL+G NGAGK+T ++++AG+ P SG + A
Sbjct: 313 LKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLA 372
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
K +K+ + +Q + EF+ +A ES + + RL
Sbjct: 373 KG-IKLGYFAQH---------QLEFL-----------------RADESPLQHL---ARLA 402
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
+ L+ K+ + GF D FS G + R+ L I+ Q
Sbjct: 403 PQ--------------ELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQR 448
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY 337
P+LLLLDEPTNHLDLD + L L + +V++SHDR L + G +
Sbjct: 449 PNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPF 508
Query: 338 EGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLE---R 394
+G+ Y W+ +KQ+ + ++ ANS +A +K+ E R
Sbjct: 509 DGDLEDY----QQWLSDV----QKQENQTDEAPK-----ENNANSAQARKDQKRREAELR 555
Query: 395 LQEE---EQIEKPFQRKQM 410
Q + ++I + K+M
Sbjct: 556 TQTQPLRKEIAR--LEKEM 572
|
Length = 638 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 3e-17
Identities = 59/254 (23%), Positives = 107/254 (42%), Gaps = 61/254 (24%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ N++K+Y G L + + GE V LVG +GAGK+T L++I +E P SG +
Sbjct: 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60
Query: 157 AKSNM-------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER-VQKA 202
++ KI + Q+F + R V E A +E+ G R ++K
Sbjct: 61 NGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFA----LEVTGVPPREIRKR 116
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
+ +A++ + L + L A S
Sbjct: 117 VPAALELVGLSHKH-------------------------------------RALPAELSG 139
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAF 318
G Q R+++ + ++ P +L+ DEPT +LD DT + L+ + K +V+ +H +
Sbjct: 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKK-INKAGTTVVVATHAKEL 198
Query: 319 LDQLCTKIVETEMG 332
+D +++ E G
Sbjct: 199 VDTTRHRVIALERG 212
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 4e-17
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 30/145 (20%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGE 485
+++L Y + + ++ GE AI+GPNG GKSTLLK I+GL KP G + + G+
Sbjct: 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK 61
Query: 486 HNVLPN----YFEQNQAEALDLDK----TVLETVAEA------------AEDW-RIDDIK 524
Y Q +D+ +V + V D ++D+
Sbjct: 62 PLEKERKRIGYVPQR----RSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEAL 117
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEK 549
+G +++ DR++ LSGG++
Sbjct: 118 ERVGL----SELADRQIGELSGGQQ 138
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 4e-17
Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 26/149 (17%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+ + I+N+ + D + +L I++GE ++GP+GCGK+TLL++I G E+P G
Sbjct: 1 MPKPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 480 EVLLGEHNV--LPNY-------FEQNQAEALDLDKTVLETVA----------EAAEDWRI 520
E+LL ++ +P F Q+ AL TV E VA +A R+
Sbjct: 61 EILLDGEDITDVPPEKRPIGMVF---QSYALFPHMTVEENVAFGLKVRKKLKKAEIKARV 117
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
++ L+G DRK LSGG++
Sbjct: 118 EEALELVG----LEGFADRKPHQLSGGQQ 142
|
Length = 352 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 5e-17
Identities = 67/270 (24%), Positives = 107/270 (39%), Gaps = 56/270 (20%)
Query: 60 AKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSY-KGVTVLKDVTW 118
+A +D S + + A+ + LEN+S Y G L D+
Sbjct: 287 GEAAADKLFTLLES----PVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNL 342
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG----------NVIKAKSNMKIAFLSQ 168
+K G+ LVG +GAGK+T L ++ G P G ++ +I+++SQ
Sbjct: 343 TIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ 402
Query: 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228
+ T+RE + A E + AL+ A LL+
Sbjct: 403 N-PYLFAGTIRENILLA-----RPDASDEEIIAALDQA--------GLLEFVPKPDG--- 445
Query: 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM-RMSLGKILLQDPDLLLLDEPT 287
LDT +G + G L SG Q R++L + LL LLLLDEPT
Sbjct: 446 ---LDT----------VIG---EGGAGL-----SGGQAQRLALARALLSPASLLLLDEPT 484
Query: 288 NHLDLDTIEWLEGYLGK--QDVPMVIISHD 315
HLD +T + + L + + +++I+H
Sbjct: 485 AHLDAETEQIILQALQELAKQKTVLVITHR 514
|
Length = 559 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 80.2 bits (199), Expect = 5e-17
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 19/141 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++ L + R + +L + RGE AIIGP+G GKSTLL+LI+GL +P GEVL+
Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID 60
Query: 485 EHNVLPNYFEQNQAE-----------ALDLDKTVLETVA------EAAEDWRIDDIKGL- 526
++ + AL TV E VA + I +I
Sbjct: 61 GEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEK 120
Query: 527 LGRCNFKADMLDRKVSLLSGG 547
L + D + LSGG
Sbjct: 121 LEAVGLRGA-EDLYPAELSGG 140
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 79.8 bits (198), Expect = 6e-17
Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 52/200 (26%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--- 155
++EN++ Y +L V+ V +GE V L+G NGAGKTT L+ I G P SG++
Sbjct: 2 EVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDG 61
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
++ I ++ + + TV E + A + + + LE
Sbjct: 62 RDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLG-----AYARRRAKRKARLE--- 113
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
R+ + F L+ + +L + S G Q
Sbjct: 114 -------RVYELFPRLKERR--------------------------KQLAGTLSGGEQQM 140
Query: 268 MSLGKILLQDPDLLLLDEPT 287
+++ + L+ P LLLLDEP+
Sbjct: 141 LAIARALMSRPKLLLLDEPS 160
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 7e-17
Identities = 62/245 (25%), Positives = 103/245 (42%), Gaps = 59/245 (24%)
Query: 65 DVESLFSSSADEFENKKYSNKQSNTGASSISS--------GVKLENISKSYKGVTVLKDV 116
+ + A ++ + + +S + L +SKSY V+ +
Sbjct: 1 LLTRAVAEEAPRRLELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKAVVNGL 60
Query: 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--------KAK-SNMKIAFLS 167
++ V GE GL+G NGAGK+T R+I G PD+G + +A+ + +I +
Sbjct: 61 SFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVP 120
Query: 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ-KALESAVDDMDLMGRLLDEFDLLQRK 226
Q + + TVRE + + G+ + + +E+ + L EF L+ K
Sbjct: 121 QFDNLDLEFTVRENLL--------VFGRYFGMSTREIEAVIPS-------LLEFARLESK 165
Query: 227 AQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP 286
A DA+VS L S G + R++L + L+ DP LL+LDEP
Sbjct: 166 A--------DARVSDL------------------SGGMKRRLTLARALINDPQLLILDEP 199
Query: 287 TNHLD 291
T LD
Sbjct: 200 TTGLD 204
|
Length = 340 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 7e-17
Identities = 24/57 (42%), Positives = 39/57 (68%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++L I+K + GV L V+ V++GE L+G NGAGK+T ++I++G +PDSG +
Sbjct: 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 8e-17
Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 15/140 (10%)
Query: 424 VVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V+ ++NL Y D+ + + +E GE ++GPNG GK+TLLK++ GL KP GE+L
Sbjct: 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 483 LGEHNVLPNYFEQ-------NQAEALDLDKTVLETVAEAA------EDWRIDDIKGLLGR 529
+ ++V+ + Q +L + TV E + A ++ + I+ LL
Sbjct: 64 VLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLEL 123
Query: 530 CNFKADMLDRKVSLLSGGEK 549
+ D ++KV LSGG K
Sbjct: 124 FGLE-DKANKKVRTLSGGMK 142
|
Length = 293 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 8e-17
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 12/95 (12%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++L+N+SK Y TVL DV+ ++ GE V L+G +G+GK+T LR IAG EEPDSG++
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60
Query: 155 ---------IKAKSNMKIAFLSQEFEVSMSRTVRE 180
+I + Q+F + TV E
Sbjct: 61 GEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLE 95
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 9e-17
Identities = 59/211 (27%), Positives = 93/211 (44%), Gaps = 52/211 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG----- 152
++LEN+SK Y G L V+ ++K+GE L+G +G GKTT LR+IAG E P SG
Sbjct: 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60
Query: 153 -----NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
N+ K + F Q + + TV E AF ++ K E ++ E+
Sbjct: 61 GKDITNLPPHKRPVNTVF--QNYALFPHLTVFENI--AFGLRLKKLPKAEIKERVAEA-- 114
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+DL+ L+ + +R + S G Q R
Sbjct: 115 --LDLVQ--LEGY--------------------------------ANRKPSQLSGGQQQR 138
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWL 298
+++ + L+ +P +LLLDEP LDL + +
Sbjct: 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDM 169
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 1e-16
Identities = 50/140 (35%), Positives = 71/140 (50%), Gaps = 16/140 (11%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+++ I+ + + + NL++E+GE AI+GP+GCGKSTLL+LI GLEKP GEV
Sbjct: 1 MALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 482 LLGEHNVL---PNY---FEQNQAEALDLDKTVLETVA------EAAEDWRIDDIKGLLGR 529
LL V P+ F Q +AL TVL+ VA ++ + K LL
Sbjct: 61 LLDGRPVTGPGPDIGYVF---QEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLEL 117
Query: 530 CNFKADMLDRKVSLLSGGEK 549
A D+ LSGG +
Sbjct: 118 VGL-AGFEDKYPHQLSGGMR 136
|
Length = 248 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 1e-16
Identities = 65/245 (26%), Positives = 108/245 (44%), Gaps = 52/245 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++L ++KS+ G TVLK V +V++GE + ++G +G+GK+T LR+I G PDSG V
Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV--- 57
Query: 158 KSNMKIAFLSQEFEVSMSRT----VREEFMSAFKEEMEIAGKLERVQKALESAVDDMD-- 211
+ E +S +R F+ AL D +
Sbjct: 58 -------LIDGEDISGLSEAELYRLRRRMGMLFQ------------SGAL---FDSLTVF 95
Query: 212 --LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ L + L + + + + L+ L+A +G + D A S G + R++
Sbjct: 96 ENVAFPLREHTRLSEEEIREIVLEKLEA--------VGLRGAE-DLYPAELSGGMKKRVA 146
Query: 270 LGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322
L + L DP+LLL DEPT LD D I L+ LG + ++++HD +
Sbjct: 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELG---LTSIMVTHDLDTAFAI 203
Query: 323 CTKIV 327
+I
Sbjct: 204 ADRIA 208
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 1e-16
Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 37/227 (16%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG-----QEEPDSG 152
++L +++ Y LKD++ ++ KGE L+G +G GK+T LR++ PD G
Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG 60
Query: 153 NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL 212
V+ + + + + R V F I + + L
Sbjct: 61 EVLLDGKD---IYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLR----------L 107
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA-SFSSGWQMRMSLG 271
G L E LD +V + + + + DRL A S G Q R+ L
Sbjct: 108 HGIKLKEE--------------LDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLA 153
Query: 272 KILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHD 315
+ L +P++LLLDEPT+ LD IE L L K++ +VI++H+
Sbjct: 154 RALANEPEVLLLDEPTSALDPISTAKIEELIAEL-KKEYTIVIVTHN 199
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 1e-16
Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 40/228 (17%)
Query: 107 YKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA---KSNMKI 163
Y+ V LK +++ ++KGE VG +G NGAGKTT L+I++G +P SG V A +
Sbjct: 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRK 90
Query: 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLL 223
FL + V +T ++ L +D L+ + +DL
Sbjct: 91 KFLRRIGVVFGQKT-------------QLWWDL--------PVIDSFYLLAAI---YDLP 126
Query: 224 QRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLL 283
+ + LD L +++ L L D V S G +MR + LL +P++L L
Sbjct: 127 PARFKK-RLDEL-SELLDLEELL-------DTPVRQLSLGQRMRAEIAAALLHEPEILFL 177
Query: 284 DEPTNHLDLDTIE----WLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
DEPT LD+ E +L+ Y ++ +++ SH ++ L +++
Sbjct: 178 DEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVL 225
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-16
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++EN+S Y G T L +V+ +K GE V LVG NG+GK+T LR IAG +P SG ++
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 2e-16
Identities = 67/252 (26%), Positives = 112/252 (44%), Gaps = 57/252 (22%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ N+SK+Y GV L DV+ ++KGE + L G +GAGKTT L+++ G P G V
Sbjct: 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI 61
Query: 157 AKSNM------KIAFLS-------QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL 203
A ++ ++ L Q+F + RTV E A +E+ GK ER +
Sbjct: 62 AGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENV--ALP--LEVRGKKER---EI 114
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
+ V G L + L + PE S G
Sbjct: 115 QRRV------GAALRQVGLEHKA--------------DAFPE-------------QLSGG 141
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLD 320
Q R+++ + ++ P LLL DEPT +LD D E + L K+ +++ +HD + +D
Sbjct: 142 EQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVD 201
Query: 321 QLCTKIVETEMG 332
++ +++ + G
Sbjct: 202 RVAHRVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 76.3 bits (189), Expect = 3e-16
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++NL Y + + +LT+E+GE ++GPNG GK+TL+K+I+GL KP GE+ +
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60
Query: 485 EHNVLPN 491
++
Sbjct: 61 GKDIKKE 67
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 3e-16
Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 55/202 (27%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--- 155
++EN+S Y + L+ V+ EV++GE V L+G NGAGKTT L+ I G P SG +I
Sbjct: 5 EVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDG 64
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+A+ + IA++ + + TV E + R ++A E
Sbjct: 65 EDITGLPPHERAR--LGIAYVPEGRRIFPRLTVEENL--------LLGAYARRDKEAQER 114
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
++++ ++L P L + ++ + S G Q
Sbjct: 115 DLEEV---------YELF--------------------PRL---KERRNQRAGTLSGGEQ 142
Query: 266 MRMSLGKILLQDPDLLLLDEPT 287
+++ + L+ P LLLLDEP+
Sbjct: 143 QMLAIARALMSRPKLLLLDEPS 164
|
Length = 237 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 4e-16
Identities = 48/145 (33%), Positives = 67/145 (46%), Gaps = 20/145 (13%)
Query: 423 SVVTIKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++ +NL F Y R +L IE+GE+ +IGPNG GKSTLLKL+ GL KP GEV
Sbjct: 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 482 LLGEHNVLPNYFE-----------QNQAEALDLDKTVLETVAEAAEDWRIDD------IK 524
L+ + QN + L TV + VA E+ + +
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQL-FGPTVEDEVAFGLENLGLPREEIEERVA 120
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEK 549
L + ++LDR LSGG+K
Sbjct: 121 EALELVGLE-ELLDRPPFNLSGGQK 144
|
Length = 235 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 4e-16
Identities = 90/408 (22%), Positives = 175/408 (42%), Gaps = 91/408 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVI 155
++++N++K + G VLK++++ +++GE +G++G +GAGK+ + ++ G + EP SG +I
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 156 KAKSNM-KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214
+ K ++ + +V V + EE++ +++++ + + M
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLE--PEEVDFWNLSDKLRRRIRKRIAIM---- 114
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG-DRLVA--------------- 258
LQR DT+ V + + E+G+ + R V
Sbjct: 115 --------LQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIA 166
Query: 259 -SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW----LEGYLGKQDVPMVIIS 313
S G + R+ L + L ++P L L DEPT LD T + LE + + MV+ S
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
Query: 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLI 373
H ++ L K + E G + EG + V A ++E + +++ E+E + +I
Sbjct: 227 HWPEVIEDLSDKAIWLENGEIKE-EGTPDEVV---AVFMEG--VSEVEKECEVEVGEPII 280
Query: 374 NRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFG 433
K+ + ++ + + +RG V + N+
Sbjct: 281 -----------------KVRNV----------SKRYISV---DRG----VVKAVDNVSL- 305
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++ GE I+G +G GK+TL K+I G+ +P GEV
Sbjct: 306 ------------EVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEV 341
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 6e-16
Identities = 61/262 (23%), Positives = 112/262 (42%), Gaps = 56/262 (21%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++L N+S +Y G LK+ + +GEKV ++G +G+GK+T L+++AG +P G++
Sbjct: 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSIT 396
Query: 156 KAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ I+ L+Q + S T+R+ A + + E + AL+
Sbjct: 397 LNGVEIASLDEQALRETISVLTQRVHL-FSGTLRDNLRLANPDASD-----EELWAALQQ 450
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
L L D L+ + + G RL S G +
Sbjct: 451 V----GLEKLLESA------------PDGLNTWLG----------EGGRRL----SGGER 480
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQ 321
R++L + LL D L LLDEPT LD + L + + +++++H L++
Sbjct: 481 RRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLRGLER 538
Query: 322 LCTKIVETEMGVSRTYEGNYSQ 343
+I+ + G EG +++
Sbjct: 539 -MDRIIVLDNG-KIIEEGTHAE 558
|
Length = 573 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 6e-16
Identities = 60/248 (24%), Positives = 106/248 (42%), Gaps = 42/248 (16%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
+ +N+SK + T + +++ V K GL+G NGAGK+T L++I G P SG
Sbjct: 2 ETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSG------ 55
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+I F + + + E + L +A +++
Sbjct: 56 ---EIIFDGHPWTRKDLHKI-----GSLIESPPLYENL--------TARENL-------- 91
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
K L D+++ +++ + T + G + FS G + R+ + LL P
Sbjct: 92 -------KVHTTLLGLPDSRIDEVLNIVDLT-NTGKKKAKQFSLGMKQRLGIAIALLNHP 143
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
LL+LDEPTN LD I+ L + +Q + +++ SH + + QL I GV
Sbjct: 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLG 203
Query: 336 TYEGNYSQ 343
Y+G ++
Sbjct: 204 -YQGKINK 210
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 6e-16
Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 23/150 (15%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +N+ F Y +D + +L I GEK AI+G +G GKSTLLKL++GL KP+ G +L
Sbjct: 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531
Query: 483 LGEHNVLPNYFEQNQ---------AEALDLDKTVLETVAEAAEDWRIDDIKGLL---GRC 530
L ++ N + + ++ E +A + ++I G
Sbjct: 532 LDGVDL--NDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAH 589
Query: 531 NFKADM---LDRKV----SLLSGGEKIILL 553
F ++ D V + LSGG++ L
Sbjct: 590 EFIENLPMGYDTPVGEGGANLSGGQRQRLA 619
|
Length = 709 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 7e-16
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 28/147 (19%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ ++ + + DR++ + +L + RGE AI+G +G GKSTLL+LI+GL +P GE+L+
Sbjct: 8 LIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILI 67
Query: 484 -GEHNVLPNYFEQNQAEALDLDK---------------TVLETVA----EAAE--DWRID 521
GE + + ++ E ++ K TV E VA E + + I
Sbjct: 68 DGE-----DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIR 122
Query: 522 DIKGL-LGRCNFKADMLDRKVSLLSGG 547
++ + L + D S LSGG
Sbjct: 123 ELVLMKLELVGLRGAAADLYPSELSGG 149
|
Length = 263 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 7e-16
Identities = 64/252 (25%), Positives = 105/252 (41%), Gaps = 62/252 (24%)
Query: 95 SSGVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ ++ +S +Y G L+ V++ V GE+V LVG +GAGK+T L ++ G +P G+
Sbjct: 319 APSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGS 378
Query: 154 V---------IKAKSNMK-IAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200
+ A S IA++ Q F ++ E ++
Sbjct: 379 IAVNGVPLADADADSWRDQIAWVPQHPFLFAGTI---------------------AENIR 417
Query: 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK-LMPELGFTADDGDRLVAS 259
A A D ++ + LD A + + L +G + G L
Sbjct: 418 LARPDASDAE------------IREALERAGLDEFVAALPQGLDTPIG---EGGAGL--- 459
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
S G R++L + L+D LLLLDEPT HLD +T +E L + V ++++H
Sbjct: 460 -SGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTV--LLVTHR 516
Query: 316 RAFLDQLCTKIV 327
A L +IV
Sbjct: 517 LALA-ALADRIV 527
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 8e-16
Identities = 65/328 (19%), Positives = 125/328 (38%), Gaps = 79/328 (24%)
Query: 15 FSTLQPRFT-PFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVESLFSSS 73
F+ L F P K R+ + +
Sbjct: 415 FNMLAGYFISPITRLSQLWTDFQQAKVALERL---------------------GDILDTP 453
Query: 74 ADEFENKKYSNKQSNTGASSISSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGV 131
++ +K + + ++ EN+S Y VL+D++ E+ GEKV +VG
Sbjct: 454 PEQEGDKTLIHL------PKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGR 507
Query: 132 NGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK----------IAFLSQEFEVSMSRTVREE 181
+G+GK+T L+++ G +P G ++ ++ + ++ Q+ S ++R E
Sbjct: 508 SGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQD-PFLFSGSIR-E 565
Query: 182 FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241
++ E E + +A + A EF + + DT
Sbjct: 566 NIALGNPEA----TDEEIIEAAQLAG---------AHEF----IENLPMGYDT------- 601
Query: 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY 301
+G A+ S G + R++L + LL P +LLLDE T+ LD +T +
Sbjct: 602 ---PVGEGG-------ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN 651
Query: 302 LGK--QDVPMVIISHDRAFLDQLCTKIV 327
L + Q ++II+H + + + +I+
Sbjct: 652 LLQILQGRTVIIIAHRLSTI-RSADRII 678
|
Length = 709 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 8e-16
Identities = 59/259 (22%), Positives = 115/259 (44%), Gaps = 69/259 (26%)
Query: 92 SSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP 149
+ ++ N+S +Y G L +V+ ++ GEKV ++G G+GK+T L+++ G +P
Sbjct: 458 PRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP 517
Query: 150 DSGNVIKAKSNMK----------IAFLSQE---FEVSMSRTVRE--EFMSAFKEEMEIAG 194
G+V+ +++ I ++ Q+ F T+R+ + + ++
Sbjct: 518 TEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLF----YGTLRDNIALGAPYADD----- 568
Query: 195 KLERVQKALESA-VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253
E + +A E A V + + R D D+ + G
Sbjct: 569 --EEILRAAELAGVT--EFVRRHPDGLDMQ-------------------------IGERG 599
Query: 254 DRLVASFSSGWQMRM-SLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVP 308
L SG Q + +L + LL+DP +LLLDEPT+ +D + + L+ +L +
Sbjct: 600 RSL-----SGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKT-- 652
Query: 309 MVIISHDRAFLDQLCTKIV 327
+V+++H + LD L +I+
Sbjct: 653 LVLVTHRTSLLD-LVDRII 670
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 75.9 bits (188), Expect = 1e-15
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 426 TIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
++NL GY + ++LF +LT+ GE A++G NG GK+TLLK IMGL PR G +
Sbjct: 2 EVENLNAGYGKSQILFG-VSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD 60
Query: 485 EHNV---------------LPNYFEQNQAEALDLDKTVLE-------TVAEAAEDWRIDD 522
++ +P + + + TV E A R++
Sbjct: 61 GRDITGLPPHERARAGIGYVP------EGRRIFPELTVEENLLLGAYARRRAKRKARLER 114
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEK 549
+ L R + + LSGGE+
Sbjct: 115 VYELFPRL---KERRKQLAGTLSGGEQ 138
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 1e-15
Identities = 59/206 (28%), Positives = 88/206 (42%), Gaps = 55/206 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+ N+ K Y V+ +++ V++GE GL+G NGAGKTT LR++ G PD+G++
Sbjct: 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLC 67
Query: 156 -------KAKSNMKIAFLSQEFEVSMSRTVREE---FMSAFKEEMEIAGKLERVQKALES 205
+ ++ + Q + TVRE F F + A V L
Sbjct: 68 GEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG--LSAAAARALVPPLL-- 123
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
EF L+ KA DAKV +L S G +
Sbjct: 124 -------------EFAKLENKA--------DAKVGEL------------------SGGMK 144
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD 291
R++L + L+ DPD+L+LDEPT LD
Sbjct: 145 RRLTLARALVNDPDVLVLDEPTTGLD 170
|
Length = 306 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 2e-15
Identities = 56/217 (25%), Positives = 100/217 (46%), Gaps = 31/217 (14%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSNMKIAFLSQE 169
+LK V VK+GE ++G NG+GK+T I G E G ++ ++
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL------- 71
Query: 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229
E+S R AF+ +EI G L +A++ +R A+
Sbjct: 72 -ELSPDERARAGIFLAFQYPVEIPGV--TNSDFLRAAMNA--------------RRGARG 114
Query: 230 VNLDTLDAKVSKLMPELGFTADDGDRLV-ASFSSGWQMRMSLGKILLQDPDLLLLDEPTN 288
+ + + ++ + LG + +R V FS G + R + ++LL +P L +LDEP +
Sbjct: 115 ILPEFIK-ELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDS 173
Query: 289 HLDLDTIEWL-EG--YLGKQDVPMVIISHDRAFLDQL 322
LD+D ++ + EG L ++ ++II+H + LD +
Sbjct: 174 GLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYI 210
|
Length = 251 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 2e-15
Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 49/243 (20%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
LE +S S+ G L D++ V GE ++G NGAGKTT + +I G+ PD G+V
Sbjct: 4 YLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGG 63
Query: 155 --IKAKSNMKIAFLS-----QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ +IA Q+ V + TV E +E+A ++ A
Sbjct: 64 TDLTGLPEHQIARAGIGRKFQKPTVFENLTVF--------ENLELALPRDKSVFAS---- 111
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
L RL + ++ +++ +G AD+ DRL S G +
Sbjct: 112 ----LFFRL--------SAEEK-------DRIEEVLETIGL-ADEADRLAGLLSHGQKQW 151
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLD----TIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+ +G +L+QDP LLLLDEP + + T E L+ GK V V++ HD F+ +
Sbjct: 152 LEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSV--VVVEHDMEFVRSIA 209
Query: 324 TKI 326
K+
Sbjct: 210 DKV 212
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 3e-15
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 426 TIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
I+N+ F Y+ + + +L + GE A+ G NG GK+TL K++ GL K G +LL
Sbjct: 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60
Query: 485 EHNV 488
+
Sbjct: 61 GKPI 64
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 3e-15
Identities = 59/254 (23%), Positives = 108/254 (42%), Gaps = 52/254 (20%)
Query: 101 ENISKSYKGV---------TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
+S Y TVL +V+ +K GE V L+G +G GK+T R++ G E P
Sbjct: 7 SGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ 66
Query: 152 GNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
GNV ++ + +++ R + AF+ ++++ Q ++ SAV+
Sbjct: 67 GNV---------SWRGE----PLAKLNRAQ-RKAFRRDIQMV-----FQDSI-SAVNPRK 106
Query: 212 LMGRLLDE----FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+ ++ E L + + A+ S+++ + D+ S G R
Sbjct: 107 TVREIIREPLRHLLSLDKAERL-------ARASEMLRAVDLDDSVLDKRPPQLSGGQLQR 159
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+ L + L +P LL+LDE ++LDL I L+ + + I+HD +++ C
Sbjct: 160 VCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFC 219
Query: 324 T--------KIVET 329
+IVET
Sbjct: 220 QRVMVMDNGQIVET 233
|
Length = 268 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 3e-15
Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 60/231 (25%)
Query: 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++S V LEN+S S+ VL DV+ E+K G+ + L+G NGAGK+T +R++ G PD G
Sbjct: 1 MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG- 59
Query: 154 VIKAKSNMKIAFLSQE--FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
VIK ++I ++ Q+ + ++ TV F+ L D
Sbjct: 60 VIKRNGKLRIGYVPQKLYLDTTLPLTV-NRFLR------------------LRPGTKKED 100
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
++ L ++ QA +L +DA + KL S G R+ L
Sbjct: 101 ILPAL--------KRVQAGHL--IDAPMQKL------------------SGGETQRVLLA 132
Query: 272 KILLQDPDLLLLDEPTNHLDL-------DTIEWLEGYLGKQDVPMVIISHD 315
+ LL P LL+LDEPT +D+ D I+ L L ++++SHD
Sbjct: 133 RALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELD---CAVLMVSHD 180
|
Length = 251 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 4e-15
Identities = 65/254 (25%), Positives = 99/254 (38%), Gaps = 62/254 (24%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
+++EN+SK Y G LK++ + GE V ++G +GAGK+T LR I EP SG+++
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61
Query: 157 A-------------KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEME-IAGKL-----E 197
K +I + Q + + TV E + L E
Sbjct: 62 EGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEE 121
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
++AL L+ L + Q D L
Sbjct: 122 DKERALS-----------ALERVGLADKAYQRA--DQL---------------------- 146
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIIS- 313
S G Q R+++ + L Q PDL+L DEP LD T + + YL K+D VII+
Sbjct: 147 ---SGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINL 203
Query: 314 HDRAFLDQLCTKIV 327
H + +IV
Sbjct: 204 HQVDLAKKYADRIV 217
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 6e-15
Identities = 53/236 (22%), Positives = 100/236 (42%), Gaps = 48/236 (20%)
Query: 103 ISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK 162
+ + + ++D+++E+ KGE VG +G NGAGK+T L+++ G P SG V + N K
Sbjct: 30 FHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV---RVNGK 86
Query: 163 IAFLSQEFEVSMSRTV-----REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
F +E + V + + + +E+ + + + +D + +L
Sbjct: 87 DPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAE--RLDFLTEIL 144
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
D L+ + + +L S G +MR L LL
Sbjct: 145 D----------------LEGFLKWPVRKL--------------SLGQRMRAELAAALLHP 174
Query: 278 PDLLLLDEPTNHLDLDTI------EWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
P +L LDEPT + LD E+L+ Y ++ +++ +H + LC +++
Sbjct: 175 PKVLFLDEPT--VGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVL 228
|
Length = 325 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 7e-15
Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 21/141 (14%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++N+ + + + NL I GE ++GP+GCGK+T L++I GLE+P G + +G
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60
Query: 485 EHNV--LPNYFEQN-----QAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLG 528
+V LP +++ Q AL TV + +A + D R+ ++ LL
Sbjct: 61 GRDVTDLPPK-DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQ 119
Query: 529 RCNFKADMLDRKVSLLSGGEK 549
+LDRK LSGG++
Sbjct: 120 ----IEHLLDRKPKQLSGGQR 136
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 7e-15
Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 25/147 (17%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
++++NL Y A +L IERGE I+G +G GKSTL +L+ GLEKP G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 481 VLLGEHNVLPNYFE-----------QNQAEALDLDKTVLETVAEAAEDWRIDDIKG---- 525
+LL + P Q+ +L+ +TV ++E R +
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEP---LRPHGLSKSQQR 120
Query: 526 ---LLGRCNFKADMLDRKVSLLSGGEK 549
LL + LDR+ LSGG++
Sbjct: 121 IAELLDQVGLPPSFLDRRPHELSGGQR 147
|
Length = 252 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 7e-15
Identities = 63/243 (25%), Positives = 96/243 (39%), Gaps = 67/243 (27%)
Query: 113 LKDVTWEVK---KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---------KAKSN 160
L D T ++ E G+ G +GAGK+T LR IAG E+PD G ++ + K N
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 161 M-----KIAFLSQEFEVSMSRTVRE--EFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ KI + Q++ + VRE F K E V + L
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNRED---RISVDELL---------- 116
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
+ LD L +R A S G + R++L +
Sbjct: 117 --------------DLLGLDHL-----------------LNRYPAQLSGGEKQRVALARA 145
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ----DVPMVIISHDRAFLDQLCTKIVET 329
L P+LLLLDEP + LD L L + ++P++ ++HD + + L +IV
Sbjct: 146 LAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVM 205
Query: 330 EMG 332
E G
Sbjct: 206 EDG 208
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 7e-15
Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 51/204 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+ L +SKSY V+ D+++ + +GE GL+G NGAGK+T R++ G PD G +
Sbjct: 5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVL 64
Query: 156 ------KAK-SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ-KALESAV 207
+A+ + + I + Q + TVRE + + G+ + + +E+ +
Sbjct: 65 GEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLL--------VFGRYFGMSTREIEAVI 116
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
L EF L+ KA D VA S G + R
Sbjct: 117 PS-------LLEFARLESKA--------------------------DVRVALLSGGMKRR 143
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD 291
++L + L+ DP LL+LDEPT LD
Sbjct: 144 LTLARALINDPQLLILDEPTTGLD 167
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 8e-15
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ ++N+ Y A +L++E GE A++GP+GCGKSTLL++I GLE+P GE
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 481 VLLG 484
VL+
Sbjct: 61 VLVD 64
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (183), Expect = 9e-15
Identities = 57/208 (27%), Positives = 83/208 (39%), Gaps = 56/208 (26%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---KA 157
N+S G T+L DV+ ++ GE V ++G NGAGK+T LR ++G+ PDSG V +
Sbjct: 6 RNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRP 65
Query: 158 KSNMK-------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDM 210
++ A L Q +S TV E+
Sbjct: 66 LADWSPAELARRRAVLPQHSSLSFPFTVE-----------EVVA---------------- 98
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
MGR +A+ L V+ + ++ R S G Q R+ L
Sbjct: 99 --MGRA----PHGLSRAEDDAL------VAAALAQVDLAH-LAGRDYPQLSGGEQQRVQL 145
Query: 271 GKILLQ------DPDLLLLDEPTNHLDL 292
++L Q P LLLDEPT+ LDL
Sbjct: 146 ARVLAQLWEPDGPPRWLLLDEPTSALDL 173
|
Length = 258 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 9e-15
Identities = 85/401 (21%), Positives = 147/401 (36%), Gaps = 99/401 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+ + I KS+ V LK V V GE L+G NGAGK+T +++++G EP G +
Sbjct: 6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITIN 65
Query: 156 ---------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
K + + I + QE V TV E G+ +K
Sbjct: 66 NINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLY---------IGRHL-TKKVCGVN 115
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+ D M R A+ L + KV D D VA+ S +
Sbjct: 116 IIDWREM-----------RVRAAMMLLRVGLKV------------DLDEKVANLSISHKQ 152
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL---EGYLGKQDVPMVIISHDRAFLDQLC 323
+ + K L+ D ++++DEPT+ L +++L L K+ +V ISH A + ++C
Sbjct: 153 MLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRIC 212
Query: 324 TKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSG 383
+ V++ + + S + D+ N
Sbjct: 213 DRYT-----------------VMKDGSSVCS---------GMV---SDVSN--------- 234
Query: 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVV-TIKNLEFGYEDRLLFNR 442
+ RL +++ F + V ++N+ DR
Sbjct: 235 ------DDIVRLMVGRELQNRFNAMK-----ENVSNLAHETVFEVRNVT--SRDRKKVRD 281
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ ++ RGE G G G++ L+ + G++K GGE+ L
Sbjct: 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRL 322
|
Length = 510 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 1e-14
Identities = 54/204 (26%), Positives = 81/204 (39%), Gaps = 37/204 (18%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
N++ S + + +++ + GE + + G NG GKTT LRI+AG PDSG
Sbjct: 3 ARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSG------- 55
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
EV + T E + G L ++ L SA++++ +
Sbjct: 56 -----------EVRWNGTALAEQRDEPHRNILYLGHLPGLKPEL-SALENLHFWAAIHGG 103
Query: 220 FDLLQRKA-QAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
A AV L GF D A S+G Q R++L ++ L
Sbjct: 104 AQRTIEDALAAVGLT-------------GFE----DLPAAQLSAGQQRRLALARLWLSRA 146
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYL 302
L +LDEPT LD + L G L
Sbjct: 147 PLWILDEPTTALDKAGVALLAGLL 170
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 1e-14
Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD--SG 152
G++++++ +Y TVL D++ E++ GE + L+G +G GKTT LR IAG + +G
Sbjct: 3 CGGIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTG 62
Query: 153 NVIKAKSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
+ A ++ +A L Q + + V + AF
Sbjct: 63 RIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNV--AF------------------ 102
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
L + + + D+ +R A A+ L L D L A S G
Sbjct: 103 ------GLRAQKMPKADIAERVADALKLVGL--------------GDAAAHLPAQLSGGM 142
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLD 291
Q R+++ + + +PD+LLLDEP + LD
Sbjct: 143 QQRIAIARAIAIEPDVLLLDEPLSALD 169
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 1e-14
Identities = 60/211 (28%), Positives = 95/211 (45%), Gaps = 51/211 (24%)
Query: 97 GVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++L ++S Y G VL V+ ++ GE+V ++G +G+GK+T L +AG +P G V
Sbjct: 334 TLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVT 393
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE--EMEIAGKLERVQKAL 203
+ + +++ +Q+ + TVRE A + + E+ LERV A
Sbjct: 394 LDGVPVSSLDQDEVRRRVSVCAQDAHL-FDTTVRENLRLARPDATDEELWAALERVGLA- 451
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
D + L D LDT+ + E G A S G
Sbjct: 452 -------DWLRALPD------------GLDTV-------LGEGG----------ARLSGG 475
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ R++L + LL D +LLLDEPT HLD +T
Sbjct: 476 ERQRLALARALLADAPILLLDEPTEHLDAET 506
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 1e-14
Identities = 69/268 (25%), Positives = 113/268 (42%), Gaps = 80/268 (29%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
S ++++N+ K + G TVL + EVK GE V ++G +G+GKTT LR I E+P++G +
Sbjct: 2 SAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR 61
Query: 155 -----------IKAKSNM------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLE 197
+ + + + F+ Q F + RTV E I G +
Sbjct: 62 VGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENI---------IEGPVI 112
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
+ E A A+ +L+ ++G +
Sbjct: 113 VKGEPKEEAT-----------------------------ARARELLAKVGLAGKE-TSYP 142
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMV 310
S G Q R+++ + L P+++L DEPT+ LD L+TI L ++ MV
Sbjct: 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIR----QLAQEKRTMV 198
Query: 311 IISH---------DRA-FLDQLCTKIVE 328
I++H DRA F+DQ +IVE
Sbjct: 199 IVTHEMSFARDVADRAIFMDQ--GRIVE 224
|
Length = 250 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 2e-14
Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 13/99 (13%)
Query: 98 VKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
++ +N+S SY + VLKDV+ +K GEKV +VG +G+GK+T L+++ +P SG +
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 155 --------IKAKSNMK-IAFLSQEFEVSMSRTVREEFMS 184
+ +S K IA++ Q+ + S T+RE +S
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFL-FSGTIRENILS 98
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 2e-14
Identities = 64/208 (30%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+ + ++S + TVL V V++G VGLVG NGAGKTT LR I G P +G V
Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA 63
Query: 155 ---IKAKS----NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
++A S + ++A + Q+ +S VR+ +E
Sbjct: 64 GDDVEALSARAASRRVASVPQDTSLSFEFDVRQ---------------------VVE--- 99
Query: 208 DDMDLMGRL--LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
MGR FD +T A V + M G A DR V S S G +
Sbjct: 100 -----MGRTPHRSRFDTWT--------ETDRAAVERAMERTG-VAQFADRPVTSLSGGER 145
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLD 293
R+ L + L Q +LLLDEPT LD++
Sbjct: 146 QRVLLARALAQATPVLLLDEPTASLDIN 173
|
Length = 402 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 55/204 (26%), Positives = 86/204 (42%), Gaps = 48/204 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
++ EN+SK Y + DV +++GE + L+G +G+GKTT L++I EP SG + I
Sbjct: 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILID 61
Query: 157 AKSNM---------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ KI ++ Q+ + TV E A ++ K ++A E
Sbjct: 62 GEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENI--ATVPKLLGWDKERIKKRADEL-- 117
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+DL+G LD + R EL S G Q R
Sbjct: 118 --LDLVG--LDPSEYADRYPH----------------EL--------------SGGQQQR 143
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD 291
+ + + L DP +LL+DEP LD
Sbjct: 144 VGVARALAADPPILLMDEPFGALD 167
|
Length = 309 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 57/251 (22%), Positives = 99/251 (39%), Gaps = 85/251 (33%)
Query: 98 VKLENISKSY---------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148
++++N+ K + + V + V++ +K+GE +GLVG +G GK+T R+I G EE
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 149 PDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
P SG ++ I LS KEE + ERV + LE
Sbjct: 65 PTSGEILFEG--KDITKLS-------------------KEE-----RRERVLELLE---- 94
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
++G + R S G + R+
Sbjct: 95 ------------------------------------KVGLPEEFLYRYPHELSGGQRQRI 118
Query: 269 SLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLDQ 321
+ + L +P L++ DEP + LD L+ ++ L+ LG + + ISHD + +
Sbjct: 119 GIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG---LTYLFISHDLSVVRY 175
Query: 322 LCTKIVETEMG 332
+ +I +G
Sbjct: 176 ISDRIAVMYLG 186
|
Length = 268 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 2e-14
Identities = 58/244 (23%), Positives = 95/244 (38%), Gaps = 65/244 (26%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---KAKSNM----- 161
+++LK V VK+GE V +VG +G+GK+T L ++AG ++P SG V + +
Sbjct: 23 LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDAR 82
Query: 162 ------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+ F+ Q F + + T E +E+ G+
Sbjct: 83 AALRARHVGFVFQSFHLIPNLTALENVALP----LELRGESSA----------------- 121
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV---ASFSSGWQMRMSLGK 272
D + +AV L G RL A S G Q R++L +
Sbjct: 122 --DSRAGAKALLEAVGL--------------------GKRLTHYPAQLSGGEQQRVALAR 159
Query: 273 ILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVE 328
PD+L DEPT +LD T + L ++ +V+++HD L C + +
Sbjct: 160 AFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ-LAARCDRQLR 218
Query: 329 TEMG 332
G
Sbjct: 219 LRSG 222
|
Length = 228 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 2e-14
Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 58/247 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ +EN+SKSY VL DV+ ++ KG ++G NGAGK+T L +++ + DSG +
Sbjct: 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITID 61
Query: 158 KSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ K++ L QE ++ TVR+ + F G+ Q L
Sbjct: 62 GLELTSTPSKELAKKLSILKQENHINSRLTVRD--LVGF-------GRFPYSQGRLTK-- 110
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+D ++ ++ L D DR + S G + R
Sbjct: 111 EDRRIINEAIEYLHL---------------------------EDLSDRYLDELSGGQRQR 143
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLD 320
+ +L QD D +LLDEP N+LD + + L LGK +V++ HD F
Sbjct: 144 AFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKT---IVVVLHDINFAS 200
Query: 321 QLCTKIV 327
IV
Sbjct: 201 CYSDHIV 207
|
Length = 252 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 2e-14
Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 53/230 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+K+EN+SK +K LK+V+ EV++G+ ++G G+GK+ L IAG +PDSG ++
Sbjct: 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLN 59
Query: 156 -KAKSNMK-----IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
K +N+ I+++ Q + + TV + A+ + K E +K LE
Sbjct: 60 GKDITNLPPEKRDISYVPQNYALFPHMTVYKNI--AYGLKKRKVDKKEIERKVLE----- 112
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ +L LL RK + S G Q R++
Sbjct: 113 ---IAEMLGIDHLLNRK------------------------------PETLSGGEQQRVA 139
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
+ + L+ +P +LLLDEP + LD+ T E L+ + V ++ ++HD
Sbjct: 140 IARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 2e-14
Identities = 95/406 (23%), Positives = 161/406 (39%), Gaps = 105/406 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
+ +ISK Y GV VLK + + + GE L+G NGAGK+T ++IIAG PDSG + I
Sbjct: 12 LCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIG 71
Query: 157 AKS----------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ I + QE + + +V+E + + K++++ AL
Sbjct: 72 GNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ 131
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+D LD + A +L+ D ++ +++
Sbjct: 132 LD--------LD--------SSAGSLEVADRQIVEIL----------------------- 152
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLC 323
+ L++D +L+LDEPT L E L L Q V +V ISH + QL
Sbjct: 153 -----RGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLA 207
Query: 324 TKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSG 383
+I V R +G A + ++ T D+I + A
Sbjct: 208 DRI-----SVMR--DG----------------TIALSGKTADLS-TDDIIQAITPAAREK 243
Query: 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEF-GYEDRLLFNR 442
S+++K +E P R+Q P V+T+++L G+ +
Sbjct: 244 SLSASQKL--------WLELPGNRRQQAAGAP--------VLTVEDLTGEGFRN------ 281
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
+L + GE + G G G++ L + + GL RGG ++L +
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEI 327
|
Length = 510 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 3e-14
Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 50/202 (24%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI----- 155
+N++K+YKG V++DV+ V GE VGL+G NGAGKTT ++ G D+GN+I
Sbjct: 7 KNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDED 66
Query: 156 ------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
A++ I +L QE + +V + M+ ++I L Q+
Sbjct: 67 ISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAV----LQIRDDLSAEQRE------- 115
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
D L++EF + L +G S S G + R+
Sbjct: 116 -DRANELMEEFH-----------------IEHLRDSMG----------QSLSGGERRRVE 147
Query: 270 LGKILLQDPDLLLLDEPTNHLD 291
+ + L +P +LLDEP +D
Sbjct: 148 IARALAANPKFILLDEPFAGVD 169
|
Length = 241 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 4e-14
Identities = 70/256 (27%), Positives = 111/256 (43%), Gaps = 70/256 (27%)
Query: 98 VKLENISKSY----KGVTVLKD-VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+K+ N+SK Y +GV D V+ EVK+GE G+VG +GAGKTT +IIAG EP SG
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339
Query: 153 NV-----------------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195
V + ++ I L QE+++ RTV + A E+
Sbjct: 340 EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLEL----- 394
Query: 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG-- 253
+L + KA + TL +GF +
Sbjct: 395 -----------------------PDELARMKA----VITLKM--------VGFDEEKAEE 419
Query: 254 --DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPM-- 309
D+ S G + R++L ++L+++P +++LDEPT +D T + + K M
Sbjct: 420 ILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQ 479
Query: 310 --VIISHDRAFLDQLC 323
+I+SHD F+ +C
Sbjct: 480 TFIIVSHDMDFVLDVC 495
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 4e-14
Identities = 25/66 (37%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++I N+ F Y +++ + +L +++GEK A++G +G GKSTLL+L+ G KP+ GE+
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 483 LGEHNV 488
L V
Sbjct: 61 LDGVPV 66
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 4e-14
Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 57/164 (34%)
Query: 137 TTQLRIIAGQEEPDSGNVI-----------KAKSNMKIAFLSQEFEVSMSRTVREE-FMS 184
+T L++I G +P SG ++ + +I + Q+ ++ TVRE F
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 185 AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244
+E + R ++ALE
Sbjct: 61 LRDKEAD-----ARAEEALE---------------------------------------- 75
Query: 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTN 288
+G V + S G + R+++ + LL+ P LLLLDEPT
Sbjct: 76 RVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 6e-14
Identities = 70/246 (28%), Positives = 105/246 (42%), Gaps = 54/246 (21%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
L+ +S S+ G L D+++ V GE L+G NGAGKTT + +I G+ P G V
Sbjct: 7 YLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG 66
Query: 155 ---IKAKSNMKIAFLS-----QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ +IA Q+ V + TVR E +E+A ++ A
Sbjct: 67 DTDLTKLPEHRIARAGIGRKFQKPTVFENLTVR--------ENLELALNRDKSVFAS--- 115
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT--ADDGDRLVASFSSGW 264
L RL E + +D L L D+ DRL A S G
Sbjct: 116 -----LFARLRAE--------ERRRIDEL----------LATIGLGDERDRLAALLSHGQ 152
Query: 265 QMRMSLGKILLQDPDLLLLDEP----TNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLD 320
+ + +G +L QDP LLLLDEP T+ T E L+ GK + +++ HD F+
Sbjct: 153 KQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSI--LVVEHDMGFVR 210
Query: 321 QLCTKI 326
++ K+
Sbjct: 211 EIADKV 216
|
Length = 249 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 7e-14
Identities = 58/203 (28%), Positives = 83/203 (40%), Gaps = 52/203 (25%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK-- 156
++NI K + T LKD++ VKKGE V L+G +G GKTT LRIIAG E +G + +
Sbjct: 6 SIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGG 65
Query: 157 --------AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
K + I F Q + + + TV + A+ + G+ E ++ E
Sbjct: 66 RDITRLPPQKRDYGIVF--QSYALFPNLTVADNI--AYGLKNRGMGRAEVAERVAE---- 117
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
LLD L + S G Q R+
Sbjct: 118 -------LLDLVGLP---------------------------GSERKYPGQLSGGQQQRV 143
Query: 269 SLGKILLQDPDLLLLDEPTNHLD 291
+L + L P LLLLDEP + LD
Sbjct: 144 ALARALATSPGLLLLDEPLSALD 166
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 8e-14
Identities = 57/213 (26%), Positives = 97/213 (45%), Gaps = 56/213 (26%)
Query: 98 VKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
V+ +N++ Y G VL+D++ ++ GE V LVG +G+GK+T + +I + DSG +
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 155 --------IKAKS-NMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GKLERVQK 201
S +I +SQ+ F + TV E IA G+ ++
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLF----NDTVAE----------NIAYGRPGATRE 106
Query: 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261
+E A A+A N + +PE G+ G+R V S
Sbjct: 107 EVEEA--------------------ARAANAHEFIME----LPE-GYDTVIGERGV-KLS 140
Query: 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
G + R+++ + LL+DP +L+LDE T+ LD ++
Sbjct: 141 GGQRQRIAIARALLKDPPILILDEATSALDTES 173
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 1e-13
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 19/140 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++N+ Y + + +L I+ GE ++GP+GCGK+TLL+LI G E P GE+LL
Sbjct: 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60
Query: 485 E---HNVLPNYFEQN---QAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGR 529
N+ P+ N Q AL TV E +A +A R+ + L+
Sbjct: 61 GKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQL 120
Query: 530 CNFKADMLDRKVSLLSGGEK 549
+ +RK S LSGG++
Sbjct: 121 EGYA----NRKPSQLSGGQQ 136
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-13
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 427 IKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
++N+ F Y + + +IE GE AIIGP+G GKSTL +LI+GL +P G V L
Sbjct: 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLD 62
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 1e-13
Identities = 57/242 (23%), Positives = 103/242 (42%), Gaps = 34/242 (14%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++L I+ Y L D+T + +GE + L+G +GAGK++ LR++ E P SG + A
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
++ + + + R +R F ++ + L + +E+ + L
Sbjct: 63 GNHFDFSKTPSDKAI---RDLRRNVGMVF-QQYNLWPHLTVQENLIEAPCRVLGLSKD-- 116
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
Q A+A KL+ L DR S G Q R+++ + L+ +
Sbjct: 117 ------QALARAE----------KLLKRLRL-KPYADRYPLHLSGGQQQRVAIARALMME 159
Query: 278 PDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330
P +LL DEPT LD + I+ L + VI++H+ + +++V E
Sbjct: 160 PQVLLFDEPTAALDPEITAQIVSIIKELAE----TGITQVIVTHEVEVARKTASRVVYME 215
Query: 331 MG 332
G
Sbjct: 216 NG 217
|
Length = 242 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 1e-13
Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 53/232 (22%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
++ EN++ SY + VLKD+ + +K GE V +VG GAGKTT + ++ +P G +
Sbjct: 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62
Query: 155 ---------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
K+ +M I + Q+ S T+ E
Sbjct: 63 DGIDIRDISRKSLRSM-IGVVLQD-TFLFSGTIMENI----------------------- 97
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK-LMPELGFTADDGDRLVASFSSGW 264
+GR + + A+ K+ LG ++G L S G
Sbjct: 98 ------RLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLG---ENGGNL----SQGE 144
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314
+ +++ + +L+DP +L+LDE T+++D +T + ++ L K + +II+H
Sbjct: 145 RQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAH 196
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 2e-13
Identities = 46/150 (30%), Positives = 67/150 (44%), Gaps = 29/150 (19%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ +KNL Y +A +L+IE+GE AI+GP+G GKSTLL ++ GL++P GE
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 481 VLLGEHNVLPNYFEQNQAEAL---------------DLDKTVLETVAEAAE------DWR 519
V + ++ E+ A DL T LE V R
Sbjct: 61 VRVDGTDIS-KLSEKELAAFRRRHIGFVFQSFNLLPDL--TALENVELPLLLAGVPKKER 117
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+ + LL R D L+ S LSGG++
Sbjct: 118 RERAEELLERVGLG-DRLNHYPSELSGGQQ 146
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 2e-13
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +N+ F Y ++ + +LTI GEK AIIG G GKSTLLKL+ GL KP G VL
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 483 LGEHNV 488
L ++
Sbjct: 63 LDGTDI 68
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 54/205 (26%), Positives = 87/205 (42%), Gaps = 49/205 (23%)
Query: 98 VKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-I 155
++ EN++K Y G + ++ E+ KGE + L+G +G+GKTT +++I EP SG + I
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 156 KAKSNM---------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ KI ++ Q+ + TV +E + + KL + K
Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQIGLFPHMTV--------EENIALVPKLLKWPKE---- 108
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+ + +A D L A V + F DR S G Q
Sbjct: 109 -----------------KIRERA---DELLALVG--LDPAEF----ADRYPHELSGGQQQ 142
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R+ + + L DP LLL+DEP LD
Sbjct: 143 RVGVARALAADPPLLLMDEPFGALD 167
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 48/211 (22%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
+++E ++KS+ + ++++EV GE GL+G NGAGKTT R+I G EP G +
Sbjct: 1 MALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT 60
Query: 155 -----IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG-KLERVQKALESAVD 208
+ + +I +L +E + TV ++ K E+ G +QK L+
Sbjct: 61 WNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQ----LKYLAELKGMPKAEIQKKLQ---- 112
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
L+R L+ + K K + S G Q ++
Sbjct: 113 ------------AWLER------LEIVGKKTKK---------------IKELSKGNQQKI 139
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLE 299
++ +P+LL+LDEP + LD +E L+
Sbjct: 140 QFISAVIHEPELLILDEPFSGLDPVNVELLK 170
|
Length = 300 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 50/205 (24%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ V L N++K+Y V + KD+ ++ +GE V VG +G GK+T LR+IAG E+ SG++
Sbjct: 2 ASVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLF 61
Query: 156 KAKSNMKIAFLSQEFEVS-MSRTVREEFMS-------AFKEEMEIAGKLERVQKA-LESA 206
+ M +V R V F S + E M KL +K +
Sbjct: 62 IGEKRMN--------DVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQR 113
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
V+ + +L LL RK +A+ S G +
Sbjct: 114 VNQ---VAEVLQLAHLLDRKPKAL------------------------------SGGQRQ 140
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R+++G+ L+ +P + LLDEP ++LD
Sbjct: 141 RVAIGRTLVAEPSVFLLDEPLSNLD 165
|
Length = 369 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 2e-13
Identities = 56/211 (26%), Positives = 95/211 (45%), Gaps = 57/211 (27%)
Query: 98 VKLENISKSY----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+NISK + + + L +V+ + GE G++G +GAGK+T +R I E P SG
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 154 VIKAKSNM-------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200
V+ ++ +I + Q F + SRTV + A +E+AG
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNV--ALP--LELAGT----- 112
Query: 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF 260
KA+ + A+V++L+ +G +D DR A
Sbjct: 113 ------------------------PKAE------IKARVTELLELVGL-SDKADRYPAQL 141
Query: 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G + R+++ + L +P +LL DE T+ LD
Sbjct: 142 SGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Length = 343 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 50/205 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++ NI KS+ VL D++ ++ G+ V L+G +G+GKTT LRIIAG E SG++
Sbjct: 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFH 62
Query: 155 ------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
+ A+ + K+ F+ Q + + TV + AF + L R ++
Sbjct: 63 GTDVSRLHAR-DRKVGFVFQHYALFRHMTVFDNI--AFGLTV-----LPRRERP------ 108
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL--MPELGFTADDGDRLVASFSSGWQM 266
N + AKV++L M +L A DR A S G +
Sbjct: 109 ----------------------NAAAIKAKVTQLLEMVQLAHLA---DRYPAQLSGGQKQ 143
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R++L + L +P +LLLDEP LD
Sbjct: 144 RVALARALAVEPQILLLDEPFGALD 168
|
Length = 353 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 3e-13
Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 30/133 (22%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNY--------- 492
+ ++ GE +IGPNG GK+TL LI G +P G VL ++ LP +
Sbjct: 20 SFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79
Query: 493 -FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA---------------DM 536
F Q +L TVLE V AA+ + R + D+
Sbjct: 80 TF-QIPRLFPEL--TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADL 136
Query: 537 LDRKVSLLSGGEK 549
DR LS G++
Sbjct: 137 ADRPAGELSYGQQ 149
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 3e-13
Identities = 44/145 (30%), Positives = 60/145 (41%), Gaps = 25/145 (17%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ +NL R L + +LT+ GE AI+GPNG GKSTLL+ + G P GEV L
Sbjct: 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL 61
Query: 484 GEHN--------------VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKG--LL 527
VLP Q +L TV E VA + + L+
Sbjct: 62 NGRPLADWSPAELARRRAVLP------QHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALV 115
Query: 528 GRCNFKADML---DRKVSLLSGGEK 549
+ D+ R LSGGE+
Sbjct: 116 AAALAQVDLAHLAGRDYPQLSGGEQ 140
|
Length = 258 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 4e-13
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ IKNL + D+ + +L++E+GE IIGP+G GKSTLL+ + GLE+P G +
Sbjct: 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 483 LGEHNVL 489
+ +V
Sbjct: 61 VDGEDVG 67
|
Length = 240 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 4e-13
Identities = 45/202 (22%), Positives = 81/202 (40%), Gaps = 37/202 (18%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
+ ++ G + +++ + GE + + G NG+GKTT LRI+AG P +G
Sbjct: 4 DELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAG-------- 55
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEF 220
V ++ + + + G + K S ++++ +
Sbjct: 56 ----------RVLLNGGPLDFQRDSIARGLLYLGHAPGI-KTTLSVLENLRFWHADHSDE 104
Query: 221 DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
+ + A+ V L+ GF DR VA S+G Q R++L ++LL L
Sbjct: 105 QVEEALAR-VGLN-------------GF----EDRPVAQLSAGQQRRVALARLLLSGRPL 146
Query: 281 LLLDEPTNHLDLDTIEWLEGYL 302
+LDEPT LD + +
Sbjct: 147 WILDEPTTALDKAGVARFAEAM 168
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 6e-13
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 426 TIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
++NL GY + + L +L +ERGE A++G NG GK+TLLK IMGL +PR G ++
Sbjct: 5 EVENLSAGYGKIQALRG-VSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFD 63
Query: 485 EHNV 488
++
Sbjct: 64 GEDI 67
|
Length = 237 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 6e-13
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 32/135 (23%)
Query: 423 SVVTIKNLEFGYEDRLLFNRA---------NLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473
++ +KNL+ + F + + +I+ GE ++G +GCGKSTL +LI+GL
Sbjct: 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL 62
Query: 474 EKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK 533
E+P GE+ FE L ++ R + + LL +
Sbjct: 63 EEPTSGEI----------LFEGKDITKLSKEE-------------RRERVLELLEKVGLP 99
Query: 534 ADMLDRKVSLLSGGE 548
+ L R LSGG+
Sbjct: 100 EEFLYRYPHELSGGQ 114
|
Length = 268 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 7e-13
Identities = 56/231 (24%), Positives = 111/231 (48%), Gaps = 37/231 (16%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170
VL +V+ +++GE VGL+G +G GK+T R++ G E+P G V +F Q+
Sbjct: 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTV---------SFRGQD- 74
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230
+ + R++ AF+ ++++ V + SAV+ + +++ E
Sbjct: 75 ---LYQLDRKQ-RRAFRRDVQL------VFQDSPSAVNPRMTVRQIIGE--------PLR 116
Query: 231 NLDTLD-----AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDE 285
+L +LD A++++L+ +G ++D D+L S G R+++ + L P L++LDE
Sbjct: 117 HLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDE 176
Query: 286 PTNHLDL----DTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332
++LD+ +E L + I+HD + C ++ + G
Sbjct: 177 AVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKG 227
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 9e-13
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR--GGEVLL 483
IK+L + + NLTI++GE A++GPNG GKSTL K IMG K GE+L
Sbjct: 2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILF 61
Query: 484 GEHNVL 489
++
Sbjct: 62 KGEDIT 67
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 1e-12
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 37/166 (22%)
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR 316
V + S G + R+ L ++ L+ +LL+LDEPTN LD++T+E LE L ++++SHDR
Sbjct: 438 VKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDR 497
Query: 317 AFLDQLCTK--IVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWE-------------- 360
F+D T+ I E + R Y G Y ++A ++ + A +
Sbjct: 498 QFVDNTVTECWIFEGNGKIGR-YVGGYHDARQQQAQYLALKQPAVKKKEEAAAPKAETVK 556
Query: 361 --------KQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEE 398
K QRE+EQ L+ L E ++E LQ +
Sbjct: 557 RSSKKLSYKLQRELEQLPQLLEDL------------EAEIEALQAQ 590
|
Length = 635 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 1e-12
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 16/140 (11%)
Query: 425 VTIKNLE--FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ I+NL + + + +L + +GE ++G NG GK+T LK++ G +P G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 483 LGEHNVL--PNYFEQN-----QAEALDLDKTVLETVAEAA------EDWRIDDIKGLLGR 529
+ +++ Q+ Q +AL + TV E + A + ++++ LL
Sbjct: 61 INGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRV 120
Query: 530 CNFKADMLDRKVSLLSGGEK 549
+++ LSGG K
Sbjct: 121 LGLTDKA-NKRARTLSGGMK 139
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 1e-12
Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 53/227 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
V+ +++K + L+ E+ +GE +G+VG NG GKTT +++AG +PD G V
Sbjct: 341 VEYPDLTKKLGDFS-LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV--- 396
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+KI++ Q + TV E+ L + L S+ +++ L
Sbjct: 397 DPELKISYKPQYIKPDYDGTV-EDL-------------LRSITDDLGSSYYKSEIIKPL- 441
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
L+ +L+ D+ V S G R+++ L +D
Sbjct: 442 -------------QLE-------RLL----------DKNVKDLSGGELQRVAIAACLSRD 471
Query: 278 PDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLD 320
DL LLDEP+ HLD L + + +++ +++ HD +D
Sbjct: 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMID 518
|
Length = 590 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 61/199 (30%), Positives = 93/199 (46%), Gaps = 42/199 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
V L+NI+K + TV+ ++ +K+G V L+G +G GKTT LR++AG E+P G +
Sbjct: 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI--- 63
Query: 158 KSNMKIAFLSQEFEVSMS----RTVREEFMS-AFKEEMEIAGKLERVQKALESAVDDMDL 212
F+ E +V+ R + F S A M + E V L+ +
Sbjct: 64 -------FIDGE-DVTHRSIQQRDICMVFQSYALFPHMSLG---ENVGYGLK-------M 105
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+G +E QR +A+ L L GF DR V S G Q R++L +
Sbjct: 106 LGVPKEE--RKQRVKEALELVDLA----------GF----EDRYVDQISGGQQQRVALAR 149
Query: 273 ILLQDPDLLLLDEPTNHLD 291
L+ P +LL DEP ++LD
Sbjct: 150 ALILKPKVLLFDEPLSNLD 168
|
Length = 351 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 2e-12
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ IKNL + D + +LT+++GE IIGP+G GKSTLL+ I LE+P G +++
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60
Query: 485 EHNV 488
+
Sbjct: 61 GLKL 64
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 2e-12
Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 19/141 (13%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE- 485
+KN+ + D+++ + NLTIE+G+ AIIG +G GKSTLL +I LEK G+V L
Sbjct: 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQ 60
Query: 486 -----HNVLPNYFEQN------QAEALDLDKTVLETVAEAAEDWRIDD------IKGLLG 528
++ + F + Q AL ++TV E + + ++ K L
Sbjct: 61 ETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALE 120
Query: 529 RCNFKADMLDRKVSLLSGGEK 549
+ L +K+ LSGGE+
Sbjct: 121 KVGLNLK-LKQKIYELSGGEQ 140
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 2e-12
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEV 481
+++L Y D+ +L I +GE TA+IGP+GCGKSTLL+L+ L P GEV
Sbjct: 3 LRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEV 62
Query: 482 LLGEHNV 488
LL ++
Sbjct: 63 LLDGKDI 69
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 2e-12
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 21/112 (18%)
Query: 385 ASSAEKKLERL----QEEEQIEKPFQRKQM--KIRFPERGRSGRSVVTIKNLEFGY--ED 436
A +A + L+ L E + + R ++ +I F +N+ F Y ++
Sbjct: 431 AKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEF-------------RNVSFAYPGQE 477
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
+ +LTI GEK AIIG G GKSTLLKL++GL +P G VLL ++
Sbjct: 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDI 529
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 19/141 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +N+ Y ++ + NLTIE GE +IGP+G GK+T LK+I L +P GE+L+
Sbjct: 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILID 61
Query: 485 EHNV--LPNYFEQN------QAEALDLDKTVLETVA---------EAAEDWRIDDIKGLL 527
++ L + Q L TV E +A + R D++ L+
Sbjct: 62 GEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLV 121
Query: 528 GRCNFKADMLDRKVSLLSGGE 548
G ++ DR LSGG+
Sbjct: 122 GLD--PSEYADRYPHELSGGQ 140
|
Length = 309 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 2e-12
Identities = 50/211 (23%), Positives = 89/211 (42%), Gaps = 50/211 (23%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV----- 154
+ I K++ GV L D++++ + G+ L+G NGAGK+T L+I++G +PD+G++
Sbjct: 7 FDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQ 66
Query: 155 ------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
A +A + QE + TV E
Sbjct: 67 EMRFASTTAALAAGVAIIYQELHLVPEMTVAENLY------------------------- 101
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG-WQMR 267
+G+L + ++ R+ L+ + + + LG D D + S G QM
Sbjct: 102 ----LGQLPHKGGIVNRR-------LLNYEAREQLEHLGVDIDP-DTPLKYLSIGQRQM- 148
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWL 298
+ + K L ++ ++ DEPT+ L IE L
Sbjct: 149 VEIAKALARNARVIAFDEPTSSLSAREIEQL 179
|
Length = 501 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 2e-12
Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 21/218 (9%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
+SKSY G +DV++++ GE +G+VG +G+GK+T L +AG+ PD G +
Sbjct: 8 GLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSG 67
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
L Q E R +R E+ F + G RV M + R
Sbjct: 68 AELELYQLSEAERRRLMRTEW--GFVHQNPRDGLRMRVSAGANIGERLMAIGAR------ 119
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
+ + A + E+ D L +FS G Q R+ + + L+ P L+
Sbjct: 120 ---------HYGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLV 170
Query: 282 LLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
+DEPT LD+ ++ L G + + ++I++HD
Sbjct: 171 FMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD 208
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 2e-12
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 27/143 (18%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + ++ F Y + R +LT+ GE AI+GP+G GKSTLL LI G E P GE+L+
Sbjct: 2 LALDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILIN 59
Query: 485 --EHNVLPNY-------FEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGL 526
+H P F++N L TV + + A + +++
Sbjct: 60 GVDHTASPPAERPVSMLFQENN---LFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQ 116
Query: 527 LGRCNFKADMLDRKVSLLSGGEK 549
+G A L R LSGG++
Sbjct: 117 VGL----AGFLKRLPGELSGGQR 135
|
Length = 231 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 2e-12
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +NL GY + + N +L++ G+ TA+IGPNGCGKSTLLK L P+ G V LG
Sbjct: 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLG 62
Query: 485 E 485
+
Sbjct: 63 D 63
|
Length = 255 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 3e-12
Identities = 60/244 (24%), Positives = 116/244 (47%), Gaps = 35/244 (14%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
E++ K Y VLK V+ + G+ + ++G +G+GK+T LR I E+P +G++
Sbjct: 10 EDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIR----- 64
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL---MGRLL 217
++ E E+ + R + A K +L+R++ L +L M L
Sbjct: 65 -----VNGE-EIRLKRDKDGQLKPADKR------QLQRLRTRLGMVFQHFNLWSHMTVLE 112
Query: 218 DEFD-----LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+ + L KA+A+ + K + ++G A+ D A S G Q R+++ +
Sbjct: 113 NVIEAPVHVLGVSKAEAI------ERAEKYLAKVGI-AEKADAYPAHLSGGQQQRVAIAR 165
Query: 273 ILLQDPDLLLLDEPTNHLDLDTI-EWLE--GYLGKQDVPMVIISHDRAFLDQLCTKIVET 329
L +P+++L DEPT+ LD + + E L+ L ++ MV+++H+ F + + ++
Sbjct: 166 ALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFL 225
Query: 330 EMGV 333
G
Sbjct: 226 HQGK 229
|
Length = 256 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 3e-12
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 412 IRFPERG--RSGRSVVTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLL 467
+ FP + + +T+ N+ F Y D+ + +L I+ GEK A++G GCGKSTLL
Sbjct: 324 VTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLL 383
Query: 468 KLIMGLEKPRGGEVLLGEHNVLPNYFEQ 495
+L+ P+ GE+LL + +Y E
Sbjct: 384 QLLTRAWDPQQGEILLNGQP-IADYSEA 410
|
Length = 574 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 3e-12
Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 58/213 (27%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++ EN+S S G +L V+ +++ GE + ++G NGAGK+T L+ ++G+ PDSG V
Sbjct: 2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLN 61
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES- 205
+ + + A L Q ++ TV+E ++ R+
Sbjct: 62 GVPLNSWPPEELARHR-AVLPQNSSLAFPFTVQEVV------------QMGRIPHRSGRE 108
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
+D + + L DL G R + S G Q
Sbjct: 109 PEEDERIAAQALAATDL-----------------------SGLAG----RDYRTLSGGEQ 141
Query: 266 MRMSLGKILLQ------DPDLLLLDEPTNHLDL 292
R+ L ++L Q L LDEPT+ LD+
Sbjct: 142 QRVQLARVLAQLWPPVPSGRWLFLDEPTSALDI 174
|
Length = 259 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 3e-12
Identities = 47/212 (22%), Positives = 76/212 (35%), Gaps = 61/212 (28%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
E+++ G + +++ + GE + L G NG+GKTT LR+IAG P +G + +
Sbjct: 6 EDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD 65
Query: 161 MKIAFLSQEFEVSM----------SRTVRE--EFMSAFKEEMEIAGKLERVQKALESAVD 208
E + TV E EF +AF G+ + ALE
Sbjct: 66 ---IDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL-----GGEELDIAAALE---- 113
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
AV L L S+G + R+
Sbjct: 114 --------------------AVGLAPL-----------------AHLPFGYLSAGQKRRV 136
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG 300
+L ++L+ + + +LDEPT LD +
Sbjct: 137 ALARLLVSNRPIWILDEPTAALDAAAVALFAE 168
|
Length = 207 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 4e-12
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 22/161 (13%)
Query: 410 MKIRFP-ERGRSGRSVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTL 466
++ FP E+ + + ++N+ F Y NLT+ +GEK AI+G +G GKSTL
Sbjct: 321 PEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTL 380
Query: 467 LKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD--------LDKTVLETVAEAAED- 517
L+L+ G P+ G + L + + EQ E + T+ + + A D
Sbjct: 381 LQLLAGAWDPQQGSITLNGVEI-ASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDA 439
Query: 518 -----WRIDDIKGLLGRCNFKADMLDRKVSL----LSGGEK 549
W GL D L+ + LSGGE+
Sbjct: 440 SDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGER 480
|
Length = 573 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 4e-12
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 436 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-LPNYFE 494
R+LF+ + T+ GE + GPNG GK+TLL+LI GL P G + L ++ P+ E
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAE 73
Query: 495 QNQ----AEALDLDKTVLETVAEAAEDWRIDDIKG 525
A+ K L TVAE E W G
Sbjct: 74 ACHYLGHRNAM---KPAL-TVAENLEFWA--AFLG 102
|
Length = 207 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-12
Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ +++K Y L +V++E +KG VG +G NGAGK+T ++II G PDSG+V
Sbjct: 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV- 61
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
L EV + E + +M V++ L+ + G+LL
Sbjct: 62 ---CGEDVLQNPKEVQRNIGYLPEHNPLY-LDM-------YVREYLQFIAGIYGMKGQLL 110
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
QR + + L L + K + +L S G++ R+ L + L+ D
Sbjct: 111 K-----QRVEEMIELVGLRPEQHKKIGQL--------------SKGYRQRVGLAQALIHD 151
Query: 278 PDLLLLDEPTNHLD 291
P +L+LDEPT LD
Sbjct: 152 PKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 4e-12
Identities = 48/214 (22%), Positives = 77/214 (35%), Gaps = 56/214 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++ EN+S T+ D+++ + GE + + G NGAGKTT LRI+AG PD+G V
Sbjct: 3 LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62
Query: 158 KSNMK---------IAFLSQEFEVSMSRTVREE--FMSAFKEEMEIAGKLERVQKALESA 206
++ + +L + + T E F F + A
Sbjct: 63 GEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGN--------AATIWEA 114
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+ + L G D V S+G Q
Sbjct: 115 LAQVGLAGLE-------------------------------------DLPVGQLSAGQQR 137
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG 300
R++L ++ L L +LDEP LD + + L
Sbjct: 138 RVALARLWLSPAPLWILDEPFTALDKEGVALLTA 171
|
Length = 209 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 5e-12
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 419 RSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
++++NL F Y D + + NLTI+ G+ TA++G +G GKSTLL L++G P
Sbjct: 315 NEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT 374
Query: 478 GGEVLLGEHNV 488
GE+ + ++
Sbjct: 375 QGEIRVNGIDL 385
|
Length = 559 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 5e-12
Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 19/139 (13%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+K + + D + N +L++ GE AI GP+GCGKSTLLK++ L P G +L
Sbjct: 5 ELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEG 64
Query: 486 HNVL---PNYFEQNQAEALDLDKTVLETVAEAAED-----WRI-------DDIKGLLGRC 530
+V P + Q + +TV ED W+I LL R
Sbjct: 65 EDVSTLKPEAYRQQVSYCAQTPALFGDTV----EDNLIFPWQIRNRRPDRAAALDLLARF 120
Query: 531 NFKADMLDRKVSLLSGGEK 549
+L + ++ LSGGEK
Sbjct: 121 ALPDSILTKNITELSGGEK 139
|
Length = 223 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 6e-12
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 49/220 (22%)
Query: 87 SNTGASSISSGVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144
+ + A++ + L N+S +Y VLK ++ ++K GEKV L+G G GK+T L+++
Sbjct: 328 TTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT 387
Query: 145 GQEEPDSGNVIKAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194
+P G ++ + I+ +SQ + S T+R+
Sbjct: 388 RAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL-FSATLRDN------------- 433
Query: 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254
+ A +A D+ L+ ++LQ+ V L+ L L LG +G
Sbjct: 434 ----LLLAAPNASDE-----ALI---EVLQQ----VGLEKLLEDDKGLNAWLG----EGG 473
Query: 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
R + S G Q R+ + + LL D LLLLDEPT LD +T
Sbjct: 474 RQL---SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAET 510
|
Length = 574 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 6e-12
Identities = 66/219 (30%), Positives = 86/219 (39%), Gaps = 46/219 (21%)
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA-----KSNMKIAFLSQ--EFE 171
KGE +GL+G NGAGKTT LR I G P G V A K I ++ Q EF
Sbjct: 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFA 61
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
+V MS + G L R A +AV D L+R V
Sbjct: 62 WDFPISVAHTVMSGRTGHI---GWLRRPCVADFAAVRDA------------LRR----VG 102
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
L L DR V S G + R+ + + L P +LLLDEP LD
Sbjct: 103 LTEL-----------------ADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLD 145
Query: 292 LDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKIV 327
+ T E L L +++ +HD A C ++V
Sbjct: 146 MPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVV 184
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 6e-12
Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 88 NTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147
N SS+S V+L ISKS+ G V+ ++ + GE + L+G +G GKTT LR+IAG E
Sbjct: 5 NKQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE 64
Query: 148 EPDSGNVI 155
PDSG ++
Sbjct: 65 TPDSGRIM 72
|
Length = 375 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 7e-12
Identities = 43/129 (33%), Positives = 59/129 (45%), Gaps = 30/129 (23%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPN----YFEQN- 496
+ I +GE + GP+G GKSTLLKLI G E+P G++L+ H++ L + +
Sbjct: 22 SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81
Query: 497 ----QAEALDLDKTVLETVAEAAE-------DWRID-----DIKGLLGRCNFKADMLDRK 540
Q L D+TV E VA + R D+ GL KA L
Sbjct: 82 GVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKH----KARALP-- 135
Query: 541 VSLLSGGEK 549
S LSGGE+
Sbjct: 136 -SQLSGGEQ 143
|
Length = 223 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 8e-12
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVII 312
V S G + R++L + LL +PDLLLLDEPT+ LD + E L L ++ ++I+
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIV 136
Query: 313 SHDRAFLDQLCTKIV 327
+HD + +++
Sbjct: 137 THDPELAELAADRVI 151
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 8e-12
Identities = 60/244 (24%), Positives = 105/244 (43%), Gaps = 37/244 (15%)
Query: 98 VKLENISKSY-------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD 150
+++E++SK++ + VLK+V+ V GE V L G +GAGK+T L+ + PD
Sbjct: 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD 61
Query: 151 SGNVIKAKSNMKIAFLSQ--EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
SG I + L+Q EV R ++S F + RV ALE +
Sbjct: 62 SGR-ILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR------VIPRVS-ALEVVAE 113
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
+ G + R + + + ++ L P A+FS G Q R+
Sbjct: 114 PLLERGVPREA--ARARARELLARLNIPERLWHLPP-------------ATFSGGEQQRV 158
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324
++ + + D +LLLDEPT LD +E + + ++ I HD + +
Sbjct: 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAE-AKARGAALIGIFHDEEVRELVAD 217
Query: 325 KIVE 328
++++
Sbjct: 218 RVMD 221
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 9e-12
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 65/217 (29%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQ----LRIIAGQEEPDS 151
++ +N+S Y+ VLK++++ +K GEKVG+VG G+GK++ R++ E S
Sbjct: 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV----ELSS 58
Query: 152 GNVI------------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE--EMEIAGKLE 197
G+++ +S +I+ + Q+ V S T+R + F E + E+ LE
Sbjct: 59 GSILIDGVDISKIGLHDLRS--RISIIPQD-PVLFSGTIRSN-LDPFGEYSDEELWQALE 114
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
RV L+ V+ + LD V + G+
Sbjct: 115 RVG--LKEFVESL---------------------PGGLDTVV----------EEGGE--- 138
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ S G + + L + LL+ +L+LDE T +D +T
Sbjct: 139 -NLSVGQRQLLCLARALLRKSKILVLDEATASVDPET 174
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 1e-11
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA 500
+ +L++ RGE A++G NG GKSTL+K++ GL KP GE+L+ V + +A
Sbjct: 17 DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFA----SPRDA 72
Query: 501 LDL 503
Sbjct: 73 RRA 75
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 1e-11
Identities = 54/230 (23%), Positives = 92/230 (40%), Gaps = 67/230 (29%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIK 156
+++++ S G +LK V +KKGE L+G NG+GK+T + I G E G
Sbjct: 2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEG---- 57
Query: 157 AKSNMKIAFLSQEF-EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+I F ++ ++ R AF+ EI G V + D + R
Sbjct: 58 -----EILFKGEDITDLPPEERARLGIFLAFQYPPEIPG------------VKNADFL-R 99
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
++E FS G + R + ++LL
Sbjct: 100 YVNE---------------------------------------GFSGGEKKRNEILQLLL 120
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLE---GYLGKQDVPMVIISHDRAFLDQL 322
+PDL +LDEP + LD+D + + L ++ ++II+H + LD +
Sbjct: 121 LEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYI 170
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 1e-11
Identities = 56/230 (24%), Positives = 107/230 (46%), Gaps = 49/230 (21%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
++ EN+S SY VLKD+++ ++ GEKV +VG +G+GK+T ++++ +P SG +
Sbjct: 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388
Query: 155 -IKAKSNM-------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
++ +I +SQ+ + S T+RE
Sbjct: 389 DGIDIRDISLDSLRKRIGIVSQDPLL-FSGTIRENI------------------------ 423
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+GR + ++ + N ++ L G+ G+R V + S G +
Sbjct: 424 -----ALGRPDATDEEIEEALKLANAHEF---IANL--PDGYDTIVGERGV-NLSGGQRQ 472
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314
R+++ + LL++P +L+LDE T+ LD +T ++ L K + +II+H
Sbjct: 473 RLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAH 522
|
Length = 567 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 65/245 (26%), Positives = 103/245 (42%), Gaps = 68/245 (27%)
Query: 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++ G E I K + DV+ +V++GE ++G++G+GK+T LR I EP SG
Sbjct: 21 LAKGKSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGK 80
Query: 154 VI---KAKSNM-----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLE 197
V+ + + M KI+ + Q F + RTV E AF +E+ G + E
Sbjct: 81 VLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLEN--VAFG--LEVQGVPRAE 136
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
R ++A E+ ++L+G L +
Sbjct: 137 REERAAEA----LELVG-------------------------------LE---GWEHKYP 158
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMV 310
S G Q R+ L + L DPD+LL+DE + LD D + L+ L K +V
Sbjct: 159 DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKT---IV 215
Query: 311 IISHD 315
I+HD
Sbjct: 216 FITHD 220
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 1e-11
Identities = 52/232 (22%), Positives = 111/232 (47%), Gaps = 51/232 (21%)
Query: 98 VKLENISKSYK---GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
VK +N++ +Y VL+DV++ + GE LVG +G+GK+T + ++ +P G V
Sbjct: 12 VKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV 71
Query: 155 I---KAKS-------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
+ K S + K++ + QE V +R++++ IA L+
Sbjct: 72 LLDGKPISQYEHKYLHSKVSLVGQE-PVLFARSLQD----------NIAYGLQSC----- 115
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
F+ ++ AQ + + +S+L G+ + G++ + S G
Sbjct: 116 --------------SFECVKEAAQKAHAHSF---ISEL--ASGYDTEVGEK-GSQLSGGQ 155
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG--YLGKQDVPMVIISH 314
+ R+++ + L+++P +L+LDE T+ LD ++ + ++ Y + +++I+H
Sbjct: 156 KQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAH 207
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 2e-11
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDR 316
S G + R++L + LL DP+LL+LDEPT+ LD ++ L K+ +++ SH
Sbjct: 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL 155
Query: 317 AFLDQLCTKIV 327
++LC ++
Sbjct: 156 EEAERLCDRVA 166
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 2e-11
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
N +L + GE +IGPNG GK+TL LI G KP G V+ ++
Sbjct: 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDI 68
|
Length = 250 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 2e-11
Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 30/135 (22%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489
N +L ++ GE IIGPNG GK+T++ +I G +P G VL G ++
Sbjct: 19 NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78
Query: 490 -------PNYFE-----QNQAEALDLDKTVLETVAE---AAEDWRIDDIKGLLGRCNFKA 534
P FE +N AL DK+V ++ A E RI+++ +G A
Sbjct: 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL----A 134
Query: 535 DMLDRKVSLLSGGEK 549
D DR LLS G+K
Sbjct: 135 DEADRLAGLLSHGQK 149
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 47/148 (31%), Positives = 57/148 (38%), Gaps = 39/148 (26%)
Query: 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN- 487
NL + R L + +L + GE AI+GPNG GKSTLLK + G P GEV L
Sbjct: 6 NLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPL 65
Query: 488 -------------VLPNYFEQNQAEALDLDKTVLETV----------AEAAEDWRIDDIK 524
VLP Q +L TV E V E ED RI
Sbjct: 66 NSWPPEELARHRAVLP------QNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAA-- 117
Query: 525 GLLGRCNFKADML---DRKVSLLSGGEK 549
+ D+ R LSGGE+
Sbjct: 118 ----QALAATDLSGLAGRDYRTLSGGEQ 141
|
Length = 259 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-11
Identities = 41/147 (27%), Positives = 59/147 (40%), Gaps = 35/147 (23%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL- 483
+ +NL +R LF+ + T+ GE I GPNG GK+TLL+++ GL +P GEV
Sbjct: 3 LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62
Query: 484 GEH-NVLPNYFEQN-----QAEALDLDKTVLE---------------TVAEAAEDWRIDD 522
GE + + Q + + T LE T+ EA
Sbjct: 63 GEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQV---- 118
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEK 549
GL G D V LS G++
Sbjct: 119 --GLAGL-------EDLPVGQLSAGQQ 136
|
Length = 209 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 39/160 (24%)
Query: 415 PERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474
++ S +V ++ + ++ + + + +LTI GE ++GP+GCGK+T+L+LI G E
Sbjct: 5 NKQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE 64
Query: 475 KPRGGEVLL-GE------------HNVLPNY--------FEQNQAEALDLDKT----VLE 509
P G ++L G+ + V +Y FE N A L + KT +
Sbjct: 65 TPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFE-NVAFGLRMQKTPAAEITP 123
Query: 510 TVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
V EA +++ + RK LSGG++
Sbjct: 124 RVMEALRMVQLE-------------EFAQRKPHQLSGGQQ 150
|
Length = 375 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 2e-11
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 13/105 (12%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
S ++V ++ + F +R +F+ +LT+ RG+ TAI+GP+G GK+TLL+LI G P G
Sbjct: 3 SVANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHG 62
Query: 480 EVLLGEHNVLPNYFEQN------------QAEALDLDKTVLETVA 512
E+L N+ P Q+ AL D V + VA
Sbjct: 63 EILFDGENI-PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVA 106
|
Length = 269 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 50/201 (24%), Positives = 75/201 (37%), Gaps = 39/201 (19%)
Query: 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
+++ +S Y L DV++ V+ G V L+G NGAGK+T ++ G +
Sbjct: 1 ALEVAGLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI-- 58
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL--MG 214
+A + R R L R+ + D+DL
Sbjct: 59 -----SVA------GHDLRRAPRA--------------ALARLGVVFQQPTLDLDLSVRQ 93
Query: 215 RLLDEFDL--LQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
L L L R + L A+ LG D+ V + G + R+ + +
Sbjct: 94 NLRYHAALHGLSRAEARARIAELLAR-------LGLAERADDK-VRELNGGHRRRVEIAR 145
Query: 273 ILLQDPDLLLLDEPTNHLDLD 293
LL P LLLLDEPT LD
Sbjct: 146 ALLHRPALLLLDEPTVGLDPA 166
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 2e-11
Identities = 62/249 (24%), Positives = 109/249 (43%), Gaps = 65/249 (26%)
Query: 98 VKLENISKSY----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+KL NI+K + K + L +V+ V G+ G++G +GAGK+T +R + E P SG+
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 154 VI---------------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER 198
VI KA+ + + F Q F + SRTV +A LE
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIF--QHFNLLSSRTVFG----------NVALPLE- 108
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
L + D + KV++L+ +G D D +
Sbjct: 109 ------------------------LDNTPK----DEIKRKVTELLALVGLG-DKHDSYPS 139
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISH 314
+ S G + R+++ + L +P +LL DE T+ LD T +E L+ + + +++I+H
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITH 199
Query: 315 DRAFLDQLC 323
+ + ++C
Sbjct: 200 EMDVVKRIC 208
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLL-FNR 442
A A K+ +L+ F R Q FP+ + ++N+ F Y+D
Sbjct: 291 TAQVAFNKIAKLELAPYKAD-FPRPQ---AFPDW-----KTLELRNVRFAYQDNAFHVGP 341
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
NLTI+RGE +IG NG GKSTL L+ GL +P+ GE+LL
Sbjct: 342 INLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382
|
Length = 546 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 3e-11
Identities = 51/181 (28%), Positives = 72/181 (39%), Gaps = 30/181 (16%)
Query: 392 LERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI--KNLEFGYED-RLLFNRANLTIE 448
ER+ E P P G G T+ ++L GY + + +L +
Sbjct: 304 AERIVEVLDAAGPVAEGS----APAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLP 359
Query: 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL----------GEHNVLPNYFEQNQA 498
GE+ AI+GP+G GKSTLL + GL P GEV L E + Q+
Sbjct: 360 PGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQD-- 417
Query: 499 EALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNF------KADMLDRKV----SLLSGGE 548
A D TV E + A D +++ L R D LD + + LSGGE
Sbjct: 418 -AHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGE 476
Query: 549 K 549
+
Sbjct: 477 R 477
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 3e-11
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 17/106 (16%)
Query: 387 SAEKKLERLQEEEQI---EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY-EDRLLFNR 442
+AE+ E L EE ++ P + I F +N+ F Y + +
Sbjct: 301 AAERLFELLDEEPEVEDPPDPLKDTIGSIEF-------------ENVSFSYPGKKPVLKD 347
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
+ +IE GEK AI+GP+G GKSTL+KL++ L P GE+L+ ++
Sbjct: 348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDI 393
|
Length = 567 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 3e-11
Identities = 47/204 (23%), Positives = 79/204 (38%), Gaps = 61/204 (29%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--- 155
++ N++ Y +L+ V+ EV KGE ++G NG GKTT L+ + G SG++
Sbjct: 2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDG 61
Query: 156 ----KAKSNMK----IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
K + + IA++ Q E+ TV E ++ +
Sbjct: 62 EDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLA-----------ALPRRSRKI 110
Query: 208 DDMDLMGRLLDEF----DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
D + + F ++L R+ GD S G
Sbjct: 111 PD-----EIYELFPVLKEMLGRRG-------------------------GD-----LSGG 135
Query: 264 WQMRMSLGKILLQDPDLLLLDEPT 287
Q ++++ + L+ P LLLLDEPT
Sbjct: 136 QQQQLAIARALVTRPKLLLLDEPT 159
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 3e-11
Identities = 47/213 (22%), Positives = 94/213 (44%), Gaps = 52/213 (24%)
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178
E+ GE +G++G NG GKTT ++++AG +PD G+ K + K ++S +++ TV
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDG----TV 418
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238
+ SA + A S+ +++ L NL+
Sbjct: 419 EDLLRSAIRS-------------AFGSSYFKTEIVKPL--------------NLE----- 446
Query: 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD----T 294
L+ +R V S G R+++ L ++ DL LLDEP+ +LD++
Sbjct: 447 --DLL----------ERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIV 494
Query: 295 IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
+ + ++ + +++ HD +D + +++
Sbjct: 495 AKVIRRFIENNEKTALVVDHDIYMIDYVSDRLI 527
|
Length = 591 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 3e-11
Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 54/239 (22%)
Query: 98 VKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+K EN+ K Y+ VLK V+ + KGE V +VG +G+GK+T L ++ G + P SG
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREE-------FMSAFKEEMEIAGKLERVQKALESA 206
V+ F Q +S R + F+ F + LE V
Sbjct: 62 VL---------FNGQSLS-KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENV------- 104
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDT---LDAKVSKLMPELGFTADDGDRLVASFSSG 263
M L+ + + + K +A + L+ +++ EL S G
Sbjct: 105 -----AMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSEL--------------SGG 145
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318
+ R+++ + L+ P L+L DEPT +LD + + + + + + ++++HD
Sbjct: 146 ERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL 204
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 4e-11
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +L Y + + + +L +++GE +GPNG GK+T +K+I+GL KP GE+
Sbjct: 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFD 60
Query: 485 EHNVLPNYFEQNQAEAL 501
+ N + AL
Sbjct: 61 GKSYQKNIEALRRIGAL 77
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 4e-11
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 389 EKKLERLQE--EEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE--DRLLFNRAN 444
E L RL + ++ + ++ E V ++N+ FGY + L +
Sbjct: 440 EGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFS 499
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
LT++ G++ A++G +G GKST+ KL+ GL +P GE+L
Sbjct: 500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 4e-11
Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 48/220 (21%)
Query: 77 FENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGK 136
E K N + SS + + N+ G VLK++ +++KGE + + G G+GK
Sbjct: 21 LEKAKQENN--DRKHSSDDNNLFFSNLC--LVGAPVLKNINLKIEKGEMLAITGSTGSGK 76
Query: 137 TTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196
T+ L +I G+ EP G K K + +I+F SQ F M T++E
Sbjct: 77 TSLLMLILGELEPSEG---KIKHSGRISFSSQ-FSWIMPGTIKENI-------------- 118
Query: 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT--ADDGD 254
+ G DE+ R V L+ ++K PE T + G
Sbjct: 119 ---------------IFGVSYDEY----RYKSVVKACQLEEDITKF-PEKDNTVLGEGGI 158
Query: 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
L S G + R+SL + + +D DL LLD P +LD+ T
Sbjct: 159 TL----SGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 194
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 5e-11
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++N+ + D + + +L I GE A++GP+G GK+TLL+LI GLE+P G +L G
Sbjct: 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFG 62
Query: 485 EHNV 488
+
Sbjct: 63 GEDA 66
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 6e-11
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 411 KIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
+ G S + I + + + + RGE+ +IG NG GKSTLL+L+
Sbjct: 9 SYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLL 68
Query: 471 MGLEKPRGGEV 481
G+ P G V
Sbjct: 69 AGIYPPDSGTV 79
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 6e-11
Identities = 43/147 (29%), Positives = 61/147 (41%), Gaps = 26/147 (17%)
Query: 427 IKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRGGEVLL 483
IK+L E + + NLT++ GE AI+GPNG GKSTL IMG + GE+L
Sbjct: 6 IKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILF 65
Query: 484 GEHNVL---PNYFE----------QNQAE-----ALDLDKTVLETVAEAAEDWR--IDDI 523
++L P+ E Q E D + + A I ++
Sbjct: 66 DGEDILELSPD--ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKEL 123
Query: 524 KGLLGRCNFKADMLDRKVSL-LSGGEK 549
K + L+R V+ SGGEK
Sbjct: 124 KEKAELLGLDEEFLERYVNEGFSGGEK 150
|
Length = 251 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 6e-11
Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 46/173 (26%)
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178
+ + E +G++G NG GKTT ++++AG +PD G++ +++ Q + TV
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIE--IELDTVSYKPQYIKADYEGTV 78
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238
R+ S + ++ L +
Sbjct: 79 RDLLSS-------------ITKDFYTHPYFKTEIAKPL---------------------Q 104
Query: 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ +++ DR V S G R+++ L +D D+ LLDEP+ +LD
Sbjct: 105 IEQIL----------DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 7e-11
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 425 VTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ +N+ F Y E + + N +I+ GE AI+GP G GK+TL+ L+M P+ G++L+
Sbjct: 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62
Query: 484 GEHNV 488
++
Sbjct: 63 DGIDI 67
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 8e-11
Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 44/218 (20%)
Query: 77 FENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGK 136
FE K +NK + G+ N S VLK+++++++KG+ + + G G+GK
Sbjct: 410 FEKIKQNNK--ARKQPNGDDGLFFSNFS--LYVTPVLKNISFKLEKGQLLAVAGSTGSGK 465
Query: 137 TTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196
++ L +I G+ EP G K K + +I+F Q M T+++
Sbjct: 466 SSLLMMIMGELEPSEG---KIKHSGRISFSPQ-TSWIMPGTIKDNI-------------- 507
Query: 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256
+ G DE+ R + L+ ++ + +G
Sbjct: 508 ---------------IFGLSYDEY----RYTSVIKACQLEEDIALFPEKDKTVLGEGG-- 546
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ S G + R+SL + + +D DL LLD P HLD+ T
Sbjct: 547 -ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT 583
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 9e-11
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 25/134 (18%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--PN 491
YE L +L + GE AI+GP+G GKSTLL LI G +P G + + + +
Sbjct: 8 YEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAP 67
Query: 492 Y-------FEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGRCNFKAD 535
Y F++N L TV + + A + ++ D +G AD
Sbjct: 68 YQRPVSMLFQENN---LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVG----IAD 120
Query: 536 MLDRKVSLLSGGEK 549
LDR LSGG++
Sbjct: 121 YLDRLPEQLSGGQR 134
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 426 TIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
++NL Y + + +L+I GE A+IGP+G GKSTLL+ + GL +P G VL+
Sbjct: 2 EVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLID 61
Query: 485 EHNV 488
++
Sbjct: 62 GTDI 65
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 1e-10
Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 24/140 (17%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
++NL +++ L N +L +ERG+ I+GP G GKS LL+ I G KP G++LL
Sbjct: 3 VENLSKDWKEFKLKN-VSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGK 61
Query: 487 NV--LP------NYFEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGR 529
++ LP +Y QN AL TV + +A + + ++ +I +LG
Sbjct: 62 DITNLPPEKRDISYVPQNY--ALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLG- 118
Query: 530 CNFKADMLDRKVSLLSGGEK 549
+L+RK LSGGE+
Sbjct: 119 ---IDHLLNRKPETLSGGEQ 135
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 1e-10
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 30/142 (21%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
+ L F Y R + + T+ G A++GPNG GKSTL L+ L + G++ + H
Sbjct: 4 VAGLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGH 63
Query: 487 NV----------LPNYFEQNQAEALDLDKTVLETV-----------AEAAEDWRIDDIKG 525
++ L F+Q LDLD +V + + AEA RI ++
Sbjct: 64 DLRRAPRAALARLGVVFQQP---TLDLDLSVRQNLRYHAALHGLSRAEARA--RIAELLA 118
Query: 526 LLGRCNFKADMLDRKVSLLSGG 547
LG A+ D KV L+GG
Sbjct: 119 RLGL----AERADDKVRELNGG 136
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 1e-10
Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 50/196 (25%)
Query: 108 KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVI-------KA 157
K +L DV+ V+ G+ + ++G +G+GKTT L I+G+ E SG ++
Sbjct: 18 KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD 77
Query: 158 KSNMKIAFLSQEFEVSMSRTVREE--FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+ +A++ Q+ + TVRE + + + + R
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAILR-------------------------LPR 112
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
+ +R + D ++ G LV S G + R+S+ LL
Sbjct: 113 KSSDAIRKKRVEDVLLRDLALTRI-------------GGNLVKGISGGERRRVSIAVQLL 159
Query: 276 QDPDLLLLDEPTNHLD 291
DP +L+LDEPT+ LD
Sbjct: 160 WDPKVLILDEPTSGLD 175
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 384 RASSAEKKL-ERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE---DRLL 439
RA+ A ++L E LQ E I+ P K + + P RG + + + F Y D+
Sbjct: 303 RAAGAAERLIELLQAEPDIKAPAHPKTLPV--PLRGE-----IEFEQVNFAYPARPDQPA 355
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
+ NLT+ GE A++GP+G GKSTL +L++ P+ G +LL ++
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDL 404
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 1e-10
Identities = 63/230 (27%), Positives = 94/230 (40%), Gaps = 65/230 (28%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L +SK Y TVL + + G+ V +VG +G GK+T LR++AG E P +G +
Sbjct: 15 LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL----- 69
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM---GRL 216
+AG L A +D LM RL
Sbjct: 70 --------------------------------LAG-----TAPLAEAREDTRLMFQDARL 92
Query: 217 L------DEFDL-LQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
L D L L+ + + L L A +G AD + A+ S G + R++
Sbjct: 93 LPWKKVIDNVGLGLKGQWRDAALQALAA--------VGL-ADRANEWPAALSGGQKQRVA 143
Query: 270 LGKILLQDPDLLLLDEPTNHLD-LDTIEW---LEGYLGKQDVPMVIISHD 315
L + L+ P LLLLDEP LD L IE +E + +++++HD
Sbjct: 144 LARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193
|
Length = 257 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 423 SVVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ + Y R + T+ GE+ A++GP+G GKSTLL L++G P G +
Sbjct: 320 PSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379
Query: 482 LLG 484
+
Sbjct: 380 AVN 382
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 31/136 (22%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG---------EHNVL-- 489
N + +++ GE +IGPNG GK+TL+ +I G +P+ GEVL EH +
Sbjct: 22 NDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81
Query: 490 --------PNYFE-----QNQAEALDLDKTVLETV---AEAAEDWRIDDIKGLLGRCNFK 533
P FE +N AL+ DK+V ++ A E RID++ +G
Sbjct: 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGL---- 137
Query: 534 ADMLDRKVSLLSGGEK 549
D DR +LLS G+K
Sbjct: 138 GDERDRLAALLSHGQK 153
|
Length = 249 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
VT++N+ Y D ++ NL I GE +GP+GCGKSTLL++I GLE G++ +G
Sbjct: 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIG 63
Query: 485 E 485
E
Sbjct: 64 E 64
|
Length = 369 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-10
Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 50/207 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++ EN++ Y +L D++ + G+ L+G NG GK+T L+ A P SG V
Sbjct: 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLG 62
Query: 155 ---IKAKSN----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
I S+ ++A L Q TVRE + A+ G+ +
Sbjct: 63 DKPISMLSSRQLARRLALLPQHHLTPEGITVRE--LVAY-------GRSPWL-------- 105
Query: 208 DDMDLMGRLLDEFD--LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
L GRL E D + + + ++ L DR + S G +
Sbjct: 106 ---SLWGRLSAE-DNARVNQAMEQTRINHL-----------------ADRRLTDLSGGQR 144
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDL 292
R L +L QD ++LLDEPT +LD+
Sbjct: 145 QRAFLAMVLAQDTPVVLLDEPTTYLDI 171
|
Length = 255 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 60/261 (22%), Positives = 101/261 (38%), Gaps = 72/261 (27%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++L I+ Y L D+T + +GE + L+G +GAGK++ LR++ E P SG + A
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 158 KSNM---------KIAFLSQEFEVSM---------SRTVREEFMSAFKEEMEIAGKLERV 199
++ I L + V M TV++ + A + G +
Sbjct: 63 GNHFDFSKTPSDKAIRELRR--NVGMVFQQYNLWPHLTVQQNLIEA---PCRVLGLSK-- 115
Query: 200 QKALESAVDDMDLMGRL-LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
+AL A L+ RL L + DR
Sbjct: 116 DQALARA---EKLLERLRLKPY--------------------------------ADRFPL 140
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVI 311
S G Q R+++ + L+ +P +LL DEPT LD + I L + VI
Sbjct: 141 HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE----TGITQVI 196
Query: 312 ISHDRAFLDQLCTKIVETEMG 332
++H+ + +++V E G
Sbjct: 197 VTHEVEVARKTASRVVYMENG 217
|
Length = 242 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 43/149 (28%), Positives = 63/149 (42%), Gaps = 25/149 (16%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR--GGEVLL 483
IK+L ED+ + NLT+++GE AI+GPNG GKSTL K I G G +L
Sbjct: 2 KIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILF 61
Query: 484 GEHNVLPNYFE-----------QNQAE-----ALDLDKTVLETVAEAAEDWRID------ 521
++L + Q E L+ ++ L A + +D
Sbjct: 62 KGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLK 121
Query: 522 DIKGLLGRCNFKADMLDRKVSL-LSGGEK 549
+K L + L+R V+ SGGEK
Sbjct: 122 LLKAKLALLGMDEEFLNRSVNEGFSGGEK 150
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 25/232 (10%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++++ I K++ GV L + EV+ GE VGL G NGAGK+T ++I+ SG
Sbjct: 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKIL-------SGVYPHG 54
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+ +I + + S R + +E+ + +L + +++ L G +
Sbjct: 55 TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLG--NEITLPGGRM 112
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
++ + +A+ L+ EL AD+ R V + G Q + + K L +
Sbjct: 113 A-YNAMYLRAK------------NLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQ 159
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKI 326
LL+LDEP++ L E L L V V ISH + +C I
Sbjct: 160 ARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTI 211
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-10
Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 47/225 (20%)
Query: 100 LENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ ++S SY K + L+DV+ + GE V ++G +G GKTT L +IAG P G++
Sbjct: 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLN 65
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+I E V +++ + + +L ++KA
Sbjct: 66 --GRRIEGPGAERGVVFQNEALLPWLNV-IDNVAFGLQLRGIEKA--------------- 107
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
QR+ A +++ +G + + S G + R+ + + L +
Sbjct: 108 ------QRREIA----------HQMLALVGL-EGAEHKYIWQLSGGMRQRVGIARALAVE 150
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGYL-------GKQDVPMVIISHD 315
P LLLLDEP LD T E ++ L GKQ +++I+HD
Sbjct: 151 PQLLLLDEPFGALDALTREQMQELLLDLWQETGKQ---VLLITHD 192
|
Length = 259 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 79/414 (19%), Positives = 161/414 (38%), Gaps = 100/414 (24%)
Query: 99 KLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKT----TQLRIIAGQEEPD 150
+ N+S ++ V +K ++++++ GE + LVG +G+GK+ + L ++ P
Sbjct: 8 SIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL-----PS 62
Query: 151 SGNVIKAKSNMKIAFLSQEFEVSMSRT---VREEFMSA-FKEEMEIAGKLERVQKALESA 206
+ S I F ++ + R VR + F+E M L + K L
Sbjct: 63 PAAAHPSGS---ILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV 119
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF----SS 262
+ R + ++ A+ +L+ +G + ++ + ++ S
Sbjct: 120 L-----------------RLHRGLSRAAARARALELLELVGI--PEPEKRLDAYPHELSG 160
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHD 315
G + R+ + L +PDLL+ DEPT LD LD ++ L+ LG + ++ I+HD
Sbjct: 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELG---MAILFITHD 217
Query: 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINR 375
+ + ++ YV++ +E+ + T+ L+
Sbjct: 218 LGIVRKFADRV-----------------YVMQHGEIVETGTTETLFAAPQHPYTRKLLAA 260
Query: 376 LGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG----RSGRSVVTIKNLE 431
+G A LE + +++ FP +G R+ + + +
Sbjct: 261 EPSGDPPPLPEDAPVLLE-------------VEDLRVWFPIKGGFLRRTVDHLRAVDGI- 306
Query: 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+LT+ RG+ ++G +G GKSTL ++ L +G G+
Sbjct: 307 ------------SLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQ 348
|
Length = 534 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 3e-10
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 15/138 (10%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++NL Y + + +LT+ G ++GPNG GK+TL++++ L P G + +
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59
Query: 485 EHNVL--PNYFEQN-----QAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGRCN 531
+VL P + Q + + TV E + A I + +L N
Sbjct: 60 GQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVN 119
Query: 532 FKADMLDRKVSLLSGGEK 549
D +K+ LSGG +
Sbjct: 120 L-GDRAKKKIGSLSGGMR 136
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 3e-10
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 413 RFPERGRSGRSVVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKL 469
+ E+ S + +K L G + + I +GE+ IIG NG GKSTLLKL
Sbjct: 15 IYHEKSYSLKK--RLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKL 72
Query: 470 IMGLEKPRGGEV 481
I G+ KP G+V
Sbjct: 73 IAGIYKPTSGKV 84
|
Length = 249 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-10
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 27/135 (20%)
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP------ 490
RL+ + ++T G T ++GPNG GKSTLL+L+ G +P G V L ++
Sbjct: 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR 73
Query: 491 ----NYFEQNQAEALDLDKTVLETVA------------EAAEDWRIDDIKGLLGRCNFKA 534
EQ+ A+ L TV + VA ++ D + D L R +
Sbjct: 74 ARRVALVEQDSDTAVPL--TVRDVVALGRIPHRSLWAGDSPHDAAVVD--RALARTEL-S 128
Query: 535 DMLDRKVSLLSGGEK 549
+ DR +S LSGGE+
Sbjct: 129 HLADRDMSTLSGGER 143
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 3e-10
Identities = 42/141 (29%), Positives = 59/141 (41%), Gaps = 26/141 (18%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+ NL Y + +L + +GE T ++G NG GK+TLLK +MGL + G + L
Sbjct: 2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDG 61
Query: 486 HNV--LP---------NYFEQNQAEALDLDKTV---LETVAEA---AEDWRIDDIKGLLG 528
++ LP Y Q + L TV L T A D+I L
Sbjct: 62 EDITKLPPHERARAGIAYVPQGREIFPRL--TVEENLLTGLAALPRRSRKIPDEIYEL-- 117
Query: 529 RCNFKA--DMLDRKVSLLSGG 547
F +ML R+ LSGG
Sbjct: 118 ---FPVLKEMLGRRGGDLSGG 135
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 3e-10
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + + Y +R + N+ +L I G+ A++G +GCGKSTLL+L+ GLE P GE+L G
Sbjct: 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG 72
|
Length = 257 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 29/155 (18%)
Query: 415 PERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474
+ ++ ++ I+NL ++ + + +LTI +GE A++G +GCGKSTLL+++ G E
Sbjct: 10 AKTRKALTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE 69
Query: 475 KPRGGEVLLGEHNV--LPNY------------------FEQNQAEALDLDKTVLETVAEA 514
+P G+++L ++ +P Y EQN A L DK + +A
Sbjct: 70 QPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDK-----LPKA 124
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
R++++ GL+ F RK LSGG++
Sbjct: 125 EIASRVNEMLGLVHMQEFAK----RKPHQLSGGQR 155
|
Length = 377 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 3e-10
Identities = 48/205 (23%), Positives = 95/205 (46%), Gaps = 46/205 (22%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ E++ YK G +L +++ +K GE VG+VG +G+GK+T ++I P++G V+
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 156 KAKSNMKI---AFLSQEFEVSM------SRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
++ + A+L ++ V + +R++R+ A + +ERV +A
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALA-----DPGMSMERVIEA---- 111
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+L D + +PE G+ G++ A S G +
Sbjct: 112 -------AKLAGAHDFISE-----------------LPE-GYDTIVGEQ-GAGLSGGQRQ 145
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R+++ + L+ +P +L+ DE T+ LD
Sbjct: 146 RIAIARALIHNPRILIFDEATSALD 170
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 3e-10
Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 48/229 (20%)
Query: 102 NISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
N+ K Y+ VL +V++ + +GE + +VG +G+GK+T L ++ G + P SG+VI
Sbjct: 10 NLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVI-- 67
Query: 158 KSNMKIAFLSQEFEVSMSRTVREE-------FMSAFKEEMEIAGKLERVQKALESAVDDM 210
F Q +S + E F+ F + LE V L
Sbjct: 68 -------FNGQPMS-KLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPL------- 112
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
L+G+ ++ A+ +++ +++ +G R + S G + R+++
Sbjct: 113 -LIGK--------KKPAEI------NSRALEMLAAVGLEHRANHR-PSELSGGERQRVAI 156
Query: 271 GKILLQDPDLLLLDEPTNHLDL---DTIEWLEGYLG-KQDVPMVIISHD 315
+ L+ +P L+L DEPT +LD D+I L G L Q ++++HD
Sbjct: 157 ARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205
|
Length = 233 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 4e-10
Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 31/231 (13%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+ NISKS+ GV L +V +V+ L+G NGAGK+T L+ + G + DSG+++
Sbjct: 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSIL---- 56
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
F +E + S+ E +S +E+ + L+R S +D+M L GR
Sbjct: 57 -----FQGKEIDFKSSKEALENGISMVHQELNLV--LQR------SVMDNMWL-GR---- 98
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM-SLGKILLQDP 278
K V+ D + + EL D + VA+ S QM+M + K +
Sbjct: 99 ---YPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-VATLSVS-QMQMIEIAKAFSYNA 153
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326
++++DEPT+ L + L + K + +V ISH + QLC +I
Sbjct: 154 KIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEI 204
|
Length = 491 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 5e-10
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 23/144 (15%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+TI+N+ Y +++ + +L I +G T+IIGPNG GKSTLL ++ L K GE+ +
Sbjct: 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITID 61
Query: 485 EHNVLPNYFEQNQAEALDLDK---------TVLETVA----------EAAEDWRIDDIKG 525
+ + + A+ L + K TV + V ED RI I
Sbjct: 62 GLEL-TSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRI--INE 118
Query: 526 LLGRCNFKADMLDRKVSLLSGGEK 549
+ + + D+ DR + LSGG++
Sbjct: 119 AIEYLHLE-DLSDRYLDELSGGQR 141
|
Length = 252 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 5e-10
Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 39/236 (16%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIK 156
K++++ S + +LK V VKKGE ++G NG+GK+T + IAG E SG ++
Sbjct: 2 KIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILF 61
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLERVQKALES-----AVDD 209
++ E+ R AF+ EI G LE ++ AL + +
Sbjct: 62 KGQDL--------LELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEP 113
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+DL+ D LL+ K + +D S + FS G + R
Sbjct: 114 LDLL----DFLKLLKAKLALLGMDEEFLNRS---------------VNEGFSGGEKKRNE 154
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322
+ ++ L +P L +LDE + LD+D ++ + + + D +II+H + L+ +
Sbjct: 155 ILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYI 210
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 5e-10
Identities = 51/237 (21%), Positives = 107/237 (45%), Gaps = 22/237 (9%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
++ K Y VLK V+ + G+ + ++G +G+GK+T LR I E+P G+++
Sbjct: 10 DLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQT- 68
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+++ R + A K ++ + ++ L +L + +
Sbjct: 69 ----------INLVRDKDGQLKVADKNQLRL------LRTRLTMVFQHFNLWSHMTVLEN 112
Query: 222 LLQRKAQAVNLDTLDAK--VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279
+++ Q + L +A+ K + ++G + S G Q R+S+ + L +P+
Sbjct: 113 VMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPE 172
Query: 280 LLLLDEPTNHLDLDTI-EWLE--GYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333
+LL DEPT+ LD + + E L L ++ MV+++H+ F + + ++ G
Sbjct: 173 VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229
|
Length = 257 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 5e-10
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 420 SGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
SG + + + F Y L+ + +L IE GE AI+GP+G GKSTLL+L++G E P
Sbjct: 449 SGA--IEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE 506
Query: 478 GGEVL 482
G V
Sbjct: 507 SGSVF 511
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 5e-10
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ +NL ++R+LF+ + T+ GE I GPNG GK++LL+++ GL +P GEVL
Sbjct: 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW 60
|
Length = 204 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 5e-10
Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 26/148 (17%)
Query: 425 VTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ KN+ F Y R + +LTI G+ A++G +GCGKST++ L+ P GE+
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 482 LLGEHNVL-----------------PNYFEQNQAE--ALDLDKTVLETVAEAAEDWRIDD 522
LL ++ P F+ AE E V EAA+ I D
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 523 -IKGLLGRCNFKADMLDRKVSLLSGGEK 549
I L + ++ + S LSGG+K
Sbjct: 121 FIMSLPDGYD---TLVGERGSQLSGGQK 145
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 6e-10
Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 44/207 (21%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
G + K++ + + ++ +VG NG GK+T L++I+G+ +P SG V +
Sbjct: 521 GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFR------------ 568
Query: 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228
S VR M+ F + VD +DL L + R
Sbjct: 569 ------SAKVR---MAVFSQHH----------------VDGLDLSSNPLL---YMMRCFP 600
Query: 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTN 288
V + K+ + G T + + + + S G + R++ KI + P +LLLDEP+N
Sbjct: 601 GV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSN 656
Query: 289 HLDLDTIEWLEGYLGKQDVPMVIISHD 315
HLDLD +E L L ++++SHD
Sbjct: 657 HLDLDAVEALIQGLVLFQGGVLMVSHD 683
|
Length = 718 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 6e-10
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ I N++ + + +L I+ GE A++GP+G GKSTLL++I GLE P G + L
Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62
|
Length = 345 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 6e-10
Identities = 51/258 (19%), Positives = 103/258 (39%), Gaps = 66/258 (25%)
Query: 99 KLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+++N+S S+ V + V++E+KKGE +G+VG +G+GK+ + I G P
Sbjct: 3 EVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMG-LLPKPNAR 61
Query: 155 IKAKS----NMKIAFLSQEF-------EVSM-----------SRTVREEFMSAFKEEMEI 192
I + LS++ E++M T+ ++ + +
Sbjct: 62 IVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG 121
Query: 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
K E ++A+E LL+ V + + + K P
Sbjct: 122 LSKKEAKERAIE-----------------LLEL----VGIPDPE-RRLKSYPH------- 152
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVP 308
S G + R+ + L +P LL+ DEPT LD+ ++ L+ ++
Sbjct: 153 ------ELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTA 206
Query: 309 MVIISHDRAFLDQLCTKI 326
+++I+HD + ++ ++
Sbjct: 207 LILITHDLGVVAEIADRV 224
|
Length = 316 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 6e-10
Identities = 58/249 (23%), Positives = 120/249 (48%), Gaps = 40/249 (16%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
V+ +++K + +TVL + + V GEKV L+G +G+GK+T LRI+ E D G + ++
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL-----ESAVDDMD 211
+ + + + + +R ++ K+ V ++ ++ +D++
Sbjct: 61 GEQLYHMPGRNGPLVPADEKHLR-----------QMRNKIGMVFQSFNLFPHKTVLDNVT 109
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
L+ L +A+A + + +L+ +G AD D + A S G Q R+++
Sbjct: 110 EAPVLV----LGMARAEA------EKRAMELLDMVGL-ADKADHMPAQLSGGQQQRVAIA 158
Query: 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD----RAFLDQLC 323
+ L P ++L DE T+ LD + + + + + D+ M++++H+ R F D++C
Sbjct: 159 RALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVC 218
Query: 324 ----TKIVE 328
+IVE
Sbjct: 219 FFDKGRIVE 227
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 6e-10
Identities = 50/219 (22%), Positives = 84/219 (38%), Gaps = 56/219 (25%)
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV-----REEF 182
L G +G+GKT+ + +IAG PD G + L+ V + + +
Sbjct: 29 LFGPSGSGKTSLINMIAGLTRPDEGRIE----------LNGRVLVDAEKGIFLPPEKRRI 78
Query: 183 MSAFKE-----EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237
F++ + G L S D + LL LL R
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYGMWK--SMRAQFDQLVALLGIEHLLDR------------ 124
Query: 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT--- 294
P + S G + R+++G+ LL P+LLL+DEP LDL
Sbjct: 125 -----YPG-------------TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRE 166
Query: 295 -IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332
+ +LE + ++P++ +SH + +L ++V E G
Sbjct: 167 ILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENG 205
|
Length = 352 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 7e-10
Identities = 60/239 (25%), Positives = 96/239 (40%), Gaps = 63/239 (26%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQ----LRIIAGQEEPDSGNVIKAKSNMKIAFL 166
V+K++++ ++ GE +GLVG +G+GK+T LR+I Q E I F
Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGE--------------IWFD 345
Query: 167 SQEFEVSMSRT---VREEFMSAFKE-----------EMEIAGKLERVQKALESAVDDMDL 212
Q R VR F++ I L Q L +A
Sbjct: 346 GQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAA------ 399
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
QR+ Q V +M E+G + R A FS G + R+++ +
Sbjct: 400 -----------QREQQ----------VIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIAR 438
Query: 273 ILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
L+ P L++LDEPT+ LD + L+ K + + ISHD + LC +++
Sbjct: 439 ALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVI 497
|
Length = 529 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 7e-10
Identities = 46/141 (32%), Positives = 63/141 (44%), Gaps = 21/141 (14%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-GEH 486
+ L GY + + I G TAIIGPNGCGKSTLL+ + L P G V L GEH
Sbjct: 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEH 70
Query: 487 NVLPNYFEQNQAEALDL---------DKTVLETVAEAA-------EDWRIDDIKGLLG-- 528
+ +Y + A + L D TV E VA WR +D + +
Sbjct: 71 --IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAM 128
Query: 529 RCNFKADMLDRKVSLLSGGEK 549
+ + D+ V LSGG++
Sbjct: 129 QATGITHLADQSVDTLSGGQR 149
|
Length = 265 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 8e-10
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGE 485
KN+ + + + + GE AI+GPNG GK+TLL L+ G P G+V LLG
Sbjct: 35 KNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGR 93
|
Length = 257 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 8e-10
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 28/150 (18%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +KN+ + D A +L++ +GE IIG +G GKSTL++ I GLE+P G
Sbjct: 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG 60
Query: 480 EVLL-GEHNVLPNYFEQNQAEA----------LDLDKTVLETVAEAAEDW---------R 519
VL+ G L + E +A L +TV E VA E R
Sbjct: 61 SVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEER 120
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+ ++ L+G D D + LSGG+K
Sbjct: 121 VLELLELVGL----EDKADAYPAQLSGGQK 146
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 8e-10
Identities = 55/247 (22%), Positives = 101/247 (40%), Gaps = 54/247 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
+ L+ + Y+ + + D+ V GE V ++G +GAGK+T L +IAG EP SG++ +
Sbjct: 1 LALDKVRYEYEHLPMEFDLN--VADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVN 58
Query: 157 AKSNMKIA-------FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
+S+ +A L QE + TVR+ + KL Q+
Sbjct: 59 DQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL----KLNAEQQEKVVDA-- 112
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
AQ V + D DRL S G + R++
Sbjct: 113 -----------------AQQVGIA-----------------DYLDRLPEQLSGGQRQRVA 138
Query: 270 LGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTK 325
L + L++ +LLLDEP + LD + + ++ ++ +++++H + + ++
Sbjct: 139 LARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQ 198
Query: 326 IVETEMG 332
I G
Sbjct: 199 IAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 8e-10
Identities = 38/127 (29%), Positives = 53/127 (41%), Gaps = 26/127 (20%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG------------EHNVLPN 491
N ERGE A++G NG GKSTLL + GL +P+ G VL+ E
Sbjct: 12 NFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVG 71
Query: 492 YFEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGRCNFKADMLDRKVS 542
Q+ + L V + VA EA + R+ + +G + +R
Sbjct: 72 LVFQDPDDQL-FAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLR----ERPTH 126
Query: 543 LLSGGEK 549
LSGGEK
Sbjct: 127 CLSGGEK 133
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 8e-10
Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 49/195 (25%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS---------GNVIKAKSNM 161
+LK+V+ K GE + ++G +GAGKTT + +A + G I AK
Sbjct: 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMR 98
Query: 162 KIAFLSQEFEVSM-SRTVREE--FMSAFK--EEMEIAGKLERVQKALESAVDDMDLMGRL 216
I+ Q+ ++ + + TVRE F + + + K ERV + L+ + L
Sbjct: 99 AISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQ----ALGL---- 150
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
RK +T G V S G + R++ LL
Sbjct: 151 --------RKCA----NTR-------------IGVPGR--VKGLSGGERKRLAFASELLT 183
Query: 277 DPDLLLLDEPTNHLD 291
DP LL DEPT+ LD
Sbjct: 184 DPPLLFCDEPTSGLD 198
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 9e-10
Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 37/128 (28%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-------------VLP 490
+L + GE ++GP+GCGKSTLL+++ GLE+ GE+ +G V
Sbjct: 24 DLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQ 83
Query: 491 NY-------FEQNQAEALD---LDKTVLET-VAEAAEDWRIDDIKGLLGRCNFKADMLDR 539
NY +N A L + K +E VAEAA RI ++ +LDR
Sbjct: 84 NYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAA---RILEL----------EPLLDR 130
Query: 540 KVSLLSGG 547
K LSGG
Sbjct: 131 KPRELSGG 138
|
Length = 356 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-09
Identities = 60/234 (25%), Positives = 102/234 (43%), Gaps = 42/234 (17%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ + +S Y + L +V+ + +GE V L+G NGAGKTT L + G SG ++
Sbjct: 6 LSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIV-- 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
F ++ ++ +T + +E + I + RV + V++ MG
Sbjct: 64 -------FDGKD--ITDWQTAK-----IMREAVAIVPEGRRVFSRM--TVEENLAMGGFF 107
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
E D Q + V +L P L + + + S G Q +++G+ L+
Sbjct: 108 AERDQFQERI---------KWVYELFPRL---HERRIQRAGTMSGGEQQMLAIGRALMSQ 155
Query: 278 PDLLLLDEPTNHLD-------LDTIEWL--EG---YLGKQDVPMVIISHDRAFL 319
P LLLLDEP+ L DTIE L +G +L +Q+ + DR ++
Sbjct: 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYV 209
|
Length = 237 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-09
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 18/144 (12%)
Query: 423 SVVTIKNLEFGYEDRLLF--NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
S++ KN+ F Y+ F + I +G+ T+I+G NG GKST+ KL++G+EK + GE
Sbjct: 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE 65
Query: 481 VLLGEHNVLPNYFE----------QNQAEALDLDKTVLETVAEAAEDWRI--DDIKGLLG 528
+ + + FE QN + + V VA E+ + D++ +
Sbjct: 66 IFYNNQAITDDNFEKLRKHIGIVFQN-PDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVS 124
Query: 529 RCNFKADMLDRKVS---LLSGGEK 549
+ DML+R LSGG+K
Sbjct: 125 EALKQVDMLERADYEPNALSGGQK 148
|
Length = 269 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-09
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 423 SVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
++ ++N+ F Y + + I GE AI+G NG GKST+ K++ GL KP+ GE
Sbjct: 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGE 65
Query: 481 VLL 483
+ +
Sbjct: 66 IKI 68
|
Length = 271 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-09
Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 46/189 (24%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IKAKSNMKIAFLSQEF 170
V + + V GE + + G NGAGKTT LR++AG +SG + I K+
Sbjct: 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTA---------- 75
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230
+R R FM+ G L ++ L S ++++
Sbjct: 76 ----TRGDRSRFMAYL-------GHLPGLKADL-STLENLHF------------------ 105
Query: 231 NLDTLDAKVSKLMPELGFT----ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP 286
L L + +K MP A D LV S+G + R++L ++ L L LLDEP
Sbjct: 106 -LCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEP 164
Query: 287 TNHLDLDTI 295
+LDL+ I
Sbjct: 165 YANLDLEGI 173
|
Length = 214 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 1e-09
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 19/138 (13%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
++N+ + D + N + ++ GE I GP+GCGKSTLLK++ L P G +L
Sbjct: 10 LQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE 69
Query: 487 NVL---PNYFEQN-----QAEALDLDKTVLETVAEAAEDWRI-------DDIKGLLGRCN 531
++ P + Q Q L D TV + + W+I L R
Sbjct: 70 DISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFP---WQIRNQQPDPAIFLDDLERFA 125
Query: 532 FKADMLDRKVSLLSGGEK 549
+L + ++ LSGGEK
Sbjct: 126 LPDTILTKNIAELSGGEK 143
|
Length = 225 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 1e-09
Identities = 54/215 (25%), Positives = 89/215 (41%), Gaps = 53/215 (24%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-------KAKSNMKIAF 165
LK V +++GE + L+G +G GK+T L +I+G +P SG VI + + + F
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD-MDLMGRLLDEFDLLQ 224
Q + + TVRE A + K ER + V++ + L+G L
Sbjct: 61 --QNYSLLPWLTVRENIALAVDRVLPDLSKSER-----RAIVEEHIALVG--------LT 105
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
A D+ S G + R+++ + L P +LLLD
Sbjct: 106 EAA--------------------------DKRPGQLSGGMKQRVAIARALSIRPKVLLLD 139
Query: 285 EPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315
EP LD T L+ L + V +++++HD
Sbjct: 140 EPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 2e-09
Identities = 36/158 (22%), Positives = 58/158 (36%), Gaps = 30/158 (18%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
++ ++NL + A + +E GE I+G +G GKSTL +MGL
Sbjct: 3 SPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEG 62
Query: 478 G----GEVLLGEHNVLPN--------------YFEQNQAEALDLDKTVLETVAEA----- 514
G GEV+L ++L Q+ +L+ T+ + + EA
Sbjct: 63 GRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG 122
Query: 515 --AEDWRIDDIKGLLGRCNFKADML-DRKVSLLSGGEK 549
+ LL + DR LSGG +
Sbjct: 123 KGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMR 160
|
Length = 539 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 30/208 (14%)
Query: 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKI--AFLSQEFEVSMSRT 177
++G+ +GLVG NG GK+T L+I+AG+ +P+ G +I F E + ++
Sbjct: 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82
Query: 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237
+ + K + ++ + KA++ V +LL++K + LD L
Sbjct: 83 LEGDVKVIVKPQY-----VDLIPKAVKGKVG------------ELLKKKDERGKLDEL-V 124
Query: 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD---T 294
+L L DR + S G R+++ L +D D DEP+++LD+
Sbjct: 125 DQLELRHVL-------DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLN 177
Query: 295 IEWLEGYLGKQDVPMVIISHDRAFLDQL 322
L L + D ++++ HD A LD L
Sbjct: 178 AARLIRELAEDDNYVLVVEHDLAVLDYL 205
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 2e-09
Identities = 54/240 (22%), Positives = 112/240 (46%), Gaps = 36/240 (15%)
Query: 59 IAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENIS----KSYKGVTVLK 114
I +A++ +E F F+ ++ ++ ++ V+ +I+ S +GV
Sbjct: 299 IFEARAKLEDFFDLEDSVFQREEPADAPE---LPNVKGAVEFRHITFEFANSSQGV---F 352
Query: 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174
DV++E K G+ V +VG GAGKTT + ++ +P G ++ + I +++E S+
Sbjct: 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGID--INTVTRE---SL 407
Query: 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234
+++ F A I E ++ E A D+ ++ + A D
Sbjct: 408 RKSIATVFQDAGLFNRSIR---ENIRLGREGATDE-----------EVYEAAKAAAAHDF 453
Query: 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ + + +G + G+RL S G + R+++ + +L++ +L+LDE T+ LD++T
Sbjct: 454 ILKRSNGYDTLVG---ERGNRL----SGGERQRLAIARAILKNAPILVLDEATSALDVET 506
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 2e-09
Identities = 59/234 (25%), Positives = 104/234 (44%), Gaps = 36/234 (15%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++L ++K Y G + + + V+ GE GL+GVNGAGKTT +++ G SG+
Sbjct: 1938 LRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDAT 1997
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
A ++ L+ +V + +F A+DD+ L GR
Sbjct: 1998 VAGKSI----LTNISDVHQNMGYCPQF----------------------DAIDDL-LTGR 2030
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
E L + + V + ++ + + LG + DRL ++S G + ++S L+
Sbjct: 2031 ---EHLYLYARLRGVPAEEIEKVANWSIQSLGLSL-YADRLAGTYSGGNKRKLSTAIALI 2086
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKI 326
P L+LLDEPT +D L + ++ +V+ SH + LCT++
Sbjct: 2087 GCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRL 2140
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 2e-09
Identities = 61/262 (23%), Positives = 118/262 (45%), Gaps = 35/262 (13%)
Query: 95 SSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+G+ + +++ +++ G T L+D ++ V G LVGVNG+GK+T + + G SG
Sbjct: 4 QAGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGK 63
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
I+ L Q + +++ ++ + E V + V+D+ +M
Sbjct: 64 ---------ISILGQ----PTRQALQKNLVAYVPQS-------EEVDWSFPVLVEDVVMM 103
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKL-MPELGFTADDGDRLVASFSSGWQMRMSLGK 272
GR L R+A+ + + A ++++ M E R + S G + R+ L +
Sbjct: 104 GR-YGHMGWL-RRAKKRDRQIVTAALARVDMVEFRH------RQIGELSGGQKKRVFLAR 155
Query: 273 ILLQDPDLLLLDEPTNHLDLDT---IEWLEGYLGKQDVPMVIISHDRAFLDQLC--TKIV 327
+ Q ++LLDEP +D+ T I L L + M++ +H+ + + C T +V
Sbjct: 156 AIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV 215
Query: 328 ETEMGVSRTYEGNYSQYVLEKA 349
+ + S E ++ LE A
Sbjct: 216 KGTVLASGPTETTFTAENLELA 237
|
Length = 272 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 3e-09
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 27/128 (21%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
+L++++GE A++G NG GKSTL+K++ GL +P GE+ + V + +A+ L
Sbjct: 24 SLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIK----SPRDAIRL 79
Query: 504 -------------DKTVLETVA---EAAEDWRID------DIKGLLGRCNFKADMLDRKV 541
TV E + E ++ ID IK L R D D KV
Sbjct: 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD-PDAKV 138
Query: 542 SLLSGGEK 549
+ LS GE+
Sbjct: 139 ADLSVGEQ 146
|
Length = 501 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 3e-09
Identities = 60/249 (24%), Positives = 100/249 (40%), Gaps = 33/249 (13%)
Query: 101 ENISKSY-----KGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
N+SK++ GV VL++V+ V GE V L G +G+GK+T LR + PD G
Sbjct: 8 SNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQ 67
Query: 154 VIKAKSNMKIAFLSQE-FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL 212
++ + ++ E EV R ++S F + L+ V + L
Sbjct: 68 ILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPL--------- 118
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
A+ V + AK + L+ L A+FS G Q R+++ +
Sbjct: 119 -------------LARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIAR 165
Query: 273 ILLQDPDLLLLDEPTNHLDL---DTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329
+ D +LLLDEPT LD + L + +V I HD + + ++++
Sbjct: 166 GFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDV 225
Query: 330 EMGVSRTYE 338
R
Sbjct: 226 SAFSPRKEA 234
|
Length = 235 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ +N+ F Y+ R + + TI G+K AI+GP+G GKST+L+L+ G +L+
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 484 GEHNV 488
++
Sbjct: 61 DGQDI 65
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 4e-09
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
S + +NL Y+ R + N +L + GE ++GPNG GK+T +I+GL +P G++
Sbjct: 2 MSTLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKI 61
Query: 482 LLGEHNV--LPNY 492
LL + ++ LP +
Sbjct: 62 LLDDEDITKLPMH 74
|
Length = 243 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 4e-09
Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 42/214 (19%)
Query: 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKI--AFLSQEFEVSMSRT 177
+ G+ VG++G NG GK+T L+I+AG+ +P+ G S ++ F E + +
Sbjct: 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKL 156
Query: 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDM----DLMGRLLDEFDLLQRKAQAVNLD 233
E + K + ++ + K ++ V ++ D G+ + + L L+
Sbjct: 157 YEGELRAVHKPQY-----VDLIPKVVKGKVGELLKKVDERGKFDEVVERL-------GLE 204
Query: 234 -TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD- 291
LD VS+L S G R+++ LL+D D+ DEP+++LD
Sbjct: 205 NVLDRDVSEL------------------SGGELQRVAIAAALLRDADVYFFDEPSSYLDI 246
Query: 292 ---LDTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322
L+ + + ++++ HD A LD L
Sbjct: 247 RQRLNAARVIRELA-EDGKYVIVVEHDLAVLDYL 279
|
Length = 591 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 25/139 (17%)
Query: 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--- 488
+GY +L + +LTI+ KT I+G +G GKSTL KL++G + R GE+LL ++
Sbjct: 483 YGYGSNILSD-ISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI 541
Query: 489 -------LPNYFEQNQAEALDLDKTVLET-VAEAAEDWRIDDIKGLLGRCNFKADM---- 536
NY Q E ++LE + A E+ D+I K D+
Sbjct: 542 DRHTLRQFINYLPQ---EPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMP 598
Query: 537 ------LDRKVSLLSGGEK 549
L + S +SGG+K
Sbjct: 599 LGYQTELSEEGSSISGGQK 617
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 5e-09
Identities = 42/132 (31%), Positives = 56/132 (42%), Gaps = 37/132 (28%)
Query: 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL--GEHNVLP--------- 490
R +LT+ERGE+ AI+GP+G GKSTLL LI G P G + L +H P
Sbjct: 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76
Query: 491 ----NYF-----EQNQAEALD----LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML 537
N F QN L+ L+ E + A I+ D+L
Sbjct: 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE-------------DLL 123
Query: 538 DRKVSLLSGGEK 549
R LSGG++
Sbjct: 124 ARLPGQLSGGQR 135
|
Length = 232 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 5e-09
Identities = 52/209 (24%), Positives = 89/209 (42%), Gaps = 56/209 (26%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
++ E++SK+Y G L+ VT+ ++ GE L G +GAGK+T L++I G E P +G +
Sbjct: 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF 61
Query: 155 ----IKAKSNMKIAFLS-------QEFEVSMSRTVREEFMSAFKEEMEIAG-KLERVQKA 202
I N ++ FL Q+ + M RTV + + IAG + +++
Sbjct: 62 SGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIP----LIIAGASGDDIRRR 117
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
+ +A+D + L+ D S
Sbjct: 118 VSAALDKVGLL-------------------------------------DKAKNFPIQLSG 140
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G Q R+ + + ++ P +LL DEPT +LD
Sbjct: 141 GEQQRVGIARAVVNKPAVLLADEPTGNLD 169
|
Length = 222 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 5e-09
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 425 VTIKNLEFGYEDR-----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+++++ F ++ NL + +GE AI+GP G GKS+LL ++G + G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 480 EVLLG 484
V +
Sbjct: 61 SVSVP 65
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 6e-09
Identities = 24/43 (55%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGE 485
L ++RGE AI+GP+G GKSTLL ++ GL+ P GEV LLG+
Sbjct: 30 ELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQ 72
|
Length = 228 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 6e-09
Identities = 39/126 (30%), Positives = 51/126 (40%), Gaps = 31/126 (24%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------NYF 493
+ + GE ++GPNG GKSTLL + GL P G + + Y
Sbjct: 16 SAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAAELARHRAYL 74
Query: 494 EQNQAEA--------LDL---DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVS 542
Q Q L L DKT E VA A ++++ LG D L R V+
Sbjct: 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASA-----LNEVAEALGL----DDKLGRSVN 125
Query: 543 LLSGGE 548
LSGGE
Sbjct: 126 QLSGGE 131
|
Length = 248 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 7e-09
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 22/128 (17%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNY------ 492
+ +L I +GE + GP+G GK+TLLKL+ G P G+V + +V L
Sbjct: 19 HDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLR 78
Query: 493 ------FEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSL- 543
F+ + L D+TV E VA E + +I+ +G + + + +
Sbjct: 79 RRIGVVFQDFR---LLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP 135
Query: 544 --LSGGEK 549
LSGGE+
Sbjct: 136 EQLSGGEQ 143
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 7e-09
Identities = 49/202 (24%), Positives = 82/202 (40%), Gaps = 50/202 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ L+++ SY + + D+T V GE V ++G +GAGK+T L +IAG E P SG ++
Sbjct: 2 LALDDVRFSYGHLPMRFDLT--VPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILIN 59
Query: 158 KSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
+ ++ L QE + TV + + KL Q+
Sbjct: 60 GVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL----KLNAEQR-------- 107
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ ++ A V L RL S G + R++
Sbjct: 108 -----------EKVEAAAAQVGLAGFL-----------------KRLPGELSGGQRQRVA 139
Query: 270 LGKILLQDPDLLLLDEPTNHLD 291
L + L+++ +LLLDEP + LD
Sbjct: 140 LARCLVREQPILLLDEPFSALD 161
|
Length = 231 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 8e-09
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 20/142 (14%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +NL Y R + N +L++++GE ++GPNG GK+T +I+GL KP G++LL
Sbjct: 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60
Query: 485 EHNV--LP---------NYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLL 527
++ LP Y Q + L TV E + E R + ++ LL
Sbjct: 61 GQDITKLPMHKRARLGIGYLPQEASIFRKL--TVEENILAVLEIRGLSKKEREEKLEELL 118
Query: 528 GRCNFKADMLDRKVSLLSGGEK 549
+ + K S LSGGE+
Sbjct: 119 EEFHITH-LRKSKASSLSGGER 139
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 8e-09
Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 35/154 (22%)
Query: 424 VVTIKNLEFGYEDRL-----LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
++ ++N+ + + +L I +GE IIG +G GKSTLL+LI LE+P
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 479 GEVLLGEHNV--LPNY----FEQN-----QAEALDLDKTVLETVAEAAEDWRID------ 521
G V + ++ L Q Q L +TV E VA E +
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQ 120
Query: 522 ------DIKGLLGRCNFKADMLDRKVSLLSGGEK 549
++ GL +D DR + LSGG+K
Sbjct: 121 RVAELLELVGL-------SDKADRYPAQLSGGQK 147
|
Length = 339 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 8e-09
Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 10/96 (10%)
Query: 464 STLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN---------QAEALDLDKTVLETVAEA 514
STLLKLI GL +P G +LL + + Q L + TV E +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 515 A-EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+ + L R + V LSGG+K
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVGTLSGGQK 96
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 8e-09
Identities = 25/44 (56%), Positives = 31/44 (70%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
LT +GE TAI+GP+G GKSTLL LI G E P+ G VL+ +V
Sbjct: 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDV 62
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 9e-09
Identities = 53/202 (26%), Positives = 94/202 (46%), Gaps = 35/202 (17%)
Query: 98 VKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
V+ +++S SY ++DV++E K G+ V +VG GAGK+T + ++ +P SG I
Sbjct: 335 VEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG-RIL 393
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEM----EIAGKLERVQKALESAVDDMDL 212
I +++ ++R F++ I + RV + A D
Sbjct: 394 I-DGTDIRTVTRA-------SLRRNIAVVFQDAGLFNRSIEDNI-RVGR--PDATD---- 438
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+E +AQA D ++ K G+ G+R S G + R+++ +
Sbjct: 439 -----EEMRAAAERAQA--HDFIERK------PDGYDTVVGER-GRQLSGGERQRLAIAR 484
Query: 273 ILLQDPDLLLLDEPTNHLDLDT 294
LL+DP +L+LDE T+ LD++T
Sbjct: 485 ALLKDPPILILDEATSALDVET 506
|
Length = 588 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 1e-08
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ +LT+ GE A++G NG GKSTL+K++ G+ P GE+L+
Sbjct: 25 DGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILI 67
|
Length = 500 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 29/194 (14%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
GVT +KDV++EV+ GE VG+ GV G G++ + I+G +P SG ++
Sbjct: 270 GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILL-----------N 318
Query: 169 EFEVSMSRTVREEFMS--AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK 226
+V + RE A+ E +R L V D+ L L+ +K
Sbjct: 319 GKDVLGRLSPRERRRLGLAYVPE-------DRHGHGL---VLDLSLAENLV--LGRHDKK 366
Query: 227 AQA----VNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLL 282
+ ++ + +L+ E A D S S G Q ++ L + L + PDLL+
Sbjct: 367 PFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLI 426
Query: 283 LDEPTNHLDLDTIE 296
+PT LD+ IE
Sbjct: 427 AAQPTRGLDVGAIE 440
|
Length = 501 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 1e-08
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V KN+ F Y + +L I GE A++GP+G GKSTL+ LI G +L
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 483 LGEHNV 488
+ H+V
Sbjct: 61 IDGHDV 66
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 1e-08
Identities = 51/226 (22%), Positives = 92/226 (40%), Gaps = 42/226 (18%)
Query: 100 LENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
LE Y +L +++ V+ GE + + G +G GK+T L+I+A P SG ++
Sbjct: 4 LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL-- 61
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL--ESAVDDMDLMGR 215
FE V A+++++ AL ++ D++ +
Sbjct: 62 ------------FE---GEDVSTLKPEAYRQQVSYC----AQTPALFGDTVEDNLIFPWQ 102
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
+ + R A L S L + + S G + R++L + L
Sbjct: 103 IRN--RRPDRAAALDLLARFALPDSIL-----------TKNITELSGGEKQRIALIRNLQ 149
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEG----YLGKQDVPMVIISHDRA 317
P +LLLDE T+ LD +E Y+ +Q+V ++ I+HD+
Sbjct: 150 FMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD 195
|
Length = 223 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 1e-08
Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 43/238 (18%)
Query: 97 GVKLENISK-----------SYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG 145
G KL++I K + K V + KD+ + + +G+ VG +G GK+T L++I
Sbjct: 374 GKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIER 433
Query: 146 QEEPDSGNVIKAKSN-----------MKIAFLSQE---FEVSMSRTVREEFMS-----AF 186
+P G++I S+ KI +SQ+ F S+ ++ S A
Sbjct: 434 LYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEAL 493
Query: 187 KEEMEIAG-----KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD-AKVS 240
G + D++ M D +L++ + + + VS
Sbjct: 494 SNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVS 553
Query: 241 KLMPELGFTA---DDGDRLVAS----FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
K + F + D + LV S S G + R+S+ + ++++P +L+LDE T+ LD
Sbjct: 554 KKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611
|
Length = 1466 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-08
Identities = 55/209 (26%), Positives = 87/209 (41%), Gaps = 58/209 (27%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---- 155
L N+S G T+L ++ G+ GL+G NG+GK+T L+++ + P G ++
Sbjct: 14 LRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73
Query: 156 -----KAKS-NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIA-----GKLERVQKALE 204
+K+ K+A+L Q+ + TVR E + I G L R A
Sbjct: 74 PLESWSSKAFARKVAYLPQQLPAAEGMTVR--------ELVAIGRYPWHGALGRFGAADR 125
Query: 205 SAVDD-MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
V++ + L+G L+ A RLV S S G
Sbjct: 126 EKVEEAISLVG--------LKPLAH--------------------------RLVDSLSGG 151
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDL 292
+ R + ++ QD LLLDEPT+ LD+
Sbjct: 152 ERQRAWIAMLVAQDSRCLLLDEPTSALDI 180
|
Length = 265 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 1e-08
Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 25/146 (17%)
Query: 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++L + Y + N N R + A+IGPNG GKSTL + G+ KP G VL
Sbjct: 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62
Query: 483 L-GEHNVLPNYFE---------QNQAEALDLDKTVLETVA---------EAAEDWRIDDI 523
+ GE N E QN + + TV + +A E R+
Sbjct: 63 IRGEPITKENIREVRKFVGLVFQNPDDQI-FSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEK 549
+LG ++ DR LSGGEK
Sbjct: 122 LHMLGL----EELRDRVPHHLSGGEK 143
|
Length = 277 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-08
Identities = 54/230 (23%), Positives = 94/230 (40%), Gaps = 59/230 (25%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+ ++ Y G L+D+ ++ GE + ++G +G GKTT L +IAG G++
Sbjct: 4 ISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLD-- 61
Query: 160 NMKIAFLSQEFEVSMS-------RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL 212
+ E V R V++ AF ++ K++R++ A +
Sbjct: 62 GKPVEGPGAERGVVFQNEGLLPWRNVQDNV--AFGLQLAGVEKMQRLEIAHQ-------- 111
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+L++ V L+ G R + S G + R+ + +
Sbjct: 112 ---------MLKK----VGLE-------------GA----EKRYIWQLSGGQRQRVGIAR 141
Query: 273 ILLQDPDLLLLDEPTNHLDLDTIEWLEGYL-------GKQDVPMVIISHD 315
L +P LLLLDEP LD T E ++ L GKQ +++I+HD
Sbjct: 142 ALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQ---VLLITHD 188
|
Length = 255 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 41/204 (20%), Positives = 83/204 (40%), Gaps = 52/204 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++ N+S ++DV++ V+ GE +G+ G+ GAG+T R + G SG +
Sbjct: 264 LEVRNLSGG----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLD 319
Query: 155 ---IKAKSNMK-----IAFLSQEFEVS---MSRTVREEFMSAFKEEMEIAGKLERVQKAL 203
++ +S IA++ ++ + + ++ E ++
Sbjct: 320 GKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIA-ENITL------------------ 360
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
A L+D RK +A+ + + L ++ + + S G
Sbjct: 361 --ASLRRFSRRGLIDR-----RKERAL--------AERYIRRLRIKTPSPEQPIGTLSGG 405
Query: 264 WQMRMSLGKILLQDPDLLLLDEPT 287
Q ++ L + L DP +L+LDEPT
Sbjct: 406 NQQKVVLARWLATDPKVLILDEPT 429
|
Length = 500 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
++ +KNL Y + L + NL I +GE AIIGP+G GKSTLL+ + GL P GE
Sbjct: 2 MMIEVKNLSKTYPGGHQALKD-VNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 481 VLLGEHNV 488
+L +
Sbjct: 61 ILFNGVQI 68
|
Length = 258 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-08
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
KNL + + N +LT+ + ++GPNG GKSTLLK+I G+ +P GE++ H
Sbjct: 3 TKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH 62
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-08
Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 9/129 (6%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S+V+++N+ + R + + +L ++ G+ ++GPNG GKSTL+++++GL P G V+
Sbjct: 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG-VI 61
Query: 483 LGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE---DWRIDDIKGLLGRCNFKADMLDR 539
+ Y Q L LD T+ TV + +DI L R ++D
Sbjct: 62 KRNGKLRIGYVPQK----LYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQ-AGHLIDA 116
Query: 540 KVSLLSGGE 548
+ LSGGE
Sbjct: 117 PMQKLSGGE 125
|
Length = 251 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 2e-08
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-- 478
+ I +L Y + + +L IE GE A+IG +GCGK+TLL+ I G K G
Sbjct: 2 ACGGIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 479 GEVLLGEHNV--LPNY 492
G + + + ++ P +
Sbjct: 62 GRIAIADRDLTHAPPH 77
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 2e-08
Identities = 44/145 (30%), Positives = 63/145 (43%), Gaps = 20/145 (13%)
Query: 411 KIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
+ R P ++V +L D L I GE I+GPNG GK+T KL+
Sbjct: 327 EERPPRDESERETLVEYPDLTKKLGDFSLEVEGG-EIYEGEVIGIVGPNGIGKTTFAKLL 385
Query: 471 MGLEKPRGGEVLLGEH-NVLPNYFEQNQAEALDLDKTVLETVAEAAED-----WRIDDIK 524
G+ KP GEV + P Y + + D TV + + +D ++ + IK
Sbjct: 386 AGVLKPDEGEVDPELKISYKPQYIKPDY------DGTVEDLLRSITDDLGSSYYKSEIIK 439
Query: 525 GL-LGRCNFKADMLDRKVSLLSGGE 548
L L R +LD+ V LSGGE
Sbjct: 440 PLQLER------LLDKNVKDLSGGE 458
|
Length = 590 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 55/210 (26%)
Query: 98 VKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ E ++ +Y L + V+ GE V LVG +GAGK+T +++ +P SG +
Sbjct: 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI 397
Query: 155 IKAKSNMK----------IAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQK 201
+ +++ +A + Q+ F S+ +R A EE+E A
Sbjct: 398 LLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAA------- 450
Query: 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261
R A A +S L PE G+ G+R V + S
Sbjct: 451 -----------------------RAAHA------HEFISAL-PE-GYDTYLGERGV-TLS 478
Query: 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G + R+++ + +L+D +LLLDE T+ LD
Sbjct: 479 GGQRQRIAIARAILKDAPILLLDEATSALD 508
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL 489
L + + R +LTI GE ++GP+GCGK+TLL LI G P G + L +
Sbjct: 11 LSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIE 70
Query: 490 PNYFEQN---QAEALDLDKTVLETVA 512
E+ Q EAL V++ VA
Sbjct: 71 GPGAERGVVFQNEALLPWLNVIDNVA 96
|
Length = 259 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 50/236 (21%), Positives = 94/236 (39%), Gaps = 45/236 (19%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE 169
+ + ++ +++G+ +GLVG +G+GK+T + +I F Q+
Sbjct: 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQG----------EIRFDGQD 349
Query: 170 FEVSMSRTVREEFMSAFKEEMEIA-----GKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224
+ + M + M++ G L + + + + L + Q
Sbjct: 350 I-----DGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQ 404
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
R +A + E+G +R FS G + R+++ + L+ P+L+LLD
Sbjct: 405 RVIEA-------------LEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLD 451
Query: 285 EPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD----RAFLDQLCT----KIVE 328
EPT+ LD ++ L K + + ISHD RA ++ KIVE
Sbjct: 452 EPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVE 507
|
Length = 534 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 57/248 (22%), Positives = 113/248 (45%), Gaps = 47/248 (18%)
Query: 79 NKKYSNKQSNTGASSISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKT 137
+ ++ NK+ T ++++ + + ++S SY G +L D++ +K K +VG++G+GK+
Sbjct: 455 DSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKS 514
Query: 138 TQLRIIAGQEEPDSGNVIKAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFK 187
T +++ G + SG ++ ++K I +L QE S ++ E + K
Sbjct: 515 TLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQE-PYIFSGSILENLLLGAK 573
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
E + + + A E A D+ + MP LG
Sbjct: 574 ENVSQ----DEIWAACEIAEIKDDI----------------------------ENMP-LG 600
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT-IEWLEGYLGKQD 306
+ + + +S S G + R++L + LL D +L+LDE T++LD T + + L QD
Sbjct: 601 YQTELSEE-GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD 659
Query: 307 VPMVIISH 314
++ ++H
Sbjct: 660 KTIIFVAH 667
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-08
Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 12/123 (9%)
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG--EHNVLPNYFE 494
R+LF + T+ GE + GPNG GK+TLL+++ GL +P GEV +
Sbjct: 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPH 72
Query: 495 QNQAEALDLD--KTVLETVAEAAEDWRID------DIKGLLGRCNFKADMLDRKVSLLSG 546
+N L K L + E W I+ L D + LS
Sbjct: 73 RNILYLGHLPGLKPEL-SALENLHFWAAIHGGAQRTIEDALAAVGL-TGFEDLPAAQLSA 130
Query: 547 GEK 549
G++
Sbjct: 131 GQQ 133
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
I N+ + +L++++GE ++GP+GCGK+TLL++I GLE+ G + G
Sbjct: 7 IDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGR 66
Query: 487 NV--LP----NYFEQNQAEALDLDKTVLETVA 512
++ LP +Y Q+ AL + TV + +A
Sbjct: 67 DITRLPPQKRDYGIVFQSYALFPNLTVADNIA 98
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 3e-08
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
R LF+ + T+ GE + GPNG GK+TLL+++ GL P G VLL
Sbjct: 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLL 59
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 3e-08
Identities = 25/62 (40%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL- 483
V +KN+ + + + NLTI++G ++GP+GCGK+T+L+L+ GLEKP G++ +
Sbjct: 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFID 66
Query: 484 GE 485
GE
Sbjct: 67 GE 68
|
Length = 351 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 3e-08
Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 40/187 (21%)
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178
+ GE V + G NGAGKT+ LRI+AG PD+G ++ + + R
Sbjct: 23 TLNAGELVQIEGPNGAGKTSLLRILAGLARPDAG---------EVLWQGEPI-----RRQ 68
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDL---MGRLLDEFDLLQRKAQAVNLDTL 235
R+E+ ++ G + K +A++++ + D+ L + AQ V L
Sbjct: 69 RDEYHQ----DLLYLGHQPGI-KTELTALENLRFYQRLHGPGDDEALWEALAQ-VGL--- 119
Query: 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI 295
GF D V S+G Q R++L ++ L L +LDEP +D +
Sbjct: 120 ----------AGFE----DVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGV 165
Query: 296 EWLEGYL 302
LE L
Sbjct: 166 ARLEALL 172
|
Length = 204 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +KNL + +A + +++GE I+G +G GKS L K IMGL
Sbjct: 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60
Query: 480 EVLLGE 485
++ GE
Sbjct: 61 RIVGGE 66
|
Length = 316 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 54/223 (24%), Positives = 87/223 (39%), Gaps = 41/223 (18%)
Query: 73 SADEFENKKYSNKQSNTGASSISSGVKLENIS-KSYKGVTVLKDVTWEVKKGEKVGLVGV 131
+A K + + G+ LEN+S ++ G T+L ++ +EV+ GE++ + G
Sbjct: 368 AAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGE 427
Query: 132 NGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEME 191
+GAGKT+ LR +AG SG + ++ + FL Q + T+RE
Sbjct: 428 SGAGKTSLLRALAGLWPWGSGRIS-MPADSALLFLPQRPYLP-QGTLREALCYP------ 479
Query: 192 IAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251
D +L+ L V L L L
Sbjct: 480 ----------NAAPDFSDAELVAVL-----------HKVGLG-------DLAERLDEEDR 511
Query: 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
L S G Q R++ ++LL P + LDE T+ LD +T
Sbjct: 512 WDRVL----SGGEQQRLAFARLLLHKPKWVFLDEATSALDEET 550
|
Length = 604 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 3e-08
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MG--LEKPR-G 478
+ +++L Y D+ NL I + + TA+IGP+GCGKSTLL+ + M + R
Sbjct: 7 AIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVE 66
Query: 479 GEVLLGEHNVL 489
GEVLL N+
Sbjct: 67 GEVLLDGKNIY 77
|
Length = 253 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 3e-08
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
L+F Y D+ L + + + G + G NG GK+TLLKLI GL P GE+L ++
Sbjct: 6 ELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI 65
|
Length = 200 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 4e-08
Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 51/208 (24%)
Query: 98 VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ +N+S Y V +LK ++ + G+ V LVG +G GK+T + ++ +P SG +
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 155 IKAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIA-GKLERVQKAL 203
+ +++ I +SQE V T+ E I GK + + +
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQE-PVLFDGTIAE----------NIRYGKPDATDEEV 109
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
E A +KA + + L P+ G+ G+R + S G
Sbjct: 110 EEAA-----------------KKANIHDF------IMSL-PD-GYDTLVGER-GSQLSGG 143
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ R+++ + LL++P +LLLDE T+ LD
Sbjct: 144 QKQRIAIARALLRNPKILLLDEATSALD 171
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 4e-08
Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 96 SGVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+G+KL+ + KSY G T V+K + +V GE + LVG +G GK+T LR++AG E SG
Sbjct: 2 AGLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSG 59
|
Length = 356 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 4e-08
Identities = 54/202 (26%), Positives = 86/202 (42%), Gaps = 54/202 (26%)
Query: 104 SKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKI 163
S + LKD+ EV KGE V +VG G+GK++ L + G+ E SG+V S I
Sbjct: 12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS---I 68
Query: 164 AFLSQEFEVSMSRTVREE--FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
A++SQE + + T+RE F F E ER +K +++ + DL
Sbjct: 69 AYVSQEPWI-QNGTIRENILFGKPFDE--------ERYEKVIKACALEPDL--------- 110
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV-----ASFSSGWQMRMSLGKILLQ 276
+++P DGD + S G + R+SL + +
Sbjct: 111 -------------------EILP-------DGDLTEIGEKGINLSGGQKQRISLARAVYS 144
Query: 277 DPDLLLLDEPTNHLDLDTIEWL 298
D D+ LLD+P + +D +
Sbjct: 145 DADIYLLDDPLSAVDAHVGRHI 166
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 4e-08
Identities = 52/232 (22%), Positives = 91/232 (39%), Gaps = 64/232 (27%)
Query: 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------- 154
K G + D + KGE ++G++G+GK+T +R++ EP +G +
Sbjct: 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ 60
Query: 155 ----IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDM 210
++ KI + Q+F + T+ + ++ E+ + ER +KALE
Sbjct: 61 SPVELREVRRKKIGMVFQQFALFPHMTILQN--TSLGPELLGWPEQERKEKALELL---- 114
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
+L+ + E R S G Q R+ L
Sbjct: 115 ----KLVG------------------------LEEY------EHRYPDELSGGMQQRVGL 140
Query: 271 GKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHD 315
+ L +PD+LL+DE + LD D ++ L+ L K +V I+HD
Sbjct: 141 ARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKT---IVFITHD 189
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 4e-08
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 425 VTIKNLEFGYEDRLLFNR-----ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+T + +E Y+ + F R N++I G AIIG G GKSTLL+ + GL +P G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 480 EVLLGEHNVLPN 491
V +GE +
Sbjct: 63 TVTIGERVITAG 74
|
Length = 290 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 4e-08
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472
++ IKNL + + NL+I +GE AI+GPNG GKSTL K+I G
Sbjct: 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG 55
|
Length = 252 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 5e-08
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQN 496
N++I GE ++GP+G GKSTLLKLI E P G + + +V +P Y +
Sbjct: 21 NISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIP-YLRRK 79
Query: 497 -----QAEALDLDKTVLETVAEAAE 516
Q L D+ V E VA A E
Sbjct: 80 IGVVFQDFRLLPDRNVYENVAFALE 104
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 5e-08
Identities = 55/225 (24%), Positives = 93/225 (41%), Gaps = 65/225 (28%)
Query: 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVR 179
K+G+ G++G NG GKTT ++I++G+ P+ G+ + E S ++
Sbjct: 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEE--------------EPSWDEVLK 141
Query: 180 E----EFMSAFKE----EMEIAGKLERVQ---KALESAVDDMDLMGRLL---DEFDLLQR 225
E + FK+ E+++ K + V K + V LL DE L
Sbjct: 142 RFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKV------RELLKKVDERGKLDE 195
Query: 226 KAQAVNLDT-LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+ + L+ LD +S+L S G R+++ LL+D D D
Sbjct: 196 VVERLGLENILDRDISEL------------------SGGELQRVAIAAALLRDADFYFFD 237
Query: 285 EPTNHLDL-------DTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322
EPT++LD+ I L + ++++ HD A LD L
Sbjct: 238 EPTSYLDIRQRLNVARLIREL-----AEGKYVLVVEHDLAVLDYL 277
|
Length = 590 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 5e-08
Identities = 54/225 (24%), Positives = 90/225 (40%), Gaps = 40/225 (17%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L+N+S G +L +V + + KGE V L+G +G GK+T L + G
Sbjct: 5 LKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIG-------------- 50
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
L+ +F + + E+ + G L Q AL L
Sbjct: 51 -----ALAGQFSCTGELWLNEQRLDMLPAAQRQIGIL--FQDAL------------LFPH 91
Query: 220 FDLLQRKAQAVNLDTL-DAKVSKLMPELGFTADDG--DRLVASFSSGWQMRMSLGKILLQ 276
+ Q A+ +A+ + L + DG + A+ S G + R++L + LL
Sbjct: 92 LSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLA 151
Query: 277 DPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHDRA 317
P LLLDEP + LD+ +W+ + +P V ++HD
Sbjct: 152 QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196
|
Length = 213 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-08
Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 51/231 (22%)
Query: 98 VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ +++S SY V VLK +T+ + GE V LVG +G+GK+T ++ +P G V
Sbjct: 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV 538
Query: 155 ---------IKAKS-NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
+ ++A + QE V S +VRE IA L
Sbjct: 539 LLDGVPLVQYDHHYLHRQVALVGQE-PVLFSGSVRE----------NIAYGLTDTPDEEI 587
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
A A+A N + P G+ + G++ S SG
Sbjct: 588 MAA-------------------AKAANAHDFIME----FPN-GYDTEVGEK--GSQLSGG 621
Query: 265 Q-MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH 314
Q R+++ + L++ P +L+LDE T+ LD + + L+ + +++I+H
Sbjct: 622 QKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAH 672
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 6e-08
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ I N+ + + NL + G A++GP+G GKSTLL++I GLE+P G + L
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRL 59
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 6e-08
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MG--LEKPR-G 478
+ I+NL Y ++ NL I + + TA+IGP+GCGKSTLL+ + M + R
Sbjct: 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIE 60
Query: 479 GEVLLGEHNV 488
G+VL ++
Sbjct: 61 GKVLFDGQDI 70
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 7e-08
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 100 LENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+EN+S Y G VL++V++ ++ GE + ++G +G+GK+T R+I G P SG V
Sbjct: 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 7e-08
Identities = 60/240 (25%), Positives = 101/240 (42%), Gaps = 75/240 (31%)
Query: 102 NISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV------ 154
++ SY G LK + ++ +KGE V L+G NGAGK+T G +P SG V
Sbjct: 6 DLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEP 65
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAF--------KEEMEIAGKLER 198
++ + + I F + + ++ + TV E+ AF KEE+E +R
Sbjct: 66 IKYDKKSLLEVRKTVGIVFQNPDDQL-FAPTVEEDV--AFGPLNLGLSKEEVE-----KR 117
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
V++AL +AV ++ + K
Sbjct: 118 VKEAL------------------------KAVGMEGFENKPPH----------------- 136
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHD 315
S G + R+++ IL P++++LDEPT+ LD I L L K+ + ++I +HD
Sbjct: 137 HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHD 196
|
Length = 275 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 7e-08
Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 50/228 (21%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK--------- 162
+LK +++ ++ GE +G++G +G+GK+T R++ G P SG+V ++++
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410
Query: 163 -IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
I +L Q+ E+ T+ E ++ F EE + +K +E+A RL +
Sbjct: 411 HIGYLPQDVEL-FDGTIAEN-IARFGEEAD-------PEKVIEAA--------RLAGVHE 453
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
L+ R Q DT + G A+ S G + R++L + L DP L+
Sbjct: 454 LILRLPQG--YDTR-------------IGEGG----ATLSGGQRQRIALARALYGDPFLV 494
Query: 282 LLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKI 326
+LDEP ++LD + L + + +V+I+H R KI
Sbjct: 495 VLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH-RPSALASVDKI 541
|
Length = 580 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 8e-08
Identities = 24/63 (38%), Positives = 40/63 (63%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S + +KNL + + + + +L ++ GE AIIGP+G GK+TLL+ I LE+P G +
Sbjct: 2 SAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR 61
Query: 483 LGE 485
+G+
Sbjct: 62 VGD 64
|
Length = 250 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 8e-08
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+L I +G+ I+G NGCGKSTL KL GL P+ GE+LL
Sbjct: 362 DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILL 401
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 8e-08
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 39/206 (18%)
Query: 98 VKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+ L N +K++ T L ++ E+ +G+ V ++G NGAGK+T L IAG +P SG
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 153 NV------IKAKSNMKIA-FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ + KS K A L++ F+ ++ T E ++ E + +A + ++ L S
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE--LTIE-ENLALA-ESRGKKRGLSS 117
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A L R F + + L ++ L S G +
Sbjct: 118 A-----LNERRRSSFRERLARLGLGLENRLSDRIGLL------------------SGGQR 154
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD 291
+SL L P +LLLDE T LD
Sbjct: 155 QALSLLMATLHPPKILLLDEHTAALD 180
|
Length = 263 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 8e-08
Identities = 57/229 (24%), Positives = 103/229 (44%), Gaps = 50/229 (21%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK-------- 162
L+ +++ ++ GE + ++G +G+GK+T R+I G P SG+V +++K
Sbjct: 332 PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFG 391
Query: 163 --IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEF 220
I +L Q+ E+ TV E ++ F E + +K +E+A +L
Sbjct: 392 KHIGYLPQDVEL-FPGTVAEN-IARFGENAD-------PEKIIEAA--------KLAGVH 434
Query: 221 DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
+L+ R G+ G A+ S G + R++L + L DP L
Sbjct: 435 ELILRLPD------------------GYDTVIGPG-GATLSGGQRQRIALARALYGDPKL 475
Query: 281 LLLDEPTNHLDLDTIEWLE---GYLGKQDVPMVIISHDRAFLDQLCTKI 326
++LDEP ++LD + + L L + + +V+I+H R L KI
Sbjct: 476 VVLDEPNSNLDEEGEQALANAIKALKARGITVVVITH-RPSLLGCVDKI 523
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 9e-08
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
L+++ GE A++G +GCGKSTL +L++GLE P G V
Sbjct: 33 LSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNV 69
|
Length = 268 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 9e-08
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 429 NLEFGYEDRLLFNRANLTIE-RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
L E RL + + E T I G +G GKSTLL+ I GLEKP GG ++L
Sbjct: 1 MLCVDIEKRLPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLN 57
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 9e-08
Identities = 24/40 (60%), Positives = 31/40 (77%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
NLTI++GE ++IG +GCGKSTLL LI GL +P G V+L
Sbjct: 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVIL 44
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 9e-08
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 422 RSVVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
++ +++ F Y D + T+ GE A++GP+G GKST+ L+ L +P G
Sbjct: 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG 535
Query: 479 GEVLL 483
G+VLL
Sbjct: 536 GQVLL 540
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 23/41 (56%), Positives = 27/41 (65%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
NL I GE AIIGP+G GKSTLL+ I L +P G +LL
Sbjct: 21 INLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+L I GE +IG +G GKSTL++ I LE+P G VL
Sbjct: 25 SLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVL 63
|
Length = 343 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-07
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 424 VVTIKNLEFGYE---DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+V +N+ F Y D L+ + T+ GE TA++GP+G GKST++ L+ +P+GG+
Sbjct: 11 IVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQ 70
Query: 481 VLLGEH 486
VLL
Sbjct: 71 VLLDGK 76
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 433 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
G D + +L+I +GE AI+G +G GKSTLL L+ GL+ P GEVL
Sbjct: 14 GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLF 64
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 53/227 (23%), Positives = 86/227 (37%), Gaps = 64/227 (28%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI------------- 155
G VLK + + ++GE + L+G NGAGK+T L + G P SG V+
Sbjct: 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGL 63
Query: 156 -KAKSNMKIAFLS---QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
+ + + + F Q F + + V ++ E E+ RV++AL AV
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVE---RRVREALT-AVGASG 119
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
L R ++K R+++
Sbjct: 120 LRERPTHCLSGGEKK----------------------------------------RVAIA 139
Query: 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHD 315
+ PD+LLLDEPT LD E + L + + + +VI +HD
Sbjct: 140 GAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHD 186
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-07
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR---GGE 480
++ +KN+ L N TI +GE ++GP+GCGKSTLL ++G + GE
Sbjct: 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE 61
Query: 481 VLLGEH--NVLP 490
+ L E ++LP
Sbjct: 62 LWLNEQRLDMLP 73
|
Length = 213 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 14/111 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG--GEVL 482
VT+K+ +LL + + GE TAI+GP+G GKSTLL + G G GEVL
Sbjct: 11 VTVKSSPSKSGKQLL-KNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVL 69
Query: 483 LGEHNVLPNYFEQ-----NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLG 528
+ + F + Q + L TV ET+ AA+ ++GL G
Sbjct: 70 INGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAK------LRGLSG 114
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 21/58 (36%), Positives = 37/58 (63%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++ +N+SK + VL ++ + +GE V ++G +G+GK+T LR I EE SG++I
Sbjct: 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
|
Length = 240 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 59/241 (24%), Positives = 96/241 (39%), Gaps = 63/241 (26%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV------IKAKSNMK--- 162
VL D+ E+ GE V L G +G+GKTT L +I G G++ + S +
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 163 ----IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
I ++ Q + T R+ VQ ALE L
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQN-----------------VQMALE-----------LQP 111
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VASFSSGWQMRMSLGKILL 275
+ + +A ++ +G GD L + S G + R+++ + L+
Sbjct: 112 NLSYQEARERA----------RAMLEAVGL----GDHLDYYPHNLSGGQKQRVAIARALV 157
Query: 276 QDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331
P L+L DEPT LD D +E ++ +Q ++I++HD LD + +IV E
Sbjct: 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILD-VADRIVHMED 216
Query: 332 G 332
G
Sbjct: 217 G 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 428 KNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+N+ F Y+D NLTI+RGE +IG NG GKSTL L+ GL +P+ GE+LL
Sbjct: 326 RNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382
|
Length = 547 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 18/90 (20%)
Query: 397 EEEQIEKPFQRKQMKIRFPERGRSG-----RSVVTIKNLEFGYEDRLLFNRANLTIERGE 451
E + K ++ + +S R V +K + + TIE+GE
Sbjct: 2 EVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGI-------------SFTIEKGE 48
Query: 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
IGPNG GK+T LK++ GL +P GEV
Sbjct: 49 IVGFIGPNGAGKTTTLKILSGLLQPTSGEV 78
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 9/68 (13%)
Query: 423 SVVTIKNLEFGYEDRLLF---------NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473
S++ ++++ Y LF +L+IE GE ++G +GCGKSTL +L++GL
Sbjct: 1 SLLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL 60
Query: 474 EKPRGGEV 481
EKP G V
Sbjct: 61 EKPAQGTV 68
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 22/58 (37%), Positives = 40/58 (68%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+++ N++KS+ G + DV+ + KGE L+G +G GK+T LR++AG E+P +G ++
Sbjct: 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIM 77
|
Length = 377 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 23/62 (37%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 95 SSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
S ++++ ++ Y+ G +L DV+ +++ GE V +VG +G+GK+T LR++ G E P+SG
Sbjct: 449 SGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESG 508
Query: 153 NV 154
+V
Sbjct: 509 SV 510
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-07
Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 50/202 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
V+L+ I SY + D+T +GE +VG +G+GK+T L +IAG E P SG V+
Sbjct: 1 VRLDKIRFSYGEQPMHFDLT--FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLIN 58
Query: 158 KSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
++ ++ L QE + TV + +++ ++A+E A+
Sbjct: 59 GVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLT---AEDRQAIEVALAR 115
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ L G RL S G + R++
Sbjct: 116 VGLAGLEK-------------------------------------RLPGELSGGERQRVA 138
Query: 270 LGKILLQDPDLLLLDEPTNHLD 291
L ++L++D +LLLDEP LD
Sbjct: 139 LARVLVRDKPVLLLDEPFAALD 160
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 43/149 (28%), Positives = 62/149 (41%), Gaps = 33/149 (22%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
++N+ F R L + +LT G+ T +IG NG GKSTLLK++ + P GE+LL
Sbjct: 13 ALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA 72
Query: 486 HNVLP----------NYFEQN--QAEALDLDKTVLETVAEAAEDW-------------RI 520
+ Y Q AE + TV E VA W ++
Sbjct: 73 QPLESWSSKAFARKVAYLPQQLPAAEGM----TVRELVAIGRYPWHGALGRFGAADREKV 128
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
++ L+G R V LSGGE+
Sbjct: 129 EEAISLVGLKPLA----HRLVDSLSGGER 153
|
Length = 265 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 104 SKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSG-------NV 154
SKS K +LK+V+ + K GE ++G +GAGK+T L +AG+ SG +
Sbjct: 18 SKSGK--QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL 75
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEFM 183
K I ++ Q+ + + TVRE M
Sbjct: 76 DKRSFRKIIGYVPQDDILHPTLTVRETLM 104
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-07
Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 18/141 (12%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++++ L+F E + LF+ ++T T I G NGCGKS+LL++I G+ +P G +
Sbjct: 1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYY 59
Query: 484 GEHNVLPN--------YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN-FK- 533
N N Y N L L+ TV E + +E + + + L + FK
Sbjct: 60 --KNCNINNIAKPYCTYIGHNL--GLKLEMTVFENLKFWSEIY--NSAETLYAAIHYFKL 113
Query: 534 ADMLDRKV-SLLSGGEKIILL 553
D+LD K SL SG +KI+ +
Sbjct: 114 HDLLDEKCYSLSSGMQKIVAI 134
|
Length = 195 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 70/216 (32%)
Query: 100 LENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
L++I +SY V VLK ++ ++ GE V +VG +G+GK+T + I+ ++P SG
Sbjct: 7 LKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYR 66
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK-----------EEMEI------AGKLER 198
A + +A L + ++++ RE F F+ + +E+ + +R
Sbjct: 67 VAGQD--VATLDAD---ALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQR 121
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL-- 256
+ +A E LLQR LG DR+
Sbjct: 122 LLRAQE-----------------LLQR--------------------LGL----EDRVEY 140
Query: 257 -VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ S G Q R+S+ + L+ ++L DEPT LD
Sbjct: 141 QPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176
|
Length = 648 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-07
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+ K Y GV L VK+GE +G+VG NG GKTT ++I+AGQ P+ N
Sbjct: 1 QLYPDCVKRY-GVFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND 56
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 25/151 (16%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRGGEV 481
+++IK+L ED+ + NL + GE AI+GPNG GKSTL + G E + GG V
Sbjct: 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV 60
Query: 482 LLGEHNVLPNYFEQNQAEALDL------------DKTVLETVAEAAEDWR---------- 519
++L E E + + ++ L+T A +R
Sbjct: 61 EFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDF 120
Query: 520 IDDIKGLLGRCNFKADMLDRKVSL-LSGGEK 549
D ++ + D+L R V++ SGGEK
Sbjct: 121 QDLMEEKIALLKMPEDLLTRSVNVGFSGGEK 151
|
Length = 248 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 3e-07
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316
S G Q R++L + L DPD+LLLDEPT+ LD T + L + +V+++HD
Sbjct: 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL 161
Query: 317 AFLDQLCTKIV 327
+L ++V
Sbjct: 162 DEAARLADRVV 172
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ +N+ Y + N NL I +GE +IGP+G GK+T +K+I L +P GE+ +
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 484 GEHNV 488
++
Sbjct: 61 DGEDI 65
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 56/226 (24%), Positives = 109/226 (48%), Gaps = 36/226 (15%)
Query: 95 SSGVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
S V+L NI+ Y + ++++ + ++ G++V LVG +G+GK+T +++AG +P SG
Sbjct: 475 SGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534
Query: 153 NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQK---ALESAV-D 208
I F E + R V +A + V + E V D
Sbjct: 535 E---------ILFDGIPRE-EIPREV-------------LANSVAMVDQDIFLFEGTVRD 571
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
++ L + + DL++ A D + ++ EL A+ G A+ S G + R+
Sbjct: 572 NLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAEL---AEGG----ANLSGGQRQRL 624
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH 314
+ + L+++P +L+LDE T+ LD +T + ++ L ++ +I++H
Sbjct: 625 EIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAH 670
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 42/119 (35%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 376 LGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGR-SVVTIKNLEFGY 434
LG S R A +K E L EE +E P + + F ER G V +KNL +
Sbjct: 881 LGGEGCSTREERALEKTEPLTEE--MEDPEHPEGINDSFFERELPGLVPGVCVKNLVKIF 938
Query: 435 E--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN 491
E R +R N+T + TA +G NG GK+T L ++ GL P G VL+G ++ N
Sbjct: 939 EPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETN 997
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 42/191 (21%), Positives = 70/191 (36%), Gaps = 44/191 (23%)
Query: 380 ANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-RL 438
A R + + LE Q + + + + R + + +T++NL D +
Sbjct: 354 ATLLRLAEFRQALEAAQMDTE-----KPARTGRRI-DFDDNADHGITLENLSLRTPDGQT 407
Query: 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--------EKPRGGEVLLGEHNVLP 490
L + N + GE+ I G +G GK++LL+ + GL P +L LP
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLF-----LP 462
Query: 491 N--YFEQ----------NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLD 538
Y Q N A D ++ + + LG + D D
Sbjct: 463 QRPYLPQGTLREALCYPNAAPDFS-DAELVAVLHKVG-----------LGDLAERLDEED 510
Query: 539 RKVSLLSGGEK 549
R +LSGGE+
Sbjct: 511 RWDRVLSGGEQ 521
|
Length = 604 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++L++ Y D N E+GE A++GPNG GKSTL G+ KP GEVL
Sbjct: 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60
Query: 483 L 483
+
Sbjct: 61 I 61
|
Length = 275 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKPR 477
+ ++NL F Y NL I + + TA IGP+GCGKSTLL+ L
Sbjct: 14 IQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAE- 72
Query: 478 GGEVLLGEHNVL 489
GE+LL N+L
Sbjct: 73 -GEILLDGENIL 83
|
Length = 260 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++K Y +DV++++ GE +G+VG +G+GKTT L ++ + PD+G V
Sbjct: 10 RGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH 64
|
Length = 258 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPM 309
RL S G + R+++G+ LL P LLL+DEP LD + + +LE + +P+
Sbjct: 126 GRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185
Query: 310 VIISHD 315
+ +SH
Sbjct: 186 LYVSHS 191
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 3e-07
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 7/62 (11%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +++L F Y+D +A +L+I G KTA++GPNG GKSTLL + G+ P+ G
Sbjct: 4 IIEVEDLHFRYKDG---TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRG 60
Query: 480 EV 481
V
Sbjct: 61 RV 62
|
Length = 274 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 65/229 (28%)
Query: 109 GVTV-LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAK 158
G+ V + D + +V++GE ++G++G+GK+T +R++ EP G + + A
Sbjct: 39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAA 98
Query: 159 S-----NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
KI+ + Q F + RTV E AF E++ K ER ++ALE+ ++L+
Sbjct: 99 ELRELRRKKISMVFQSFALLPHRTVLEN--VAFGLEVQGVPKAEREERALEA----LELV 152
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
G L+ + D+ S G Q R+ L +
Sbjct: 153 G--LEGYA--------------------------------DKYPNELSGGMQQRVGLARA 178
Query: 274 LLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHD 315
L DPD+LL+DE + LD D + L+ L K +V I+HD
Sbjct: 179 LANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKT---IVFITHD 224
|
Length = 386 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 4e-07
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ ++++ F Y D + ++ GE AI+G NG GKSTL KL+ GL P G
Sbjct: 3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62
Query: 480 EVLLG 484
+ +G
Sbjct: 63 TITVG 67
|
Length = 279 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 4e-07
Identities = 50/255 (19%), Positives = 108/255 (42%), Gaps = 27/255 (10%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLR----IIAGQEEPDSGN 153
+++E ++K++ L V + GE V L+G +G+GK+T LR +I G + S
Sbjct: 5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHI 64
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ ++ + L+++ S + T ++ + +L ++ L A+
Sbjct: 65 ELLGRTVQREGRLARDIRKSRANT------GYIFQQFNLVNRLSVLENVLIGALGSTPFW 118
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
F Q++ + + + +G + V++ S G Q R+++ +
Sbjct: 119 RTCFSWFTREQKQ-----------RALQALTRVGM-VHFAHQRVSTLSGGQQQRVAIARA 166
Query: 274 LLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329
L+Q ++L DEP LD ++ ++ L + +V+ H + + C +IV
Sbjct: 167 LMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVAL 226
Query: 330 EMGVSRTYEGNYSQY 344
G Y+G+ Q+
Sbjct: 227 RQG-HVFYDGSSQQF 240
|
Length = 262 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 5e-07
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 100 LENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ N+S SY VLK+++ E+K+GEK+ L+G +G+GK+T L+++ G +P G +
Sbjct: 3 INNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLD 62
Query: 158 KSNM---------KIAFLSQE 169
+ I+ L+Q
Sbjct: 63 GVPVSDLEKALSSLISVLNQR 83
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (122), Expect = 5e-07
Identities = 45/199 (22%), Positives = 91/199 (45%), Gaps = 29/199 (14%)
Query: 98 VKLENISKSYK-----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+K E ++ +Y+ L D+ EVKKG L+G G+GK+T L+ + G +P G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 153 NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL 212
V ++ +S T +++ + ++++ + + Q E+ + D+
Sbjct: 62 KV-------------TVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAF 108
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+ F + + KA+ + + L+ +G + ++ S G R+++
Sbjct: 109 GPQ---NFGIPKEKAEKIAAEKLEM--------VGLADEFWEKSPFELSGGQMRRVAIAG 157
Query: 273 ILLQDPDLLLLDEPTNHLD 291
IL +P++L+LDEPT LD
Sbjct: 158 ILAMEPEVLVLDEPTAGLD 176
|
Length = 288 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 5e-07
Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ + +SK Y +DV++++ GE +G+VG +G+GKTT L+ I+G+ PD+G V
Sbjct: 7 LSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVT 64
|
Length = 258 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 5e-07
Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 36/203 (17%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
++ + +S S G +LKD++ + + G +VG +GAGK+T +++I +P G++ I
Sbjct: 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILID 63
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
I + ++ M F K+ +E G + + +K
Sbjct: 64 GVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEY-GPMLKGEK--------------- 107
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+ V + +G + R V + S G R+S+ + L
Sbjct: 108 -------------------NVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLAN 148
Query: 277 DPDLLLLDEPTNHLDLDTIEWLE 299
+P++LLLDEPT+ LD + E +E
Sbjct: 149 NPEVLLLDEPTSALDPTSTEIIE 171
|
Length = 241 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 6e-07
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + +L + D + + +L++ G ++GPNG GK+TLL+ I G P G VL+
Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA 63
|
Length = 402 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 7e-07
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 20/122 (16%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN-----YFEQNQAE 499
L+ ++GE ++GPNG GK+TLL+ I+GL P G V + + Y Q
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 500 ALDLDKTVLETVAEA------------AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
A D +V TV D+ ++ L R ++ DR V LSGG
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAA--VRDALRRVGL-TELADRPVGELSGG 117
Query: 548 EK 549
++
Sbjct: 118 QR 119
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 7e-07
Identities = 51/225 (22%), Positives = 102/225 (45%), Gaps = 37/225 (16%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ +N+S Y+ LKDV++ + KG+ +VG NG+GK+T +++ G E+ SG
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG--- 64
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE-EMEIAGKLERVQKALESAVDDMDLMG 214
+I + +Q +R+ F+ + + G + + A
Sbjct: 65 ------EIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVA------------ 106
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274
F L + AV D + +VS+ + ++ + D + S G + R+++ +L
Sbjct: 107 -----FGL---ENHAVPYDEMHRRVSEALKQVDML-ERADYEPNALSGGQKQRVAIAGVL 157
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315
+P +++LDE T+ LD D + L + K ++ ++ I+HD
Sbjct: 158 ALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202
|
Length = 269 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 7e-07
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 407 RKQMKIRFPERGRSGRSVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKS 464
R PE R +T +N+ F Y + + + NL I+ GE I+GP+G GKS
Sbjct: 442 RSAGLAALPEL----RGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKS 497
Query: 465 TLLKLIMGLEKPRGGEVLLGEHNV 488
TL KL+ L P+ G+VL+ ++
Sbjct: 498 TLTKLLQRLYTPQHGQVLVDGVDL 521
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 7e-07
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 424 VVTIKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++ L + Y D N+ I++GE TAI+G NG GKSTL + + G+ KP G +L
Sbjct: 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 483 LG 484
Sbjct: 65 FD 66
|
Length = 283 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 7e-07
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
L DV++ VK+GE + ++G NG+GK+T +R+I G E +SG +I
Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII 65
|
Length = 279 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 7e-07
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
L N NL + E ++IGPNG GK+T+ + G KP GG +LL ++
Sbjct: 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHI 69
|
Length = 255 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 8e-07
Identities = 50/209 (23%), Positives = 91/209 (43%), Gaps = 53/209 (25%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
V+ N++ Y G L ++ ++ GE V LVG +G+GK+T + +I EPDSG ++
Sbjct: 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390
Query: 156 K----------AKSNMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKA 202
A ++A +SQ+ F +++ + E A + +++A
Sbjct: 391 LDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIA-------YGRTEQADR-AEIERA 442
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
L +A D + +L D +G ++G L S
Sbjct: 443 LAAA-YAQDFVDKLPLGLDT----------------------PIG---ENGVLL----SG 472
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G + R+++ + LL+D +L+LDE T+ LD
Sbjct: 473 GQRQRLAIARALLKDAPILILDEATSALD 501
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 9e-07
Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 53/237 (22%)
Query: 98 VKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
++ +N+S +Y+ T + DV E ++G+ +VG G+GK+T ++ I +P +G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 153 NV----IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK-EEMEIAGKLERVQKALESAV 207
V I K ++ R VR+ F+ E ++ E V
Sbjct: 63 TVTVDDITITHKTKDKYI---------RPVRKRIGMVFQFPESQL----------FEDTV 103
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS----SG 263
+ + G K +NLD + +L+ +LGF+ D V S S SG
Sbjct: 104 EREIIFGP----------KNFKMNLDEVKNYAHRLLMDLGFSRD-----VMSQSPFQMSG 148
Query: 264 WQMR-MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHD 315
QMR +++ IL +PD+++LDEPT LD + L+ ++ ++++SHD
Sbjct: 149 GQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD 205
|
Length = 286 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQ------- 497
T++ GE T ++GPNG GK+T L+++ GL +P G + +V+ E +
Sbjct: 26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSD 85
Query: 498 AEALDLDKTVLETVA----------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
+ L T E + + R++++ LG ++LDR+V S G
Sbjct: 86 STGLYDRLTARENLEYFAGLYGLKGDELTA-RLEELADRLG----MEELLDRRVGGFSTG 140
Query: 548 EK 549
+
Sbjct: 141 MR 142
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 1e-06
Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 30/146 (20%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LL 483
+ + + Y D+++ N + TI RGE ++GPNG GKST+ ++++G+ P G++ +L
Sbjct: 5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVL 64
Query: 484 GEH------------NVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD------IKG 525
GE V+P Q + LD + TV E + + + I
Sbjct: 65 GEPVPSRARLARVAIGVVP------QFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPS 118
Query: 526 LL--GRCNFKADMLDRKVSLLSGGEK 549
LL R KAD+ +V+LLSGG K
Sbjct: 119 LLEFARLESKADV---RVALLSGGMK 141
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 55/224 (24%), Positives = 88/224 (39%), Gaps = 62/224 (27%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161
+ +++ V +G+ ++G +G GKTT LR+I GQ PD G ++ N+
Sbjct: 22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYT 81
Query: 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+++ L Q + V + +E ++ L L S V +M
Sbjct: 82 VRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPL------LHSTV----MM----- 126
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
K +AV L +KLMP + S G R +L + + +P
Sbjct: 127 -------KLEAVGL----RGAAKLMP-------------SELSGGMARRAALARAIALEP 162
Query: 279 DLLLLDEPTNHLDLDT-------IEWLEGYLGKQDVPMVIISHD 315
DL++ DEP D T I L LG V V++SHD
Sbjct: 163 DLIMFDEPFVGQDPITMGVLVKLISELNSALG---VTCVVVSHD 203
|
Length = 269 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 40/132 (30%), Positives = 54/132 (40%), Gaps = 38/132 (28%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP--------------- 490
T G+ I+GPNG GKST LK++ G KP LG + P
Sbjct: 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPN-----LGRYEDPPSWDEVIKRFRGTELQ 150
Query: 491 NYFEQNQAEALD--------------LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM 536
NYF++ L + V E + + E + D++ LG N +
Sbjct: 151 NYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLEN----V 206
Query: 537 LDRKVSLLSGGE 548
LDR VS LSGGE
Sbjct: 207 LDRDVSELSGGE 218
|
Length = 591 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 23/134 (17%)
Query: 436 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG---GEVLLGEHNVLPNY 492
+ N +L +E G+ AI+G +G GK+TLL I G + G G++L P+
Sbjct: 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78
Query: 493 FEQNQAEALDLDK-----TVLETV------------AEAAEDWRIDDIKGLLGRCNFKAD 535
F++ A D TV ET+ ++A R++D+ LL
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV--LLRDLALT-R 135
Query: 536 MLDRKVSLLSGGEK 549
+ V +SGGE+
Sbjct: 136 IGGNLVKGISGGER 149
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
NLT+E GE ++GP+GCGK+TLL LI G + G + L V
Sbjct: 21 NLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPV 65
|
Length = 255 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ KN+ + + + +L I++GE IIGP+G GKSTLL+ I LE+ G++++
Sbjct: 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV 60
Query: 484 GEHNVL 489
V
Sbjct: 61 DGLKVN 66
|
Length = 240 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 36/206 (17%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKA 157
++++ S + +L+ + EV+ GE ++G NG+GK+T +AG+E E G V
Sbjct: 4 IKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER--VQKALESAVDDMDLMGR 215
++ E+S E AF+ +EI G + +Q AL +
Sbjct: 64 GKDL--------LELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQ--E 113
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKL-MPELGFTADDGDRLVAS----FSSGWQMRMSL 270
LD FD D ++ K++ L MPE D L S FS G + R +
Sbjct: 114 PLDRFDF---------QDLMEEKIALLKMPE--------DLLTRSVNVGFSGGEKKRNDI 156
Query: 271 GKILLQDPDLLLLDEPTNHLDLDTIE 296
++ + +P+L +LDE + LD+D ++
Sbjct: 157 LQMAVLEPELCILDESDSGLDIDALK 182
|
Length = 248 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
A+ T+ TAI G +G GK+TL++LI GL +P GE++L
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVL 56
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP 490
N A+L +E GE I+G +G GKSTL++L+ L +P GE+L+ ++
Sbjct: 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAK 94
|
Length = 386 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
+ T+ G+ AIIG NG GKSTL K++ G+ +P GE+L+ +H
Sbjct: 31 PVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDH 75
|
Length = 267 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 60/236 (25%), Positives = 109/236 (46%), Gaps = 32/236 (13%)
Query: 98 VKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+K++NI K + + L +V+ E+ +GE + ++G G+GKTT + + PD+G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 153 NVIKAKSNMKIAFLSQEFEVSMSR-TVREEFMSAFKEEMEIAGKLERV-QKA----LESA 206
+ + K ++E E + + +++ K+ EI ++ V Q A E
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 207 VDDMDLMGRL---LDEFDLLQRKAQAVNLDTLDAKVSKLMP-ELGFTADDGDRLVASFSS 262
++ + G + + + + +R A+ + L LD + P EL S
Sbjct: 123 IEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFEL--------------SG 168
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD-LDTIEWLE--GYLGKQDVPMVIISHD 315
G + R++L IL +PD L+ DEPT LD E LE L KQ +++++HD
Sbjct: 169 GQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224
|
Length = 305 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 425 VTIKNLEFGY------EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
+ ++N+ + Y E R LF+ NLTIE G TA IG G GKST+++L+ GL P
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFD-VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 479 GEVLLGE 485
G V + +
Sbjct: 62 GSVRVDD 68
|
Length = 280 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 61/238 (25%), Positives = 100/238 (42%), Gaps = 65/238 (27%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--------QEEPD 150
+++NI+K++ GV L +V+ +V+ GE V L G NGAGK+T +++++G E
Sbjct: 7 EMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIF 66
Query: 151 SGNVIKAKSNMK------IAFLSQEFEVSMSRTVREE-FMSAFKEEMEIAGKLERVQKAL 203
G ++A N++ IA + QE + +V E F+ E+ G
Sbjct: 67 EGEELQAS-NIRDTERAGIAIIHQELALVKELSVLENIFLG---NEITPGGI-------- 114
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
MD +D + +AQ KL+ +L + V + G
Sbjct: 115 ------MD--------YDAMYLRAQ------------KLLAQLKLDINPATP-VGNLGLG 147
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISH 314
Q + + K L + LL+LDEPT L LD I L+ + + ISH
Sbjct: 148 QQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLK----AHGIACIYISH 201
|
Length = 506 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S+++I + D L + A L IE E+ ++G NG GKSTL+K++ GEVL
Sbjct: 2 SLISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKIL-------NGEVL 54
Query: 483 L 483
L
Sbjct: 55 L 55
|
Length = 635 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++E+GE ++GPNG GK+T +++I+G+ P GEVL
Sbjct: 21 FSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ I +GE +G NG GKST LK++ GL P G+V +
Sbjct: 44 SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVN 84
|
Length = 325 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 22/58 (37%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ EN++ +Y G VLKDV++ + G+KV +VG +G+GK+T LR++ + SG++
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 52/209 (24%), Positives = 86/209 (41%), Gaps = 64/209 (30%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+KL +I+ Y + + D+T V++GE+V ++G +GAGK+T L +IAG P SG++
Sbjct: 2 LKLTDITWLYHHLPMRFDLT--VERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLN 59
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKE---------EMEIA-G-----KLERVQKA 202
+ S+ VSM F+E I G KL Q+
Sbjct: 60 GQDHTTTPPSRR-PVSM----------LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQR- 107
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
+ L A+ + ++ L RL S
Sbjct: 108 ------------------EKLHAIARQMGIEDL-----------------LARLPGQLSG 132
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G + R++L + L+++ +LLLDEP + LD
Sbjct: 133 GQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-06
Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 22/119 (18%)
Query: 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQ----NQA 498
GE + G +G GKSTLLKLI G+E+P G++ H++ +P Q Q
Sbjct: 28 GEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQD 87
Query: 499 EALDLDKTVLETVA-----EAAEDWRIDDIKGLLGRCNFKADMLDRKVSL---LSGGEK 549
L +D+TV + VA A DDI+ + K +LD+ + LSGGE+
Sbjct: 88 HHLLMDRTVYDNVAIPLIIAGASG---DDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQ 143
|
Length = 222 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 63/221 (28%), Positives = 89/221 (40%), Gaps = 64/221 (28%)
Query: 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKI----------AF 165
++ EV+ GE + LVG NGAGK+T L +AG P SG++ A ++ A+
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQR 225
LSQ+ F M + L Q + +
Sbjct: 74 LSQQ--------QTPPFA------MPVFQYLTLHQPDKTRTEAVASALNEV--------- 110
Query: 226 KAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG-WQMRMSLGKILLQ-DPD---- 279
A+A+ LD KL R V S G WQ R+ L ++LQ PD
Sbjct: 111 -AEALGLD------DKL-----------GRSVNQLSGGEWQ-RVRLAAVVLQVWPDINPA 151
Query: 280 --LLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHD 315
LLLLDEP N LD+ L+ L + Q + +V+ SHD
Sbjct: 152 GQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHD 192
|
Length = 248 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 58/252 (23%), Positives = 98/252 (38%), Gaps = 87/252 (34%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++EN++ Y LK++ ++ K + L+G +G GK+T LR + + G I+
Sbjct: 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEG 61
Query: 158 KSNMKIAFLSQEF------EVSMSRTVREEF-------MSAF--------------KEEM 190
K+ F Q+ V + R V F MS + K+E+
Sbjct: 62 ----KVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKEL 117
Query: 191 EIAGKLERVQKALESAVDDMDLMGRLLDEF-DLLQRKAQAVNLDTLDAKVSKLMPELGFT 249
+ E V+++L+ A L DE D L A
Sbjct: 118 D-----EIVEESLKKAA--------LWDEVKDRLHDSAL--------------------- 143
Query: 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYL 302
S G Q R+ + + L +P++LLLDEPT+ LD + I+ L
Sbjct: 144 ---------GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL---- 190
Query: 303 GKQDVPMVIISH 314
K+ +VI++H
Sbjct: 191 -KKKYTIVIVTH 201
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 435 EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ + + + ++ GE IIGP+G GKSTL +L++G+ P G V L
Sbjct: 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRL 395
|
Length = 580 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 35/153 (22%)
Query: 423 SVVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+++ +KNL F Y +++ N + +++GE +IIG NG GKST ++LI GL + G
Sbjct: 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESG 62
Query: 480 EV-----LLGEHNVLP-------------NYF-----EQNQAEALDLDKTVLETVAEAAE 516
++ LL E NV N F E + A L+ E + E
Sbjct: 63 QIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKE--- 119
Query: 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
R+++ L+G +FK +R+ + LSGG+K
Sbjct: 120 --RVNEALELVGMQDFK----EREPARLSGGQK 146
|
Length = 279 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 29/115 (25%)
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE--------HN-----VLPNY-------FE 494
++GP+GCGK+TLL+L+ G E+P G ++L H V +Y E
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 495 QNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+N A L + K + R+ + L+ + DRK LSGG++
Sbjct: 61 ENVAFGLKMRKVPRAEIKP-----RVLEALRLVQL----EEFADRKPHQLSGGQQ 106
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 425 VTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
+ ++NL Y + + LF+ ++ I + TA IGP+GCGKSTLL+
Sbjct: 26 LEVRNLNLFYGDKQALFD-ISMRIPKNRVTAFIGPSGCGKSTLLRCF 71
|
Length = 272 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 45/216 (20%), Positives = 89/216 (41%), Gaps = 42/216 (19%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170
VL+++ E+K G+ V +VG +GAGKTT LR+I G ++ + S +
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGK-----VEVP 451
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230
+ ++S + E+ F E + + L S D++ +L+
Sbjct: 452 KNTVSALIPGEYEPEFGEVT--------ILEHLRSKTGDLNAAVEILNR----------- 492
Query: 231 NLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHL 290
+ L + + + S+G + R L K+L + P++LL+DE HL
Sbjct: 493 ---------AGLSDAVLYRRKFSE-----LSTGQKERAKLAKLLAERPNVLLIDEFAAHL 538
Query: 291 DLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322
D T + + + + +++++H + L
Sbjct: 539 DELTAVRVARKISELAREAGITLIVVTHRPEVGNAL 574
|
Length = 593 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-06
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 108 KGVTV---LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+G++V ++DV++EV+ GE VG+ G+ G G+T + G P SG +
Sbjct: 8 RGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEIT 58
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MGLEKPR---G 478
++ + +L Y + N +L E TA+IGP+G GKSTLL+ I M P
Sbjct: 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTIT 64
Query: 479 GEVLLGEHNV 488
G ++ HN+
Sbjct: 65 GSIVYNGHNI 74
|
Length = 252 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 2e-06
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--------EK 475
+ ++NL D R+L + I+ G++ I GP+G GKS+L + + GL
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 476 PRGGEVL 482
P G ++L
Sbjct: 61 PEGEDLL 67
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++NL Y D + + RGE ++GPNG GK+T +K++ L KP G +
Sbjct: 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA 60
Query: 485 EHNVL 489
H+V+
Sbjct: 61 GHDVV 65
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 3e-06
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 30/137 (21%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGEH------ 486
Y D+ + N + T+ GE ++GPNG GKST+ ++I+G+ P G++ +LG
Sbjct: 51 YGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARAR 110
Query: 487 ------NVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD------IKGLL--GRCNF 532
V+P Q + LDL+ TV E + + + I LL R
Sbjct: 111 LARARIGVVP------QFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES 164
Query: 533 KADMLDRKVSLLSGGEK 549
KAD +VS LSGG K
Sbjct: 165 KADA---RVSDLSGGMK 178
|
Length = 340 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 19/111 (17%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--PNYFEQNQAEALDL 503
+I E I+GPNG GK+T +K++ G+ KP G++ + V P Y + D
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKA------DY 74
Query: 504 DKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGE 548
+ TV + ++ +D ++ + K L +LDR+V LSGGE
Sbjct: 75 EGTVRDLLSSITKDFYTHPYFKTEIAKPLQ-----IEQILDREVPELSGGE 120
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 49/212 (23%), Positives = 88/212 (41%), Gaps = 38/212 (17%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172
++DV++++ KGE +G+ G+ GA +T + + G E +G + +
Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKIN---------- 313
Query: 173 SMSRTVREEFMSAF---KEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK--- 226
+ E F EE G + S + ++ ++ LL
Sbjct: 314 --NHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIR---NYKNKVGLLDNSRMK 368
Query: 227 --AQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
Q V +D++ K ++G S S G Q ++ +G+ LL P++L+LD
Sbjct: 369 SDTQWV-IDSMRVKTPGHRTQIG-----------SLSGGNQQKVIIGRWLLTQPEILMLD 416
Query: 285 EPTNHLDLDT---IEWLEGYLGKQDVPMVIIS 313
EPT +D+ I L L K+D ++IIS
Sbjct: 417 EPTRGIDVGAKFEIYQLIAELAKKDKGIIIIS 448
|
Length = 491 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 6/63 (9%)
Query: 424 VVTIKNLE--FGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
V++I+NL +G+ ++LF+ NL I GE + GP+G GK+TLL LI GL +
Sbjct: 1 VISIRNLNHYYGHGSLRKQVLFD-INLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE 59
Query: 479 GEV 481
G +
Sbjct: 60 GSL 62
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 48/175 (27%), Positives = 69/175 (39%), Gaps = 54/175 (30%)
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVI--------KAKSNMKIAFLSQEFEVSMSRTVR 179
L+G +G GKTT LR++AG E+PDSG+++ I + Q + + TV
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 180 EEFMSAFKEEMEIAGKLE---RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236
E AF +M + E RV +AL V L+
Sbjct: 61 ENV--AFGLKMRKVPRAEIKPRVLEALRL------------------------VQLEEF- 93
Query: 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
DR S G Q R++L + L+ P +LLLDEP + LD
Sbjct: 94 ----------------ADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALD 132
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
Y DR + + + + GE I+GPNG GKSTLL LI G + P+G
Sbjct: 270 YNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG-DHPQG 313
|
Length = 490 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-06
Identities = 52/196 (26%), Positives = 83/196 (42%), Gaps = 48/196 (24%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE 169
+++L V VK+GE + L+G +G+GK+T L I+AG ++ SG V + + Q
Sbjct: 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEV---------SLVGQP 73
Query: 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES--------AVDDMDLMGRLLDEFD 221
+ EE + + V +S A+++++L L E
Sbjct: 74 -------------LHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESS 120
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV---ASFSSGWQMRMSLGKILLQDP 278
Q + A L+ +LG G RL A S G Q R++L + P
Sbjct: 121 -RQSRNGAK----------ALLEQLGL----GKRLDHLPAQLSGGEQQRVALARAFNGRP 165
Query: 279 DLLLLDEPTNHLDLDT 294
D+L DEPT +LD T
Sbjct: 166 DVLFADEPTGNLDRQT 181
|
Length = 228 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 3e-06
Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 43/199 (21%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170
+L+D++ ++ G L+G NGAGK+T L+ +AG + G +
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG-DLTGGG-------------APRGA 60
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA--------VDDMDLMGRLLDEFDL 222
V+ T+ E ++A A +L R++ L A ++ L+GR
Sbjct: 61 RVTGDVTLNGEPLAAID-----APRLARLRAVLPQAAQPAFAFSAREIVLLGRYPH---- 111
Query: 223 LQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ------ 276
R+A A+ + + + G TA G R V + S G R+ ++L Q
Sbjct: 112 -ARRAGALTHRDGEI-AWQALALAGATALVG-RDVTTLSGGELARVQFARVLAQLWPPHD 168
Query: 277 ---DPDLLLLDEPTNHLDL 292
P LLLDEPT LDL
Sbjct: 169 AAQPPRYLLLDEPTAALDL 187
|
Length = 272 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 57/228 (25%), Positives = 101/228 (44%), Gaps = 51/228 (22%)
Query: 76 EFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAG 135
+FEN K NK SN + K+ + ++ + T+L VT GE + ++G +G+G
Sbjct: 50 KFENMK--NKGSNI-KRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSG 106
Query: 136 KTTQLRIIAGQEEPDS--GNVIK-----AKSNMK-IAFLSQEFEVSMSRTVREEFMSAFK 187
K+T L +AG+ + ++ G ++ K +K F++Q+ + TVRE + F
Sbjct: 107 KSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLV--FC 164
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
+ + L + +K A++V + ELG
Sbjct: 165 SLLRLPKSLTKQEKI----------------------LVAESV------------ISELG 190
Query: 248 FTADD----GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
T + G+ + S G + R+S+ +L +P LL+LDEPT+ LD
Sbjct: 191 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238
|
Length = 659 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-06
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
+++K+L+ Y D + NL IE + TA+IGP+GCGKST L+
Sbjct: 4 ISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLR 47
|
Length = 250 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 3e-06
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
GE I+GP G GK+TL + + P GG V+
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIY 35
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 40/153 (26%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV- 481
+ + +N+E Y D+L+ + + ++RGE ++GPNG GK+T L++++GL P G +
Sbjct: 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65
Query: 482 LLGEH------------NVLPNYFEQNQAEALDLDKTVLE-----------TVAEAAEDW 518
L GE V+P Q + LD D TV E + A A
Sbjct: 66 LCGEPVPSRARHARQRVGVVP------QFDNLDPDFTVRENLLVFGRYFGLSAAAARA-- 117
Query: 519 RIDDIKGLL--GRCNFKADMLDRKVSLLSGGEK 549
+ LL + KAD KV LSGG K
Sbjct: 118 ---LVPPLLEFAKLENKADA---KVGELSGGMK 144
|
Length = 306 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-06
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 19/110 (17%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDK 505
I GE I+GPNG GK+T +KL+ G+ KP G + + P Y D D
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISP------DYDG 416
Query: 506 TVLETVAEAAED------WRIDDIKGL-LGRCNFKADMLDRKVSLLSGGE 548
TV + + A ++ + +K L L D+L+R V LSGGE
Sbjct: 417 TVEDLLRSAIRSAFGSSYFKTEIVKPLNLE------DLLERPVDELSGGE 460
|
Length = 591 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
E R L N +L I G+ +IG NG GKSTLL I G KP G++L+ +V
Sbjct: 15 TPLEKRAL-NGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDV 70
|
Length = 263 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 4e-06
Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 30/222 (13%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
K N++ Y L D+ ++++ + L+G +G GK+T LR +
Sbjct: 4 KTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFN-------------R 50
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
N KIA + E+ + V+ + + A ++ + + ++ ++S +++ +L
Sbjct: 51 MNDKIAKIDGLVEIE-GKDVKNQDVVALRKNVGMV--FQQPNVFVKSIYENISYAPKL-- 105
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VASFSSGWQMRMSLGKILL 275
N D +A V + ++G + D+L + S G Q R+ + + L
Sbjct: 106 -------HGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA 158
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD 315
P LLLLDEPT+ LD + +E L + ++ M++++H+
Sbjct: 159 IKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHN 200
|
Length = 246 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 5e-06
Identities = 41/208 (19%), Positives = 91/208 (43%), Gaps = 35/208 (16%)
Query: 94 ISSGVKLENISKSYKGVTVL---------KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144
I + +++ N+SK+++ T L K V++ +++G+ + ++G NG+GK+T +++A
Sbjct: 1 IETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLA 60
Query: 145 GQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
G EP SG ++ ++ + F F R + ++ ++ + I L+
Sbjct: 61 GMIEPTSGEIL--INDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILD----FPL 114
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
D++ R F+ L+ +G D + + G
Sbjct: 115 RLNTDLEPEQRRKQIFETLRM--------------------VGLLPDHANYYPHMLAPGQ 154
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDL 292
+ R++L + L+ P +++ DE LD+
Sbjct: 155 KQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 28/219 (12%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
+L+ I K++ GV L V G + LVG NGAGK+T ++++ G D+G+
Sbjct: 6 QLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGS----- 60
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
I +L +E + ++ +E + +E+ + +L + + +GR
Sbjct: 61 ----ILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQL---------TIAENIFLGR--- 104
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
EF + ++ + A+ KL+ L D+LV S G Q + + K+L +
Sbjct: 105 EF---VNRFGRIDWKKMYAEADKLLARLNLRF-SSDKLVGELSIGEQQMVEIAKVLSFES 160
Query: 279 DLLLLDEPTNHL-DLDTIEWLE--GYLGKQDVPMVIISH 314
++++DEPT+ L D +T L Q +V ISH
Sbjct: 161 KVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISH 199
|
Length = 501 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 5e-06
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476
++V K++ F Y D + N + +I RG TA+IG NG GKST+ KLI GL P
Sbjct: 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP 59
|
Length = 282 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 6e-06
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + +L Y + + + ++G +GPNG GKST +K+I G P G V +
Sbjct: 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVC 62
Query: 485 EHNVLPNYFE 494
+VL N E
Sbjct: 63 GEDVLQNPKE 72
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 6e-06
Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 80/269 (29%)
Query: 94 ISSGVKLENISKSY--------------------KGVTVLKDVTWEVKKGEKVGLVGVNG 133
++ V ++N++K Y K L D++ + +G+ +GLVG+NG
Sbjct: 1 MNVSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGING 60
Query: 134 AGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIA 193
+GK+T II G P G V + EVS+ + I+
Sbjct: 61 SGKSTLSNIIGGSLSPTVGKVDRNG------------EVSV---------------IAIS 93
Query: 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253
L +E+ M MG +RK ++ + P++ ++ G
Sbjct: 94 AGLSGQLTGIENIEFKMLCMG--------FKRK-----------EIKAMTPKIIEFSELG 134
Query: 254 DRL---VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLG 303
+ + V +SSG + ++ + +PD+L++DE + D LD I +
Sbjct: 135 EFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFK---- 190
Query: 304 KQDVPMVIISHDRAFLDQLCTKIVETEMG 332
+Q+ + +SH+ + Q CTKI E G
Sbjct: 191 EQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219
|
Length = 264 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 7e-06
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
V ++ + + + N ++ GEK A+IGP+G GKST+L+++M LE G++ +
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQV 59
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 7e-06
Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 63/180 (35%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172
L +++ VK G L+G +GAGKTT L ++AG++ +G + + I + +
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT--AGVI---TGEILIN--GRPLDK 75
Query: 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALE-SAVDDMDLMGRLLDEFDLLQRKAQAVN 231
+ R+ + + E+ ++ V++AL SA LL + QRK
Sbjct: 76 NFQRS------TGYVEQQDVHSPNLTVREALRFSA---------LLRGLSVEQRK----- 115
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
R+++G L P +L LDEPT+ LD
Sbjct: 116 -----------------------------------RLTIGVELAAKPSILFLDEPTSGLD 140
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 7e-06
Identities = 74/321 (23%), Positives = 135/321 (42%), Gaps = 75/321 (23%)
Query: 98 VKLENISKSYK----GVTVLKDVTW----------------EVKKGEKVGLVGVNGAGKT 137
VK E+++K YK LKD+ + EV +GE VG++G+NG+GK+
Sbjct: 5 VKFEHVTKKYKMYNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKS 64
Query: 138 TQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLE 197
T +IAG P+ G V S IA S + G+L
Sbjct: 65 TLSNLIAGVTMPNKGTVDIKGSAALIAISSG-----------------------LNGQL- 100
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG---D 254
+ +++++L G ++ L ++ K+ +++PE+ AD G
Sbjct: 101 -------TGIENIELKGLMMG----LTKE-----------KIKEIIPEIIEFADIGKFIY 138
Query: 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD-TIEWLE--GYLGKQDVPMVI 311
+ V ++SSG + R+ + +PD+L++DE + D T + L+ +Q +
Sbjct: 139 QPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFF 198
Query: 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIE--SQYAAWEKQQREIEQT 369
ISH + + CTK + G + Y G+ + V +++ +Q + E++ EQ
Sbjct: 199 ISHSLSQVKSFCTKALWLHYGQVKEY-GDIKEVVDHYDEFLKKYNQMSVEERKDFREEQI 257
Query: 370 KDLINRLGAGANSGRASSAEK 390
+ L +GR +K
Sbjct: 258 SQFQHGLLQEDQTGRERKRKK 278
|
Length = 549 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 8e-06
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
E GE T ++G NG GK+TLL++I L P G+V
Sbjct: 23 FEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60
|
Length = 245 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 8e-06
Identities = 24/59 (40%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+K+EN+S SY LK+V++E+ +GE V ++G NG+GK+T +I+ G +P SG +
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
|
Length = 271 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 8e-06
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 425 VTIKNLEFGYEDRL---LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ KN+ F Y+ R ++ N T+ G+ A +G +GCGKST+LKLI L P G++
Sbjct: 383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442
Query: 482 LLGE-HNV 488
++ + HN+
Sbjct: 443 IINDSHNL 450
|
Length = 1466 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 8e-06
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 40/180 (22%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171
+L+DV+ V +G+ ++G G+GK+T L+ + Q E G V +S IA++ Q+
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERS---IAYVPQQAW 731
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
+ M+ TVR + F EE D L A AV
Sbjct: 732 I-MNATVRGNIL-FFDEE----------------------------DAARL----ADAVR 757
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ L+A +++L G + G++ V + S G + R+SL + + + D+ LLD+P + LD
Sbjct: 758 VSQLEADLAQLGG--GLETEIGEKGV-NLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
|
Length = 1560 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 9e-06
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 32/129 (24%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG---------EVLLGEH---NVLPNYF 493
+ G+ T I+GPNG GK+T +K++ G P G EVL + L NYF
Sbjct: 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVL--KRFRGTELQNYF 152
Query: 494 EQNQAEALD--------------LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDR 539
++ + V E + + E ++D++ LG N +LDR
Sbjct: 153 KKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLEN----ILDR 208
Query: 540 KVSLLSGGE 548
+S LSGGE
Sbjct: 209 DISELSGGE 217
|
Length = 590 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 9e-06
Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 12/111 (10%)
Query: 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREE 181
GE + +VG G+GKTT R +A + P G VI + + ++ + ++
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYI--DGEDILEEVLDQLLLIIVGGKK 58
Query: 182 FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232
+ + + +A L +K + +LDE L Q L
Sbjct: 59 ASGSGELRLRLA--LALARKLKPDVL--------ILDEITSLLDAEQEALL 99
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP 490
+ T+ GE A++G NG GKSTL+K+I G+ P G + +G +
Sbjct: 31 DFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCAR 77
|
Length = 510 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
N +L + GE I+G +G GKSTLL+ I L +P G+VL+
Sbjct: 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLID 84
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 427 IKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ + Y + LF+ L +GE ++GP+G GKS+LL+++ LE PR G
Sbjct: 5 LNGINCFYGAHQALFD-ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
|
Length = 242 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +++ F Y + ++ + +L I+ GE I+G +G GKSTL KLI P G VL
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 483 LGEHNV 488
+ H++
Sbjct: 61 VDGHDL 66
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
I GE AI+G +G GKSTLL L+ GL+ P G+V+
Sbjct: 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVI 67
|
Length = 233 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 413 RFPERGRSGRSVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
R ER R G V +N+ F Y DR + +L IE GE A++G +G GKSTL+ LI
Sbjct: 322 RAIERAR-GD--VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLI 378
Query: 471 MGLEKPRGGEVLLGEH 486
+P G++LL H
Sbjct: 379 PRFYEPDSGQILLDGH 394
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 420 SGRSVVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
SGR + I N+ F Y +D L+ NL++ A++G G GKSTL L+MG
Sbjct: 338 SGR--IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE 395
Query: 479 GEVLL 483
GE+ L
Sbjct: 396 GEIRL 400
|
Length = 592 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
+ L F Y D + +L E+ + TA+IGP+GCGKST L+
Sbjct: 10 RGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLR 50
|
Length = 253 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
+ +++ KNL Y ++ ++I + TA+IGP+GCGKSTLL+
Sbjct: 2 TMEIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLR 50
|
Length = 253 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 24/207 (11%)
Query: 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNMKIAFLSQEFEVS 173
DV++ +++GE +G+ G+ GAG+T ++ + G GNV + I +Q
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAG 337
Query: 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233
++ V E+ ++ I L V K + +V L F R A L
Sbjct: 338 IA-MVPED-----RKRHGIVPILG-VGKNITLSV---------LKSFCFKMRIDAAAELQ 381
Query: 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD 293
+ + + +L + S G Q + L K+LL +P +L+LDEPT +D+
Sbjct: 382 IIGSAIQRL----KVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVG 437
Query: 294 T---IEWLEGYLGKQDVPMVIISHDRA 317
I L L ++ V ++++S + A
Sbjct: 438 AKYEIYKLINQLAQEGVAIIVVSSELA 464
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 27/127 (21%)
Query: 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEAL 501
AN T+ TA+ GP+G GK++L+ +I GL +P G + L VL + + L
Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGR-VL---VDAEKGIFL 71
Query: 502 DLDK----------------TV---LETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVS 542
+K TV L + + D + LLG +LDR
Sbjct: 72 PPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLG----IEHLLDRYPG 127
Query: 543 LLSGGEK 549
LSGGEK
Sbjct: 128 TLSGGEK 134
|
Length = 352 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL 489
N A+L I +GE I+G +G GKST ++++ L +P G++ + N++
Sbjct: 10 NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIM 58
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 58/273 (21%), Positives = 108/273 (39%), Gaps = 67/273 (24%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
+K+E ++ +Y G LK + +KKGE ++G NGAGK+T + + G +P SG +
Sbjct: 6 LKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILF 65
Query: 155 ------------IKAKSNMKIAFLS---QEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199
+K + ++ + F Q F S+ + V ++ E E+ +RV
Sbjct: 66 DGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVR---KRV 122
Query: 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
AL+ + L D+
Sbjct: 123 DNALKR-------------------------------TGIEHLK----------DKPTHC 141
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHD 315
S G + R+++ +L+ +P +L+LDEPT LD + ++ L + + ++I +HD
Sbjct: 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD 201
Query: 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEK 348
+ C + + G +GN + EK
Sbjct: 202 IDIVPLYCDNVFVMKEGRV-ILQGNPKEVFAEK 233
|
Length = 283 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-05
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 98 VKLENIS-KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++LEN+S + G +LKD+++E+K G+++ + G +G GK++ R +AG SG +
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 157 AKSNMKIAFLSQ 168
+ FL Q
Sbjct: 61 P-EGEDLLFLPQ 71
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 38/227 (16%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
V+ +++S +Y L D+++ + +G L+G NG+GK+T ++I G PD
Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNP-- 63
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
N KI T+ + + +E++ I + Q + DD+
Sbjct: 64 ----NSKITVDGI--------TLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDV----- 106
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
F L R AV + V ++ ++G D D A+ S G + R+++ IL
Sbjct: 107 ---AFGLENR---AVPRPEMIKIVRDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILA 159
Query: 276 QDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHD 315
+P +++LDE T+ LD L I L+ K ++ ++ I+HD
Sbjct: 160 VEPKIIILDESTSMLDPAGKEQILKLIRKLK---KKNNLTVISITHD 203
|
Length = 282 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL 489
T+ERG+ A++G +GCGKSTL +L+ +E P GGE+ ++L
Sbjct: 37 TLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLL 80
|
Length = 327 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++LEN+S SY G L+++ +KKGE +G++G NG+GK+T + G P G V+
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
|
Length = 274 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
++ +K+L Y ++ N ++ IE+ TA+IGP+GCGKST L+ I
Sbjct: 20 HILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSI 67
|
Length = 268 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 427 IKNLEFGYEDRL-LFNRANL--------TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
++NL + R F R + T+ G+ AIIG NG GKSTL K++ G+ +P
Sbjct: 7 VRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT 66
Query: 478 GGEVLLGEH 486
GE+L+ +H
Sbjct: 67 SGELLIDDH 75
|
Length = 267 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 420 SGRSVV-TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
+ + VV +NL Y + NL I E TAIIGP+GCGKST +K
Sbjct: 19 APKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIK 68
|
Length = 271 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 424 VVTIKNLEFGYED------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
++ KN+ + YE +L + NL +++GE I+G NG GKST+ K + L P
Sbjct: 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS 63
Query: 478 GGEV 481
G+V
Sbjct: 64 EGKV 67
|
Length = 280 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 48/232 (20%), Positives = 85/232 (36%), Gaps = 47/232 (20%)
Query: 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174
D+ +K+GE + LVG +G+GK+ I G P +++ +I +
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGL-----TQTSGEILLDGRPLLPLS 58
Query: 175 SR-----TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229
R T+ + +AF + ++L L+ +A
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSK---------QARALILEALEA 109
Query: 230 VNLDTLDAKVSKLMP-ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTN 288
V L +V K P +L S G R+ + LL +P L+ DEPT
Sbjct: 110 VGLPD-PEEVLKKYPFQL--------------SGGMLQRVMIALALLLEPPFLIADEPTT 154
Query: 289 HLDLDT----IEWLEGYLGKQDVPMVIISHDRAFL----DQLCT----KIVE 328
LD+ ++ L +++I+HD + D++ +IVE
Sbjct: 155 DLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVE 206
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
N +L I G+ A++GP+G GK+TLL++I GLE G + +V
Sbjct: 19 NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDV 66
|
Length = 353 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 12/103 (11%)
Query: 383 GRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY--EDRLLF 440
A A K+L L P + M + PE ++++N+ +
Sbjct: 285 SGARQAYKRLNELLANY----PSRDPAMPLPEPE------GHLSVENVTIVPPGGKKPTL 334
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ +++ GE AIIGP+G GKSTL +LI+G+ P G V L
Sbjct: 335 RGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRL 377
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 3e-05
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 424 VVTIKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++N+ + Y D NL I++GE IIG NG GKSTL + GL +P+ G+VL
Sbjct: 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 483 L 483
+
Sbjct: 61 V 61
|
Length = 274 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 3e-05
Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 61/247 (24%)
Query: 92 SSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
S + +K+ N+S Y +L+ V+ E+ + + ++G +G GK+T L+ + E +S
Sbjct: 2 SKLIPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELES 61
Query: 152 GNVIKAKSNMKIAFLSQ---EFEVSMSRTVREEFMSAFKEEM-------------EIAG- 194
+ + ++ F +Q E V+++R R+ M K + +I G
Sbjct: 62 ----EVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGW 117
Query: 195 --KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
KLE + +ESA+ D DL +D ++ K LD
Sbjct: 118 RPKLE-IDDIVESALKDADL-------WDEIKHKIHKSALD------------------- 150
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVP 308
S G Q R+ + + L P +LL+DEP LD + ++ + ++
Sbjct: 151 -------LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELT 203
Query: 309 MVIISHD 315
MVI+SH+
Sbjct: 204 MVIVSHN 210
|
Length = 261 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPM 309
DR S S G + R+++G+ LL P+LLL+DEP LDL + + +LE + ++P+
Sbjct: 123 DRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPI 182
Query: 310 VIISH 314
+ +SH
Sbjct: 183 LYVSH 187
|
Length = 352 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 82/415 (19%), Positives = 158/415 (38%), Gaps = 99/415 (23%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQ----LRII-AGQEEPDSGNVIKAKSNMKIA 164
+ ++++++ +++GE + +VG +G+GK+ +R++ ++ + + ++
Sbjct: 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88
Query: 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224
LS++ M + F+E M L V E + + L E +++
Sbjct: 89 ELSEQSAAQMRHVRGADMAMIFQEPMT---SLNPVFTVGEQIAESIRLHQGASREEAMVE 145
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
K LD + ++ + R S G + R+ + L P +L+ D
Sbjct: 146 AKRM---LDQVRIPEAQTILS---------RYPHQLSGGMRQRVMIAMALSCRPAVLIAD 193
Query: 285 EPTNHLD-------LDTIEWLEGYLGKQDVPM--VIISHDRAFLDQLCTKIVETEMGVSR 335
EPT LD L I+ L+ +++ M + I+HD MGV
Sbjct: 194 EPTTALDVTIQAQILQLIKVLQ-----KEMSMGVIFITHD---------------MGV-- 231
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQ---------TKDL---INRLGA--GAN 381
V E A + Y + +EQ T+ L + +LGA G +
Sbjct: 232 ---------VAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYTRALLAAVPQLGAMKGLD 282
Query: 382 SGRASSAEKKLERLQEEEQIEKP--------FQRKQMKIRFPERG----RSGRSVVTIKN 429
R ++E IE+ Q + + RFP R R R V ++
Sbjct: 283 YPRRFPLISLEHPAKQEPPIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEK 342
Query: 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ F + GE +++G +G GKST + ++ L + +GGE++
Sbjct: 343 VSF-------------DLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFN 384
|
Length = 623 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 3e-05
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+L F Y+D + NL T ++G NGCGKSTL + GL +P+ G VL
Sbjct: 6 DLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVL 59
|
Length = 271 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 48/224 (21%), Positives = 83/224 (37%), Gaps = 62/224 (27%)
Query: 128 LVGVNGAGKTTQLRIIA----GQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFM 183
+VG NGAGKTT + + G+ P+S K L +E EV V+ F
Sbjct: 27 IVGQNGAGKTTIIEALKYALTGELPPNS------KGGAHDPKLIREGEVRAQ--VKLAFE 78
Query: 184 SAFKEEMEIAGKLERVQKALESAV----DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239
+A ++ I L LE+ + + + L
Sbjct: 79 NANGKKYTITRSLA----ILENVIFCHQGESN---------WPLLD-----MRGRCSG-- 118
Query: 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW-- 297
G++++AS +R++L + + +L LDEPT +LD + IE
Sbjct: 119 -------------GEKVLASLI----IRLALAETFGSNCGILALDEPTTNLDEENIEESL 161
Query: 298 ---LEGYLGKQDVPMVIISHDRAFLDQLCTKIVE---TEMGVSR 335
+E +++ +++I+HD +D I SR
Sbjct: 162 AEIIEERKSQKNFQLIVITHDEELVDAA-DHIYRVEKDGRQKSR 204
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 49/157 (31%), Positives = 63/157 (40%), Gaps = 39/157 (24%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG----LEKPRG- 478
++T +L R + +L IE G TA++G NG GKSTLLK + G PRG
Sbjct: 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGA 60
Query: 479 ---GEVLL-GEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGR----- 529
G+V L GE P A L + VL A+ A + +I LLGR
Sbjct: 61 RVTGDVTLNGE----P--LAAIDAPRLARLRAVLPQAAQPAFAFSAREIV-LLGRYPHAR 113
Query: 530 -----------------CNFKADMLD-RKVSLLSGGE 548
A L R V+ LSGGE
Sbjct: 114 RAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGE 150
|
Length = 272 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-05
Identities = 59/247 (23%), Positives = 101/247 (40%), Gaps = 66/247 (26%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+++EN+S Y VLK+V+++VK GEK+G+VG GAG
Sbjct: 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAG-------------------- 46
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK------LERVQKALESAVDD 209
KS + +A F+ A + ++EI G LE ++ +L D
Sbjct: 47 --KSTLILALFR--------------FLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQD 90
Query: 210 MDL-MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
L G + NLD D + + ++ G L S G + +
Sbjct: 91 PTLFSGTI------------RSNLDPFDEYSDEEIYGALRVSEGGLNL----SQGQRQLL 134
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD-RAFLDQLCTK 325
L + LL+ P +L+LDE T +D T ++ + + + ++ I+H R +D K
Sbjct: 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID--YDK 192
Query: 326 IVETEMG 332
I+ + G
Sbjct: 193 ILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (107), Expect = 4e-05
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 396 QEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRL--LFNRANLTIERGEKT 453
Q++ ++++ +K+ ++ + + +V I+N F Y +R + + NL I+R + T
Sbjct: 52 QKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVT 111
Query: 454 AIIGPNGCGKSTLLK 468
A IGP+GCGKST L+
Sbjct: 112 AFIGPSGCGKSTFLR 126
|
Length = 329 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 4e-05
Identities = 33/120 (27%), Positives = 43/120 (35%), Gaps = 35/120 (29%)
Query: 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG----EHNVLPN------YFEQNQAE 499
GE ++GPNG GKSTLL + G+ G + E Y Q Q
Sbjct: 25 GEILHLVGPNGAGKSTLLARMAGM-TSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTP 83
Query: 500 ALDL-----------DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGE 548
+ DKT E ++D+ G L D L R + LSGGE
Sbjct: 84 PFAMPVWHYLTLHQPDKTRTE---------LLNDVAGALAL----DDKLGRSTNQLSGGE 130
|
Length = 248 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 5e-05
Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 22/146 (15%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL- 483
+ + + Y L GE ++GP+G GKS+LL+++ LE PR G + +
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 484 GEHNVLPNYFEQNQAEALDLD-------------KTVLETVAEA-------AEDWRIDDI 523
G H L + TV E + EA ++D +
Sbjct: 63 GNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA 122
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEK 549
+ LL R DR LSGG++
Sbjct: 123 EKLLKRLRL-KPYADRYPLHLSGGQQ 147
|
Length = 242 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 53/253 (20%), Positives = 108/253 (42%), Gaps = 49/253 (19%)
Query: 94 ISSGVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
+ + ENI Y + VL ++ ++K GE +G+VG +G+GK+T +++ P
Sbjct: 452 LRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH 511
Query: 152 GNVIKAKSNMKI---AFLSQEFEVSM------SRTVREEFMSAFKEEMEIAGKLERVQKA 202
G V+ ++ I A+L ++ V + SR++R+ IA L
Sbjct: 512 GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRD----------NIA--LCNPGAP 559
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
E + L G +F + G+ + G++ S
Sbjct: 560 FEHVIHAAKLAGAH--DFISELPQ--------------------GYNTEVGEKGAN-LSG 596
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320
G + R+++ + L+ +P +L+ DE T+ LD ++ + + + + ++II+H + +
Sbjct: 597 GQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVR 656
Query: 321 QLCTKIVETEMGV 333
C +I+ E G
Sbjct: 657 A-CDRIIVLEKGQ 668
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 97 GVKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
G+ L+N+S +Y+ T L DV ++ G +G G+GK+T ++++ G P
Sbjct: 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 152 GNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
G+V I S+ ++ + +R++ F + Q E+ + D+
Sbjct: 62 GSVRVDD--TLITSTSKNKDI---KQIRKKVGLVF--------QFPESQLFEETVLKDVA 108
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
+ F + Q +A+A+ + L +G + ++ S G R+++
Sbjct: 109 FGPQ---NFGVSQEEAEALAREKLAL--------VGISESLFEKNPFELSGGQMRRVAIA 157
Query: 272 KILLQDPDLLLLDEPTNHLD 291
IL +P +L+LDEPT LD
Sbjct: 158 GILAMEPKILVLDEPTAGLD 177
|
Length = 280 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
SG +V+ ++L Y D + ++ I + TA+IGP+GCGKST L+ I
Sbjct: 35 SGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCI 85
|
Length = 285 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 427 IKNLEFGYEDRLLFNR-----ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
I+NL Y + F + N+ IE GE +IG G GKSTL++ + GL KP G++
Sbjct: 5 IENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI 64
Query: 482 LLGEHNV 488
++ ++
Sbjct: 65 IIDGVDI 71
|
Length = 287 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 6e-05
Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 56/208 (26%)
Query: 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ ++ SY G L ++ + + ++ ++G NGAGK+T R G +P SG+V+
Sbjct: 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLI 63
Query: 157 -----AKSNMK-------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIA-GKLERVQKAL 203
K N++ + F + + ++ S TV E +IA G +
Sbjct: 64 RGEPITKENIREVRKFVGLVFQNPDDQI-FSPTV----------EQDIAFGPIN------ 106
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
+G LDE +T+ +VS + LG + DR+ S G
Sbjct: 107 ---------LG--LDE-------------ETVAHRVSSALHMLGLE-ELRDRVPHHLSGG 141
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ R+++ ++ +P +L+LDEPT LD
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLD 169
|
Length = 277 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 6e-05
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
++ I+N Y ++ + I + + TAIIGP+GCGK+TLL+ I
Sbjct: 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSI 49
|
Length = 250 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 6e-05
Identities = 59/242 (24%), Positives = 99/242 (40%), Gaps = 67/242 (27%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRI------------IAG 145
+++ ++ S+ V VL V E+ L+G +G+GK+T LR+ ++G
Sbjct: 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSG 63
Query: 146 QEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL--------- 196
+ D ++ K M + L + ++ +S F E + + KL
Sbjct: 64 EVYLDGQDIFK----MDVIELRRRVQMVFQIPNPIPNLSIF-ENVALGLKLNRLVKSKKE 118
Query: 197 --ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254
ERV+ ALE A +L DE D LDA KL
Sbjct: 119 LQERVRWALEKA--------QLWDEVK-----------DRLDAPAGKL------------ 147
Query: 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL--GKQDVPMVII 312
S G Q R+ + + L P++LL DEPT +LD + +E K+D+ +V++
Sbjct: 148 ------SGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLV 201
Query: 313 SH 314
+H
Sbjct: 202 TH 203
|
Length = 250 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 7e-05
Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 38/191 (19%)
Query: 96 SGVKLENISKSYKGVTV-LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++L N+ +Y+ + + +K+GE V L+G NG+GK+T ++ G +P SG +
Sbjct: 321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214
+ + + +S A +LE +K + D L
Sbjct: 381 L----------------------LDGKPVS--------AEQLEDYRKLFSAVFSDYHL-- 408
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274
FD L + ++ + +L + +DG S+G + R++L L
Sbjct: 409 -----FDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLAL 463
Query: 275 LQDPDLLLLDE 285
L++ D+L+LDE
Sbjct: 464 LEERDILVLDE 474
|
Length = 546 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 7e-05
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
+ Y +L+ +++ + G + L G NGAGKTT L++IAG P+ G ++ + ++
Sbjct: 6 ELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI 65
Query: 162 K 162
K
Sbjct: 66 K 66
|
Length = 200 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+++E+IS Y LKDV++ V +GE V +VG NG+GK+T +++ G P++G +
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
|
Length = 279 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 7e-05
Identities = 59/260 (22%), Positives = 106/260 (40%), Gaps = 69/260 (26%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
+ + + G+ + +V EV++ E V L+G NGAGKTT + G +P G +
Sbjct: 7 SVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRG 66
Query: 155 --IKAKSNMKIAFLS-----QEFEVSMSRTVREEFMSAFKEEME---IAGKL------ER 198
I+ +IA + Q + TV E + A ++++ +G L
Sbjct: 67 QHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRA 126
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
+AL+ A ++ +G L + R QA NL
Sbjct: 127 ESEALDRAATWLERVGLL----EHANR--QAGNL-------------------------- 154
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPT---NHLDLDTIEWLEGYLGKQ-DVPMVIISH 314
+ G Q R+ + + ++ P++L+LDEP N + ++ L L + +V +++I H
Sbjct: 155 --AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEH 212
Query: 315 DRAFLDQLCTKIVETEMGVS 334
D K+V MG+S
Sbjct: 213 D--------MKLV---MGIS 221
|
Length = 255 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 7e-05
Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 28/223 (12%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+K+EN++ Y LK+V+ ++ K L+G +G GK+T +R + + I+
Sbjct: 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEG 72
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
K +++ + E + + + ++ S D++ R+
Sbjct: 73 KVSIE------------GEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRI- 119
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA---SFSSGWQMRMSLGKIL 274
N LD V + + DRL + S S G Q R+ + + L
Sbjct: 120 ----------HGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTL 169
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
P ++L DEPT+ LD + +E + K+D +VI++H+
Sbjct: 170 AVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHN 212
|
Length = 258 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-05
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
F + L FS G + R++L +ILLQD ++LLDEPT LD T
Sbjct: 87 FDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPIT 133
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 8e-05
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLE---GYLGKQDVPMVIISHDR 316
S G + R+ L + L +P +L+LDEP +HLD++ L L ++I+H
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156
Query: 317 AFLDQLCTKIVETEMGV 333
L +I+ E G
Sbjct: 157 ETL-ASADRILVLEDGR 172
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 8e-05
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
+ + NL F Y+ + + ++ I + + TAIIGP+GCGKST LK
Sbjct: 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLK 51
|
Length = 261 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 8e-05
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
+++ +NL Y D N N+ I + TA+IGP+GCGKST L+ +
Sbjct: 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTL 53
|
Length = 254 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 9e-05
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
+ ++NL ++D + NL I + TA+IGP+GCGKST ++ +
Sbjct: 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTL 49
|
Length = 250 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ I+ + + D+ + + + GE ++GPNG GK+T ++I+GL +P GE+
Sbjct: 3 LEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI 59
|
Length = 300 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 50/226 (22%), Positives = 106/226 (46%), Gaps = 38/226 (16%)
Query: 102 NISKSYKGV---TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKA 157
NIS+ Y + +LKD+T ++ G++G +G+GK+T L+++ E DS K
Sbjct: 12 NISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDS----KI 67
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIA--GKLERVQKALES-AVDDMDLMG 214
K + K+ + ++ + +R+E F++ + + L+S + + +
Sbjct: 68 KVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIK 127
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VASFSSGWQMRMSLG 271
++++E + ++G + DRL + S G Q R+++
Sbjct: 128 KIVEE----------------------CLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIA 165
Query: 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
+ L P +LL+DEPT+ +D+ + +E + K ++ +VI+SH+
Sbjct: 166 RALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHN 211
|
Length = 257 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 43/239 (17%)
Query: 91 ASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-- 148
S ++ ++ Y G LK++ V + + L+G +G GK+T LR +
Sbjct: 10 VSPTQQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLY 69
Query: 149 PDS---GNVIKAKSNMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKA 202
P + G +I N+ I LS E EV M ++ + + F + +
Sbjct: 70 PGNHYEGEIILHPDNVNI--LSPEVDPIEVRMRISMVFQKPNPFPKSI------------ 115
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VAS 259
E+ + + G ++R++ L+ +V + + DRL +
Sbjct: 116 FENVAYGLRIRG--------VKRRS------ILEERVENALRNAALWDEVKDRLGDLAFN 161
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHD 315
S G Q R+ + + L DP++LL DEPT+ LD +IE L L K V ++I++H+
Sbjct: 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL-KNKVTILIVTHN 219
|
Length = 265 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
++KNL Y + + NL I + E TA IGP+GCGKST L+
Sbjct: 7 SVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLR 49
|
Length = 251 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 401 IEKPF------QRKQMKIRFPERGRSGRSVVTIKNLEFGYE-DRLLFNRANLTIERGEKT 453
+EK F P V N+ F Y+ R + N + TI G+
Sbjct: 233 MEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTV 292
Query: 454 AIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
AI+G +G GKST+L+L+ G + +
Sbjct: 293 AIVGESGAGKSTILRLLFRFYDVNSGSITI 322
|
Length = 497 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 55/234 (23%), Positives = 98/234 (41%), Gaps = 54/234 (23%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
++++ Y +K+V +V++G L+G +G GKTT LR I + G A+
Sbjct: 8 QDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPG----ARVT 63
Query: 161 MKIAFLSQEF------EVSMSRTVREEF--------MSAFKEEMEIAGKLERVQKALESA 206
+I Q+ V+M R V F MS F ++
Sbjct: 64 GRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVF-----------------DNV 106
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VASFSSG 263
V + L G + D L++ +++ L +V DRL S G
Sbjct: 107 VAGLKLAG-IRDRDHLMEVAERSLRGAALWDEVK-------------DRLKTPATGLSGG 152
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
Q R+ + + L +P++LL+DEPT+ LD + +E + K+ ++I++H+
Sbjct: 153 QQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHN 206
|
Length = 252 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKL---IMGLEKP 476
+ +K+L F Y ++ I R + TAIIGP+GCGKST +K I LE P
Sbjct: 8 IKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGP 62
|
Length = 259 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL 489
N + GE +GPNG GK+T ++++ L +P G + ++V+
Sbjct: 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVV 58
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-04
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 262 SGWQM-RMSLGKILLQDPDLLLLDEPTNHLDLDT-IEWLEGYLG-KQDVPMVIISHDRAF 318
SG Q R+++ + LL+DP +L+LDE T+ LD +T LE + +++I+H +
Sbjct: 98 SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLS- 156
Query: 319 LDQLCTKIVETEMG 332
+ +I+ + G
Sbjct: 157 TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502
G+ A++G NG GKSTLLK++ G +P G +L+ F + AL
Sbjct: 25 FDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG---QEMRF-ASTTAALA 78
|
Length = 501 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+LT+ GE A+ GP+G GKSTLLK + P G +L
Sbjct: 24 LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRIL 66
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 56/237 (23%), Positives = 90/237 (37%), Gaps = 53/237 (22%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV------ 154
E ++ Y TV +++T E+ G ++G NG GK+T LR ++ P G+V
Sbjct: 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEH 70
Query: 155 ----IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDM 210
+ +I L+Q TV+E + R +K E AV
Sbjct: 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPL---FTRWRKEDEEAV--- 124
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
+K M G T D+ V + S G + R +
Sbjct: 125 -----------------------------TKAMQATGIT-HLADQSVDTLSGGQRQRAWI 154
Query: 271 GKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+L Q+ ++LLDEPT LD +D +E L ++ + + HD L+Q C
Sbjct: 155 AMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHD---LNQAC 208
|
Length = 265 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+L I GE AI+G +G GKSTL+ ++ L+KP G
Sbjct: 28 SLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
|
Length = 648 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 54/226 (23%), Positives = 100/226 (44%), Gaps = 41/226 (18%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
+++E++ YK G LK ++ + +G K L+G NGAGK+T L + G P G
Sbjct: 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRG---- 60
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL---- 212
++ + +E + VR + F++ + Q + DD+
Sbjct: 61 -----RVKVMGREVNAENEKWVRSKVGLVFQDPDD--------QVFSSTVWDDVAFGPVN 107
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
MG LD+ ++ +R +A L + D D+ S G + R+++
Sbjct: 108 MG--LDKDEVERRVEEA--LKAVRMW------------DFRDKPPYHLSYGQKKRVAIAG 151
Query: 273 ILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHD 315
+L DPD+++LDEP +LD +T+ + L Q +++ +HD
Sbjct: 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHD 197
|
Length = 274 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ K + + + + ++ E G I+GP+G GKSTL+KLI L P G +L+
Sbjct: 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62
|
Length = 241 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG 145
+ L N SY +L +++W+V GE +VG NGAGK+T L +I G
Sbjct: 261 IVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308
|
Length = 490 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 50/231 (21%), Positives = 93/231 (40%), Gaps = 43/231 (18%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSG 152
++++++S Y + D++ +++K L+G +G GK+T LR I + G
Sbjct: 22 LEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEG 81
Query: 153 NVIKAKSNM---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL--ERVQKALESAV 207
++ N+ I ++ E+ M F + + A K ER + L+ V
Sbjct: 82 EILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIV 141
Query: 208 DDMDLMGRLLDEF-DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
++ L DE D L A S S G Q
Sbjct: 142 EESLTKAALWDEVKDRLHSSA------------------------------LSLSGGQQQ 171
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
R+ + + L P +LLLDEP + LD + +E + K++ ++I++H+
Sbjct: 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHN 222
|
Length = 268 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 98 VKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+K+EN++ Y T L +V E++ GE VGL+G G+GK+T ++ + G +P SG
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 153 NVI 155
+I
Sbjct: 63 KII 65
|
Length = 287 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 52/222 (23%), Positives = 88/222 (39%), Gaps = 32/222 (14%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+EN+ Y LK + + + L+G +G GK+T LR + + G I K
Sbjct: 6 IENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKL 65
Query: 160 NMKIAFLSQEFEVSMSR-TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
M + +V+ R V F M I E V L
Sbjct: 66 TMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSI---YENVAYGL--------------- 107
Query: 219 EFDLLQRKAQAV-NLDTLDAKVSKLMPELGFTADDGDRLVA---SFSSGWQMRMSLGKIL 274
+AQ + + LD V + + + DRL + S G Q R+ + + +
Sbjct: 108 -------RAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI 160
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISH 314
+PD++L+DEPT+ LD +E + K++ +VI++H
Sbjct: 161 AMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTH 202
|
Length = 249 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 45/195 (23%), Positives = 74/195 (37%), Gaps = 58/195 (29%)
Query: 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--------------QEEPDSGNVIKAKSN 160
+ + ++++GE L+G++G+GK+T LR + G D N A
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 161 M----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+++ + Q+F + RTV E AF EM+ K ER ++ E
Sbjct: 102 RLRTHRVSMVFQQFALLPWRTVEENV--AFGLEMQGMPKAERRKRVDE------------ 147
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+ + V L A DR S G Q R+ L +
Sbjct: 148 ---------QLELVGL-----------------AQWADRKPGELSGGMQQRVGLARAFAT 181
Query: 277 DPDLLLLDEPTNHLD 291
+ +LL+DEP + LD
Sbjct: 182 EAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKPRGGE 480
KNL Y ++ N NL I + TA+IGP+GCGKST L+ LI ++ GE
Sbjct: 8 KNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIE--GE 65
Query: 481 VLLGEHNV 488
VLL N+
Sbjct: 66 VLLDGKNI 73
|
Length = 251 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
R + NL I+ G+ A++G +G GK+TLL++I+G +K RG E
Sbjct: 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEK 440
|
Length = 593 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGE 485
L ++RGE A+IG +G GKSTLL ++ GL+ GEV L+G+
Sbjct: 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQ 72
|
Length = 228 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 29/224 (12%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ +++ SY L ++ + ++ E L+G +G GK+T LR + + D N+
Sbjct: 5 ISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMND-DIENI--- 60
Query: 158 KSNMKIAFLSQEFEVSMSRTV--REEFMSAFKEEMEIAGKL-ERVQKALESA-VDDMDLM 213
K +I F Q S V R+E F++ + + V L+ A V D +L+
Sbjct: 61 KITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELI 120
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
+ ++E K + + E T D+ DR +FS G Q R+ + +
Sbjct: 121 DQRVEE----------------SLKQAAIWKE---TKDNLDRNAQAFSGGQQQRICIARA 161
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
L P ++LLDEPT+ LD + +E L K ++++H+
Sbjct: 162 LAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHN 205
|
Length = 251 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 3e-04
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
S +++++N+ Y I RG+ TA+IGP+GCGKST+L+ +
Sbjct: 9 SKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSL 59
|
Length = 269 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 38/128 (29%)
Query: 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH---------------NVLPNYFE 494
G+ ++GPNG GKST LK++ G KP LG+ + L NYF
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKPN-----LGKFDDPPDWDEILDEFRGSELQNYFT 80
Query: 495 QNQAEALD--------------LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRK 540
+ + + V E + + E ++D++ L + +LDR
Sbjct: 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRH----VLDRN 136
Query: 541 VSLLSGGE 548
+ LSGGE
Sbjct: 137 IDQLSGGE 144
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
+L++ GE + GP+G GKSTLL+ + P G++L+ H
Sbjct: 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILV-RH 72
|
Length = 235 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 4e-04
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPM 309
D L +FS G Q R+ + + L+ P L+ +DEPT LD+ ++ L G + + + +
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205
Query: 310 VIISHDRA 317
VI++HD A
Sbjct: 206 VIVTHDLA 213
|
Length = 258 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
N E+G+ AI+G G GKSTL++ I L KP G V + +
Sbjct: 27 NTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDD 68
|
Length = 286 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 65/239 (27%), Positives = 104/239 (43%), Gaps = 72/239 (30%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++L ++++S T L ++ EV+ GE + LVG NGAGK+T L +AG SG++
Sbjct: 4 MQLNDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGSGSIQFA 58
Query: 155 ---IKAKSNMKI----AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
++A S ++ A+LSQ+ + V +++ + + L V AL A+
Sbjct: 59 GQPLEAWSATELARHRAYLSQQQTPPFAMPVW-HYLTLHQPDKTRTELLNDVAGAL--AL 115
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG-WQM 266
DD +LG R S G WQ
Sbjct: 116 DD-----------------------------------KLG-------RSTNQLSGGEWQ- 132
Query: 267 RMSLGKILLQ-----DPD--LLLLDEPTNHLDL---DTIEWLEGYLGKQDVPMVIISHD 315
R+ L ++LQ +P LLLLDEP N LD+ ++ L L +Q + +V+ SHD
Sbjct: 133 RVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHD 191
|
Length = 248 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
I+NL+ Y + NL I + TA+IGP+GCGKSTLL+
Sbjct: 6 IENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLR 47
|
Length = 249 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL-LGEH 486
L + GE ++G +GCGKST + I+GL K GEV LG+
Sbjct: 41 TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84
|
Length = 331 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 4e-04
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 409 QMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
Q ++ E+G S ++ L G +D A+L IE GE I+G +G GKST+++
Sbjct: 19 QRAFKYIEQGLSKEQILEKTGLSLGVKD------ASLAIEEGEIFVIMGLSGSGKSTMVR 72
Query: 469 LIMGLEKPRGGEVLL 483
L+ L +P G+VL+
Sbjct: 73 LLNRLIEPTRGQVLI 87
|
Length = 400 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 52/203 (25%), Positives = 79/203 (38%), Gaps = 61/203 (30%)
Query: 106 SYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRI------------IAGQE--EPDS 151
S G T+ + + + G+++ LVG +GAGKT+ L I G E E D
Sbjct: 359 SPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELD- 417
Query: 152 GNVIKAKSNMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
++++ Q T+R+ + + + E++Q+ALE+A
Sbjct: 418 ----PESWRKHLSWVGQNPQLPHG----TLRDNVLLGNPDASD-----EQLQQALENA-- 462
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
+ EF LDT +G D L S G R+
Sbjct: 463 -------WVSEF----LPLLPQGLDT----------PIG---DQAAGL----SVGQAQRL 494
Query: 269 SLGKILLQDPDLLLLDEPTNHLD 291
+L + LLQ LLLLDEPT LD
Sbjct: 495 ALARALLQPCQLLLLDEPTASLD 517
|
Length = 588 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 4e-04
Identities = 20/47 (42%), Positives = 25/47 (53%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
+ V I + Y NL+I E TAIIGP+GCGKST +K
Sbjct: 10 QEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIK 56
|
Length = 259 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 5e-04
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473
++++ ++ L + + +L I GE A++GP+G GKSTLL+ + GL
Sbjct: 2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL 53
|
Length = 262 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 5e-04
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKL 469
+++ F Y D ++ IE A IGP+GCGKST L+L
Sbjct: 7 RDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRL 48
|
Length = 250 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 5e-04
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
+ ++T ++ Y +L + E TA+IGP+GCGKST L+
Sbjct: 2 AKKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLR 49
|
Length = 252 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 5e-04
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-----G 479
+ I+ + F Y + N+ + TAIIGP+GCGKSTLL+ + + G
Sbjct: 5 IKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEG 64
Query: 480 EVLLGEHNVL-PN 491
VLL N+ PN
Sbjct: 65 AVLLDNENIYSPN 77
|
Length = 251 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 6e-04
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
L G+ +IIG +G GKST L+ I LEKP G + + +
Sbjct: 27 LQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEI 70
|
Length = 256 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 6e-04
Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 49/219 (22%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
G VL+D+++ V+ G++VGL+G G+GK+T L + + LS
Sbjct: 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL-------------------LRLLST 1271
Query: 169 EFEVSMS---------RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
E E+ + +T R+ F ++ +G + ++D + DE
Sbjct: 1272 EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRK----------NLDPYEQWSDE 1321
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279
+ + A+ V L ++ + + +L F DG ++ S+G + M L + +L
Sbjct: 1322 --EIWKVAEEVGLKSV---IEQFPDKLDFVLVDGGYVL---SNGHKQLMCLARSILSKAK 1373
Query: 280 LLLLDEPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDR 316
+LLLDEP+ HLD T++ + L KQ VI+S R
Sbjct: 1374 ILLLDEPSAHLDPVTLQIIRKTL-KQSFSNCTVILSEHR 1411
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR----GGEVLLGEHNVLPNYFEQNQA 498
NL+++RGE A++G +G GKS I+GL P GE+LL +LP
Sbjct: 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHI 64
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 6e-04
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 420 SGRSVVTI--KNLE-FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476
+ VTI ++LE + + L N T+ G++ A++GP+G GK++LL ++G
Sbjct: 343 ASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPY 402
Query: 477 RG 478
+G
Sbjct: 403 QG 404
|
Length = 588 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 45/162 (27%), Positives = 63/162 (38%), Gaps = 49/162 (30%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MGLEKPRG---G 479
+ +K+L Y NL IE TA IGP+GCGKST+L+ + M P G
Sbjct: 5 IDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEG 64
Query: 480 EVLLGEHNVL-------------------PNYF-----EQNQAEALDLD----KTVLETV 511
EVLL ++ PN F N L L+ K L+ +
Sbjct: 65 EVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDEL 124
Query: 512 AE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
E A W +++K D LD+ LSGG++
Sbjct: 125 VEKSLRGANLW--NEVK----------DRLDKPGGGLSGGQQ 154
|
Length = 258 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 7e-04
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISH 314
+ L ++ LL+LDEPT L +E L L Q V ++ ISH
Sbjct: 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 7e-04
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
L F + +F + ++ GE + G NG GK+TLL+++ GL G++ +
Sbjct: 17 LAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTA 75
|
Length = 214 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 7e-04
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
G V+ ++ L + + GE I G G G++ L + + GL P GE
Sbjct: 1 GEPVLEVRGLSVK----GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGE 56
Query: 481 VLL 483
+ L
Sbjct: 57 ITL 59
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 7e-04
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
+ ++NL Y ++ ++ I + TA+IGP+GCGKST ++
Sbjct: 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIR 56
|
Length = 258 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 7e-04
Identities = 53/224 (23%), Positives = 89/224 (39%), Gaps = 34/224 (15%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
N++ + G TVL V+ L+G G+GKTT LR + + SG
Sbjct: 26 NLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSG--------- 76
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEI---AGKLERVQKALESAVDDMDLMGRLLD 218
+ S + + +++ +E G L + ++ D L G
Sbjct: 77 --------YRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAG---- 124
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS---FSSGWQMRMSLGKILL 275
R + V + E+G DRL S S G Q + L + L
Sbjct: 125 -----VRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLA 179
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRA 317
+P++LLLDEPT+ LD T E +E ++ + ++I++H+ A
Sbjct: 180 VNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLA 223
|
Length = 276 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 60/245 (24%), Positives = 106/245 (43%), Gaps = 61/245 (24%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD----SGNV 154
+++N+ S +LK + + KGE ++G NG+GK+T ++IAG P G++
Sbjct: 9 EIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH--PAYKILEGDI 66
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214
+ ++ L E E R F+ AF+ +EI G V + D +
Sbjct: 67 LFKGESI----LDLEPE---ERAHLGIFL-AFQYPIEIPG------------VSNADFL- 105
Query: 215 RL----------LDEFD------LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
RL L E D ++ K + V +D L ++G
Sbjct: 106 RLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPS---------FLSRNVNEG----- 151
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL-EGY--LGKQDVPMVIISHD 315
FS G + R + ++ L D +L +LDE + LD+D ++ + EG L + +++I+H
Sbjct: 152 -FSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHY 210
Query: 316 RAFLD 320
+ LD
Sbjct: 211 QRLLD 215
|
Length = 252 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 9e-04
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
++++ K++ Y + + +L E E TA+IGP+GCGKST L+ +
Sbjct: 2 ENIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCL 50
|
Length = 251 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRGGEVL 482
+ +KNL ++ + + + TIE GE I+G +G GKS L+ ++ G++ +P G ++
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 42/224 (18%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L+N+ +L ++++ ++ GE + G +G GK+T L+I+A P SG ++
Sbjct: 10 LQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE 69
Query: 160 NMKIAFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+ I+ L E +VS F + + ++ Q D +
Sbjct: 70 D--ISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQP-------DPAIFLDD 120
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
L+ F L L +++L S G + R+SL + L
Sbjct: 121 LERFALPD--------TILTKNIAEL------------------SGGEKQRISLIRNLQF 154
Query: 277 DPDLLLLDEPTNHLDLDTI----EWLEGYLGKQDVPMVIISHDR 316
P +LLLDE T+ LD E + Y+ +Q++ ++ ++HD+
Sbjct: 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDK 198
|
Length = 225 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.001
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++ GE I+GPNG GK+T +K++ G P G
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND 56
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+++ L Y R + + GE I+G +G GK+TLL + P GEV
Sbjct: 8 SVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH 64
|
Length = 258 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.001
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
S G Q R++ ++LL P + LDE T+ LD ++
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEES 126
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 44/188 (23%), Positives = 87/188 (46%), Gaps = 33/188 (17%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE 169
V L V++ +++G+ + +VG +G GK+T R++ E P G + ++ A E
Sbjct: 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA--DPE 85
Query: 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229
+ + + ++ F + + G L +K +G++L+E
Sbjct: 86 AQKLLRQKIQIVFQNPY-------GSLNPRKK-----------VGQILEE-------PLL 120
Query: 230 VNLDTLDA-----KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+N L A K +M ++G + DR FS G + R+++ + L+ DPD+++ D
Sbjct: 121 INTS-LSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVAD 179
Query: 285 EPTNHLDL 292
EP + LD+
Sbjct: 180 EPVSALDV 187
|
Length = 327 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 98 VKLENISKSY------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
+K +N+S Y L DV EVKKGE + ++G NG+GK+T + + P
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 152 GNVI 155
G V
Sbjct: 65 GKVY 68
|
Length = 280 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.001
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLL----KLIMGLEKPR 477
+ + I++L+ + + + NL I TA++GP+G GKSTLL +LI + R
Sbjct: 1 MNKIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 478 -GGEVLL 483
GEV L
Sbjct: 61 VSGEVYL 67
|
Length = 250 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.001
Identities = 44/221 (19%), Positives = 98/221 (44%), Gaps = 23/221 (10%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++EN++ + +LK+V ++ K L+G +G GK+T +R +
Sbjct: 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLN------------- 50
Query: 158 KSNMKIAFLSQEFEVSMS-RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+ N I E + + + + + + ++ ++ +S D++ R+
Sbjct: 51 RMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRI 110
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
E D + + ++L K + L E+ D D+ S G Q R+ + + +
Sbjct: 111 HGEDD--EDFIEERVEESL--KAAALWDEV---KDKLDKSALGLSGGQQQRLCIARTIAV 163
Query: 277 DPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
P+++L+DEP + LD + +E + K+D +VI++H+
Sbjct: 164 SPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.001
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK--PRG---GEV 481
+ L F Y N+ + + TA+IGP+GCGKST L+ + P GE+
Sbjct: 19 VNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEI 78
Query: 482 LLGEHNV 488
+L NV
Sbjct: 79 ILHPDNV 85
|
Length = 265 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.001
Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 58/221 (26%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--------------IKAK 158
+KD + +++GE ++G++G+GK+T +R++ EP G V ++
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
KIA + Q F + TV + +AF E+ ER +KAL++
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDN--TAFGMELAGINAEERREKALDA------------- 148
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
+ V L+ + D L S G + R+ L + L +P
Sbjct: 149 --------LRQVGLEN-------------YAHSYPDEL----SGGMRQRVGLARALAINP 183
Query: 279 DLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHD 315
D+LL+DE + LD + + L K +V ISHD
Sbjct: 184 DILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224
|
Length = 400 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
V+ +NL Y L L I + + TA IGP+GCGKST+L+
Sbjct: 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILR 54
|
Length = 264 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 45/191 (23%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE-----EPD---SGNVIKAKSNMKI 163
+L++VT + G L+GV+GAGKTT + ++AG++ E D SG K ++ +I
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 954
Query: 164 AFLSQEFEV-SMSRTVREEFM-SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+ ++ ++ S TVRE + SAF + K E++ +DE
Sbjct: 955 SGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKM---------------MFVDEV- 998
Query: 222 LLQRKAQAVNLDTL-DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
+ V LD L DA V G V S+ + R+++ L+ +P +
Sbjct: 999 -----MELVELDNLKDAIV-------------GLPGVTGLSTEQRKRLTIAVELVANPSI 1040
Query: 281 LLLDEPTNHLD 291
+ +DEPT+ LD
Sbjct: 1041 IFMDEPTSGLD 1051
|
Length = 1470 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
L + + G I GPNGCGKS+L +++ L GG
Sbjct: 467 LIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGG 507
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.001
Identities = 58/238 (24%), Positives = 108/238 (45%), Gaps = 43/238 (18%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
G VL+++++ + G++VGL+G G+GK+T L ++ + +++I
Sbjct: 16 GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFL--------RLLNTEGDIQID---- 63
Query: 169 EFEVSMSRTVREEFMSAF----KEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224
VS + +++ AF ++ +G + ++D G+ DE +
Sbjct: 64 --GVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRK----------NLDPYGKWSDE--EIW 109
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+ A+ V L ++ + + +L F DG ++ S G + M L + +L +LLLD
Sbjct: 110 KVAEEVGLKSV---IEQFPGQLDFVLVDGGCVL---SHGHKQLMCLARSVLSKAKILLLD 163
Query: 285 EPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDR--AFLDQLCTKIVETEMGVSRTYE 338
EP+ HLD T + + L KQ VI+S R A L+ C + + E R Y+
Sbjct: 164 EPSAHLDPITYQVIRKTL-KQAFADCTVILSEHRIEAMLE--CQRFLVIEENKVRQYD 218
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 409 QMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNR-ANLTIERGEKTAIIGPNGCGKSTLL 467
+++ P G V+ +++L + + + + GE I G G G+S L+
Sbjct: 243 VLRVVKPPS-TPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELV 301
Query: 468 KLIMGLEKPRGGEVLLGEHNVLPNY 492
+ I GL KP G +LL +VL
Sbjct: 302 EAISGLRKPASGRILLNGKDVLGRL 326
|
Length = 501 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.002
Identities = 19/66 (28%), Positives = 38/66 (57%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +T KNL Y+ R + +LT+ GE ++GPNG GK+T +++G+ G ++
Sbjct: 2 ATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNII 61
Query: 483 LGEHNV 488
+ + ++
Sbjct: 62 IDDEDI 67
|
Length = 241 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.002
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ KN+ Y + + +I+ GEK I+G G GKS+LL + L + G +L
Sbjct: 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL 62
Query: 483 LGEHN 487
+ +
Sbjct: 63 IDGVD 67
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
NL IE+GE AI G G GK++LL LI+G +P G++
Sbjct: 57 NLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI 94
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.002
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+ R LF+ +L +++G TA+IG G GKSTLL+ + GL +P G+V +G+
Sbjct: 17 FASRALFD-IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGD 67
|
Length = 288 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 7/68 (10%)
Query: 254 DRLVAS---FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-LDT--IEWLEGYLGKQDV 307
DRL S S G Q R+ + + L +P++LL+DEPT+ LD + T IE L L K+D
Sbjct: 138 DRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL-KKDY 196
Query: 308 PMVIISHD 315
+VI++H+
Sbjct: 197 TIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 42/141 (29%), Positives = 60/141 (42%), Gaps = 29/141 (20%)
Query: 430 LEFGYEDRL--LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
LE ++ +L L NLT+ TAI G +G GK++L+ I GL +P+ G ++L
Sbjct: 2 LELNFKQQLGDLCLTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGR- 60
Query: 488 VLPNYFEQNQAEALDLDK----------------TV---LETVAEAAEDWRIDDIKGLLG 528
VL F+ + L +K V L + + D I LLG
Sbjct: 61 VL---FDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLG 117
Query: 529 RCNFKADMLDRKVSLLSGGEK 549
+LDR LSGGEK
Sbjct: 118 ----IEPLLDRYPGSLSGGEK 134
|
Length = 352 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.002
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
Y D+ NL ++RG A+IGP+GCGK+T L+ I
Sbjct: 14 YGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAI 50
|
Length = 252 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.002
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 254 DRLVA---SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-LDTIEWLEGYLG-KQDVP 308
DRL S S G Q R+ + + L +PD+LL+DEPT+ LD + T + E L K+
Sbjct: 147 DRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYT 206
Query: 309 MVIISHD 315
+VI++H+
Sbjct: 207 IVIVTHN 213
|
Length = 259 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 51/213 (23%), Positives = 98/213 (46%), Gaps = 47/213 (22%)
Query: 96 SGVKLENIS-KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+G+K ENI + G +++ +++EV G + + G NG GK++ RI+ P G
Sbjct: 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGEL-WPVYGGR 508
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEF---MSAFKEEMEIAGKLERVQKALESAVDDMD 211
+ + K+ ++ Q +++ T+R++ S E+M+ G + K LE +D++
Sbjct: 509 LTKPAKGKLFYVPQRPYMTL-GTLRDQIIYPDS--SEDMKRRGLSD---KDLEQILDNVQ 562
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMS 269
L +L+R E G++A D D L S G + R++
Sbjct: 563 LT-------HILER-------------------EGGWSAVQDWMDVL----SGGEKQRIA 592
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL 302
+ ++ P +LDE T+ + +D +EGY+
Sbjct: 593 MARLFYHKPQFAILDECTSAVSVD----VEGYM 621
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 415 PERGR---SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
PER + G+ V KN Y + + N I TAIIGP+GCGKST L+ I
Sbjct: 27 PERKKVSGGGKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAI 85
|
Length = 286 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.002
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 31/206 (15%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-KIAFLSQEF 170
VL+ + + GEKVG+VG GAGK++ + E G +I N+ KI F
Sbjct: 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF 1360
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230
++++ ++ + +G L ++D + DE A+
Sbjct: 1361 KITIIP----------QDPVLFSGSLRM----------NLDPFSQYSDE-----EVWWAL 1395
Query: 231 NLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHL 290
L L VS L +L +G + S G + + L + LL+ +L+LDE T +
Sbjct: 1396 ELAHLKTFVSALPDKLDHECAEGGE---NLSVGQRQLVCLARALLRKTKILVLDEATAAV 1452
Query: 291 DLDTIEWLEGYLGKQ--DVPMVIISH 314
DL+T ++ + Q D ++ I+H
Sbjct: 1453 DLETDNLIQSTIRTQFEDCTVLTIAH 1478
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.002
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 392 LERLQE--EEQIEKPFQRKQMK--IRFPERGRSGRSVVTIKNLEFGYEDRL--LFNRANL 445
+ERL+E E + E P+Q ++ +P RGR V +N Y + L + N+
Sbjct: 1253 VERLKEYSETEKEAPWQIQETAPPSGWPPRGR-----VEFRNYCLRYREDLDLVLRHINV 1307
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
TI GEK I+G G GKS+L + + + GE+++ N+
Sbjct: 1308 TIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNI 1350
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
NLT+ GE A++G NG GKSTL+K++ G+ +P G + +
Sbjct: 25 NLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNI 67
|
Length = 510 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 47/235 (20%), Positives = 100/235 (42%), Gaps = 51/235 (21%)
Query: 76 EFENKKYSNKQSNTGASSISSGVKLENI-SKSYKGVTVLKDVTWEVKKGEKVGLVGVNGA 134
E +N+ ++ + N + + ++ N+ S+ K V +D+++ V +GE +G G+ G+
Sbjct: 245 ELQNR-FNAMKENVSNLAHETVFEVRNVTSRDRKKV---RDISFSVCRGEILGFAGLVGS 300
Query: 135 GKTTQLRIIAGQEEPDSGNV------IKAKSNMK-----IAFLSQEFEVSMSRTVREE-F 182
G+T + + G ++ G + I +S + +A++++ SR R+ F
Sbjct: 301 GRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITE------SR--RDNGF 352
Query: 183 MSAF--KEEMEIAGKLERVQ-KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239
F + M I+ L+ K ++D ++ +LL K +VN +
Sbjct: 353 FPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN------ 406
Query: 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ S G Q ++ + K L P++++ DEPT +D+
Sbjct: 407 -----------------ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGA 444
|
Length = 510 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 61/225 (27%)
Query: 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIIS 313
S G + R+ + LL P+LL+ DEPT LD L + L+ L + ++ I+
Sbjct: 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELN---MGLLFIT 214
Query: 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLI 373
H+ + + +L ++ + G R E N + + Y T+ L+
Sbjct: 215 HNLSIVRKLADRVAVMQNG--RCVEQNRAATLFSAPT---HPY------------TQKLL 257
Query: 374 NRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVV----TIKN 429
N +E + + E +Q+++ FP R + V +KN
Sbjct: 258 N-------------SEPSGDPVPLPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKN 304
Query: 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKST----LLKLI 470
+ F T+ GE ++G +G GKST LL+LI
Sbjct: 305 ISF-------------TLRPGETLGLVGESGSGKSTTGLALLRLI 336
|
Length = 529 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.003
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 254 DRL---VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-LDT--IEWLEGYLGKQDV 307
DRL S G Q R+ + + L P++LL+DEPT+ LD + T IE L L K+
Sbjct: 141 DRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITEL-KKKY 199
Query: 308 PMVIISH 314
+VI++H
Sbjct: 200 TIVIVTH 206
|
Length = 253 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 46/190 (24%), Positives = 76/190 (40%), Gaps = 43/190 (22%)
Query: 100 LENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
L N++ +Y + + +K+GE + L+G NG+GK+T ++ G +P SG +
Sbjct: 325 LRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI---- 380
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV-DDMDLMGRLL 217
L + V+ + E++ F SAV D L +LL
Sbjct: 381 ------LLDGK-PVTAEQ--PEDYRKLF------------------SAVFTDFHLFDQLL 413
Query: 218 DEFDLLQRKAQAVN--LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
+ V L+ L KL +DG S G + R++L L
Sbjct: 414 GP-EGKPANPALVEKWLERLKMA-HKL------ELEDGRISNLKLSKGQKKRLALLLALA 465
Query: 276 QDPDLLLLDE 285
++ D+LLLDE
Sbjct: 466 EERDILLLDE 475
|
Length = 547 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 254 DRLVAS---FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDV 307
DRL + S G Q R+ + + + +P++LLLDEPT+ LD IE L L K
Sbjct: 160 DRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITEL-KSKY 218
Query: 308 PMVIISH 314
+VI++H
Sbjct: 219 TIVIVTH 225
|
Length = 272 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.003
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 234 TLDAKVSKLMPELGFTADDGDRLVAS---FSSGWQMRMSLGKILLQDPDLLLLDEPTNHL 290
LD V K + + DRL S S G Q R+ + ++L P ++LLDEPT+ L
Sbjct: 120 VLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSAL 179
Query: 291 DLDTIEWLEG--YLGKQDVPMVIISH 314
D + +E K D M++++
Sbjct: 180 DPISAGKIEETLLGLKDDYTMLLVTR 205
|
Length = 252 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.003
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL--GKQDVPMVIISHD 315
S S G Q R+ + ++L PD++LLDEPT+ LD + +E L + +++++H
Sbjct: 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHS 206
|
Length = 252 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.003
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 384 RASSAEKKLERLQEEEQIE-KPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY--EDRLLF 440
+AS + K+L E++E +R+ +K P G S +T+ N F + +
Sbjct: 602 QASVSLKRLRIFLSHEELEPDSIERRTIK---PGEGNS----ITVHNATFTWARDLPPTL 654
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRGGEVLLGEHNVLP 490
N +I G A++G GCGKS+LL ++ ++K G + G +P
Sbjct: 655 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVP 705
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.003
Identities = 45/218 (20%), Positives = 81/218 (37%), Gaps = 38/218 (17%)
Query: 83 SNKQSNTGASSISSGV-KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLR 141
S QS++ + V ++E + Y G L DV ++ + + +G +G GK+T LR
Sbjct: 5 SRSQSDSATINPDHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLR 64
Query: 142 IIAGQEEPDSGNVIKAKSNM--------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIA 193
+ G ++ + +I + +V M F + E + A
Sbjct: 65 CFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFA 124
Query: 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253
+ + L+ V+D + +E D L K + L
Sbjct: 125 PRANGYKGNLDELVEDSLRRAAIWEEVK-----------DKLKEKGTAL----------- 162
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G Q R+ + + + PD+LL+DEP + LD
Sbjct: 163 -------SGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193
|
Length = 274 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 57/215 (26%), Positives = 95/215 (44%), Gaps = 54/215 (25%)
Query: 95 SSG-VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
SSG +K E++ Y+ VL +++E+ EKVG+VG GAGK++ L + E +
Sbjct: 1234 SSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293
Query: 152 GNVIKAKSNM---------KIAFLSQEFEVSMSRTVREEF-MSAFKE--EMEIAGKLERV 199
G ++ ++ K+ + + V S TVR F + F E + ++ LER
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVR--FNLDPFNEHNDADLWESLERA 1351
Query: 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
D+++R + LDA+VS E G +
Sbjct: 1352 HLK------------------DVIRRNSLG-----LDAEVS----EAG----------EN 1374
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
FS G + +SL + LL+ +L+LDE T +D+ T
Sbjct: 1375 FSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1409
|
Length = 1622 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 425 VTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +N+ F Y + N I G+ A++G +G GKST+ L+ GE+L
Sbjct: 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401
Query: 483 LGEHNV 488
L H++
Sbjct: 402 LDGHDL 407
|
Length = 582 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.003
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
G + +++++L+ Y D ++ I TA+IGP+GCGKST L+
Sbjct: 42 GDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLR 89
|
Length = 305 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.003
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLI 470
+L I TA IGP+GCGKST L+ +
Sbjct: 39 DLDIPEKTVTAFIGPSGCGKSTFLRCL 65
|
Length = 267 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ ++ GE + G G G+S L+KL+ G + G+V L
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYL 312
|
Length = 501 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ NL + A++G NG GKSTLLK + G+ + G +L
Sbjct: 15 DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILF 57
|
Length = 491 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.004
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G + R+S+ L+ +P LL LDEPT+ LD
Sbjct: 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
SK ++ D + + + G +G+GKTT +R+IAG PD G +
Sbjct: 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEI 54
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLM-----PELGFTADDGDRLVASFSSGWQMRMSLG 271
LD F R A L T+ + +L PEL +A S G Q + L
Sbjct: 367 LDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA---------IARLSGGNQQKAVLA 417
Query: 272 KILLQDPDLLLLDEPTNHLDLDT---IEWLEGYLGKQDVPMVIIS 313
K LL +P +L+LDEPT +D+ I L L +Q V +++IS
Sbjct: 418 KCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVIS 462
|
Length = 506 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 0.004
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311
++ S G Q R+ + + L +P+++LLDEPT+ LD + +E L + ++ +VI
Sbjct: 141 NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVI 200
Query: 312 ISHD 315
++H+
Sbjct: 201 VTHN 204
|
Length = 250 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 554 | |||
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.98 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.98 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.97 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.97 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.97 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.97 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.97 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.96 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.96 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.96 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.96 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.96 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.95 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.95 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.95 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.95 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.95 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.95 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.95 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.95 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.95 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.94 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.94 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.94 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.94 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.94 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.94 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.94 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.93 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.93 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.93 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.93 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.93 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.93 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.92 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.92 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.92 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.92 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.92 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.92 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.92 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.92 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.91 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.91 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.91 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.91 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.91 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.91 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.91 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.91 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.91 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.9 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.9 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.9 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.9 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.9 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.9 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.9 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.9 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.9 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.9 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.9 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.9 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.9 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.9 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.9 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.9 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.9 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.9 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.9 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.9 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.9 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.9 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.9 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.9 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.9 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.9 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.9 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.9 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.9 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.9 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.89 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.89 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.89 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.89 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.89 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.89 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.89 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.89 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.89 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.89 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.89 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.89 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.89 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.89 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.89 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.89 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.89 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.89 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.89 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 99.89 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.89 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.89 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.89 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.89 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.89 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.89 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.89 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.89 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.89 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.89 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.89 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.89 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.89 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.89 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.89 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.89 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.89 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.89 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.89 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.89 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.89 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.89 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.89 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.89 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.89 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.89 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.89 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.89 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.89 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.89 |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-85 Score=702.11 Aligned_cols=445 Identities=41% Similarity=0.683 Sum_probs=385.9
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccC
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~ 175 (554)
.+|+++|++++|+++++|+|+||+|.+|+++||||+||||||||||+|+|.+.|++|+|...+ +.+|+|++|++.....
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~-~~~v~~l~Q~~~~~~~ 80 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK-GLRVGYLSQEPPLDPE 80 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC-CceEEEeCCCCCcCCC
Confidence 468999999999999999999999999999999999999999999999999999999999874 4789999999999888
Q ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCC
Q 008771 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (554)
Q Consensus 176 ~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~ 255 (554)
.||.+.+..++..........+.+...+... .......+......++.|..+.++..+|..+|++.. ++
T Consensus 81 ~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~ 149 (530)
T COG0488 81 KTVLDYVIEGFGELRELLAELEEAYALLADP---------DDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DR 149 (530)
T ss_pred ccHHHHHHhhhHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cC
Confidence 8999999888776655555555444332211 112334444555566779999999999999999855 89
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCeee
Q 008771 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 256 ~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~ 335 (554)
++.+||||||.||+||+||+.+||+|||||||||||.+++.||.++|+++..|+||||||++|++++|++|+.++.|++.
T Consensus 150 ~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~ 229 (530)
T COG0488 150 PVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLT 229 (530)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCcee
Confidence 99999999999999999999999999999999999999999999999987679999999999999999999999999999
Q ss_pred eccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-chhhHHHHHHHHHHHHhhhhccccc-cccceee
Q 008771 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN-SGRASSAEKKLERLQEEEQIEKPFQ-RKQMKIR 413 (554)
Q Consensus 336 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~ 413 (554)
.|.|||+.|+++++.....+.+++++++++++++++++++...... +.+++++.+++++++......++.. .....+.
T Consensus 230 ~y~Gny~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~ 309 (530)
T COG0488 230 PYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFR 309 (530)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceee
Confidence 9999999999999999988889999999999999999998765433 3467778888888875322233332 3334456
Q ss_pred ccCCC-CCCCceEEEeeeeEecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEE
Q 008771 414 FPERG-RSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN 491 (554)
Q Consensus 414 ~~~~~-~~~~~~l~~~~l~~~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~ 491 (554)
|+... ..++.+++++|+++.|++ +.+++++||.|.+||+|||+||||+|||||||+|+|...|.+|+|.++ ..++++
T Consensus 310 f~~~~~~~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g-~~v~ig 388 (530)
T COG0488 310 FPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG-ETVKIG 388 (530)
T ss_pred ccCCcccCCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeC-CceEEE
Confidence 66655 478999999999999966 589999999999999999999999999999999999999999999996 569999
Q ss_pred EEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
||+|+.. .++++.|+.|++....+...+.+++.+|++|+|+++.+.+++..||||||.||+|
T Consensus 389 yf~Q~~~-~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~L 450 (530)
T COG0488 389 YFDQHRD-ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLL 450 (530)
T ss_pred EEEehhh-hcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHH
Confidence 9999974 4558889999999988766688999999999999999999999999999999875
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-76 Score=655.80 Aligned_cols=440 Identities=30% Similarity=0.516 Sum_probs=346.4
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCc
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~ 176 (554)
+|+++||+++|+++++|+||||+|.+|+++||||+||||||||||+|+|+++|++|+|.+++. ..|+|++|++.. ...
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~-~~i~~~~q~~~~-~~~ 78 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN-WQLAWVNQETPA-LPQ 78 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-CEEEEEecCCCC-CCC
Confidence 489999999999999999999999999999999999999999999999999999999999864 469999997533 235
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCC
Q 008771 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (554)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (554)
++.+++.............+... .. .... ..+..+.......+.+..+.++..+|..+||.....+++
T Consensus 79 ~~~~~v~~~~~~~~~l~~~~~~~----~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 79 PALEYVIDGDREYRQLEAQLHDA----NE-RNDG-------HAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHH----hc-cCCH-------HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 77666643221111110000000 00 0000 001111111122344566788999999999975567899
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCeeee
Q 008771 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336 (554)
Q Consensus 257 ~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~ 336 (554)
+.+|||||||||+||+||+.+|+||||||||||||+.++.||.++|+++++|||+||||++++..+||+|++|++|++..
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~ 226 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFE 226 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999989
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCchhhHHHHHHHHHHHHhhhhccccccccceeecc
Q 008771 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAG-ANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415 (554)
Q Consensus 337 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 415 (554)
|.|+|+.|..++......+...+++++++++++++++.+.... ..+.+++++.++++++.. ...+.......+.++
T Consensus 227 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~~---~~~~~~~~~~~~~~~ 303 (638)
T PRK10636 227 YTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMEL---IAPAHVDNPFHFSFR 303 (638)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhc---ccccccCCceeEecC
Confidence 9999999999888777778888899999999999998774321 122233444455554432 111111223455665
Q ss_pred CCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEec
Q 008771 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ 495 (554)
Q Consensus 416 ~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q 495 (554)
.....++++|+++|+++.|+++.+|+++||+|.+||++||+||||||||||+++|+|+++|++|+|.+++ .+.++|++|
T Consensus 304 ~~~~~~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~-~~~igy~~Q 382 (638)
T PRK10636 304 APESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK-GIKLGYFAQ 382 (638)
T ss_pred CCccCCCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC-CEEEEEecC
Confidence 5455678899999999999888899999999999999999999999999999999999999999999964 467899999
Q ss_pred ccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++...++++.|+.+++...........++.+|+.|+|..+.+++++..|||||||||+|
T Consensus 383 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~L 441 (638)
T PRK10636 383 HQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVL 441 (638)
T ss_pred cchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHH
Confidence 75445667789998875433333356789999999997767899999999999999975
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-74 Score=646.06 Aligned_cols=445 Identities=31% Similarity=0.530 Sum_probs=342.5
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCc
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~ 176 (554)
+|+++||+++|+++++|+||||+|++|+++||+|+||||||||+|+|+|+++|++|+|.+++ ...++|++|.+......
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~-~~~~~~l~q~~~~~~~~ 81 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ-DLIVARLQQDPPRNVEG 81 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC-CCEEEEeccCCCCCCCC
Confidence 68999999999988999999999999999999999999999999999999999999999986 45689999976543446
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCC
Q 008771 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (554)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (554)
++.+++...+............+...+.. ....+ .+..+..+.......+.+..+.++.++++.+||. .+++
T Consensus 82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~~~~ 153 (635)
T PRK11147 82 TVYDFVAEGIEEQAEYLKRYHDISHLVET-DPSEK----NLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---PDAA 153 (635)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHhcc-CchHH----HHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC---CCCc
Confidence 78877643321111111111111110000 00000 0111111111112233455677899999999996 3789
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCeeee
Q 008771 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336 (554)
Q Consensus 257 ~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~ 336 (554)
+.+|||||||||+||+||+.+|+||||||||||||+.++.||.++|++++.|||+||||++++..+||+|++|++|++..
T Consensus 154 ~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~ 233 (635)
T PRK11147 154 LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVS 233 (635)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999988
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhhccccccccceeeccC
Q 008771 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPE 416 (554)
Q Consensus 337 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 416 (554)
|.|+|++|..+++.....+..+++.++++++++.+++.+..... ..+..++.++++++.... ...+.......+.++.
T Consensus 234 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 311 (635)
T PRK11147 234 YPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKAR-RTRNEGRVRALKALRRER-SERREVMGTAKMQVEE 311 (635)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhHHHHHHHHHHhhhhh-ccccccCCceeEEeCC
Confidence 99999999999888777777777788888888888777622111 111233334444433111 1111112234455655
Q ss_pred CCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEecc
Q 008771 417 RGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN 496 (554)
Q Consensus 417 ~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~ 496 (554)
....++++|+++|+++.|+++.+|+++||+|.+||++||+||||||||||+++|+|+++|++|+|.+ |.++.++|++|+
T Consensus 312 ~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~ 390 (635)
T PRK11147 312 ASRSGKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQH 390 (635)
T ss_pred CCCCCCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCc
Confidence 4456788999999999998888999999999999999999999999999999999999999999999 566789999997
Q ss_pred cccCCCCCCCHHHHHHhhcccC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 497 QAEALDLDKTVLETVAEAAEDW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+ ..++++.||.+++....... ....++.+|+.|+|..+..++++..|||||||||+|
T Consensus 391 ~-~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~l 451 (635)
T PRK11147 391 R-AELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLL 451 (635)
T ss_pred c-cccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHH
Confidence 5 45788899999997643211 145688999999998777899999999999999975
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-72 Score=619.05 Aligned_cols=448 Identities=32% Similarity=0.492 Sum_probs=335.4
Q ss_pred CccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccc
Q 008771 95 SSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (554)
Q Consensus 95 ~~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~ 173 (554)
+++|+++||+++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++ ...||||+|++.++
T Consensus 4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-~~~i~~v~Q~~~~~ 82 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-GIKVGYLPQEPQLD 82 (556)
T ss_pred cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-CCEEEEEecCCCCC
Confidence 35799999999998 78899999999999999999999999999999999999999999999874 35799999999888
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcccc
Q 008771 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (554)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (554)
+..||.+|+...+.................. ..+ ..+...+.....+......++.++.+.++.++++.+|++ ..
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~ 157 (556)
T PRK11819 83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYA--EPD-ADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP--PW 157 (556)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhc--cCc-hhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC--cc
Confidence 8899999986543211000000000000000 000 001111222333344444555566778899999999995 36
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 254 ~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
++++.+|||||||||+||+||+.+|++||||||||+||+.++.+|.++|++.+.|||+||||++++..+||+|++|++|+
T Consensus 158 ~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~ 237 (556)
T PRK11819 158 DAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGR 237 (556)
T ss_pred cCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCE
Confidence 88999999999999999999999999999999999999999999999998887899999999999999999999999999
Q ss_pred eeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhhccccccccceee
Q 008771 334 SRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIR 413 (554)
Q Consensus 334 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 413 (554)
+..|.|+|++|...+......+...+++.++.+.++.+++++..... ........++++++... ..+..+....+.
T Consensus 238 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 313 (556)
T PRK11819 238 GIPWEGNYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPKAR-QAKSKARLARYEELLSE---EYQKRNETNEIF 313 (556)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhhcc---cccccCCCceee
Confidence 87799999999887765555555555555566655555544311100 00111111222222110 001011112222
Q ss_pred ccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEE
Q 008771 414 FPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF 493 (554)
Q Consensus 414 ~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~ 493 (554)
++.....++++|+++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++ ..+.++|+
T Consensus 314 ~~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~-~~~~i~~v 392 (556)
T PRK11819 314 IPPGPRLGDKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIG-ETVKLAYV 392 (556)
T ss_pred cCCCCCCCCeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-CceEEEEE
Confidence 33322234678999999999988889999999999999999999999999999999999999999999995 45678999
Q ss_pred ecccccCCCCCCCHHHHHHhhcc----cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++ ..++++.||.+++..... ......++.+|+.+++..+..++++..|||||||||+|
T Consensus 393 ~q~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~l 456 (556)
T PRK11819 393 DQSR-DALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHL 456 (556)
T ss_pred eCch-hhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHH
Confidence 9985 356778899999876431 11234567899999996556799999999999999875
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-72 Score=613.94 Aligned_cols=447 Identities=31% Similarity=0.536 Sum_probs=329.8
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCc
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~ 176 (554)
+|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+|+|+|+++|++|+|.+++. ..|+|++|++.+++..
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-~~i~~~~q~~~~~~~~ 79 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-ERLGKLRQDQFAFEEF 79 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-CEEEEEeccCCcCCCC
Confidence 489999999999889999999999999999999999999999999999999999999999864 4699999999888889
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCC
Q 008771 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (554)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (554)
||.+++..+.............+.........+. ....+.......+..+..+.++.++++.+|++....+++
T Consensus 80 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 152 (530)
T PRK15064 80 TVLDTVIMGHTELWEVKQERDRIYALPEMSEEDG-------MKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGL 152 (530)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHhcccccccchH-------HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCc
Confidence 9999986432110000000000000000000000 001111111122333445677889999999975444678
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCeeee
Q 008771 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336 (554)
Q Consensus 257 ~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~ 336 (554)
+.+|||||||||+||+||+.+|+||||||||++||+.++.+|.++|++.+.|||+||||++++.++||+|++|++|++..
T Consensus 153 ~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~ 232 (530)
T PRK15064 153 MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRV 232 (530)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEE
Confidence 89999999999999999999999999999999999999999999998889999999999999999999999999999877
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhhHHHHHHHHHHHHhhhhccccccccceeecc
Q 008771 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGA-NSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415 (554)
Q Consensus 337 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 415 (554)
|.|+|++|..+++........++.++++++..+++++.+..... ....+....++++++.... ..+.........++
T Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 310 (530)
T PRK15064 233 YPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDKIKLEE--VKPSSRQNPFIRFE 310 (530)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhhccccc--cCCccccCceeeCC
Confidence 99999999887765554555556666666666555544322111 1111111222222211000 00000000111222
Q ss_pred CCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEec
Q 008771 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ 495 (554)
Q Consensus 416 ~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q 495 (554)
.....+++.|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 311 ~~~~~~~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-~~i~~~~q 389 (530)
T PRK15064 311 QDKKLHRNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-ANIGYYAQ 389 (530)
T ss_pred CCCCCCCceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-eEEEEEcc
Confidence 22223567899999999998878999999999999999999999999999999999999999999999864 46899999
Q ss_pred ccccCCCCCCCHHHHHHhhc-ccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++...++...||.+++.... .......++.+|..+++..+..++++..|||||||||+|
T Consensus 390 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l 449 (530)
T PRK15064 390 DHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLF 449 (530)
T ss_pred cccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHH
Confidence 86434666789999986432 122345688999999996567899999999999999975
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-73 Score=586.72 Aligned_cols=445 Identities=40% Similarity=0.647 Sum_probs=387.8
Q ss_pred CCCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccc
Q 008771 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (554)
Q Consensus 93 ~~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~ 172 (554)
++...+.++|++++|.++.+++|+.|++.+|++|||+|+|||||||+|++|+|-..|..-++ .+..+.++...
T Consensus 71 ~~s~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~-------d~y~ls~e~~p 143 (614)
T KOG0927|consen 71 PISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI-------DFYLLSREIEP 143 (614)
T ss_pred cccccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCccc-------chhhhcccCCC
Confidence 45567999999999999999999999999999999999999999999999999999854332 34445555443
Q ss_pred ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccc
Q 008771 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (554)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 252 (554)
....+|...++....+..++....+.+....+. ...+.++.++.+...++.+..+.++..+|..+|+...+
T Consensus 144 s~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~---------~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m 214 (614)
T KOG0927|consen 144 SEKQAVQAVVMETDHERKRLEYLAEDLAQACDD---------KEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEM 214 (614)
T ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc---------hhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhH
Confidence 333345445545555555544444444433221 12344556667777888899999999999999999999
Q ss_pred cCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCC-eEEEEecCHHHHHhhcceEEEeeC
Q 008771 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV-PMVIISHDRAFLDQLCTKIVETEM 331 (554)
Q Consensus 253 ~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~-tvIiisHd~~~l~~~~d~i~~l~~ 331 (554)
.++.+.+||||||+|++|||+|..+|++|||||||||||++++.||.++|.++.. ++|++||+.+|+..+|++|+.+++
T Consensus 215 ~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~ 294 (614)
T KOG0927|consen 215 QDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDN 294 (614)
T ss_pred HHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecc
Confidence 9999999999999999999999999999999999999999999999999999887 899999999999999999999999
Q ss_pred CeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCchhhHHHHHHHHHHHHhhhhcccccccc
Q 008771 332 GVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAG--ANSGRASSAEKKLERLQEEEQIEKPFQRKQ 409 (554)
Q Consensus 332 g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 409 (554)
++...|.|||++|+..+.+....|..+|+++++++...++.+.+.+.+ ...+++++..+.+++++.....+++...+.
T Consensus 295 kkl~~y~Gnydqy~~tr~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~ 374 (614)
T KOG0927|consen 295 KKLIYYEGNYDQYVKTRSELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKV 374 (614)
T ss_pred cceeeecCCHHHHhhHHHHHhHHHHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCce
Confidence 999999999999999999999999999999999999999999998876 345677888888899988888889999999
Q ss_pred ceeeccCCCCCCCceEEEeeeeEecCCc-cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee
Q 008771 410 MKIRFPERGRSGRSVVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (554)
Q Consensus 410 ~~~~~~~~~~~~~~~l~~~~l~~~y~~~-~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~ 488 (554)
..++|+..+..+.+++.+.|++|.|++. .+|++++|-|..+++||+|||||||||||||+++|.+.|..|.|..+.+ .
T Consensus 375 l~~~f~~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-~ 453 (614)
T KOG0927|consen 375 LSFRFPEVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-N 453 (614)
T ss_pred EEEEcccccCCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-c
Confidence 9999998887789999999999999865 6999999999999999999999999999999999999999999988654 3
Q ss_pred eEEEEecccccCCCCCCCHHHHHHhhccc-CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 LPNYFEQNQAEALDLDKTVLETVAEAAED-WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+.++|.|+..+.++.+.|+.+++....++ +..++++.+|++|||+++....++++||+|||.||+|
T Consensus 454 ~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlF 520 (614)
T KOG0927|consen 454 KLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLF 520 (614)
T ss_pred cchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHH
Confidence 46699999999999999999999988875 7788999999999999999999999999999999974
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-71 Score=610.78 Aligned_cols=447 Identities=32% Similarity=0.501 Sum_probs=332.2
Q ss_pred ccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccccc
Q 008771 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (554)
Q Consensus 96 ~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (554)
.+|+++||+++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ ...|||++|++.+++
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-GIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-CCEEEEEeccCCCCC
Confidence 4699999999998 77899999999999999999999999999999999999999999999875 357999999998888
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccC
Q 008771 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (554)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (554)
..||.+|+..++................... .+.+ ..........+....+.++.+..+.++.++++.+|++ ..+
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~ 156 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAE--PDAD-MDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP--PWD 156 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhcc--Cchh-hHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC--ccc
Confidence 8999999865432110000000000000000 0000 0000111222333344556666778899999999995 258
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCee
Q 008771 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (554)
Q Consensus 255 ~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~ 334 (554)
+++.+|||||||||+|||||+.+|++||||||||+||+.++.+|.++|++.+.|||+||||++++..+||+|++|++|++
T Consensus 157 ~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i 236 (552)
T TIGR03719 157 ADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRG 236 (552)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEE
Confidence 88999999999999999999999999999999999999999999999988888999999999999999999999999998
Q ss_pred eeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhhccccccccceeec
Q 008771 335 RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRF 414 (554)
Q Consensus 335 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 414 (554)
..|.|+|++|...+....+.+...+++.++++.++..++.+..... ........++.+++... ..+......++.+
T Consensus 237 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 312 (552)
T TIGR03719 237 IPWEGNYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKAR-QAKSKARLARYEELLSQ---EFQKRNETAEIYI 312 (552)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHhhhhh---cccccCCCceeec
Confidence 7899999999987765555555556566666655554443211100 00111111222221110 0011111112223
Q ss_pred cCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEe
Q 008771 415 PERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFE 494 (554)
Q Consensus 415 ~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~ 494 (554)
+.....++++++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++ .++.++|++
T Consensus 313 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~-~~~~i~~v~ 391 (552)
T TIGR03719 313 PPGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIG-ETVKLAYVD 391 (552)
T ss_pred CCCCCCCCeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEEC-CceEEEEEe
Confidence 3222235678999999999988789999999999999999999999999999999999999999999995 456789999
Q ss_pred cccccCCCCCCCHHHHHHhhcc--c--CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 495 QNQAEALDLDKTVLETVAEAAE--D--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~~--~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|++ ..+++..||.+++..... . .....++.+|..+++.....++++..|||||||||+|
T Consensus 392 q~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~l 454 (552)
T TIGR03719 392 QSR-DALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHL 454 (552)
T ss_pred CCc-cccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHH
Confidence 985 246678899999976532 1 1133467899999996555789999999999999975
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-69 Score=601.46 Aligned_cols=444 Identities=29% Similarity=0.481 Sum_probs=328.3
Q ss_pred CCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCC---CCCceeEEEcCCCceEEEEeccc
Q 008771 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE---EPDSGNVIKAKSNMKIAFLSQEF 170 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~---~p~~G~I~~~~~~~~i~~v~Q~~ 170 (554)
...+|+++|++|+|+++++|+|+||+|.+|+++||||+||||||||||+|+|.. .|++ ..|+|++|+.
T Consensus 174 ~~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~---------g~I~~~~Q~~ 244 (718)
T PLN03073 174 AIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKN---------CQILHVEQEV 244 (718)
T ss_pred CceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCC---------CEEEEEeccC
Confidence 456799999999999888999999999999999999999999999999999974 2333 3577888875
Q ss_pred ccccCccHHHHHHHhhHHHHHHHHH-HHHHHHH--H--hh----------ccCcHHHHHHHHHHHHHHHHHHHhCCcccH
Q 008771 171 EVSMSRTVREEFMSAFKEEMEIAGK-LERVQKA--L--ES----------AVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (554)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~-~~~~~~~--~--~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (554)
.. ...|+.+.+............. ...+.+. + .. ...+. .........+...+...+.|..
T Consensus 245 ~g-~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~---~~~~~r~~~~~~~~~~~~~~~~ 320 (718)
T PLN03073 245 VG-DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDK---DAVSQRLEEIYKRLELIDAYTA 320 (718)
T ss_pred CC-CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccch---HHHHHHHHHHHHHHHhcCcchH
Confidence 42 4557766554322111111000 0000000 0 00 00000 0112233344455556677889
Q ss_pred HHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecC
Q 008771 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHD 315 (554)
Q Consensus 236 ~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd 315 (554)
+.++.++|..+||.....++++.+|||||||||+||+||+.+|++|||||||+|||+.++.||.++|++++.|||+||||
T Consensus 321 ~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd 400 (718)
T PLN03073 321 EARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHA 400 (718)
T ss_pred HHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECC
Confidence 99999999999997666789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhhHHHHHHHHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGA-NSGRASSAEKKLER 394 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 394 (554)
++++..+||+|++|++|++..|.|+|+.|...+......+..+|+.++++++++++++.++.... .+..+.+..+.+++
T Consensus 401 ~~~l~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~~~~~s~~k~l~~ 480 (718)
T PLN03073 401 REFLNTVVTDILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSRIKALDR 480 (718)
T ss_pred HHHHHHhCCEEEEEECCEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhcchHHHH
Confidence 99999999999999999998899999999998887777888888888888888887776643211 11112222233333
Q ss_pred HHHhhhhccccccccceeeccCCC-CCCCceEEEeeeeEecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhC
Q 008771 395 LQEEEQIEKPFQRKQMKIRFPERG-RSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 395 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G 472 (554)
+... ..+.......+.++... ..++++|+++|+++.|++ +.+|+++||+|.+||+++|+|||||||||||++|+|
T Consensus 481 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~G 557 (718)
T PLN03073 481 LGHV---DAVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISG 557 (718)
T ss_pred Hhhh---hccccCCCceeecCCCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3211 11111111223343321 235678999999999964 568999999999999999999999999999999999
Q ss_pred CCCCCceEEEECCceeeEEEEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcc
Q 008771 473 LEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIIL 552 (554)
Q Consensus 473 ~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl 552 (554)
+++|++|+|.+++ ...++|++|++...+....++...+...........++.+|+.|++..+..++++..|||||||||
T Consensus 558 ll~p~~G~I~~~~-~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRv 636 (718)
T PLN03073 558 ELQPSSGTVFRSA-KVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV 636 (718)
T ss_pred CCCCCCceEEECC-ceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHH
Confidence 9999999999875 457899999863333222222222221122334567899999999976677899999999999999
Q ss_pred cC
Q 008771 553 LY 554 (554)
Q Consensus 553 ~l 554 (554)
+|
T Consensus 637 aL 638 (718)
T PLN03073 637 AF 638 (718)
T ss_pred HH
Confidence 75
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-68 Score=561.48 Aligned_cols=378 Identities=23% Similarity=0.376 Sum_probs=297.4
Q ss_pred ccEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC----ceeEEEcCCC-------
Q 008771 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD----SGNVIKAKSN------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~----~G~I~~~~~~------- 160 (554)
++|+++||++.|.. ..+++||||+|.+||++||||+|||||||++++|.|++++. +|+|.++|.+
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 37999999999953 26999999999999999999999999999999999999987 8999999853
Q ss_pred -------ceEEEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCC
Q 008771 161 -------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (554)
Q Consensus 161 -------~~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (554)
..|+|+||++. +.+.+||.+.+...+. ......
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~--------------------------------------~h~~~~ 125 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALR--------------------------------------LHGKGS 125 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHH--------------------------------------Hhcccc
Confidence 26999999984 4455677766543221 001112
Q ss_pred cccHHHHHHHHhhhcCCCcccc-CCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCC
Q 008771 232 LDTLDAKVSKLMPELGFTADDG-DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQD 306 (554)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~~~~-~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g 306 (554)
.++...++.++|+.+||++... +++|++|||||||||.||+||+.+|++||+||||++||+.+...+.+.|+ +.|
T Consensus 126 ~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g 205 (539)
T COG1123 126 RAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELG 205 (539)
T ss_pred HHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcC
Confidence 4456788999999999986554 47999999999999999999999999999999999999999988888764 579
Q ss_pred CeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhH
Q 008771 307 VPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRAS 386 (554)
Q Consensus 307 ~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (554)
+++|+||||+..+.++||||++|++|+++. .|..++.+.... ..| ++.++..
T Consensus 206 ~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE-~G~~~~i~~~p~-------hpY---------T~~Ll~a----------- 257 (539)
T COG1123 206 MAVLFITHDLGVVAELADRVVVMYKGEIVE-TGPTEEILSNPQ-------HPY---------TRGLLAA----------- 257 (539)
T ss_pred cEEEEEcCCHHHHHHhcCeEEEEECCEEEE-ecCHHHHHhccC-------Ccc---------cHHHHhh-----------
Confidence 999999999999999999999999999854 455544433210 001 0000000
Q ss_pred HHHHHHHHHHHhhhhccccccccceeeccCCCCCCCceEEEeeeeEecCC-----------ccceeceEEEEecCCEEEE
Q 008771 387 SAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----------RLLFNRANLTIERGEKTAI 455 (554)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-----------~~~l~~vs~~i~~Ge~iaI 455 (554)
.. ........... ......++++++++|+++.|.. ..++++|||+|++||++||
T Consensus 258 --------~p------~~~~~~~~~~~-~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lgl 322 (539)
T COG1123 258 --------VP------RLGDEKIIRLP-RRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGL 322 (539)
T ss_pred --------CC------Ccccccccccc-cccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEE
Confidence 00 00000000000 0001126889999999999972 2479999999999999999
Q ss_pred ECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------eEEEEecccccCCCCCCCHHHHHHhhcc---c---
Q 008771 456 IGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------LPNYFEQNQAEALDLDKTVLETVAEAAE---D--- 517 (554)
Q Consensus 456 vG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~--- 517 (554)
||++|||||||.|+|+|+.+|++|+|.++|.++ .+.+++|+|...|+|..||.+++.+... .
T Consensus 323 VGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~ 402 (539)
T COG1123 323 VGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSG 402 (539)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccch
Confidence 999999999999999999999999999988652 3458899999999999999999987642 1
Q ss_pred -CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 518 -WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 518 -~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.....+.++|...+++++.++++|++||||||||++|
T Consensus 403 ~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaI 440 (539)
T COG1123 403 AERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAI 440 (539)
T ss_pred HHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHH
Confidence 1123578889999999888999999999999999975
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=581.73 Aligned_cols=397 Identities=18% Similarity=0.310 Sum_probs=295.7
Q ss_pred CccEEEEeEEEEeC----CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCC-----------
Q 008771 95 SSGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----------- 159 (554)
Q Consensus 95 ~~~i~~~~ls~~y~----~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~----------- 159 (554)
+++|+++|++++|+ +.++|+||||+|.+||++||||+||||||||+++|+|+++|++|+|.++|.
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 45799999999996 247999999999999999999999999999999999999999999988652
Q ss_pred -------------CceEEEEeccc--ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Q 008771 160 -------------NMKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224 (554)
Q Consensus 160 -------------~~~i~~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (554)
...||||+|++ .+++.+||.+|+...... .
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~---------------~-------------------- 134 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRL---------------H-------------------- 134 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHH---------------h--------------------
Confidence 12599999998 566778999998643110 0
Q ss_pred HHHHhCCcccHHHHHHHHhhhcCCCc--cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH
Q 008771 225 RKAQAVNLDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL 302 (554)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l 302 (554)
..+..++...++.++|+.+||+. ...++++.+|||||||||+||+||+.+|+||||||||++||+.++..+.+++
T Consensus 135 ---~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll 211 (623)
T PRK10261 135 ---QGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLI 211 (623)
T ss_pred ---cCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHH
Confidence 00112234567888999999963 3568999999999999999999999999999999999999999988888776
Q ss_pred c----cCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 008771 303 G----KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGA 378 (554)
Q Consensus 303 ~----~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (554)
+ +.|+|||+||||++++.++||||++|++|+++ ..|++.++...... .|. +.+......
T Consensus 212 ~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~-~~g~~~~~~~~~~~-------~~~---------~~l~~~~~~ 274 (623)
T PRK10261 212 KVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV-ETGSVEQIFHAPQH-------PYT---------RALLAAVPQ 274 (623)
T ss_pred HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec-ccCCHHHhhcCCCC-------hhh---------hhhhhccCc
Confidence 4 24899999999999999999999999999985 57887776432100 000 000000000
Q ss_pred -CCCchhhHHHHHHHHHHHHhhhhccccccccceeeccCCCCCCCceEEEeeeeEecCC-----------ccceeceEEE
Q 008771 379 -GANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----------RLLFNRANLT 446 (554)
Q Consensus 379 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-----------~~~l~~vs~~ 446 (554)
....++.. ....+... ...+..... ..++.....++++|+++|+++.|+. ..+|+++||+
T Consensus 275 ~~~~~~~~~--~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~ 346 (623)
T PRK10261 275 LGAMKGLDY--PRRFPLIS----LEHPAKQEP--PIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFD 346 (623)
T ss_pred ccccccccC--Cccccccc----cccccccCc--ccccccccCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeE
Confidence 00000000 00000000 000000000 0000111124678999999999961 3589999999
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------eEEEEecccccCCCCCCCHHHHHHh
Q 008771 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LPNYFEQNQAEALDLDKTVLETVAE 513 (554)
Q Consensus 447 i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------------~~~y~~Q~~~~~l~~~~tv~e~l~~ 513 (554)
|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|++|++...+++..||.+++..
T Consensus 347 i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~ 426 (623)
T PRK10261 347 LWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIME 426 (623)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999988643 3689999975568888999999876
Q ss_pred hcc--cC-----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 514 AAE--DW-----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 514 ~~~--~~-----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
... .. ....+.++|+.+++..+..++++..|||||||||+|
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~i 474 (623)
T PRK10261 427 PLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICI 474 (623)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHH
Confidence 421 11 124578899999997567899999999999999975
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=570.70 Aligned_cols=376 Identities=21% Similarity=0.353 Sum_probs=291.3
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~ 164 (554)
++|+++|++++|+++++|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+ ..|+
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 46999999999998899999999999999999999999999999999999999999999998742 2499
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|++|++.+++..||.+|+......... . .+ ...........++.++++
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~-----------~---------~~------------~~~~~~~~~~~~~~~~l~ 131 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKK-----------V---------CG------------VNIIDWREMRVRAAMMLL 131 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccc-----------c---------cc------------ccccCHHHHHHHHHHHHH
Confidence 999999888889999998532100000 0 00 000011123456788899
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~ 321 (554)
.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|+ +.|.|||+||||++++..
T Consensus 132 ~~gl~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~ 210 (510)
T PRK09700 132 RVGLK-VDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRR 210 (510)
T ss_pred HcCCC-CCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 99996 45789999999999999999999999999999999999999999999988774 358999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhh
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 401 (554)
+||+|++|++|++ .+.|+++++.... ..+.+.. .... ...
T Consensus 211 ~~d~v~~l~~G~i-~~~g~~~~~~~~~-----------------------~~~~~~~-~~~~---------------~~~ 250 (510)
T PRK09700 211 ICDRYTVMKDGSS-VCSGMVSDVSNDD-----------------------IVRLMVG-RELQ---------------NRF 250 (510)
T ss_pred hCCEEEEEECCEE-eeecchhhCCHHH-----------------------HHHHhcC-CCcc---------------ccc
Confidence 9999999999997 5778776653210 0000000 0000 000
Q ss_pred ccccccccceeeccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 008771 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (554)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i 481 (554)
.... . +.....++++|+++|+++.|. .+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|
T Consensus 251 ~~~~-~-------~~~~~~~~~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I 320 (510)
T PRK09700 251 NAMK-E-------NVSNLAHETVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEI 320 (510)
T ss_pred cccc-c-------ccccCCCCcEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeE
Confidence 0000 0 000112356899999998774 38999999999999999999999999999999999999999999
Q ss_pred EECCcee-----------eEEEEecccc-cCCCCCCCHHHHHHhhcc----------c-C----CHHHHHHHHhhCCCCh
Q 008771 482 LLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEAAE----------D-W----RIDDIKGLLGRCNFKA 534 (554)
Q Consensus 482 ~~~~~~~-----------~~~y~~Q~~~-~~l~~~~tv~e~l~~~~~----------~-~----~~~~~~~~L~~~~l~~ 534 (554)
.++|.++ .++|++|++. ..+++..||.+++..... . . ....+.++|+.+++..
T Consensus 321 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 400 (510)
T PRK09700 321 RLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC 400 (510)
T ss_pred EECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC
Confidence 9988543 2689999742 357788999999864311 0 0 1134678999999964
Q ss_pred hhhccccCcCChhhhhcccC
Q 008771 535 DMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 535 ~~~~~~~~~LSGGek~Rl~l 554 (554)
+..++++..|||||||||+|
T Consensus 401 ~~~~~~~~~LSgGq~qrv~l 420 (510)
T PRK09700 401 HSVNQNITELSGGNQQKVLI 420 (510)
T ss_pred CCccCccccCChHHHHHHHH
Confidence 56899999999999999975
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-66 Score=568.64 Aligned_cols=370 Identities=21% Similarity=0.302 Sum_probs=288.8
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC--CceeEEEcCCC-----------ce
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSN-----------MK 162 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p--~~G~I~~~~~~-----------~~ 162 (554)
++|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.++|.+ ..
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 469999999999988999999999999999999999999999999999999996 89999998742 24
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
|+|++|++.+++..||.+|+....... .. ..........++.++
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~---------------~~---------------------~~~~~~~~~~~~~~~ 127 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEIT---------------PG---------------------GIMDYDAMYLRAQKL 127 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhccccc---------------cc---------------------CCcCHHHHHHHHHHH
Confidence 999999998888899999985321000 00 000111234567788
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l 319 (554)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|++ .|.|||+||||++++
T Consensus 128 l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~ 206 (506)
T PRK13549 128 LAQLKLD-INPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEV 206 (506)
T ss_pred HHHcCCC-CCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence 9999996 467899999999999999999999999999999999999999999999887743 588999999999999
Q ss_pred HhhcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhh
Q 008771 320 DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEE 399 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 399 (554)
..+||+|++|++|++. +.|+..++.... ....+.. ..
T Consensus 207 ~~~~d~v~~l~~G~i~-~~~~~~~~~~~~-----------------------~~~~~~~-~~------------------ 243 (506)
T PRK13549 207 KAISDTICVIRDGRHI-GTRPAAGMTEDD-----------------------IITMMVG-RE------------------ 243 (506)
T ss_pred HHhcCEEEEEECCEEe-eecccccCCHHH-----------------------HHHHhhC-cC------------------
Confidence 9999999999999874 555544321100 0000000 00
Q ss_pred hhccccccccceeeccCCCCCCCceEEEeeeeEecC---CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC-
Q 008771 400 QIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE---DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK- 475 (554)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~---~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~- 475 (554)
.....+. +. ...++++|+++|+++.|+ +..+++++||+|++||+++|+|+||||||||+++|+|+++
T Consensus 244 -~~~~~~~-------~~-~~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~ 314 (506)
T PRK13549 244 -LTALYPR-------EP-HTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG 314 (506)
T ss_pred -ccccccc-------cc-cCCCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC
Confidence 0000000 00 112456899999999994 3568999999999999999999999999999999999999
Q ss_pred CCceEEEECCcee-----------eEEEEecccc-cCCCCCCCHHHHHHhhcc----c---C----CHHHHHHHHhhCCC
Q 008771 476 PRGGEVLLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEAAE----D---W----RIDDIKGLLGRCNF 532 (554)
Q Consensus 476 p~~G~i~~~~~~~-----------~~~y~~Q~~~-~~l~~~~tv~e~l~~~~~----~---~----~~~~~~~~L~~~~l 532 (554)
|++|+|.++|.++ .++|++|++. ..+++..||.+++..... . . ....+..+|+++++
T Consensus 315 ~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 394 (506)
T PRK13549 315 RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKV 394 (506)
T ss_pred CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCc
Confidence 5999999987543 2689999863 246678899999864310 0 0 12357889999999
Q ss_pred ChhhhccccCcCChhhhhcccC
Q 008771 533 KADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 533 ~~~~~~~~~~~LSGGek~Rl~l 554 (554)
..+..++++..|||||||||+|
T Consensus 395 ~~~~~~~~~~~LSgG~kqrv~l 416 (506)
T PRK13549 395 KTASPELAIARLSGGNQQKAVL 416 (506)
T ss_pred cCCCcccccccCCHHHHHHHHH
Confidence 6456799999999999999975
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-66 Score=564.48 Aligned_cols=369 Identities=26% Similarity=0.361 Sum_probs=289.0
Q ss_pred CCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ce
Q 008771 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MK 162 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~ 162 (554)
+.++|+++|++++|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 8 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 8 APPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred CCceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 3457999999999998889999999999999999999999999999999999999999999998742 24
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
|+|++|++.+++..||.+|+..... .....++++.++
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~-------------------------------------------~~~~~~~~~~~~ 124 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLP-------------------------------------------KRQASMQKMKQL 124 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccc-------------------------------------------cchHHHHHHHHH
Confidence 9999999988888999999753210 001123456778
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l 319 (554)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||||++++
T Consensus 125 l~~~~l~-~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~ 203 (510)
T PRK15439 125 LAALGCQ-LDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEI 203 (510)
T ss_pred HHHcCCC-ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 8999996 456899999999999999999999999999999999999999999999988753 589999999999999
Q ss_pred HhhcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhh
Q 008771 320 DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEE 399 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 399 (554)
..+||+|++|++|++. +.|+++++...... +.+.......+ +...
T Consensus 204 ~~~~d~i~~l~~G~i~-~~g~~~~~~~~~~~-----------------------~~~~~~~~~~~-------~~~~---- 248 (510)
T PRK15439 204 RQLADRISVMRDGTIA-LSGKTADLSTDDII-----------------------QAITPAAREKS-------LSAS---- 248 (510)
T ss_pred HHhCCEEEEEECCEEE-EecChHHcCHHHHH-----------------------HHHhCcccccc-------cccc----
Confidence 9999999999999984 67888776432100 00000000000 0000
Q ss_pred hhccccccccceeeccC---CCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008771 400 QIEKPFQRKQMKIRFPE---RGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (554)
Q Consensus 400 ~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p 476 (554)
.. ..+.++. ....++++|+++|+++ .+|+++||+|++||++||+||||||||||+++|+|+++|
T Consensus 249 --~~------~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p 315 (510)
T PRK15439 249 --QK------LWLELPGNRRQQAAGAPVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA 315 (510)
T ss_pred --cc------ccccccccccccCCCCceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 00 0000110 1113466899999984 258999999999999999999999999999999999999
Q ss_pred CceEEEECCcee-----------eEEEEecccc-cCCCCCCCHHHHHHhh----cc---cC--CHHHHHHHHhhCCCChh
Q 008771 477 RGGEVLLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEA----AE---DW--RIDDIKGLLGRCNFKAD 535 (554)
Q Consensus 477 ~~G~i~~~~~~~-----------~~~y~~Q~~~-~~l~~~~tv~e~l~~~----~~---~~--~~~~~~~~L~~~~l~~~ 535 (554)
++|+|.++|.++ .++|++|++. ..+++..|+.+++... .. .. ....+..+|+.+++..+
T Consensus 316 ~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 395 (510)
T PRK15439 316 RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFN 395 (510)
T ss_pred CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCC
Confidence 999999988643 3689999752 3467788999997532 00 01 12347789999999645
Q ss_pred hhccccCcCChhhhhcccC
Q 008771 536 MLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 536 ~~~~~~~~LSGGek~Rl~l 554 (554)
..++++..|||||||||+|
T Consensus 396 ~~~~~~~~LSgG~kqrl~l 414 (510)
T PRK15439 396 HAEQAARTLSGGNQQKVLI 414 (510)
T ss_pred CccCccccCCcHHHHHHHH
Confidence 6899999999999999975
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=565.13 Aligned_cols=370 Identities=20% Similarity=0.335 Sum_probs=286.1
Q ss_pred ccEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC------
Q 008771 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN------ 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~------ 160 (554)
++|+++|++++|++ +++|+|+||+|.+||++||+|+||||||||+|+|+|+++| ++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 46999999999963 5799999999999999999999999999999999999986 79999998742
Q ss_pred --------ceEEEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhC
Q 008771 161 --------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230 (554)
Q Consensus 161 --------~~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (554)
..|||++|++. +++..|+.+++...... . ...
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~---------------~-----------------------~~~ 125 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSL---------------H-----------------------RGM 125 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHH---------------h-----------------------cCC
Confidence 25999999975 44556888776421100 0 001
Q ss_pred CcccHHHHHHHHhhhcCCCcc--ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----
Q 008771 231 NLDTLDAKVSKLMPELGFTAD--DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---- 304 (554)
Q Consensus 231 ~~~~~~~~~~~~l~~lgl~~~--~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---- 304 (554)
..+....++.++++.+|+... ..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++
T Consensus 126 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~ 205 (529)
T PRK15134 126 RREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE 205 (529)
T ss_pred CHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh
Confidence 122345678889999999642 35889999999999999999999999999999999999999999999988754
Q ss_pred CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchh
Q 008771 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR 384 (554)
Q Consensus 305 ~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (554)
.|.|||+||||++++..+||+|++|++|++. +.|...++..... ..+ .+....
T Consensus 206 ~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~~~~-------~~~---------~~~~~~---------- 258 (529)
T PRK15134 206 LNMGLLFITHNLSIVRKLADRVAVMQNGRCV-EQNRAATLFSAPT-------HPY---------TQKLLN---------- 258 (529)
T ss_pred cCCeEEEEcCcHHHHHHhcCEEEEEECCEEE-EeCCHHHHhhCCC-------CHH---------HHHHHH----------
Confidence 4899999999999999999999999999975 4465544322100 000 000000
Q ss_pred hHHHHHHHHHHHHhhhhccccccccceeeccCCCCCCCceEEEeeeeEecC-----------CccceeceEEEEecCCEE
Q 008771 385 ASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE-----------DRLLFNRANLTIERGEKT 453 (554)
Q Consensus 385 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~-----------~~~~l~~vs~~i~~Ge~i 453 (554)
... ...+. +. ...++++|+++|+++.|+ ++.+|+++||+|++||++
T Consensus 259 ------------~~~-~~~~~---------~~-~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~ 315 (529)
T PRK15134 259 ------------SEP-SGDPV---------PL-PEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETL 315 (529)
T ss_pred ------------hCc-ccccc---------cc-CCCCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEE
Confidence 000 00000 00 112456899999999995 356899999999999999
Q ss_pred EEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------eEEEEecccccCCCCCCCHHHHHHhhcc----
Q 008771 454 AIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LPNYFEQNQAEALDLDKTVLETVAEAAE---- 516 (554)
Q Consensus 454 aIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---- 516 (554)
+|+||||||||||+++|+|+++ ++|+|+++|.++ .++|++|++...+++..||.+++.....
T Consensus 316 ~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~ 394 (529)
T PRK15134 316 GLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP 394 (529)
T ss_pred EEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc
Confidence 9999999999999999999984 899999988543 2689999864357778899999976421
Q ss_pred --cC--CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 517 --DW--RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 517 --~~--~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.. ....+..+|..+++..+..++++..|||||||||+|
T Consensus 395 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~l 436 (529)
T PRK15134 395 TLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAI 436 (529)
T ss_pred cCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHH
Confidence 11 124578899999996556799999999999999975
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-65 Score=561.07 Aligned_cols=357 Identities=26% Similarity=0.415 Sum_probs=283.9
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCC--CCCceeEEEc------------------
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKA------------------ 157 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p~~G~I~~~------------------ 157 (554)
|+++|++++|+++++|+|+||+|.+|++++|+|+||||||||+|+|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 57899999998888999999999999999999999999999999999997 7999999885
Q ss_pred -----CC--------------------CceEEEEecc-cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHH
Q 008771 158 -----KS--------------------NMKIAFLSQE-FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211 (554)
Q Consensus 158 -----~~--------------------~~~i~~v~Q~-~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (554)
|. ...++|++|+ +.+++..|+.+|+...+..
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~----------------------- 137 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEE----------------------- 137 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHH-----------------------
Confidence 11 1248999997 5666778999988532100
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCC
Q 008771 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291 (554)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD 291 (554)
.....++..+++.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 138 ----------------~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD 200 (520)
T TIGR03269 138 ----------------IGYEGKEAVGRAVDLIEMVQLS-HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLD 200 (520)
T ss_pred ----------------cCCCHHHHHHHHHHHHHHcCCh-hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCC
Confidence 0011123345788899999996 45688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008771 292 LDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367 (554)
Q Consensus 292 ~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (554)
+.++.++.++|+ +.|.|||+||||++++.++||+|++|++|++. +.|++.++...... ..
T Consensus 201 ~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~~~~~--------------~~- 264 (520)
T TIGR03269 201 PQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIK-EEGTPDEVVAVFME--------------GV- 264 (520)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEe-eecCHHHHHHHHHh--------------hc-
Confidence 999999877664 35899999999999999999999999999874 57888765431000 00
Q ss_pred HHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhhccccccccceeeccCCCCCCCceEEEeeeeEecCC-----ccceec
Q 008771 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----RLLFNR 442 (554)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-----~~~l~~ 442 (554)
. .. .++ .....++++|+++|+++.|++ +.+|++
T Consensus 265 ------~-------------------~~------~~~-----------~~~~~~~~~l~~~~l~~~~~~~~~~~~~il~~ 302 (520)
T TIGR03269 265 ------S-------------------EV------EKE-----------CEVEVGEPIIKVRNVSKRYISVDRGVVKAVDN 302 (520)
T ss_pred ------h-------------------hh------ccc-----------cccCCCCceEEEeccEEEeccCCCCCceEEee
Confidence 0 00 000 000123568999999999952 468999
Q ss_pred eEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEC-Cce----------------eeEEEEecccccCCCCCC
Q 008771 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG-EHN----------------VLPNYFEQNQAEALDLDK 505 (554)
Q Consensus 443 vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~-~~~----------------~~~~y~~Q~~~~~l~~~~ 505 (554)
+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++ |.. ..++|++|++ .+++..
T Consensus 303 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~--~l~~~~ 380 (520)
T TIGR03269 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEY--DLYPHR 380 (520)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCc--ccCCCC
Confidence 999999999999999999999999999999999999999994 311 1268999985 366789
Q ss_pred CHHHHHHhhcc-cC----CHHHHHHHHhhCCCCh----hhhccccCcCChhhhhcccC
Q 008771 506 TVLETVAEAAE-DW----RIDDIKGLLGRCNFKA----DMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 506 tv~e~l~~~~~-~~----~~~~~~~~L~~~~l~~----~~~~~~~~~LSGGek~Rl~l 554 (554)
||.+++..... .. ....+..+|+.+++.. +..++++..|||||||||+|
T Consensus 381 tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~l 438 (520)
T TIGR03269 381 TVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVAL 438 (520)
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHH
Confidence 99999975321 11 1235778999999964 25789999999999999975
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=560.82 Aligned_cols=371 Identities=23% Similarity=0.315 Sum_probs=285.8
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC--CceeEEEcCCC-----------ceE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSN-----------MKI 163 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p--~~G~I~~~~~~-----------~~i 163 (554)
+|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+ ..|
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 37899999999988899999999999999999999999999999999999987 79999998742 259
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+|+||++.+++..||.+|+....... ... ..........++.+++
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~--------------~~~---------------------~~~~~~~~~~~~~~~l 125 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEIT--------------LPG---------------------GRMAYNAMYLRAKNLL 125 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhcccc--------------ccc---------------------cccCHHHHHHHHHHHH
Confidence 99999998888899999975321000 000 0001112345677889
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~ 320 (554)
+.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|+ +.|.|||+||||++++.
T Consensus 126 ~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~ 205 (500)
T TIGR02633 126 RELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVK 205 (500)
T ss_pred HHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHH
Confidence 999996443467899999999999999999999999999999999999999999988864 45889999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhh
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQ 400 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 400 (554)
.+||+|++|++|++. +.|...++... ..+..+.. ..
T Consensus 206 ~~~d~i~~l~~G~i~-~~~~~~~~~~~-----------------------~~~~~~~~-~~------------------- 241 (500)
T TIGR02633 206 AVCDTICVIRDGQHV-ATKDMSTMSED-----------------------DIITMMVG-RE------------------- 241 (500)
T ss_pred HhCCEEEEEeCCeEe-eecCcccCCHH-----------------------HHHHHHhC-cc-------------------
Confidence 999999999999874 33433221100 00000000 00
Q ss_pred hccccccccceeeccCCCCCCCceEEEeeeeEec---CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCC-
Q 008771 401 IEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP- 476 (554)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y---~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p- 476 (554)
.....+. .....++.+|+++|+++.| ++..+++++||+|++||+++|+||||||||||+++|+|+++|
T Consensus 242 ~~~~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~ 313 (500)
T TIGR02633 242 ITSLYPH--------EPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK 313 (500)
T ss_pred ccccccc--------cccCCCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCC
Confidence 0000000 0001235689999999999 345699999999999999999999999999999999999996
Q ss_pred CceEEEECCcee-----------eEEEEecccc-cCCCCCCCHHHHHHhhc----c---cCC----HHHHHHHHhhCCCC
Q 008771 477 RGGEVLLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEAA----E---DWR----IDDIKGLLGRCNFK 533 (554)
Q Consensus 477 ~~G~i~~~~~~~-----------~~~y~~Q~~~-~~l~~~~tv~e~l~~~~----~---~~~----~~~~~~~L~~~~l~ 533 (554)
++|+|.++|.++ .++|++|++. ..++++.||.+++.... . ... ...+..+|+++++.
T Consensus 314 ~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 393 (500)
T TIGR02633 314 FEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVK 393 (500)
T ss_pred CCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCcc
Confidence 899999987543 2589999853 24678889999986531 0 011 23578899999996
Q ss_pred hhhhccccCcCChhhhhcccC
Q 008771 534 ADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 534 ~~~~~~~~~~LSGGek~Rl~l 554 (554)
.+..++++..|||||||||+|
T Consensus 394 ~~~~~~~~~~LSgGqkqrv~l 414 (500)
T TIGR02633 394 TASPFLPIGRLSGGNQQKAVL 414 (500)
T ss_pred CCCccCccccCCHHHHHHHHH
Confidence 445789999999999999975
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-66 Score=561.76 Aligned_cols=366 Identities=23% Similarity=0.362 Sum_probs=284.8
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~ 164 (554)
++|+++|++++|+++++|+|+||+|.+||++||+||||||||||+|+|+|+++|++|+|.++|.+ ..|+
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 46999999999998899999999999999999999999999999999999999999999998742 2499
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|++|++.+++..||.+|+..+.... .. ....+......++.++++
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~---------------~~--------------------~~~~~~~~~~~~~~~~l~ 127 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFV---------------NR--------------------FGRIDWKKMYAEADKLLA 127 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccc---------------cc--------------------cCccCHHHHHHHHHHHHH
Confidence 9999998888899999985421000 00 000011123456778899
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~ 321 (554)
.+|+. +..++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|+ +.|.|||+||||++++..
T Consensus 128 ~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~ 206 (501)
T PRK10762 128 RLNLR-FSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFE 206 (501)
T ss_pred HcCCC-CCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99996 45688999999999999999999999999999999999999999999987764 358899999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhh
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 401 (554)
+||+|++|++|++. ..|...+.... +....... . + .
T Consensus 207 ~~d~i~~l~~G~i~-~~~~~~~~~~~-----------------------~~~~~~~~-~---~----------------~ 242 (501)
T PRK10762 207 ICDDVTVFRDGQFI-AEREVADLTED-----------------------SLIEMMVG-R---K----------------L 242 (501)
T ss_pred hCCEEEEEeCCEEE-EecCcCcCCHH-----------------------HHHHHhcC-C---C----------------c
Confidence 99999999999874 44444332110 00000000 0 0 0
Q ss_pred ccccccccceeeccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 008771 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (554)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i 481 (554)
..+.+ . .+ ...++++++++|+++ .+++++||+|.+||+++|+||||||||||+++|+|+.+|++|+|
T Consensus 243 ~~~~~----~--~~--~~~~~~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I 309 (501)
T PRK10762 243 EDQYP----R--LD--KAPGEVRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYV 309 (501)
T ss_pred ccccc----c--cc--cCCCCcEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEE
Confidence 00000 0 00 012356899999985 36999999999999999999999999999999999999999999
Q ss_pred EECCcee-----------eEEEEecccc-cCCCCCCCHHHHHHhhcc----c----C----CHHHHHHHHhhCCCChhhh
Q 008771 482 LLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEAAE----D----W----RIDDIKGLLGRCNFKADML 537 (554)
Q Consensus 482 ~~~~~~~-----------~~~y~~Q~~~-~~l~~~~tv~e~l~~~~~----~----~----~~~~~~~~L~~~~l~~~~~ 537 (554)
.++|.++ .++|++|++. ..+++..||.+++..... . . ....++.+|..+++..+..
T Consensus 310 ~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 389 (501)
T PRK10762 310 TLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSM 389 (501)
T ss_pred EECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCc
Confidence 9988543 2689999863 246678899999864210 0 1 1235788999999954457
Q ss_pred ccccCcCChhhhhcccC
Q 008771 538 DRKVSLLSGGEKIILLY 554 (554)
Q Consensus 538 ~~~~~~LSGGek~Rl~l 554 (554)
++++..|||||||||+|
T Consensus 390 ~~~~~~LSgGekqrv~l 406 (501)
T PRK10762 390 EQAIGLLSGGNQQKVAI 406 (501)
T ss_pred cCchhhCCHHHHHHHHH
Confidence 99999999999999875
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-65 Score=558.52 Aligned_cols=367 Identities=22% Similarity=0.352 Sum_probs=284.2
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~ 164 (554)
++|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 46999999999998889999999999999999999999999999999999999999999998743 2599
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|++|++.+++..||.+|+........ . .....+....++.++++
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~-------------~-----------------------~~~~~~~~~~~~~~~l~ 126 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHK-------------G-----------------------GIVNRRLLNYEAREQLE 126 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccc-------------c-----------------------CCCCHHHHHHHHHHHHH
Confidence 99999988888999999864210000 0 00011223456788899
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~ 321 (554)
.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|+ +.|.|||+||||++++..
T Consensus 127 ~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~ 205 (501)
T PRK11288 127 HLGVD-IDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFA 205 (501)
T ss_pred HcCCC-CCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 99996 45688999999999999999999999999999999999999999999998875 358999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhh
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 401 (554)
+||+|++|++|++.. . ++.+..... + +....+.... .
T Consensus 206 ~~d~i~~l~~G~i~~-~--~~~~~~~~~----------~----------~~~~~~~~~~--------------------~ 242 (501)
T PRK11288 206 LCDAITVFKDGRYVA-T--FDDMAQVDR----------D----------QLVQAMVGRE--------------------I 242 (501)
T ss_pred hCCEEEEEECCEEEe-e--cCccccCCH----------H----------HHHHHhcCCC--------------------c
Confidence 999999999998752 2 211100000 0 0000000000 0
Q ss_pred ccccccccceeeccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 008771 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (554)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i 481 (554)
... ....+ ...++++++++|+++. .+++++||+|++||+++|+||||||||||+++|+|+++|++|+|
T Consensus 243 ~~~-------~~~~~-~~~~~~~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i 310 (501)
T PRK11288 243 GDI-------YGYRP-RPLGEVRLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQV 310 (501)
T ss_pred ccc-------ccccc-cCCCCcEEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceE
Confidence 000 00000 1124567999999843 48999999999999999999999999999999999999999999
Q ss_pred EECCcee-----------eEEEEecccc-cCCCCCCCHHHHHHhhcc------c------CCHHHHHHHHhhCCCChhhh
Q 008771 482 LLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEAAE------D------WRIDDIKGLLGRCNFKADML 537 (554)
Q Consensus 482 ~~~~~~~-----------~~~y~~Q~~~-~~l~~~~tv~e~l~~~~~------~------~~~~~~~~~L~~~~l~~~~~ 537 (554)
+++|+++ .++|++|++. ..+++..|+.+++..... . .....++.+|+.+++..+..
T Consensus 311 ~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 390 (501)
T PRK11288 311 YLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSR 390 (501)
T ss_pred EECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCc
Confidence 9987643 2579999853 346678999999864311 0 01235788999999965568
Q ss_pred ccccCcCChhhhhcccC
Q 008771 538 DRKVSLLSGGEKIILLY 554 (554)
Q Consensus 538 ~~~~~~LSGGek~Rl~l 554 (554)
++++..|||||||||+|
T Consensus 391 ~~~~~~LSgGq~qrl~l 407 (501)
T PRK11288 391 EQLIMNLSGGNQQKAIL 407 (501)
T ss_pred cCccccCCHHHHHHHHH
Confidence 99999999999999975
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=551.88 Aligned_cols=367 Identities=21% Similarity=0.250 Sum_probs=275.9
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v 166 (554)
+|+++|++++|+++.+|+|+||+|++|++++|+|+||||||||+|+|+|+++|++|+|.++|... .++|+
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence 58999999999888899999999999999999999999999999999999999999999876421 38999
Q ss_pred eccccccc--------CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 167 SQEFEVSM--------SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 167 ~Q~~~~~~--------~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
+|++.... ..|+.+++.. .....++
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~ 115 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQD-----------------------------------------------EVKDPAR 115 (490)
T ss_pred ccCcchhhcccchhhccccHHHhccc-----------------------------------------------chhHHHH
Confidence 99864311 2344433210 0112345
Q ss_pred HHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecC
Q 008771 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHD 315 (554)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd 315 (554)
+.++++.+|+. +..++++.+|||||||||+||+||+.+|++|||||||++||+.+++++.++|++ .|.|||+||||
T Consensus 116 ~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~ 194 (490)
T PRK10938 116 CEQLAQQFGIT-ALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNR 194 (490)
T ss_pred HHHHHHHcCCH-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 77788999996 457899999999999999999999999999999999999999999999988754 47899999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERL 395 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 395 (554)
++++.++||+|++|++|++. +.|+++++..... + .++... +.+
T Consensus 195 ~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~~~~----------------~-------~~~~~~-------------~~~ 237 (490)
T PRK10938 195 FDEIPDFVQFAGVLADCTLA-ETGEREEILQQAL----------------V-------AQLAHS-------------EQL 237 (490)
T ss_pred HHHHHhhCCEEEEEECCEEE-EeCCHHHHhcchh----------------h-------hhhhhh-------------hcc
Confidence 99999999999999999974 5576655432100 0 000000 000
Q ss_pred HHhhhhccccccccceeeccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 396 QEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
.. ...+..... ..+.....++++|+++|+++.|+++.+++++||+|.+||+++|+||||||||||+++|+|+.+
T Consensus 238 ~~---~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~ 311 (490)
T PRK10938 238 EG---VQLPEPDEP---SARHALPANEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP 311 (490)
T ss_pred Cc---cccCccccc---ccccccCCCCceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 00 000000000 000001124678999999999987779999999999999999999999999999999999877
Q ss_pred C-CceEEEECCcee-----------eEEEEecccccCCCCCCCHHHHHHhhcc-------cCC---HHHHHHHHhhCCCC
Q 008771 476 P-RGGEVLLGEHNV-----------LPNYFEQNQAEALDLDKTVLETVAEAAE-------DWR---IDDIKGLLGRCNFK 533 (554)
Q Consensus 476 p-~~G~i~~~~~~~-----------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~-------~~~---~~~~~~~L~~~~l~ 533 (554)
| ++|+|.++|.++ .++|++|++........++.+++..... ... ...+..+|+.+++.
T Consensus 312 ~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 391 (490)
T PRK10938 312 QGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGID 391 (490)
T ss_pred cccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCc
Confidence 5 699999987532 2689999753212223567666543210 011 23578899999997
Q ss_pred hhhhccccCcCChhhhhcccC
Q 008771 534 ADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 534 ~~~~~~~~~~LSGGek~Rl~l 554 (554)
.+..++++..|||||||||+|
T Consensus 392 ~~~~~~~~~~LSgGq~qrv~l 412 (490)
T PRK10938 392 KRTADAPFHSLSWGQQRLALI 412 (490)
T ss_pred hhhccCchhhCCHHHHHHHHH
Confidence 546789999999999999975
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-64 Score=546.06 Aligned_cols=364 Identities=20% Similarity=0.311 Sum_probs=278.7
Q ss_pred EEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEEEEec
Q 008771 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFLSQ 168 (554)
Q Consensus 100 ~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~~v~Q 168 (554)
++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 80 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQ 80 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEec
Confidence 4689999998899999999999999999999999999999999999999999999998743 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++..||.+|+....... ... ........+++.++++.+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~--------------~~~----------------------~~~~~~~~~~~~~~l~~~~l 124 (491)
T PRK10982 81 ELNLVLQRSVMDNMWLGRYPT--------------KGM----------------------FVDQDKMYRDTKAIFDELDI 124 (491)
T ss_pred ccccccCCCHHHHhhcccccc--------------ccc----------------------ccCHHHHHHHHHHHHHHcCC
Confidence 998888899999985321000 000 00011223467788899998
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcce
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~ 325 (554)
. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||||++++..+||+
T Consensus 125 ~-~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~ 203 (491)
T PRK10982 125 D-IDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDE 203 (491)
T ss_pred C-CCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence 6 456888999999999999999999999999999999999999999999888743 589999999999999999999
Q ss_pred EEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhhcccc
Q 008771 326 IVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPF 405 (554)
Q Consensus 326 i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 405 (554)
|++|++|++. ..|+..+.... +....+.. .. ....+
T Consensus 204 i~~l~~G~i~-~~~~~~~~~~~-----------------------~~~~~~~~-~~-------------------~~~~~ 239 (491)
T PRK10982 204 ITILRDGQWI-ATQPLAGLTMD-----------------------KIIAMMVG-RS-------------------LTQRF 239 (491)
T ss_pred EEEEECCEEE-eecChhhCCHH-----------------------HHHHHHhC-CC-------------------ccccc
Confidence 9999999874 44443221100 00000000 00 00000
Q ss_pred ccccceeeccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008771 406 QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (554)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~ 485 (554)
+. +. ...++++|+++|+++.| +.+|+++||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 240 ~~-------~~-~~~~~~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 309 (491)
T PRK10982 240 PD-------KE-NKPGEVILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHG 309 (491)
T ss_pred cc-------cc-CCCCCcEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECC
Confidence 00 00 11235689999999875 3589999999999999999999999999999999999999999999988
Q ss_pred ceee-----------EEEEecccc-cCCCCCCCHHHH-----HHhhcc--c-CC----HHHHHHHHhhCCCChhhhcccc
Q 008771 486 HNVL-----------PNYFEQNQA-EALDLDKTVLET-----VAEAAE--D-WR----IDDIKGLLGRCNFKADMLDRKV 541 (554)
Q Consensus 486 ~~~~-----------~~y~~Q~~~-~~l~~~~tv~e~-----l~~~~~--~-~~----~~~~~~~L~~~~l~~~~~~~~~ 541 (554)
.++. .+|++|++. ..++++.|+.++ +..... . .. ...++.+++.+++..+..++++
T Consensus 310 ~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 389 (491)
T PRK10982 310 KKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI 389 (491)
T ss_pred EECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc
Confidence 6542 578998753 235566777655 322111 1 01 2357889999999645679999
Q ss_pred CcCChhhhhcccC
Q 008771 542 SLLSGGEKIILLY 554 (554)
Q Consensus 542 ~~LSGGek~Rl~l 554 (554)
.+|||||||||+|
T Consensus 390 ~~LSgGq~qrv~l 402 (491)
T PRK10982 390 GSLSGGNQQKVII 402 (491)
T ss_pred ccCCcHHHHHHHH
Confidence 9999999999975
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-64 Score=514.83 Aligned_cols=412 Identities=30% Similarity=0.493 Sum_probs=330.7
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccccc
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (554)
...|.+.+++..||++.+|++-++++..|.++||||+||+|||||||+|+. |.|... -++|+..-.+
T Consensus 78 ~~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f-------~veqE~~g~~ 144 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGF-------HVEQEVRGDD 144 (582)
T ss_pred ccceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCcc-------Cchhheeccc
Confidence 356899999999999999999999999999999999999999999999997 444322 2233321100
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcc-cHHHHHHHHhhhcCCCcccc
Q 008771 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD-TLDAKVSKLMPELGFTADDG 253 (554)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~lgl~~~~~ 253 (554)
..-....+ +......+++.+ + . .+... ..++.+.++|..+||.++..
T Consensus 145 t~~~~~~l---------------------~~D~~~~dfl~~---e-~-------~l~~~~~l~ei~~~~L~glGFt~emq 192 (582)
T KOG0062|consen 145 TEALQSVL---------------------ESDTERLDFLAE---E-K-------ELLAGLTLEEIYDKILAGLGFTPEMQ 192 (582)
T ss_pred hHHHhhhh---------------------hccHHHHHHHHh---h-h-------hhhccchHHHHHHHHHHhCCCCHHHH
Confidence 00000000 000000000000 0 0 00001 23333445899999999999
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 254 ~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
.+++.+||||||+|++|||||..+||+|||||||||||..++.||.++|+.++.|+|+||||+.|++.+|+.||++++-+
T Consensus 193 ~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~k 272 (582)
T KOG0062|consen 193 LQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLK 272 (582)
T ss_pred hccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhhccccccccceee
Q 008771 334 SRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIR 413 (554)
Q Consensus 334 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 413 (554)
+..|.|||++|+.++.+....++..|+.+++....++..+.++. .++.++.+.+.+++.+...+....+.......+.
T Consensus 273 L~~YkGN~~~Fvk~k~E~~~n~qrefe~q~~~R~h~q~fid~Fr--Yna~ra~svqSRIk~L~kl~~lk~~~~~~~~~~~ 350 (582)
T KOG0062|consen 273 LDYYKGNYSQFVKTKPEAKKNQQREFEVQMKYRAHLQVFIDKFR--YNAARASSVQSRIKMLGKLPALKSTLIEVLIGFL 350 (582)
T ss_pred hhhhcCcHHHHHHhhHHhhhhhhhhcchHHHHHHHHHHHHHHhc--cCcccchhHHHHHHHhccCCCCCccceeccccee
Confidence 99999999999999999998899999988888888888888764 2333444555555555544433444444556677
Q ss_pred ccCC-CCCCCceEEEeeeeEecCCc--cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeE
Q 008771 414 FPER-GRSGRSVVTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP 490 (554)
Q Consensus 414 ~~~~-~~~~~~~l~~~~l~~~y~~~--~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~ 490 (554)
||+. ...+.+++++.+++|.|+.. ..+.++++++..-++++++|+||+||||++|++.|.+.|.+|.+.+. .++++
T Consensus 351 fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~-~r~ri 429 (582)
T KOG0062|consen 351 FPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRH-PRLRI 429 (582)
T ss_pred cCCCCCcCCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeec-cccee
Confidence 8874 34577899999999999653 48899999999999999999999999999999999999999998886 56789
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++.+.++...+..+.+....+....++++..|+.||++++.+.+++..||||||.||+|
T Consensus 430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvaf 493 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAF 493 (582)
T ss_pred cchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHH
Confidence 9999998888877778888888877778899999999999999999999999999999999975
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-61 Score=480.98 Aligned_cols=371 Identities=20% Similarity=0.329 Sum_probs=295.9
Q ss_pred CccEEEEeEEEEeC----CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCCc----
Q 008771 95 SSGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSNM---- 161 (554)
Q Consensus 95 ~~~i~~~~ls~~y~----~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~~---- 161 (554)
.+.|.++|+++.|. ...++++|||+|.+||.+||||+||||||-..+.|+|+++. -+|+|.++|.+.
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 45699999999995 46799999999999999999999999999999999999864 478999998642
Q ss_pred ----------eEEEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHh
Q 008771 162 ----------KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229 (554)
Q Consensus 162 ----------~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (554)
+|+++||+|. +.|-.|+...+...+ .....
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l--------------------------------------~~Hrg 125 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVL--------------------------------------RLHRG 125 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHH--------------------------------------HHHhc
Confidence 6999999984 344446655443221 11223
Q ss_pred CCcccHHHHHHHHhhhcCCCc--cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----
Q 008771 230 VNLDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---- 303 (554)
Q Consensus 230 ~~~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---- 303 (554)
+.....++++.++|+.+|++. ..++.+|++|||||||||+||.||+.+|++||.||||++||+.....+.++|+
T Consensus 126 ~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~ 205 (534)
T COG4172 126 LSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQA 205 (534)
T ss_pred ccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHH
Confidence 455667889999999999974 35688999999999999999999999999999999999999998888888764
Q ss_pred cCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCch
Q 008771 304 KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSG 383 (554)
Q Consensus 304 ~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (554)
+.|+++++||||+..+.++||||++|..|.++. .|...+.... ....| ++.+++
T Consensus 206 ~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE-~~~t~~lF~~-------PqHpY---------Tr~Ll~--------- 259 (534)
T COG4172 206 ELGMAILFITHDLGIVRKFADRVYVMQHGEIVE-TGTTETLFAA-------PQHPY---------TRKLLA--------- 259 (534)
T ss_pred HhCcEEEEEeccHHHHHHhhhhEEEEeccEEee-cCcHHHHhhC-------CCChH---------HHHHHh---------
Confidence 479999999999999999999999999999753 3332222211 01111 000000
Q ss_pred hhHHHHHHHHHHHHhhhhccccccccceeeccCCCCCCCceEEEeeeeEecCC-----------ccceeceEEEEecCCE
Q 008771 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----------RLLFNRANLTIERGEK 452 (554)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-----------~~~l~~vs~~i~~Ge~ 452 (554)
..|...+ ++....+.++++++++.+.|+- ..+++++||++++||.
T Consensus 260 ------------------aeP~g~~------~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqT 315 (534)
T COG4172 260 ------------------AEPSGDP------PPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQT 315 (534)
T ss_pred ------------------cCCCCCC------CCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCe
Confidence 0110000 1112345789999999998852 2368899999999999
Q ss_pred EEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-------------EEEEecccccCCCCCCCHHHHHHhhcc---
Q 008771 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------PNYFEQNQAEALDLDKTVLETVAEAAE--- 516 (554)
Q Consensus 453 iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~-------------~~y~~Q~~~~~l~~~~tv~e~l~~~~~--- 516 (554)
+||||.+|||||||-.+|.+++++. |+|++.|.++. ...++|+|...|+|.+||.+.|.++..
T Consensus 316 lGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~ 394 (534)
T COG4172 316 LGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHE 394 (534)
T ss_pred EEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcC
Confidence 9999999999999999999999887 99999998772 347899999999999999999988742
Q ss_pred -----cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 517 -----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 517 -----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
....+.+.+.|...|+++...+|.|+..|||||||++|
T Consensus 395 ~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAI 437 (534)
T COG4172 395 PKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAI 437 (534)
T ss_pred CCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHH
Confidence 12345688999999999999999999999999999875
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-60 Score=520.55 Aligned_cols=355 Identities=25% Similarity=0.330 Sum_probs=264.7
Q ss_pred eEEEEeCCe-eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEE-----------EcCCC---------
Q 008771 102 NISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-----------KAKSN--------- 160 (554)
Q Consensus 102 ~ls~~y~~~-~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~-----------~~~~~--------- 160 (554)
+++++|+.+ .+|++++ ++++|+++||+|+||||||||+|+|+|+++|++|+|. ++|.+
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 489999864 6999999 9999999999999999999999999999999999997 65532
Q ss_pred ---ceEEEEeccccccc---CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCccc
Q 008771 161 ---MKIAFLSQEFEVSM---SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~---~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (554)
.++++.+|.....+ ..||.+++.. ..
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~------------------------------------------------~~ 188 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFKGKVRELLKK------------------------------------------------VD 188 (590)
T ss_pred ccCcceeecccchhhhhhhhcchHHHHHHh------------------------------------------------hh
Confidence 23566666544332 2266555421 01
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccC--CCeEEEE
Q 008771 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVII 312 (554)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--g~tvIii 312 (554)
...++.++++.+||. ...++++.+|||||+|||+||+||+.+|++|||||||++||+.++.++.+++++. |.|||+|
T Consensus 189 ~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIiv 267 (590)
T PRK13409 189 ERGKLDEVVERLGLE-NILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVV 267 (590)
T ss_pred HHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
Confidence 123567788889986 4578999999999999999999999999999999999999999999999887643 8999999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKL 392 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (554)
|||++++..+||+|++|+++. |.|..+....... .. ..++...+.. .
T Consensus 268 sHd~~~l~~~~D~v~vl~~~~-----g~~g~~~~~~~~~--~~-------------i~~~~~~~~~-----~-------- 314 (590)
T PRK13409 268 EHDLAVLDYLADNVHIAYGEP-----GAYGVVSKPKGVR--VG-------------INEYLKGYLP-----E-------- 314 (590)
T ss_pred eCCHHHHHHhCCEEEEEeCCc-----cccceecchhHHH--Hh-------------HHHHHHhcch-----h--------
Confidence 999999999999999997641 2221111111100 00 0000000000 0
Q ss_pred HHHHHhhhhccccccccceeeccCC--CCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHH
Q 008771 393 ERLQEEEQIEKPFQRKQMKIRFPER--GRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470 (554)
Q Consensus 393 ~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L 470 (554)
+.+. .. + ....+.++.. ...+.++++++|+++.|++. .|+++||+|++||+++|+||||||||||+++|
T Consensus 315 e~~~----~~-~---~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L 385 (590)
T PRK13409 315 ENMR----IR-P---EPIEFEERPPRDESERETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLL 385 (590)
T ss_pred hhhh----cc-c---cCcceecCCCccccCCceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHH
Confidence 0000 00 0 0001111111 11356789999999999874 58999999999999999999999999999999
Q ss_pred hCCCCCCceEEEECCceeeEEEEecccccCCCCCCCHHHHHHhhcccC-CHHHHHHHHhhCCCChhhhccccCcCChhhh
Q 008771 471 MGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW-RIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549 (554)
Q Consensus 471 ~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek 549 (554)
+|+++|++|+|.++ +.++|++|++. ++++.||.+++....... ....+..+|+.+++. +..++++.+||||||
T Consensus 386 ~Gl~~p~~G~I~~~---~~i~y~~Q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~-~~~~~~~~~LSGGe~ 459 (590)
T PRK13409 386 AGVLKPDEGEVDPE---LKISYKPQYIK--PDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE-RLLDKNVKDLSGGEL 459 (590)
T ss_pred hCCCCCCceEEEEe---eeEEEeccccc--CCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH-HHHhCCcccCCHHHH
Confidence 99999999999885 56899999853 567889999987642222 233568899999996 678999999999999
Q ss_pred hcccC
Q 008771 550 IILLY 554 (554)
Q Consensus 550 ~Rl~l 554 (554)
|||+|
T Consensus 460 QRvai 464 (590)
T PRK13409 460 QRVAI 464 (590)
T ss_pred HHHHH
Confidence 99975
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-59 Score=471.01 Aligned_cols=433 Identities=31% Similarity=0.554 Sum_probs=339.5
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCC---CCCCceeEEEcCCCceEEEEeccccc
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ---EEPDSGNVIKAKSNMKIAFLSQEFEV 172 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~---~~p~~G~I~~~~~~~~i~~v~Q~~~~ 172 (554)
..|.++|++.+-.++.+|.|.||.|-.|.++|||||||-||||||+.|+.- ++| ++.+-|+.|+...
T Consensus 263 ~DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp----------nIDvLlCEQEvva 332 (807)
T KOG0066|consen 263 MDIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP----------NIDVLLCEQEVVA 332 (807)
T ss_pred ccceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC----------CCceEeeeeeeee
Confidence 459999999999999999999999999999999999999999999999864 233 3557788888654
Q ss_pred ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccc
Q 008771 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (554)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 252 (554)
...+..+.++.+-.....+......+...++... .....++.+.+++ ...++.+..+.+++.+|..+||+..+
T Consensus 333 -d~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd--~taaErl~~v~~E----LraiGA~sAEarARRILAGLGFskEM 405 (807)
T KOG0066|consen 333 -DSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGD--TTAAERLKEVADE----LRAIGADSAEARARRILAGLGFSKEM 405 (807)
T ss_pred -cCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCc--hHHHHHHHHHHHH----HHHhccccchhHHHHHHhhcCCChhH
Confidence 3345555554443333333333333333333211 1111222222322 34567778899999999999999999
Q ss_pred cCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCC
Q 008771 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332 (554)
Q Consensus 253 ~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g 332 (554)
.+|+...+|||||+||+|||||...|-+|+|||||||||....-||-++|+.+.+|++|||||-.|++.+|+.||+|++.
T Consensus 406 Q~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~q 485 (807)
T KOG0066|consen 406 QERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQ 485 (807)
T ss_pred hcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHH-HHHHHHHh-------------
Q 008771 333 VSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEK-KLERLQEE------------- 398 (554)
Q Consensus 333 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~------------- 398 (554)
++..|.|||.-|...+..........|+++++.++.++. .+..+..+....+ .+.+-+..
T Consensus 486 kLhyYrGNY~~FKKmY~Qk~~e~~K~yekQeK~LkelKa------~GkS~KqAEkq~Ke~ltrKq~K~~~Knq~dded~g 559 (807)
T KOG0066|consen 486 KLHYYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKELKA------EGKSAKQAEKQVKEQLTRKQKKGGKKNQNDDEDAG 559 (807)
T ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCcchHHHHHHHHHHHHHHHHhccccccCcccccc
Confidence 999999999999888877777777778777766654331 1222222211111 11111100
Q ss_pred --hhhccccccccceeeccCCCCCCCceEEEeeeeEecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 399 --EQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 399 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
....+| ....++|.||....-..|++-+.+|+|.|++ .++|..++|-|.--.+|+||||||.||||||++|.|-+.
T Consensus 560 apELL~Rp-KEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~ 638 (807)
T KOG0066|consen 560 APELLQRP-KEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD 638 (807)
T ss_pred CHHHHhCc-hheEEEEecCCCCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC
Confidence 001111 1234678888877777899999999999964 689999999999999999999999999999999999999
Q ss_pred CCceEEEECCceeeEEEEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 476 PRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 476 p~~G~i~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|..|+.+-+ +.+++|+|+|+..+.|..+.|..+.+...+ .....++|..|+.||+......-.+..||||||.||+|
T Consensus 639 P~~GE~RKn-hrL~iG~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRVal 715 (807)
T KOG0066|consen 639 PNDGELRKN-HRLRIGWFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVAL 715 (807)
T ss_pred CCcchhhcc-ceeeeechhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHH
Confidence 999999875 788999999998889999999999998776 35678899999999996544446789999999999975
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-59 Score=488.49 Aligned_cols=369 Identities=26% Similarity=0.396 Sum_probs=295.5
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceE
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i 163 (554)
.+.++++|++|+|++.++|++|||+|.+||++||+|+||||||||+|+|+|.++|++|+|.++|.. ..|
T Consensus 6 ~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 6 PPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred cceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 356899999999999999999999999999999999999999999999999999999999999853 369
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+.|+|+..+.+++||.||+..+.... .....++...+.+++.++|
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~-----------------------------------~~~g~id~~~m~~~A~~~l 130 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPT-----------------------------------RRFGLIDRKAMRRRARELL 130 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccc-----------------------------------cCCCccCHHHHHHHHHHHH
Confidence 99999999999999999986431100 0011234566788899999
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLD 320 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd~~~l~ 320 (554)
+.+|+..+ .+.++.+||+||||.|+|||||..+++||||||||++|+....+.|.+.+ ++.|.+||+|||+++++.
T Consensus 131 ~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~ 209 (500)
T COG1129 131 ARLGLDID-PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVF 209 (500)
T ss_pred HHcCCCCC-hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHH
Confidence 99999733 78999999999999999999999999999999999999999988888765 568999999999999999
Q ss_pred hhcceEEEeeCCeeeeccCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhh
Q 008771 321 QLCTKIVETEMGVSRTYEGNY-SQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEE 399 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 399 (554)
++||||.+|++|+.+- ..+. .++- ..+.++.|.. +. +
T Consensus 210 ~i~DritVlRDG~~v~-~~~~~~~~~-----------------------~~~lv~~MvG-----r~---------~---- 247 (500)
T COG1129 210 EIADRITVLRDGRVVG-TRPTAAETS-----------------------EDELVRLMVG-----RE---------L---- 247 (500)
T ss_pred HhcCEEEEEeCCEEee-ecccccCCC-----------------------HHHHHHHhhC-----cc---------h----
Confidence 9999999999998642 1110 1100 1111222211 10 0
Q ss_pred hhccccccccceeeccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008771 400 QIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (554)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G 479 (554)
...++. +.....+++++++++++.. ..++++||++++||++||.|--|+|+|.|+++|+|..++.+|
T Consensus 248 --~~~~~~-------~~~~~~~~~~l~v~~l~~~----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G 314 (500)
T COG1129 248 --EDLFPE-------PPEEGIGEPVLEVRNLSGG----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSG 314 (500)
T ss_pred --hhhccc-------ccccCCCCcEEEEecCCCC----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCc
Confidence 000000 0011346789999999863 258999999999999999999999999999999999999999
Q ss_pred EEEECCceee-----------EEEEecc-cccCCCCCCCHHHHHHhhcc-c----------CCHHHHHHHHhhCCCChhh
Q 008771 480 EVLLGEHNVL-----------PNYFEQN-QAEALDLDKTVLETVAEAAE-D----------WRIDDIKGLLGRCNFKADM 536 (554)
Q Consensus 480 ~i~~~~~~~~-----------~~y~~Q~-~~~~l~~~~tv~e~l~~~~~-~----------~~~~~~~~~L~~~~l~~~~ 536 (554)
+|.++|.++. ++|++-+ ..+.+.++.+|.+|+..+.. . .....++.+..++.++...
T Consensus 315 ~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s 394 (500)
T COG1129 315 EILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394 (500)
T ss_pred eEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCC
Confidence 9999998663 4688654 34678899999999865411 1 1123578889999999888
Q ss_pred hccccCcCChhhhhcccC
Q 008771 537 LDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 537 ~~~~~~~LSGGek~Rl~l 554 (554)
.+.++.+||||+||||.|
T Consensus 395 ~~~~v~~LSGGNQQKVvl 412 (500)
T COG1129 395 PEQPIGTLSGGNQQKVVL 412 (500)
T ss_pred ccchhhcCCchhhhhHHH
Confidence 899999999999999874
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-58 Score=519.58 Aligned_cols=256 Identities=26% Similarity=0.397 Sum_probs=197.3
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCCe---eeEEceeEEEECCC
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV---TVLKDVTWEVKKGE 124 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~~---~~l~~isl~i~~Ge 124 (554)
.+..+++.+....+|+.+..+|++..+..+...... ..........+.|+++||+|+|+.+ ++|+|+||.|++|+
T Consensus 303 sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~--~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~ 380 (1228)
T KOG0055|consen 303 SLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYS--KGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQ 380 (1228)
T ss_pred hhhccccchHHHhccccchHHHHHHhcCCCCCCccc--ccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCC
Confidence 567777888889999999999999876655433321 1111122456779999999999865 59999999999999
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHH----HH
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKE----EM 190 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~----~~ 190 (554)
.+||||+|||||||++++|.++|.|++|+|.++|.+. +||.|+|+|.+ +..||+||+..+-.+ +.
T Consensus 381 ~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvl-F~~tI~eNI~~G~~dat~~~i 459 (1228)
T KOG0055|consen 381 TVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVL-FATTIRENIRYGKPDATREEI 459 (1228)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhh-hcccHHHHHhcCCCcccHHHH
Confidence 9999999999999999999999999999999999764 59999999955 788999999765321 11
Q ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHH
Q 008771 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270 (554)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~L 270 (554)
....++ ......+..+.+.++ ..-.++.+ +|||||||||||
T Consensus 460 ~~a~k~------------------------------------ana~~fi~~lp~g~~--T~vge~g~-qLSGGQKQRIAI 500 (1228)
T KOG0055|consen 460 EEAAKA------------------------------------ANAHDFILKLPDGYD--TLVGERGV-QLSGGQKQRIAI 500 (1228)
T ss_pred HHHHHH------------------------------------ccHHHHHHhhHHhhc--ccccCCCC-CCChHHHHHHHH
Confidence 111110 111122233333222 12223333 699999999999
Q ss_pred HHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 271 GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 271 AraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
||||+.+|+|||||||||+||+++.+.+.+.|.+ .|.|.|+|+|+++.+.+ ||+|++|++|+++ ..|+.++.+..
T Consensus 501 ARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~Iv-E~G~h~ELi~~ 577 (1228)
T KOG0055|consen 501 ARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIV-EQGTHDELIAL 577 (1228)
T ss_pred HHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEE-EecCHHHHHhc
Confidence 9999999999999999999999999999999864 58999999999999987 9999999999984 44555554443
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-58 Score=474.26 Aligned_cols=371 Identities=25% Similarity=0.371 Sum_probs=298.2
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~ 164 (554)
..+++++++|.|++..+++||||+|++||++||+|+||||||||+++|.|+++|++|+|+++|+. ..||
T Consensus 3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 45899999999999999999999999999999999999999999999999999999999999864 3699
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
||+|++.+.+++||.||+..+.... ....++.....+++.++.+
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~------------------------------------~~~~~~~~~~~~~i~~l~~ 126 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPS------------------------------------KGGLIDRRQARARIKELSE 126 (501)
T ss_pred EEeeccccccccchhhhhhhcCccc------------------------------------cccccCHHHHHHHHHHHHH
Confidence 9999999999999999997543110 0012234556788999999
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~ 321 (554)
.+||+ -+.++++.+||-||||||.|.+||+.+|++|||||||+.|-|...+.|.+.|+ +.|+|||+|||.+.++.+
T Consensus 127 ~yGl~-vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~ 205 (501)
T COG3845 127 RYGLP-VDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMA 205 (501)
T ss_pred HhCCC-CCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHH
Confidence 99997 45689999999999999999999999999999999999999999999988764 579999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhh
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 401 (554)
+||||.+|+.|+.+ |.++..... ..+++.+.|.+.. .
T Consensus 206 iaDrvTVLR~Gkvv---gt~~~~~~~--------------------t~~ela~lMvG~~--------------------v 242 (501)
T COG3845 206 IADRVTVLRRGKVV---GTVDPVAET--------------------TEEELAELMVGRE--------------------V 242 (501)
T ss_pred hhCeeEEEeCCeEE---eeecCCCCC--------------------CHHHHHHHhcCCc--------------------c
Confidence 99999999999863 222210000 0011111111100 0
Q ss_pred ccccccccceeeccCCCCCCCceEEEeeeeEecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceE
Q 008771 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (554)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~ 480 (554)
..+ ... ....+++++++++++++.-.. ...++++||+|+.||++||.|-.|.|.+.|+.+|+|+.+|.+|+
T Consensus 243 ~~~-------~~~-~~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~ 314 (501)
T COG3845 243 VLR-------VVK-PPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGR 314 (501)
T ss_pred ccc-------ccc-CCCCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCce
Confidence 000 000 123467999999999986432 35789999999999999999999999999999999999999999
Q ss_pred EEECCcee------------eEEEEeccc-ccCCCCCCCHHHHHHhhccc-------------CCHHHHHHHHhhCCCCh
Q 008771 481 VLLGEHNV------------LPNYFEQNQ-AEALDLDKTVLETVAEAAED-------------WRIDDIKGLLGRCNFKA 534 (554)
Q Consensus 481 i~~~~~~~------------~~~y~~Q~~-~~~l~~~~tv~e~l~~~~~~-------------~~~~~~~~~L~~~~l~~ 534 (554)
|.++|+++ -.+|++.+. ...+-++.|+.||+...... .-...++.++++|++..
T Consensus 315 I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~ 394 (501)
T COG3845 315 ILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA 394 (501)
T ss_pred EEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccC
Confidence 99999886 136887654 56788999999997643221 11245788899999987
Q ss_pred hhhccccCcCChhhhhcccC
Q 008771 535 DMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 535 ~~~~~~~~~LSGGek~Rl~l 554 (554)
.....++.+||||++||+.+
T Consensus 395 ~~~~~~a~~LSGGNqQK~Il 414 (501)
T COG3845 395 PSPDAPARSLSGGNQQKLIL 414 (501)
T ss_pred CCCCcchhhcCCcceehhhh
Confidence 77888999999999999854
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-55 Score=409.03 Aligned_cols=210 Identities=29% Similarity=0.488 Sum_probs=186.9
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAF 165 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~~ 165 (554)
+|+++||+|+||+..+|++|||+|.+||+++||||||||||||||+|+|+.+|++|+|.++|.. .++|+
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 5899999999999999999999999999999999999999999999999999999999999842 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
|||++++|+.+||.||+..+.. ....++.++.++++.++|+.
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~--------------------------------------~v~~~~k~eA~~~A~~lL~~ 123 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPV--------------------------------------KVKKLSKAEAREKALELLEK 123 (240)
T ss_pred ecccccccccchHHHHHHhhhH--------------------------------------HHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999975421 11234556778889999999
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHHhh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd~~~l~~~ 322 (554)
+||. +..+.+|.+|||||||||||||||+.+|+++|+|||||+|||+....+.+.+ .+.|.|+|+|||++.|+.++
T Consensus 124 VGL~-~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 124 VGLA-DKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred cCch-hhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHh
Confidence 9997 5679999999999999999999999999999999999999999988887765 46799999999999999999
Q ss_pred cceEEEeeCCeeeeccCChhHHHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||||++|++|+++. .|+.+++..
T Consensus 203 adrviFmd~G~iie-~g~p~~~f~ 225 (240)
T COG1126 203 ADRVIFMDQGKIIE-EGPPEEFFD 225 (240)
T ss_pred hheEEEeeCCEEEE-ecCHHHHhc
Confidence 99999999998754 446666554
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=492.04 Aligned_cols=269 Identities=16% Similarity=0.251 Sum_probs=180.2
Q ss_pred hhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC---eeeEEceeEEEECCCEE
Q 008771 50 SAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGEKV 126 (554)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge~~ 126 (554)
......+..++.+..+.+++++..+.+++........ . ......|+++||+|+|++ .++|+|+||+|++||++
T Consensus 339 ~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~--~--~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~v 414 (1466)
T PTZ00265 339 TIILPNITEYMKSLEATNSLYEIINRKPLVENNDDGK--K--LKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTY 414 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCc--c--CCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEE
Confidence 3445556778889999999988765543221100000 0 011135999999999975 36999999999999999
Q ss_pred EEECCCCccHHHHHHHHHCCCCCCceeEEEc-CCCc----------eEEEEecccccccCccHHHHHHHhhHHHHH----
Q 008771 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA-KSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEME---- 191 (554)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~-~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~---- 191 (554)
||+|+||||||||+++|+|+++|++|+|.++ |.+. .||||+|++.++. .||+||+..+......
T Consensus 415 aIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~ 493 (1466)
T PTZ00265 415 AFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEAL 493 (1466)
T ss_pred EEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchh
Confidence 9999999999999999999999999999994 4432 4999999998865 6999999753210000
Q ss_pred --HHH-------H----HHHHHHH---HhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcc----
Q 008771 192 --IAG-------K----LERVQKA---LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD---- 251 (554)
Q Consensus 192 --~~~-------~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~---- 251 (554)
... . ....... ......+.......++. ..-.....++.+.++++.+++...
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~v~~a~~~~~l~~~i~~l 565 (1466)
T PTZ00265 494 SNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEM--------RKNYQTIKDSEVVDVSKKVLIHDFVSAL 565 (1466)
T ss_pred ccccccccccccccccccccccccccchhhhcccccchhhhhhc--------ccccccCCHHHHHHHHHHhCcHHHHHhC
Confidence 000 0 0000000 00000000000000000 000001112334444444443211
Q ss_pred ------ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 008771 252 ------DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 252 ------~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~ 321 (554)
........|||||||||+|||||+.+|+||||||||++||+.+...+.+.|++ .|.|+|+|||+++.+ +
T Consensus 566 p~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i-~ 644 (1466)
T PTZ00265 566 PDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTI-R 644 (1466)
T ss_pred ccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH-H
Confidence 12455789999999999999999999999999999999999999999888754 379999999999998 4
Q ss_pred hcceEEEeeCC
Q 008771 322 LCTKIVETEMG 332 (554)
Q Consensus 322 ~~d~i~~l~~g 332 (554)
.||+|++|++|
T Consensus 645 ~aD~Iivl~~g 655 (1466)
T PTZ00265 645 YANTIFVLSNR 655 (1466)
T ss_pred hCCEEEEEeCC
Confidence 79999999885
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=487.76 Aligned_cols=251 Identities=20% Similarity=0.281 Sum_probs=177.0
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC---eeeEEceeEEEECCC
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGE 124 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge 124 (554)
.+...+..+..+..+..+++|+.+....+..... .+.. . ......|+++|++|+|++ +++|+|+||+|++|+
T Consensus 570 pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~-~~~~-~---~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge 644 (1622)
T PLN03130 570 PLFMLPNLITQAVNANVSLKRLEELLLAEERVLL-PNPP-L---EPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGS 644 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-cCCc-c---cCCCCceEEEeeEEEccCCCCCceeeceeEEecCCC
Confidence 3444455566788888888888665543221100 0000 0 011235999999999964 579999999999999
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCCc-eeEEEcCCCceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPDS-GNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL 203 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~-G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~ 203 (554)
.++|+|++|||||||+++|+|+++|++ |+|.+.+ .|+||+|++.+ ++.||+||+..+-... .++..+.+
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~---~Iayv~Q~p~L-fngTIreNI~fg~~~d------~e~y~~vl 714 (1622)
T PLN03130 645 LVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG---TVAYVPQVSWI-FNATVRDNILFGSPFD------PERYERAI 714 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC---eEEEEcCcccc-CCCCHHHHHhCCCccc------HHHHHHHH
Confidence 999999999999999999999999999 9998754 69999999988 4579999997542100 00000011
Q ss_pred hhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEee
Q 008771 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLL 283 (554)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlL 283 (554)
+. + .+...+..+-+ |......+ .-.+|||||||||+||||++.+|+||||
T Consensus 715 ~a---------------------~------~L~~di~~LP~--Gd~T~IGe-~G~~LSGGQKQRIaLARAly~~~~IlLL 764 (1622)
T PLN03130 715 DV---------------------T------ALQHDLDLLPG--GDLTEIGE-RGVNISGGQKQRVSMARAVYSNSDVYIF 764 (1622)
T ss_pred HH---------------------h------CcHHHHHhCCC--cccccccC-CCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 00 0 01111111111 22221212 2357999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHH-HHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 284 DEPTNHLDLDTIEWLE-GYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 284 DEPt~~LD~~~~~~l~-~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|||||+||+++.+.+. +.+.. .++|+|+|||++..+. .||+|++|++|++. ..|+|++..
T Consensus 765 DEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~-e~Gt~~eL~ 827 (1622)
T PLN03130 765 DDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS-QVDRIILVHEGMIK-EEGTYEELS 827 (1622)
T ss_pred CCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHH-hCCEEEEEeCCEEE-EeCCHHHHH
Confidence 9999999999877664 34443 4799999999999986 49999999999874 456665543
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-50 Score=486.40 Aligned_cols=251 Identities=18% Similarity=0.263 Sum_probs=175.7
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC---eeeEEceeEEEECCC
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGE 124 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge 124 (554)
.+......+..+..+..+++|+.+....+..... . ... .......|+++|++|+|++ +++|+|+||+|++|+
T Consensus 570 pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~-~-~~~---~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge 644 (1495)
T PLN03232 570 PLNMLPNLLSQVVNANVSLQRIEELLLSEERILA-Q-NPP---LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGS 644 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-c-cCC---cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCC
Confidence 3455555556788888888888776543321110 0 000 0011235999999999964 579999999999999
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~ 204 (554)
+++|+|++|||||||+++|+|+++|++|.+.. ....|+||+|++.++ +.||+||+..+-... .++..+.++
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~--~~~~Iayv~Q~p~Lf-~gTIreNI~fg~~~~------~e~~~~vl~ 715 (1495)
T PLN03232 645 LVAIVGGTGEGKTSLISAMLGELSHAETSSVV--IRGSVAYVPQVSWIF-NATVRENILFGSDFE------SERYWRAID 715 (1495)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcccCCCEEE--ecCcEEEEcCccccc-cccHHHHhhcCCccC------HHHHHHHHH
Confidence 99999999999999999999999999987643 234699999999884 679999997542100 000000000
Q ss_pred hccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeec
Q 008771 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284 (554)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLD 284 (554)
. + .+...+..+ . -|..... ...-.+|||||||||+||||++.+|+|||||
T Consensus 716 ~---------------------~------~L~~di~~L-p-~Gd~T~I-Ge~G~~LSGGQkQRIaLARAly~~~~IlLLD 765 (1495)
T PLN03232 716 V---------------------T------ALQHDLDLL-P-GRDLTEI-GERGVNISGGQKQRVSMARAVYSNSDIYIFD 765 (1495)
T ss_pred H---------------------h------CCHHHHHhC-C-CCCCcee-cCCCcccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 0 0 001111111 0 0222211 1223579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHH-Hcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 285 EPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 285 EPt~~LD~~~~~~l~~~-l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||||+||+++.+.+.+. +.. .++|+|+|||+++.+. .||+|++|++|++. ..|+|++.
T Consensus 766 EptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~-~~Gt~~eL 826 (1495)
T PLN03232 766 DPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP-LMDRIILVSEGMIK-EEGTFAEL 826 (1495)
T ss_pred CCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHH-hCCEEEEEeCCEEE-EecCHHHH
Confidence 99999999988776543 443 5799999999999986 59999999999874 45665554
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=485.85 Aligned_cols=251 Identities=18% Similarity=0.258 Sum_probs=179.9
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~ 125 (554)
.+......+..++.+..+++|+.+....+........... . .......|+++|++|+|++ .++|+|+||+|++|++
T Consensus 589 pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~-~-~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~ 666 (1522)
T TIGR00957 589 PLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRT-I-KPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGAL 666 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccc-c-CCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCE
Confidence 4555555566788888888888665543321111000000 0 0011136999999999974 5799999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (554)
++|+|+||||||||+++|+|+++|++|+|.++| .|+||+|++.+ ++.||+||+..+..... ...+++ +
T Consensus 667 v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---~i~yv~Q~~~l-~~~Ti~eNI~~g~~~~~---~~~~~~---~-- 734 (1522)
T TIGR00957 667 VAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG---SVAYVPQQAWI-QNDSLRENILFGKALNE---KYYQQV---L-- 734 (1522)
T ss_pred EEEECCCCCCHHHHHHHHhCCCccCCcEEEECC---EEEEEcCCccc-cCCcHHHHhhcCCccCH---HHHHHH---H--
Confidence 999999999999999999999999999999986 69999999987 56799999975321000 000000 0
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEee
Q 008771 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLL 283 (554)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlL 283 (554)
..+ .+. +.++.+ |.. ...+....+|||||||||+||||++.+|+++||
T Consensus 735 -------------------~~~------~l~----~~l~~~~~g~~-t~ig~~g~~LSGGQkqRiaLARAl~~~~~illL 784 (1522)
T TIGR00957 735 -------------------EAC------ALL----PDLEILPSGDR-TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLF 784 (1522)
T ss_pred -------------------HHh------CCH----HHHHhcCCCCC-ceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 000 000 001111 211 123455679999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHcc-----CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 284 DEPTNHLDLDTIEWLEGYLGK-----QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 284 DEPt~~LD~~~~~~l~~~l~~-----~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||||++||+.+.+.+.+.+.+ .++|+|+|||+++++.. ||+|++|++|++. ..|++++.
T Consensus 785 DEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~-~~g~~~~l 848 (1522)
T TIGR00957 785 DDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKIS-EMGSYQEL 848 (1522)
T ss_pred cCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEE-eeCCHHHH
Confidence 999999999999999887632 47899999999999976 9999999999874 44554443
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=388.37 Aligned_cols=209 Identities=27% Similarity=0.425 Sum_probs=187.1
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v 166 (554)
+|+++||||.|+++.+++|+||+|++||+++|||||||||||+||+|+++++|++|+|.++|.++ +||||
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 58999999999999999999999999999999999999999999999999999999999998653 69999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
-|...+||++||.+|+..... ...++..++++++.++|..+
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~---------------------------------------L~~w~k~~i~~r~~ELl~lv 121 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPK---------------------------------------LLGWDKERIKKRADELLDLV 121 (309)
T ss_pred hhhcccCCCccHHHHHHhhhh---------------------------------------hcCCCHHHHHHHHHHHHHHh
Confidence 999999999999999864210 11345566788999999999
Q ss_pred CCCc-cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHh
Q 008771 247 GFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 247 gl~~-~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIiisHd~~~l~~ 321 (554)
||++ ++.+|+|++|||||+|||.+||||+.+|++||+|||+++|||.++..|.+.+ ++.++|||+||||++++..
T Consensus 122 gL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~k 201 (309)
T COG1125 122 GLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALK 201 (309)
T ss_pred CCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHh
Confidence 9986 6899999999999999999999999999999999999999999999887765 3579999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
++|||++|++|++.-|. ..++.+
T Consensus 202 Ladri~vm~~G~i~Q~~-~P~~il 224 (309)
T COG1125 202 LADRIAVMDAGEIVQYD-TPDEIL 224 (309)
T ss_pred hhceEEEecCCeEEEeC-CHHHHH
Confidence 99999999999987664 334333
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-50 Score=386.45 Aligned_cols=197 Identities=30% Similarity=0.428 Sum_probs=175.6
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----ceEEEEeccc
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEF 170 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----~~i~~v~Q~~ 170 (554)
..+.++++++.|++..+|+||||+|.+||+++||||||||||||||+|+|+.+|++|+|.++|.. ..++||||++
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 35899999999999999999999999999999999999999999999999999999999998864 3799999999
Q ss_pred ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc
Q 008771 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (554)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (554)
.++|..||.+|+..++.. ......+.++++.++|+.+||.
T Consensus 82 ~LlPW~Tv~~NV~l~l~~---------------------------------------~~~~~~e~~~~a~~~L~~VgL~- 121 (248)
T COG1116 82 ALLPWLTVLDNVALGLEL---------------------------------------RGKSKAEARERAKELLELVGLA- 121 (248)
T ss_pred cccchhhHHhhheehhhc---------------------------------------cccchHhHHHHHHHHHHHcCCc-
Confidence 999999999999754310 0112334456899999999996
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcceE
Q 008771 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIiisHd~~~l~~~~d~i 326 (554)
+..+++|++|||||||||+|||||+.+|++||||||+++||..++..+.+.| ++.+.|||+||||++++-.++|||
T Consensus 122 ~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRi 201 (248)
T COG1116 122 GFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRV 201 (248)
T ss_pred chhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEE
Confidence 5779999999999999999999999999999999999999999987776654 567899999999999999999999
Q ss_pred EEeeCC
Q 008771 327 VETEMG 332 (554)
Q Consensus 327 ~~l~~g 332 (554)
++|.++
T Consensus 202 vvl~~~ 207 (248)
T COG1116 202 VVLSNR 207 (248)
T ss_pred EEecCC
Confidence 999874
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=393.41 Aligned_cols=208 Identities=33% Similarity=0.545 Sum_probs=185.6
Q ss_pred cEEEEeEEEEeCC-----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------
Q 008771 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~-----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------- 161 (554)
+|++++|+|.|.. ..+|+||||+|++||++||||.||||||||+|+|+++..|++|+|.++|.+.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 5899999999975 4699999999999999999999999999999999999999999999998542
Q ss_pred ---eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 162 ---~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
+|||+||++.+..+.||++|+..++. ...++..+++++
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLe---------------------------------------iag~~k~ei~~R 121 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLE---------------------------------------LAGVPKAEIKQR 121 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHh---------------------------------------hcCCCHHHHHHH
Confidence 59999999999999999999975531 012345678899
Q ss_pred HHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEec
Q 008771 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISH 314 (554)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisH 314 (554)
+.++|+.+||+ +..+++|.+|||||||||+|||||+.+|+|||+|||||+|||++.+.+.++|+ +.|.||++|||
T Consensus 122 V~elLelVgL~-dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITH 200 (339)
T COG1135 122 VAELLELVGLS-DKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITH 200 (339)
T ss_pred HHHHHHHcCCh-hhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 99999999998 78899999999999999999999999999999999999999999988888874 47999999999
Q ss_pred CHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
.|+.+.++||||.+|++|+++. .|...+..
T Consensus 201 Em~Vvk~ic~rVavm~~G~lvE-~G~v~~vF 230 (339)
T COG1135 201 EMEVVKRICDRVAVLDQGRLVE-EGTVSEVF 230 (339)
T ss_pred hHHHHHHHhhhheEeeCCEEEE-eccHHHhh
Confidence 9999999999999999999854 45554443
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-50 Score=377.96 Aligned_cols=219 Identities=23% Similarity=0.408 Sum_probs=191.9
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-------------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------- 161 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------------- 161 (554)
.+.|++++|+++||++.+++||||+|++||+++|+|+||||||||+|+|.|+++|++|+|.++|.++
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 4569999999999999999999999999999999999999999999999999999999999998753
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
++|++||.-.+|.++||+||+...+.+.. .++...+++.+..
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~--------------------------------------~lp~~~i~~lv~~ 127 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHT--------------------------------------KLPESLIRELVLM 127 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhc--------------------------------------cCCHHHHHHHHHH
Confidence 59999999999999999999986543211 1233445566677
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~ 317 (554)
-|+.+||.....+++|++|||||++|++||||++.+|++|++||||+||||.+...+.++++ ..|.|+|+||||++
T Consensus 128 KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~ 207 (263)
T COG1127 128 KLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD 207 (263)
T ss_pred HHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH
Confidence 78999999877899999999999999999999999999999999999999988777666553 36999999999999
Q ss_pred HHHhhcceEEEeeCCeeeeccCChhHHHHHHHHHH
Q 008771 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWI 352 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~ 352 (554)
.+..+||||+++.+|++ .+.|++++.....+.|.
T Consensus 208 s~~~i~Drv~~L~~gkv-~~~Gt~~el~~sd~P~v 241 (263)
T COG1127 208 SLLTIADRVAVLADGKV-IAEGTPEELLASDDPWV 241 (263)
T ss_pred HHHhhhceEEEEeCCEE-EEeCCHHHHHhCCCHHH
Confidence 99999999999999997 67899887776554444
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=456.57 Aligned_cols=201 Identities=22% Similarity=0.329 Sum_probs=174.8
Q ss_pred CccEEEEeEEEEeC--CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------eE
Q 008771 95 SSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KI 163 (554)
Q Consensus 95 ~~~i~~~~ls~~y~--~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------~i 163 (554)
...|+++||++.|+ ++.+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 35699999999995 57899999999999999999999999999999999999999999999988542 59
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
||+||++.+++.+||.|++..... + ......+.++++.+++
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~---------------l------------------------kg~~~~~~~~~v~~lL 1046 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQ---------------L------------------------KGRSWEEAQLEMEAML 1046 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHH---------------h------------------------cCCCHHHHHHHHHHHH
Confidence 999999988889999999853210 0 0011123345678899
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~ 321 (554)
+.+||. +..++++.+|||||||||+||+||+.+|+||||||||++||+.+++.+.++|++ .|+|||++|||++++..
T Consensus 1047 ~~vgL~-~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~ 1125 (2272)
T TIGR01257 1047 EDTGLH-HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADL 1125 (2272)
T ss_pred HHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 999996 467899999999999999999999999999999999999999999999988754 48899999999999999
Q ss_pred hcceEEEeeCCeee
Q 008771 322 LCTKIVETEMGVSR 335 (554)
Q Consensus 322 ~~d~i~~l~~g~~~ 335 (554)
+||||++|++|++.
T Consensus 1126 laDrI~iL~~GkL~ 1139 (2272)
T TIGR01257 1126 LGDRIAIISQGRLY 1139 (2272)
T ss_pred hCCEEEEEECCEEE
Confidence 99999999999863
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=376.27 Aligned_cols=200 Identities=28% Similarity=0.507 Sum_probs=177.8
Q ss_pred ccEEEEeEEEEeCCee----eEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------
Q 008771 96 SGVKLENISKSYKGVT----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~----~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------- 160 (554)
++|+++|+++.|+... +|++|||+|.+||++||||+||||||||.|+|+|+.+|++|+|.++|..
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 5699999999998776 9999999999999999999999999999999999999999999999842
Q ss_pred ceEEEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 ~~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..|-+|||||. +.|..||.+.+..++. ..+..+.+++
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~-----------------------------------------~~~~~~~~~~ 120 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLR-----------------------------------------PHGLSKSQQR 120 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhc-----------------------------------------cCCccHHHHH
Confidence 35899999984 5677898877654321 0123445667
Q ss_pred HHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEEec
Q 008771 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISH 314 (554)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIiisH 314 (554)
+.++|+.+||+..+++|+|++|||||+|||||||||+.+|++||||||||+||+.....++++| ++++.|+|||||
T Consensus 121 i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsH 200 (252)
T COG1124 121 IAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISH 200 (252)
T ss_pred HHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999888888876 357899999999
Q ss_pred CHHHHHhhcceEEEeeCCeeee
Q 008771 315 DRAFLDQLCTKIVETEMGVSRT 336 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~~ 336 (554)
|+..+..+||||++|++|.++.
T Consensus 201 dl~~v~~~cdRi~Vm~~G~ivE 222 (252)
T COG1124 201 DLALVEHMCDRIAVMDNGQIVE 222 (252)
T ss_pred cHHHHHHHhhheeeeeCCeEEE
Confidence 9999999999999999999864
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=462.00 Aligned_cols=196 Identities=22% Similarity=0.339 Sum_probs=150.5
Q ss_pred EeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHh
Q 008771 106 SYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185 (554)
Q Consensus 106 ~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~ 185 (554)
.++++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+. ..|+|++|++.++ ..||+||+...
T Consensus 669 ~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~---~~i~yv~Q~~~l~-~~Tv~enI~~~ 744 (1560)
T PTZ00243 669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE---RSIAYVPQQAWIM-NATVRGNILFF 744 (1560)
T ss_pred ccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC---CeEEEEeCCCccC-CCcHHHHHHcC
Confidence 3455679999999999999999999999999999999999999999999875 3699999999874 67999999753
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCccccCCCCCCCChh
Q 008771 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSG 263 (554)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGG 263 (554)
..... +.....++ ...+.+.++.+ |+.. ..+....+||||
T Consensus 745 ~~~~~------~~~~~~~~-------------------------------~~~l~~~l~~l~~g~~t-~i~~~g~~LSGG 786 (1560)
T PTZ00243 745 DEEDA------ARLADAVR-------------------------------VSQLEADLAQLGGGLET-EIGEKGVNLSGG 786 (1560)
T ss_pred ChhhH------HHHHHHHH-------------------------------HhhhHHHHHHhhccchH-HhcCCCCCCCHH
Confidence 21000 00000000 00112223333 4432 335567899999
Q ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHH-H--ccCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCC
Q 008771 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-L--GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGN 340 (554)
Q Consensus 264 qrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~-l--~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~ 340 (554)
|||||+|||||+.+|++|||||||++||+.+.+.+.+. + ...|+|+|+||||++++. .||+|++|++|++ .+.|+
T Consensus 787 QkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i-~~~G~ 864 (1560)
T PTZ00243 787 QKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVP-RADYVVALGDGRV-EFSGS 864 (1560)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEE-EEecC
Confidence 99999999999999999999999999999987776553 2 124799999999999995 6999999999987 46677
Q ss_pred hhHHH
Q 008771 341 YSQYV 345 (554)
Q Consensus 341 ~~~~~ 345 (554)
|+++.
T Consensus 865 ~~~l~ 869 (1560)
T PTZ00243 865 SADFM 869 (1560)
T ss_pred HHHHH
Confidence 76653
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=380.88 Aligned_cols=212 Identities=27% Similarity=0.434 Sum_probs=180.2
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v 166 (554)
+++++|++++|+++++|+|+||+|++|++++|+||||||||||||+|+|+++|.+|+|.++|.+. .++||
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 48999999999999999999999999999999999999999999999999999999999999653 69999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
||.+...+..||.|.+..+-..... .+ .....+-++.+.+.|+.+
T Consensus 82 pQ~~~~~~~~tV~d~V~~GR~p~~~--------------------~~---------------~~~~~~D~~~v~~aL~~~ 126 (258)
T COG1120 82 PQSPSAPFGLTVYELVLLGRYPHLG--------------------LF---------------GRPSKEDEEIVEEALELL 126 (258)
T ss_pred ccCCCCCCCcEEeehHhhcCCcccc--------------------cc---------------cCCCHhHHHHHHHHHHHh
Confidence 9999888899999987643110000 00 000112234688889999
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhh
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~ 322 (554)
|+. ++.+|.+.+|||||||||.|||||+++|++||||||||+||....-.+++.++ +.|.|+|+|.||++++.++
T Consensus 127 ~~~-~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 127 GLE-HLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARY 205 (258)
T ss_pred CcH-HHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 996 57899999999999999999999999999999999999999999888887764 4689999999999999999
Q ss_pred cceEEEeeCCeeeeccCChhHHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
||++++|++|++ .+.|...+.+
T Consensus 206 ad~~i~lk~G~i-~a~G~p~evl 227 (258)
T COG1120 206 ADHLILLKDGKI-VAQGTPEEVL 227 (258)
T ss_pred CCEEEEEECCeE-EeecCcchhc
Confidence 999999999997 5566655443
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=449.60 Aligned_cols=184 Identities=23% Similarity=0.379 Sum_probs=142.0
Q ss_pred eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHhhHHH
Q 008771 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEE 189 (554)
Q Consensus 110 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~ 189 (554)
+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .|+|++|++.++. .||+||+..+....
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g---~iayv~Q~~~l~~-~Ti~eNI~~g~~~~ 514 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG---RISFSPQTSWIMP-GTIKDNIIFGLSYD 514 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC---EEEEEeCCCccCC-ccHHHHHHhccccc
Confidence 3589999999999999999999999999999999999999999999986 6999999998865 59999997542100
Q ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC-ccccCCCCCCCChhHHHHH
Q 008771 190 MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-ADDGDRLVASFSSGWQMRM 268 (554)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~~~~LSGGqrqRv 268 (554)
.. ....+ + ..+ .+.+.+..+... .........+|||||||||
T Consensus 515 ~~---~~~~~---~---------------------~~~----------~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi 557 (1490)
T TIGR01271 515 EY---RYTSV---I---------------------KAC----------QLEEDIALFPEKDKTVLGEGGITLSGGQRARI 557 (1490)
T ss_pred hH---HHHHH---H---------------------HHH----------hHHHHHHhccccccccccCcCCCcCHHHHHHH
Confidence 00 00000 0 000 011112222110 0112344679999999999
Q ss_pred HHHHHHccCCCeEeecCCCCCCCHHHHHHHHHH-Hcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeee
Q 008771 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 269 ~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~ 335 (554)
+||||++.+|+++||||||++||+.+.+.+.+. +.. .++|+|+|||+++++.. ||+|++|++|++.
T Consensus 558 ~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~ 626 (1490)
T TIGR01271 558 SLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKK-ADKILLLHEGVCY 626 (1490)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHh-CCEEEEEECCEEE
Confidence 999999999999999999999999999988864 332 48999999999999975 9999999999763
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-48 Score=376.05 Aligned_cols=214 Identities=27% Similarity=0.428 Sum_probs=179.5
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------ceEEEEe
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLS 167 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------~~i~~v~ 167 (554)
.++|+++|+++.|++.++|+||||+|++|++++||||||||||||+|+|+|+++|++|+|.+.|.+ .+|||||
T Consensus 2 ~~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 2 MPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred CcEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 356999999999987689999999999999999999999999999999999999999999988753 4799999
Q ss_pred ccc--ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 168 QEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 168 Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
|.. ...+..||+|.+..+...... ++ .... ..-.+.+.++|+.
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g--------------------~~--------------~~~~-~~d~~~v~~aL~~ 126 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKG--------------------WF--------------RRLN-KKDKEKVDEALER 126 (254)
T ss_pred cccccCCCCCcCHHHHHHccCccccc--------------------cc--------------cccc-HHHHHHHHHHHHH
Confidence 966 334567999987654211000 00 0011 1125678999999
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~~ 322 (554)
+|+. +..+|.+.+|||||+|||.|||||+.+|++|||||||+++|+.+...+.++|+ +.|+|||+||||+..+..+
T Consensus 127 Vgm~-~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 127 VGME-DLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAY 205 (254)
T ss_pred cCch-hhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhh
Confidence 9997 68899999999999999999999999999999999999999999999888764 3599999999999999999
Q ss_pred cceEEEeeCCeeeeccCChhHHHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||+|+.|+... .+.|+..++..
T Consensus 206 ~D~vi~Ln~~~--~~~G~~~~~~~ 227 (254)
T COG1121 206 FDRVICLNRHL--IASGPPEEVLT 227 (254)
T ss_pred CCEEEEEcCee--EeccChhhccC
Confidence 99999998764 46777766554
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-48 Score=394.35 Aligned_cols=212 Identities=28% Similarity=0.440 Sum_probs=185.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc--------eEEEEe
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLS 167 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~--------~i~~v~ 167 (554)
+.|+++||+++|++..+++|+||+|++||+++|+||||||||||||+|+|++.|++|+|.++|.++ .|||||
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VF 83 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVF 83 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceee
Confidence 569999999999999999999999999999999999999999999999999999999999998643 599999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
|+..+||++||.+|+..++... ......++.+++.++|+.++
T Consensus 84 Q~YALFPHltV~~NVafGLk~~--------------------------------------~~~~~~~i~~rv~e~L~lV~ 125 (352)
T COG3842 84 QSYALFPHMTVEENVAFGLKVR--------------------------------------KKLKKAEIKARVEEALELVG 125 (352)
T ss_pred cCcccCCCCcHHHHhhhhhhhc--------------------------------------CCCCHHHHHHHHHHHHHHcC
Confidence 9999999999999997654200 01122346789999999999
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHH----HccCCCeEEEEecCHHHHHhhc
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY----LGKQDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~----l~~~g~tvIiisHd~~~l~~~~ 323 (554)
+. .+.+|+|++|||||||||||||||+.+|++||||||.|+||..-+..+... .++.|.|+|+||||.+++..++
T Consensus 126 L~-~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~ms 204 (352)
T COG3842 126 LE-GFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMS 204 (352)
T ss_pred ch-hhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhc
Confidence 97 478999999999999999999999999999999999999999887766554 4567999999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHHHHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
|||++|++|++. -.|...++..+
T Consensus 205 DrI~Vm~~G~I~-Q~gtP~eiY~~ 227 (352)
T COG3842 205 DRIAVMNDGRIE-QVGTPEEIYER 227 (352)
T ss_pred cceEEccCCcee-ecCCHHHHhhC
Confidence 999999999984 45555555443
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=365.96 Aligned_cols=198 Identities=28% Similarity=0.455 Sum_probs=171.3
Q ss_pred cEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------------
Q 008771 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------ 160 (554)
+++++||++.|+. ..+|+++||+|++||+++|+|||||||||||++|.|+..|++|.|.++|.+
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 3689999999953 379999999999999999999999999999999999999999999999843
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..||||||++.+.+.+||.||+..+..- ..........+
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~---------------------------------------~~~~~~~~~~~ 121 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLI---------------------------------------AGKSAGRRKRA 121 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHH---------------------------------------cCCChhHHHHH
Confidence 2599999999999999999999753210 00011134567
Q ss_pred HHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEec
Q 008771 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISH 314 (554)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisH 314 (554)
+..+++.+|+.+...+++|.+|||||||||||||||+.+|++||.||||.+||.++.+.+.++++ +.|.|+|||||
T Consensus 122 ~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTH 201 (226)
T COG1136 122 AEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH 201 (226)
T ss_pred HHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 88889999998666668899999999999999999999999999999999999999988888764 45899999999
Q ss_pred CHHHHHhhcceEEEeeCCee
Q 008771 315 DRAFLDQLCTKIVETEMGVS 334 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~ 334 (554)
|...+. .|||++.|.+|++
T Consensus 202 d~~lA~-~~dr~i~l~dG~~ 220 (226)
T COG1136 202 DPELAK-YADRVIELKDGKI 220 (226)
T ss_pred CHHHHH-hCCEEEEEeCCee
Confidence 999886 7999999999974
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-48 Score=375.36 Aligned_cols=210 Identities=29% Similarity=0.464 Sum_probs=182.8
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCC---C--------ceEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS---N--------MKIAF 165 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~---~--------~~i~~ 165 (554)
+|.++|+++.|+...+++||||.|+.||.+||+||||||||||||+|+|++.|++|.|.++|. + .+|||
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGf 81 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeE
Confidence 489999999999999999999999999999999999999999999999999999999999986 2 36999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
|||+..+|+.+||.+||..+..-. ....+...+..++.++|+.
T Consensus 82 vFQ~YALF~HmtVa~NIAFGl~~~-------------------------------------~~~p~~~~~r~rv~elL~l 124 (345)
T COG1118 82 VFQHYALFPHMTVADNIAFGLKVR-------------------------------------KERPSEAEIRARVEELLRL 124 (345)
T ss_pred EEechhhcccchHHhhhhhccccc-------------------------------------ccCCChhhHHHHHHHHHHH
Confidence 999999999999999998664210 0012234567889999999
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIiisHd~~~l~~ 321 (554)
+.|+ ...+++|.+|||||||||||||||+.+|++||||||+++||...+..|..+| .+.|.|+|+||||.+++.+
T Consensus 125 vqL~-~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ 203 (345)
T COG1118 125 VQLE-GLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALE 203 (345)
T ss_pred hccc-chhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHh
Confidence 9996 5779999999999999999999999999999999999999998876666655 4579999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+||||++|++|++.. .|+.++..
T Consensus 204 ladrvvvl~~G~Ieq-vg~p~ev~ 226 (345)
T COG1118 204 LADRVVVLNQGRIEQ-VGPPDEVY 226 (345)
T ss_pred hcceEEEecCCeeee-eCCHHHHh
Confidence 999999999999743 45554443
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=386.76 Aligned_cols=203 Identities=30% Similarity=0.452 Sum_probs=180.8
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEe
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~ 167 (554)
..|+++||+|+||+..+++++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..|+|||
T Consensus 2 ~~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred cEEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 45899999999987669999999999999999999999999999999999999999999999854 3699999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
|+..+||.+||++|+..+++. ..+..+++++++.++.+.++
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~---------------------------------------~~~~k~ei~~rV~eva~~L~ 122 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKL---------------------------------------RGVPKAEIDKRVKEVAKLLG 122 (338)
T ss_pred CCccccCCCcHHHHhhhhhhh---------------------------------------CCCchHHHHHHHHHHHHHcC
Confidence 999999999999999765321 12344667889999999999
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhc
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIiisHd~~~l~~~~ 323 (554)
+. +.++|+|.+|||||||||||||||+.+|+++|||||+|+||...+..+...+ ++.+.|+|+||||..++..++
T Consensus 123 l~-~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtla 201 (338)
T COG3839 123 LE-HLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLA 201 (338)
T ss_pred Ch-hHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhC
Confidence 97 5789999999999999999999999999999999999999998877665554 357899999999999999999
Q ss_pred ceEEEeeCCeeeecc
Q 008771 324 TKIVETEMGVSRTYE 338 (554)
Q Consensus 324 d~i~~l~~g~~~~~~ 338 (554)
|||++|++|++.-..
T Consensus 202 dri~Vm~~G~i~Q~g 216 (338)
T COG3839 202 DRIVVMNDGRIQQVG 216 (338)
T ss_pred CEEEEEeCCeeeecC
Confidence 999999999885443
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-47 Score=356.30 Aligned_cols=215 Identities=24% Similarity=0.412 Sum_probs=183.8
Q ss_pred ccEEEEeEEEEe-CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------c
Q 008771 96 SGVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (554)
Q Consensus 96 ~~i~~~~ls~~y-~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------~ 161 (554)
.+|+++||++.| +++.+|+||||+|++||+++|||+||||||||||+|+|+..|++|+|.++|.+ .
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 469999999999 77899999999999999999999999999999999999999999999999853 2
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
.|||+||.+.+.+..+|.+|++.+...... + +...+ .+...+-...+-+
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s--------------------~----------~~slf-glfsk~dk~~Al~ 130 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTS--------------------T----------WRSLF-GLFSKEDKAQALD 130 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccch--------------------H----------HHHHh-CCCCHHHHHHHHH
Confidence 599999999999999999999754311100 0 00011 1122334566788
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~ 317 (554)
.|+++|+. +...++..+|||||+|||+|||||+++|+++|.|||+++|||.+.+.+++.|+ +.|.|+|+..|+++
T Consensus 131 aLervgi~-~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd 209 (258)
T COG3638 131 ALERVGIL-DKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD 209 (258)
T ss_pred HHHHcCcH-HHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 89999996 45677789999999999999999999999999999999999999888888875 46999999999999
Q ss_pred HHHhhcceEEEeeCCeeeeccCChhH
Q 008771 318 FLDQLCTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~~~~G~~~~ 343 (554)
++.++||||+-|++|++ +|+|+.++
T Consensus 210 lA~~Y~~Riigl~~G~i-vfDg~~~e 234 (258)
T COG3638 210 LAKKYADRIIGLKAGRI-VFDGPASE 234 (258)
T ss_pred HHHHHHhhheEecCCcE-EEeCChhh
Confidence 99999999999999997 78998766
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=440.88 Aligned_cols=199 Identities=19% Similarity=0.154 Sum_probs=156.3
Q ss_pred eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCC----CCCceeEEEcCCC---------ceEEEEecccccccCc
Q 008771 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE----EPDSGNVIKAKSN---------MKIAFLSQEFEVSMSR 176 (554)
Q Consensus 110 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~----~p~~G~I~~~~~~---------~~i~~v~Q~~~~~~~~ 176 (554)
+++|+|+|++|++||+++|+||||||||||+|+|+|.. +|++|+|.++|.+ ..++|++|+..+++.+
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 56999999999999999999999999999999999986 5799999998853 2399999998888899
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH-HHHHHHhhhcCCCccccC-
Q 008771 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD-AKVSKLMPELGFTADDGD- 254 (554)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~lgl~~~~~~- 254 (554)
||.|++..+..-. . .... . ......+.. ..++.+++.+||.+ ..+
T Consensus 154 TV~E~l~f~~~~~-------------~-~~~~----~--------------~~~~~~~~~~~~~~~~l~~lgL~~-~~~t 200 (1394)
T TIGR00956 154 TVGETLDFAARCK-------------T-PQNR----P--------------DGVSREEYAKHIADVYMATYGLSH-TRNT 200 (1394)
T ss_pred CHHHHHHHHHHhC-------------C-CCCC----C--------------CCCCHHHHHHHHHHHHHHHcCccc-ccCc
Confidence 9999986431100 0 0000 0 000011111 22456788899964 333
Q ss_pred ----CCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCH-HHHHhhcce
Q 008771 255 ----RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR-AFLDQLCTK 325 (554)
Q Consensus 255 ----~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~-~~l~~~~d~ 325 (554)
..+..|||||||||+||++|+.+|+||+|||||+|||+.+...+.+.|++ .|.|+|+++|++ +.+.+++|+
T Consensus 201 ~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~ 280 (1394)
T TIGR00956 201 KVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDK 280 (1394)
T ss_pred eeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhce
Confidence 34678999999999999999999999999999999999999988887753 488999999996 788899999
Q ss_pred EEEeeCCeeeeccCChh
Q 008771 326 IVETEMGVSRTYEGNYS 342 (554)
Q Consensus 326 i~~l~~g~~~~~~G~~~ 342 (554)
|++|++|++ .|.|+.+
T Consensus 281 v~~L~~G~i-v~~G~~~ 296 (1394)
T TIGR00956 281 VIVLYEGYQ-IYFGPAD 296 (1394)
T ss_pred EEEEeCCeE-EEECCHH
Confidence 999999986 4556554
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-47 Score=344.92 Aligned_cols=202 Identities=28% Similarity=0.479 Sum_probs=179.6
Q ss_pred cEEEEeEEEEeCC-eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-------------e
Q 008771 97 GVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------------K 162 (554)
Q Consensus 97 ~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-------------~ 162 (554)
+|+++||++.|++ .++|+||||+|++||++.|+||||||||||+|+|++..+|++|+|.++|.+. +
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 5899999999964 5599999999999999999999999999999999999999999999998642 6
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
||+||||..+.+..||+||+..++. .......++.+++.++
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~---------------------------------------v~G~~~~~i~~rV~~~ 121 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLR---------------------------------------VIGKPPREIRRRVSEV 121 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhh---------------------------------------ccCCCHHHHHHHHHHH
Confidence 9999999999999999999975431 0123456678899999
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFL 319 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd~~~l 319 (554)
|+.+||. +..+..|.+|||||||||+||||++.+|++||.||||-+|||.....+++++ ...|+||||.|||.+.+
T Consensus 122 L~~VgL~-~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv 200 (223)
T COG2884 122 LDLVGLK-HKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELV 200 (223)
T ss_pred HHHhccc-hhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHH
Confidence 9999997 4667889999999999999999999999999999999999999877776665 46799999999999999
Q ss_pred HhhcceEEEeeCCeeeecc
Q 008771 320 DQLCTKIVETEMGVSRTYE 338 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~~~~ 338 (554)
+++-.|++.+++|++..+.
T Consensus 201 ~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 201 NRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HhccCcEEEEeCCEEEecc
Confidence 9999999999999986554
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=365.23 Aligned_cols=210 Identities=28% Similarity=0.442 Sum_probs=183.5
Q ss_pred ccEEEEeEEEEeCCe-eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceE
Q 008771 96 SGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~-~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i 163 (554)
+++.++|++|+|++. .+|+++||+|++|++++|+|+||||||||+++|+|+++|++|.|.++|.+ .+|
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 468999999999765 89999999999999999999999999999999999999999999998854 259
Q ss_pred EEEecccccc-cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 164 AFLSQEFEVS-MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 164 ~~v~Q~~~~~-~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
|||+|+|..+ +..||.+.+..+..+ ..+..+++++++.++
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n---------------------------------------~g~~~~e~~~rv~~~ 122 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLEN---------------------------------------LGLPREEIEERVAEA 122 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhh---------------------------------------cCCCHHHHHHHHHHH
Confidence 9999999655 577999988654311 123445678899999
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~ 318 (554)
+..+|+.. ..++++++|||||||||+||.+|+++|++|||||||++||+.++..+.+++++ .|+|+|++|||+++
T Consensus 123 l~~vgl~~-~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~ 201 (235)
T COG1122 123 LELVGLEE-LLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL 201 (235)
T ss_pred HHHcCchh-hccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH
Confidence 99999974 58999999999999999999999999999999999999999999999888753 36899999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+..+||++++|++|++ .+.|...++..
T Consensus 202 ~~~~ad~v~vl~~G~i-~~~g~p~~i~~ 228 (235)
T COG1122 202 VLEYADRVVVLDDGKI-LADGDPAEIFN 228 (235)
T ss_pred HHhhCCEEEEEECCEE-eecCCHHHHhh
Confidence 9999999999999997 67777554443
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-46 Score=382.41 Aligned_cols=209 Identities=27% Similarity=0.448 Sum_probs=180.3
Q ss_pred cEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------------
Q 008771 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------ 160 (554)
+|+++||+++|++ .++|+||||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 4899999999952 479999999999999999999999999999999999999999999998753
Q ss_pred -ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 161 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
..|||+||++.+++..||.+|+..+... ......+..+++
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~v 121 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLEL---------------------------------------DNTPKDEIKRKV 121 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHH
Confidence 2599999999998889999998642100 001222345678
Q ss_pred HHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 008771 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (554)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd 315 (554)
.++++.+||. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+...+.++|++ .|.|||+||||
T Consensus 122 ~e~l~~vgL~-~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~ 200 (343)
T TIGR02314 122 TELLALVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE 200 (343)
T ss_pred HHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 8899999996 567899999999999999999999999999999999999999999999888754 48999999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
++.+.++||+|++|++|++. ..|+..++..
T Consensus 201 ~~~v~~~~d~v~vl~~G~iv-~~g~~~~v~~ 230 (343)
T TIGR02314 201 MDVVKRICDCVAVISNGELI-EQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCEEEEEECCEEE-EEcCHHHHHc
Confidence 99999999999999999984 5677766543
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=377.97 Aligned_cols=208 Identities=27% Similarity=0.440 Sum_probs=180.1
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v 166 (554)
.+|+++||+|+|++..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ ..|||+
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v 85 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVV 85 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEE
Confidence 56999999999998899999999999999999999999999999999999999999999998854 259999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
||++.+++.+||.||+..... + ......+...++.++++.+
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~---------------~------------------------~~~~~~~~~~~~~~~l~~~ 126 (306)
T PRK13537 86 PQFDNLDPDFTVRENLLVFGR---------------Y------------------------FGLSAAAARALVPPLLEFA 126 (306)
T ss_pred eccCcCCCCCcHHHHHHHHHH---------------H------------------------cCCCHHHHHHHHHHHHHHc
Confidence 999999888999999753100 0 0011122345677888999
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhc
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~ 323 (554)
|+. ...++++.+||||||||++||+||+.+|++|||||||+|||+.++.++.+++++ .|.|||++||+++++.++|
T Consensus 127 ~l~-~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~ 205 (306)
T PRK13537 127 KLE-NKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLC 205 (306)
T ss_pred CCc-hHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC
Confidence 986 467889999999999999999999999999999999999999999999888754 5899999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|+|++|++|++ .+.|+.+++
T Consensus 206 d~i~il~~G~i-~~~g~~~~l 225 (306)
T PRK13537 206 DRLCVIEEGRK-IAEGAPHAL 225 (306)
T ss_pred CEEEEEECCEE-EEECCHHHH
Confidence 99999999998 566776544
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=363.57 Aligned_cols=207 Identities=29% Similarity=0.433 Sum_probs=176.2
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------ceEE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MKIA 164 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------~~i~ 164 (554)
|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 478999999998899999999999999999999999999999999999999999999998732 2489
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|++|++.+++..||.+|+...... . .....+....++.++++
T Consensus 81 ~v~q~~~~~~~~tv~~~l~~~~~~---------------~-----------------------~~~~~~~~~~~~~~~l~ 122 (235)
T cd03261 81 MLFQSGALFDSLTVFENVAFPLRE---------------H-----------------------TRLSEEEIREIVLEKLE 122 (235)
T ss_pred EEccCcccCCCCcHHHHHHHHHhh---------------c-----------------------cCCCHHHHHHHHHHHHH
Confidence 999999888888999998532100 0 00011223456778889
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHH
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~ 320 (554)
.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||++++.
T Consensus 123 ~~~l~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~ 201 (235)
T cd03261 123 AVGLR-GAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAF 201 (235)
T ss_pred HcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence 99996 456889999999999999999999999999999999999999999999888754 4889999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChhHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
.+||+|++|++|++ .+.|+++++
T Consensus 202 ~~~d~v~~l~~G~i-~~~g~~~~~ 224 (235)
T cd03261 202 AIADRIAVLYDGKI-VAEGTPEEL 224 (235)
T ss_pred HhcCEEEEEECCeE-EEecCHHHH
Confidence 99999999999987 456766554
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=359.02 Aligned_cols=197 Identities=26% Similarity=0.446 Sum_probs=169.5
Q ss_pred cEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------c
Q 008771 97 GVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------~ 161 (554)
+|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 4789999999964 479999999999999999999999999999999999999999999998743 1
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
.|+|++|++.+++..||.+|+...... .....+..++++.+
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~ 121 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRI---------------------------------------IGVPPRDANERVSA 121 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHH
Confidence 489999999888888999998532100 00011123456778
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~ 318 (554)
+++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.+.|++ .+.|||+||||+++
T Consensus 122 ~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~ 200 (216)
T TIGR00960 122 ALEKVGLE-GKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINL 200 (216)
T ss_pred HHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 89999996 456888999999999999999999999999999999999999999999888754 48899999999999
Q ss_pred HHhhcceEEEeeCCe
Q 008771 319 LDQLCTKIVETEMGV 333 (554)
Q Consensus 319 l~~~~d~i~~l~~g~ 333 (554)
+..+||+|++|++|+
T Consensus 201 ~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 201 VETYRHRTLTLSRGR 215 (216)
T ss_pred HHHhCCEEEEEeCCc
Confidence 999999999999986
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=380.82 Aligned_cols=209 Identities=26% Similarity=0.394 Sum_probs=181.3
Q ss_pred cEEEEeEEEEe-CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEe
Q 008771 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (554)
Q Consensus 97 ~i~~~~ls~~y-~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~ 167 (554)
+|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..|||||
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 58999999999 77889999999999999999999999999999999999999999999999853 2599999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
|++.+++.+||.+|+..+... ......+...++.++++.+|
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~g 123 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKI---------------------------------------RGMPKAEIEERVAEAARILE 123 (356)
T ss_pred CCccccCCCCHHHHHHhHHhh---------------------------------------cCCCHHHHHHHHHHHHHHcC
Confidence 999999999999998643210 00112234567888999999
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhc
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~ 323 (554)
|. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+ +.|.|+|+||||++++..+|
T Consensus 124 L~-~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~ 202 (356)
T PRK11650 124 LE-PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLA 202 (356)
T ss_pred Ch-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 96 57899999999999999999999999999999999999999999998887764 35899999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHHHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
|+|++|++|++. ..|+..++..
T Consensus 203 D~i~vl~~G~i~-~~g~~~~~~~ 224 (356)
T PRK11650 203 DRVVVMNGGVAE-QIGTPVEVYE 224 (356)
T ss_pred CEEEEEeCCEEE-EECCHHHHHh
Confidence 999999999984 4566665543
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-46 Score=341.87 Aligned_cols=208 Identities=30% Similarity=0.484 Sum_probs=183.7
Q ss_pred cEEEEeEEEEeCCee-eEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------eEEEE
Q 008771 97 GVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFL 166 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~-~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------~i~~v 166 (554)
+|++.+++++|++.. +++||||++++|+++||+|+|||||||+||+|++++.|++|.|.++|.+. +||.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 589999999999875 99999999999999999999999999999999999999999999998653 69999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
+-+..++..+|++||+...- . ...+...++++++.++.+.+
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa----------------------------~-----------L~~l~~~~~kari~~l~k~l 121 (245)
T COG4555 81 FGERGLYARLTARENLKYFA----------------------------R-----------LNGLSRKEIKARIAELSKRL 121 (245)
T ss_pred cCCcChhhhhhHHHHHHHHH----------------------------H-----------HhhhhhhHHHHHHHHHHHHh
Confidence 98888999999999986421 0 01234456788899999999
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHHhhc
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd~~~l~~~~ 323 (554)
++. +..++.+..||-||||||+|||||+++|+++||||||||||..+...+.+++ ++.|.+|||+||+++++..+|
T Consensus 122 ~l~-~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealC 200 (245)
T COG4555 122 QLL-EYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALC 200 (245)
T ss_pred ChH-HHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhh
Confidence 996 5779999999999999999999999999999999999999999999888876 456999999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|+|+++++|.+ ++.|+..+..
T Consensus 201 Drvivlh~Gev-v~~gs~~~l~ 221 (245)
T COG4555 201 DRVIVLHKGEV-VLEGSIEALD 221 (245)
T ss_pred heEEEEecCcE-EEcCCHHHHH
Confidence 99999999987 6778766543
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=379.22 Aligned_cols=210 Identities=24% Similarity=0.385 Sum_probs=182.5
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEE
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFL 166 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v 166 (554)
+++|+++||++.|++..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..||||
T Consensus 4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 346999999999998889999999999999999999999999999999999999999999998853 369999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
||++.+++.+||.+|+..++.. ......+..+++.++++.+
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~~~ 124 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKM---------------------------------------LGVPKEERKQRVKEALELV 124 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhH---------------------------------------cCCCHHHHHHHHHHHHHHc
Confidence 9999999999999998643210 0012233456788899999
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhh
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~ 322 (554)
|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +.|.|+|+||||++++..+
T Consensus 125 gl~-~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~l 203 (351)
T PRK11432 125 DLA-GFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAV 203 (351)
T ss_pred CCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence 996 46789999999999999999999999999999999999999999998888764 3589999999999999999
Q ss_pred cceEEEeeCCeeeeccCChhHHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
||+|++|++|++. ..|+.+++.
T Consensus 204 aD~i~vm~~G~i~-~~g~~~~~~ 225 (351)
T PRK11432 204 SDTVIVMNKGKIM-QIGSPQELY 225 (351)
T ss_pred CCEEEEEECCEEE-EEcCHHHHH
Confidence 9999999999985 456665543
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=369.89 Aligned_cols=208 Identities=30% Similarity=0.505 Sum_probs=179.6
Q ss_pred ccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEE
Q 008771 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAF 165 (554)
Q Consensus 96 ~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~ 165 (554)
..++++||++.|+ ++.+|+||||+|++|+++||+||||||||||+|+|+|++.|++|+|.++|.+ .+|||
T Consensus 3 ~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy 82 (293)
T COG1131 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGY 82 (293)
T ss_pred ceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEE
Confidence 3478999999999 6999999999999999999999999999999999999999999999999843 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
+||++.+++.+||+|++..... + ........+++++++++.
T Consensus 83 ~~~~~~~~~~lT~~e~l~~~~~---------------l------------------------~~~~~~~~~~~~~~~l~~ 123 (293)
T COG1131 83 VPQEPSLYPELTVRENLEFFAR---------------L------------------------YGLSKEEAEERIEELLEL 123 (293)
T ss_pred EccCCCCCccccHHHHHHHHHH---------------H------------------------hCCChhHHHHHHHHHHHH
Confidence 9999999999999999753210 0 000112345688999999
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CC-CeEEEEecCHHHHHh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QD-VPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g-~tvIiisHd~~~l~~ 321 (554)
+||.. ..++++.+||+|||||++||.||+.+|++|||||||+|||+.++..+.++|++ .| .|||++||.++++..
T Consensus 124 ~~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~ 202 (293)
T COG1131 124 FGLED-KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEE 202 (293)
T ss_pred cCCch-hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHH
Confidence 99986 44788999999999999999999999999999999999999999999988753 45 799999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+||+|++|++|++ .+.|...++
T Consensus 203 ~~d~v~il~~G~~-~~~g~~~~l 224 (293)
T COG1131 203 LCDRVIILNDGKI-IAEGTPEEL 224 (293)
T ss_pred hCCEEEEEeCCEE-EEeCCHHHH
Confidence 9999999999998 455665553
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=355.79 Aligned_cols=198 Identities=32% Similarity=0.470 Sum_probs=170.9
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEecc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (554)
|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|+||+
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 478999999988889999999999999999999999999999999999999999999998743 259999999
Q ss_pred cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
+.+++..|+.+|+...... . .........++.++++.+|+.
T Consensus 81 ~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~ 121 (213)
T cd03259 81 YALFPHLTVAENIAFGLKL---------------R------------------------GVPKAEIRARVRELLELVGLE 121 (213)
T ss_pred hhhccCCcHHHHHHhHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCCh
Confidence 9888888999998532100 0 000112234567788899996
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcce
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~ 325 (554)
...++++.+||||||||++|||||+.+|++|||||||++||+.++.++.+.|++ .|.|||+||||++++.++||+
T Consensus 122 -~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 200 (213)
T cd03259 122 -GLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADR 200 (213)
T ss_pred -hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCE
Confidence 456888999999999999999999999999999999999999999999988754 488999999999999999999
Q ss_pred EEEeeCCeee
Q 008771 326 IVETEMGVSR 335 (554)
Q Consensus 326 i~~l~~g~~~ 335 (554)
|++|++|++.
T Consensus 201 v~~l~~G~i~ 210 (213)
T cd03259 201 IAVMNEGRIV 210 (213)
T ss_pred EEEEECCEEE
Confidence 9999999874
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=379.24 Aligned_cols=210 Identities=29% Similarity=0.448 Sum_probs=182.3
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEe
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~ 167 (554)
.+|+++||+++|++..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..|||||
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 35999999999998889999999999999999999999999999999999999999999998853 2599999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
|++.+++.+||.+|+..++.. ......+...++.++++.+|
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~l~ 123 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKN---------------------------------------RGMGRAEVAERVAELLDLVG 123 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcC
Confidence 999999999999998643210 00112234567888999999
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhc
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~ 323 (554)
|. ...++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +.+.|+|+||||++++..+|
T Consensus 124 L~-~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~ 202 (353)
T TIGR03265 124 LP-GSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMA 202 (353)
T ss_pred CC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 96 47799999999999999999999999999999999999999999998888764 35899999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHHHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
|+|++|++|++. ..|+..++..
T Consensus 203 d~i~vl~~G~i~-~~g~~~~~~~ 224 (353)
T TIGR03265 203 DRIVVMNHGVIE-QVGTPQEIYR 224 (353)
T ss_pred CEEEEEECCEEE-EEcCHHHHHh
Confidence 999999999984 4566555443
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-44 Score=409.81 Aligned_cols=256 Identities=22% Similarity=0.339 Sum_probs=185.9
Q ss_pred HhhHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC---eeeEEceeEEEEC
Q 008771 46 TCQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKK 122 (554)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~---~~~l~~isl~i~~ 122 (554)
...+...+.-+.+..++..+++|+-+....+......... .+.......++++|.+++.+. .+.|+||||+|++
T Consensus 470 r~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~---~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~ 546 (1381)
T KOG0054|consen 470 RFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVER---SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKK 546 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccc---CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecC
Confidence 3466666666677888888888886655444322211110 122234456999999999864 3489999999999
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHH
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKA 202 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~ 202 (554)
|+.+||||+-|||||+|+.+|.|.++..+|+|.+.| .++||||.|.+ ++.||+|||..+-.-..+.
T Consensus 547 G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g---siaYv~Q~pWI-~ngTvreNILFG~~~d~~r---------- 612 (1381)
T KOG0054|consen 547 GQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG---SVAYVPQQPWI-QNGTVRENILFGSPYDEER---------- 612 (1381)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC---eEEEeccccHh-hCCcHHHhhhcCccccHHH----------
Confidence 999999999999999999999999999999999987 49999999988 5679999998653211000
Q ss_pred HhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEe
Q 008771 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLL 282 (554)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLl 282 (554)
++.....|. + +.-+ ++|..-.. ....+| --+|||||||||+||||+.+++||+|
T Consensus 613 -----------------Y~~Vi~aC~-L-----~~Dl-e~Lp~GD~-TeIGEr-GinLSGGQKqRIsLARAVY~~adIYL 666 (1381)
T KOG0054|consen 613 -----------------YDKVIKACA-L-----KKDL-EILPFGDL-TEIGER-GINLSGGQKQRISLARAVYQDADIYL 666 (1381)
T ss_pred -----------------HHHHHHHcc-C-----HhHH-hhcCCCCc-ceecCC-ccCCcHhHHHHHHHHHHHhccCCEEE
Confidence 000000000 0 0000 00110000 112233 34899999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHH-Hcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 283 LDEPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 283 LDEPt~~LD~~~~~~l~~~-l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||-|.|++|.+.-.++.+. ++. .++|+|+|||.++++.+ ||.|++|++|++ ...|+|++...
T Consensus 667 LDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~-ad~Iivl~~G~I-~~~Gty~el~~ 731 (1381)
T KOG0054|consen 667 LDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPH-ADQIIVLKDGKI-VESGTYEELLK 731 (1381)
T ss_pred EcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhh-CCEEEEecCCeE-ecccCHHHHHh
Confidence 9999999999987777654 432 47999999999999975 999999999997 67899998874
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-45 Score=375.91 Aligned_cols=209 Identities=28% Similarity=0.448 Sum_probs=179.4
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEE
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAF 165 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~ 165 (554)
..+|+++||+++|+++.+|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+ ..|||
T Consensus 39 ~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~ 118 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGV 118 (340)
T ss_pred ceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEE
Confidence 356999999999999999999999999999999999999999999999999999999999998853 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
+||++.+++.+|+.+|+..... + ..........++.++++.
T Consensus 119 v~q~~~~~~~~tv~e~l~~~~~---------------~------------------------~~~~~~~~~~~~~~ll~~ 159 (340)
T PRK13536 119 VPQFDNLDLEFTVRENLLVFGR---------------Y------------------------FGMSTREIEAVIPSLLEF 159 (340)
T ss_pred EeCCccCCCCCcHHHHHHHHHH---------------H------------------------cCCCHHHHHHHHHHHHHH
Confidence 9999998889999998752100 0 000111233456678888
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~ 322 (554)
+|+. +..++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|++ .|.|||++||+++++.++
T Consensus 160 ~~L~-~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~ 238 (340)
T PRK13536 160 ARLE-SKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERL 238 (340)
T ss_pred cCCc-hhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 9986 457889999999999999999999999999999999999999999999988754 589999999999999999
Q ss_pred cceEEEeeCCeeeeccCChhHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||+|++|++|++ .+.|+.+++
T Consensus 239 ~d~i~il~~G~i-~~~g~~~~l 259 (340)
T PRK13536 239 CDRLCVLEAGRK-IAEGRPHAL 259 (340)
T ss_pred CCEEEEEECCEE-EEEcCHHHH
Confidence 999999999987 466766544
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-45 Score=355.03 Aligned_cols=203 Identities=29% Similarity=0.486 Sum_probs=173.7
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEEec
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v~Q 168 (554)
|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|++|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 578999999998899999999999999999999999999999999999999999999998743 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++..||.+|+..... . ..........++.++++.+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~---------------~------------------------~~~~~~~~~~~~~~~l~~~~l 121 (220)
T cd03265 81 DLSVDDELTGWENLYIHAR---------------L------------------------YGVPGAERRERIDELLDFVGL 121 (220)
T ss_pred CccccccCcHHHHHHHHHH---------------H------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 9988888899998753210 0 000112234567888999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d 324 (554)
. ...++++.+|||||||||+||+||+.+|++|||||||++||+.+++.+.++|++ .+.|||+||||++++..+||
T Consensus 122 ~-~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d 200 (220)
T cd03265 122 L-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCD 200 (220)
T ss_pred H-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 456889999999999999999999999999999999999999999999887743 48899999999999999999
Q ss_pred eEEEeeCCeeeeccCCh
Q 008771 325 KIVETEMGVSRTYEGNY 341 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~ 341 (554)
+|++|++|++. ..|+.
T Consensus 201 ~i~~l~~G~i~-~~~~~ 216 (220)
T cd03265 201 RVAIIDHGRII-AEGTP 216 (220)
T ss_pred EEEEEeCCEEE-EeCCh
Confidence 99999999975 33443
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-45 Score=371.67 Aligned_cols=208 Identities=28% Similarity=0.434 Sum_probs=177.3
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v 166 (554)
.+|+++|++++|+++.+|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.+ ..|||+
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 82 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVV 82 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEE
Confidence 45899999999998899999999999999999999999999999999999999999999998743 359999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
||++.+++..||.+|+..... . ..........++.++++.+
T Consensus 83 ~q~~~~~~~~tv~e~l~~~~~---------------~------------------------~~~~~~~~~~~~~~ll~~~ 123 (303)
T TIGR01288 83 PQFDNLDPEFTVRENLLVFGR---------------Y------------------------FGMSTREIEAVIPSLLEFA 123 (303)
T ss_pred eccccCCcCCcHHHHHHHHHH---------------H------------------------cCCCHHHHHHHHHHHHHHC
Confidence 999988888999999752100 0 0001112234566788888
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhc
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~ 323 (554)
|+. ...++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.+.|++ .|.|||+||||++++..+|
T Consensus 124 ~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~ 202 (303)
T TIGR01288 124 RLE-SKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLC 202 (303)
T ss_pred CCh-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC
Confidence 986 456888999999999999999999999999999999999999999999988754 4899999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|+|++|++|++ .+.|+.++.
T Consensus 203 d~i~~l~~G~i-~~~g~~~~~ 222 (303)
T TIGR01288 203 DRLCVLESGRK-IAEGRPHAL 222 (303)
T ss_pred CEEEEEECCEE-EEEcCHHHH
Confidence 99999999997 456765543
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=377.60 Aligned_cols=212 Identities=26% Similarity=0.399 Sum_probs=183.1
Q ss_pred CCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEE
Q 008771 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAF 165 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~ 165 (554)
..++|+++|++++|++.++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.. ..|||
T Consensus 11 ~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 11 LSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred CCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4466999999999998899999999999999999999999999999999999999999999999853 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
+||++.+++.+||.+|+..++.. .........+++.++++.
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~---------------------------------------~~~~~~~~~~~~~~~l~~ 131 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRM---------------------------------------QKTPAAEITPRVMEALRM 131 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhh---------------------------------------cCCCHHHHHHHHHHHHHH
Confidence 99999999999999998643210 001122335567888999
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~ 321 (554)
+||. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +.|.|+|+||||++++..
T Consensus 132 ~~l~-~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~ 210 (375)
T PRK09452 132 VQLE-EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALT 210 (375)
T ss_pred cCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 9996 57799999999999999999999999999999999999999999998888764 358999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+||+|++|++|++. ..|...++..
T Consensus 211 laDri~vl~~G~i~-~~g~~~~i~~ 234 (375)
T PRK09452 211 MSDRIVVMRDGRIE-QDGTPREIYE 234 (375)
T ss_pred hCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999985 4566655443
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=377.23 Aligned_cols=208 Identities=26% Similarity=0.419 Sum_probs=179.2
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (554)
.|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|++|
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 4899999999998889999999999999999999999999999999999999999999998743 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++.+||.+|+...... ......+...++.++++.+||
T Consensus 83 ~~~l~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~lgL 123 (369)
T PRK11000 83 SYALYPHLSVAENMSFGLKL---------------------------------------AGAKKEEINQRVNQVAEVLQL 123 (369)
T ss_pred CcccCCCCCHHHHHHhHHhh---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99998999999998643210 001112334567888999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d 324 (554)
. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|+|+||||++++..+||
T Consensus 124 ~-~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d 202 (369)
T PRK11000 124 A-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD 202 (369)
T ss_pred h-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCC
Confidence 6 567899999999999999999999999999999999999999999988877643 48999999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHHH
Q 008771 325 KIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+|++|++|++. ..|+..++.
T Consensus 203 ~i~vl~~G~i~-~~g~~~~i~ 222 (369)
T PRK11000 203 KIVVLDAGRVA-QVGKPLELY 222 (369)
T ss_pred EEEEEECCEEE-EEcCHHHHH
Confidence 99999999974 456665543
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=375.39 Aligned_cols=209 Identities=25% Similarity=0.412 Sum_probs=181.6
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCc--eeEEEcCCC--------ceEEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS--GNVIKAKSN--------MKIAFL 166 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~--G~I~~~~~~--------~~i~~v 166 (554)
.|+++||+++|++..+|+|+||+|.+||+++|+||||||||||+++|+|+++|++ |+|.++|.+ ..|+||
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~v 84 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALL 84 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEE
Confidence 3899999999998889999999999999999999999999999999999999999 999998753 259999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
||++.+++.+||.+|+..++.. ..........++.++++.+
T Consensus 85 fQ~~~l~p~~tv~enl~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~~~ 125 (362)
T TIGR03258 85 FQNYALFPHLKVEDNVAFGLRA---------------------------------------QKMPKADIAERVADALKLV 125 (362)
T ss_pred ECCcccCCCCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHhc
Confidence 9999999999999998643210 0112223456788899999
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cC-CCeEEEEecCHHHHHh
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQ-DVPMVIISHDRAFLDQ 321 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~-g~tvIiisHd~~~l~~ 321 (554)
||. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +. |.|+|+||||++++..
T Consensus 126 gL~-~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~ 204 (362)
T TIGR03258 126 GLG-DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALT 204 (362)
T ss_pred CCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence 996 56799999999999999999999999999999999999999999999888764 23 7899999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+||+|++|++|++. ..|+..++..
T Consensus 205 l~dri~vl~~G~i~-~~g~~~~~~~ 228 (362)
T TIGR03258 205 LADKAGIMKDGRLA-AHGEPQALYD 228 (362)
T ss_pred hCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999984 5577665543
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=375.36 Aligned_cols=212 Identities=24% Similarity=0.407 Sum_probs=182.3
Q ss_pred CCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc--------eEEE
Q 008771 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAF 165 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~--------~i~~ 165 (554)
..++|+++|++++|++..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|... .|||
T Consensus 16 ~~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 16 LTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CCceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 34579999999999988899999999999999999999999999999999999999999999988532 5999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
+||++.+++.+||.||+..++.. ......+..+++.++++.
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~~ 136 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQ---------------------------------------DKLPKAEIASRVNEMLGL 136 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHH
Confidence 99999999999999998643210 001122345678889999
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIiisHd~~~l~~ 321 (554)
+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..++.+.+.| ++.|.|+|+||||++++..
T Consensus 137 l~L~-~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~ 215 (377)
T PRK11607 137 VHMQ-EFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMT 215 (377)
T ss_pred cCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH
Confidence 9996 5678999999999999999999999999999999999999999998876544 4568999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+||+|++|++|++. ..|...++..
T Consensus 216 laDri~vl~~G~i~-~~g~~~~~~~ 239 (377)
T PRK11607 216 MAGRIAIMNRGKFV-QIGEPEEIYE 239 (377)
T ss_pred hCCEEEEEeCCEEE-EEcCHHHHHh
Confidence 99999999999985 4566655443
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=362.27 Aligned_cols=211 Identities=21% Similarity=0.317 Sum_probs=178.0
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------c
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------~ 161 (554)
+.+|+++||+++|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred cceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 356999999999998899999999999999999999999999999999999999999999998742 2
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
.|+|++|++.+++..||.+|+...+... ..........++.+
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~--------------------------------------~~~~~~~~~~~~~~ 126 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREH--------------------------------------TQLPAPLLHSTVMM 126 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHc--------------------------------------cCCCHHHHHHHHHH
Confidence 4999999998888889999985321100 00001112345677
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~ 317 (554)
+++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||++
T Consensus 127 ~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~ 205 (269)
T PRK11831 127 KLEAVGLR-GAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP 205 (269)
T ss_pred HHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 88899996 456888999999999999999999999999999999999999999998887753 3789999999999
Q ss_pred HHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
++..+||+|++|++|++. +.|+.+++.
T Consensus 206 ~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 232 (269)
T PRK11831 206 EVLSIADHAYIVADKKIV-AHGSAQALQ 232 (269)
T ss_pred HHHHhhCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999999874 567665543
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=373.42 Aligned_cols=213 Identities=29% Similarity=0.436 Sum_probs=181.4
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (554)
+|+++|++++|++..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..|+|+||
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 4899999999998899999999999999999999999999999999999999999999998853 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++.+||.+|+....... . ........+..+++.++++.+||
T Consensus 82 ~~~l~p~~tv~eni~~~~~~~--------------~---------------------~~~~~~~~~~~~~~~~~l~~~~L 126 (353)
T PRK10851 82 HYALFRHMTVFDNIAFGLTVL--------------P---------------------RRERPNAAAIKAKVTQLLEMVQL 126 (353)
T ss_pred CcccCCCCcHHHHHHhhhhhc--------------c---------------------cccCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999986432100 0 00001122345678889999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d 324 (554)
+ +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+ +.+.|+|+||||++++..+||
T Consensus 127 ~-~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~D 205 (353)
T PRK10851 127 A-HLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVAD 205 (353)
T ss_pred c-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 56789999999999999999999999999999999999999999988887764 348999999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHHHH
Q 008771 325 KIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+|++|++|++. ..|+..++..
T Consensus 206 ri~vl~~G~i~-~~g~~~~i~~ 226 (353)
T PRK10851 206 RVVVMSQGNIE-QAGTPDQVWR 226 (353)
T ss_pred EEEEEECCEEE-EEcCHHHHHh
Confidence 99999999984 5576665543
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=350.20 Aligned_cols=199 Identities=30% Similarity=0.463 Sum_probs=171.6
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEecc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (554)
|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 478999999998899999999999999999999999999999999999999999999998743 259999999
Q ss_pred cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
+.+++..|+.+|+...... .....+...+++.++++.+|+.
T Consensus 81 ~~~~~~~tv~~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~~l~ 121 (213)
T cd03301 81 YALYPHMTVYDNIAFGLKL---------------------------------------RKVPKDEIDERVREVAELLQIE 121 (213)
T ss_pred hhhccCCCHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcCCH
Confidence 9887788999997532100 0001122345677788899986
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcce
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~ 325 (554)
...++++.+||||||||++|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||+||||++++..+||+
T Consensus 122 -~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~ 200 (213)
T cd03301 122 -HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADR 200 (213)
T ss_pred -HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 456889999999999999999999999999999999999999999999888753 489999999999999999999
Q ss_pred EEEeeCCeeee
Q 008771 326 IVETEMGVSRT 336 (554)
Q Consensus 326 i~~l~~g~~~~ 336 (554)
|++|++|++..
T Consensus 201 i~~l~~g~~~~ 211 (213)
T cd03301 201 IAVMNDGQIQQ 211 (213)
T ss_pred EEEEECCEEEe
Confidence 99999998753
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=366.33 Aligned_cols=207 Identities=25% Similarity=0.487 Sum_probs=179.0
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEEe
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS 167 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v~ 167 (554)
.++++|++++|+++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ ..+||+|
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 3899999999998899999999999999999999999999999999999999999999998853 2599999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
|++.+++..|+.||+..... + ..........++.++++.+|
T Consensus 82 q~~~l~~~~tv~e~l~~~~~---------------~------------------------~~~~~~~~~~~~~~~l~~~g 122 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAG---------------I------------------------YGMKGQLLKQRVEEMIELVG 122 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHH---------------H------------------------cCCCHHHHHHHHHHHHHHCC
Confidence 99998888999999752100 0 00111223456788899999
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcce
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~ 325 (554)
+.. ..++++..|||||||||+||+||+.+|++|||||||+|||+.+++++.+.+++ .+.|||++||+++++.++|||
T Consensus 123 l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~ 201 (301)
T TIGR03522 123 LRP-EQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDR 201 (301)
T ss_pred Cch-HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCE
Confidence 974 56899999999999999999999999999999999999999999999988754 378999999999999999999
Q ss_pred EEEeeCCeeeeccCChhHH
Q 008771 326 IVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 326 i~~l~~g~~~~~~G~~~~~ 344 (554)
|++|++|++. +.|+.+++
T Consensus 202 i~~l~~G~i~-~~g~~~~~ 219 (301)
T TIGR03522 202 VIIINKGKIV-ADKKLDEL 219 (301)
T ss_pred EEEEECCEEE-EeCCHHHH
Confidence 9999999984 67877654
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=355.80 Aligned_cols=211 Identities=28% Similarity=0.443 Sum_probs=175.8
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (554)
.|+++||+++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|++|
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 4899999999998899999999999999999999999999999999999999999999998743 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++..||.+|+....... ... .........+++.++++.+|+
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~---------------~~~--------------------~~~~~~~~~~~~~~~l~~~~l 126 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVK---------------PRS--------------------ERPPEAEIRAKVHELLKLVQL 126 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhc---------------ccc--------------------ccCCHHHHHHHHHHHHHHcCC
Confidence 998877889999985321100 000 000011223456778888998
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d 324 (554)
. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.+++.+.++|++ .|.|||+||||++++..+||
T Consensus 127 ~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d 205 (239)
T cd03296 127 D-WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVAD 205 (239)
T ss_pred h-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 6 456888999999999999999999999999999999999999999999888753 37899999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHH
Q 008771 325 KIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~ 344 (554)
+|++|++|++. +.|+.+++
T Consensus 206 ~i~~l~~G~i~-~~~~~~~~ 224 (239)
T cd03296 206 RVVVMNKGRIE-QVGTPDEV 224 (239)
T ss_pred EEEEEECCeEE-EecCHHHH
Confidence 99999999874 55655443
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=352.20 Aligned_cols=195 Identities=30% Similarity=0.492 Sum_probs=167.1
Q ss_pred EEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------
Q 008771 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (554)
Q Consensus 98 i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------- 160 (554)
|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 478999999976 789999999999999999999999999999999999999999999998732
Q ss_pred -ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 161 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
..++|++|++.+++..||.+|+...... ........++++
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~ 121 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLL---------------------------------------AGVPKKERRERA 121 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhh---------------------------------------cCCCHHHHHHHH
Confidence 2599999999888888999997532100 000111234567
Q ss_pred HHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 008771 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (554)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd 315 (554)
.++++.+|+.. ..++.+.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .+.|||+||||
T Consensus 122 ~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 200 (218)
T cd03255 122 EELLERVGLGD-RLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD 200 (218)
T ss_pred HHHHHHcCCch-hhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 78899999963 45888999999999999999999999999999999999999999999888753 47899999999
Q ss_pred HHHHHhhcceEEEeeCCe
Q 008771 316 RAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~ 333 (554)
++++. +||+|++|++|+
T Consensus 201 ~~~~~-~~d~v~~l~~G~ 217 (218)
T cd03255 201 PELAE-YADRIIELRDGK 217 (218)
T ss_pred HHHHh-hhcEEEEeeCCc
Confidence 99997 999999999985
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=350.79 Aligned_cols=198 Identities=32% Similarity=0.430 Sum_probs=169.9
Q ss_pred EEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----ceEEEEec
Q 008771 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQ 168 (554)
Q Consensus 98 i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----~~i~~v~Q 168 (554)
|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 478999999987 789999999999999999999999999999999999999999999998753 36999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++..|+.+|+...... .....+....++.++++.+|+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~~l 121 (220)
T cd03293 81 QDALLPWLTVLDNVALGLEL---------------------------------------QGVPKAEARERAEELLELVGL 121 (220)
T ss_pred ccccccCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99887778999987532100 000111224567788899999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d 324 (554)
. ...++.+.+||||||||++|||||+.+|++|||||||++||+.++..+.+++++ .+.|||+||||++++..+||
T Consensus 122 ~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 200 (220)
T cd03293 122 S-GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLAD 200 (220)
T ss_pred h-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCC
Confidence 6 456888999999999999999999999999999999999999999999888753 47899999999999999999
Q ss_pred eEEEee--CCeee
Q 008771 325 KIVETE--MGVSR 335 (554)
Q Consensus 325 ~i~~l~--~g~~~ 335 (554)
+|++|+ +|++.
T Consensus 201 ~i~~l~~~~G~i~ 213 (220)
T cd03293 201 RVVVLSARPGRIV 213 (220)
T ss_pred EEEEEECCCCEEE
Confidence 999999 68864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=350.32 Aligned_cols=197 Identities=29% Similarity=0.505 Sum_probs=169.2
Q ss_pred cEEEEeEEEEe-CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------ce
Q 008771 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MK 162 (554)
Q Consensus 97 ~i~~~~ls~~y-~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------~~ 162 (554)
+|+++|++++| +++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 37899999999 46789999999999999999999999999999999999999999999998742 25
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
++|++|++.+++..|+.+|+...... ........+.++.++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~ 121 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEV---------------------------------------RGKKEREIQRRVGAA 121 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHH
Confidence 89999999888888999997532100 000111234567788
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l 319 (554)
++.+|+. ...++.+.+|||||+|||+|||||+.+|++|||||||++||+.++.++.+.+++ .+.|||+||||++++
T Consensus 122 l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~ 200 (214)
T TIGR02673 122 LRQVGLE-HKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLV 200 (214)
T ss_pred HHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 8999986 456888999999999999999999999999999999999999999999888754 589999999999999
Q ss_pred HhhcceEEEeeCCe
Q 008771 320 DQLCTKIVETEMGV 333 (554)
Q Consensus 320 ~~~~d~i~~l~~g~ 333 (554)
..+||+|++|++|+
T Consensus 201 ~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 201 DRVAHRVIILDDGR 214 (214)
T ss_pred HHhcCEEEEecCCC
Confidence 99999999999873
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=349.59 Aligned_cols=192 Identities=31% Similarity=0.549 Sum_probs=165.9
Q ss_pred EEEeEEEEeCC-eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-------eEEEEeccc
Q 008771 99 KLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------KIAFLSQEF 170 (554)
Q Consensus 99 ~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-------~i~~v~Q~~ 170 (554)
+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|+|++|++
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 36899999987 7899999999999999999999999999999999999999999999988542 599999997
Q ss_pred cc-ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 171 EV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 171 ~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
.. ++..|+.||+...... .. ....++.++++.+|+.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~-----------------------------------------~~--~~~~~~~~~l~~~~l~ 117 (205)
T cd03226 81 DYQLFTDSVREELLLGLKE-----------------------------------------LD--AGNEQAETVLKDLDLY 117 (205)
T ss_pred hhhhhhccHHHHHhhhhhh-----------------------------------------cC--ccHHHHHHHHHHcCCc
Confidence 43 3567999987532100 00 1124567788999996
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceE
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i 326 (554)
+..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|+|++|||++++..+||+|
T Consensus 118 -~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i 196 (205)
T cd03226 118 -ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRV 196 (205)
T ss_pred -hhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE
Confidence 456889999999999999999999999999999999999999999999888753 4889999999999999999999
Q ss_pred EEeeCCee
Q 008771 327 VETEMGVS 334 (554)
Q Consensus 327 ~~l~~g~~ 334 (554)
++|++|++
T Consensus 197 ~~l~~G~i 204 (205)
T cd03226 197 LLLANGAI 204 (205)
T ss_pred EEEECCEE
Confidence 99999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-45 Score=345.49 Aligned_cols=223 Identities=29% Similarity=0.402 Sum_probs=188.3
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------eEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-----------~i~ 164 (554)
+++++++|+++||+-.+++||||+|++||+++||||||||||||+++|+|+++|++|+|.++|.++ .|+
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 468999999999999999999999999999999999999999999999999999999999998753 589
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
..||.+.+|+++||.||++.+...... ....+.. ........+..+++.++|+
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~-------~~~~l~~--------------------~~~~~~e~~~~e~A~~~Le 135 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLG-------LSGLLGR--------------------PRARKEEREARERARELLE 135 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhh-------hhhhhcc--------------------ccchhhHHHHHHHHHHHHH
Confidence 999999999999999999765321100 0000000 0000012345678899999
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---c-CCCeEEEEecCHHHHH
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---K-QDVPMVIISHDRAFLD 320 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~-~g~tvIiisHd~~~l~ 320 (554)
.+||. +..+++..+||+|||+|+.|||||+.+|++||||||.+||.+.....+.+.++ + .|.||++|.||+.++.
T Consensus 136 ~vgL~-~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm 214 (250)
T COG0411 136 FVGLG-ELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVM 214 (250)
T ss_pred HcCCc-hhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHh
Confidence 99997 57799999999999999999999999999999999999999998888887764 3 5799999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
.+||||++|+.|++ ++.|++++....
T Consensus 215 ~l~dri~Vl~~G~~-IAeG~P~eV~~d 240 (250)
T COG0411 215 GLADRIVVLNYGEV-IAEGTPEEVRNN 240 (250)
T ss_pred hhccEEEeccCCcC-cccCCHHHHhcC
Confidence 99999999999986 789998876553
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=371.95 Aligned_cols=207 Identities=29% Similarity=0.486 Sum_probs=176.7
Q ss_pred cEEEEeEEEEeC----CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------------
Q 008771 97 GVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (554)
Q Consensus 97 ~i~~~~ls~~y~----~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------ 160 (554)
+|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 489999999997 4679999999999999999999999999999999999999999999998742
Q ss_pred -ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 161 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
..|+|+||++.+++..||.+|+...... ..........++
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~~ 121 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLEL---------------------------------------AGTPKAEIKARV 121 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHH
Confidence 2599999999988889999998532100 001112234567
Q ss_pred HHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 008771 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (554)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd 315 (554)
.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||
T Consensus 122 ~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~ 200 (343)
T PRK11153 122 TELLELVGLS-DKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHE 200 (343)
T ss_pred HHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 7889999996 467889999999999999999999999999999999999999999999888753 48999999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
++++.++||+|++|++|++. +.|...++
T Consensus 201 ~~~i~~~~d~v~~l~~G~i~-~~g~~~~~ 228 (343)
T PRK11153 201 MDVVKRICDRVAVIDAGRLV-EQGTVSEV 228 (343)
T ss_pred HHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 99999999999999999974 55665544
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-44 Score=347.43 Aligned_cols=198 Identities=28% Similarity=0.524 Sum_probs=171.3
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc------eEEEEecccc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------KIAFLSQEFE 171 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------~i~~v~Q~~~ 171 (554)
|+++|+++.|+++.+|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++.
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~ 80 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG 80 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCc
Confidence 4789999999988899999999999999999999999999999999999999999999998643 5999999998
Q ss_pred cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcc
Q 008771 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (554)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (554)
+++..|+.+|+..... . .........+.+.++++.+|+. .
T Consensus 81 ~~~~~tv~e~l~~~~~---------------~------------------------~~~~~~~~~~~~~~~l~~~~l~-~ 120 (210)
T cd03269 81 LYPKMKVIDQLVYLAQ---------------L------------------------KGLKKEEARRRIDEWLERLELS-E 120 (210)
T ss_pred CCcCCcHHHHHHHHHH---------------H------------------------cCCChHHHHHHHHHHHHHcCCh-H
Confidence 8888899998753110 0 0001122345677888999986 4
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceEEE
Q 008771 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVE 328 (554)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i~~ 328 (554)
..++++.+|||||||||+||+||+.+|++|||||||++||+.++.++.+.+++ .+.|||+||||++++.++||++++
T Consensus 121 ~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~ 200 (210)
T cd03269 121 YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLL 200 (210)
T ss_pred HHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEE
Confidence 56788999999999999999999999999999999999999999999888753 478999999999999999999999
Q ss_pred eeCCeee
Q 008771 329 TEMGVSR 335 (554)
Q Consensus 329 l~~g~~~ 335 (554)
|++|++.
T Consensus 201 l~~g~i~ 207 (210)
T cd03269 201 LNKGRAV 207 (210)
T ss_pred EeCCEEE
Confidence 9999874
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-44 Score=379.13 Aligned_cols=243 Identities=24% Similarity=0.373 Sum_probs=200.9
Q ss_pred hhhHHHHhccCcchhhhhhhccccCCCCCC----------CCCccEEEEeEEEEeCC-----------eeeEEceeEEEE
Q 008771 63 QSDVESLFSSSADEFENKKYSNKQSNTGAS----------SISSGVKLENISKSYKG-----------VTVLKDVTWEVK 121 (554)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~~~~ls~~y~~-----------~~~l~~isl~i~ 121 (554)
.+..+++++.|.++|+.......+...... ...+.++++||++.|.. ..+++||||+|.
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~ 315 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLR 315 (539)
T ss_pred ecCHHHHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEec
Confidence 357788999999999888755544321110 14578999999999962 358999999999
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------------ceEEEEeccc--ccccCccHHHHHHHhhH
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIAFLSQEF--EVSMSRTVREEFMSAFK 187 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------~~i~~v~Q~~--~~~~~~tv~e~~~~~~~ 187 (554)
+||++||||+||||||||.|+|+|+++|++|+|.++|.+ .++-++||+| .+.+.+||.+++...+.
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~ 395 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLR 395 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHh
Confidence 999999999999999999999999999999999998854 2588999998 46688899988764421
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHH
Q 008771 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267 (554)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqR 267 (554)
-. ......+..+++.++|+.+||+...++|+|++||||||||
T Consensus 396 ~~--------------------------------------~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQR 437 (539)
T COG1123 396 IH--------------------------------------GGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQR 437 (539)
T ss_pred hh--------------------------------------cccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHH
Confidence 00 0011233456799999999999888999999999999999
Q ss_pred HHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhH
Q 008771 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 268 v~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~ 343 (554)
|+|||||+.+|++||+|||||+||+.....+.++|+ +.|.|+||||||+.++.++||||++|+.|+++.. |+-++
T Consensus 438 vaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~-G~~~~ 516 (539)
T COG1123 438 VAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEE-GPTEK 516 (539)
T ss_pred HHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEe-CCHHH
Confidence 999999999999999999999999999888887764 4699999999999999999999999999998654 45444
Q ss_pred H
Q 008771 344 Y 344 (554)
Q Consensus 344 ~ 344 (554)
.
T Consensus 517 v 517 (539)
T COG1123 517 V 517 (539)
T ss_pred H
Confidence 3
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=350.08 Aligned_cols=199 Identities=30% Similarity=0.479 Sum_probs=171.8
Q ss_pred cEEEEeEEEEeCCe----eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceE
Q 008771 97 GVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKI 163 (554)
Q Consensus 97 ~i~~~~ls~~y~~~----~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i 163 (554)
+|+++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 37899999999876 79999999999999999999999999999999999999999999998743 259
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+|++|++.+++..||.+|+...... ..........++.+++
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l 121 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGL---------------------------------------YGLKGDELTARLEELA 121 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHH
Confidence 9999999888888999997532100 0001122345677888
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~ 320 (554)
+.+|+. +..++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||++++.
T Consensus 122 ~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~ 200 (218)
T cd03266 122 DRLGME-ELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVE 200 (218)
T ss_pred HHcCCH-HHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 999986 456888999999999999999999999999999999999999999999888753 4889999999999999
Q ss_pred hhcceEEEeeCCeee
Q 008771 321 QLCTKIVETEMGVSR 335 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~ 335 (554)
.+||+|++|++|++.
T Consensus 201 ~~~d~i~~l~~G~i~ 215 (218)
T cd03266 201 RLCDRVVVLHRGRVV 215 (218)
T ss_pred HhcCEEEEEECCEEe
Confidence 999999999999874
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-44 Score=356.37 Aligned_cols=211 Identities=24% Similarity=0.417 Sum_probs=179.6
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------- 160 (554)
..|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (257)
T PRK10619 4 NKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVAD 83 (257)
T ss_pred ccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccccc
Confidence 45899999999998899999999999999999999999999999999999999999999998742
Q ss_pred --------ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCc
Q 008771 161 --------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (554)
Q Consensus 161 --------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (554)
..|+|+||++.+++..|+.+|+...... . .....
T Consensus 84 ~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~--------------~------------------------~~~~~ 125 (257)
T PRK10619 84 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ--------------V------------------------LGLSK 125 (257)
T ss_pred chHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHH--------------h------------------------CCCCH
Confidence 2589999999888888999998532100 0 00011
Q ss_pred ccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeE
Q 008771 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPM 309 (554)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tv 309 (554)
+..+.++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|+ +.|.||
T Consensus 126 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~ti 205 (257)
T PRK10619 126 QEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 205 (257)
T ss_pred HHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 22345677889999997544478899999999999999999999999999999999999999999988764 358999
Q ss_pred EEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 310 IiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|+||||++++..+||+|++|++|+++ +.|+++++.
T Consensus 206 iivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 240 (257)
T PRK10619 206 VVVTHEMGFARHVSSHVIFLHQGKIE-EEGAPEQLF 240 (257)
T ss_pred EEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHhh
Confidence 99999999999999999999999974 567776654
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=357.52 Aligned_cols=198 Identities=24% Similarity=0.400 Sum_probs=172.0
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----ceEEEEeccc
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEF 170 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----~~i~~v~Q~~ 170 (554)
+.|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|++|++
T Consensus 11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~ 90 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDA 90 (257)
T ss_pred CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCc
Confidence 55999999999998889999999999999999999999999999999999999999999997743 3599999999
Q ss_pred ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc
Q 008771 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (554)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (554)
.+++..||.+|+...+. ...+.++.++++.+|+.
T Consensus 91 ~l~~~~tv~enl~~~~~---------------------------------------------~~~~~~~~~~l~~~gl~- 124 (257)
T PRK11247 91 RLLPWKKVIDNVGLGLK---------------------------------------------GQWRDAALQALAAVGLA- 124 (257)
T ss_pred cCCCCCcHHHHHHhccc---------------------------------------------chHHHHHHHHHHHcCCh-
Confidence 88777899999753210 00123456778888986
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceE
Q 008771 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i 326 (554)
...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+||||++++..+||+|
T Consensus 125 ~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i 204 (257)
T PRK11247 125 DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRV 204 (257)
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 456888999999999999999999999999999999999999999998887743 4899999999999999999999
Q ss_pred EEeeCCeeeeccCC
Q 008771 327 VETEMGVSRTYEGN 340 (554)
Q Consensus 327 ~~l~~g~~~~~~G~ 340 (554)
++|++|++. +.|+
T Consensus 205 ~~l~~G~i~-~~~~ 217 (257)
T PRK11247 205 LLIEEGKIG-LDLT 217 (257)
T ss_pred EEEECCEEE-eecc
Confidence 999999874 3443
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=353.53 Aligned_cols=216 Identities=28% Similarity=0.432 Sum_probs=176.2
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEEEE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~~v 166 (554)
|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 478999999998889999999999999999999999999999999999999999999998742 249999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
||++.+++..||.+|+....... . .. . + . .............++.++++.+
T Consensus 81 ~q~~~l~~~~tv~~~l~~~~~~~---------------~-~~--~-~---~-------~~~~~~~~~~~~~~~~~~l~~~ 131 (236)
T cd03219 81 FQIPRLFPELTVLENVMVAAQAR---------------T-GS--G-L---L-------LARARREEREARERAEELLERV 131 (236)
T ss_pred ecccccccCCCHHHHHHHHHhhc---------------c-cc--c-c---c-------cccccccHHHHHHHHHHHHHHc
Confidence 99999888899999985431100 0 00 0 0 0 0000000112345677889999
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhc
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~ 323 (554)
|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||||++++..+|
T Consensus 132 ~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~ 210 (236)
T cd03219 132 GLA-DLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLA 210 (236)
T ss_pred Ccc-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC
Confidence 996 456889999999999999999999999999999999999999999999888753 5789999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|+|++|++|++. ..|+.+++
T Consensus 211 d~i~~l~~G~i~-~~~~~~~~ 230 (236)
T cd03219 211 DRVTVLDQGRVI-AEGTPDEV 230 (236)
T ss_pred CEEEEEeCCEEE-eecCHHHh
Confidence 999999999874 55665543
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-45 Score=337.12 Aligned_cols=203 Identities=20% Similarity=0.316 Sum_probs=166.3
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCc-----eeEEEcCCCc---------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS-----GNVIKAKSNM--------- 161 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~-----G~I~~~~~~~--------- 161 (554)
+.++++||++.|+++.+|+|||+.|++++++|||||||||||||||+++.+..... |+|.++|.++
T Consensus 6 ~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~ 85 (253)
T COG1117 6 PAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE 85 (253)
T ss_pred ceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence 45899999999999999999999999999999999999999999999999987764 9999998653
Q ss_pred ---eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 162 ---~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
+||+|||.|..|+ +|++||+..+.+-.-. .+ ..+++.
T Consensus 86 lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~--------------------------------------~~-~~ldei 125 (253)
T COG1117 86 LRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGI--------------------------------------KD-KELDEI 125 (253)
T ss_pred HHHHheeeccCCCCCC-chHHHHHHHhHHhhcc--------------------------------------ch-HHHHHH
Confidence 6999999999877 8999999765421000 00 112222
Q ss_pred HHHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+++.|....|- .+.+++....||||||||++|||||+.+|+|||||||||+|||.+...+++++.+ ...||||||
T Consensus 126 Ve~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVT 205 (253)
T COG1117 126 VESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVT 205 (253)
T ss_pred HHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEe
Confidence 22223222221 2445677789999999999999999999999999999999999988777777643 478999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeecc
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYE 338 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~ 338 (554)
|++.-+.+++|++.++..|.++.|.
T Consensus 206 HnmqQAaRvSD~taFf~~G~LvE~g 230 (253)
T COG1117 206 HNMQQAARVSDYTAFFYLGELVEFG 230 (253)
T ss_pred CCHHHHHHHhHhhhhhcccEEEEEc
Confidence 9999999999999999999997774
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-44 Score=364.87 Aligned_cols=210 Identities=22% Similarity=0.341 Sum_probs=175.8
Q ss_pred cEEEEeEEEEeCCe-----eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------
Q 008771 97 GVKLENISKSYKGV-----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~~-----~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------- 160 (554)
.|+++|++++|++. ++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 38999999999743 59999999999999999999999999999999999999999999986431
Q ss_pred -----------------------ceEEEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHH
Q 008771 161 -----------------------MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216 (554)
Q Consensus 161 -----------------------~~i~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (554)
..||||||++. .++..||.+|+......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~---------------------------- 133 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVS---------------------------- 133 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHH----------------------------
Confidence 14899999873 33557999998532100
Q ss_pred HHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHH
Q 008771 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE 296 (554)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~ 296 (554)
.........+++.++++.+||.....++++.+|||||||||+||+||+.+|++|||||||++||+.++.
T Consensus 134 -----------~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~ 202 (305)
T PRK13651 134 -----------MGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVK 202 (305)
T ss_pred -----------cCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Confidence 011222345678889999999756778999999999999999999999999999999999999999999
Q ss_pred HHHHHHc---cCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 297 WLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 297 ~l~~~l~---~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
.+.+.|+ +.|.|||+||||++++.++||||++|++|++ .+.|+..+...
T Consensus 203 ~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i-~~~g~~~~~~~ 254 (305)
T PRK13651 203 EILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKI-IKDGDTYDILS 254 (305)
T ss_pred HHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEE-EEECCHHHHhc
Confidence 9888774 3589999999999999999999999999997 46676655443
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-44 Score=367.31 Aligned_cols=213 Identities=21% Similarity=0.374 Sum_probs=179.1
Q ss_pred CccEEEEeEEEEeCC-------------eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-
Q 008771 95 SSGVKLENISKSYKG-------------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~-------------~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~- 160 (554)
+++|+++||+++|+. ..+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 467999999999952 469999999999999999999999999999999999999999999998753
Q ss_pred ------------ceEEEEeccc--ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Q 008771 161 ------------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK 226 (554)
Q Consensus 161 ------------~~i~~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (554)
..|+||+|++ .+++.+||.+|+....... .
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~--------------~---------------------- 129 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTY--------------H---------------------- 129 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHh--------------c----------------------
Confidence 2599999998 4667889999986421100 0
Q ss_pred HHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--
Q 008771 227 AQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-- 304 (554)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~-- 304 (554)
..+...+..+++.++++.+|+.....++++++|||||+|||+|||||+.+|++|||||||++||+.++..+.++|++
T Consensus 130 -~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~ 208 (331)
T PRK15079 130 -PKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQ 208 (331)
T ss_pred -cCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 00112234556778899999965667999999999999999999999999999999999999999999888887642
Q ss_pred --CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 305 --QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 305 --~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
.+.|+|+||||+.++.++||+|++|++|+++ ..|+.+++.
T Consensus 209 ~~~~~til~iTHdl~~~~~~~dri~vl~~G~iv-e~g~~~~i~ 250 (331)
T PRK15079 209 REMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV-ELGTYDEVY 250 (331)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 4899999999999999999999999999884 456665544
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=420.84 Aligned_cols=224 Identities=22% Similarity=0.274 Sum_probs=162.3
Q ss_pred eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC---ceeEEEcCCC-------ceEEEEecccccccCccHH
Q 008771 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSN-------MKIAFLSQEFEVSMSRTVR 179 (554)
Q Consensus 110 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~---~G~I~~~~~~-------~~i~~v~Q~~~~~~~~tv~ 179 (554)
+.+|+|+|+.|++||+++|+||||||||||||+|+|.++|+ +|+|.++|.+ ..++||+|+..+++.+||+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 45999999999999999999999999999999999999998 9999998853 3599999998888899999
Q ss_pred HHHHHhhHHH-----HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcc---
Q 008771 180 EEFMSAFKEE-----MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD--- 251 (554)
Q Consensus 180 e~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~--- 251 (554)
|++..+..-. .........-.. ......+. +.+..... ......+....++.+|+.+||++.
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek-~~~~~~~~--------~i~~~~~~-~~~~~~~~~~~~~~~L~~lGL~~~~~t 327 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREK-DAGIFPEA--------EVDLFMKA-TAMEGVKSSLITDYTLKILGLDICKDT 327 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHH-hccCCCch--------hhHHHHHH-hhhhcchhhHHHHHHHHHcCCccccCc
Confidence 9986432100 000000000000 00000000 00000000 000001122346778999999642
Q ss_pred -ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCH-HHHHhhcce
Q 008771 252 -DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR-AFLDQLCTK 325 (554)
Q Consensus 252 -~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~-~~l~~~~d~ 325 (554)
..+..+..|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|++ .|.|+|+++|++ ..+.+++|+
T Consensus 328 ~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~ 407 (1470)
T PLN03140 328 IVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDD 407 (1470)
T ss_pred eeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhhe
Confidence 23667789999999999999999999999999999999999999988887753 488999999996 578889999
Q ss_pred EEEeeCCeeeeccCChhHH
Q 008771 326 IVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 326 i~~l~~g~~~~~~G~~~~~ 344 (554)
|++|++|++ .|.|+.++.
T Consensus 408 vilL~~G~i-vy~G~~~~~ 425 (1470)
T PLN03140 408 IILLSEGQI-VYQGPRDHI 425 (1470)
T ss_pred EEEeeCceE-EEeCCHHHH
Confidence 999999987 466665443
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=354.32 Aligned_cols=209 Identities=26% Similarity=0.449 Sum_probs=176.7
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------------- 160 (554)
+|+++||+++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 5899999999998889999999999999999999999999999999999999999999987632
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..++|++|++.+++..|+.+|+...... . ..........+
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~--------------~------------------------~~~~~~~~~~~ 124 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVI--------------V------------------------KGEPKEEATAR 124 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHH--------------h------------------------cCCCHHHHHHH
Confidence 2589999999888888999998532100 0 00011123445
Q ss_pred HHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecC
Q 008771 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHD 315 (554)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd 315 (554)
+.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|+ +.|.|||+||||
T Consensus 125 ~~~~l~~~gl~-~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~ 203 (250)
T PRK11264 125 ARELLAKVGLA-GKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHE 203 (250)
T ss_pred HHHHHHHcCCc-chhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 67788889996 45688899999999999999999999999999999999999999999988764 358899999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
++++..+||+|++|++|++. +.|+.+++.
T Consensus 204 ~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 232 (250)
T PRK11264 204 MSFARDVADRAIFMDQGRIV-EQGPAKALF 232 (250)
T ss_pred HHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999874 567766543
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-44 Score=352.72 Aligned_cols=209 Identities=23% Similarity=0.416 Sum_probs=177.8
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------------ceEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIA 164 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------~~i~ 164 (554)
+|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 3789999999998889999999999999999999999999999999999999999999998743 1489
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|++|++.+++..||.+|+...... . .....+...+++.++++
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~--------------~------------------------~~~~~~~~~~~~~~~l~ 122 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLR--------------V------------------------RGASKEEAEKQARELLA 122 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHH--------------h------------------------cCCCHHHHHHHHHHHHH
Confidence 999999888888999998532100 0 00011223456778889
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~ 321 (554)
.+|+. ...++.+.+||||||||++|||||+.+|++|||||||++||+.++.++.++|+ +.+.|||+||||++++..
T Consensus 123 ~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 201 (240)
T PRK09493 123 KVGLA-ERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEK 201 (240)
T ss_pred HcCCh-HHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 99996 45688899999999999999999999999999999999999999999988874 348999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+||+|++|++|++. +.|++.++.
T Consensus 202 ~~d~i~~l~~G~i~-~~g~~~~~~ 224 (240)
T PRK09493 202 VASRLIFIDKGRIA-EDGDPQVLI 224 (240)
T ss_pred hCCEEEEEECCEEE-eeCCHHHHh
Confidence 99999999999974 567776654
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-44 Score=362.71 Aligned_cols=209 Identities=22% Similarity=0.327 Sum_probs=175.8
Q ss_pred EEEEeEEEEeCC-----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------
Q 008771 98 VKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------- 161 (554)
Q Consensus 98 i~~~~ls~~y~~-----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------- 161 (554)
|+++||+++|++ .++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 899999999974 4699999999999999999999999999999999999999999999988532
Q ss_pred ---eEEEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 162 ---KIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 162 ---~i~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
.|||+||++. .++..||.+|+...... ......+..+
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~ 123 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMN---------------------------------------FGVSEEDAKQ 123 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHH---------------------------------------cCCCHHHHHH
Confidence 4999999973 23456999988532100 0011122345
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 008771 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (554)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiis 313 (554)
++.++++.+||.....++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|++ .|.|||+||
T Consensus 124 ~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiit 203 (290)
T PRK13634 124 KAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVT 203 (290)
T ss_pred HHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 6788899999975567899999999999999999999999999999999999999999999887743 489999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||++++..+||||++|++|++ .+.|+..++..
T Consensus 204 Hd~~~~~~~~drv~~l~~G~i-~~~g~~~~~~~ 235 (290)
T PRK13634 204 HSMEDAARYADQIVVMHKGTV-FLQGTPREIFA 235 (290)
T ss_pred CCHHHHHHhCCEEEEEECCEE-EEECCHHHHhc
Confidence 999999999999999999997 46677666543
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-44 Score=355.77 Aligned_cols=199 Identities=24% Similarity=0.327 Sum_probs=171.1
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----eEEEEecccc
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----KIAFLSQEFE 171 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-----~i~~v~Q~~~ 171 (554)
+|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++.
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~ 80 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG 80 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc
Confidence 47999999999888899999999999999999999999999999999999999999999987542 5899999998
Q ss_pred cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcc
Q 008771 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (554)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (554)
+++..||.+|+...... . .........++.++++.+|+. .
T Consensus 81 ~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~gl~-~ 120 (255)
T PRK11248 81 LLPWRNVQDNVAFGLQL---------------A------------------------GVEKMQRLEIAHQMLKKVGLE-G 120 (255)
T ss_pred cCCCCcHHHHHHhHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCCh-h
Confidence 88888999997532100 0 001112345677889999996 4
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceEE
Q 008771 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIV 327 (554)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i~ 327 (554)
..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|++ .|.|||+||||++++..+||+|+
T Consensus 121 ~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~ 200 (255)
T PRK11248 121 AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELV 200 (255)
T ss_pred HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 56788999999999999999999999999999999999999999999988754 38899999999999999999999
Q ss_pred Eee--CCeee
Q 008771 328 ETE--MGVSR 335 (554)
Q Consensus 328 ~l~--~g~~~ 335 (554)
+|+ +|++.
T Consensus 201 ~l~~~~G~i~ 210 (255)
T PRK11248 201 LLSPGPGRVV 210 (255)
T ss_pred EEeCCCcEEE
Confidence 998 48764
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-44 Score=345.59 Aligned_cols=194 Identities=32% Similarity=0.477 Sum_probs=169.5
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc--------eEEEEecc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQE 169 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~--------~i~~v~Q~ 169 (554)
|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 4789999999888999999999999999999999999999999999999999999999988643 59999999
Q ss_pred cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
+.+++..||.+|+...... .. ..+.++.++++.+|+.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~-----------------------------------------~~--~~~~~~~~~l~~~~l~ 117 (208)
T cd03268 81 PGFYPNLTARENLRLLARL-----------------------------------------LG--IRKKRIDEVLDVVGLK 117 (208)
T ss_pred CccCccCcHHHHHHHHHHh-----------------------------------------cC--CcHHHHHHHHHHcCCH
Confidence 9888889999997532100 00 0134566778888885
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceE
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i 326 (554)
...++++.+|||||||||+||+||+.+|++|||||||++||+.+++.+.++|++ .+.|+|+||||++++..+||++
T Consensus 118 -~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v 196 (208)
T cd03268 118 -DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRI 196 (208)
T ss_pred -HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEE
Confidence 456788999999999999999999999999999999999999999999888753 5899999999999999999999
Q ss_pred EEeeCCeee
Q 008771 327 VETEMGVSR 335 (554)
Q Consensus 327 ~~l~~g~~~ 335 (554)
++|++|++.
T Consensus 197 ~~l~~g~i~ 205 (208)
T cd03268 197 GIINKGKLI 205 (208)
T ss_pred EEEECCEEE
Confidence 999999864
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-44 Score=348.06 Aligned_cols=204 Identities=28% Similarity=0.440 Sum_probs=172.7
Q ss_pred EEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------eEEEE
Q 008771 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFL 166 (554)
Q Consensus 98 i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------~i~~v 166 (554)
|+++||++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 578999999986 7899999999999999999999999999999999999999999999987542 48999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
+|++.+++..|+.+|+...... ..........++.++++.+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~ 121 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARL---------------------------------------KGLPKSEIKEEVELLLRVL 121 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHHc
Confidence 9999887789999987532100 0001112334577788889
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcc
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d 324 (554)
|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||++|||++++.++||
T Consensus 122 ~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d 200 (220)
T cd03263 122 GLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCD 200 (220)
T ss_pred CCH-HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcC
Confidence 986 456788999999999999999999999999999999999999999999988754 35899999999999999999
Q ss_pred eEEEeeCCeeeeccCChh
Q 008771 325 KIVETEMGVSRTYEGNYS 342 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~ 342 (554)
+|++|++|++. ..|+.+
T Consensus 201 ~i~~l~~g~i~-~~~~~~ 217 (220)
T cd03263 201 RIAIMSDGKLR-CIGSPQ 217 (220)
T ss_pred EEEEEECCEEE-ecCCHH
Confidence 99999999875 445443
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-44 Score=351.02 Aligned_cols=207 Identities=31% Similarity=0.522 Sum_probs=175.3
Q ss_pred cEEEEeEEEEeCCe----eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------------
Q 008771 97 GVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~~----~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------ 160 (554)
+|+++|++++|+++ ++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 37899999999876 89999999999999999999999999999999999999999999998743
Q ss_pred -ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 161 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
..|+|+||++.+++..|+.+|+...... . ..........+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~---------------~------------------------~~~~~~~~~~~ 121 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEI---------------A------------------------GVPKAEIEERV 121 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHH
Confidence 2499999999888889999997532100 0 00111223456
Q ss_pred HHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 008771 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (554)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd 315 (554)
.++++.+|+. ...++++.+|||||+|||+||+||+.+|++|||||||++||+.++..+.+++++ .|.|||+||||
T Consensus 122 ~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 200 (233)
T cd03258 122 LELLELVGLE-DKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE 200 (233)
T ss_pred HHHHHHCCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 7788999986 456888999999999999999999999999999999999999999999888753 38899999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
++++..+||++++|++|++. ..|+..++
T Consensus 201 ~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 228 (233)
T cd03258 201 MEVVKRICDRVAVMEKGEVV-EEGTVEEV 228 (233)
T ss_pred HHHHHHhCCEEEEEECCEEE-EecCHHHH
Confidence 99999999999999999984 45665543
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=350.23 Aligned_cols=206 Identities=28% Similarity=0.423 Sum_probs=174.9
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEEEE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~~v 166 (554)
|+++||+++|+++.+|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 478999999998899999999999999999999999999999999999999999999998742 249999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
+|++.+++..|+.+|+...... . .........++.++++.+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~ 121 (232)
T cd03218 81 PQEASIFRKLTVEENILAVLEI---------------R------------------------GLSKKEREEKLEELLEEF 121 (232)
T ss_pred cCCccccccCcHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHHHc
Confidence 9999888888999997532100 0 000112234567788889
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhc
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~~~ 323 (554)
|+. ...++.+.+||||||||++||+||+.+|++|||||||++||+.+++.+.++|+ +.+.|||++|||++++..+|
T Consensus 122 ~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~ 200 (232)
T cd03218 122 HIT-HLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSIT 200 (232)
T ss_pred CCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 986 45688899999999999999999999999999999999999999999888764 35889999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|+|++|++|++. +.|+.+++
T Consensus 201 d~i~~l~~G~i~-~~~~~~~~ 220 (232)
T cd03218 201 DRAYIIYEGKVL-AEGTPEEI 220 (232)
T ss_pred CEEEEEECCeEE-EEeCHHHh
Confidence 999999999874 55665543
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-44 Score=361.26 Aligned_cols=210 Identities=22% Similarity=0.297 Sum_probs=176.5
Q ss_pred cEEEEeEEEEeCC-----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------
Q 008771 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~-----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------- 161 (554)
+|+++|++|+|+. +.+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 4899999999963 2599999999999999999999999999999999999999999999988531
Q ss_pred ----eEEEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH
Q 008771 162 ----KIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (554)
Q Consensus 162 ----~i~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (554)
.||||+|++. .++..||.+|+...... ......+..
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~---------------------------------------~~~~~~~~~ 121 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQN---------------------------------------FGIPKEKAE 121 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHH---------------------------------------cCCCHHHHH
Confidence 4899999973 33456999988532100 001122345
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEe
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiis 313 (554)
.++.++++.+|+.....++++.+||||||||++||+||+.+|++|||||||++||+.++..|.+.|+ +.|.|||+||
T Consensus 122 ~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vt 201 (288)
T PRK13643 122 KIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVT 201 (288)
T ss_pred HHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 5678889999996556789999999999999999999999999999999999999999999988764 3589999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||++++..+||+|++|++|++ .+.|+.+++..
T Consensus 202 Hd~~~~~~~~dri~~l~~G~i-~~~g~~~~~~~ 233 (288)
T PRK13643 202 HLMDDVADYADYVYLLEKGHI-ISCGTPSDVFQ 233 (288)
T ss_pred cCHHHHHHhCCEEEEEECCEE-EEECCHHHHHc
Confidence 999999999999999999998 46788776654
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=344.88 Aligned_cols=197 Identities=29% Similarity=0.458 Sum_probs=169.9
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEEec
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v~Q 168 (554)
|+++|+++.|+++++|+|+||+|++| +++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 79 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecC
Confidence 57899999998889999999999999 999999999999999999999999999999998853 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++..||.+|+...... .....+...+++.++++.+|+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~~l 120 (211)
T cd03264 80 EFGVYPNFTVREFLDYIAWL---------------------------------------KGIPSKEVKARVDEVLELVNL 120 (211)
T ss_pred CCcccccCCHHHHHHHHHHH---------------------------------------hCCCHHHHHHHHHHHHHHCCC
Confidence 99888888999997532100 000111234567778888998
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceE
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i 326 (554)
. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||++++.++||++
T Consensus 121 ~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i 199 (211)
T cd03264 121 G-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQV 199 (211)
T ss_pred H-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEE
Confidence 6 456788999999999999999999999999999999999999999999998864 2689999999999999999999
Q ss_pred EEeeCCeee
Q 008771 327 VETEMGVSR 335 (554)
Q Consensus 327 ~~l~~g~~~ 335 (554)
++|++|++.
T Consensus 200 ~~l~~g~i~ 208 (211)
T cd03264 200 AVLNKGKLV 208 (211)
T ss_pred EEEECCEEE
Confidence 999999874
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=347.17 Aligned_cols=199 Identities=26% Similarity=0.447 Sum_probs=170.1
Q ss_pred cEEEEeEEEEe-CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------ce
Q 008771 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MK 162 (554)
Q Consensus 97 ~i~~~~ls~~y-~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------~~ 162 (554)
+|+++|+++.| +++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 37899999999 66789999999999999999999999999999999999999999999998742 25
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
++|++|++.+++..|+.+|+...... .....++...++.++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~ 121 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLII---------------------------------------AGASGDDIRRRVSAA 121 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHh---------------------------------------cCCCHHHHHHHHHHH
Confidence 89999999888889999998532100 000111233456778
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l 319 (554)
++.+|+. ...++.+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+ +.+.|+|+||||++++
T Consensus 122 l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 200 (222)
T PRK10908 122 LDKVGLL-DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLI 200 (222)
T ss_pred HHHcCCh-hhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 8889986 45688899999999999999999999999999999999999999988888765 3478999999999999
Q ss_pred HhhcceEEEeeCCeee
Q 008771 320 DQLCTKIVETEMGVSR 335 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~ 335 (554)
..+||+|++|++|++.
T Consensus 201 ~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 201 SRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHhCCEEEEEECCEEc
Confidence 9999999999999864
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-44 Score=353.77 Aligned_cols=215 Identities=27% Similarity=0.426 Sum_probs=176.4
Q ss_pred cEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------ce
Q 008771 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MK 162 (554)
Q Consensus 97 ~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------~~ 162 (554)
+|+++||+++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 378999999998 7789999999999999999999999999999999999999999999998743 24
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
++|+||++.+++..||.+|+.......... ..... .........++.++
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~--------------------~~~~~-----------~~~~~~~~~~~~~~ 129 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPT--------------------WRSLL-----------GRFSEEDKERALSA 129 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccc--------------------hhhhh-----------ccccHHHHHHHHHH
Confidence 899999998888899999985421100000 00000 00011224567788
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~ 318 (554)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||+++
T Consensus 130 l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~ 208 (243)
T TIGR02315 130 LERVGLA-DKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDL 208 (243)
T ss_pred HHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 8999986 456888999999999999999999999999999999999999999999887753 37899999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhHH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+.++||+|++|++|++. ..|+.+++
T Consensus 209 ~~~~~d~v~~l~~G~i~-~~~~~~~~ 233 (243)
T TIGR02315 209 AKKYADRIVGLKAGEIV-FDGAPSEL 233 (243)
T ss_pred HHHhcCeEEEEECCEEE-ecCCHHHh
Confidence 99999999999999974 56766553
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-44 Score=346.64 Aligned_cols=197 Identities=29% Similarity=0.500 Sum_probs=169.2
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc------------eEEE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------KIAF 165 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------------~i~~ 165 (554)
|+++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .|+|
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 4789999999988999999999999999999999999999999999999999999999987432 4899
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.+++..|+.+|+...... . .........+++.++++.
T Consensus 81 ~~q~~~~~~~~t~~e~l~~~~~~--------------~------------------------~~~~~~~~~~~~~~~l~~ 122 (213)
T cd03262 81 VFQQFNLFPHLTVLENITLAPIK--------------V------------------------KGMSKAEAEERALELLEK 122 (213)
T ss_pred EecccccCCCCcHHHHHHhHHHH--------------h------------------------cCCCHHHHHHHHHHHHHH
Confidence 99999888889999997532100 0 000111234456778888
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~ 322 (554)
+|+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.+++++.+.|++ .+.|||++|||++++.++
T Consensus 123 ~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~ 201 (213)
T cd03262 123 VGLA-DKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREV 201 (213)
T ss_pred cCCH-hHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 9986 456889999999999999999999999999999999999999999999888753 478999999999999999
Q ss_pred cceEEEeeCCe
Q 008771 323 CTKIVETEMGV 333 (554)
Q Consensus 323 ~d~i~~l~~g~ 333 (554)
||+|++|++|+
T Consensus 202 ~d~i~~l~~g~ 212 (213)
T cd03262 202 ADRVIFMDDGR 212 (213)
T ss_pred CCEEEEEeCCc
Confidence 99999999885
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=352.09 Aligned_cols=214 Identities=26% Similarity=0.425 Sum_probs=175.6
Q ss_pred EEEEeEEEEeCC-eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------ceE
Q 008771 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MKI 163 (554)
Q Consensus 98 i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------~~i 163 (554)
|+++||+++|++ +++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999987 789999999999999999999999999999999999999999999998743 249
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+|+||++.+++..||.+|+.......... ...+ ..........++.+++
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~--------------------~~~~-----------~~~~~~~~~~~~~~~l 129 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRST--------------------WRSL-----------FGLFPKEEKQRALAAL 129 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchh--------------------hhhh-----------cccCcHHHHHHHHHHH
Confidence 99999998888899999985421100000 0000 0000112234577788
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFL 319 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l 319 (554)
+.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||++++
T Consensus 130 ~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~ 208 (241)
T cd03256 130 ERVGLL-DKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLA 208 (241)
T ss_pred HHcCCh-hhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 999986 456888999999999999999999999999999999999999999999888753 489999999999999
Q ss_pred HhhcceEEEeeCCeeeeccCChhHH
Q 008771 320 DQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
..+||+|++|++|++. +.|+++++
T Consensus 209 ~~~~d~v~~l~~G~i~-~~~~~~~~ 232 (241)
T cd03256 209 REYADRIVGLKDGRIV-FDGPPAEL 232 (241)
T ss_pred HHhCCEEEEEECCEEE-eecCHHHh
Confidence 9999999999999974 55766654
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=352.11 Aligned_cols=207 Identities=28% Similarity=0.413 Sum_probs=175.6
Q ss_pred EEEEeEEEEeCC-eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEEE
Q 008771 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (554)
Q Consensus 98 i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~v 166 (554)
|+++|++++|++ +.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 478999999987 789999999999999999999999999999999999999999999998743 258999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
||++.+++..||.+|+..... . .........+++.++++.+
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~---------------~------------------------~~~~~~~~~~~~~~~l~~l 121 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPK---------------L------------------------LKWPKEKIRERADELLALV 121 (242)
T ss_pred ccCccccCCCcHHHHHHHHHH---------------H------------------------cCCCHHHHHHHHHHHHHHc
Confidence 999988888999999753210 0 0001112345677889999
Q ss_pred CCCc-cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 008771 247 GFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 247 gl~~-~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~ 321 (554)
|+.. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++.++.+.|++ .|.|||+||||++++..
T Consensus 122 ~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~ 201 (242)
T cd03295 122 GLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFR 201 (242)
T ss_pred CCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 9974 356888999999999999999999999999999999999999999999888753 38999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+||+|++|++|++. +.|+..++
T Consensus 202 ~~d~i~~l~~G~i~-~~~~~~~~ 223 (242)
T cd03295 202 LADRIAIMKNGEIV-QVGTPDEI 223 (242)
T ss_pred hCCEEEEEECCEEE-EecCHHHH
Confidence 99999999999984 45655443
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-44 Score=346.55 Aligned_cols=196 Identities=28% Similarity=0.450 Sum_probs=168.0
Q ss_pred EEEEeEEEEeCC-eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------ceE
Q 008771 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MKI 163 (554)
Q Consensus 98 i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------~~i 163 (554)
|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 478999999964 689999999999999999999999999999999999999999999998742 149
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+|++|++.+++..|+.+|+...... .....+...+++.+++
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l 121 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEV---------------------------------------TGVPPREIRKRVPAAL 121 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHH
Confidence 9999999888889999997532100 0001112345677788
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~ 320 (554)
+.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.+++ .+.|||+||||++++.
T Consensus 122 ~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~ 200 (214)
T cd03292 122 ELVGLS-HKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVD 200 (214)
T ss_pred HHcCCH-HHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 889986 456888999999999999999999999999999999999999999999887753 4899999999999999
Q ss_pred hhcceEEEeeCCe
Q 008771 321 QLCTKIVETEMGV 333 (554)
Q Consensus 321 ~~~d~i~~l~~g~ 333 (554)
.+||+|++|++|+
T Consensus 201 ~~~d~i~~l~~G~ 213 (214)
T cd03292 201 TTRHRVIALERGK 213 (214)
T ss_pred HhCCEEEEEeCCc
Confidence 9999999999885
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=359.73 Aligned_cols=210 Identities=23% Similarity=0.411 Sum_probs=176.1
Q ss_pred cEEEEeEEEEeCC-----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------
Q 008771 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~-----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------- 160 (554)
.|+++||++.|++ +++|+||||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 3899999999974 469999999999999999999999999999999999999999999998743
Q ss_pred -ceEEEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 -MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 -~~i~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..|||+||++. .++..||.+|+...... ..+...+..++
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~ 122 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPIN---------------------------------------LGLSEEEIENR 122 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHH---------------------------------------CCCCHHHHHHH
Confidence 25899999974 33567999998532100 00112234456
Q ss_pred HHHHhhhcCCCc-cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 008771 239 VSKLMPELGFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~~-~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiis 313 (554)
+.++++.+||.. ...++++.+||||||||++|||||+.+|++|||||||++||+.++.+|.+++++ .|.|||+||
T Consensus 123 ~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vt 202 (287)
T PRK13637 123 VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVS 202 (287)
T ss_pred HHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 788899999962 457899999999999999999999999999999999999999999999888743 489999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||++++..+||+|++|++|++. +.|+..++..
T Consensus 203 Hd~~~~~~~~drv~~l~~G~i~-~~g~~~~~~~ 234 (287)
T PRK13637 203 HSMEDVAKLADRIIVMNKGKCE-LQGTPREVFK 234 (287)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999974 5677666543
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=395.79 Aligned_cols=211 Identities=30% Similarity=0.488 Sum_probs=186.0
Q ss_pred CCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccc-cc
Q 008771 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF-EV 172 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~-~~ 172 (554)
...+|+++||+++|+++++|+|+||+|.+|+++||+|+||||||||+++|+|+++|++|+|.+ |.+..|||++|++ .+
T Consensus 316 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~~~~l 394 (635)
T PRK11147 316 GKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQHRAEL 394 (635)
T ss_pred CCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCccccc
Confidence 346799999999999889999999999999999999999999999999999999999999998 5667899999986 46
Q ss_pred ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccc
Q 008771 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (554)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 252 (554)
++..||.+++...... .........+..++..+|+..+.
T Consensus 395 ~~~~tv~e~l~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~~l~~~~ 433 (635)
T PRK11147 395 DPEKTVMDNLAEGKQE-----------------------------------------VMVNGRPRHVLGYLQDFLFHPKR 433 (635)
T ss_pred CCCCCHHHHHHhhccc-----------------------------------------ccccchHHHHHHHHHhcCCCHHH
Confidence 6788999987532100 00001123567788889997666
Q ss_pred cCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEee-C
Q 008771 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE-M 331 (554)
Q Consensus 253 ~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~-~ 331 (554)
.++++.+|||||||||+||++|+.+|+||||||||||||+.+++.|.++|+++++|||+||||++++..+||+|++|+ +
T Consensus 434 ~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~ 513 (635)
T PRK11147 434 AMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGN 513 (635)
T ss_pred HhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCC
Confidence 789999999999999999999999999999999999999999999999999888899999999999999999999998 8
Q ss_pred CeeeeccCChhHHHH
Q 008771 332 GVSRTYEGNYSQYVL 346 (554)
Q Consensus 332 g~~~~~~G~~~~~~~ 346 (554)
|++..|.|+|++|..
T Consensus 514 g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 514 GKIGRYVGGYHDARQ 528 (635)
T ss_pred CeEEEccCCHHHHHH
Confidence 999999999999965
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=350.42 Aligned_cols=208 Identities=26% Similarity=0.413 Sum_probs=177.5
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------------- 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~--------------- 161 (554)
+|+++|+++.|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 48999999999988999999999999999999999999999999999999999999999987531
Q ss_pred -eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 162 -KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 162 -~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
.|+|++|++.+++..|+.+|+....... . .........++.
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~--------------~------------------------~~~~~~~~~~~~ 123 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRV--------------L------------------------GLSKDQALARAE 123 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHH--------------c------------------------CCCHHHHHHHHH
Confidence 4899999998888899999985311000 0 001112234577
Q ss_pred HHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHH
Q 008771 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA 317 (554)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~ 317 (554)
++++.+|+. ...++.+.+||||||||++|||||+.+|++|||||||++||+.++.++.+.+++ .+.|+|+||||++
T Consensus 124 ~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 202 (242)
T PRK11124 124 KLLERLRLK-PYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE 202 (242)
T ss_pred HHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 888899996 466888999999999999999999999999999999999999999999888753 5899999999999
Q ss_pred HHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 318 FLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
++.++||+|++|++|++. +.|+++++
T Consensus 203 ~~~~~~d~i~~l~~g~i~-~~~~~~~~ 228 (242)
T PRK11124 203 VARKTASRVVYMENGHIV-EQGDASCF 228 (242)
T ss_pred HHHHhcCEEEEEECCEEE-EeCCHHHh
Confidence 999999999999999974 66777654
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-45 Score=334.34 Aligned_cols=211 Identities=30% Similarity=0.434 Sum_probs=182.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------eEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-----------~i~ 164 (554)
+.+.++|+.|+|+.++++++|||+|++||+|||+|||||||||.+.+++|+.+|++|+|.+++.++ .||
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 458999999999999999999999999999999999999999999999999999999999998653 599
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcc--cHHHHHHHH
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD--TLDAKVSKL 242 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 242 (554)
|+||++..|-.+||.||++..+.-. ..+.+ +...+++++
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~---------------------------------------~~d~~~~~~~~~l~~L 123 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIR---------------------------------------EKDLKKAERKEELDAL 123 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhh---------------------------------------hcchhHHHHHHHHHHH
Confidence 9999999999999999997542100 00111 223457789
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHH---HHHHccCCCeEEEEecCHHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL---EGYLGKQDVPMVIISHDRAFL 319 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l---~~~l~~~g~tvIiisHd~~~l 319 (554)
|++|.+. +..+++..+||||||+|+.|||||+.+|+++|||||++|.||.+...+ ...|++.|..|+|+.|+..+.
T Consensus 124 L~ef~i~-hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREt 202 (243)
T COG1137 124 LEEFHIT-HLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRET 202 (243)
T ss_pred HHHhchH-HHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHH
Confidence 9999996 466888899999999999999999999999999999999999876555 455678899999999999999
Q ss_pred HhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 320 DQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
..+|||.+++.+|++ .+.|+.++.+..
T Consensus 203 L~i~dRaYIi~~G~v-la~G~p~ei~~n 229 (243)
T COG1137 203 LDICDRAYIISDGKV-LAEGSPEEIVNN 229 (243)
T ss_pred HhhhheEEEEecCeE-EecCCHHHHhcC
Confidence 999999999999987 688988877654
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=348.88 Aligned_cols=207 Identities=23% Similarity=0.370 Sum_probs=174.4
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEEe
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS 167 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v~ 167 (554)
+|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 3789999999998899999999999999999999999999999999999999999999998753 2599999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
|++.+++..|+.+|+...... ...........+.++++.+|
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~g 121 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAAL---------------------------------------HGLSRAEARERIAALLARLG 121 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcC
Confidence 999888889999987532100 00011122345677888899
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhc
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~ 323 (554)
+. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|+|++|||++++.. |
T Consensus 122 l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~ 199 (236)
T TIGR03864 122 LA-ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-D 199 (236)
T ss_pred Ch-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-C
Confidence 86 456888999999999999999999999999999999999999999999887743 47899999999999975 9
Q ss_pred ceEEEeeCCeeeeccCChhHHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|+|++|++|++. ..|+.+++.
T Consensus 200 d~i~~l~~G~i~-~~~~~~~~~ 220 (236)
T TIGR03864 200 DRLVVLHRGRVL-ADGAAAELR 220 (236)
T ss_pred CEEEEEeCCeEE-EeCCHHHHH
Confidence 999999999974 456655443
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=372.26 Aligned_cols=211 Identities=30% Similarity=0.408 Sum_probs=180.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~ 165 (554)
++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .+|||
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 36899999999999999999999999999999999999999999999999999999999998843 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCC--cccHHHHHHHHh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN--LDTLDAKVSKLM 243 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l 243 (554)
++|++.+++.+||.+|+........ . .+. .....+++.+++
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~-----------------------~--------------~~~~~~~~~~~~v~~~l 124 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHR-----------------------S--------------RFDTWTETDRAAVERAM 124 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhc-----------------------c--------------cccCCCHHHHHHHHHHH
Confidence 9999998889999999864311000 0 000 112345678899
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~ 320 (554)
+.+|+. +..++++.+|||||||||+|||||+++|++|||||||++||+.++..+.++|+ +.+.|||++|||++++.
T Consensus 125 e~vgl~-~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~ 203 (402)
T PRK09536 125 ERTGVA-QFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAA 203 (402)
T ss_pred HHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 999996 56789999999999999999999999999999999999999999988888765 35889999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChhHHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
++||||++|++|++. +.|++++++
T Consensus 204 ~~adrii~l~~G~iv-~~G~~~ev~ 227 (402)
T PRK09536 204 RYCDELVLLADGRVR-AAGPPADVL 227 (402)
T ss_pred HhCCEEEEEECCEEE-EecCHHHHh
Confidence 999999999999974 567776554
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=357.33 Aligned_cols=207 Identities=26% Similarity=0.383 Sum_probs=174.8
Q ss_pred ccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEE
Q 008771 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~ 164 (554)
++|+++|+++.|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 3689999999996 5679999999999999999999999999999999999999999999998843 2599
Q ss_pred EEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 165 FLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 165 ~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
|+||++. .++..||.+|+...... ..+.....+.++..++
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l 123 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVN---------------------------------------MGLDKDEVERRVEEAL 123 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHH---------------------------------------cCCCHHHHHHHHHHHH
Confidence 9999974 34567999998532100 0011122345677889
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~ 320 (554)
+.+|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++.++.+.|++ .|.|||++|||++++.
T Consensus 124 ~~~~L~-~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~ 202 (274)
T PRK13647 124 KAVRMW-DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAA 202 (274)
T ss_pred HHCCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 999996 567899999999999999999999999999999999999999999999888753 4899999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChhH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~ 343 (554)
++||+|++|++|++. +.|+..+
T Consensus 203 ~~~d~i~~l~~G~i~-~~g~~~~ 224 (274)
T PRK13647 203 EWADQVIVLKEGRVL-AEGDKSL 224 (274)
T ss_pred HhCCEEEEEECCEEE-EECCHHH
Confidence 999999999999974 5566543
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=346.72 Aligned_cols=199 Identities=27% Similarity=0.408 Sum_probs=169.7
Q ss_pred ccEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------
Q 008771 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------- 160 (554)
++|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 56999999999975 369999999999999999999999999999999999999999999998742
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..++|++|++.+++..|+.+|+..... . .........+
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~---------------~------------------------~~~~~~~~~~ 125 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPAL---------------L------------------------RGESSRQSRN 125 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHH---------------h------------------------cCCCHHHHHH
Confidence 259999999988888899999753210 0 0001112345
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEe
Q 008771 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIIS 313 (554)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiis 313 (554)
++.++++.+|+. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++++.+.|+ +.|.|||+||
T Consensus 126 ~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 204 (228)
T PRK10584 126 GAKALLEQLGLG-KRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVT 204 (228)
T ss_pred HHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 678889999996 45688899999999999999999999999999999999999999999998874 3488999999
Q ss_pred cCHHHHHhhcceEEEeeCCeee
Q 008771 314 HDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~ 335 (554)
||++++.. ||+|++|++|++.
T Consensus 205 H~~~~~~~-~d~i~~l~~g~i~ 225 (228)
T PRK10584 205 HDLQLAAR-CDRRLRLVNGQLQ 225 (228)
T ss_pred cCHHHHHh-CCEEEEEECCEEE
Confidence 99999864 9999999999874
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-44 Score=345.39 Aligned_cols=195 Identities=32% Similarity=0.479 Sum_probs=165.1
Q ss_pred EEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEEE
Q 008771 99 KLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (554)
Q Consensus 99 ~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~v 166 (554)
+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999987 789999999999999999999999999999999999999999999998742 258999
Q ss_pred eccccc-ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 167 SQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 167 ~Q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
+|++.. ++..|+.+|+...... ..........++.++++.
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~ 121 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLEN---------------------------------------LGLPEEEIEERVEEALEL 121 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHH
Confidence 999753 5678999987532100 000111223456778888
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~ 322 (554)
+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.+.|++ .+.|||+||||++++..+
T Consensus 122 ~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~ 200 (211)
T cd03225 122 VGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLEL 200 (211)
T ss_pred cCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 9986 456888999999999999999999999999999999999999999999888753 478999999999999999
Q ss_pred cceEEEeeCCe
Q 008771 323 CTKIVETEMGV 333 (554)
Q Consensus 323 ~d~i~~l~~g~ 333 (554)
||+|++|++|+
T Consensus 201 ~d~i~~l~~G~ 211 (211)
T cd03225 201 ADRVIVLEDGK 211 (211)
T ss_pred CCEEEEEeCCC
Confidence 99999999873
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=345.90 Aligned_cols=196 Identities=24% Similarity=0.442 Sum_probs=167.1
Q ss_pred EEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------
Q 008771 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (554)
Q Consensus 98 i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------- 160 (554)
|+++||+++|++ +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 789999999964 579999999999999999999999999999999999999999999998742
Q ss_pred -ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 161 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
..|+|++|++.+++..|+.+|+..... .. .........++
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~---------------~~------------------------~~~~~~~~~~~ 122 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLL---------------IG------------------------KKSVKEAKERA 122 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHH---------------hc------------------------CCCHHHHHHHH
Confidence 259999999988778899999753210 00 00111223456
Q ss_pred HHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 008771 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (554)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd 315 (554)
.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .+.|||+||||
T Consensus 123 ~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~ 201 (221)
T TIGR02211 123 YEMLEKVGLE-HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHD 201 (221)
T ss_pred HHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 7788899996 456888999999999999999999999999999999999999999999888752 48899999999
Q ss_pred HHHHHhhcceEEEeeCCee
Q 008771 316 RAFLDQLCTKIVETEMGVS 334 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~ 334 (554)
++++.. ||+|++|++|++
T Consensus 202 ~~~~~~-~d~v~~l~~G~i 219 (221)
T TIGR02211 202 LELAKK-LDRVLEMKDGQL 219 (221)
T ss_pred HHHHhh-cCEEEEEeCCEe
Confidence 999965 899999999976
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=363.14 Aligned_cols=212 Identities=22% Similarity=0.385 Sum_probs=177.7
Q ss_pred CccEEEEeEEEEeCC----------eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----
Q 008771 95 SSGVKLENISKSYKG----------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~----------~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---- 160 (554)
.++|+++||++.|+. ..+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 356999999999962 479999999999999999999999999999999999999999999998743
Q ss_pred ---------ceEEEEeccc--ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHh
Q 008771 161 ---------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229 (554)
Q Consensus 161 ---------~~i~~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (554)
..|+||||++ .+.+.+||.+++...+... ..
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--------------------------------------~~ 124 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--------------------------------------TS 124 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--------------------------------------cC
Confidence 2599999998 4667789988774321100 00
Q ss_pred CCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----C
Q 008771 230 VNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----Q 305 (554)
Q Consensus 230 ~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~ 305 (554)
+...+...++.++|+.+||.....++++++|||||+|||+|||||+.+|++||+||||++||+.++.++.++|++ .
T Consensus 125 ~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~ 204 (327)
T PRK11308 125 LSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQEL 204 (327)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHc
Confidence 112234457888999999975567899999999999999999999999999999999999999999998887743 5
Q ss_pred CCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 306 g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|.|+|+||||+.++.++||+|++|++|+++ ..|+..++.
T Consensus 205 g~til~iTHdl~~~~~~adrv~vm~~G~iv-e~g~~~~~~ 243 (327)
T PRK11308 205 GLSYVFISHDLSVVEHIADEVMVMYLGRCV-EKGTKEQIF 243 (327)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 899999999999999999999999999985 456655443
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=362.49 Aligned_cols=199 Identities=29% Similarity=0.459 Sum_probs=170.2
Q ss_pred EEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------eEEEEecccccccC
Q 008771 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLSQEFEVSMS 175 (554)
Q Consensus 105 ~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------~i~~v~Q~~~~~~~ 175 (554)
|+|+++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. .|||+||++.+++.
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 468888899999999999999999999999999999999999999999999988532 59999999998888
Q ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCC
Q 008771 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (554)
Q Consensus 176 ~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~ 255 (554)
+||.+|+..... + ..........++.++++.+|+. ...++
T Consensus 81 ~tv~e~l~~~~~---------------~------------------------~~~~~~~~~~~~~~~l~~~~l~-~~~~~ 120 (302)
T TIGR01188 81 LTGRENLEMMGR---------------L------------------------YGLPKDEAEERAEELLELFELG-EAADR 120 (302)
T ss_pred CcHHHHHHHHHH---------------H------------------------cCCCHHHHHHHHHHHHHHcCCh-hHhCC
Confidence 999999753110 0 0011122345678889999996 45789
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceEEEeeCC
Q 008771 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMG 332 (554)
Q Consensus 256 ~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i~~l~~g 332 (554)
++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|++ .|.|||++|||++++.++||+|++|++|
T Consensus 121 ~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G 200 (302)
T TIGR01188 121 PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHG 200 (302)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999888753 4899999999999999999999999999
Q ss_pred eeeeccCChhHH
Q 008771 333 VSRTYEGNYSQY 344 (554)
Q Consensus 333 ~~~~~~G~~~~~ 344 (554)
++. +.|+.+++
T Consensus 201 ~i~-~~g~~~~l 211 (302)
T TIGR01188 201 RII-AEGTPEEL 211 (302)
T ss_pred EEE-EECCHHHH
Confidence 974 56766544
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=358.03 Aligned_cols=209 Identities=22% Similarity=0.321 Sum_probs=174.9
Q ss_pred cEEEEeEEEEeCC-----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------
Q 008771 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~-----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------- 160 (554)
.|+++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4899999999974 469999999999999999999999999999999999999999999998853
Q ss_pred ---ceEEEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH
Q 008771 161 ---MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (554)
Q Consensus 161 ---~~i~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (554)
..|+|++|++. .++..||.+|+...... .........
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~ 122 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKN---------------------------------------FGFSEDEAK 122 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHH---------------------------------------cCCCHHHHH
Confidence 14899999973 33457999987532100 001112234
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEe
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiis 313 (554)
+++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|+ +.|.|||+||
T Consensus 123 ~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivs 202 (287)
T PRK13641 123 EKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVT 202 (287)
T ss_pred HHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 5678889999996456789999999999999999999999999999999999999999999988875 3588999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
||++++..+||+|++|++|++ .+.|...++.
T Consensus 203 H~~~~~~~~~d~v~~l~~G~i-~~~g~~~~~~ 233 (287)
T PRK13641 203 HNMDDVAEYADDVLVLEHGKL-IKHASPKEIF 233 (287)
T ss_pred CCHHHHHHhCCEEEEEECCEE-EEeCCHHHHh
Confidence 999999999999999999997 4566665543
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=349.27 Aligned_cols=204 Identities=23% Similarity=0.361 Sum_probs=172.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~ 165 (554)
..|+++|++++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 2 NEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred ceEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 35899999999988889999999999999999999999999999999999999999999998743 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.++. .|+.+|+...... . .....++.++++.
T Consensus 82 ~~q~~~~~~-~tv~e~l~~~~~~------------------------------------------~-~~~~~~~~~~l~~ 117 (241)
T PRK14250 82 VFQQPHLFE-GTVKDNIEYGPML------------------------------------------K-GEKNVDVEYYLSI 117 (241)
T ss_pred EecCchhch-hhHHHHHhcchhh------------------------------------------c-CcHHHHHHHHHHH
Confidence 999987764 6998887421100 0 0012346677888
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~ 321 (554)
+|+.....++++.+||||||||++|||||+.+|++|||||||++||+.+++++.+.|++ .|.|||+||||++++..
T Consensus 118 ~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~ 197 (241)
T PRK14250 118 VGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKR 197 (241)
T ss_pred cCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHH
Confidence 89864566888999999999999999999999999999999999999999999887753 48999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+||+|++|++|++.. .|...++
T Consensus 198 ~~d~i~~l~~G~i~~-~~~~~~~ 219 (241)
T PRK14250 198 IGDYTAFLNKGILVE-YAKTYDF 219 (241)
T ss_pred hCCEEEEEeCCEEEE-eCCHHHH
Confidence 999999999999854 3444433
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=346.94 Aligned_cols=199 Identities=24% Similarity=0.446 Sum_probs=169.5
Q ss_pred ccEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------
Q 008771 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------- 160 (554)
++|+++||++.|++ .++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 46999999999964 579999999999999999999999999999999999999999999998742
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|++|++.+++..|+.+|+..... + ........+.
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---------------~------------------------~~~~~~~~~~ 124 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLL---------------I------------------------GKKKPAEINS 124 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHH---------------h------------------------cCCCHHHHHH
Confidence 249999999988888899999853210 0 0001112345
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 008771 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (554)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiis 313 (554)
++.++++.+|+. +..++.+.+||||||||++|||||+.+|++|||||||++||+.+++++.+.|++ .|.|||+||
T Consensus 125 ~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~s 203 (233)
T PRK11629 125 RALEMLAAVGLE-HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVT 203 (233)
T ss_pred HHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 677889999996 456788999999999999999999999999999999999999999999888753 488999999
Q ss_pred cCHHHHHhhcceEEEeeCCeee
Q 008771 314 HDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~ 335 (554)
||++++.. +|++++|++|++.
T Consensus 204 H~~~~~~~-~~~~~~l~~G~i~ 224 (233)
T PRK11629 204 HDLQLAKR-MSRQLEMRDGRLT 224 (233)
T ss_pred CCHHHHHh-hCEEEEEECCEEE
Confidence 99999987 5799999999874
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=361.78 Aligned_cols=214 Identities=16% Similarity=0.246 Sum_probs=177.6
Q ss_pred CCCccEEEEeEEEEeCC-----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------
Q 008771 93 SISSGVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------- 160 (554)
Q Consensus 93 ~~~~~i~~~~ls~~y~~-----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------- 160 (554)
...++|+++|++|.|++ .++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 34467999999999964 369999999999999999999999999999999999999999999998621
Q ss_pred -------------------ceEEEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 008771 161 -------------------MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEF 220 (554)
Q Consensus 161 -------------------~~i~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (554)
..|+||+|++. ..+..||.+|+..+...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~-------------------------------- 144 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVA-------------------------------- 144 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHh--------------------------------
Confidence 14899999974 23456999998532100
Q ss_pred HHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHH
Q 008771 221 DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG 300 (554)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~ 300 (554)
..........++.++++.+|++....++.+.+|||||||||+|||||+.+|++|||||||++||+.++.++.+
T Consensus 145 -------~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~ 217 (320)
T PRK13631 145 -------LGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ 217 (320)
T ss_pred -------cCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH
Confidence 0011122345677889999996556788999999999999999999999999999999999999999999988
Q ss_pred HHc---cCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 301 YLG---KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 301 ~l~---~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
.|+ +.|.|||+||||++++..+||+|++|++|++. ..|+..++..
T Consensus 218 ~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~-~~g~~~~~~~ 265 (320)
T PRK13631 218 LILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL-KTGTPYEIFT 265 (320)
T ss_pred HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 874 35899999999999999999999999999974 5677766544
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=358.56 Aligned_cols=210 Identities=24% Similarity=0.381 Sum_probs=175.2
Q ss_pred cEEEEeEEEEeCC-----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------
Q 008771 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~-----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------- 161 (554)
.|+++||+++|++ +++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 3899999999963 3699999999999999999999999999999999999999999999987431
Q ss_pred ----eEEEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH
Q 008771 162 ----KIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (554)
Q Consensus 162 ----~i~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (554)
.|||+||++. .++..||.+|+...... ..+......
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~---------------------------------------~~~~~~~~~ 122 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKN---------------------------------------FKMNLDEVK 122 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHH---------------------------------------cCCCHHHHH
Confidence 5899999973 23445999988532100 001122344
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEE
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII 312 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIii 312 (554)
.++.++++.+|+.....++.+.+|||||||||+|||||+.+|++|||||||++||+.++.++.+++++ .|.|||+|
T Consensus 123 ~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~v 202 (286)
T PRK13646 123 NYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILV 202 (286)
T ss_pred HHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 56788899999964567889999999999999999999999999999999999999999999888753 48999999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
|||++++.++||+|++|++|++. +.|+..++..
T Consensus 203 tH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~ 235 (286)
T PRK13646 203 SHDMNEVARYADEVIVMKEGSIV-SQTSPKELFK 235 (286)
T ss_pred ecCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999974 5677666543
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=345.33 Aligned_cols=203 Identities=25% Similarity=0.397 Sum_probs=168.8
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEEEE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~~v 166 (554)
|+++||+++|+++++|+|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 578999999998899999999999999999999999999999999999999999999998732 249999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
||++.+++..|+.+|+....... .......++.++++.+
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~-----------------------------------------~~~~~~~~~~~~l~~~ 119 (222)
T cd03224 81 PEGRRIFPELTVEENLLLGAYAR-----------------------------------------RRAKRKARLERVYELF 119 (222)
T ss_pred ccccccCCCCcHHHHHHHHhhhc-----------------------------------------CchhHHHHHHHHHHHH
Confidence 99998888889999985321100 0001122334445555
Q ss_pred -CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 008771 247 -GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 247 -gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~ 322 (554)
++. ...++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|||++|||++++..+
T Consensus 120 ~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 198 (222)
T cd03224 120 PRLK-ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEI 198 (222)
T ss_pred Hhhh-hhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 343 345788899999999999999999999999999999999999999999888753 578999999999999999
Q ss_pred cceEEEeeCCeeeeccCChhH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~ 343 (554)
||+|++|++|++. ..|+..+
T Consensus 199 ~d~i~~l~~G~i~-~~~~~~~ 218 (222)
T cd03224 199 ADRAYVLERGRVV-LEGTAAE 218 (222)
T ss_pred ccEEEEeeCCeEE-EeCCHHH
Confidence 9999999999874 4555443
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=344.72 Aligned_cols=199 Identities=31% Similarity=0.495 Sum_probs=166.4
Q ss_pred EEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----ceEEEEecccccc
Q 008771 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEFEVS 173 (554)
Q Consensus 99 ~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----~~i~~v~Q~~~~~ 173 (554)
+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|++|++.++
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 36899999988889999999999999999999999999999999999999999999999854 3599999998763
Q ss_pred --cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcc
Q 008771 174 --MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (554)
Q Consensus 174 --~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (554)
+..||.+|+........ . .. .........++.++++.+|+. .
T Consensus 81 ~~~~~tv~e~l~~~~~~~~--------------~------~~---------------~~~~~~~~~~~~~~l~~~~l~-~ 124 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHK--------------G------LF---------------RRLSKADKAKVDEALERVGLS-E 124 (213)
T ss_pred cCCCCcHHHHHHhcccccc--------------c------cc---------------cCCCHHHHHHHHHHHHHcCCH-H
Confidence 34799999854211000 0 00 000012234677888999986 4
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceEEE
Q 008771 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVE 328 (554)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i~~ 328 (554)
..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .+.|||+||||++++.++||+|++
T Consensus 125 ~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~ 204 (213)
T cd03235 125 LADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLL 204 (213)
T ss_pred HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 67889999999999999999999999999999999999999999999888753 578999999999999999999999
Q ss_pred eeCCe
Q 008771 329 TEMGV 333 (554)
Q Consensus 329 l~~g~ 333 (554)
|++|.
T Consensus 205 l~~~~ 209 (213)
T cd03235 205 LNRTV 209 (213)
T ss_pred EcCcE
Confidence 98874
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=348.02 Aligned_cols=216 Identities=29% Similarity=0.428 Sum_probs=178.5
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAF 165 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~~ 165 (554)
+|+++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 5899999999988889999999999999999999999999999999999999999999998753 14999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.+++..||.+|+......... ....+ ........+.++.++++.
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~--------------------~~~~~-----------~~~~~~~~~~~~~~~l~~ 130 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKS--------------------VFASL-----------FFRLSAEEKDRIEEVLET 130 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhcccc--------------------ccccc-----------ccccHHHHHHHHHHHHHH
Confidence 99999988889999998542110000 00000 000001234567888999
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhc
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~ 323 (554)
+|+. ...++.+.+|||||+|||+|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+||||++++.++|
T Consensus 131 ~~l~-~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~ 209 (242)
T TIGR03411 131 IGLA-DEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIA 209 (242)
T ss_pred cCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC
Confidence 9996 456888999999999999999999999999999999999999999999988764 3689999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|+|++|++|++. ..|+++++.
T Consensus 210 d~i~~l~~g~~~-~~~~~~~~~ 230 (242)
T TIGR03411 210 DKVTVLHQGSVL-AEGSLDQVQ 230 (242)
T ss_pred CEEEEEECCeEE-eeCCHHHHh
Confidence 999999999974 567766653
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=349.44 Aligned_cols=209 Identities=26% Similarity=0.433 Sum_probs=176.8
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAF 165 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~~ 165 (554)
+|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 5899999999998899999999999999999999999999999999999999999999998732 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.+++..||.+|+..... +.. .........++.++++.
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~---------------~~~-----------------------~~~~~~~~~~~~~~l~~ 124 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQ---------------IRD-----------------------DLSAEQREDRANELMEE 124 (241)
T ss_pred eccCCcccccCcHHHHHhhhhh---------------ccc-----------------------ccCHHHHHHHHHHHHHH
Confidence 9999988888899999853210 000 00111234557778888
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~~ 322 (554)
+|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++..+.+.++ +.|.|+|++|||++++..+
T Consensus 125 ~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~ 203 (241)
T PRK10895 125 FHIE-HLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAV 203 (241)
T ss_pred cCCH-HHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHh
Confidence 8986 35678899999999999999999999999999999999999999988877664 4589999999999999999
Q ss_pred cceEEEeeCCeeeeccCChhHHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
||+|++|++|++. +.|+++++.
T Consensus 204 ~d~v~~l~~G~i~-~~~~~~~~~ 225 (241)
T PRK10895 204 CERAYIVSQGHLI-AHGTPTEIL 225 (241)
T ss_pred cCEEEEEeCCeEE-eeCCHHHHh
Confidence 9999999999974 567776654
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=347.20 Aligned_cols=202 Identities=23% Similarity=0.379 Sum_probs=168.6
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCC-----CCCceeEEEcCCC------------
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE-----EPDSGNVIKAKSN------------ 160 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~-----~p~~G~I~~~~~~------------ 160 (554)
|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|++ +|++|+|.++|.+
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 57899999999889999999999999999999999999999999999999 9999999998743
Q ss_pred ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 161 ~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
..|+|++|++.++ ..||.+|+...... .. ....+..++++.
T Consensus 81 ~~i~~~~q~~~~~-~~tv~e~l~~~~~~---------------~~-----------------------~~~~~~~~~~~~ 121 (227)
T cd03260 81 RRVGMVFQKPNPF-PGSIYDNVAYGLRL---------------HG-----------------------IKLKEELDERVE 121 (227)
T ss_pred hhEEEEecCchhc-cccHHHHHHhHHHh---------------cC-----------------------CCcHHHHHHHHH
Confidence 2489999998876 78999998532100 00 000011345677
Q ss_pred HHhhhcCCCccccCCC--CCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccC--CCeEEEEecCH
Q 008771 241 KLMPELGFTADDGDRL--VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDR 316 (554)
Q Consensus 241 ~~l~~lgl~~~~~~~~--~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--g~tvIiisHd~ 316 (554)
++++.+|+.. ..++. +.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++. ..|||+||||+
T Consensus 122 ~~l~~~~l~~-~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~ 200 (227)
T cd03260 122 EALRKAALWD-EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNM 200 (227)
T ss_pred HHHHHcCCCh-HHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccH
Confidence 8889999864 33444 5999999999999999999999999999999999999999999887542 27999999999
Q ss_pred HHHHhhcceEEEeeCCeeeeccCC
Q 008771 317 AFLDQLCTKIVETEMGVSRTYEGN 340 (554)
Q Consensus 317 ~~l~~~~d~i~~l~~g~~~~~~G~ 340 (554)
+++..+||+|++|++|++. +.|+
T Consensus 201 ~~~~~~~d~i~~l~~G~i~-~~g~ 223 (227)
T cd03260 201 QQAARVADRTAFLLNGRLV-EFGP 223 (227)
T ss_pred HHHHHhCCEEEEEeCCEEE-EecC
Confidence 9999999999999999874 3344
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=345.82 Aligned_cols=201 Identities=26% Similarity=0.420 Sum_probs=166.7
Q ss_pred cEEEEeEEEEeCCe----eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------------
Q 008771 97 GVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~~----~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------ 160 (554)
+|+++||+++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 37899999999765 79999999999999999999999999999999999999999999998742
Q ss_pred -ceEEEEeccc--ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccH-H
Q 008771 161 -MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL-D 236 (554)
Q Consensus 161 -~~i~~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 236 (554)
..++|++|++ .+++..||.+|+....... . . ...... .
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~---------------~-~----------------------~~~~~~~~ 122 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIH---------------G-K----------------------LSKKEARK 122 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhc---------------c-C----------------------CcHHHHHH
Confidence 2599999998 3556789999975321000 0 0 000001 1
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEE
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII 312 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIii 312 (554)
..+.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|||+|
T Consensus 123 ~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~ 202 (228)
T cd03257 123 EAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFI 202 (228)
T ss_pred HHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 11246778888854466888999999999999999999999999999999999999999999888753 38899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeee
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~ 335 (554)
|||++++..+||+|++|++|++.
T Consensus 203 sH~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 203 THDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred eCCHHHHHHhcCeEEEEeCCEEE
Confidence 99999999999999999999874
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=348.61 Aligned_cols=208 Identities=21% Similarity=0.297 Sum_probs=174.7
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC-----ceeEEEcCCC-----------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN----------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-----~G~I~~~~~~----------- 160 (554)
+|+++||+++|++..+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 478999999999888999999999999999999999999999999999999998 9999998743
Q ss_pred -ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 161 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
..|+|+||++.+++ .|+.+|+...... .. .........++
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~---------------~~-----------------------~~~~~~~~~~~ 121 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRL---------------HG-----------------------IKDKKELDEIV 121 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHh---------------cC-----------------------CCCHHHHHHHH
Confidence 24999999998877 8999998532100 00 00111234567
Q ss_pred HHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 008771 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (554)
Q Consensus 240 ~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisH 314 (554)
.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+|||
T Consensus 122 ~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH 201 (247)
T TIGR00972 122 EESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTH 201 (247)
T ss_pred HHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEec
Confidence 77888899862 356788999999999999999999999999999999999999999999888754 2589999999
Q ss_pred CHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|++++..+||+|++|++|++. ..|+.+++
T Consensus 202 ~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 230 (247)
T TIGR00972 202 NMQQAARISDRTAFFYDGELV-EYGPTEQI 230 (247)
T ss_pred CHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999974 45665554
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=379.01 Aligned_cols=209 Identities=38% Similarity=0.641 Sum_probs=188.5
Q ss_pred CCCccEEEEeEEEEeCC-eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccc
Q 008771 93 SISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171 (554)
Q Consensus 93 ~~~~~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~ 171 (554)
..+..++++|+++.|++ +++++++||.|.+|+++|||||||+|||||||+|+|...|.+|+|.+. ...+|||++|+..
T Consensus 317 ~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g-~~v~igyf~Q~~~ 395 (530)
T COG0488 317 LGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG-ETVKIGYFDQHRD 395 (530)
T ss_pred CCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeC-CceEEEEEEehhh
Confidence 45678999999999965 689999999999999999999999999999999999999999999986 5589999999973
Q ss_pred -cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc
Q 008771 172 -VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (554)
Q Consensus 172 -~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (554)
+....|+.+++...+ ....+..++.+|..|+|+.
T Consensus 396 ~l~~~~t~~d~l~~~~---------------------------------------------~~~~e~~~r~~L~~f~F~~ 430 (530)
T COG0488 396 ELDPDKTVLEELSEGF---------------------------------------------PDGDEQEVRAYLGRFGFTG 430 (530)
T ss_pred hcCccCcHHHHHHhhC---------------------------------------------ccccHHHHHHHHHHcCCCh
Confidence 345668887765321 0112567888999999999
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEee
Q 008771 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~ 330 (554)
+...+++..||||||.|++||+.++.+|+||||||||||||.++++.|.+.|.++.+|||+||||++|++.+|++|++++
T Consensus 431 ~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~ 510 (530)
T COG0488 431 EDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVE 510 (530)
T ss_pred HHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeccCChhHHHHHH
Q 008771 331 MGVSRTYEGNYSQYVLEK 348 (554)
Q Consensus 331 ~g~~~~~~G~~~~~~~~~ 348 (554)
+ .+..|.|+|++|.+.+
T Consensus 511 ~-~~~~~~g~y~~y~~~~ 527 (530)
T COG0488 511 D-KVEEFEGGYEDYLEQK 527 (530)
T ss_pred C-ceeEcCCCHHHHHHhh
Confidence 9 8889999999998754
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=350.75 Aligned_cols=208 Identities=28% Similarity=0.391 Sum_probs=175.6
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~v 166 (554)
+|+++|++++|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 4899999999998889999999999999999999999999999999999999999999998743 248999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
+|++.+++..||.+|+....... ....+....++.++++.+
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~ 122 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPH---------------------------------------GLSRAEDDALVAAALAQV 122 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhccc---------------------------------------CCCcHHHHHHHHHHHHHc
Confidence 99998878889999975321000 000112234567788889
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHc------cCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCH
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILL------QDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDR 316 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~------~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~ 316 (554)
|+. ...++.+.+|||||||||+||+||+ .+|++|||||||++||+.++..+.++|+ +.+.|||+||||+
T Consensus 123 ~l~-~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 201 (258)
T PRK13548 123 DLA-HLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL 201 (258)
T ss_pred CCH-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 986 4568899999999999999999999 5999999999999999999988887764 3578999999999
Q ss_pred HHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 317 AFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 317 ~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+++..+||+|++|++|++. +.|+++++.
T Consensus 202 ~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 229 (258)
T PRK13548 202 NLAARYADRIVLLHQGRLV-ADGTPAEVL 229 (258)
T ss_pred HHHHHhcCEEEEEECCEEE-eeCCHHHHh
Confidence 9999999999999999874 556665543
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=368.49 Aligned_cols=204 Identities=24% Similarity=0.325 Sum_probs=169.5
Q ss_pred EeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------ceEEEE
Q 008771 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFL 166 (554)
Q Consensus 101 ~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~~i~~v 166 (554)
.++.+.|+...+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|.+ ..|+|+
T Consensus 32 ~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv 111 (400)
T PRK10070 32 EQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMV 111 (400)
T ss_pred HHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEE
Confidence 333333333348999999999999999999999999999999999999999999998743 259999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
+|++.+++..||.+|+...... .........+++.++++.+
T Consensus 112 ~Q~~~l~~~~Tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~~e~L~~~ 152 (400)
T PRK10070 112 FQSFALMPHMTVLDNTAFGMEL---------------------------------------AGINAEERREKALDALRQV 152 (400)
T ss_pred ECCCcCCCCCCHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHc
Confidence 9999998899999998532100 0011122345678889999
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhh
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~ 322 (554)
||. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.+ .++|||+||||++++..+
T Consensus 153 gL~-~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~ 231 (400)
T PRK10070 153 GLE-NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRI 231 (400)
T ss_pred CCC-hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHh
Confidence 996 467899999999999999999999999999999999999999999999887742 589999999999999999
Q ss_pred cceEEEeeCCeeeeccCChhHHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
||+|++|++|++. ..|+..++.
T Consensus 232 ~Dri~vL~~G~i~-~~g~~~~l~ 253 (400)
T PRK10070 232 GDRIAIMQNGEVV-QVGTPDEIL 253 (400)
T ss_pred CCEEEEEECCEEE-ecCCHHHHH
Confidence 9999999999874 556665554
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=352.13 Aligned_cols=209 Identities=24% Similarity=0.453 Sum_probs=173.8
Q ss_pred cEEEEeEEEEeC---------CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------
Q 008771 97 GVKLENISKSYK---------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~---------~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------- 160 (554)
+|+++||+++|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 489999999995 3679999999999999999999999999999999999999999999998742
Q ss_pred ------ceEEEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCc
Q 008771 161 ------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (554)
Q Consensus 161 ------~~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (554)
..|+|++|++. +++..||.+|+....... ..+..
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--------------------------------------~~~~~ 123 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--------------------------------------TSLDE 123 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--------------------------------------cCCCH
Confidence 14999999973 456789999875321000 00111
Q ss_pred ccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCe
Q 008771 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVP 308 (554)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~t 308 (554)
.....++.++++.+|+.....++++.+|||||+|||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|
T Consensus 124 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~t 203 (265)
T TIGR02769 124 SEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTA 203 (265)
T ss_pred HHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcE
Confidence 123456778889999964566889999999999999999999999999999999999999998888887643 4899
Q ss_pred EEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 309 MVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 309 vIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||+||||++++..+||+|++|++|++. ..|+.+++
T Consensus 204 iiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 238 (265)
T TIGR02769 204 YLFITHDLRLVQSFCQRVAVMDKGQIV-EECDVAQL 238 (265)
T ss_pred EEEEeCCHHHHHHHhcEEEEEeCCEEE-EECCHHHH
Confidence 999999999999999999999999874 56766554
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-43 Score=347.21 Aligned_cols=213 Identities=24% Similarity=0.319 Sum_probs=174.5
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCC--CCCceeEEEcCCC-----------ceEE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p~~G~I~~~~~~-----------~~i~ 164 (554)
|+++||+++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|.+ ..++
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF 80 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence 47899999999889999999999999999999999999999999999995 7999999998742 2389
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|++|++.+++..|+.+++......... ... . .........+++.++++
T Consensus 81 ~v~q~~~~~~~~t~~~~~~~~~~~~~~-----------~~~--~-------------------~~~~~~~~~~~~~~~l~ 128 (243)
T TIGR01978 81 LAFQYPEEIPGVSNLEFLRSALNARRS-----------ARG--E-------------------EPLDLLDFLKLLKAKLA 128 (243)
T ss_pred eeeccccccCCcCHHHHHHHHHHHhhc-----------ccc--c-------------------ccccHHHHHHHHHHHHH
Confidence 999999988889999987532110000 000 0 00011123456788899
Q ss_pred hcCCCccccCCCCC-CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHH
Q 008771 245 ELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (554)
Q Consensus 245 ~lgl~~~~~~~~~~-~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~ 320 (554)
.+|++....++++. +|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .|.|||+||||++++.
T Consensus 129 ~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~ 208 (243)
T TIGR01978 129 LLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLN 208 (243)
T ss_pred HcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHH
Confidence 99997555677776 5999999999999999999999999999999999999999988754 4789999999999999
Q ss_pred hh-cceEEEeeCCeeeeccCChhH
Q 008771 321 QL-CTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 321 ~~-~d~i~~l~~g~~~~~~G~~~~ 343 (554)
.+ ||+|++|++|++ .+.|++++
T Consensus 209 ~~~~d~i~~l~~G~i-~~~g~~~~ 231 (243)
T TIGR01978 209 YIKPDYVHVLLDGRI-VKSGDVEL 231 (243)
T ss_pred hhcCCeEEEEeCCEE-EEecCHHH
Confidence 98 899999999987 45676654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-43 Score=349.61 Aligned_cols=210 Identities=25% Similarity=0.389 Sum_probs=174.7
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----c---------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----M--------- 161 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----~--------- 161 (554)
++|+++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 46999999999988889999999999999999999999999999999999999999999998854 1
Q ss_pred -----eEEEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCccc
Q 008771 162 -----KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (554)
Q Consensus 162 -----~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (554)
.++|++|++. +++..|+.+|+...+... . ......
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~---------------~-----------------------~~~~~~ 126 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAV---------------G-----------------------ARHYGD 126 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHh---------------c-----------------------cCcHHH
Confidence 4899999974 445678888774321000 0 000012
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEE
Q 008771 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMV 310 (554)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvI 310 (554)
...++.++++.+|+.....++.+.+|||||+|||+|||||+.+|++|||||||++||+.+..++.+.++ ++|.|||
T Consensus 127 ~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 206 (258)
T PRK11701 127 IRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVV 206 (258)
T ss_pred HHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 244567788889986446688999999999999999999999999999999999999999999988764 2489999
Q ss_pred EEecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+||||++++..+||+|++|++|++. +.|..+++
T Consensus 207 ~isH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~ 239 (258)
T PRK11701 207 IVTHDLAVARLLAHRLLVMKQGRVV-ESGLTDQV 239 (258)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999999974 56665544
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-44 Score=322.31 Aligned_cols=209 Identities=23% Similarity=0.364 Sum_probs=178.7
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc--------eEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~--------~i~~v~Q 168 (554)
+|.+++|+++|+..+ =.++++|+.||++||+||||||||||+++|+|++.|.+|+|.++|.+. -|+++||
T Consensus 1 ~l~L~~V~~~y~~~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQ 78 (231)
T COG3840 1 MLALDDVRFSYGHLP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78 (231)
T ss_pred CccccceEEeeCcce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhh
Confidence 367899999998654 236899999999999999999999999999999999999999998653 4999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
+.++|..+||.+|+..+....+.. ...-.++++.++..+|+
T Consensus 79 EnNLFaHLtV~qNigLGl~P~LkL---------------------------------------~a~~r~~v~~aa~~vGl 119 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGLSPGLKL---------------------------------------NAEQREKVEAAAAQVGL 119 (231)
T ss_pred ccccchhhhhhhhhcccCCccccc---------------------------------------CHHHHHHHHHHHHHhCh
Confidence 999999999999997654321110 01234578888999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIiisHd~~~l~~~~d 324 (554)
. .+.+|.|.+|||||||||+|||+|+.+-+||+||||+++|||.-+..+..++ .+.+.|++||||.++.+.++++
T Consensus 120 ~-~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~ 198 (231)
T COG3840 120 A-GFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIAD 198 (231)
T ss_pred h-hHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhh
Confidence 6 5779999999999999999999999999999999999999998877766554 4579999999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHHHHHH
Q 008771 325 KIVETEMGVSRTYEGNYSQYVLEK 348 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~~~~~ 348 (554)
+++++++|++ .+.|..++++..+
T Consensus 199 ~~~fl~~Gri-~~~g~~~~~~~~~ 221 (231)
T COG3840 199 RVVFLDNGRI-AAQGSTQELLSGK 221 (231)
T ss_pred ceEEEeCCEE-EeeccHHHHhccC
Confidence 9999999997 6788877776654
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=349.40 Aligned_cols=208 Identities=25% Similarity=0.424 Sum_probs=176.2
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------------
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------- 160 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------------- 160 (554)
|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 578999999998899999999999999999999999999999999999999999999988742
Q ss_pred ------ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCccc
Q 008771 161 ------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (554)
Q Consensus 161 ------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (554)
..|+|++|++.+++..|+.+|+....... . ......
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~---------------~-----------------------~~~~~~ 122 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV---------------L-----------------------GMARAE 122 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh---------------c-----------------------CCCHHH
Confidence 24999999998888899999985321000 0 001112
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEE
Q 008771 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (554)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvI 310 (554)
....+.++++.+|+. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|++ .|.|+|
T Consensus 123 ~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii 201 (252)
T TIGR03005 123 AEKRAMELLDMVGLA-DKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTML 201 (252)
T ss_pred HHHHHHHHHHHcCCh-hHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 334567788889986 456888999999999999999999999999999999999999999999887753 489999
Q ss_pred EEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+||||++++..+||++++|++|++. ..|++.++.
T Consensus 202 ivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 235 (252)
T TIGR03005 202 LVTHEMGFAREFADRVCFFDKGRIV-EQGKPDEIF 235 (252)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999974 567776654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=388.21 Aligned_cols=207 Identities=30% Similarity=0.499 Sum_probs=180.0
Q ss_pred CCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccc--
Q 008771 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE-- 171 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~-- 171 (554)
...+|+++||++.|+++.+|+|+||+|.+|+++||+||||||||||+|+|+|+++|++|+|.+++ ...|||++|+..
T Consensus 309 ~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~-~~~igy~~Q~~~~~ 387 (638)
T PRK10636 309 PNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK-GIKLGYFAQHQLEF 387 (638)
T ss_pred CCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC-CEEEEEecCcchhh
Confidence 45679999999999988999999999999999999999999999999999999999999999863 357999999752
Q ss_pred cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcc
Q 008771 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (554)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (554)
+....|+.+++... .....+..+..+|..+||...
T Consensus 388 l~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~~L~~~~l~~~ 422 (638)
T PRK10636 388 LRADESPLQHLARL---------------------------------------------APQELEQKLRDYLGGFGFQGD 422 (638)
T ss_pred CCccchHHHHHHHh---------------------------------------------CchhhHHHHHHHHHHcCCChh
Confidence 33344555443100 001123457788999999765
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeC
Q 008771 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331 (554)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~ 331 (554)
..++++.+|||||||||+||++|+.+|+||||||||||||+.++..|.++|+++++|||+||||++++..+||+|++|++
T Consensus 423 ~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~ 502 (638)
T PRK10636 423 KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHD 502 (638)
T ss_pred HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 67899999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred CeeeeccCChhHHHH
Q 008771 332 GVSRTYEGNYSQYVL 346 (554)
Q Consensus 332 g~~~~~~G~~~~~~~ 346 (554)
|++..|.|+|++|..
T Consensus 503 G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 503 GKVEPFDGDLEDYQQ 517 (638)
T ss_pred CEEEEcCCCHHHHHH
Confidence 999889999999964
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=390.81 Aligned_cols=256 Identities=23% Similarity=0.369 Sum_probs=187.6
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCCe--eeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV--TVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~~--~~l~~isl~i~~Ge~ 125 (554)
+++....++++++.+...+..+++.+.+....+. ........+.|+++||+|+|+.. ++|+|+||+|++||+
T Consensus 428 ~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~------~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~ 501 (709)
T COG2274 428 RLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT------LIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEK 501 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc------cccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCE
Confidence 3444444444555555555556666666433221 11222455679999999999754 699999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
+||||+||||||||+|+|+|+++|++|+|.+||.+. .||||+|++.+ ++.|++||+..+..+..
T Consensus 502 vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~L-f~gSI~eNi~l~~p~~~----- 575 (709)
T COG2274 502 VAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFL-FSGSIRENIALGNPEAT----- 575 (709)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchh-hcCcHHHHHhcCCCCCC-----
Confidence 999999999999999999999999999999999763 59999999877 67799999975421100
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 275 (554)
.+++ ...+.. ..+.+.+..+- +|++... ...-..||||||||++|||||+
T Consensus 576 ~e~i------------------------~~A~~~---ag~~~fI~~lP--~gy~t~v-~E~G~~LSGGQrQrlalARaLl 625 (709)
T COG2274 576 DEEI------------------------IEAAQL---AGAHEFIENLP--MGYDTPV-GEGGANLSGGQRQRLALARALL 625 (709)
T ss_pred HHHH------------------------HHHHHH---hCcHHHHHhcc--ccccccc-ccCCCCCCHHHHHHHHHHHHhc
Confidence 0000 000000 01111111111 1222211 2223689999999999999999
Q ss_pred cCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
.+|+|||||||||+||+.+.+.+.+.|.+ .|+|+|+|||++..+. .||+|++|++|++ .-.|+.++.+..
T Consensus 626 ~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~-~adrIiVl~~Gki-v~~gs~~ell~~ 697 (709)
T COG2274 626 SKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR-SADRIIVLDQGKI-VEQGSHEELLAQ 697 (709)
T ss_pred cCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh-hccEEEEccCCce-eccCCHHHHHHh
Confidence 99999999999999999999999999876 4699999999999996 5999999999998 567888877665
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-43 Score=351.82 Aligned_cols=212 Identities=17% Similarity=0.374 Sum_probs=175.1
Q ss_pred ccEEEEeEEEEeCC---------eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------
Q 008771 96 SGVKLENISKSYKG---------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------ 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~---------~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------ 160 (554)
++|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 46999999999962 469999999999999999999999999999999999999999999998742
Q ss_pred ----ceEEEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCccc
Q 008771 161 ----MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (554)
Q Consensus 161 ----~~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (554)
..|+|+||++. +++..|+.+++....... ..+....
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--------------------------------------~~~~~~~ 124 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLN--------------------------------------TDLEPEQ 124 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhc--------------------------------------cCCCHHH
Confidence 25999999975 445668887764321000 0001112
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEE
Q 008771 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (554)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvI 310 (554)
..+.+.++++.+|+.....++.+.+|||||+|||+||+||+.+|+||||||||++||+.+++.+.+.|.+ .|.|||
T Consensus 125 ~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvi 204 (267)
T PRK15112 125 REKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYI 204 (267)
T ss_pred HHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEE
Confidence 3446778899999965566788899999999999999999999999999999999999999999888754 488999
Q ss_pred EEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+||||++++..+||+|++|++|++. ..|++.++..
T Consensus 205 ivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 239 (267)
T PRK15112 205 YVTQHLGMMKHISDQVLVMHQGEVV-ERGSTADVLA 239 (267)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEEE-ecCCHHHHhc
Confidence 9999999999999999999999974 5677665543
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=346.77 Aligned_cols=211 Identities=21% Similarity=0.280 Sum_probs=176.1
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC----------c
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----------M 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~----------~ 161 (554)
+|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+ .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR 82 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence 58999999999988899999999999999999999999999999999999974 79999998753 2
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
.|+|++|++.+++..||.+|+...... ... ........+.+.+
T Consensus 83 ~i~~v~q~~~~~~~~tv~enl~~~~~~---------------~~~----------------------~~~~~~~~~~~~~ 125 (250)
T PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGLKL---------------NRL----------------------VKSKKELQERVRW 125 (250)
T ss_pred cEEEEeccCccCCCCcHHHHHHHHHHh---------------ccc----------------------cCCHHHHHHHHHH
Confidence 599999999888889999998532110 000 0001123345677
Q ss_pred HhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCH
Q 008771 242 LMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDR 316 (554)
Q Consensus 242 ~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~ 316 (554)
+++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|++ .+.|+|+||||+
T Consensus 126 ~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~ 205 (250)
T PRK14247 126 ALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFP 205 (250)
T ss_pred HHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 888888753 346888999999999999999999999999999999999999999999988754 378999999999
Q ss_pred HHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 317 AFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 317 ~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+++.++||+|++|++|++ ...|+.+++.
T Consensus 206 ~~~~~~~d~i~~l~~G~i-~~~g~~~~~~ 233 (250)
T PRK14247 206 QQAARISDYVAFLYKGQI-VEWGPTREVF 233 (250)
T ss_pred HHHHHhcCEEEEEECCeE-EEECCHHHHH
Confidence 999999999999999987 4567766553
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=350.93 Aligned_cols=217 Identities=21% Similarity=0.370 Sum_probs=179.3
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC---ceeEEEcCCCc----------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSNM---------- 161 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~---~G~I~~~~~~~---------- 161 (554)
+++|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 2 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred CcEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 35799999999999889999999999999999999999999999999999999986 49999988431
Q ss_pred -----eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH
Q 008771 162 -----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (554)
Q Consensus 162 -----~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (554)
.++|+||++.+++..||.+|+......... ... ... ........
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~--------------------~~~----------~~~-~~~~~~~~ 130 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTP--------------------FWR----------TCF-SWFTREQK 130 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhccccc--------------------chh----------hhc-ccccHHHH
Confidence 489999999888888999998532100000 000 000 00011234
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEE
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII 312 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIii 312 (554)
.++.++++.+|+. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.+++.|.+.|++ .|.|||+|
T Consensus 131 ~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~ 209 (262)
T PRK09984 131 QRALQALTRVGMV-HFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVT 209 (262)
T ss_pred HHHHHHHHHcCCH-HHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5678889999996 467889999999999999999999999999999999999999999999888753 47899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|||++++..+||+|++|++|++ .+.|+++++
T Consensus 210 tH~~~~~~~~~d~i~~l~~g~i-~~~g~~~~~ 240 (262)
T PRK09984 210 LHQVDYALRYCERIVALRQGHV-FYDGSSQQF 240 (262)
T ss_pred eCCHHHHHHhCCEEEEEECCEE-EEeCCHHHh
Confidence 9999999999999999999997 577888765
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=345.34 Aligned_cols=203 Identities=23% Similarity=0.337 Sum_probs=168.0
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEEEE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~~v 166 (554)
|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence 578999999998899999999999999999999999999999999999999999999998732 259999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
+|++.+++..|+.+|+....... . ......+.++++.+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~-----------------------------------------~-~~~~~~~~~~l~~~ 118 (230)
T TIGR03410 81 PQGREIFPRLTVEENLLTGLAAL-----------------------------------------P-RRSRKIPDEIYELF 118 (230)
T ss_pred ccCCcccCCCcHHHHHHHHHHhc-----------------------------------------C-cchHHHHHHHHHHH
Confidence 99998888889999985321100 0 00011223444444
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhh
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~ 322 (554)
++-....++++.+|||||+||++|||||+.+|++|||||||++||+.++.++.+.|.+ .+.|+|+||||++++..+
T Consensus 119 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 198 (230)
T TIGR03410 119 PVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFAREL 198 (230)
T ss_pred HhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHh
Confidence 4212345788999999999999999999999999999999999999999999888753 378999999999999999
Q ss_pred cceEEEeeCCeeeeccCChhH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~ 343 (554)
||+|+++++|++. ..|+.++
T Consensus 199 ~d~v~~l~~g~i~-~~~~~~~ 218 (230)
T TIGR03410 199 ADRYYVMERGRVV-ASGAGDE 218 (230)
T ss_pred CCEEEEEECCEEE-EECCHHH
Confidence 9999999999874 5566554
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-43 Score=353.47 Aligned_cols=210 Identities=23% Similarity=0.386 Sum_probs=177.1
Q ss_pred ccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc------------e
Q 008771 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------K 162 (554)
Q Consensus 96 ~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------------~ 162 (554)
++|+++|++++|+ ++.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 4699999999996 57899999999999999999999999999999999999999999999988432 4
Q ss_pred EEEEeccccc-ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 163 IAFLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 163 i~~v~Q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
|+|+||++.. .+..|+.+|+...... ..........++..
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~ 124 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVN---------------------------------------LKLPEDEVRKRVDN 124 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHH---------------------------------------cCCCHHHHHHHHHH
Confidence 8999999742 3567999998532100 00111223456778
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~ 317 (554)
+++.+|+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|++ .|.|||++|||++
T Consensus 125 ~l~~~gL~-~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~ 203 (283)
T PRK13636 125 ALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID 203 (283)
T ss_pred HHHHCCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 88999996 467899999999999999999999999999999999999999999988887643 4899999999999
Q ss_pred HHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
++..+||||++|++|++ .+.|+++++..
T Consensus 204 ~~~~~~dri~~l~~G~i-~~~g~~~~~~~ 231 (283)
T PRK13636 204 IVPLYCDNVFVMKEGRV-ILQGNPKEVFA 231 (283)
T ss_pred HHHHhCCEEEEEECCEE-EEeCCHHHHhc
Confidence 99999999999999997 56788776644
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-43 Score=353.38 Aligned_cols=208 Identities=20% Similarity=0.288 Sum_probs=172.6
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc------------eEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------KIA 164 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------------~i~ 164 (554)
+|+++||+++|+++.+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|+
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 48999999999888899999999999999999999999999999999999999999999987532 499
Q ss_pred EEeccccc-ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 165 FLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 165 ~v~Q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
|++|++.. ++..|+.+|+...... ..........++.+++
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l 121 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRN---------------------------------------LGVPEAEITRRVDEAL 121 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHH
Confidence 99999753 3455787776421100 0001112234567788
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~ 320 (554)
+.+|+. +..++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||||++++.
T Consensus 122 ~~~~l~-~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~ 200 (271)
T PRK13638 122 TLVDAQ-HFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIY 200 (271)
T ss_pred HHcCCH-hHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 888885 456888999999999999999999999999999999999999999999888753 4889999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChhHHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
.+||+|++|++|++. +.|+.+++.
T Consensus 201 ~~~d~i~~l~~G~i~-~~g~~~~~~ 224 (271)
T PRK13638 201 EISDAVYVLRQGQIL-THGAPGEVF 224 (271)
T ss_pred HhCCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999874 566665543
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=347.22 Aligned_cols=210 Identities=19% Similarity=0.295 Sum_probs=172.5
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~--------- 160 (554)
++.|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|++. |++|+|.++|.+
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 466999999999988889999999999999999999999999999999999964 689999998743
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|++|++.+++ .||.+|+...... .. ........+
T Consensus 84 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~-----------------------~~~~~~~~~ 124 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFP-KSIFENVAYGLRV---------------NG-----------------------VKDKAYLAE 124 (253)
T ss_pred HHhhcEEEEecCCCCCc-CcHHHHHHHHHHH---------------cC-----------------------CCCHHHHHH
Confidence 25999999988766 5999998532100 00 000011234
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
++.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|
T Consensus 125 ~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~ 204 (253)
T PRK14242 125 RVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIV 204 (253)
T ss_pred HHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 5666777777742 235788899999999999999999999999999999999999999999988754 36899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|||++++.++||+|++|++|++. ..|..+++
T Consensus 205 tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 235 (253)
T PRK14242 205 THNMQQAARVSDVTAFFYMGKLI-EVGPTEQI 235 (253)
T ss_pred EecHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999874 45665544
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=358.96 Aligned_cols=210 Identities=24% Similarity=0.343 Sum_probs=174.6
Q ss_pred cEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC----CCceeEEEcCCCc-------
Q 008771 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE----PDSGNVIKAKSNM------- 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~----p~~G~I~~~~~~~------- 161 (554)
+|+++||++.|+. ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999975 479999999999999999999999999999999999997 4899999988542
Q ss_pred -------eEEEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCc
Q 008771 162 -------KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (554)
Q Consensus 162 -------~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (554)
.|+||||++. +.+.+|+.+++...+.. ......
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~--------------------------------------~~~~~~ 124 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKV--------------------------------------HQGGNK 124 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHH--------------------------------------hcCCCH
Confidence 4999999983 56778888776432100 000111
Q ss_pred ccHHHHHHHHhhhcCCCc--cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCC
Q 008771 233 DTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQD 306 (554)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g 306 (554)
.+..+++.++|+.+||.. ...++++++|||||+|||+|||||+.+|+||||||||++||+.++..+.++|+ +.|
T Consensus 125 ~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g 204 (326)
T PRK11022 125 KTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKEN 204 (326)
T ss_pred HHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 234567888999999964 35688999999999999999999999999999999999999999988888764 358
Q ss_pred CeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 307 VPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 307 ~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
.|+|+||||+.++.++||+|++|++|+++ ..|+..+..
T Consensus 205 ~til~iTHdl~~~~~~adri~vm~~G~iv-e~g~~~~~~ 242 (326)
T PRK11022 205 MALVLITHDLALVAEAAHKIIVMYAGQVV-ETGKAHDIF 242 (326)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 99999999999999999999999999985 456655443
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=357.99 Aligned_cols=214 Identities=20% Similarity=0.351 Sum_probs=177.0
Q ss_pred CCccEEEEeEEEEeC----CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC---ceeEEEcCCC------
Q 008771 94 ISSGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSN------ 160 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~----~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~---~G~I~~~~~~------ 160 (554)
..++|+++||++.|+ ...+|+||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 345799999999994 357999999999999999999999999999999999999996 9999998853
Q ss_pred --------ceEEEEeccc--ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhC
Q 008771 161 --------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230 (554)
Q Consensus 161 --------~~i~~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (554)
..|+||||++ .+++.+|+.+++...+.. ....
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~--------------------------------------~~~~ 130 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLML--------------------------------------HKGM 130 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHH--------------------------------------hcCC
Confidence 2599999998 566778998887532100 0001
Q ss_pred CcccHHHHHHHHhhhcCCCc--cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----c
Q 008771 231 NLDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (554)
Q Consensus 231 ~~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~ 304 (554)
...+...++.++|+.+||+. ...++++++|||||+|||+|||||+.+|++||+||||++||+.++..+.+.|+ +
T Consensus 131 ~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~ 210 (330)
T PRK09473 131 SKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE 210 (330)
T ss_pred CHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH
Confidence 11223456788889999974 23578999999999999999999999999999999999999999998888764 3
Q ss_pred CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 305 ~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
.|.|+|+||||+.++.++||+|++|++|+++ ..|+.+++..
T Consensus 211 ~g~til~iTHdl~~~~~~~Dri~vm~~G~iv-e~g~~~~i~~ 251 (330)
T PRK09473 211 FNTAIIMITHDLGVVAGICDKVLVMYAGRTM-EYGNARDVFY 251 (330)
T ss_pred cCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 4899999999999999999999999999984 5577665543
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=382.81 Aligned_cols=214 Identities=34% Similarity=0.534 Sum_probs=184.3
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccc-ccc
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF-EVS 173 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~-~~~ 173 (554)
.++|+++|+++.|+++.+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ ....|||+||++ .++
T Consensus 322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~-~~~~i~~v~q~~~~~~ 400 (556)
T PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIG-ETVKLAYVDQSRDALD 400 (556)
T ss_pred CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-CceEEEEEeCchhhcC
Confidence 457999999999998899999999999999999999999999999999999999999999985 456799999997 566
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcccc
Q 008771 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (554)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (554)
+..||.+|+...... ......+..+..+++.+|+.....
T Consensus 401 ~~~tv~e~l~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~~l~~~~~ 439 (556)
T PRK11819 401 PNKTVWEEISGGLDI-----------------------------------------IKVGNREIPSRAYVGRFNFKGGDQ 439 (556)
T ss_pred CCCCHHHHHHhhccc-----------------------------------------ccccccHHHHHHHHHhCCCChhHh
Confidence 788999987532100 000000123446788899965456
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeC-C
Q 008771 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM-G 332 (554)
Q Consensus 254 ~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~-g 332 (554)
++++.+|||||||||+||+||+.+|++|||||||+|||+.++.+|.++|++.+.|||+||||++++..+||+|++|++ |
T Consensus 440 ~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g 519 (556)
T PRK11819 440 QKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDS 519 (556)
T ss_pred cCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCC
Confidence 899999999999999999999999999999999999999999999999988767999999999999999999999985 7
Q ss_pred eeeeccCChhHHHHHHHH
Q 008771 333 VSRTYEGNYSQYVLEKAA 350 (554)
Q Consensus 333 ~~~~~~G~~~~~~~~~~~ 350 (554)
.+..|.|+|++|...+++
T Consensus 520 ~~~~~~g~~~~~~~~~~~ 537 (556)
T PRK11819 520 QVEWFEGNFQEYEEDKKR 537 (556)
T ss_pred eEEEecCCHHHHHHHHHH
Confidence 888899999998876543
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=348.05 Aligned_cols=223 Identities=21% Similarity=0.386 Sum_probs=177.6
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~ 164 (554)
.+|+++|+++.|+++++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 36999999999998899999999999999999999999999999999999999999999998743 2489
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|+||++.+++..||.+|+........ +.+........ ... ..........+.++++
T Consensus 84 ~~~q~~~~~~~~tv~enl~~~~~~~~------------------~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~l~ 139 (255)
T PRK11300 84 RTFQHVRLFREMTVIENLLVAQHQQL------------------KTGLFSGLLKT-PAF-----RRAESEALDRAATWLE 139 (255)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccc------------------cchhhhhhccc-ccc-----ccchhHHHHHHHHHHH
Confidence 99999998888999999864311000 00000000000 000 0000112345777888
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---c-CCCeEEEEecCHHHHH
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---K-QDVPMVIISHDRAFLD 320 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~-~g~tvIiisHd~~~l~ 320 (554)
.+|+. ...++++.+||||||||++||+||+.+|++|||||||++||+.++..+.+.|. + .+.|||+||||++++.
T Consensus 140 ~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~ 218 (255)
T PRK11300 140 RVGLL-EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVM 218 (255)
T ss_pred hCChh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH
Confidence 99985 46789999999999999999999999999999999999999999999988874 2 3889999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChhHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
.+||+|++|++|++. +.|+.+++
T Consensus 219 ~~~d~i~~l~~g~i~-~~~~~~~~ 241 (255)
T PRK11300 219 GISDRIYVVNQGTPL-ANGTPEEI 241 (255)
T ss_pred HhCCEEEEEECCeEE-ecCCHHHH
Confidence 999999999999974 56665544
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=348.05 Aligned_cols=211 Identities=27% Similarity=0.354 Sum_probs=176.1
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~v 166 (554)
+|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 5899999999998899999999999999999999999999999999999999999999998743 149999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
||++.+++..|+.+|+......... .. .........++.++++.+
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~--------------------~~---------------~~~~~~~~~~~~~~l~~~ 126 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLS--------------------LW---------------GRLSAEDNARVNQAMEQT 126 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhh--------------------hc---------------cCCCHHHHHHHHHHHHHc
Confidence 9998877778999987532100000 00 000112234567788888
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhc
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~ 323 (554)
|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.+++.+.++|++ .+.|||++|||++++.++|
T Consensus 127 ~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~ 205 (255)
T PRK11231 127 RIN-HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYC 205 (255)
T ss_pred CCH-HHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhc
Confidence 985 456889999999999999999999999999999999999999999999888753 4889999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|+|++|++|++. +.|+++++
T Consensus 206 d~i~~l~~G~i~-~~~~~~~~ 225 (255)
T PRK11231 206 DHLVVLANGHVM-AQGTPEEV 225 (255)
T ss_pred CEEEEEECCeEE-EEcCHHHh
Confidence 999999999874 55666554
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-43 Score=362.52 Aligned_cols=201 Identities=24% Similarity=0.322 Sum_probs=173.3
Q ss_pred EEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------ceEEEEeccc
Q 008771 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLSQEF 170 (554)
Q Consensus 105 ~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~~i~~v~Q~~ 170 (554)
|.|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+||||++
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 46888899999999999999999999999999999999999999999999998842 2599999999
Q ss_pred ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc
Q 008771 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (554)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (554)
.+++.+||.+|+...... ......+..+++.++++.+||.
T Consensus 81 ~l~~~~TV~eNi~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~vgL~- 120 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPEL---------------------------------------LGWPEQERKEKALELLKLVGLE- 120 (363)
T ss_pred cCCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHhcCCc-
Confidence 999999999998642100 0111223456788899999996
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcceE
Q 008771 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d~i 326 (554)
...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+. +.++|||+||||++++..+||+|
T Consensus 121 ~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI 200 (363)
T TIGR01186 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRI 200 (363)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 57799999999999999999999999999999999999999999999988764 34899999999999999999999
Q ss_pred EEeeCCeeeeccCChhHHHH
Q 008771 327 VETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 327 ~~l~~g~~~~~~G~~~~~~~ 346 (554)
++|++|++ ...|...++..
T Consensus 201 ~vl~~G~i-v~~g~~~ei~~ 219 (363)
T TIGR01186 201 VIMKAGEI-VQVGTPDEILR 219 (363)
T ss_pred EEEeCCEE-EeeCCHHHHHh
Confidence 99999987 45677666554
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=345.98 Aligned_cols=211 Identities=20% Similarity=0.248 Sum_probs=173.8
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC----------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~---------- 160 (554)
.+|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 468999999999888899999999999999999999999999999999999987 49999998743
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..|+|++|++.+++..||.+|+...... ... .........+
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~---------------~~~----------------------~~~~~~~~~~ 125 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKL---------------NGL----------------------VKSKKELDER 125 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHh---------------cCc----------------------cCCHHHHHHH
Confidence 2489999999888888999998532100 000 0001122334
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||+||
T Consensus 126 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~s 205 (253)
T PRK14267 126 VEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVT 205 (253)
T ss_pred HHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEE
Confidence 566777777642 245788999999999999999999999999999999999999999999888754 368999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||++++..+||+|++|++|++. ..|+..++
T Consensus 206 H~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 235 (253)
T PRK14267 206 HSPAQAARVSDYVAFLYLGKLI-EVGPTRKV 235 (253)
T ss_pred CCHHHHHhhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999974 55665544
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=352.29 Aligned_cols=208 Identities=23% Similarity=0.324 Sum_probs=172.2
Q ss_pred cEEEEeEEEEeCC-----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------
Q 008771 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~-----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------- 160 (554)
.|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 3899999999974 369999999999999999999999999999999999999999999998742
Q ss_pred ---ceEEEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH
Q 008771 161 ---MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (554)
Q Consensus 161 ---~~i~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (554)
..|+|++|++. .++..||.+|+...... .....+...
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~ 122 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQN---------------------------------------FGVSQEEAE 122 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHH---------------------------------------cCCCHHHHH
Confidence 24899999973 23446999987532100 000112233
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEe
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIIS 313 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiis 313 (554)
.++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||+||
T Consensus 123 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 202 (280)
T PRK13649 123 ALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVT 202 (280)
T ss_pred HHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 45677888899864456889999999999999999999999999999999999999999999888753 488999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||++++..+||+|++|++|++. +.|..+++
T Consensus 203 H~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 232 (280)
T PRK13649 203 HLMDDVANYADFVYVLEKGKLV-LSGKPKDI 232 (280)
T ss_pred ccHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999875 44665544
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=349.81 Aligned_cols=212 Identities=25% Similarity=0.376 Sum_probs=176.0
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~ 165 (554)
.+|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|+|
T Consensus 10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred ceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 469999999999988999999999999999999999999999999999999999999999987432 4999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.+++..|+.+|+....... ... . .......+.++..+++.
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~--------------~~~------~---------------~~~~~~~~~~~~~~l~~ 134 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIGRYPW--------------HGA------L---------------GRFGAADREKVEEAISL 134 (265)
T ss_pred eccCCCCCCCccHHHHHHhCcccc--------------ccc------c---------------cCCCHHHHHHHHHHHHH
Confidence 999988878889999975321000 000 0 00001123456778888
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~ 321 (554)
+|+. ...++++.+|||||+|||+|||||+.+|+||||||||++||+.++..+.++|.+ .|.|||+||||++++.+
T Consensus 135 ~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~ 213 (265)
T PRK10575 135 VGLK-PLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAAR 213 (265)
T ss_pred cCCH-HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 9986 467889999999999999999999999999999999999999999888887642 48999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+||+|++|++|++. ..|..+++
T Consensus 214 ~~d~i~~l~~G~i~-~~~~~~~~ 235 (265)
T PRK10575 214 YCDYLVALRGGEMI-AQGTPAEL 235 (265)
T ss_pred hCCEEEEEECCeEE-EecCHHHh
Confidence 99999999999974 55655443
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-43 Score=352.33 Aligned_cols=206 Identities=27% Similarity=0.345 Sum_probs=174.5
Q ss_pred EEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------ceEE
Q 008771 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIA 164 (554)
Q Consensus 99 ~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~~i~ 164 (554)
.++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence 56799999999999999999999999999999999999999999999999999999998732 2599
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|++|++.+++..||.+|+...... ..........++.++++
T Consensus 106 ~v~q~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~ 146 (269)
T cd03294 106 MVFQSFALLPHRTVLENVAFGLEV---------------------------------------QGVPRAEREERAAEALE 146 (269)
T ss_pred EEecCcccCCCCcHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHH
Confidence 999999888889999998532100 00011122345777889
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHH
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~ 320 (554)
.+|+. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.+.+ .|.|||++|||++++.
T Consensus 147 ~~~l~-~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~ 225 (269)
T cd03294 147 LVGLE-GWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEAL 225 (269)
T ss_pred HcCCH-hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 99986 456889999999999999999999999999999999999999999999887643 3799999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChhHHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
++||+|++|++|++. ..|+.+++.
T Consensus 226 ~~~d~v~~l~~G~i~-~~g~~~~~~ 249 (269)
T cd03294 226 RLGDRIAIMKDGRLV-QVGTPEEIL 249 (269)
T ss_pred HhcCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999874 456655543
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=351.95 Aligned_cols=208 Identities=24% Similarity=0.384 Sum_probs=174.8
Q ss_pred cEEEEeEEEEeCC---eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eE
Q 008771 97 GVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (554)
Q Consensus 97 ~i~~~~ls~~y~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i 163 (554)
+|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 5899999999963 4699999999999999999999999999999999999999999999988532 58
Q ss_pred EEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 164 ~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
+|++|++. .++..||.+|+...... ..........++.++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~~~~~ 124 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLEN---------------------------------------KGIPHEEMKERVNEA 124 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHh---------------------------------------CCCCHHHHHHHHHHH
Confidence 99999984 56678999998532100 001122334567888
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~ 318 (554)
++.+|+. ...++.+.+|||||+|||+|||||+.+|++|||||||++||+.++..+.+.+++ .|.|||+||||+++
T Consensus 125 l~~~gL~-~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~ 203 (279)
T PRK13650 125 LELVGMQ-DFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE 203 (279)
T ss_pred HHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 9999996 567899999999999999999999999999999999999999999998887642 48999999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+. .||+|++|++|++. ..|+..++..
T Consensus 204 ~~-~~dri~~l~~G~i~-~~g~~~~~~~ 229 (279)
T PRK13650 204 VA-LSDRVLVMKNGQVE-STSTPRELFS 229 (279)
T ss_pred HH-hCCEEEEEECCEEE-EECCHHHHHc
Confidence 95 79999999999974 4677665443
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=346.17 Aligned_cols=208 Identities=22% Similarity=0.290 Sum_probs=172.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC----------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~---------- 160 (554)
++|+++|+++.|+++++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 11 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 90 (258)
T PRK14268 11 PQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVE 90 (258)
T ss_pred eeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHH
Confidence 469999999999988899999999999999999999999999999999999975 89999997743
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..++|++|++.+++ .|+.+|+...... . .........+
T Consensus 91 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~------------------------~~~~~~~~~~ 130 (258)
T PRK14268 91 LRKNVGMVFQKPNPFP-MSIYDNVAYGPRI---------------H------------------------GANKKDLDGV 130 (258)
T ss_pred HhhhEEEEecCCccCc-ccHHHHHHHHHHH---------------c------------------------CCCHHHHHHH
Confidence 24999999988766 8999998532100 0 0001122345
Q ss_pred HHHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+.++++.+|+. ....++++.+|||||+|||+|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||+||
T Consensus 131 ~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivs 210 (258)
T PRK14268 131 VENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVT 210 (258)
T ss_pred HHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEE
Confidence 66677777773 2345788999999999999999999999999999999999999999999888754 378999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||++++.++||+|++|++|++. +.|...++
T Consensus 211 H~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 240 (258)
T PRK14268 211 HNMQQAARISDYTGFFLMGELI-EFGQTRQI 240 (258)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999974 55665544
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=349.16 Aligned_cols=212 Identities=24% Similarity=0.316 Sum_probs=176.8
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~ 165 (554)
..|+++||+++|+++.+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|
T Consensus 6 ~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (265)
T PRK10253 6 ARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGL 85 (265)
T ss_pred cEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEE
Confidence 45999999999998899999999999999999999999999999999999999999999998753 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
+||++.+++..|+.+|+........ . .. .........++.++++.
T Consensus 86 v~q~~~~~~~~tv~~~~~~~~~~~~--------------~------~~---------------~~~~~~~~~~~~~~l~~ 130 (265)
T PRK10253 86 LAQNATTPGDITVQELVARGRYPHQ--------------P------LF---------------TRWRKEDEEAVTKAMQA 130 (265)
T ss_pred eeccCcCCCCCcHHHHHHhCccccc--------------c------cc---------------cCCCHHHHHHHHHHHHH
Confidence 9999988888899998753210000 0 00 00001123456778888
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~ 321 (554)
+|+. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|.+ .+.|||++|||++++.+
T Consensus 131 ~~l~-~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~ 209 (265)
T PRK10253 131 TGIT-HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACR 209 (265)
T ss_pred cCCH-HHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 9986 466899999999999999999999999999999999999999999999887743 48899999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+||+|++|++|++. +.|...++
T Consensus 210 ~~d~i~~l~~G~i~-~~g~~~~~ 231 (265)
T PRK10253 210 YASHLIALREGKIV-AQGAPKEI 231 (265)
T ss_pred hCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999974 55665543
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=337.87 Aligned_cols=196 Identities=24% Similarity=0.361 Sum_probs=167.0
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEecc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (554)
|+++|++++|+++.. |+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 i~~~~l~~~~~~~~~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 78 (211)
T cd03298 1 VRLDKIRFSYGEQPM--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78 (211)
T ss_pred CEEEeEEEEeCCEec--ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecc
Confidence 478999999987643 9999999999999999999999999999999999999999998753 259999999
Q ss_pred cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
+.+++..|+.+|+........ . .....+.++.++++.+|+.
T Consensus 79 ~~~~~~~tv~enl~~~~~~~~--------------------------------------~-~~~~~~~~~~~~l~~~~l~ 119 (211)
T cd03298 79 NNLFAHLTVEQNVGLGLSPGL--------------------------------------K-LTAEDRQAIEVALARVGLA 119 (211)
T ss_pred cccCCCCcHHHHHhccccccc--------------------------------------C-ccHHHHHHHHHHHHHcCCH
Confidence 988888899999853211000 0 0011234577788899986
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcce
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~ 325 (554)
...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||+||||++++..+||+
T Consensus 120 -~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 198 (211)
T cd03298 120 -GLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQR 198 (211)
T ss_pred -HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCE
Confidence 456888999999999999999999999999999999999999999999888753 489999999999999999999
Q ss_pred EEEeeCCeee
Q 008771 326 IVETEMGVSR 335 (554)
Q Consensus 326 i~~l~~g~~~ 335 (554)
|++|++|++.
T Consensus 199 i~~l~~G~i~ 208 (211)
T cd03298 199 VVFLDNGRIA 208 (211)
T ss_pred EEEEECCEEe
Confidence 9999999874
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=343.64 Aligned_cols=209 Identities=22% Similarity=0.375 Sum_probs=175.7
Q ss_pred EEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-C----CceeEEEcCCC--------
Q 008771 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-P----DSGNVIKAKSN-------- 160 (554)
Q Consensus 98 i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-p----~~G~I~~~~~~-------- 160 (554)
++++||+.+|.. ..+++||||+|++||++||||+|||||||+.+.|+|+++ | .+|+|.++|.+
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 789999999953 479999999999999999999999999999999999998 4 57999999863
Q ss_pred ------ceEEEEeccc--ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhC-C
Q 008771 161 ------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV-N 231 (554)
Q Consensus 161 ------~~i~~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 231 (554)
..|+|+||++ .+.|..||.+.+...+... ... .
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h--------------------------------------~~~~~ 123 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH--------------------------------------GKGLS 123 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHh--------------------------------------hcchh
Confidence 2699999998 4556778877765432110 001 1
Q ss_pred cccHHHHHHHHhhhcCCCcc--ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cC
Q 008771 232 LDTLDAKVSKLMPELGFTAD--DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQ 305 (554)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~~--~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~ 305 (554)
..+..+++.++|+.+||+.. ..+.+|++|||||+|||.||.||+.+|++||.||||++||+.....+.++|+ +.
T Consensus 124 ~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~ 203 (316)
T COG0444 124 KKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREK 203 (316)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhc
Confidence 23456788999999999865 6799999999999999999999999999999999999999999888887764 47
Q ss_pred CCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 306 g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|.|+|+||||+..+.++||||++|..|+++.. |+..++.
T Consensus 204 ~~aiilITHDl~vva~~aDri~VMYaG~iVE~-g~~~~i~ 242 (316)
T COG0444 204 GTALILITHDLGVVAEIADRVAVMYAGRIVEE-GPVEEIF 242 (316)
T ss_pred CCEEEEEeCCHHHHHHhcceEEEEECcEEEEe-CCHHHHh
Confidence 99999999999999999999999999998654 5554443
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=343.90 Aligned_cols=207 Identities=22% Similarity=0.325 Sum_probs=170.2
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~ 164 (554)
++|+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 36999999999988889999999999999999999999999999999999999999999998743 2499
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|++|++.+++..||.+|+....... ........+.++++
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~-----------------------------------------~~~~~~~~~~~~l~ 122 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFA-----------------------------------------ERDQFQERIKWVYE 122 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhcc-----------------------------------------ChhHHHHHHHHHHH
Confidence 9999998887889999985421000 00001122333444
Q ss_pred hc-CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 008771 245 EL-GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (554)
Q Consensus 245 ~l-gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~ 320 (554)
.+ ++. +..++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|+ +.|.|||++|||++++.
T Consensus 123 ~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (237)
T PRK11614 123 LFPRLH-ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQAL 201 (237)
T ss_pred HHHHHH-HHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHH
Confidence 44 232 23467789999999999999999999999999999999999999999888764 35899999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChhHHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
++||+|++|++|++ .+.|+.++..
T Consensus 202 ~~~d~i~~l~~G~i-~~~~~~~~~~ 225 (237)
T PRK11614 202 KLADRGYVLENGHV-VLEDTGDALL 225 (237)
T ss_pred hhCCEEEEEeCCEE-EeeCCHHHHh
Confidence 99999999999987 4667765543
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=344.98 Aligned_cols=211 Identities=25% Similarity=0.397 Sum_probs=173.5
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------- 160 (554)
++|+++||++.|++..+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 36999999999988889999999999999999999999999999999999999999999998743
Q ss_pred ----ceEEEEeccccc--ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCccc
Q 008771 161 ----MKIAFLSQEFEV--SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (554)
Q Consensus 161 ----~~i~~v~Q~~~~--~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (554)
..|+|++|++.. .+..|+.+|+...+.. .. ......
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~--------------~~------------------------~~~~~~ 123 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMA--------------IG------------------------ARHYGN 123 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHH--------------hc------------------------ccchHH
Confidence 138999999753 3456777776421100 00 000011
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEE
Q 008771 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (554)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvI 310 (554)
.+..+.++++.+|+.....++.+..|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|+|
T Consensus 124 ~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii 203 (253)
T TIGR02323 124 IRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVI 203 (253)
T ss_pred HHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 2346778889999864567889999999999999999999999999999999999999999999887643 489999
Q ss_pred EEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+||||++++..+||++++|++|++. ..|...++.
T Consensus 204 ~vsH~~~~~~~~~d~~~~l~~G~i~-~~~~~~~~~ 237 (253)
T TIGR02323 204 IVTHDLGVARLLAQRLLVMQQGRVV-ESGLTDQVL 237 (253)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEEE-EECCHHHHh
Confidence 9999999999999999999999974 556655543
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=357.85 Aligned_cols=216 Identities=21% Similarity=0.309 Sum_probs=174.5
Q ss_pred ccEEEEeEEEEe----CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC----CCceeEEEcCCCc------
Q 008771 96 SGVKLENISKSY----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE----PDSGNVIKAKSNM------ 161 (554)
Q Consensus 96 ~~i~~~~ls~~y----~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~----p~~G~I~~~~~~~------ 161 (554)
++|+++||+++| +...+|+||||+|.+||++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 368999999999 34679999999999999999999999999999999999996 5899999987431
Q ss_pred --------eEEEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCC
Q 008771 162 --------KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (554)
Q Consensus 162 --------~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (554)
.|+||||++. +.+..||.+++...+.... .. +.. ...
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~------------~~---------~~~------------~~~ 128 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWT------------YK---------GRW------------WQR 128 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhh------------cc---------ccc------------ccc
Confidence 5999999986 4567789888753210000 00 000 000
Q ss_pred cccHHHHHHHHhhhcCCCc--cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----C
Q 008771 232 LDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----Q 305 (554)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~ 305 (554)
......++.++|+.+||.. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++.++.++|++ .
T Consensus 129 ~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~ 208 (330)
T PRK15093 129 FGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNN 208 (330)
T ss_pred HHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 0123456788999999974 346889999999999999999999999999999999999999999998888753 5
Q ss_pred CCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 306 g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|.||||||||++++.++||+|++|++|+++ ..|+..++.
T Consensus 209 g~tii~itHdl~~v~~~~dri~vm~~G~iv-e~g~~~~i~ 247 (330)
T PRK15093 209 NTTILLISHDLQMLSQWADKINVLYCGQTV-ETAPSKELV 247 (330)
T ss_pred CCEEEEEECCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 899999999999999999999999999984 556655543
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=349.82 Aligned_cols=210 Identities=22% Similarity=0.380 Sum_probs=176.3
Q ss_pred ccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEE
Q 008771 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~ 164 (554)
.+|+++|++++|+ +..+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|... .++
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 3589999999996 45799999999999999999999999999999999999999999999987532 499
Q ss_pred EEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 165 FLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 165 ~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
|++|++. .++..||.+|+...... .........+++.+++
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l 122 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPIN---------------------------------------LGLDEETVAHRVSSAL 122 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHH---------------------------------------cCCCHHHHHHHHHHHH
Confidence 9999974 33567999987522100 0011122344677889
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFL 319 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l 319 (554)
+.+|+. ...++.+.+||||||||++|||||+.+|++|||||||++||+.++..+.+++++ .|.|||++|||++++
T Consensus 123 ~~~~l~-~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~ 201 (277)
T PRK13652 123 HMLGLE-ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLV 201 (277)
T ss_pred HHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 999996 567889999999999999999999999999999999999999999999887753 489999999999999
Q ss_pred HhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 320 DQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
.++||+|++|++|++ .+.|+.+++..
T Consensus 202 ~~~~drv~~l~~G~i-~~~g~~~~~~~ 227 (277)
T PRK13652 202 PEMADYIYVMDKGRI-VAYGTVEEIFL 227 (277)
T ss_pred HHhCCEEEEEECCeE-EEECCHHHHhc
Confidence 999999999999987 46688776643
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=345.06 Aligned_cols=209 Identities=22% Similarity=0.296 Sum_probs=171.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC----------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~---------- 160 (554)
++|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (254)
T PRK14273 6 AIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILE 85 (254)
T ss_pred ceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHH
Confidence 469999999999888899999999999999999999999999999999999987 58999998742
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..|+|++|++.++ ..||.+|+....... . .......+.+
T Consensus 86 ~~~~i~~v~q~~~~~-~~tv~eni~~~~~~~---------------~-----------------------~~~~~~~~~~ 126 (254)
T PRK14273 86 LRRKIGMVFQTPNPF-LMSIYDNISYGPKIH---------------G-----------------------TKDKKKLDEI 126 (254)
T ss_pred HhhceEEEeeccccc-cCcHHHHHHHHHHhc---------------C-----------------------CCCHHHHHHH
Confidence 2499999998876 489999985321000 0 0001122344
Q ss_pred HHHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+.++++.+|+. .+..++.+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .+.|||+||
T Consensus 127 ~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~s 206 (254)
T PRK14273 127 VEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVT 206 (254)
T ss_pred HHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 56666777763 1345788999999999999999999999999999999999999999999888754 368999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||++++.++||+|++|++|++. ..|...++
T Consensus 207 H~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 236 (254)
T PRK14273 207 HNMQQAGRISDRTAFFLNGCIE-EESSTDEL 236 (254)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999974 45665544
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=345.10 Aligned_cols=210 Identities=21% Similarity=0.325 Sum_probs=173.9
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCCc----------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSNM---------- 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~~---------- 161 (554)
.|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 58999999999988999999999999999999999999999999999999974 799999987432
Q ss_pred --eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 162 --KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 162 --~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
.|+|++|++.+++..||.+|+...... . ........++++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~---------------~-----------------------~~~~~~~~~~~~ 125 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKL---------------N-----------------------GVRNKKDLDELV 125 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHh---------------c-----------------------CCCCHHHHHHHH
Confidence 499999999888888999998532100 0 000011233456
Q ss_pred HHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 008771 240 SKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (554)
Q Consensus 240 ~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisH 314 (554)
.++++.+|+. ....++.+.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||+|||
T Consensus 126 ~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH 205 (258)
T PRK14241 126 EKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTH 205 (258)
T ss_pred HHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 7778888874 2356788999999999999999999999999999999999999999999888753 3689999999
Q ss_pred CHHHHHhhcceEEEee------CCeeeeccCChhHHH
Q 008771 315 DRAFLDQLCTKIVETE------MGVSRTYEGNYSQYV 345 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~------~g~~~~~~G~~~~~~ 345 (554)
|++++.++||+|++|+ +|++ .+.|+..++.
T Consensus 206 ~~~~~~~~~d~i~~l~~~~~~~~g~i-~~~~~~~~~~ 241 (258)
T PRK14241 206 NMQQAARVSDQTAFFNLEATGKPGRL-VEIDDTEKIF 241 (258)
T ss_pred CHHHHHHhCCEEEEEecccCCCCceE-EecCCHHHHH
Confidence 9999999999999996 6877 4557666553
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=373.24 Aligned_cols=257 Identities=22% Similarity=0.355 Sum_probs=198.6
Q ss_pred HhhHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCCe---eeEEceeEEEEC
Q 008771 46 TCQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV---TVLKDVTWEVKK 122 (554)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~~---~~l~~isl~i~~ 122 (554)
...+.....-+..+.++.++.+|+|+..+.++..... .. ..+....+.|+++||+|+|+.+ ++|+|+||+|++
T Consensus 418 g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~-G~---~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~p 493 (716)
T KOG0058|consen 418 GSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT-GT---LAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRP 493 (716)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC-Cc---cccccccceEEEEEeeeecCCCCCchhhcCceeeeCC
Confidence 3466667777788999999999999998776543221 00 0111356779999999999765 599999999999
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHH----
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKE---- 188 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~---- 188 (554)
||++|||||||+||||+..+|..+|.|++|+|.+||.++ +||+|.|+|.+ |+.||.|||..+..+
T Consensus 494 Ge~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvL-Fs~sI~eNI~YG~~~~t~e 572 (716)
T KOG0058|consen 494 GEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVL-FSGSIRENIAYGLDNATDE 572 (716)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeecccee-ecccHHHHHhcCCCCCCHH
Confidence 999999999999999999999999999999999999764 59999999988 678999999865431
Q ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHH
Q 008771 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268 (554)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv 268 (554)
++...++.... ...+.++-+ |.+..- ..+-.+||||||||+
T Consensus 573 ~i~~AAk~ANa------------------------------------h~FI~~~p~--gY~T~V-GEkG~qLSGGQKQRI 613 (716)
T KOG0058|consen 573 EIEAAAKMANA------------------------------------HEFITNFPD--GYNTVV-GEKGSQLSGGQKQRI 613 (716)
T ss_pred HHHHHHHHhCh------------------------------------HHHHHhCcc--cccccc-CCccccccchHHHHH
Confidence 11111111111 111111111 222211 223358999999999
Q ss_pred HHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 269 ~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||||||+.||.||||||.||+||.++...+.+.|.+ .+.|||+|.|+++.+.+ ||+|+++++|++. -.|++++.+.
T Consensus 614 AIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~-E~G~h~eLl~ 691 (716)
T KOG0058|consen 614 AIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVV-EMGTHDELLS 691 (716)
T ss_pred HHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEE-ecccHHHHhh
Confidence 999999999999999999999999999999888853 57999999999999975 9999999999984 5678877665
Q ss_pred HH
Q 008771 347 EK 348 (554)
Q Consensus 347 ~~ 348 (554)
..
T Consensus 692 ~~ 693 (716)
T KOG0058|consen 692 KP 693 (716)
T ss_pred Cc
Confidence 43
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=352.54 Aligned_cols=209 Identities=21% Similarity=0.281 Sum_probs=171.8
Q ss_pred ccEEEEeEEEEeCCe-----eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------
Q 008771 96 SGVKLENISKSYKGV-----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~-----~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------- 160 (554)
..|+++|++++|+++ ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 458999999999764 49999999999999999999999999999999999999999999988732
Q ss_pred -----ceEEEEeccccc-ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCccc
Q 008771 161 -----MKIAFLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (554)
Q Consensus 161 -----~~i~~v~Q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (554)
..|+|++|++.. .+..|+.+|+...... . ......
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~---------------~------------------------~~~~~~ 125 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVN---------------L------------------------GENKQE 125 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHH---------------c------------------------CCCHHH
Confidence 148999999742 2346899887532100 0 001112
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEE
Q 008771 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (554)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvI 310 (554)
...++.++++.++++....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .++|||
T Consensus 126 ~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 205 (289)
T PRK13645 126 AYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRII 205 (289)
T ss_pred HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 2345667888889864567889999999999999999999999999999999999999999999887643 488999
Q ss_pred EEecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+||||++++.++||+|++|++|++. +.|+..++
T Consensus 206 iisH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 238 (289)
T PRK13645 206 MVTHNMDQVLRIADEVIVMHEGKVI-SIGSPFEI 238 (289)
T ss_pred EEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999999974 45665554
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=331.22 Aligned_cols=206 Identities=24% Similarity=0.464 Sum_probs=183.6
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc------eEEEEeccc
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------KIAFLSQEF 170 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------~i~~v~Q~~ 170 (554)
++++++|+++|+++.+++|+||++++|++.|++|+|||||||.+|+|.|+++|++|+|.|+|... +|||+|.+-
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEER 81 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEER 81 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhh
Confidence 48999999999999999999999999999999999999999999999999999999999998653 699999999
Q ss_pred ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc
Q 008771 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (554)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (554)
.+++.+||.|.+.... ....++..++..++..+|+.+++.
T Consensus 82 GLy~k~tv~dql~yla---------------------------------------~LkGm~~~e~~~~~~~wLer~~i~- 121 (300)
T COG4152 82 GLYPKMTVEDQLKYLA---------------------------------------ELKGMPKAEIQKKLQAWLERLEIV- 121 (300)
T ss_pred ccCccCcHHHHHHHHH---------------------------------------HhcCCcHHHHHHHHHHHHHhcccc-
Confidence 9999999998764210 112455667788899999999996
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHHhhcceEE
Q 008771 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLCTKIV 327 (554)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd~~~l~~~~d~i~ 327 (554)
....+++.+||-|++|++.+..+++++|+++|||||+|||||.+.+.|.+.+ ++.|.|||++||.|+-++++||+++
T Consensus 122 ~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~ll 201 (300)
T COG4152 122 GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLL 201 (300)
T ss_pred ccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhh
Confidence 4567889999999999999999999999999999999999999999998875 5689999999999999999999999
Q ss_pred EeeCCeeeeccCChhH
Q 008771 328 ETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 328 ~l~~g~~~~~~G~~~~ 343 (554)
.|+.|..+ ..|+..+
T Consensus 202 mL~kG~~V-~~G~v~~ 216 (300)
T COG4152 202 MLKKGQTV-LYGTVED 216 (300)
T ss_pred eecCCceE-EeccHHH
Confidence 99999874 4566543
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=340.64 Aligned_cols=193 Identities=22% Similarity=0.336 Sum_probs=164.4
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEE
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~ 164 (554)
+++|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 346999999999998899999999999999999999999999999999999999999999998743 2589
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|++|++.+++ .|+.+|+..... + ......+.++.++++
T Consensus 85 ~~~q~~~l~~-~tv~enl~~~~~---------------~--------------------------~~~~~~~~~~~~~l~ 122 (225)
T PRK10247 85 YCAQTPTLFG-DTVYDNLIFPWQ---------------I--------------------------RNQQPDPAIFLDDLE 122 (225)
T ss_pred EEeccccccc-ccHHHHHHhHHh---------------h--------------------------cCCChHHHHHHHHHH
Confidence 9999988765 599998753100 0 000011245667888
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHH
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~ 320 (554)
.+|+.....++++.+|||||+|||+|||||+.+|++|||||||++||+.+++.+.++|++ .|.|||+||||++++.
T Consensus 123 ~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~ 202 (225)
T PRK10247 123 RFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN 202 (225)
T ss_pred HcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH
Confidence 999864456889999999999999999999999999999999999999999999887653 4889999999999996
Q ss_pred hhcceEEEee
Q 008771 321 QLCTKIVETE 330 (554)
Q Consensus 321 ~~~d~i~~l~ 330 (554)
.||+|++|+
T Consensus 203 -~~d~i~~l~ 211 (225)
T PRK10247 203 -HADKVITLQ 211 (225)
T ss_pred -hCCEEEEEe
Confidence 699999996
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=345.32 Aligned_cols=211 Identities=21% Similarity=0.289 Sum_probs=173.2
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~--------- 160 (554)
...|+++|++++|++.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 11 ~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~ 90 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIA 90 (260)
T ss_pred CceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchH
Confidence 355999999999998889999999999999999999999999999999999986 589999998733
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|++|++.+++ .|+.+|+...... . .........+
T Consensus 91 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~---------------~-----------------------~~~~~~~~~~ 131 (260)
T PRK10744 91 LLRAKVGMVFQKPTPFP-MSIYDNIAFGVRL---------------F-----------------------EKLSRAEMDE 131 (260)
T ss_pred HHhcceEEEecCCccCc-CcHHHHHhhhHhh---------------c-----------------------CCCCHHHHHH
Confidence 24999999987765 7999987532100 0 0001112234
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
++.++++.+|+.. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||+|
T Consensus 132 ~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~ 211 (260)
T PRK10744 132 RVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIV 211 (260)
T ss_pred HHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 5677788888742 345788899999999999999999999999999999999999999999888754 36899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|||++++..+||+|++|++|++. ..|+.+++.
T Consensus 212 sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 243 (260)
T PRK10744 212 THNMQQAARCSDYTAFMYLGELI-EFGNTDTIF 243 (260)
T ss_pred eCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 99999999999999999999974 456655543
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=380.25 Aligned_cols=213 Identities=35% Similarity=0.550 Sum_probs=182.8
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccc-cc
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE-VS 173 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~-~~ 173 (554)
.++|+++|++++|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++ ....|||++|++. ++
T Consensus 320 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~-~~~~i~~v~q~~~~~~ 398 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIG-ETVKLAYVDQSRDALD 398 (552)
T ss_pred CeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEEC-CceEEEEEeCCccccC
Confidence 457999999999998899999999999999999999999999999999999999999999984 4567999999974 66
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcccc
Q 008771 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (554)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (554)
+..||.+++...... ......+..+..+++.+|+.....
T Consensus 399 ~~~tv~e~l~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~~l~~~~~ 437 (552)
T TIGR03719 399 PNKTVWEEISGGLDI-----------------------------------------IQLGKREVPSRAYVGRFNFKGSDQ 437 (552)
T ss_pred CCCcHHHHHHhhccc-----------------------------------------cccCcchHHHHHHHHhCCCChhHh
Confidence 778999998542100 000001123456788899865456
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeC-C
Q 008771 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM-G 332 (554)
Q Consensus 254 ~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~-g 332 (554)
++++.+|||||||||+||+||+.+|++|||||||++||+.++++|.++|++.+.|||+||||++++..+||+|++|++ |
T Consensus 438 ~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~ 517 (552)
T TIGR03719 438 QKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDS 517 (552)
T ss_pred cCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCC
Confidence 889999999999999999999999999999999999999999999999988777999999999999999999999986 5
Q ss_pred eeeeccCChhHHHHHHH
Q 008771 333 VSRTYEGNYSQYVLEKA 349 (554)
Q Consensus 333 ~~~~~~G~~~~~~~~~~ 349 (554)
++..|.|+|++|...+.
T Consensus 518 ~~~~~~g~~~~~~~~~~ 534 (552)
T TIGR03719 518 HVEWFEGNYSEYEEDKK 534 (552)
T ss_pred eEEEeCCCHHHHHHHHH
Confidence 88789999988866543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=345.65 Aligned_cols=210 Identities=29% Similarity=0.399 Sum_probs=175.9
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEe
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLS 167 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~ 167 (554)
|+++|+++.|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE 81 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEec
Confidence 6899999999988999999999999999999999999999999999999999999999987431 489999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
|++.+++..||.+|+......... . ..........++.++++.+|
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~~~-----------~------------------------~~~~~~~~~~~~~~~l~~~~ 126 (256)
T TIGR03873 82 QDSDTAVPLTVRDVVALGRIPHRS-----------L------------------------WAGDSPHDAAVVDRALARTE 126 (256)
T ss_pred ccCccCCCCCHHHHHHhcchhhhh-----------h------------------------ccCCCHHHHHHHHHHHHHcC
Confidence 998777788999998542100000 0 00001122346778888899
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcc
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d 324 (554)
+. +..++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|++ .+.|||++|||++++..+||
T Consensus 127 l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d 205 (256)
T TIGR03873 127 LS-HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCD 205 (256)
T ss_pred cH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 85 567889999999999999999999999999999999999999999999888753 47899999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHH
Q 008771 325 KIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~ 344 (554)
+|++|++|++. ..|..+++
T Consensus 206 ~i~~l~~G~i~-~~g~~~~~ 224 (256)
T TIGR03873 206 HVVVLDGGRVV-AAGPPREV 224 (256)
T ss_pred EEEEEeCCCEE-EecCHHHh
Confidence 99999999874 55665544
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=343.18 Aligned_cols=210 Identities=20% Similarity=0.322 Sum_probs=172.9
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC--C---CceeEEEcCCC----------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSN---------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--p---~~G~I~~~~~~---------- 160 (554)
..|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.+
T Consensus 3 ~~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 82 (252)
T PRK14256 3 NKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82 (252)
T ss_pred cEEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHH
Confidence 45899999999998889999999999999999999999999999999999986 4 69999998743
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..|+|+||++.+++..|+.+|+...+... ........+.+
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--------------------------------------~~~~~~~~~~~ 124 (252)
T PRK14256 83 IRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--------------------------------------GRVNRSEADEI 124 (252)
T ss_pred hhccEEEEecCCCCCCcCcHHHHHHhHHHhc--------------------------------------CCCCHHHHHHH
Confidence 14999999998888889999985321100 00001122345
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+.++++.+|+.. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivs 204 (252)
T PRK14256 125 VESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVT 204 (252)
T ss_pred HHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 667777788743 245678899999999999999999999999999999999999999999888753 368999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||++++.++||+|++|++|++. ..|..+++
T Consensus 205 H~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 234 (252)
T PRK14256 205 HNMQQAARVSDYTAFFYMGDLV-ECGETKKI 234 (252)
T ss_pred CCHHHHHhhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999874 44655544
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=339.94 Aligned_cols=207 Identities=23% Similarity=0.355 Sum_probs=174.6
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (554)
+|+++||+++|++.. .|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 378999999998644 39999999999999999999999999999999999999999998853 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++..|+.+|+...+... . ......+.++.++++.+|+
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~-----------------~----------------------~~~~~~~~~~~~~l~~~~l 119 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPG-----------------L----------------------KLNAAQREKLHAIARQMGI 119 (232)
T ss_pred ccccccCCcHHHHHhcccccc-----------------c----------------------CCCHHHHHHHHHHHHHcCc
Confidence 998888889999985321000 0 0001124457788899999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d 324 (554)
. ...++++.+|||||+||++|||||+.+|++|||||||++||+.+++.+.++|++ .|.|+|+||||++++.++||
T Consensus 120 ~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 198 (232)
T PRK10771 120 E-DLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAP 198 (232)
T ss_pred H-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 6 467899999999999999999999999999999999999999999888887643 48899999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHHHH
Q 008771 325 KIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+|++|++|++. +.|+++++..
T Consensus 199 ~i~~l~~g~i~-~~g~~~~~~~ 219 (232)
T PRK10771 199 RSLVVADGRIA-WDGPTDELLS 219 (232)
T ss_pred EEEEEECCEEE-EeCCHHHHHh
Confidence 99999999874 6787776653
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=345.67 Aligned_cols=210 Identities=20% Similarity=0.281 Sum_probs=170.3
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~--------- 160 (554)
.++|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 19 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 19 EHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred CceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 457999999999998889999999999999999999999999999999999864 799999998632
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|++|++.+++ .|+.+|+...+... . .......+.
T Consensus 99 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---------------~-----------------------~~~~~~~~~ 139 (268)
T PRK14248 99 NLRREIGMVFQKPNPFP-KSIYNNITHALKYA---------------G-----------------------ERRKSVLDE 139 (268)
T ss_pred HHhccEEEEecCCccCc-ccHHHHHHHHHHhc---------------C-----------------------CCcHHHHHH
Confidence 25999999988766 49999985321100 0 000001123
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
.+.+++..+++.. ...++++.+|||||+||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||++
T Consensus 140 ~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~ 219 (268)
T PRK14248 140 IVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIV 219 (268)
T ss_pred HHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 3455566666631 345788999999999999999999999999999999999999999999888754 36899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|||++++..+||+|++|++|++. +.|+.+++
T Consensus 220 tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 250 (268)
T PRK14248 220 THNMQQALRVSDRTAFFLNGDLV-EYDQTEQI 250 (268)
T ss_pred EeCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999874 55665544
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=317.93 Aligned_cols=210 Identities=25% Similarity=0.430 Sum_probs=181.7
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------- 160 (554)
+.|+++|+.++||...+|++|||+-++|+++.|||.+||||||+||||+=+..|+.|.|.++|..
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 35899999999999999999999999999999999999999999999999999999999988742
Q ss_pred --------ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCc
Q 008771 161 --------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (554)
Q Consensus 161 --------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (554)
.+.|+|||+++++..+||.||+..+...- + ....
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV-----------------------L---------------g~~k 126 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV-----------------------L---------------GVSK 126 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHh-----------------------h---------------cCCH
Confidence 14899999999999999999987542110 0 1234
Q ss_pred ccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHH---HccCCCeE
Q 008771 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPM 309 (554)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~---l~~~g~tv 309 (554)
.+..+++..+|.++|+. +..+.+|..|||||+||++|||||+.+|+++|+|||||+|||+-.-.+... |.+.|.|+
T Consensus 127 ~ea~e~Ae~~L~kVGi~-ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTM 205 (256)
T COG4598 127 AEAIERAEKYLAKVGIA-EKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTM 205 (256)
T ss_pred HHHHHHHHHHHHHhCch-hhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeE
Confidence 45667888999999996 456789999999999999999999999999999999999999987766655 45679999
Q ss_pred EEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 310 IiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
++|||.+.|+.+++++|+++++|.+ .-.|+..+..
T Consensus 206 v~VTHEM~FAR~Vss~v~fLh~G~i-EE~G~P~qvf 240 (256)
T COG4598 206 VVVTHEMGFARDVSSHVIFLHQGKI-EEEGPPEQVF 240 (256)
T ss_pred EEEeeehhHHHhhhhheEEeeccee-cccCChHHHh
Confidence 9999999999999999999999986 5567665544
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=347.16 Aligned_cols=208 Identities=26% Similarity=0.387 Sum_probs=173.6
Q ss_pred cEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEE
Q 008771 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 97 ~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~ 164 (554)
+|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.. ..|+
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 478999999995 5679999999999999999999999999999999999999999999998743 2499
Q ss_pred EEeccccc-ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 165 FLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 165 ~v~Q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
|++|++.. ++..|+.+|+...... .........+++.+++
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~~~~l 121 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPEN---------------------------------------LCLPPIEIRKRVDRAL 121 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHH---------------------------------------cCCCHHHHHHHHHHHH
Confidence 99999863 5667999987532100 0011223345677888
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~ 320 (554)
+.+|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++..+.+.|+ +.|.|||++|||++++.
T Consensus 122 ~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~ 200 (274)
T PRK13644 122 AEIGLE-KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH 200 (274)
T ss_pred HHCCCH-HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh
Confidence 899986 45688999999999999999999999999999999999999999999888774 35899999999999995
Q ss_pred hhcceEEEeeCCeeeeccCChhHHHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
.||+|++|++|++ .+.|+..++..
T Consensus 201 -~~d~v~~l~~G~i-~~~g~~~~~~~ 224 (274)
T PRK13644 201 -DADRIIVMDRGKI-VLEGEPENVLS 224 (274)
T ss_pred -hCCEEEEEECCEE-EEECCHHHHhc
Confidence 6999999999997 46677665543
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=335.48 Aligned_cols=194 Identities=23% Similarity=0.312 Sum_probs=167.4
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-------eEEEEe
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------KIAFLS 167 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-------~i~~v~ 167 (554)
+++|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++
T Consensus 9 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~ 88 (214)
T PRK13543 9 PPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLG 88 (214)
T ss_pred cceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEee
Confidence 3569999999999888899999999999999999999999999999999999999999999987532 499999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
|++.+++..|+.+|+..... . .....++.+.+++..+|
T Consensus 89 q~~~~~~~~t~~e~l~~~~~---------------~---------------------------~~~~~~~~~~~~l~~~~ 126 (214)
T PRK13543 89 HLPGLKADLSTLENLHFLCG---------------L---------------------------HGRRAKQMPGSALAIVG 126 (214)
T ss_pred cCcccccCCcHHHHHHHHHH---------------h---------------------------cCCcHHHHHHHHHHHcC
Confidence 99888777899998743110 0 00112344567788889
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcc
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d 324 (554)
+. ...++++.+|||||||||+|||+|+.+|++|||||||++||+.+++++.++|++ .+.|+|++|||++++.++||
T Consensus 127 l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~ 205 (214)
T PRK13543 127 LA-GYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRT 205 (214)
T ss_pred Ch-hhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcc
Confidence 86 456888999999999999999999999999999999999999999999888753 48999999999999999999
Q ss_pred eEEEeeC
Q 008771 325 KIVETEM 331 (554)
Q Consensus 325 ~i~~l~~ 331 (554)
++++++.
T Consensus 206 ~i~~l~~ 212 (214)
T PRK13543 206 RMLTLEA 212 (214)
T ss_pred eEEEEee
Confidence 9999864
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=341.31 Aligned_cols=210 Identities=18% Similarity=0.275 Sum_probs=172.9
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCC---CCC--CceeEEEcCCCc---------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ---EEP--DSGNVIKAKSNM--------- 161 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~---~~p--~~G~I~~~~~~~--------- 161 (554)
++|+++|+++.|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+ ++| ++|+|.++|.+.
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 468999999999988899999999999999999999999999999999997 455 589999987431
Q ss_pred ---eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 162 ---~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
.|+|+||++.+++ .|+.+|+...+.. .. .......+..
T Consensus 82 ~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~---------------~~-----------------------~~~~~~~~~~ 122 (250)
T PRK14245 82 LRKNVGMVFQRPNPFP-KSIFENVAYGLRV---------------NG-----------------------VKDNAFIRQR 122 (250)
T ss_pred HhhheEEEecCCccCc-ccHHHHHHHHHHH---------------cC-----------------------CCcHHHHHHH
Confidence 4999999988765 5999988532110 00 0000112345
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+.++++.+|+.. ...++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||
T Consensus 123 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivt 202 (250)
T PRK14245 123 VEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVT 202 (250)
T ss_pred HHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 677788888753 245788999999999999999999999999999999999999999999988754 368999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
||++++.++||+|++|++|++ .+.|+..++.
T Consensus 203 H~~~~~~~~~d~v~~l~~G~~-~~~~~~~~~~ 233 (250)
T PRK14245 203 HNMQQAARVSDKTAFFYMGEM-VEYDDTKKIF 233 (250)
T ss_pred CCHHHHHhhCCEEEEEECCEE-EEECCHHHHh
Confidence 999999999999999999987 4667766554
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=346.62 Aligned_cols=208 Identities=24% Similarity=0.371 Sum_probs=174.1
Q ss_pred cEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc------------eE
Q 008771 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------KI 163 (554)
Q Consensus 97 ~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------------~i 163 (554)
+|+++||+++|+ +.++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 478999999996 46799999999999999999999999999999999999999999999987432 48
Q ss_pred EEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 164 ~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
+|++|++. .++..||.+|+...... . .........++.++
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~----------------~-----------------------~~~~~~~~~~~~~~ 121 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLN----------------L-----------------------GLSKEEVEKRVKEA 121 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHH----------------c-----------------------CCCHHHHHHHHHHH
Confidence 99999974 33557999987532100 0 00111233457788
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l 319 (554)
++.+|+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+||||++++
T Consensus 122 l~~~~L~-~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~ 200 (275)
T PRK13639 122 LKAVGME-GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLV 200 (275)
T ss_pred HHHCCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 8999996 467899999999999999999999999999999999999999999999888753 489999999999999
Q ss_pred HhhcceEEEeeCCeeeeccCChhHHH
Q 008771 320 DQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
..+||+|++|++|++. ..|+.+++.
T Consensus 201 ~~~~d~i~~l~~G~i~-~~g~~~~~~ 225 (275)
T PRK13639 201 PVYADKVYVMSDGKII-KEGTPKEVF 225 (275)
T ss_pred HHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999874 457766654
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=336.97 Aligned_cols=199 Identities=31% Similarity=0.458 Sum_probs=171.3
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------ceEEEEecccc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------MKIAFLSQEFE 171 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------~~i~~v~Q~~~ 171 (554)
|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+||++.
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~ 80 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPP 80 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCC
Confidence 478999999998899999999999999999999999999999999999999999999998753 26899999998
Q ss_pred cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcc
Q 008771 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (554)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (554)
+++..|+.+|+..... . .. ..+.++.++++.+|+. .
T Consensus 81 ~~~~~t~~~~~~~~~~---------------~--------------------------~~--~~~~~~~~~l~~~~l~-~ 116 (223)
T TIGR03740 81 LYENLTARENLKVHTT---------------L--------------------------LG--LPDSRIDEVLNIVDLT-N 116 (223)
T ss_pred ccccCCHHHHHHHHHH---------------H--------------------------cC--CCHHHHHHHHHHcCCc-H
Confidence 8888899998743210 0 00 0123567788889986 4
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceEEE
Q 008771 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVE 328 (554)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i~~ 328 (554)
..++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.++|++ .|.|||++|||++++.++||+|++
T Consensus 117 ~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 196 (223)
T TIGR03740 117 TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGI 196 (223)
T ss_pred HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEE
Confidence 56888999999999999999999999999999999999999999999888753 478999999999999999999999
Q ss_pred eeCCeeeeccCCh
Q 008771 329 TEMGVSRTYEGNY 341 (554)
Q Consensus 329 l~~g~~~~~~G~~ 341 (554)
|++|++. +.|+.
T Consensus 197 l~~g~i~-~~~~~ 208 (223)
T TIGR03740 197 ISEGVLG-YQGKI 208 (223)
T ss_pred EeCCEEE-EecCh
Confidence 9999874 44543
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=339.68 Aligned_cols=211 Identities=24% Similarity=0.374 Sum_probs=181.4
Q ss_pred ccEEEEeEEEEeCCe------------------------eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCc
Q 008771 96 SGVKLENISKSYKGV------------------------TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~------------------------~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~ 151 (554)
..|+++|+++-||.+ .-++|+||+|++||+..|.|-||||||||+|+|+++++|++
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 348889999888641 25799999999999999999999999999999999999999
Q ss_pred eeEEEcCCCc--------------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHH
Q 008771 152 GNVIKAKSNM--------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217 (554)
Q Consensus 152 G~I~~~~~~~--------------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (554)
|+|.++|.++ ++++|||.+.++|..||.+|...++.
T Consensus 83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe------------------------------ 132 (386)
T COG4175 83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE------------------------------ 132 (386)
T ss_pred ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee------------------------------
Confidence 9999998653 69999999999999999999865431
Q ss_pred HHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHH
Q 008771 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW 297 (554)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~ 297 (554)
...++..+.++++.++|+.+||. .+.+++|++|||||||||.|||||+.+|+|||+|||+|+|||--+..
T Consensus 133 ---------v~Gv~~~er~~~a~~~l~~VgL~-~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~ 202 (386)
T COG4175 133 ---------VQGVPKAEREERALEALELVGLE-GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTE 202 (386)
T ss_pred ---------ecCCCHHHHHHHHHHHHHHcCch-hhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHH
Confidence 01334556678899999999996 67899999999999999999999999999999999999999976655
Q ss_pred HHH----HHccCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 298 LEG----YLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 298 l~~----~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
+.+ +.++.++||||||||++++.++.|||.+|++|++ +..|...+.+..
T Consensus 203 mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~i-vQ~Gtp~eIl~~ 255 (386)
T COG4175 203 MQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEI-VQVGTPEEILLN 255 (386)
T ss_pred HHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeE-EEeCCHHHHHcC
Confidence 544 4456799999999999999999999999999997 456766665554
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=344.03 Aligned_cols=211 Identities=18% Similarity=0.286 Sum_probs=173.5
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~--------- 160 (554)
.+.|+++||+++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 17 ~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~ 96 (267)
T PRK14235 17 EIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV 96 (267)
T ss_pred CceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchH
Confidence 3469999999999988899999999999999999999999999999999999974 89999998732
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|++|++.+++ .||.+|+...... .. . .........
T Consensus 97 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~-~---------------------~~~~~~~~~ 138 (267)
T PRK14235 97 ELRARVGMVFQKPNPFP-KSIYENVAYGPRI---------------HG-L---------------------ARSKAELDE 138 (267)
T ss_pred HHhhceEEEecCCCCCC-CcHHHHHHHHHHh---------------cc-c---------------------ccchHHHHH
Confidence 24899999988766 4999998532100 00 0 000112344
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
++.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|
T Consensus 139 ~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiiv 218 (267)
T PRK14235 139 IVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIV 218 (267)
T ss_pred HHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 5677888888853 245778899999999999999999999999999999999999999999988753 36899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|||++++..+||+|++|++|++. ..|+.+++
T Consensus 219 tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 249 (267)
T PRK14235 219 THSMQQAARVSQRTAFFHLGNLV-EVGDTEKM 249 (267)
T ss_pred EcCHHHHHhhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999874 45665544
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=337.62 Aligned_cols=206 Identities=27% Similarity=0.429 Sum_probs=175.1
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEecc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (554)
|.++|++++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecc
Confidence 478999999998899999999999999999999999999999999999999999999998743 359999999
Q ss_pred cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
+.+++..|+.+|+...+.. ........++++..+++.+|+.
T Consensus 81 ~~~~~~~t~~~nl~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~~l~ 121 (232)
T cd03300 81 YALFPHLTVFENIAFGLRL---------------------------------------KKLPKAEIKERVAEALDLVQLE 121 (232)
T ss_pred cccCCCCcHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcCCc
Confidence 9887788999987532110 0001112344667788889996
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcce
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~ 325 (554)
...++.+.+|||||+||++|||||+.+|++|||||||++||+.++.++.+.+++ .|.|||++|||++++.++||+
T Consensus 122 -~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~ 200 (232)
T cd03300 122 -GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDR 200 (232)
T ss_pred -hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCE
Confidence 567888999999999999999999999999999999999999999999888753 389999999999999999999
Q ss_pred EEEeeCCeeeeccCChhHH
Q 008771 326 IVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 326 i~~l~~g~~~~~~G~~~~~ 344 (554)
|++|++|++. +.|+..++
T Consensus 201 i~~l~~G~~~-~~~~~~~~ 218 (232)
T cd03300 201 IAVMNKGKIQ-QIGTPEEI 218 (232)
T ss_pred EEEEECCEEE-ecCCHHHH
Confidence 9999999985 44555443
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=347.71 Aligned_cols=209 Identities=23% Similarity=0.366 Sum_probs=175.9
Q ss_pred ccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eE
Q 008771 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (554)
Q Consensus 96 ~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i 163 (554)
++|+++||++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 46999999999974 5699999999999999999999999999999999999999999999988532 59
Q ss_pred EEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 164 ~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
+|++|++. +++..||.+|+...... ..........++.++
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~~~~ 124 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLEN---------------------------------------IGVPREEMVERVDQA 124 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhh---------------------------------------CCCCHHHHHHHHHHH
Confidence 99999984 56678999998532100 000112234567888
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~ 318 (554)
++.+||. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||+++
T Consensus 125 l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~ 203 (279)
T PRK13635 125 LRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE 203 (279)
T ss_pred HHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 9999996 567889999999999999999999999999999999999999999999888753 38999999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+. .||+|++|++|++ .+.|+..++..
T Consensus 204 ~~-~~d~i~~l~~G~i-~~~g~~~~~~~ 229 (279)
T PRK13635 204 AA-QADRVIVMNKGEI-LEEGTPEEIFK 229 (279)
T ss_pred HH-cCCEEEEEECCEE-EEECCHHHHhc
Confidence 97 5999999999987 46677665543
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=338.95 Aligned_cols=209 Identities=23% Similarity=0.331 Sum_probs=172.8
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC---CCceeEEEcCCCc----------eE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE---PDSGNVIKAKSNM----------KI 163 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~---p~~G~I~~~~~~~----------~i 163 (554)
+|+++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+. .|
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 4799999999998889999999999999999999999999999999999974 7999999987532 49
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+|+||++.+++ .|+.+|+..... ..... ........++.+++
T Consensus 82 ~~~~q~~~l~~-~tv~eni~~~~~---------------~~~~~----------------------~~~~~~~~~~~~~l 123 (246)
T PRK14269 82 GMVFQQPNVFV-KSIYENISYAPK---------------LHGMI----------------------KNKDEEEALVVDCL 123 (246)
T ss_pred EEEecCCcccc-ccHHHHhhhHHh---------------hcCcc----------------------cChHHHHHHHHHHH
Confidence 99999998765 699999753210 00000 00112334567788
Q ss_pred hhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHH
Q 008771 244 PELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAF 318 (554)
Q Consensus 244 ~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~ 318 (554)
+.+|+.. ...++.+.+|||||+|||+|||||+.+|++|||||||++||+.++.++.+.|++ .+.|+|+||||+++
T Consensus 124 ~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~ 203 (246)
T PRK14269 124 QKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQ 203 (246)
T ss_pred HHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 8888852 345778899999999999999999999999999999999999999999888754 48899999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhHH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+..+||+|++|++|++. ..|...++
T Consensus 204 ~~~~~d~i~~l~~G~i~-~~g~~~~~ 228 (246)
T PRK14269 204 GKRVADYTAFFHLGELI-EFGESKEF 228 (246)
T ss_pred HHhhCcEEEEEECCEEE-EECCHHHH
Confidence 99999999999999985 45655544
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=356.99 Aligned_cols=198 Identities=26% Similarity=0.411 Sum_probs=170.1
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------ce
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MK 162 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~~ 162 (554)
+|++ ||+++|+++.+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 1 ~l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 1 MLEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred CeEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 3778 99999987643 8999999999999999999999999999999999999999987732 25
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
|+|++|++.+++.+||.+|+..... .....++.++
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~---------------------------------------------~~~~~~~~~~ 112 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMA---------------------------------------------KSMVAQFDKI 112 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhh---------------------------------------------hhhHHHHHHH
Confidence 9999999999889999999853210 0112356778
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~ 318 (554)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|+|+||||+++
T Consensus 113 l~~~gl~-~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~ 191 (352)
T PRK11144 113 VALLGIE-PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDE 191 (352)
T ss_pred HHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Confidence 8889996 467899999999999999999999999999999999999999999988887753 48899999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhHH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+..+||+|++|++|++. ..|+..++
T Consensus 192 ~~~~~d~i~~l~~G~i~-~~g~~~~i 216 (352)
T PRK11144 192 ILRLADRVVVLEQGKVK-AFGPLEEV 216 (352)
T ss_pred HHHhCCEEEEEeCCEEE-EecCHHHH
Confidence 99999999999999974 44655544
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=340.45 Aligned_cols=209 Identities=20% Similarity=0.296 Sum_probs=170.6
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCC----------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN---------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~---------- 160 (554)
.+|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 35899999999998899999999999999999999999999999999999997 489999998743
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..|+|++|++.++. .||.+|+...... .. ....+..+.+
T Consensus 83 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~---------------~~-----------------------~~~~~~~~~~ 123 (251)
T PRK14251 83 LRKEVGMVFQQPTPFP-FSVYDNVAYGLKI---------------AG-----------------------VKDKELIDQR 123 (251)
T ss_pred hhccEEEEecCCccCC-CcHHHHHHHHHHH---------------cC-----------------------CCCHHHHHHH
Confidence 24999999987764 7999998532110 00 0000112334
Q ss_pred HHHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+.++++.+|+. ....++.+.+|||||+||++|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||+||
T Consensus 124 ~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiis 203 (251)
T PRK14251 124 VEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVT 203 (251)
T ss_pred HHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 56667777773 1345778899999999999999999999999999999999999999999888764 368999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||++++.++||+|++|++|++.. .|..+++
T Consensus 204 H~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 233 (251)
T PRK14251 204 HNLQQAGRISDQTAFLMNGDLIE-AGPTEEM 233 (251)
T ss_pred CCHHHHHhhcCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999854 4555443
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-42 Score=375.69 Aligned_cols=209 Identities=31% Similarity=0.530 Sum_probs=182.7
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccc--c
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE--V 172 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~--~ 172 (554)
..+|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..|||++|++. +
T Consensus 317 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-~~i~~~~q~~~~~~ 395 (530)
T PRK15064 317 RNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-ANIGYYAQDHAYDF 395 (530)
T ss_pred CceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-eEEEEEcccccccC
Confidence 35799999999999888999999999999999999999999999999999999999999999864 57999999974 3
Q ss_pred ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccc
Q 008771 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (554)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 252 (554)
+...|+.+++.... .....+.++.++|+.+|+....
T Consensus 396 ~~~~t~~~~~~~~~--------------------------------------------~~~~~~~~~~~~l~~~~l~~~~ 431 (530)
T PRK15064 396 ENDLTLFDWMSQWR--------------------------------------------QEGDDEQAVRGTLGRLLFSQDD 431 (530)
T ss_pred CCCCcHHHHHHHhc--------------------------------------------cCCccHHHHHHHHHHcCCChhH
Confidence 44679988763100 0001234567788999986456
Q ss_pred cCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCC
Q 008771 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332 (554)
Q Consensus 253 ~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g 332 (554)
.++++.+|||||||||+||+||+.+|++|||||||++||+.+++++.+.|++.+.|||+||||++++..+||+|++|++|
T Consensus 432 ~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g 511 (530)
T PRK15064 432 IKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPD 511 (530)
T ss_pred hcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 78999999999999999999999999999999999999999999999999888889999999999999999999999999
Q ss_pred eeeeccCChhHHHHHH
Q 008771 333 VSRTYEGNYSQYVLEK 348 (554)
Q Consensus 333 ~~~~~~G~~~~~~~~~ 348 (554)
++..+.|++.++...+
T Consensus 512 ~i~~~~g~~~~~~~~~ 527 (530)
T PRK15064 512 GVVDFSGTYEEYLRSQ 527 (530)
T ss_pred eEEEcCCCHHHHHHHh
Confidence 9877899998876543
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=340.39 Aligned_cols=199 Identities=27% Similarity=0.380 Sum_probs=166.8
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccC
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~ 175 (554)
++|+++||++.|+++++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..|+|++|++.+++.
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~-~~i~~v~q~~~~~~~ 81 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK-LRIGYVPQKLYLDTT 81 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc-cCEEEeccccccccc
Confidence 4699999999999888999999999999999999999999999999999999999999999863 469999999876554
Q ss_pred --ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcccc
Q 008771 176 --RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (554)
Q Consensus 176 --~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (554)
.|+.+++... ....+.++.++++.+|+. +..
T Consensus 82 l~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~l~~~gl~-~~~ 114 (251)
T PRK09544 82 LPLTVNRFLRLR----------------------------------------------PGTKKEDILPALKRVQAG-HLI 114 (251)
T ss_pred cChhHHHHHhcc----------------------------------------------ccccHHHHHHHHHHcCCh-HHH
Confidence 2554443110 000123456678888886 456
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceEEEe
Q 008771 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVET 329 (554)
Q Consensus 254 ~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i~~l 329 (554)
++++.+|||||+|||+||+||+.+|++|||||||++||+.++.++.+.|++ .+.|||+||||++++..+||+|++|
T Consensus 115 ~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l 194 (251)
T PRK09544 115 DAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCL 194 (251)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 788999999999999999999999999999999999999999999888743 3899999999999999999999999
Q ss_pred eCCeeeeccCChhHH
Q 008771 330 EMGVSRTYEGNYSQY 344 (554)
Q Consensus 330 ~~g~~~~~~G~~~~~ 344 (554)
++ ++ ...|+.+++
T Consensus 195 ~~-~i-~~~g~~~~~ 207 (251)
T PRK09544 195 NH-HI-CCSGTPEVV 207 (251)
T ss_pred CC-ce-EeeCCHHHH
Confidence 75 44 466766554
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=322.35 Aligned_cols=211 Identities=26% Similarity=0.415 Sum_probs=172.7
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------eEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-----------~i~ 164 (554)
++++++||+..||...+|++|||++++||+++|+|+||+|||||||+|+|+.+|.+|+|.++|.++ .|+
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 469999999999999999999999999999999999999999999999999999999999998753 599
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
||||.-.+|+.+||.||+..+....... .. .....+.+-+++.
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~------------~~-------------------------~~~~~e~v~~lFP 124 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDK------------EA-------------------------QERDLEEVYELFP 124 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhccccc------------cc-------------------------ccccHHHHHHHCh
Confidence 9999999999999999997542110000 00 0000011111112
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHH
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLD 320 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~ 320 (554)
.+ .+..++...+|||||||.++|||||+.+|++|+|||||.||-|.-.+.+.+.++ +.|.||++|.++..++.
T Consensus 125 ~L---ker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al 201 (237)
T COG0410 125 RL---KERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFAL 201 (237)
T ss_pred hH---HHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHH
Confidence 11 234577789999999999999999999999999999999999999888877654 34779999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
+++||.++|++|++ .+.|+-++....
T Consensus 202 ~iaDr~yvle~Gri-v~~G~~~eL~~~ 227 (237)
T COG0410 202 EIADRGYVLENGRI-VLSGTAAELLAD 227 (237)
T ss_pred HhhCEEEEEeCCEE-EEecCHHHHhcC
Confidence 99999999999997 678877665543
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=333.09 Aligned_cols=192 Identities=30% Similarity=0.452 Sum_probs=164.0
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------ceE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKI 163 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~~i 163 (554)
+.+ ||+|+|+++.+ |+||+|++ |+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 2 ~~~-~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 2 LCV-DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred cee-eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 455 99999998766 99999999 9999999999999999999999999999999998742 159
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+|++|++.+++..|+.+|+...... ......+.++.+++
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~-----------------------------------------~~~~~~~~~~~~~l 116 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKR-----------------------------------------KRNREDRISVDELL 116 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhh-----------------------------------------CCHHHHHHHHHHHH
Confidence 9999999888888999987532100 00011234567788
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFL 319 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l 319 (554)
+.+|+. ...++++.+||||||||++||+||+.+|++|||||||++||+.+++.+.+.+++ .|.|||+||||++++
T Consensus 117 ~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 195 (214)
T cd03297 117 DLLGLD-HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEA 195 (214)
T ss_pred HHcCCH-hHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHH
Confidence 889986 456888999999999999999999999999999999999999999999888753 388999999999999
Q ss_pred HhhcceEEEeeCCeee
Q 008771 320 DQLCTKIVETEMGVSR 335 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~ 335 (554)
..+||+|++|++|++.
T Consensus 196 ~~~~d~i~~l~~G~i~ 211 (214)
T cd03297 196 EYLADRIVVMEDGRLQ 211 (214)
T ss_pred HHhcCEEEEEECCEEE
Confidence 9999999999999874
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=339.48 Aligned_cols=209 Identities=22% Similarity=0.284 Sum_probs=170.6
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCC--CC---CceeEEEcCCC----------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EP---DSGNVIKAKSN---------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p---~~G~I~~~~~~---------- 160 (554)
++|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+. +| ++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 3689999999999888999999999999999999999999999999999985 46 59999998742
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..|+|+||++.+++ .||.+|+...... .. . ........+
T Consensus 84 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~-~----------------------~~~~~~~~~ 124 (252)
T PRK14239 84 LRKEIGMVFQQPNPFP-MSIYENVVYGLRL---------------KG-I----------------------KDKQVLDEA 124 (252)
T ss_pred hhhcEEEEecCCccCc-CcHHHHHHHHHHH---------------cC-C----------------------CcHHHHHHH
Confidence 25999999988765 7999998532100 00 0 000112344
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+..+++.+|+.. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~s 204 (252)
T PRK14239 125 VEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVT 204 (252)
T ss_pred HHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEE
Confidence 566677777632 245788899999999999999999999999999999999999999999988764 368999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||++++..+||+|++|++|++. +.|...+.
T Consensus 205 H~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 234 (252)
T PRK14239 205 RSMQQASRISDRTGFFLDGDLI-EYNDTKQM 234 (252)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999974 55665554
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=339.75 Aligned_cols=210 Identities=19% Similarity=0.254 Sum_probs=172.2
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~--------- 160 (554)
+++|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.+
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 2 KIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred ccEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 4679999999999888899999999999999999999999999999999999875 89999998743
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..++|+||++.+++ .|+.+|+...... .. .........
T Consensus 82 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~---------------~~-----------------------~~~~~~~~~ 122 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFP-MSIYDNVAYGPRI---------------HG-----------------------IKDKKELDK 122 (251)
T ss_pred HHHhheEEEecCCCcCC-CcHHHHHHhHHHh---------------cC-----------------------CCcHHHHHH
Confidence 24999999998766 8999998532100 00 000011233
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
++.++++.+|+.. ...++++.+||||||||++|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||+|
T Consensus 123 ~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiiv 202 (251)
T PRK14270 123 IVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIV 202 (251)
T ss_pred HHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 4566777777642 345788899999999999999999999999999999999999999999888764 26899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|||++++.++||+|++|++|++. ..|+.++.
T Consensus 203 sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 233 (251)
T PRK14270 203 THNMQQASRVSDYTAFFLMGDLI-EFNKTEKI 233 (251)
T ss_pred EcCHHHHHHhcCEEEEEECCeEE-EeCCHHHH
Confidence 99999999999999999999975 44655543
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=341.79 Aligned_cols=211 Identities=18% Similarity=0.279 Sum_probs=173.9
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCCc--------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSNM-------- 161 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~~-------- 161 (554)
..+|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 18 ~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 18 EIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred CeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 356999999999998899999999999999999999999999999999999986 5899999987432
Q ss_pred ----eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 162 ----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 162 ----~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
.|+|+||++.+++ .||.+|+....... . .......+.
T Consensus 98 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~---------------~-----------------------~~~~~~~~~ 138 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFA-KSIYENITFALERA---------------G-----------------------VKDKKVLDE 138 (267)
T ss_pred HHhcceEEEecCCcccc-ccHHHHHHhHHHhc---------------C-----------------------CCCHHHHHH
Confidence 4999999988765 69999985431100 0 000112334
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
++.++++.+++.. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|
T Consensus 139 ~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~ 218 (267)
T PRK14237 139 IVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIV 218 (267)
T ss_pred HHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5666777777742 345788999999999999999999999999999999999999999999887753 36899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|||++++..+||+|++|++|++. ..|+..++.
T Consensus 219 tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 250 (267)
T PRK14237 219 THNMQQAARASDYTAFFYLGDLI-EYDKTRNIF 250 (267)
T ss_pred ecCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999985 556666543
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=340.78 Aligned_cols=211 Identities=20% Similarity=0.276 Sum_probs=172.6
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC--C---CceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--p---~~G~I~~~~~~--------- 160 (554)
+++|+++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.+
T Consensus 10 ~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 10 QEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred CceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 356999999999998889999999999999999999999999999999999987 3 69999998743
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|+||++.+++. |+.+|+...... .. .........
T Consensus 90 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~---------------~~-----------------------~~~~~~~~~ 130 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRI---------------HG-----------------------TKNKKKLQE 130 (259)
T ss_pred HHhhceEEEecCCccccc-CHHHHHHhHHHh---------------cC-----------------------CCCHHHHHH
Confidence 249999999887664 999987532100 00 000112234
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
++.++++.+|+.. +..++.+.+|||||+||++|||+|+.+|++|||||||++||+.++..+.+.|++ .+.|+|+|
T Consensus 131 ~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiv 210 (259)
T PRK14274 131 IVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIV 210 (259)
T ss_pred HHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5666777777742 245788999999999999999999999999999999999999999999888754 36899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|||++++.++||+|++|++|++. ..|+.+++.
T Consensus 211 tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 242 (259)
T PRK14274 211 THNMQQAARVSDQTAFFYMGELV-ECNDTNKMF 242 (259)
T ss_pred EcCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 99999999999999999999974 557666553
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=339.05 Aligned_cols=209 Identities=20% Similarity=0.313 Sum_probs=168.9
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC-----ceeEEEcCCC-----------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN----------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-----~G~I~~~~~~----------- 160 (554)
+|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 589999999999889999999999999999999999999999999999999874 8999998743
Q ss_pred -ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 161 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
..|+|++|++.+++..|+.+|+....... . . .......+.+
T Consensus 84 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---------------~-~----------------------~~~~~~~~~~ 125 (252)
T PRK14272 84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLA---------------G-I----------------------RDRDHLMEVA 125 (252)
T ss_pred hceeEEEeccCccCcCCCHHHHHHHHHHhc---------------C-C----------------------CCHHHHHHHH
Confidence 15999999998888889999985322100 0 0 0000112233
Q ss_pred HHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 008771 240 SKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (554)
Q Consensus 240 ~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisH 314 (554)
.+++..+++. ....++++.+|||||+||++|||||+.+|++|||||||++||+.++.++.+.|++ .+.|+|++||
T Consensus 126 ~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH 205 (252)
T PRK14272 126 ERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTH 205 (252)
T ss_pred HHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 3444444432 1234778899999999999999999999999999999999999999999988754 3689999999
Q ss_pred CHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|++++..+||+|++|++|++. +.|..+++
T Consensus 206 ~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 234 (252)
T PRK14272 206 NMHQAARVSDTTSFFLVGDLV-EHGPTDQL 234 (252)
T ss_pred CHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999974 55665554
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=338.54 Aligned_cols=208 Identities=20% Similarity=0.302 Sum_probs=169.2
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC-----------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~----------- 160 (554)
.|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 58999999999888899999999999999999999999999999999999763 79999998743
Q ss_pred -ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 161 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
..|+|++|++.+++ .|+.+|+...... .. .......++++
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~~~---------------~~-----------------------~~~~~~~~~~~ 123 (250)
T PRK14240 83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRT---------------HG-----------------------IKDKKKLDEIV 123 (250)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHh---------------cC-----------------------CCCHHHHHHHH
Confidence 24899999988766 8999988532100 00 00001123445
Q ss_pred HHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 008771 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (554)
Q Consensus 240 ~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisH 314 (554)
.++++.+++.. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|||
T Consensus 124 ~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH 203 (250)
T PRK14240 124 EKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTH 203 (250)
T ss_pred HHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEe
Confidence 55666666532 245788899999999999999999999999999999999999999999888753 3789999999
Q ss_pred CHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|++++.++||+|++|++|++. ..|+.+++
T Consensus 204 ~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 232 (250)
T PRK14240 204 NMQQASRISDKTAFFLNGEIV-EFGDTVDL 232 (250)
T ss_pred CHHHHHhhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999985 44555543
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=341.95 Aligned_cols=207 Identities=27% Similarity=0.397 Sum_probs=171.5
Q ss_pred cEEEEeEEEEeC---------CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------
Q 008771 97 GVKLENISKSYK---------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~---------~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------- 160 (554)
+|+++||++.|+ ++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 589999999997 4789999999999999999999999999999999999999999999998753
Q ss_pred ------ceEEEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCc
Q 008771 161 ------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (554)
Q Consensus 161 ------~~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (554)
..++|++|++. +++..|+.+++...... . .....
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~--------------~------------------------~~~~~ 124 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH--------------L------------------------LSLDK 124 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHh--------------h------------------------ccCCH
Confidence 25999999973 44567888886421100 0 00011
Q ss_pred ccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCe
Q 008771 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVP 308 (554)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~t 308 (554)
.....++.++++.+|+.....++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|
T Consensus 125 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~t 204 (268)
T PRK10419 125 AERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTA 204 (268)
T ss_pred HHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcE
Confidence 122346778888999965567889999999999999999999999999999999999999998888877642 4889
Q ss_pred EEEEecCHHHHHhhcceEEEeeCCeeeeccCChh
Q 008771 309 MVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYS 342 (554)
Q Consensus 309 vIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~ 342 (554)
+|+||||++++..+||+|++|++|++. +.|+..
T Consensus 205 iiivsH~~~~i~~~~d~i~~l~~G~i~-~~g~~~ 237 (268)
T PRK10419 205 CLFITHDLRLVERFCQRVMVMDNGQIV-ETQPVG 237 (268)
T ss_pred EEEEECCHHHHHHhCCEEEEEECCEEe-eeCChh
Confidence 999999999999999999999999874 445443
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=331.27 Aligned_cols=189 Identities=28% Similarity=0.441 Sum_probs=161.4
Q ss_pred EEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------ceEEE
Q 008771 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAF 165 (554)
Q Consensus 100 ~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~~i~~ 165 (554)
++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 4799999998899999999999999999999999999999999999999999999998754 15999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.+++..|+.+|+...... .........+++.++++.
T Consensus 81 ~~q~~~~~~~~t~~e~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~ 121 (206)
T TIGR03608 81 LFQNFALIENETVEENLDLGLKY---------------------------------------KKLSKKEKREKKKEALEK 121 (206)
T ss_pred EecchhhccCCcHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHH
Confidence 99999888889999987532100 000111234567788899
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~ 322 (554)
+|+. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++++.+.|++ .+.|+|++|||++++ .+
T Consensus 122 ~~l~-~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~ 199 (206)
T TIGR03608 122 VGLN-LKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQ 199 (206)
T ss_pred cCch-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hh
Confidence 9985 456888999999999999999999999999999999999999999999988754 488999999999987 57
Q ss_pred cceEEEe
Q 008771 323 CTKIVET 329 (554)
Q Consensus 323 ~d~i~~l 329 (554)
||+|++|
T Consensus 200 ~d~i~~l 206 (206)
T TIGR03608 200 ADRVIEL 206 (206)
T ss_pred cCEEEeC
Confidence 9999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=335.92 Aligned_cols=205 Identities=30% Similarity=0.428 Sum_probs=174.1
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEecc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (554)
|+++|+++.|++. +|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence 4789999999865 8999999999999999999999999999999999999999999998743 259999999
Q ss_pred cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
+.+++..|+.+|+...+.. ...........+.++++.+|+.
T Consensus 80 ~~~~~~~t~~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~~l~ 120 (235)
T cd03299 80 YALFPHMTVYKNIAYGLKK---------------------------------------RKVDKKEIERKVLEIAEMLGID 120 (235)
T ss_pred CccCCCccHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHHcCCh
Confidence 9887789999998532100 0001122344567788889996
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcce
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~ 325 (554)
...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++++.+.|++ .+.|+|++||++.++.++||+
T Consensus 121 -~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~ 199 (235)
T cd03299 121 -HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADK 199 (235)
T ss_pred -hHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 567888999999999999999999999999999999999999999999988753 389999999999999999999
Q ss_pred EEEeeCCeeeeccCChhHH
Q 008771 326 IVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 326 i~~l~~g~~~~~~G~~~~~ 344 (554)
|++|++|++. ..|++++.
T Consensus 200 i~~l~~G~i~-~~~~~~~~ 217 (235)
T cd03299 200 VAIMLNGKLI-QVGKPEEV 217 (235)
T ss_pred EEEEECCEEE-EecCHHHH
Confidence 9999999874 55666544
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=334.17 Aligned_cols=195 Identities=27% Similarity=0.396 Sum_probs=164.6
Q ss_pred cEEEEeEEEEeCC-------eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEc--CC--C-----
Q 008771 97 GVKLENISKSYKG-------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA--KS--N----- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~-------~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~--~~--~----- 160 (554)
+|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |. +
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 3789999999962 479999999999999999999999999999999999999999999997 31 1
Q ss_pred ---------ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCC
Q 008771 161 ---------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (554)
Q Consensus 161 ---------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (554)
..++|++|++.+++..|+.+|+...... . ...
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~----------------~-----------------------~~~ 121 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLE----------------R-----------------------GVP 121 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHH----------------c-----------------------CCC
Confidence 2589999999888889999987532100 0 001
Q ss_pred cccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCe
Q 008771 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVP 308 (554)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~t 308 (554)
.....+++.++++.+|+.....++++.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|
T Consensus 122 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~t 201 (224)
T TIGR02324 122 REAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAA 201 (224)
T ss_pred HHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 1123446677888999975455788999999999999999999999999999999999999999999888753 4889
Q ss_pred EEEEecCHHHHHhhcceEEEee
Q 008771 309 MVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 309 vIiisHd~~~l~~~~d~i~~l~ 330 (554)
||+||||++++..+||+|+.+.
T Consensus 202 ii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 202 LIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred EEEEeCCHHHHHHhcceeEecC
Confidence 9999999999999999999864
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=307.08 Aligned_cols=198 Identities=27% Similarity=0.438 Sum_probs=171.7
Q ss_pred cEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------------
Q 008771 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------ 160 (554)
.|+++++++..+. ..+|++|+|.|++||.++||||+|||||||+-+++|+..|++|+|++.|..
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 5899999998853 469999999999999999999999999999999999999999999998753
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..||+|||.+.+.+++|..||++.+.. +.. -........
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPle---------------L~g------------------------e~~~~~~~~ 126 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLE---------------LRG------------------------ESSADSRAG 126 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhh---------------hcC------------------------CccccHHHH
Confidence 369999999999999999999865421 000 012334556
Q ss_pred HHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEEec
Q 008771 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISH 314 (554)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIiisH 314 (554)
+.++|..+||. ..+..+|.+|||||||||+||||++..|+||+.||||-+||..+-+.+.++| ++.|.|+|+|||
T Consensus 127 A~~lL~~vGLg-~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTH 205 (228)
T COG4181 127 AKALLEAVGLG-KRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTH 205 (228)
T ss_pred HHHHHHHhCcc-cccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeC
Confidence 88899999997 4668889999999999999999999999999999999999999887777765 568999999999
Q ss_pred CHHHHHhhcceEEEeeCCeee
Q 008771 315 DRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~ 335 (554)
|+.++.+ |+|++.|++|++.
T Consensus 206 D~~LA~R-c~R~~r~~~G~l~ 225 (228)
T COG4181 206 DPQLAAR-CDRQLRLRSGRLV 225 (228)
T ss_pred CHHHHHh-hhheeeeecceec
Confidence 9999987 9999999999874
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=355.27 Aligned_cols=197 Identities=26% Similarity=0.396 Sum_probs=168.2
Q ss_pred eEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------ceEEEEe
Q 008771 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLS 167 (554)
Q Consensus 102 ~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~~i~~v~ 167 (554)
||+++|++..+ |+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|++
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~ 81 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence 89999987664 8999999999999999999999999999999999999999988732 2489999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
|++.+++.+||.+|+...+.. ........++.++++.+|
T Consensus 82 q~~~l~~~~tv~enl~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~g 120 (354)
T TIGR02142 82 QEARLFPHLSVRGNLRYGMKR-----------------------------------------ARPSERRISFERVIELLG 120 (354)
T ss_pred cCCccCCCCcHHHHHHHHhhc-----------------------------------------cChhHHHHHHHHHHHHcC
Confidence 999988889999998532110 001122345778899999
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhc
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~ 323 (554)
|. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|+|+||||++++..+|
T Consensus 121 L~-~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~ 199 (354)
T TIGR02142 121 IG-HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLA 199 (354)
T ss_pred Ch-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 96 467899999999999999999999999999999999999999999988887653 4899999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhH
Q 008771 324 TKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~ 343 (554)
|+|++|++|++. ..|..++
T Consensus 200 d~i~~l~~G~i~-~~g~~~~ 218 (354)
T TIGR02142 200 DRVVVLEDGRVA-AAGPIAE 218 (354)
T ss_pred CEEEEEeCCEEE-EECCHHH
Confidence 999999999974 5565544
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=340.82 Aligned_cols=197 Identities=20% Similarity=0.310 Sum_probs=162.8
Q ss_pred CCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCC--------
Q 008771 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN-------- 160 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~-------- 160 (554)
...+|+++||+++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 10 ~~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 10 KNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred CCceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 3457999999999998899999999999999999999999999999999999987 699999998743
Q ss_pred ----ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH
Q 008771 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (554)
Q Consensus 161 ----~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (554)
..|+|+||++.+++ .||.+|+...... . ... ...+
T Consensus 90 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~---------------~------------------------~~~-~~~~ 128 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFP-KSIYENIAFGARI---------------N------------------------GYT-GDMD 128 (269)
T ss_pred HHHhhceEEEccCCccch-hhHHHHHhhhhhh---------------c------------------------CCc-HHHH
Confidence 14999999998766 5999998532100 0 000 0112
Q ss_pred HHHHHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEE
Q 008771 237 AKVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (554)
Q Consensus 237 ~~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIi 311 (554)
+++.++++.+++. ....++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+
T Consensus 129 ~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii 208 (269)
T PRK14259 129 ELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVI 208 (269)
T ss_pred HHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 3344555666552 1345788899999999999999999999999999999999999999999888753 3689999
Q ss_pred EecCHHHHHhhcceEEEeeC
Q 008771 312 ISHDRAFLDQLCTKIVETEM 331 (554)
Q Consensus 312 isHd~~~l~~~~d~i~~l~~ 331 (554)
||||++++..+||+|++|++
T Consensus 209 vtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 209 VTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred EeCCHHHHHHhcCEEEEEec
Confidence 99999999999999999997
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=338.22 Aligned_cols=207 Identities=20% Similarity=0.289 Sum_probs=170.7
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC----CceeEEEcCCC--------ceE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP----DSGNVIKAKSN--------MKI 163 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p----~~G~I~~~~~~--------~~i 163 (554)
..|+++|++++| ++++|+|+||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.++|.+ ..|
T Consensus 3 ~~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i 81 (254)
T PRK10418 3 QQIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKI 81 (254)
T ss_pred cEEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceE
Confidence 358999999999 67899999999999999999999999999999999999999 99999998754 259
Q ss_pred EEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 164 AFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 164 ~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
+|++|++. +.+..|+.+++..... .......+.++.+
T Consensus 82 ~~v~q~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~ 120 (254)
T PRK10418 82 ATIMQNPRSAFNPLHTMHTHARETCL-----------------------------------------ALGKPADDATLTA 120 (254)
T ss_pred EEEecCCccccCccccHHHHHHHHHH-----------------------------------------HcCCChHHHHHHH
Confidence 99999975 3344677766532100 0000112345777
Q ss_pred HhhhcCCCcc--ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 008771 242 LMPELGFTAD--DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (554)
Q Consensus 242 ~l~~lgl~~~--~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd 315 (554)
+++.+|+... ..++.+.+|||||+|||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||
T Consensus 121 ~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~ 200 (254)
T PRK10418 121 ALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHD 200 (254)
T ss_pred HHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 8888998642 45788999999999999999999999999999999999999999888887643 47899999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
++++..+||+|++|++|++ ...|+..++.
T Consensus 201 ~~~~~~~~d~v~~l~~G~i-~~~~~~~~~~ 229 (254)
T PRK10418 201 MGVVARLADDVAVMSHGRI-VEQGDVETLF 229 (254)
T ss_pred HHHHHHhCCEEEEEECCEE-EEecCHHHHh
Confidence 9999999999999999997 4567666543
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=344.85 Aligned_cols=209 Identities=22% Similarity=0.325 Sum_probs=173.5
Q ss_pred CccEEEEeEEEEeCC------eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-------
Q 008771 95 SSGVKLENISKSYKG------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------- 161 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~------~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------- 161 (554)
..+|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLW 81 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHH
Confidence 356999999999963 4699999999999999999999999999999999999999999999987431
Q ss_pred ----eEEEEeccccc-ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH
Q 008771 162 ----KIAFLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (554)
Q Consensus 162 ----~i~~v~Q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (554)
.++|+||++.. ++..||.+|+...... .........
T Consensus 82 ~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~---------------------------------------~~~~~~~~~ 122 (280)
T PRK13633 82 DIRNKAGMVFQNPDNQIVATIVEEDVAFGPEN---------------------------------------LGIPPEEIR 122 (280)
T ss_pred HHhhheEEEecChhhhhccccHHHHHHhhHhh---------------------------------------cCCCHHHHH
Confidence 48999999742 3446888887432100 001112334
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEE
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII 312 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIii 312 (554)
.++.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..|.+.|++ .|.|||+|
T Consensus 123 ~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillv 201 (280)
T PRK13633 123 ERVDESLKKVGMY-EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILI 201 (280)
T ss_pred HHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5678889999996 567899999999999999999999999999999999999999999999888753 48999999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|||++++.. ||+|++|++|++. +.|+..++.
T Consensus 202 tH~~~~~~~-~d~v~~l~~G~i~-~~g~~~~~~ 232 (280)
T PRK13633 202 THYMEEAVE-ADRIIVMDSGKVV-MEGTPKEIF 232 (280)
T ss_pred ecChHHHhc-CCEEEEEECCEEE-EecCHHHHh
Confidence 999999976 9999999999874 557766554
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=331.39 Aligned_cols=196 Identities=26% Similarity=0.364 Sum_probs=166.9
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEecc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (554)
++++|+++.|+. ++.|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEecc
Confidence 478999999974 5789999999999999999999999999999999999999999998753 249999999
Q ss_pred cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
+.+++..|+.+|+...+... .......+.++.++++.+|+.
T Consensus 79 ~~~~~~~t~~en~~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~l~ 119 (213)
T TIGR01277 79 NNLFAHLTVRQNIGLGLHPG---------------------------------------LKLNAEQQEKVVDAAQQVGIA 119 (213)
T ss_pred CccCCCCcHHHHHHhHhhcc---------------------------------------CCccHHHHHHHHHHHHHcCcH
Confidence 98888889999985321100 000011234567788899996
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcce
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~ 325 (554)
+..++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|+|+||||++++.++||+
T Consensus 120 -~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~ 198 (213)
T TIGR01277 120 -DYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQ 198 (213)
T ss_pred -HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCe
Confidence 456889999999999999999999999999999999999999999988887643 478999999999999999999
Q ss_pred EEEeeCCeee
Q 008771 326 IVETEMGVSR 335 (554)
Q Consensus 326 i~~l~~g~~~ 335 (554)
+++|++|++.
T Consensus 199 v~~l~~g~i~ 208 (213)
T TIGR01277 199 IAVVSQGKIK 208 (213)
T ss_pred EEEEECCeEE
Confidence 9999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=342.92 Aligned_cols=210 Identities=21% Similarity=0.288 Sum_probs=170.5
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~--------- 160 (554)
.+.|+++|++++|++..+|+|+||+|.+||+++|+|+||||||||+++|+|+.+ |++|+|.++|.+
T Consensus 37 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~ 116 (286)
T PRK14275 37 KPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV 116 (286)
T ss_pred ceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchH
Confidence 457999999999988889999999999999999999999999999999999864 499999998732
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|++|++.+++ .||.||+...... .. . ......+.
T Consensus 117 ~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~---------------~~-~----------------------~~~~~~~~ 157 (286)
T PRK14275 117 LLRKKIGMVFQKPNPFP-KSIFDNIAYGPRL---------------HG-I----------------------NDKKQLEE 157 (286)
T ss_pred HhhhcEEEECCCCCCCc-cCHHHHHHhHHHh---------------cC-C----------------------CcHHHHHH
Confidence 25999999998766 4999998532100 00 0 00011233
Q ss_pred HHHHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
++.++++.+|+. .+..++.+.+|||||+|||+|||||+.+|++|||||||++||+.++..+.+.|++ .+.|||+|
T Consensus 158 ~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIiv 237 (286)
T PRK14275 158 IVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIV 237 (286)
T ss_pred HHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 455566666663 2345788899999999999999999999999999999999999999999988864 25799999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|||++++..+||+|++|++|++. ..|...+.
T Consensus 238 sH~~~~~~~~~d~i~~L~~G~i~-~~g~~~~~ 268 (286)
T PRK14275 238 THNMQQASRVSDYTMFFYEGVLV-EHAPTAQL 268 (286)
T ss_pred eCCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999974 55665544
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-42 Score=329.79 Aligned_cols=190 Identities=23% Similarity=0.339 Sum_probs=164.6
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEEe
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS 167 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v~ 167 (554)
+|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 4789999999998899999999999999999999999999999999999999999999998743 2489999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
|++.+++..|+.+|+...... .. .....++.++++.+|
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~-----------------------------------------~~-~~~~~~~~~~l~~~g 118 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRL-----------------------------------------HG-PGDDEALWEALAQVG 118 (204)
T ss_pred CccccCcCCcHHHHHHHHHHh-----------------------------------------cC-ccHHHHHHHHHHHcC
Confidence 998887888999997532100 00 012345777889999
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcc
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d 324 (554)
+. ...++++.+|||||+||++||+||+.+|++|||||||++||+.++.++.++|++ .+.|||+||||++++..+.+
T Consensus 119 l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~ 197 (204)
T PRK13538 119 LA-GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKV 197 (204)
T ss_pred CH-HHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCc
Confidence 86 356889999999999999999999999999999999999999999999988754 48899999999999999888
Q ss_pred eEEEe
Q 008771 325 KIVET 329 (554)
Q Consensus 325 ~i~~l 329 (554)
|++++
T Consensus 198 ~~~~~ 202 (204)
T PRK13538 198 RKLRL 202 (204)
T ss_pred eEEec
Confidence 88776
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=341.61 Aligned_cols=209 Identities=19% Similarity=0.290 Sum_probs=171.9
Q ss_pred CCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCC--------
Q 008771 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN-------- 160 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~-------- 160 (554)
..++|+++||+++|+++.+|+|+||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred CCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 4567999999999988899999999999999999999999999999999999987 699999998743
Q ss_pred ----ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH
Q 008771 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (554)
Q Consensus 161 ----~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (554)
..++|++|++.+++. ||.+|+...... . ... ....
T Consensus 116 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~---------------~------------------------~~~-~~~~ 154 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPK-SIYDNVAYGLKI---------------Q------------------------GYD-GDID 154 (285)
T ss_pred HhhhccEEEEecCCccCcC-CHHHHHHHHHHH---------------c------------------------CCc-HHHH
Confidence 258999999877664 999987532100 0 000 0123
Q ss_pred HHHHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccC--CCeEEE
Q 008771 237 AKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVI 311 (554)
Q Consensus 237 ~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--g~tvIi 311 (554)
.++.++++.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.+.|++. +.|||+
T Consensus 155 ~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii 234 (285)
T PRK14254 155 ERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVI 234 (285)
T ss_pred HHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 45667778888742 3457889999999999999999999999999999999999999999998887642 579999
Q ss_pred EecCHHHHHhhcceEE-EeeCCeeeeccCChhHH
Q 008771 312 ISHDRAFLDQLCTKIV-ETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 312 isHd~~~l~~~~d~i~-~l~~g~~~~~~G~~~~~ 344 (554)
||||++++..+||+++ +|++|++. ..|+..++
T Consensus 235 ~tH~~~~i~~~~dri~v~l~~G~i~-~~g~~~~~ 267 (285)
T PRK14254 235 VTHNMQQAARISDKTAVFLTGGELV-EFDDTDKI 267 (285)
T ss_pred EeCCHHHHHhhcCEEEEEeeCCEEE-EeCCHHHH
Confidence 9999999999999975 57999975 44665543
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=343.24 Aligned_cols=207 Identities=25% Similarity=0.397 Sum_probs=172.8
Q ss_pred ccEEEEeEEEEeC--CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eE
Q 008771 96 SGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (554)
Q Consensus 96 ~~i~~~~ls~~y~--~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i 163 (554)
++|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 4699999999995 46799999999999999999999999999999999999999999999987432 48
Q ss_pred EEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 164 ~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
+|++|++. .++..|+.+|+...... ..........++.++
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~~~~ 126 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLEN---------------------------------------KKVPPKKMKDIIDDL 126 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHH---------------------------------------cCCCHHHHHHHHHHH
Confidence 99999974 55678999998532100 001112234467788
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---C-CCeEEEEecCHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAF 318 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~-g~tvIiisHd~~~ 318 (554)
++.+|+. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.++|++ . +.|||++|||+++
T Consensus 127 l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 205 (271)
T PRK13632 127 AKKVGME-DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE 205 (271)
T ss_pred HHHcCCH-HHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH
Confidence 8999986 467889999999999999999999999999999999999999999999888754 2 5899999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhHH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+. .||+|++|++|++. ..|+..++
T Consensus 206 ~~-~~d~v~~l~~G~i~-~~g~~~~~ 229 (271)
T PRK13632 206 AI-LADKVIVFSEGKLI-AQGKPKEI 229 (271)
T ss_pred Hh-hCCEEEEEECCEEE-EecCHHHH
Confidence 96 79999999999974 45665544
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=335.11 Aligned_cols=206 Identities=32% Similarity=0.479 Sum_probs=174.1
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEecc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (554)
|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+||+
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~ 80 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQH 80 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence 478999999998899999999999999999999999999999999999999999999998743 259999999
Q ss_pred cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
+.+++..|+.+|+...... . ........+.+.++++.+++.
T Consensus 81 ~~~~~~~t~~enl~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~ 121 (237)
T TIGR00968 81 YALFKHLTVRDNIAFGLEI---------------R------------------------KHPKAKIKARVEELLELVQLE 121 (237)
T ss_pred hhhccCCcHHHHHHhHHHh---------------c------------------------CCCHHHHHHHHHHHHHHcCCH
Confidence 9887788999987532100 0 000111234567788888885
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcce
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~ 325 (554)
...++.+.+|||||+||++|||||+.+|+++||||||++||+.+++++.++|++ .+.|||++||+++++.++||+
T Consensus 122 -~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~ 200 (237)
T TIGR00968 122 -GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADR 200 (237)
T ss_pred -hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCE
Confidence 567888999999999999999999999999999999999999999999988753 378999999999999999999
Q ss_pred EEEeeCCeeeeccCChhHH
Q 008771 326 IVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 326 i~~l~~g~~~~~~G~~~~~ 344 (554)
|++|++|++. ..|+.+++
T Consensus 201 i~~l~~g~i~-~~~~~~~~ 218 (237)
T TIGR00968 201 IVVMSNGKIE-QIGSPDEV 218 (237)
T ss_pred EEEEECCEEE-EecCHHHH
Confidence 9999999974 45655544
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=341.53 Aligned_cols=210 Identities=23% Similarity=0.330 Sum_probs=172.4
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~--------- 160 (554)
.++|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 4578999999999989999999999999999999999999999999999999985 79999998742
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..|+|++|++.+++ .|+.+|+....... . ..........
T Consensus 99 ~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~---------------~-----------------------~~~~~~~~~~ 139 (276)
T PRK14271 99 FRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH---------------K-----------------------LVPRKEFRGV 139 (276)
T ss_pred HhhheEEeccCCccCC-ccHHHHHHHHHHhc---------------c-----------------------CCCHHHHHHH
Confidence 25899999988766 79999875321000 0 0001112234
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+.++++.+|+.. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.++++|.+.|++ .+.|||+||
T Consensus 140 ~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivs 219 (276)
T PRK14271 140 AQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVT 219 (276)
T ss_pred HHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 556677777753 235678899999999999999999999999999999999999999999888754 258999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||++++.++||+|++|++|++. ..|+.+++
T Consensus 220 H~~~~~~~~~dri~~l~~G~i~-~~g~~~~~ 249 (276)
T PRK14271 220 HNLAQAARISDRAALFFDGRLV-EEGPTEQL 249 (276)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999874 45665554
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=336.87 Aligned_cols=208 Identities=22% Similarity=0.286 Sum_probs=170.5
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC-----------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~----------- 160 (554)
+|+++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 58999999999888899999999999999999999999999999999999874 89999998732
Q ss_pred -ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 161 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
..++|++|++.++. .|+.+|+....... . .......+..+
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---------------~-----------------------~~~~~~~~~~~ 123 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIH---------------G-----------------------VKSKHKLDRIV 123 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHc---------------C-----------------------CCcHHHHHHHH
Confidence 25999999988766 89999985321100 0 00001123345
Q ss_pred HHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 008771 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (554)
Q Consensus 240 ~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisH 314 (554)
.++++.+|+.. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|+|+|||
T Consensus 124 ~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH 203 (250)
T PRK14262 124 EESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTH 203 (250)
T ss_pred HHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 56667777642 235788899999999999999999999999999999999999999999988754 3689999999
Q ss_pred CHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|++++..+||+|++|++|++. ..|+.++.
T Consensus 204 ~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 232 (250)
T PRK14262 204 NIGQAIRIADYIAFMYRGELI-EYGPTREI 232 (250)
T ss_pred CHHHHHHhCCEEEEEECCEEE-EecCHHHH
Confidence 999999999999999999985 45665543
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=355.94 Aligned_cols=205 Identities=24% Similarity=0.337 Sum_probs=174.7
Q ss_pred EeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCC----C--------------ce
Q 008771 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----N--------------MK 162 (554)
Q Consensus 101 ~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~----~--------------~~ 162 (554)
.++.++|+...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. + ..
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 45677888889999999999999999999999999999999999999999999999873 1 25
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
|+|+||++.+++..||.+|+...... ..+...+.+.++.++
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~---------------------------------------~g~~~~~~~~~a~e~ 148 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEM---------------------------------------QGMPEAERRKRVDEQ 148 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHH
Confidence 99999999998999999998643100 001112334567888
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAF 318 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~ 318 (554)
++.+||. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|. +.++||||||||+++
T Consensus 149 le~vgL~-~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e 227 (382)
T TIGR03415 149 LELVGLA-QWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDE 227 (382)
T ss_pred HHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999996 56789999999999999999999999999999999999999999999888764 248999999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+.++||+|++|++|++. ..|+.+++..
T Consensus 228 ~~~l~DrI~vl~~G~iv-~~g~~~ei~~ 254 (382)
T TIGR03415 228 ALKIGNRIAIMEGGRII-QHGTPEEIVL 254 (382)
T ss_pred HHHhCCEEEEEECCEEE-EecCHHHHhh
Confidence 99999999999999974 5566665543
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=336.59 Aligned_cols=208 Identities=19% Similarity=0.280 Sum_probs=168.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC-----ceeEEEcCCC----------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN---------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-----~G~I~~~~~~---------- 160 (554)
+.|+++|++++|+++.+|+|+||+|.+|++++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred ceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 4689999999999888999999999999999999999999999999999999997 6999987642
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..++|++|++.+++ .|+.+|+...... .. . ......+..
T Consensus 83 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~-~----------------------~~~~~~~~~ 123 (251)
T PRK14249 83 LRKRVGMVFQQPNPFP-KSIFDNVAFGPRM---------------LG-T----------------------TAQSRLDEV 123 (251)
T ss_pred hhceEEEEecCCccCc-CcHHHHHhhHHHh---------------cC-C----------------------ChhhHHHHH
Confidence 24999999998776 4999998532100 00 0 000012233
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+.++++.+|+.. ...++.+.+|||||+|||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||
T Consensus 124 ~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivs 203 (251)
T PRK14249 124 VEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVT 203 (251)
T ss_pred HHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 444555555531 245788899999999999999999999999999999999999999999888754 478999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~ 343 (554)
||++++..+||+|++|++|++. +.|+..+
T Consensus 204 h~~~~~~~~~d~i~~l~~G~i~-~~~~~~~ 232 (251)
T PRK14249 204 HNMQQAARASDWTGFLLTGDLV-EYGRTGE 232 (251)
T ss_pred CCHHHHHhhCCEEEEEeCCeEE-EeCCHHH
Confidence 9999999999999999999874 4455544
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=339.47 Aligned_cols=244 Identities=21% Similarity=0.371 Sum_probs=204.7
Q ss_pred hhHHHHhccCcchhhhhhhccccCCCCC---CCCCccEEEEeEEEEeCC-----------eeeEEceeEEEECCCEEEEE
Q 008771 64 SDVESLFSSSADEFENKKYSNKQSNTGA---SSISSGVKLENISKSYKG-----------VTVLKDVTWEVKKGEKVGLV 129 (554)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~ls~~y~~-----------~~~l~~isl~i~~Ge~~~lv 129 (554)
+..+++|..|+++|++......+...++ ...++.++.+++.+.|.- ..++++|||++++|+.+|||
T Consensus 240 ~~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlV 319 (534)
T COG4172 240 GTTETLFAAPQHPYTRKLLAAEPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLV 319 (534)
T ss_pred CcHHHHhhCCCChHHHHHHhcCCCCCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEE
Confidence 4578899999999999888776554332 234578999999999931 24899999999999999999
Q ss_pred CCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-------------eEEEEeccc--ccccCccHHHHHHHhhHHHHHHHH
Q 008771 130 GVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------------KIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAG 194 (554)
Q Consensus 130 G~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-------------~i~~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~ 194 (554)
|+||||||||-++|.+++++. |+|.++|.++ ++-.||||| .+.|.+||.+.+..++. ++
T Consensus 320 GESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~----vh- 393 (534)
T COG4172 320 GESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLR----VH- 393 (534)
T ss_pred ecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhh----hc-
Confidence 999999999999999999877 9999998643 588999998 46678899887754421 00
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHH
Q 008771 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274 (554)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 274 (554)
+ ...+..+.++++.+.|.++||++...+|+|+++|||||||++|||||
T Consensus 394 ---------~-----------------------~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAl 441 (534)
T COG4172 394 ---------E-----------------------PKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARAL 441 (534)
T ss_pred ---------C-----------------------CCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHH
Confidence 0 02344566788999999999999999999999999999999999999
Q ss_pred ccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 275 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+.+|++++||||||+||......+.++|+ +++.+.+|||||+..+..+||+|++|.+|+++ -.|+.++...
T Consensus 442 iLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiV-E~G~~~~if~ 516 (534)
T COG4172 442 ILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIV-EQGPTEAVFA 516 (534)
T ss_pred hcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEe-eeCCHHHHhc
Confidence 99999999999999999988888777764 57999999999999999999999999999985 4566665544
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=340.60 Aligned_cols=210 Identities=23% Similarity=0.295 Sum_probs=172.9
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC--------ceeEEEcCCCc-------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD--------SGNVIKAKSNM------- 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~--------~G~I~~~~~~~------- 161 (554)
+|+++|++++|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 389999999999889999999999999999999999999999999999999998 99999987432
Q ss_pred ---eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 162 ---~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
.++|+||++..++..|+.+|+......... . ...........
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~-------------~----------------------~~~~~~~~~~~ 125 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHAR-------------R----------------------AGALTHRDGEI 125 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhccccccc-------------c----------------------cccCCHHHHHH
Confidence 389999998766778999998542100000 0 00000112345
Q ss_pred HHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc---------cCCCeEeecCCCCCCCHHHHHHHHHHHcc----C
Q 008771 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL---------QDPDLLLLDEPTNHLDLDTIEWLEGYLGK----Q 305 (554)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~---------~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~ 305 (554)
+.++++.+|+.. ..++++.+|||||+|||+|||||+ .+|++|||||||++||+.+++.+.+.|++ .
T Consensus 126 ~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~ 204 (272)
T PRK13547 126 AWQALALAGATA-LVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDW 204 (272)
T ss_pred HHHHHHHcCcHh-hhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhc
Confidence 677888899863 568889999999999999999999 59999999999999999999999888753 3
Q ss_pred CCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhH
Q 008771 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 306 g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~ 343 (554)
+.|||+||||++++.++||+|++|++|++. +.|+..+
T Consensus 205 ~~tviiisH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~ 241 (272)
T PRK13547 205 NLGVLAIVHDPNLAARHADRIAMLADGAIV-AHGAPAD 241 (272)
T ss_pred CCEEEEEECCHHHHHHhCCEEEEEECCeEE-EecCHHH
Confidence 899999999999999999999999999874 4565443
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=336.50 Aligned_cols=203 Identities=22% Similarity=0.322 Sum_probs=164.8
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC--C---CceeEEEcCCC----------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSN---------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--p---~~G~I~~~~~~---------- 160 (554)
.+|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++ | ++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred ceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 46999999999998889999999999999999999999999999999999875 5 59999998743
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..|+|++|++.+++ .|+.+|+...... .. . ......+.+
T Consensus 84 ~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~---------------~~-~----------------------~~~~~~~~~ 124 (252)
T PRK14255 84 LRKQVGMVFQQPNPFP-FSIYENVIYGLRL---------------AG-V----------------------KDKAVLDEA 124 (252)
T ss_pred hcCeEEEEECCCccCC-CcHHHHHHHHHHH---------------cC-C----------------------CCHHHHHHH
Confidence 25999999988766 6999997532110 00 0 000011223
Q ss_pred HHHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+.+.++.+++. ....++.+.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|+|+||
T Consensus 125 ~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vs 204 (252)
T PRK14255 125 VETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVT 204 (252)
T ss_pred HHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEE
Confidence 44445555542 1245778899999999999999999999999999999999999999999888754 258999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeec
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTY 337 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~ 337 (554)
||++++.++||+|++|++|++..+
T Consensus 205 H~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 205 HSMHQASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999998654
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=343.64 Aligned_cols=209 Identities=22% Similarity=0.359 Sum_probs=175.0
Q ss_pred ccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCc---eeEEEcCCC----------
Q 008771 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS---GNVIKAKSN---------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~---G~I~~~~~~---------- 160 (554)
.+|+++|+++.|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++ |+|.++|.+
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 46999999999964 469999999999999999999999999999999999999988 899998753
Q ss_pred ceEEEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 161 MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 161 ~~i~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
..|||++|++. .++..||.+|+...... ......+..+++
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~ 124 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLEN---------------------------------------RAVPRPEMIKIV 124 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHh---------------------------------------CCCCHHHHHHHH
Confidence 25899999985 56678999998532100 001112334567
Q ss_pred HHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 008771 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (554)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd 315 (554)
.++++.+|+. ...++++.+|||||+||++||+||+.+|++|||||||++||+.++..|.+.|++ .|.|||+||||
T Consensus 125 ~~~l~~~~L~-~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~ 203 (282)
T PRK13640 125 RDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD 203 (282)
T ss_pred HHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 8889999996 467899999999999999999999999999999999999999999999888743 48899999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
++++. .||+|++|++|++. ..|+.+++..
T Consensus 204 ~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~~ 232 (282)
T PRK13640 204 IDEAN-MADQVLVLDDGKLL-AQGSPVEIFS 232 (282)
T ss_pred HHHHH-hCCEEEEEECCEEE-EeCCHHHHhc
Confidence 99995 79999999999975 5566665543
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=336.26 Aligned_cols=213 Identities=22% Similarity=0.302 Sum_probs=170.0
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCC--CCCceeEEEcCCC-----------ceE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN-----------MKI 163 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p~~G~I~~~~~~-----------~~i 163 (554)
+|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|++ +|++|+|.++|.+ ..|
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 478999999999888999999999999999999999999999999999995 6999999998853 249
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+|++|++.+++..++.+++...... + .. . .....+.......++.+++
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~----------~----~~--------------~----~~~~~~~~~~~~~~~~~~l 128 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNA----------V----RS--------------Y----RGQEPLDRFDFQDLMEEKI 128 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhh----------h----hc--------------c----cccccchHHHHHHHHHHHH
Confidence 9999998776665654443211000 0 00 0 0000011122345677888
Q ss_pred hhcCCCccccCCCCC-CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 008771 244 PELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~-~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l 319 (554)
+.++++....++.+. +|||||||||+|||||+.+|++|||||||++||+.+++++.+.++ +.++|||+||||++++
T Consensus 129 ~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~ 208 (248)
T PRK09580 129 ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRIL 208 (248)
T ss_pred HHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 889986555677775 799999999999999999999999999999999999999988664 4578999999999999
Q ss_pred Hhh-cceEEEeeCCeeeeccCChh
Q 008771 320 DQL-CTKIVETEMGVSRTYEGNYS 342 (554)
Q Consensus 320 ~~~-~d~i~~l~~g~~~~~~G~~~ 342 (554)
..+ ||+|++|++|++ .+.|+++
T Consensus 209 ~~~~~d~i~~l~~g~i-~~~g~~~ 231 (248)
T PRK09580 209 DYIKPDYVHVLYQGRI-VKSGDFT 231 (248)
T ss_pred HhhhCCEEEEEECCeE-EEeCCHH
Confidence 887 899999999987 4667766
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=342.22 Aligned_cols=209 Identities=24% Similarity=0.337 Sum_probs=174.1
Q ss_pred ccEEEEeEEEEeCC---eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------e
Q 008771 96 SGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (554)
Q Consensus 96 ~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~ 162 (554)
.+|+++||+++|++ .++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence 36899999999974 3599999999999999999999999999999999999999999999987432 4
Q ss_pred EEEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 163 IAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 163 i~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
|+|++|++. .++..||.+|+...... .........+++..
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~~~~ 123 (277)
T PRK13642 83 IGMVFQNPDNQFVGATVEDDVAFGMEN---------------------------------------QGIPREEMIKRVDE 123 (277)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHH---------------------------------------cCCCHHHHHHHHHH
Confidence 899999984 56678999998532100 00011123345777
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~ 317 (554)
+++.+|+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++..|.+.++ +.|.|||+||||++
T Consensus 124 ~l~~~~l~-~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~ 202 (277)
T PRK13642 124 ALLAVNML-DFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD 202 (277)
T ss_pred HHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 88888985 46788999999999999999999999999999999999999999999988874 24899999999999
Q ss_pred HHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
++. .||+|++|++|++. ..|+.+++..
T Consensus 203 ~~~-~~d~i~~l~~G~i~-~~g~~~~~~~ 229 (277)
T PRK13642 203 EAA-SSDRILVMKAGEII-KEAAPSELFA 229 (277)
T ss_pred HHH-hCCEEEEEECCEEE-EeCCHHHHhc
Confidence 997 59999999999974 5677666543
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=341.48 Aligned_cols=207 Identities=24% Similarity=0.411 Sum_probs=172.3
Q ss_pred ccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eE
Q 008771 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (554)
Q Consensus 96 ~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i 163 (554)
++|+++|++++|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 46999999999975 3599999999999999999999999999999999999999999999988532 48
Q ss_pred EEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 164 ~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
+|++|++. +++..|+.+|+...... .........+++.++
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~ 126 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLEN---------------------------------------HAVPYDEMHRRVSEA 126 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHh---------------------------------------cCCCHHHHHHHHHHH
Confidence 99999985 55677888887432100 000111223456778
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~ 318 (554)
++.+|+. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||+++
T Consensus 127 l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~ 205 (269)
T PRK13648 127 LKQVDML-ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE 205 (269)
T ss_pred HHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH
Confidence 8889986 466888999999999999999999999999999999999999999999888753 47899999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhHH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+.. ||+|++|++|++. +.|+.+++
T Consensus 206 ~~~-~d~i~~l~~G~i~-~~g~~~~~ 229 (269)
T PRK13648 206 AME-ADHVIVMNKGTVY-KEGTPTEI 229 (269)
T ss_pred Hhc-CCEEEEEECCEEE-EecCHHHH
Confidence 985 9999999999974 45665544
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=335.70 Aligned_cols=208 Identities=19% Similarity=0.302 Sum_probs=169.5
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC-----------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~----------- 160 (554)
+|+++|+++.|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 82 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence 58999999999988899999999999999999999999999999999999986 59999998742
Q ss_pred ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 161 ~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
..++|++|++.+++ .||.+|+...... .. . ......++++.
T Consensus 83 ~~i~~~~q~~~~~~-~tv~~~l~~~~~~---------------~~-~----------------------~~~~~~~~~~~ 123 (249)
T PRK14253 83 IKVGMVFQKPNPFP-MSIYENVAYGLRA---------------QG-I----------------------KDKKVLDEVVE 123 (249)
T ss_pred hheeEEecCCCcCc-ccHHHHHHhHHHh---------------cC-C----------------------CchHHHHHHHH
Confidence 24999999988776 7999998532100 00 0 00011233455
Q ss_pred HHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecC
Q 008771 241 KLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD 315 (554)
Q Consensus 241 ~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd 315 (554)
++++.+|+.. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|||+
T Consensus 124 ~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~ 203 (249)
T PRK14253 124 RSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHS 203 (249)
T ss_pred HHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 5666666532 345778899999999999999999999999999999999999999999888754 36899999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
++++..+||+|++|++|++. ..|+.+++
T Consensus 204 ~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 231 (249)
T PRK14253 204 MQQARRISDRTAFFLMGELV-EHDDTQVI 231 (249)
T ss_pred HHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999975 44655443
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=340.13 Aligned_cols=210 Identities=20% Similarity=0.293 Sum_probs=168.2
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~--------- 160 (554)
.++|+++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 22 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred ceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 357999999999988889999999999999999999999999999999999987 699999998743
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|+||++.+++ .|+.+|+....... . .. .....+.
T Consensus 102 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~---------------~-~~----------------------~~~~~~~ 142 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIH---------------G-IK----------------------DKKTLDE 142 (271)
T ss_pred HHhhhEEEEecCCcccc-ccHHHHHHHHHHhc---------------C-CC----------------------cHHHHHH
Confidence 24999999988765 59999985321100 0 00 0001122
Q ss_pred HHHHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
.+.++++.+++. ....++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|
T Consensus 143 ~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiv 222 (271)
T PRK14238 143 IVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIV 222 (271)
T ss_pred HHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEE
Confidence 234444444321 1235678899999999999999999999999999999999999999999988754 36899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|||++++..+||+|++|++|++. ..|+..++
T Consensus 223 sH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~ 253 (271)
T PRK14238 223 THNMQQAARISDKTAFFLNGYVN-EYDDTDKI 253 (271)
T ss_pred EcCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999985 45666554
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=334.99 Aligned_cols=191 Identities=28% Similarity=0.446 Sum_probs=160.0
Q ss_pred EEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEEe-ccccccc
Q 008771 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS-QEFEVSM 174 (554)
Q Consensus 105 ~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v~-Q~~~~~~ 174 (554)
+.|+.+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++ |++.+++
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 55677789999999999999999999999999999999999999999999998743 2589998 5566777
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccC
Q 008771 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (554)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (554)
..|+.+|+..... +. ....+....++..+++.+|+. ...+
T Consensus 109 ~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~gl~-~~~~ 148 (236)
T cd03267 109 DLPVIDSFYLLAA---------------IY------------------------DLPPARFKKRLDELSELLDLE-ELLD 148 (236)
T ss_pred CCcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHcCCh-hHhc
Confidence 8899998742100 00 001112334566778888986 4568
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceEEEee
Q 008771 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 255 ~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i~~l~ 330 (554)
+++.+|||||+||++||+||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||++++..+||+|++|+
T Consensus 149 ~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~ 228 (236)
T cd03267 149 TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVID 228 (236)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 88999999999999999999999999999999999999999999998753 37899999999999999999999999
Q ss_pred CCeee
Q 008771 331 MGVSR 335 (554)
Q Consensus 331 ~g~~~ 335 (554)
+|++.
T Consensus 229 ~G~i~ 233 (236)
T cd03267 229 KGRLL 233 (236)
T ss_pred CCEEE
Confidence 99874
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=377.50 Aligned_cols=212 Identities=21% Similarity=0.344 Sum_probs=178.1
Q ss_pred CccEEEEeEEEEeCC-----------eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---
Q 008771 95 SSGVKLENISKSYKG-----------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~-----------~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--- 160 (554)
.++|+++||++.|+. ..+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 357999999999961 469999999999999999999999999999999999999999999998742
Q ss_pred ----------ceEEEEeccc--ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHH
Q 008771 161 ----------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228 (554)
Q Consensus 161 ----------~~i~~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (554)
..|+||||++ .+++..||.+++...+.. . .
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~---------------~-----------------------~ 432 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRV---------------H-----------------------G 432 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHH---------------c-----------------------C
Confidence 2599999997 467788999998532100 0 0
Q ss_pred hCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----c
Q 008771 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (554)
Q Consensus 229 ~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~ 304 (554)
.........++.++|+.+||+....++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+ +
T Consensus 433 ~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~ 512 (623)
T PRK10261 433 LLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD 512 (623)
T ss_pred CCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 000112345678899999996556789999999999999999999999999999999999999999999988873 3
Q ss_pred CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 305 ~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
.|.|||+||||++++..+||+|++|++|+++ ..|...++.
T Consensus 513 ~g~tvi~isHdl~~v~~~~dri~vl~~G~iv-~~g~~~~i~ 552 (623)
T PRK10261 513 FGIAYLFISHDMAVVERISHRVAVMYLGQIV-EIGPRRAVF 552 (623)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHHHHh
Confidence 5899999999999999999999999999974 567665543
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=330.14 Aligned_cols=197 Identities=26% Similarity=0.410 Sum_probs=167.5
Q ss_pred EEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------
Q 008771 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (554)
Q Consensus 98 i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------- 160 (554)
|+++|+++.|++ +.+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 789999999974 679999999999999999999999999999999999999999999998753
Q ss_pred ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 161 ~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
..|+|++|++.+++..|+.+|+...... . .....+..+.++.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~---------------~-----------------------~~~~~~~~~~~~~ 123 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALEL---------------Q-----------------------PNLSYQEARERAR 123 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHh---------------c-----------------------cCCCHHHHHHHHH
Confidence 2599999999888888999987532100 0 0011122345678
Q ss_pred HHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCH
Q 008771 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316 (554)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~ 316 (554)
++++.+|+. ...++.+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|+|+||||+
T Consensus 124 ~~l~~~~l~-~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~ 202 (220)
T TIGR02982 124 AMLEAVGLG-DHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN 202 (220)
T ss_pred HHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 889999995 566888999999999999999999999999999999999999999888877643 489999999999
Q ss_pred HHHHhhcceEEEeeCCee
Q 008771 317 AFLDQLCTKIVETEMGVS 334 (554)
Q Consensus 317 ~~l~~~~d~i~~l~~g~~ 334 (554)
+.. ++||+|++|++|++
T Consensus 203 ~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 203 RIL-DVADRIVHMEDGKL 219 (220)
T ss_pred HHH-hhCCEEEEEECCEE
Confidence 965 69999999999864
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=327.27 Aligned_cols=186 Identities=25% Similarity=0.404 Sum_probs=162.9
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEEec
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v~Q 168 (554)
|+++|+++.|+++.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecc
Confidence 478999999998899999999999999999999999999999999999999999999998744 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++..|+.+|+..... ...++++.++++.+|+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~---------------------------------------------~~~~~~~~~~l~~~~l 115 (201)
T cd03231 81 APGIKTTLSVLENLRFWHA---------------------------------------------DHSDEQVEEALARVGL 115 (201)
T ss_pred ccccCCCcCHHHHHHhhcc---------------------------------------------cccHHHHHHHHHHcCC
Confidence 9988888999998753100 0013456777888888
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcce
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~ 325 (554)
. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++++.+.|++ .|.|+|+||||...+..+|++
T Consensus 116 ~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~ 194 (201)
T cd03231 116 N-GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGAR 194 (201)
T ss_pred h-hhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccce
Confidence 6 346788999999999999999999999999999999999999999999988753 489999999999999999999
Q ss_pred EEEe
Q 008771 326 IVET 329 (554)
Q Consensus 326 i~~l 329 (554)
++.+
T Consensus 195 ~~~~ 198 (201)
T cd03231 195 ELDL 198 (201)
T ss_pred eEec
Confidence 9876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=335.95 Aligned_cols=209 Identities=18% Similarity=0.257 Sum_probs=170.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC----------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~---------- 160 (554)
+.|+++|+++.|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 358999999999988899999999999999999999999999999999999985 58999998743
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..|+|++|++.+++ .|+.+|+....... . ..........
T Consensus 86 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~---------------~-----------------------~~~~~~~~~~ 126 (259)
T PRK14260 86 LRRQIGMVFQRPNPFP-MSIYENVAYGVRIS---------------A-----------------------KLPQADLDEI 126 (259)
T ss_pred hhhheEEEecccccCC-ccHHHHHHHHHHHh---------------c-----------------------CCCHHHHHHH
Confidence 25999999998776 89999985321100 0 0001122334
Q ss_pred HHHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+.++++.+|+. ....++.+.+|||||+|||+|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||+||
T Consensus 127 ~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~t 206 (259)
T PRK14260 127 VESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVT 206 (259)
T ss_pred HHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 55666767763 1345788899999999999999999999999999999999999999999888753 368999999
Q ss_pred cCHHHHHhhcceEEEee-----CCeeeeccCChhHH
Q 008771 314 HDRAFLDQLCTKIVETE-----MGVSRTYEGNYSQY 344 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~-----~g~~~~~~G~~~~~ 344 (554)
||++++.++||++++|+ +|+++ ..|+..++
T Consensus 207 H~~~~i~~~~d~i~~l~~~~~~~G~i~-~~~~~~~~ 241 (259)
T PRK14260 207 HNMQQATRVSDFTAFFSTDESRIGQMV-EFGVTTQI 241 (259)
T ss_pred CCHHHHHHhcCeEEEEeccCCCCceEE-EeCCHHHH
Confidence 99999999999999997 48764 55666554
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=339.92 Aligned_cols=376 Identities=26% Similarity=0.352 Sum_probs=236.2
Q ss_pred eEEEEeCCeeeEEceeE-EEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCcc-HH
Q 008771 102 NISKSYKGVTVLKDVTW-EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT-VR 179 (554)
Q Consensus 102 ~ls~~y~~~~~l~~isl-~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~t-v~ 179 (554)
++..+|+.. -|+=..| ..++|.++||+|+||-||||-+|+|+|.+.|.=|.-. +.... ++..-.|..| +.
T Consensus 79 e~vHRYg~N-gFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~--~pp~w-----deVi~~FrGtELq 150 (591)
T COG1245 79 EVVHRYGVN-GFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE--DPPSW-----DEVIKRFRGTELQ 150 (591)
T ss_pred cceeeccCC-ceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCC--CCCCH-----HHHHHHhhhhHHH
Confidence 456788632 1111222 3458999999999999999999999999999877531 10000 0000001111 11
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHH-HHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCC
Q 008771 180 EEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD-EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (554)
Q Consensus 180 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~ 258 (554)
++|...+........+.+.+ +.+-.... .-.++... ....-..+++.+.++|. ..++|.++
T Consensus 151 ~YF~~l~~g~~r~v~K~QYV-----------d~iPk~~KG~v~elLk~------~de~g~~devve~l~L~-nvl~r~v~ 212 (591)
T COG1245 151 NYFKKLYEGELRAVHKPQYV-----------DLIPKVVKGKVGELLKK------VDERGKFDEVVERLGLE-NVLDRDVS 212 (591)
T ss_pred HHHHHHHcCCcceecchHHH-----------HHHHHHhcchHHHHHHh------hhhcCcHHHHHHHhcch-hhhhhhhh
Confidence 11111110000000000000 00000000 00000000 01112467788889986 46799999
Q ss_pred CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcceEEEee--CCe
Q 008771 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETE--MGV 333 (554)
Q Consensus 259 ~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~~~d~i~~l~--~g~ 333 (554)
+|||||-||++||.++++++|++++|||||+||...+-...+.++ +.+++||+|.||+..++.++|-|.++. .|.
T Consensus 213 ~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG~pg~ 292 (591)
T COG1245 213 ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYGEPGV 292 (591)
T ss_pred hcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEecCCcc
Confidence 999999999999999999999999999999999987655544443 338999999999999999999988874 443
Q ss_pred eeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhhccccccccceee
Q 008771 334 SRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIR 413 (554)
Q Consensus 334 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 413 (554)
.-+..-+|+ .+..++.+-.+. +..++..-+ +..+.|.
T Consensus 293 YGvvs~p~s--------------------------vr~gIN~yL~Gy--------------l~~EN~R~R---~~~I~F~ 329 (591)
T COG1245 293 YGVVSKPKS--------------------------VRVGINEYLKGY--------------LPEENVRFR---PEEIEFE 329 (591)
T ss_pred ceEeccchH--------------------------HHHHHHHHHhcc--------------Cchhccccc---ccceeee
Confidence 323333332 111111111110 111111111 1223333
Q ss_pred ccCCC-CCC-CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEE
Q 008771 414 FPERG-RSG-RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN 491 (554)
Q Consensus 414 ~~~~~-~~~-~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~ 491 (554)
..+.. ..+ +.+++..++.+.|++. .|+--.-+|+.||+++++||||.||||+.++|+|.++|++|. ..++++.
T Consensus 330 ~~~~~~~~~~~~lv~y~~~~k~~g~F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~~vS 404 (591)
T COG1245 330 EKPPRDDKARDTLVEYPDLKKTYGDF-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDLKVS 404 (591)
T ss_pred ccCcccccccceeeecchheeecCce-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----CccceEe
Confidence 32221 223 7788999999999863 334345678889999999999999999999999999999997 3467788
Q ss_pred EEecccccCCCCCCCHHHHHHhhccc-CCHH-HHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAAED-WRID-DIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~-~~~~-~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|-+|... -+.+.||.+.+...... +... .--+++..+.+ .+.+++++..|||||.|||++
T Consensus 405 yKPQyI~--~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l-~~i~e~~v~~LSGGELQRvaI 466 (591)
T COG1245 405 YKPQYIS--PDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNL-EDLLERPVDELSGGELQRVAI 466 (591)
T ss_pred ecceeec--CCCCCcHHHHHHHhhhhhcccchhHHhhcCccch-HHHHhcccccCCchhHHHHHH
Confidence 8888643 44788999999876543 2222 23457788888 468899999999999999975
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=335.44 Aligned_cols=212 Identities=17% Similarity=0.293 Sum_probs=173.7
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcC------CC--------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK------SN-------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~------~~-------- 160 (554)
.++|+++|++++|+++.+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 8 ~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 8 EDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred hhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 4669999999999999999999999999999999999999999999999999999997766554 22
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..++|++|++.+++..|+.+|+...... .. .........+
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~---------------~~-----------------------~~~~~~~~~~ 129 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKS---------------HG-----------------------IKEKREIKKI 129 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHh---------------cC-----------------------CCCHHHHHHH
Confidence 2589999999888888999998532100 00 0001122345
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+.++++.+|+.. ...++.+..||||||||++|||||+.+|++|||||||++||+.++.++.+.|.+ .+.|||+||
T Consensus 130 ~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvs 209 (257)
T PRK14246 130 VEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVS 209 (257)
T ss_pred HHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEE
Confidence 667778888752 345778899999999999999999999999999999999999999999988753 368999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
||++++..+||++++|++|++.. .|..+++.
T Consensus 210 h~~~~~~~~~d~v~~l~~g~i~~-~g~~~~~~ 240 (257)
T PRK14246 210 HNPQQVARVADYVAFLYNGELVE-WGSSNEIF 240 (257)
T ss_pred CCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999999999998854 45544443
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=334.27 Aligned_cols=214 Identities=20% Similarity=0.290 Sum_probs=172.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCC--CCCCceeEEEcCCC-----------ce
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSN-----------MK 162 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~--~~p~~G~I~~~~~~-----------~~ 162 (554)
++|+++|+++.|+++.+|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.+ ..
T Consensus 6 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T CHL00131 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG 85 (252)
T ss_pred ceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence 469999999999888899999999999999999999999999999999998 58999999998742 14
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
++|++|++.+++..|+.+++...+..... ... . ..........++.++
T Consensus 86 ~~~~~q~~~~~~~~~~~~~l~~~~~~~~~-----------~~~-~--------------------~~~~~~~~~~~~~~~ 133 (252)
T CHL00131 86 IFLAFQYPIEIPGVSNADFLRLAYNSKRK-----------FQG-L--------------------PELDPLEFLEIINEK 133 (252)
T ss_pred EEEEeccccccccccHHHHHHHhhhhhhc-----------ccc-c--------------------ccccHHHHHHHHHHH
Confidence 78999999888888888886432110000 000 0 000011233456778
Q ss_pred hhhcCCCccccCCCCC-CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 008771 243 MPELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~-~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~ 318 (554)
++.+|+.....++.+. .|||||+|||+|||||+.+|++|||||||++||+.++.++.+.|++ .|.|||+||||+++
T Consensus 134 l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~ 213 (252)
T CHL00131 134 LKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL 213 (252)
T ss_pred HHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 8999996445677776 5999999999999999999999999999999999999999888753 48999999999999
Q ss_pred HHhh-cceEEEeeCCeeeeccCChh
Q 008771 319 LDQL-CTKIVETEMGVSRTYEGNYS 342 (554)
Q Consensus 319 l~~~-~d~i~~l~~g~~~~~~G~~~ 342 (554)
+..+ ||+|++|++|++. +.|+.+
T Consensus 214 ~~~~~~d~i~~l~~G~i~-~~~~~~ 237 (252)
T CHL00131 214 LDYIKPDYVHVMQNGKII-KTGDAE 237 (252)
T ss_pred HHhhhCCEEEEEeCCEEE-EecChh
Confidence 9876 8999999999874 556544
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=336.70 Aligned_cols=211 Identities=20% Similarity=0.291 Sum_probs=171.7
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~--------- 160 (554)
.++|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 23 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~ 102 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102 (272)
T ss_pred CcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence 356999999999988889999999999999999999999999999999999987 489999988742
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..++|++|++.+++. |+.+|+...... .. . ......+.
T Consensus 103 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~---------------~~-~----------------------~~~~~~~~ 143 (272)
T PRK14236 103 ELRRRVGMVFQRPNPFPK-SIYENVVYGLRL---------------QG-I----------------------NNRRVLDE 143 (272)
T ss_pred HHhccEEEEecCCccCcc-cHHHHHHHHHHh---------------cC-C----------------------CcHHHHHH
Confidence 258999999887765 999998532100 00 0 00001223
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
++.++++.+++.. ...++.+.+|||||+|||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|+|+|
T Consensus 144 ~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiiv 223 (272)
T PRK14236 144 AVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIV 223 (272)
T ss_pred HHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 4555666677642 245778899999999999999999999999999999999999999999888753 36899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|||++++.++||+|++|++|++. ..|+.+++.
T Consensus 224 tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 255 (272)
T PRK14236 224 THNMQQAARVSDYTAFMYMGKLV-EYGDTDTLF 255 (272)
T ss_pred eCCHHHHHhhCCEEEEEECCEEE-ecCCHHHHh
Confidence 99999999999999999999974 556666553
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=333.33 Aligned_cols=208 Identities=20% Similarity=0.300 Sum_probs=169.4
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCC------------
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN------------ 160 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~------------ 160 (554)
-+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 478999999998899999999999999999999999999999999999986 479999998743
Q ss_pred ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 161 ~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
..++|+||++.+++. |+.+|+..... .... .......+..+.
T Consensus 86 ~~i~~v~q~~~~~~~-tv~~ni~~~~~---------------~~~~----------------------~~~~~~~~~~~~ 127 (251)
T PRK14244 86 AKVGMVFQKPNPFPK-SIYDNVAYGPK---------------LHGL----------------------AKNKKKLDEIVE 127 (251)
T ss_pred hhEEEEecCcccccC-CHHHHHHHHHH---------------hcCC----------------------CCCHHHHHHHHH
Confidence 248999999887664 99998753210 0000 000011234566
Q ss_pred HHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecC
Q 008771 241 KLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD 315 (554)
Q Consensus 241 ~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd 315 (554)
++++.+|+.. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .+.|||+||||
T Consensus 128 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~ 207 (251)
T PRK14244 128 KSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHS 207 (251)
T ss_pred HHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 7788888853 235678899999999999999999999999999999999999999999888753 37899999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
++++.++||+|++|++|++. +.|+.+++
T Consensus 208 ~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 235 (251)
T PRK14244 208 MKQAKKVSDRVAFFQSGRIV-EYNTTQEI 235 (251)
T ss_pred HHHHHhhcCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999974 45655544
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-41 Score=333.49 Aligned_cols=210 Identities=22% Similarity=0.284 Sum_probs=169.8
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC--C---CceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--p---~~G~I~~~~~~--------- 160 (554)
.++|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+.+ | ++|+|.++|.+
T Consensus 4 ~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 4 EIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred cceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 356999999999998899999999999999999999999999999999999975 3 58999998743
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|++|++.+++ .||.+|+...... .. .......+.
T Consensus 84 ~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~---------------~~-----------------------~~~~~~~~~ 124 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFP-KSIYENVAYGPRI---------------HG-----------------------EKNKKTLDT 124 (253)
T ss_pred hhhceEEEEecCCccCc-ccHHHHHHhhHHh---------------cC-----------------------CCCHHHHHH
Confidence 24899999998766 4999998532100 00 000011233
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
.+.++++.+++.. ...++.+.+||||||||++|||||+.+|++|||||||++||+.+++++.+++++ .+.|||++
T Consensus 125 ~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~ 204 (253)
T PRK14261 125 IVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIV 204 (253)
T ss_pred HHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEE
Confidence 4555666666632 235788899999999999999999999999999999999999999999888753 36899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|||++++.++||+|++|++|++. ..|+.+++
T Consensus 205 sh~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 235 (253)
T PRK14261 205 THNMQQAARVSDYTGFMYLGKLI-EFDKTTQI 235 (253)
T ss_pred EcCHHHHHhhCCEEEEEECCEEE-EcCCHHHH
Confidence 99999999999999999999974 55665544
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=329.43 Aligned_cols=191 Identities=29% Similarity=0.490 Sum_probs=154.7
Q ss_pred EEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEE
Q 008771 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (554)
Q Consensus 98 i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~ 165 (554)
|+++|+++.|++ +.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 789999999975 579999999999999999999999999999999999999999999998743 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.+++ .|+.+|+....... ....+.++++.
T Consensus 83 ~~q~~~~~~-~tv~e~l~~~~~~~---------------------------------------------~~~~~~~~l~~ 116 (220)
T cd03245 83 VPQDVTLFY-GTLRDNITLGAPLA---------------------------------------------DDERILRAAEL 116 (220)
T ss_pred eCCCCcccc-chHHHHhhcCCCCC---------------------------------------------CHHHHHHHHHH
Confidence 999997765 69999875321000 00011112222
Q ss_pred cCCCc----------cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccC--CCeEEEEe
Q 008771 246 LGFTA----------DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIIS 313 (554)
Q Consensus 246 lgl~~----------~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--g~tvIiis 313 (554)
+++.. ......+.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++. +.|||+||
T Consensus 117 ~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~s 196 (220)
T cd03245 117 AGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIIT 196 (220)
T ss_pred cCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 22211 0123446799999999999999999999999999999999999999999988642 47999999
Q ss_pred cCHHHHHhhcceEEEeeCCeee
Q 008771 314 HDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~ 335 (554)
||++++ ++||+|++|++|++.
T Consensus 197 H~~~~~-~~~d~v~~l~~g~i~ 217 (220)
T cd03245 197 HRPSLL-DLVDRIIVMDSGRIV 217 (220)
T ss_pred CCHHHH-HhCCEEEEEeCCeEe
Confidence 999987 699999999999874
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=309.54 Aligned_cols=200 Identities=25% Similarity=0.354 Sum_probs=173.4
Q ss_pred ccEEEEeEEEEeCCee--eEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----eEEEEec
Q 008771 96 SGVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----KIAFLSQ 168 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~--~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-----~i~~v~Q 168 (554)
.++.+++++.+|++++ +|+|+|++|.+||.++++||||||||||+++++|+.+|+.|+|.++++.+ .-|.|||
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ 81 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQ 81 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEec
Confidence 3578899999998876 99999999999999999999999999999999999999999999987632 4699999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
+..+.|.+++.+|+..++.- ..++.......+.+++..+||
T Consensus 82 ~~~LlPWl~~~dNvafgL~l---------------------------------------~Gi~k~~R~~~a~q~l~~VgL 122 (259)
T COG4525 82 NEALLPWLNVIDNVAFGLQL---------------------------------------RGIEKAQRREIAHQMLALVGL 122 (259)
T ss_pred cCccchhhHHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHhCc
Confidence 99999999999998755320 112223344567888999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIiisHd~~~l~~~~d 324 (554)
.. ..++++.+|||||||||.|||||+.+|++|+||||+.+||.-+++.+.++| +..|+.+++||||++++.-+++
T Consensus 123 ~~-~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflat 201 (259)
T COG4525 123 EG-AEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLAT 201 (259)
T ss_pred cc-ccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhh
Confidence 74 458999999999999999999999999999999999999999988877765 5679999999999999999999
Q ss_pred eEEEeeC--Ceee
Q 008771 325 KIVETEM--GVSR 335 (554)
Q Consensus 325 ~i~~l~~--g~~~ 335 (554)
++++|.. |+++
T Consensus 202 rLvvlsp~pgRvv 214 (259)
T COG4525 202 RLVVLSPGPGRVV 214 (259)
T ss_pred eeEEecCCCceee
Confidence 9999975 5543
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=333.42 Aligned_cols=210 Identities=20% Similarity=0.260 Sum_probs=171.6
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC-----ceeEEEcCCC----------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN---------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-----~G~I~~~~~~---------- 160 (554)
+.|+++|++++|++..+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 6 ~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~ 85 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNR 85 (261)
T ss_pred ceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHH
Confidence 3599999999998888999999999999999999999999999999999999985 8999887633
Q ss_pred --ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 161 --~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
..++|++|++.+++ .|+.||+...... .. ........++
T Consensus 86 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~~---------------~~-----------------------~~~~~~~~~~ 126 (261)
T PRK14258 86 LRRQVSMVHPKPNLFP-MSVYDNVAYGVKI---------------VG-----------------------WRPKLEIDDI 126 (261)
T ss_pred hhccEEEEecCCccCc-ccHHHHHHHHHHh---------------cC-----------------------CCcHHHHHHH
Confidence 14999999988766 8999987532100 00 0000112334
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEE
Q 008771 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVI 311 (554)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIi 311 (554)
+.++++.+++.. ...++++.+|||||+||++|||+|+.+|++|||||||++||+.++..+.+.|++ .+.|||+
T Consensus 127 ~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiii 206 (261)
T PRK14258 127 VESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVI 206 (261)
T ss_pred HHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 566777777632 245788899999999999999999999999999999999999999999887753 4899999
Q ss_pred EecCHHHHHhhcceEEEeeC-----CeeeeccCChhHHH
Q 008771 312 ISHDRAFLDQLCTKIVETEM-----GVSRTYEGNYSQYV 345 (554)
Q Consensus 312 isHd~~~l~~~~d~i~~l~~-----g~~~~~~G~~~~~~ 345 (554)
||||++++.++||+|++|++ |++ .+.|...+..
T Consensus 207 vsH~~~~i~~~~d~i~~l~~~~~~~G~i-~~~~~~~~~~ 244 (261)
T PRK14258 207 VSHNLHQVSRLSDFTAFFKGNENRIGQL-VEFGLTKKIF 244 (261)
T ss_pred EECCHHHHHHhcCEEEEEccCCCcCceE-EEeCCHHHHH
Confidence 99999999999999999998 887 4557666543
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=376.61 Aligned_cols=256 Identities=23% Similarity=0.353 Sum_probs=187.4
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeC--CeeeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK--GVTVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~--~~~~l~~isl~i~~Ge~ 125 (554)
.+......+..++.+..+.+|+.+....+.+... .. ..+......|+++||+|+|+ ++++|+|+||+|++||+
T Consensus 407 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~--~~---~~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~ 481 (686)
T TIGR03797 407 AVTQLSNTLISILAVIPLWERAKPILEALPEVDE--AK---TDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEF 481 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc--Cc---CCCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCE
Confidence 3444455556677777778877665433322111 00 00111234599999999995 35799999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
+||+|+||||||||+|+|+|+++|++|+|.++|.+. .||||+|++.+ ++.|++||+..+-. ..
T Consensus 482 vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-f~gTI~eNi~~~~~--~~---- 554 (686)
T TIGR03797 482 VAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRL-MSGSIFENIAGGAP--LT---- 554 (686)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCcc-CcccHHHHHhcCCC--CC----
Confidence 999999999999999999999999999999998653 59999999988 56799999965310 00
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 275 (554)
.+++...+ +.. .+...+..+-. |++... ......||||||||++|||||+
T Consensus 555 ~e~i~~al------------------------~~a---~l~~~i~~lp~--G~dt~i-ge~G~~LSGGQrQRialARAll 604 (686)
T TIGR03797 555 LDEAWEAA------------------------RMA---GLAEDIRAMPM--GMHTVI-SEGGGTLSGGQRQRLLIARALV 604 (686)
T ss_pred HHHHHHHH------------------------HHc---CcHHHHHhccc--cccccc-cCCCCCCCHHHHHHHHHHHHHh
Confidence 00000000 000 11111222111 332221 2223689999999999999999
Q ss_pred cCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
.+|++||||||||+||+.+.+.+.+.|++.++|+|+|||+++.+.. ||+|++|++|++. ..|++++.+..
T Consensus 605 ~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~D~Iivl~~G~iv-~~G~~~~Ll~~ 674 (686)
T TIGR03797 605 RKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-ADRIYVLDAGRVV-QQGTYDELMAR 674 (686)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-CCEEEEEECCEEE-EECCHHHHHhC
Confidence 9999999999999999999999999998888999999999999975 9999999999984 67888876553
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=334.29 Aligned_cols=208 Identities=18% Similarity=0.276 Sum_probs=166.3
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCCc---------
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSNM--------- 161 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~~--------- 161 (554)
++|+++||+++|++.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 9 ~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred eEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 46999999999998899999999999999999999999999999999999976 4899999987432
Q ss_pred ---eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 162 ---~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
.|+|++|++.+++ .|+.+|+....... . . .....++
T Consensus 89 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---------------~------------------------~-~~~~~~~ 127 (264)
T PRK14243 89 VRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---------------G------------------------Y-KGDMDEL 127 (264)
T ss_pred HhhhEEEEccCCcccc-ccHHHHHHhhhhhc---------------C------------------------c-chHHHHH
Confidence 4999999987766 59999985421100 0 0 0001122
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+..+++.+++.. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||
T Consensus 128 ~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vt 207 (264)
T PRK14243 128 VERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVT 207 (264)
T ss_pred HHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 333444444421 234678899999999999999999999999999999999999999999988753 258999999
Q ss_pred cCHHHHHhhcceEEEee---------CCeeeeccCChhHHH
Q 008771 314 HDRAFLDQLCTKIVETE---------MGVSRTYEGNYSQYV 345 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~---------~g~~~~~~G~~~~~~ 345 (554)
||++++.++||+|++|+ +|++ ...|...++.
T Consensus 208 H~~~~~~~~~d~v~~l~~~~~~~~~~~g~i-~~~~~~~~~~ 247 (264)
T PRK14243 208 HNMQQAARVSDMTAFFNVELTEGGGRYGYL-VEFDRTEKIF 247 (264)
T ss_pred cCHHHHHHhCCEEEEEecccccccccCceE-EEeCCHHHHH
Confidence 99999999999999998 6876 4556655543
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=369.69 Aligned_cols=257 Identities=25% Similarity=0.335 Sum_probs=186.3
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEe-CCeeeEEceeEEEECCCEE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSY-KGVTVLKDVTWEVKKGEKV 126 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y-~~~~~l~~isl~i~~Ge~~ 126 (554)
.+......+...+.+..+.+|+.+..+.+..... ... ...+......|+++||+|.| +++++|+|+||+|++|+++
T Consensus 303 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~--~~~-~~~~~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~v 379 (588)
T PRK11174 303 PLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQ--QGE-KELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRI 379 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC--CCc-cccCCCCCceEEEEeeEEeccCCCeeeeeeEEEEcCCCEE
Confidence 4445555556678888888888776543321110 000 00000112359999999766 5678999999999999999
Q ss_pred EEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHH
Q 008771 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (554)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (554)
||||+||||||||+++|+|++ |++|+|.++|.+. .|+||+|++.+ ++.|++||+..+-.+ .. .
T Consensus 380 aIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~L-F~~TI~eNI~~g~~~-~~----~ 452 (588)
T PRK11174 380 ALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQL-PHGTLRDNVLLGNPD-AS----D 452 (588)
T ss_pred EEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcC-CCcCHHHHhhcCCCC-CC----H
Confidence 999999999999999999999 9999999998643 59999999988 567999999754110 00 0
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCccccCCCCCCCChhHHHHHHHHHHH
Q 008771 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKIL 274 (554)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL 274 (554)
+++.+.++ . ..+.+.+..+ |++... ...-..||||||||++|||||
T Consensus 453 eei~~al~------------------------~-------a~l~~~i~~lp~G~dT~v-ge~G~~LSGGQrQRialARAl 500 (588)
T PRK11174 453 EQLQQALE------------------------N-------AWVSEFLPLLPQGLDTPI-GDQAAGLSVGQAQRLALARAL 500 (588)
T ss_pred HHHHHHHH------------------------H-------hCHHHHHHhccccccccc-ccCCCCCCHHHHHHHHHHHHH
Confidence 00000000 0 0111222222 443222 222457999999999999999
Q ss_pred ccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHHH
Q 008771 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEK 348 (554)
Q Consensus 275 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~~ 348 (554)
+.+|++||||||||+||.++.+.+.+.|.+ .++|+|+|||+++.+.. ||+|++|++|++ ...|++++.+...
T Consensus 501 l~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~-aD~Iivl~~G~i-~e~G~~~eL~~~~ 574 (588)
T PRK11174 501 LQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ-WDQIWVMQDGQI-VQQGDYAELSQAG 574 (588)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh-CCEEEEEeCCeE-eecCCHHHHHhcc
Confidence 999999999999999999999999888764 47999999999999965 999999999987 4678888776543
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=329.24 Aligned_cols=210 Identities=26% Similarity=0.400 Sum_probs=163.9
Q ss_pred cEEEEeEEEEeCC-eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEE
Q 008771 97 GVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (554)
Q Consensus 97 ~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~ 165 (554)
.|+++|++++|++ +.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 3799999999975 579999999999999999999999999999999999999999999998743 24999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.++.. |+.+|+........ ...+... + + ...+..+++.
T Consensus 82 ~~q~~~~~~~-tv~~~~~~~~~~~~-----~~~~~~~--------------~----------~-------~~~l~~~~~~ 124 (229)
T cd03254 82 VLQDTFLFSG-TIMENIRLGRPNAT-----DEEVIEA--------------A----------K-------EAGAHDFIMK 124 (229)
T ss_pred ecCCchhhhh-HHHHHHhccCCCCC-----HHHHHHH--------------H----------H-------HhChHHHHHh
Confidence 9999877554 99998753211000 0000000 0 0 0011222333
Q ss_pred c--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 008771 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~ 321 (554)
+ |+.. ..++.+.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||+|||+++++..
T Consensus 125 ~~~~~~~-~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (229)
T cd03254 125 LPNGYDT-VLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN 203 (229)
T ss_pred CcccccC-HhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 3 4432 34667899999999999999999999999999999999999999999888754 47899999999999964
Q ss_pred hcceEEEeeCCeeeeccCChhHHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||+|++|++|++. +.|+++++..
T Consensus 204 -~d~i~~l~~g~~~-~~~~~~~~~~ 226 (229)
T cd03254 204 -ADKILVLDDGKII-EEGTHDELLA 226 (229)
T ss_pred -CCEEEEEeCCeEE-EeCCHHHHHh
Confidence 9999999999974 5677666543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=334.77 Aligned_cols=209 Identities=19% Similarity=0.259 Sum_probs=167.3
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~--------- 160 (554)
+++|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 18 ~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 18 HSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred CceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 3579999999999988899999999999999999999999999999999999863 69999998743
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|+||++.+++ .|+.+|+....... . . ....+.
T Consensus 98 ~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~---------------~------------------------~-~~~~~~ 136 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFP-KSIYENIAFAPRAN---------------G------------------------Y-KGNLDE 136 (274)
T ss_pred HHhhcEEEEccCCcccc-ccHHHHHHhHHHhc---------------C------------------------c-hHHHHH
Confidence 25999999988765 49999885321000 0 0 000112
Q ss_pred HHHHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
.+.++++.+++. .+..++++.+|||||+|||+|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+|
T Consensus 137 ~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~ 216 (274)
T PRK14265 137 LVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMV 216 (274)
T ss_pred HHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 233344444442 1245678899999999999999999999999999999999999999999998864 36899999
Q ss_pred ecCHHHHHhhcceEEEee---------CCeeeeccCChhHHH
Q 008771 313 SHDRAFLDQLCTKIVETE---------MGVSRTYEGNYSQYV 345 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~---------~g~~~~~~G~~~~~~ 345 (554)
|||++++.++||++++|+ +|++ +..|+..++.
T Consensus 217 sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~-~~~g~~~~~~ 257 (274)
T PRK14265 217 THNMQQASRVADWTAFFNTEIDEYGKRRGKL-VEFSPTEQMF 257 (274)
T ss_pred eCCHHHHHHhCCEEEEEecccccccccCceE-EEeCCHHHHH
Confidence 999999999999999997 7887 4557665543
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=378.72 Aligned_cols=261 Identities=20% Similarity=0.326 Sum_probs=185.4
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhc--cccCCCCC-CCCCccEEEEeEEEEeCC--eeeEEceeEEEEC
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYS--NKQSNTGA-SSISSGVKLENISKSYKG--VTVLKDVTWEVKK 122 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~ 122 (554)
.+......+..++.+..+++|+.+....+.+..... .......+ ......|+++||+|+|++ +++|+|+||+|++
T Consensus 425 p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~ 504 (710)
T TIGR03796 425 PVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQP 504 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcC
Confidence 334444444556666777776655443322111100 00000000 122346999999999974 5799999999999
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHH
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEI 192 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~ 192 (554)
||++||+|+||||||||+++|+|+++|++|+|.++|.+. .|+||||++.+ ++.|++||+...-.+ ..
T Consensus 505 Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-f~gTi~eNi~l~~~~-~~- 581 (710)
T TIGR03796 505 GQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFL-FEGTVRDNLTLWDPT-IP- 581 (710)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChh-hhccHHHHhhCCCCC-CC-
Confidence 999999999999999999999999999999999998653 59999999987 467999999642100 00
Q ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHH
Q 008771 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272 (554)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAr 272 (554)
.+.+.+.+ +.. .+.+.+.++- .|++... ......||||||||++|||
T Consensus 582 ---~~~i~~al------------------------~~~---~l~~~i~~lp--~gl~t~i-~e~G~~LSGGQrQRiaLAR 628 (710)
T TIGR03796 582 ---DADLVRAC------------------------KDA---AIHDVITSRP--GGYDAEL-AEGGANLSGGQRQRLEIAR 628 (710)
T ss_pred ---HHHHHHHH------------------------HHh---CCHHHHHhCc--Cccccee-ccCCCCCCHHHHHHHHHHH
Confidence 00000000 000 0111111111 1333222 2234689999999999999
Q ss_pred HHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 273 ILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 273 aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||+.+|++||||||||+||+.+.+.+.+.|++.++|+|+|||+++.+.. ||+|++|++|+++ ..|++++.++
T Consensus 629 all~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~-~~G~~~~Ll~ 700 (710)
T TIGR03796 629 ALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD-CDEIIVLERGKVV-QRGTHEELWA 700 (710)
T ss_pred HHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEeCCEEE-EecCHHHHHH
Confidence 9999999999999999999999999999998889999999999999975 9999999999974 6688887654
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=336.54 Aligned_cols=210 Identities=22% Similarity=0.358 Sum_probs=168.1
Q ss_pred cEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------ceEEEEec
Q 008771 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------~~i~~v~Q 168 (554)
.|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+||
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 489999999995 5789999999999999999999999999999999999999999999998853 25999999
Q ss_pred ccccc--cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 169 EFEVS--MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 169 ~~~~~--~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
++.+. +..++.+++........ . .. .......+.++.++++.+
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~--------------~------~~---------------~~~~~~~~~~~~~~l~~~ 130 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHM--------------G------WL---------------RRAKKRDRQIVTAALARV 130 (272)
T ss_pred ccccccCCCcchhhheeccccccc--------------c------cc---------------cCCCHHHHHHHHHHHHHc
Confidence 98653 23356666532100000 0 00 000011234567788889
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhc
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~ 323 (554)
|+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.+++++.++|++ .|.|||+||||++++..+|
T Consensus 131 gl~-~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~ 209 (272)
T PRK15056 131 DMV-EFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFC 209 (272)
T ss_pred CCh-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 986 456889999999999999999999999999999999999999999999988753 4889999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|+++++ +|++. +.|+.++.
T Consensus 210 d~v~~~-~G~i~-~~g~~~~~ 228 (272)
T PRK15056 210 DYTVMV-KGTVL-ASGPTETT 228 (272)
T ss_pred CEEEEE-CCEEE-eecCHHhc
Confidence 999877 78864 55665543
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=314.08 Aligned_cols=160 Identities=36% Similarity=0.579 Sum_probs=145.9
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEEec
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v~Q 168 (554)
|+++|++++|++.++|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPE 80 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEec
Confidence 478999999988889999999999999999999999999999999999999999999998743 25899999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++..|+.+|+
T Consensus 81 ~~~~~~~~tv~~~~------------------------------------------------------------------ 94 (173)
T cd03230 81 EPSLYENLTVRENL------------------------------------------------------------------ 94 (173)
T ss_pred CCccccCCcHHHHh------------------------------------------------------------------
Confidence 98887777876552
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcce
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~ 325 (554)
.|||||+||++|||||+.+|++|||||||++||+.++.++.+.|++ .|.|+|++|||++++..+||+
T Consensus 95 ----------~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~ 164 (173)
T cd03230 95 ----------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDR 164 (173)
T ss_pred ----------hcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCE
Confidence 0999999999999999999999999999999999999999888753 478999999999999999999
Q ss_pred EEEeeCCe
Q 008771 326 IVETEMGV 333 (554)
Q Consensus 326 i~~l~~g~ 333 (554)
|++|++|+
T Consensus 165 i~~l~~g~ 172 (173)
T cd03230 165 VAILNNGR 172 (173)
T ss_pred EEEEeCCC
Confidence 99999885
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=365.24 Aligned_cols=209 Identities=31% Similarity=0.446 Sum_probs=174.9
Q ss_pred CccEEEEeEEEEeC-----CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEc-CC---------
Q 008771 95 SSGVKLENISKSYK-----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA-KS--------- 159 (554)
Q Consensus 95 ~~~i~~~~ls~~y~-----~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~-~~--------- 159 (554)
.++|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |.
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence 45799999999994 2579999999999999999999999999999999999999999999984 31
Q ss_pred -------CceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCc
Q 008771 160 -------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (554)
Q Consensus 160 -------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (554)
..+|+|+||++.+++..||.+|+...+. + ....
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~---------------~-------------------------~~~~ 396 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIG---------------L-------------------------ELPD 396 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHH---------------c-------------------------CCCH
Confidence 1249999999888888999999853210 0 0000
Q ss_pred ccHHHHHHHHhhhcCCCc----cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----c
Q 008771 233 DTLDAKVSKLMPELGFTA----DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (554)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~----~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~ 304 (554)
...+.++.++++.+||.. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+ +
T Consensus 397 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~ 476 (520)
T TIGR03269 397 ELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREE 476 (520)
T ss_pred HHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 112345778889999964 24689999999999999999999999999999999999999999999988874 3
Q ss_pred CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 305 ~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
.|.|||+||||++++.++||+|++|++|++. +.|..++.
T Consensus 477 ~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 515 (520)
T TIGR03269 477 MEQTFIIVSHDMDFVLDVCDRAALMRDGKIV-KIGDPEEI 515 (520)
T ss_pred cCcEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 5899999999999999999999999999874 55665443
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=329.20 Aligned_cols=208 Identities=26% Similarity=0.417 Sum_probs=164.9
Q ss_pred EEEEeEEEEeCCe--eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEE
Q 008771 98 VKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (554)
Q Consensus 98 i~~~~ls~~y~~~--~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~ 165 (554)
|+++|++++|++. ++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999765 79999999999999999999999999999999999999999999998743 24999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.++. .|+.||+....... ....+. ... ....+.++++.
T Consensus 81 ~~q~~~~~~-~tv~enl~~~~~~~-------------------~~~~~~----------~~~-------~~~~~~~~~~~ 123 (234)
T cd03251 81 VSQDVFLFN-DTVAENIAYGRPGA-------------------TREEVE----------EAA-------RAANAHEFIME 123 (234)
T ss_pred eCCCCeecc-ccHHHHhhccCCCC-------------------CHHHHH----------HHH-------HHcCcHHHHHh
Confidence 999987764 69999985421100 000000 000 00012333444
Q ss_pred c--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 008771 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~ 321 (554)
+ |+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|++ .+.|||++|||++++..
T Consensus 124 l~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 202 (234)
T cd03251 124 LPEGYD-TVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN 202 (234)
T ss_pred cccCcc-eeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 4 454 345677899999999999999999999999999999999999999999988754 48899999999999976
Q ss_pred hcceEEEeeCCeeeeccCChhHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
||+|++|++|++. ..|+..++.
T Consensus 203 -~d~v~~l~~G~i~-~~~~~~~~~ 224 (234)
T cd03251 203 -ADRIVVLEDGKIV-ERGTHEELL 224 (234)
T ss_pred -CCEEEEecCCeEe-eeCCHHHHH
Confidence 9999999999874 566665543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=328.94 Aligned_cols=209 Identities=25% Similarity=0.419 Sum_probs=163.9
Q ss_pred EEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEE
Q 008771 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (554)
Q Consensus 98 i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~ 165 (554)
|+++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999963 579999999999999999999999999999999999999999999998853 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
+||++.++ ..||.+|+...... .. ...+. ...+ ...+.+++..
T Consensus 81 ~~q~~~~~-~~tv~~nl~~~~~~-~~----~~~~~------------------------~~~~-------~~~~~~~l~~ 123 (237)
T cd03252 81 VLQENVLF-NRSIRDNIALADPG-MS----MERVI------------------------EAAK-------LAGAHDFISE 123 (237)
T ss_pred EcCCchhc-cchHHHHhhccCCC-CC----HHHHH------------------------HHHH-------HcCcHHHHHh
Confidence 99998765 56999998532100 00 00000 0000 0012233444
Q ss_pred c--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 008771 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~ 321 (554)
+ ++. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|||++|||++++.
T Consensus 124 l~~~~~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~- 201 (237)
T cd03252 124 LPEGYD-TIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK- 201 (237)
T ss_pred Cccccc-chhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-
Confidence 4 443 234678899999999999999999999999999999999999999999888753 3789999999999996
Q ss_pred hcceEEEeeCCeeeeccCChhHHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
.||+|++|++|++. +.|+..++..
T Consensus 202 ~~d~v~~l~~G~i~-~~~~~~~~~~ 225 (237)
T cd03252 202 NADRIIVMEKGRIV-EQGSHDELLA 225 (237)
T ss_pred hCCEEEEEECCEEE-EEcCHHHHHh
Confidence 59999999999874 5576665443
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=322.57 Aligned_cols=189 Identities=21% Similarity=0.311 Sum_probs=162.6
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-------eEEEEecc
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------KIAFLSQE 169 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-------~i~~v~Q~ 169 (554)
+|+++|+++.|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCC
Confidence 58999999999988899999999999999999999999999999999999999999999987542 48999998
Q ss_pred cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
+.+++..|+.+|+..... ... ..+.++.++++.+|+.
T Consensus 82 ~~~~~~~tv~~~l~~~~~-----------------------------------------~~~--~~~~~~~~~l~~~~l~ 118 (207)
T PRK13539 82 NAMKPALTVAENLEFWAA-----------------------------------------FLG--GEELDIAAALEAVGLA 118 (207)
T ss_pred CcCCCCCcHHHHHHHHHH-----------------------------------------hcC--CcHHHHHHHHHHcCCH
Confidence 877778899998742100 000 0123467788889986
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceE
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i 326 (554)
. ..++++.+|||||+||++|||||+.+|++|||||||++||+.+++++.+.|++ .|.|+|+||||++++.. |++
T Consensus 119 ~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~ 195 (207)
T PRK13539 119 P-LAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARE 195 (207)
T ss_pred H-HHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcE
Confidence 4 56888999999999999999999999999999999999999999999888753 48999999999999986 999
Q ss_pred EEeeC
Q 008771 327 VETEM 331 (554)
Q Consensus 327 ~~l~~ 331 (554)
+.++.
T Consensus 196 ~~~~~ 200 (207)
T PRK13539 196 LDLGP 200 (207)
T ss_pred EeecC
Confidence 88754
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=342.70 Aligned_cols=244 Identities=23% Similarity=0.362 Sum_probs=180.5
Q ss_pred HHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCCee-eEEceeEEEECCCEEEEECCCCcc
Q 008771 57 KSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAG 135 (554)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~~~-~l~~isl~i~~Ge~~~lvG~NGsG 135 (554)
..+.++..++..++.....+...+.. ..+.......|+++||+++|++++ +|+++||+|++||++||||+||||
T Consensus 316 r~~~q~l~Dm~~~~~l~~~~~~i~~~-----~~~i~~~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsG 390 (591)
T KOG0057|consen 316 RELRQALTDMRTLFILLEVDEDIQEA-----ALPIELFGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSG 390 (591)
T ss_pred HHHHHHHHhHHHHHhhhhhhhhhhhc-----cCCcccCCCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCC
Confidence 44666666777666654333222211 111123345599999999998765 999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Q 008771 136 KTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205 (554)
Q Consensus 136 KSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (554)
|||++|+|.+++. ++|+|.++|.++ .|||||||..+ |+.||..|+..+-..
T Consensus 391 KSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~L-FndTIl~NI~YGn~s----------------- 451 (591)
T KOG0057|consen 391 KSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVL-FNDTILYNIKYGNPS----------------- 451 (591)
T ss_pred HHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccc-cchhHHHHhhcCCCC-----------------
Confidence 9999999999999 999999999764 49999999887 667999999754210
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEee
Q 008771 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLL 283 (554)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlL 283 (554)
..+++....+...+. .+....+ |..... ......|||||||||+||||++.+|+|++|
T Consensus 452 ------------as~eeV~e~~k~a~~-------hd~i~~l~~GY~T~V-GerG~~LSGGekQrvslaRa~lKda~Il~~ 511 (591)
T KOG0057|consen 452 ------------ASDEEVVEACKRAGL-------HDVISRLPDGYQTLV-GERGLMLSGGEKQRVSLARAFLKDAPILLL 511 (591)
T ss_pred ------------cCHHHHHHHHHHcCc-------HHHHHhccccchhhH-hhcccccccchHHHHHHHHHHhcCCCeEEe
Confidence 001111111111111 1111122 211111 112247999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 284 DEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 284 DEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
|||||+||.++...+.+.+.+ .++|+|+|-||++.+.. ||+|+++++|++..+ |+.++.+.
T Consensus 512 DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~-gth~ell~ 574 (591)
T KOG0057|consen 512 DEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEY-GTHSELLA 574 (591)
T ss_pred cCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CCEEEEEECCeeEEe-ccHHHHhh
Confidence 999999999999999998865 58999999999999976 999999999998655 77777666
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=367.41 Aligned_cols=255 Identities=20% Similarity=0.277 Sum_probs=186.3
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC-eeeEEceeEEEECCCEE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKV 126 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~ 126 (554)
.+......+..++.+..+.+++.+..+.+...... .. .......|+++|++|+|++ .++|+|+||+|++||++
T Consensus 297 pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~--~~----~~~~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~i 370 (592)
T PRK10790 297 PLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN--DD----RPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFV 370 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC--Cc----cCCCCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEE
Confidence 34444455566777788888877765433211100 00 0112245999999999964 57999999999999999
Q ss_pred EEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHH
Q 008771 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (554)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (554)
||+|+||||||||+++|+|+++|++|+|.++|.+. .|+||||++.++. .|+++|+...- + .. .
T Consensus 371 aIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~-~Ti~~NI~~~~-~-~~----d 443 (592)
T PRK10790 371 ALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLA-DTFLANVTLGR-D-IS----E 443 (592)
T ss_pred EEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCcccc-chHHHHHHhCC-C-CC----H
Confidence 99999999999999999999999999999998643 5999999998854 59999996431 0 00 0
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHcc
Q 008771 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (554)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 276 (554)
+++.. .++.. .+.+.+.++-+ |++... ......||||||||++|||||+.
T Consensus 444 ~~i~~------------------------a~~~~---gl~~~i~~lp~--Gldt~i-~e~g~~LSGGqrQRialARaLl~ 493 (592)
T PRK10790 444 EQVWQ------------------------ALETV---QLAELARSLPD--GLYTPL-GEQGNNLSVGQKQLLALARVLVQ 493 (592)
T ss_pred HHHHH------------------------HHHHc---CcHHHHHhccc--cccccc-cCCCCCCCHHHHHHHHHHHHHHh
Confidence 00000 00000 11112222111 333222 22346899999999999999999
Q ss_pred CCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 277 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
+|++|||||||++||+++.+.+.+.|++ .++|+|+|||+++.+.. ||+|++|++|++. ..|++++.++.
T Consensus 494 ~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~-~D~ii~l~~G~i~-~~G~~~~L~~~ 564 (592)
T PRK10790 494 TPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVE-ADTILVLHRGQAV-EQGTHQQLLAA 564 (592)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh-CCEEEEEECCEEE-EEcCHHHHHhC
Confidence 9999999999999999999999888864 47999999999999875 9999999999984 67888877654
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=328.43 Aligned_cols=185 Identities=29% Similarity=0.409 Sum_probs=156.6
Q ss_pred EEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----eEEEEecccccccCccHHHHHHHhhH
Q 008771 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----KIAFLSQEFEVSMSRTVREEFMSAFK 187 (554)
Q Consensus 113 l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-----~i~~v~Q~~~~~~~~tv~e~~~~~~~ 187 (554)
|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. ..+|++|++.+++..||.+|+...+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999987532 35899999988888899999853210
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHH
Q 008771 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267 (554)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqR 267 (554)
.. . ..........++.++++.+|+. ...++++.+||||||||
T Consensus 81 ~~-------------~------------------------~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qr 122 (230)
T TIGR01184 81 RV-------------L------------------------PDLSKSERRAIVEEHIALVGLT-EAADKRPGQLSGGMKQR 122 (230)
T ss_pred hc-------------c------------------------cCCCHHHHHHHHHHHHHHcCCH-HHHcCChhhCCHHHHHH
Confidence 00 0 0001112234567888999996 56688899999999999
Q ss_pred HHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceEEEeeCCeee
Q 008771 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 268 v~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~ 335 (554)
|+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||++++.++||+|++|++|++.
T Consensus 123 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~ 194 (230)
T TIGR01184 123 VAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAA 194 (230)
T ss_pred HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEe
Confidence 9999999999999999999999999999999887753 4889999999999999999999999999875
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=320.28 Aligned_cols=185 Identities=21% Similarity=0.331 Sum_probs=159.5
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------eEEEEe
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLS 167 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------~i~~v~ 167 (554)
+|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 37899999999988999999999999999999999999999999999999999999999988542 599999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
|++.+++..||.+|+..... .. ..+.++.++++.++
T Consensus 81 q~~~~~~~~tv~~~~~~~~~------------------------------------------~~--~~~~~~~~~l~~~~ 116 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIH------------------------------------------FS--PGAVGITELCRLFS 116 (200)
T ss_pred cccccCcCCCHHHHHHHHHh------------------------------------------cC--cchHHHHHHHHHcC
Confidence 99888788999998753210 00 01234667788888
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcc
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d 324 (554)
+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.+++++.+.|++ .+.|+|+|||+..++.. ||
T Consensus 117 l~-~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d 194 (200)
T PRK13540 117 LE-HLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-AD 194 (200)
T ss_pred Cc-hhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cc
Confidence 86 355788899999999999999999999999999999999999999999988763 58899999999999976 88
Q ss_pred eEE
Q 008771 325 KIV 327 (554)
Q Consensus 325 ~i~ 327 (554)
.-+
T Consensus 195 ~~~ 197 (200)
T PRK13540 195 YEE 197 (200)
T ss_pred hhh
Confidence 654
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=330.30 Aligned_cols=210 Identities=22% Similarity=0.335 Sum_probs=168.2
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~--------- 160 (554)
...|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 14 ~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~ 93 (265)
T PRK14252 14 QQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD 93 (265)
T ss_pred CceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC
Confidence 3569999999999988999999999999999999999999999999999999875 79999997632
Q ss_pred -----ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccH
Q 008771 161 -----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (554)
Q Consensus 161 -----~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (554)
..|+|++|++.+++. |+.+|+....... . .. .....
T Consensus 94 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---------------~-~~----------------------~~~~~ 134 (265)
T PRK14252 94 PIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---------------G-VK----------------------RRSIL 134 (265)
T ss_pred HHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---------------C-CC----------------------hHHHH
Confidence 248999999888765 9999985321100 0 00 00011
Q ss_pred HHHHHHHhhhcCCC---ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEE
Q 008771 236 DAKVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMV 310 (554)
Q Consensus 236 ~~~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvI 310 (554)
++++..+++.+++. ....++.+.+|||||+|||+|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||
T Consensus 135 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tii 214 (265)
T PRK14252 135 EERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTIL 214 (265)
T ss_pred HHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEE
Confidence 23344455555542 1234677899999999999999999999999999999999999999999888753 368999
Q ss_pred EEecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+||||++++.++||+|++|++|++.. .|+..++
T Consensus 215 ivth~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 247 (265)
T PRK14252 215 IVTHNMQQAARVSDYTAYMYMGELIE-FGATDTI 247 (265)
T ss_pred EEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999999854 4555443
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=314.20 Aligned_cols=162 Identities=39% Similarity=0.585 Sum_probs=146.1
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------------ceEEE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIAF 165 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------~~i~~ 165 (554)
|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM 80 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEE
Confidence 478999999988889999999999999999999999999999999999999999999987732 25899
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.+++..|+.+|+.
T Consensus 81 ~~q~~~~~~~~t~~~~l~-------------------------------------------------------------- 98 (178)
T cd03229 81 VFQDFALFPHLTVLENIA-------------------------------------------------------------- 98 (178)
T ss_pred EecCCccCCCCCHHHhee--------------------------------------------------------------
Confidence 999988777778877641
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---C-CCeEEEEecCHHHHHh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~-g~tvIiisHd~~~l~~ 321 (554)
+ .|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ . +.|+|+||||++++..
T Consensus 99 --~----------~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 99 --L----------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred --e----------cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 0 0999999999999999999999999999999999999999888753 3 7899999999999999
Q ss_pred hcceEEEeeCCe
Q 008771 322 LCTKIVETEMGV 333 (554)
Q Consensus 322 ~~d~i~~l~~g~ 333 (554)
+||+|++|++|+
T Consensus 167 ~~d~i~~l~~g~ 178 (178)
T cd03229 167 LADRVVVLRDGK 178 (178)
T ss_pred hcCEEEEEeCCC
Confidence 999999998873
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=327.71 Aligned_cols=208 Identities=19% Similarity=0.325 Sum_probs=170.1
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCC-----------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN----------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~----------- 160 (554)
+|+++||++.|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+.. |++|+|.++|.+
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 4899999999998889999999999999999999999999999999999864 489999998743
Q ss_pred -ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 161 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
..++|+||++.+++ .|+.+|+...+... . .......++++
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~nl~~~~~~~---------------~-----------------------~~~~~~~~~~~ 123 (250)
T PRK14266 83 RKKVGMVFQKPNPFP-KSIFDNVAYGLRIH---------------G-----------------------EDDEDFIEERV 123 (250)
T ss_pred hhheEEEecCCccCc-chHHHHHHhHHhhc---------------C-----------------------CCCHHHHHHHH
Confidence 24999999988766 49999885321100 0 00001123455
Q ss_pred HHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 008771 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (554)
Q Consensus 240 ~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisH 314 (554)
.++++.+|+.. ...++++..|||||+||++|||||+.+|++|||||||++||+.++..+.+.|++ .+.|||+|||
T Consensus 124 ~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh 203 (250)
T PRK14266 124 EESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTH 203 (250)
T ss_pred HHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 66666666632 234778899999999999999999999999999999999999999999888753 4789999999
Q ss_pred CHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|++++..+||+|++|++|++. +.|+.+++
T Consensus 204 ~~~~~~~~~~~i~~l~~G~i~-~~g~~~~~ 232 (250)
T PRK14266 204 NMQQATRVSKYTSFFLNGEII-ESGLTDQI 232 (250)
T ss_pred CHHHHHhhcCEEEEEECCeEE-EeCCHHHH
Confidence 999999999999999999874 56776654
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=325.76 Aligned_cols=196 Identities=29% Similarity=0.388 Sum_probs=162.3
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCcc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~t 177 (554)
+.++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|... .+..+...+++..|
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~--~~~~~~~~~~~~~t 100 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVS--SLLGLGGGFNPELT 100 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc--hhhcccccCCCCCc
Confidence 7899999999999999999999999999999999999999999999999999999999987532 22223344556789
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCC
Q 008771 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (554)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~ 257 (554)
|.+|+...... . .........++.++++.+|+. ...++++
T Consensus 101 v~enl~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~-~~~~~~~ 140 (224)
T cd03220 101 GRENIYLNGRL---------------L------------------------GLSRKEIDEKIDEIIEFSELG-DFIDLPV 140 (224)
T ss_pred HHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCCh-hhhhCCh
Confidence 99987532100 0 000112234566778888885 4568889
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceEEEeeCCee
Q 008771 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (554)
Q Consensus 258 ~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i~~l~~g~~ 334 (554)
.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++ .+.|||+||||++++..+||+|++|++|++
T Consensus 141 ~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 220 (224)
T cd03220 141 KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKI 220 (224)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999888887643 478999999999999999999999999987
Q ss_pred e
Q 008771 335 R 335 (554)
Q Consensus 335 ~ 335 (554)
.
T Consensus 221 ~ 221 (224)
T cd03220 221 R 221 (224)
T ss_pred E
Confidence 4
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=336.06 Aligned_cols=224 Identities=20% Similarity=0.309 Sum_probs=174.2
Q ss_pred CCCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCC-------
Q 008771 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN------- 160 (554)
Q Consensus 93 ~~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~------- 160 (554)
..+.+|.++||+++|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 41 ~~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 41 DGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CCCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 44567999999999998899999999999999999999999999999999999986 689999998742
Q ss_pred -----ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCC-ccc
Q 008771 161 -----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN-LDT 234 (554)
Q Consensus 161 -----~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 234 (554)
..|+|++|++.+++ .||.+|+...+..... ... ......+ ... ...
T Consensus 121 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~-----------~~~-----~~~~~~~-----------~~~~~~~ 172 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGD-----------INT-----GLLARLL-----------GRDDKDA 172 (305)
T ss_pred HHHHhhceEEEccCCcccc-ccHHHHHHhHHhhccc-----------ccc-----ccccccc-----------ccCchHH
Confidence 25999999987765 5999998643210000 000 0000000 000 011
Q ss_pred HHHHHHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccC--CCeE
Q 008771 235 LDAKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPM 309 (554)
Q Consensus 235 ~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--g~tv 309 (554)
..+.+.++++.+++.. ...++++.+|||||+|||+|||||+.+|+||||||||++||+.++..|.++|++. +.||
T Consensus 173 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~ti 252 (305)
T PRK14264 173 EDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTV 252 (305)
T ss_pred HHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEE
Confidence 2345677788887742 3457788999999999999999999999999999999999999999998887642 5899
Q ss_pred EEEecCHHHHHhhcceE-EEeeCCeeeeccCChhHHH
Q 008771 310 VIISHDRAFLDQLCTKI-VETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 310 IiisHd~~~l~~~~d~i-~~l~~g~~~~~~G~~~~~~ 345 (554)
|+||||++++..+||+| ++|++|++. ..|+.+++.
T Consensus 253 iivtH~~~~i~~~~d~i~~~l~~G~i~-~~g~~~~~~ 288 (305)
T PRK14264 253 VVVTHNMQQAARISDQTAVFLTGGELV-EYDDTDKIF 288 (305)
T ss_pred EEEEcCHHHHHHhcCEEEEEecCCEEE-EeCCHHHHH
Confidence 99999999999999997 567999874 456665543
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=347.24 Aligned_cols=241 Identities=24% Similarity=0.369 Sum_probs=181.1
Q ss_pred HHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCCe--eeEEceeEEEECCCEEEEECCCCc
Q 008771 57 KSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGA 134 (554)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~~--~~l~~isl~i~~Ge~~~lvG~NGs 134 (554)
..+.....++.|+-+.+..+++.... +. ..+... ..++++||+|+|++. ++|+|+||++++||++||+|++||
T Consensus 301 ~~lgq~~~Sa~Rl~~i~~q~~e~~~~-~~---~~~~~~-~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGs 375 (573)
T COG4987 301 QHLGQVIASARRLNDILDQKPEVTFP-DE---QTATTG-QALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGS 375 (573)
T ss_pred HHhhHHHHHHHHHhhhccCCcccCCC-cc---ccCCcc-ceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCC
Confidence 45566666777777766665433221 11 111111 269999999999765 599999999999999999999999
Q ss_pred cHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHH--HHHHHHHHHHHHHH
Q 008771 135 GKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKE--EMEIAGKLERVQKA 202 (554)
Q Consensus 135 GKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~--~~~~~~~~~~~~~~ 202 (554)
|||||+++|+|.++|++|+|.++|.+. .|++++|.+.+ |+.|+++|+..+-.+ ..++...++
T Consensus 376 GKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hl-F~~Tlr~NL~lA~~~AsDEel~~aL~----- 449 (573)
T COG4987 376 GKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHL-FSGTLRDNLRLANPDASDEELWAALQ----- 449 (573)
T ss_pred CHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHH-HHHHHHHHHhhcCCCCCHHHHHHHHH-----
Confidence 999999999999999999999998542 58999999988 667999998754211 001111111
Q ss_pred HhhccCcHHHHHHHHHHHHHHHHHHHhCCccc----HHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCC
Q 008771 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT----LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278 (554)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p 278 (554)
.++..+ .++..+..+. ..-..|||||+||++|||+|+++.
T Consensus 450 --------------------------qvgL~~l~~~~p~gl~t~lg----------e~G~~LSGGE~rRLAlAR~LL~da 493 (573)
T COG4987 450 --------------------------QVGLEKLLESAPDGLNTWLG----------EGGRRLSGGERRRLALARALLHDA 493 (573)
T ss_pred --------------------------HcCHHHHHHhChhhhhchhc----------cCCCcCCchHHHHHHHHHHHHcCC
Confidence 011000 1111222222 223689999999999999999999
Q ss_pred CeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 279 DLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 279 ~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+++||||||.|||+.+.+.+.+.+.+ .|+|+|+|||++..++. ||+|++|++|++ +..|+|.+.+.
T Consensus 494 pl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~-~drIivl~~Gki-ie~G~~~~Ll~ 561 (573)
T COG4987 494 PLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER-MDRIIVLDNGKI-IEEGTHAELLA 561 (573)
T ss_pred CeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh-cCEEEEEECCee-eecCCHHhhhc
Confidence 99999999999999999999988754 58999999999999975 999999999997 56788887766
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=308.62 Aligned_cols=163 Identities=26% Similarity=0.443 Sum_probs=146.5
Q ss_pred EEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCc
Q 008771 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (554)
Q Consensus 98 i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~ 176 (554)
|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..++|++|++.+ +..
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-~~i~~~~q~~~~-~~~ 78 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-EDLLFLPQRPYL-PLG 78 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-ceEEEECCCCcc-ccc
Confidence 47899999996 467999999999999999999999999999999999999999999999864 579999999875 456
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCC
Q 008771 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (554)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (554)
|+.+|+.. + .
T Consensus 79 tv~~nl~~--------------------------------------------------------------~--------~ 88 (166)
T cd03223 79 TLREQLIY--------------------------------------------------------------P--------W 88 (166)
T ss_pred cHHHHhhc--------------------------------------------------------------c--------C
Confidence 88887520 0 2
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 257 ~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
+.+||||||||++|||||+.+|++|||||||++||+.+++++.+.+++.+.|+|++|||++++ .+||+|++|+++.
T Consensus 89 ~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 89 DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLW-KFHDRVLDLDGEG 164 (166)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence 468999999999999999999999999999999999999999999988889999999999876 5899999998763
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=325.09 Aligned_cols=200 Identities=23% Similarity=0.428 Sum_probs=161.3
Q ss_pred CccEEEEeEEEEeCC---eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------c
Q 008771 95 SSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------M 161 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~ 161 (554)
.++|+++|++++|++ .++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 356999999999974 369999999999999999999999999999999999999999999998853 2
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
.|+|++|++.+++ .||.+|+....... .. .+ +... .....+.+
T Consensus 89 ~i~~~~q~~~l~~-~tv~~nl~~~~~~~-------------------~~-------~~---~~~~-------~~~~~~~~ 131 (226)
T cd03248 89 KVSLVGQEPVLFA-RSLQDNIAYGLQSC-------------------SF-------EC---VKEA-------AQKAHAHS 131 (226)
T ss_pred hEEEEecccHHHh-hhHHHHhccccCCC-------------------CH-------HH---HHHH-------HHHcCcHH
Confidence 5999999987754 69999875321100 00 00 0000 00112345
Q ss_pred Hhhhc--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHH
Q 008771 242 LMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRA 317 (554)
Q Consensus 242 ~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~ 317 (554)
+++.+ |+.. ..++++.+|||||+|||+|||||+.+|++|||||||++||+.+++++.+++++ .+.|+|+||||++
T Consensus 132 ~l~~l~~gl~~-~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~ 210 (226)
T cd03248 132 FISELASGYDT-EVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLS 210 (226)
T ss_pred HHHhccccccc-hhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 56666 6653 45778999999999999999999999999999999999999999999888753 3689999999999
Q ss_pred HHHhhcceEEEeeCCe
Q 008771 318 FLDQLCTKIVETEMGV 333 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~ 333 (554)
++.. ||+|++|++|+
T Consensus 211 ~~~~-~d~i~~l~~g~ 225 (226)
T cd03248 211 TVER-ADQILVLDGGR 225 (226)
T ss_pred HHHh-CCEEEEecCCc
Confidence 9965 99999999885
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=372.55 Aligned_cols=257 Identities=22% Similarity=0.337 Sum_probs=185.5
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC---eeeEEceeEEEECCC
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGE 124 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge 124 (554)
.+.........++.+..+.+|+++..+.+++.... ....+......|+++||+|+|++ +++|+|+||+|++||
T Consensus 433 ~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~----~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge 508 (711)
T TIGR00958 433 AVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT----GTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGE 508 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC----CCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCC
Confidence 34444455566788888888887765443221110 00011122346999999999964 469999999999999
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHH
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 194 (554)
+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|+||+|++.+ ++.|++||+..+.....
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-F~gTIreNI~~g~~~~~---- 583 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVL-FSGSVRENIAYGLTDTP---- 583 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccc-cccCHHHHHhcCCCCCC----
Confidence 9999999999999999999999999999999998642 59999999987 56799999974321000
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHH
Q 008771 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274 (554)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 274 (554)
.+.+.+. ++..+ +...+.++-+ |++.. ......+||||||||++|||||
T Consensus 584 -~e~i~~a------------------------l~~a~---l~~~i~~lp~--GldT~-ige~G~~LSGGQkQRlalARAL 632 (711)
T TIGR00958 584 -DEEIMAA------------------------AKAAN---AHDFIMEFPN--GYDTE-VGEKGSQLSGGQKQRIAIARAL 632 (711)
T ss_pred -HHHHHHH------------------------HHHcC---CHHHHHhCCC--ccCCc-ccCCCCcCCHHHHHHHHHHHHH
Confidence 0000000 00001 1111111111 33322 2223468999999999999999
Q ss_pred ccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 275 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+++|+||||||||++||+++.+.+.+.....++|+|+|||+++.+. .||+|++|++|++. ..|++++.+.
T Consensus 633 l~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~-~aD~IivL~~G~iv-e~Gt~~eL~~ 702 (711)
T TIGR00958 633 VRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVE-RADQILVLKKGSVV-EMGTHKQLME 702 (711)
T ss_pred hcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHH-hCCEEEEEECCEEE-EeeCHHHHHh
Confidence 9999999999999999999999998844446899999999999986 49999999999874 5688776554
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=326.56 Aligned_cols=207 Identities=24% Similarity=0.401 Sum_probs=161.4
Q ss_pred EEEEeEEEEeCC---eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEE
Q 008771 98 VKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (554)
Q Consensus 98 i~~~~ls~~y~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~ 164 (554)
|+++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 478999999964 469999999999999999999999999999999999999999999998743 2499
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|++|++.++. .||.+|+........ .+.+... .. .. .+.+++.
T Consensus 81 ~~~q~~~~~~-~tv~e~l~~~~~~~~-----~~~~~~~------------------------~~---~~----~~~~~~~ 123 (238)
T cd03249 81 LVSQEPVLFD-GTIAENIRYGKPDAT-----DEEVEEA------------------------AK---KA----NIHDFIM 123 (238)
T ss_pred EECCchhhhh-hhHHHHhhccCCCCC-----HHHHHHH------------------------HH---Hc----ChHHHHH
Confidence 9999987754 699998853211000 0000000 00 00 1122222
Q ss_pred hc--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHH
Q 008771 245 EL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (554)
Q Consensus 245 ~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~ 320 (554)
.+ |+. ...++.+.+|||||+|||+||+||+.+|++|||||||++||+.+++.+.+.|++ .|.|||++|||++++.
T Consensus 124 ~l~~~~~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~ 202 (238)
T cd03249 124 SLPDGYD-TLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR 202 (238)
T ss_pred hhccccc-eeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 22 332 234677899999999999999999999999999999999999999999988753 5789999999999997
Q ss_pred hhcceEEEeeCCeeeeccCChhHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
.||+|++|++|++ .+.|+..++
T Consensus 203 -~~d~v~~l~~G~i-~~~~~~~~~ 224 (238)
T cd03249 203 -NADLIAVLQNGQV-VEQGTHDEL 224 (238)
T ss_pred -hCCEEEEEECCEE-EEeCCHHHH
Confidence 8999999999987 455665544
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=371.79 Aligned_cols=258 Identities=23% Similarity=0.350 Sum_probs=185.2
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~ 125 (554)
.+......+.+++.+..+++|+.+..+.+.+.... ............|+++||+|+|++ +++|+|+||+|++||+
T Consensus 417 p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~---~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~ 493 (694)
T TIGR03375 417 PLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG---TRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEK 493 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCE
Confidence 44445555566777777777776654433221110 000001122345999999999964 5699999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
+||+|+||||||||+++|+|+++|++|+|.++|.+. .|+||+|++.++ +.|++||+...-.+ ..
T Consensus 494 iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf-~~TI~eNi~~~~~~-~~---- 567 (694)
T TIGR03375 494 VAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLF-YGTLRDNIALGAPY-AD---- 567 (694)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhh-hhhHHHHHhCCCCC-CC----
Confidence 999999999999999999999999999999998542 699999999874 56999999643110 00
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 275 (554)
.+++.+.+ +.. .+...+..+- .|++... ......||||||||++|||||+
T Consensus 568 ~~~i~~a~------------------------~~~---~l~~~i~~lp--~gl~T~i-~e~G~~LSgGQrQRlalARall 617 (694)
T TIGR03375 568 DEEILRAA------------------------ELA---GVTEFVRRHP--DGLDMQI-GERGRSLSGGQRQAVALARALL 617 (694)
T ss_pred HHHHHHHH------------------------HHc---ChHHHHHhCc--cccccee-cCCCCCCCHHHHHHHHHHHHHh
Confidence 00000000 000 1111122111 1333222 2334689999999999999999
Q ss_pred cCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
.+|++|||||||++||+.+.+.+.+.|.+ .++|+|+|||+++.+. .||+|++|++|++. ..|++++.+.
T Consensus 618 ~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~~D~iivl~~G~i~-e~G~~~eLl~ 688 (694)
T TIGR03375 618 RDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGRIV-ADGPKDQVLE 688 (694)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEEeCCEEE-eeCCHHHHHH
Confidence 99999999999999999999999988864 4799999999999985 69999999999984 5688776554
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=368.37 Aligned_cols=208 Identities=25% Similarity=0.440 Sum_probs=174.9
Q ss_pred CccEEEEeEEEEeCC-eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccc
Q 008771 95 SSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~ 173 (554)
.++|+++||++.|++ ..+|+|+||+|.+|++++|+|+||||||||+|+|+|+++|++|+|.+++ ..+|||++|++.
T Consensus 506 ~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-~~~igyv~Q~~~-- 582 (718)
T PLN03073 506 PPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-KVRMAVFSQHHV-- 582 (718)
T ss_pred CceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-ceeEEEEecccc--
Confidence 357999999999964 5699999999999999999999999999999999999999999999875 457999999862
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcccc
Q 008771 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (554)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (554)
...++.++....+. . ... ...+.++..+|..+|+.....
T Consensus 583 ~~l~~~~~~~~~~~-------------------------------------~---~~~-~~~~~~i~~~L~~~gl~~~~~ 621 (718)
T PLN03073 583 DGLDLSSNPLLYMM-------------------------------------R---CFP-GVPEQKLRAHLGSFGVTGNLA 621 (718)
T ss_pred ccCCcchhHHHHHH-------------------------------------H---hcC-CCCHHHHHHHHHHCCCChHHh
Confidence 22344333211000 0 000 011356778899999975567
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 254 ~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
++++.+|||||||||+||+||+.+|++|||||||||||+.++++|.+.|.++++|||+||||+.++..+||+|++|++|+
T Consensus 622 ~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~ 701 (718)
T PLN03073 622 LQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGK 701 (718)
T ss_pred cCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 88999999999999999999999999999999999999999999999998766799999999999999999999999999
Q ss_pred eeeccCChhHHHH
Q 008771 334 SRTYEGNYSQYVL 346 (554)
Q Consensus 334 ~~~~~G~~~~~~~ 346 (554)
+..+.|+|++|..
T Consensus 702 i~~~~g~~~~~~~ 714 (718)
T PLN03073 702 VTPFHGTFHDYKK 714 (718)
T ss_pred EEEeCCCHHHHHH
Confidence 8779999988754
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=336.99 Aligned_cols=211 Identities=21% Similarity=0.327 Sum_probs=168.6
Q ss_pred CccEEEEeEEEEeC--CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----CCceeEEEcCCCc------
Q 008771 95 SSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSNM------ 161 (554)
Q Consensus 95 ~~~i~~~~ls~~y~--~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~~~~~------ 161 (554)
...|+++|++++|. ..++|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|.+.
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 45799999999995 3579999999999999999999999999999999999986 5799999987542
Q ss_pred ------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccH
Q 008771 162 ------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (554)
Q Consensus 162 ------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (554)
.++|+||++.++ ..|+++|+...... .. ..+ .+..
T Consensus 158 ~~~lr~~i~~v~q~~~~~-~~ti~eNi~~~~~~---------------~~-~~~----------------------~~~~ 198 (329)
T PRK14257 158 SLELRTRIGMVFQKPTPF-EMSIFDNVAYGPRN---------------NG-IND----------------------RKIL 198 (329)
T ss_pred hHhhhccEEEEecCCccC-CCcHHHHHHhHHHh---------------cC-CCh----------------------HHHH
Confidence 599999999875 57999998632100 00 000 0011
Q ss_pred HHHHHHHhhhcCCCc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEE
Q 008771 236 DAKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMV 310 (554)
Q Consensus 236 ~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvI 310 (554)
++.+..+++.+++.. ...++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|++ .+.|+|
T Consensus 199 ~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii 278 (329)
T PRK14257 199 EKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSII 278 (329)
T ss_pred HHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEE
Confidence 223444555555421 234677899999999999999999999999999999999999999998887753 368999
Q ss_pred EEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+|||+++++.++||+|++|++|++. ..|...+..
T Consensus 279 ~iTH~l~~i~~~~Driivl~~G~i~-e~g~~~~l~ 312 (329)
T PRK14257 279 IVTHSMAQAQRISDETVFFYQGWIE-EAGETKTIF 312 (329)
T ss_pred EEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999985 457666543
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=363.65 Aligned_cols=251 Identities=25% Similarity=0.365 Sum_probs=181.2
Q ss_pred hhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECC
Q 008771 54 VEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGV 131 (554)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~ 131 (554)
..+...+.+..+.+|+.+..+.+++... +.........+.|+++||+|+|++ +++|+|+||+|++||+++|+|+
T Consensus 299 ~~~~~~~~~~~s~~ri~~ll~~~~~~~~----~~~~~~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~ 374 (574)
T PRK11160 299 GAFQHLGQVIASARRINEITEQKPEVTF----PTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGR 374 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCC----CcccCCCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECC
Confidence 3345567777777887665543322110 000001112346999999999964 4699999999999999999999
Q ss_pred CCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHH
Q 008771 132 NGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQK 201 (554)
Q Consensus 132 NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~ 201 (554)
||||||||+++|+|+++|++|+|.++|.+. .|+||+|++.++ +.|++||+..+..+. ..+.+..
T Consensus 375 sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ti~~Ni~~~~~~~-----~~~~i~~ 448 (574)
T PRK11160 375 TGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLF-SATLRDNLLLAAPNA-----SDEALIE 448 (574)
T ss_pred CCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhh-cccHHHHhhcCCCcc-----CHHHHHH
Confidence 999999999999999999999999998642 499999999875 569999986432100 0000000
Q ss_pred HHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeE
Q 008771 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281 (554)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lL 281 (554)
.+ +..+ +...+.+ --|++.. .......||||||||++|||||+.+|++|
T Consensus 449 al------------------------~~~~---l~~~i~~---p~GldT~-vge~g~~LSgGqrqRialARall~~~~il 497 (574)
T PRK11160 449 VL------------------------QQVG---LEKLLED---DKGLNAW-LGEGGRQLSGGEQRRLGIARALLHDAPLL 497 (574)
T ss_pred HH------------------------HHcC---CHHHHcC---ccccCch-hcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 00 0000 1111111 1122221 12235689999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 282 LLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 282 lLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
||||||++||+.+.+.+.+.|.+ .++|+|+|||+++.+.. ||+|++|++|++. ..|++++.+..
T Consensus 498 ilDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~~~ 563 (574)
T PRK11160 498 LLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ-FDRICVMDNGQII-EQGTHQELLAQ 563 (574)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh-CCEEEEEeCCeEE-EeCCHHHHHhc
Confidence 99999999999999999988864 47899999999999975 9999999999984 56888776543
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=362.71 Aligned_cols=212 Identities=23% Similarity=0.400 Sum_probs=175.3
Q ss_pred CccEEEEeEEEEeC-----------CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---
Q 008771 95 SSGVKLENISKSYK-----------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~-----------~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--- 160 (554)
.++|+++|+++.|+ ++.+|+||||+|++||++||+|+||||||||+|+|+|+++ ++|+|.++|.+
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccc
Confidence 45799999999995 3579999999999999999999999999999999999994 89999998732
Q ss_pred ----------ceEEEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHH
Q 008771 161 ----------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228 (554)
Q Consensus 161 ----------~~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (554)
..|+|+||++. +++..||.+|+...+.. .. .
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~---------------~~----------------------~ 394 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRV---------------HQ----------------------P 394 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHh---------------cc----------------------c
Confidence 24899999973 66778999998532100 00 0
Q ss_pred hCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----c
Q 008771 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (554)
Q Consensus 229 ~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~ 304 (554)
.......+.++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+ +
T Consensus 395 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 474 (529)
T PRK15134 395 TLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474 (529)
T ss_pred cCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh
Confidence 001112345677889999996445789999999999999999999999999999999999999999999988875 2
Q ss_pred CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 305 ~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
.|.|||+||||++++..+||+|++|++|++. ..|+.+++.
T Consensus 475 ~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 514 (529)
T PRK15134 475 HQLAYLFISHDLHVVRALCHQVIVLRQGEVV-EQGDCERVF 514 (529)
T ss_pred hCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-EEcCHHHHh
Confidence 4899999999999999999999999999874 556665543
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=365.36 Aligned_cols=258 Identities=20% Similarity=0.341 Sum_probs=183.2
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~ 125 (554)
.+......+..++.++.+.+|+.+..+.+.+.... ... . ......|+++||+|+|++ +++|+|+||+|++|++
T Consensus 297 pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~--~~~-~--~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~ 371 (582)
T PRK11176 297 PLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG--KRV-I--ERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKT 371 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC--CcC-C--CCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCE
Confidence 34444444455677777777766654332211100 000 0 012235999999999964 5799999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
+||+|+||||||||+++|+|+++|++|+|.++|.+. .|+|+||++.++ +.|+++|+..+..+...
T Consensus 372 ~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf-~~Ti~~Ni~~~~~~~~~---- 446 (582)
T PRK11176 372 VALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLF-NDTIANNIAYARTEQYS---- 446 (582)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceee-cchHHHHHhcCCCCCCC----
Confidence 999999999999999999999999999999998642 599999999874 57999999753110000
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 275 (554)
.+++...+ +.. .+.+.+.++- -|++... ...-..||||||||++|||||+
T Consensus 447 ~~~i~~al------------------------~~~---~l~~~i~~lp--~Gldt~i-g~~g~~LSGGqrQRi~LARall 496 (582)
T PRK11176 447 REQIEEAA------------------------RMA---YAMDFINKMD--NGLDTVI-GENGVLLSGGQRQRIAIARALL 496 (582)
T ss_pred HHHHHHHH------------------------HHh---CcHHHHHhcc--cccCcee-CCCCCcCCHHHHHHHHHHHHHH
Confidence 00000000 000 0111111111 1333222 2223679999999999999999
Q ss_pred cCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
.+|++|||||||++||+++...+.+.+.+ .++|+|+|||+++.+. .||+|++|++|++. ..|++++.++.
T Consensus 497 ~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~-e~g~~~~l~~~ 568 (582)
T PRK11176 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-KADEILVVEDGEIV-ERGTHAELLAQ 568 (582)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEE-EeCCHHHHHhC
Confidence 99999999999999999999999888764 4799999999999886 59999999999974 56888776554
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=346.86 Aligned_cols=249 Identities=26% Similarity=0.372 Sum_probs=178.2
Q ss_pred HHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCCe-eeEEceeEEEECCCEEEEECCCCcc
Q 008771 57 KSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAG 135 (554)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~~-~~l~~isl~i~~Ge~~~lvG~NGsG 135 (554)
...+.+.++.+.++...+.+......... .......+..++++|+++.|++. ++++|+||++++|+.++|||+||||
T Consensus 282 H~~~~g~aa~d~i~~~l~~~~~~~~~~~~--~~~~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaG 359 (559)
T COG4988 282 HAAAAGEAAADKLFTLLESPVATPGSGEK--AEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAG 359 (559)
T ss_pred HHHhhhhhHHHHHHHHhcCCCCCCCCccc--cccccCCCceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCC
Confidence 34555566666666655544321111000 00111122335566999999754 8999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Q 008771 136 KTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205 (554)
Q Consensus 136 KSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (554)
||||+++|+|+.+|++|+|.++|.+. +|+||+|+|.+ +..|++||+..+-... ..+.+.+.++
T Consensus 360 KSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~l-f~gTireNi~l~~~~~-----s~e~i~~al~- 432 (559)
T COG4988 360 KSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYL-FAGTIRENILLARPDA-----SDEEIIAALD- 432 (559)
T ss_pred HHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCcc-ccccHHHHhhccCCcC-----CHHHHHHHHH-
Confidence 99999999999999999999998642 59999999988 5669999996532100 0000000000
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh-cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeec
Q 008771 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE-LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284 (554)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLD 284 (554)
...+.++++. -|++.. ....-..|||||+|||+|||||+.+++++|||
T Consensus 433 ------------------------------~a~l~~~v~~p~GLdt~-ige~G~~LSgGQ~QRlaLARAll~~~~l~llD 481 (559)
T COG4988 433 ------------------------------QAGLLEFVPKPDGLDTV-IGEGGAGLSGGQAQRLALARALLSPASLLLLD 481 (559)
T ss_pred ------------------------------HhcHHHhhcCCCcccch-hccCCCCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 0011111121 233221 12223579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 285 EPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 285 EPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
|||+|||.++.+.+.+.|.+ .++|+|+|||++..+.. ||+|++|++|++ ...|++++..+.
T Consensus 482 EpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~D~I~vld~G~l-~~~g~~~~L~~~ 544 (559)
T COG4988 482 EPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRL-VEQGTHEELSEK 544 (559)
T ss_pred CCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-CCEEEEecCCce-eccCCHHHHhhc
Confidence 99999999999999888754 57999999999999976 999999999997 567888776554
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=318.00 Aligned_cols=185 Identities=25% Similarity=0.358 Sum_probs=157.2
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEEec
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v~Q 168 (554)
|+++|+++.|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEecc
Confidence 478999999999999999999999999999999999999999999999999999999998854 35899999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++..|+.+|+..... ... .. +.++.++++.+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~-----------------------------------------~~~-~~-~~~~~~~l~~~~l 117 (198)
T TIGR01189 81 LPGLKPELSALENLHFWAA-----------------------------------------IHG-GA-QRTIEDALAAVGL 117 (198)
T ss_pred CcccccCCcHHHHHHHHHH-----------------------------------------HcC-Cc-HHHHHHHHHHcCC
Confidence 9888777899998752110 000 01 2356677888888
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcce
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~ 325 (554)
. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++..+.+.+++ .|.|+|++||+...+ .|++
T Consensus 118 ~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~~~~ 194 (198)
T TIGR01189 118 T-GFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--VEAR 194 (198)
T ss_pred H-HHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--cceE
Confidence 6 456888999999999999999999999999999999999999999999888753 488999999998665 3677
Q ss_pred EEE
Q 008771 326 IVE 328 (554)
Q Consensus 326 i~~ 328 (554)
++.
T Consensus 195 ~~~ 197 (198)
T TIGR01189 195 ELR 197 (198)
T ss_pred Eee
Confidence 664
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=322.60 Aligned_cols=202 Identities=28% Similarity=0.347 Sum_probs=166.1
Q ss_pred cEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC---CCceeEEEcCCC-------ce
Q 008771 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE---PDSGNVIKAKSN-------MK 162 (554)
Q Consensus 97 ~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~---p~~G~I~~~~~~-------~~ 162 (554)
.+.++||++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+ ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 3689999999964 579999999999999999999999999999999999999 999999998753 35
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH-
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK- 241 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 241 (554)
|+|++|++.+++..||.+|+....... ... ....+....++..
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~-------------~~~-----------------------~~~~~~~~~~~~~~ 126 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILR-------------LPR-----------------------KSSDAIRKKRVEDV 126 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhh-------------ccc-----------------------ccchHHHHHHHHHH
Confidence 999999998888889999985321100 000 0000011122334
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCH-H
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDR-A 317 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~-~ 317 (554)
+++.+++. ...++.+.+|||||+|||+|||||+.+|++|||||||++||+.++..+.+.+++ .+.|+|++||++ +
T Consensus 127 ~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~ 205 (226)
T cd03234 127 LLRDLALT-RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRS 205 (226)
T ss_pred HHHhhcch-hhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCH
Confidence 67778875 345788899999999999999999999999999999999999999999888753 478999999998 6
Q ss_pred HHHhhcceEEEeeCCeee
Q 008771 318 FLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~ 335 (554)
.+.++||+|++|++|++.
T Consensus 206 ~~~~~~d~i~~l~~G~i~ 223 (226)
T cd03234 206 DLFRLFDRILLLSSGEIV 223 (226)
T ss_pred HHHHhCCEEEEEeCCEEE
Confidence 888999999999999874
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=325.56 Aligned_cols=209 Identities=19% Similarity=0.232 Sum_probs=170.4
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-----CceeEEEcCCC---------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~~~~--------- 160 (554)
+..+.++++++.|++.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred CceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 3558999999999988999999999999999999999999999999999999986 79999998743
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|++|++.++ ..|+.+|+...... . .. ......
T Consensus 86 ~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~---------------~------------------------~~-~~~~~~ 124 (261)
T PRK14263 86 VVRRYIGMVFQQPNPF-SMSIFDNVAFGLRL---------------N------------------------RY-KGDLGD 124 (261)
T ss_pred hhhhceEEEecCCccc-cccHHHHHHHHHhh---------------c------------------------Cc-hHHHHH
Confidence 2489999998875 68999998532100 0 00 001123
Q ss_pred HHHHHhhhcCCCcc---ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 238 KVSKLMPELGFTAD---DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 238 ~~~~~l~~lgl~~~---~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
++.++++.+|+... ..++++.+|||||+||++|||||+.+|++|||||||++||+.++.++.+++++ .+.|+|+|
T Consensus 125 ~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~i 204 (261)
T PRK14263 125 RVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALV 204 (261)
T ss_pred HHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 45566677776421 33567889999999999999999999999999999999999999999988764 36899999
Q ss_pred ecCHHHHHhhcceEEEee--------CCeeeeccCChhHHH
Q 008771 313 SHDRAFLDQLCTKIVETE--------MGVSRTYEGNYSQYV 345 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~--------~g~~~~~~G~~~~~~ 345 (554)
|||++++.++||+|++|+ +|++. ..|+.+++.
T Consensus 205 sH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~-~~g~~~~~~ 244 (261)
T PRK14263 205 THNMQQAIRVADTTAFFSVDISQGTRTGYLV-EMGPTAQIF 244 (261)
T ss_pred eCCHHHHHHhCCEEEEEecccccccCCceEE-EeCCHHHHH
Confidence 999999999999999996 78764 456666544
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=317.16 Aligned_cols=193 Identities=27% Similarity=0.383 Sum_probs=151.9
Q ss_pred EEEEeEEEEeCCe-----eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccc
Q 008771 98 VKLENISKSYKGV-----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (554)
Q Consensus 98 i~~~~ls~~y~~~-----~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~ 172 (554)
|+++||+++|++. ++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++| .|+|++|++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g---~i~~~~q~~~l 77 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---SIAYVSQEPWI 77 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC---EEEEEecCchh
Confidence 4789999999764 699999999999999999999999999999999999999999999987 79999999987
Q ss_pred ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCc
Q 008771 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTA 250 (554)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~ 250 (554)
+ ..|+.+|+........ +...... +.. . +.+.+..+ |+.
T Consensus 78 ~-~~t~~enl~~~~~~~~------~~~~~~~------------------------~~~---~----l~~~~~~~~~~~~- 118 (204)
T cd03250 78 Q-NGTIRENILFGKPFDE------ERYEKVI------------------------KAC---A----LEPDLEILPDGDL- 118 (204)
T ss_pred c-cCcHHHHhccCCCcCH------HHHHHHH------------------------HHc---C----cHHHHHhccCccc-
Confidence 5 5699999864311000 0000000 000 0 01111111 222
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHH-HHc---cCCCeEEEEecCHHHHHhhcceE
Q 008771 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG-YLG---KQDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~---~~g~tvIiisHd~~~l~~~~d~i 326 (554)
...++.+.+||||||||++|||||+.+|++|||||||++||+.+.+++.+ +++ +.+.|||++||+++++.. ||+|
T Consensus 119 ~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i 197 (204)
T cd03250 119 TEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQI 197 (204)
T ss_pred ceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEE
Confidence 23456688999999999999999999999999999999999999888876 343 347899999999999987 9999
Q ss_pred EEeeCCe
Q 008771 327 VETEMGV 333 (554)
Q Consensus 327 ~~l~~g~ 333 (554)
++|++|+
T Consensus 198 ~~l~~G~ 204 (204)
T cd03250 198 VVLDNGR 204 (204)
T ss_pred EEEeCCC
Confidence 9999873
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=371.87 Aligned_cols=259 Identities=22% Similarity=0.338 Sum_probs=185.4
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeC-CeeeEEceeEEEECCCEE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKV 126 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~ 126 (554)
.+......+..++.++.+++|+.+....+.+....... .........|+++||+|+|+ ++++|+|+||+|++|+++
T Consensus 427 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~---~~~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~v 503 (708)
T TIGR01193 427 PLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKR---TELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKT 503 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccc---cCCCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEE
Confidence 34444455566777777777776654332211110000 00112234699999999997 467999999999999999
Q ss_pred EEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHH
Q 008771 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (554)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (554)
||+|+||||||||+++|+|+++|++|+|.++|.+. .|+||||++.+ ++.|++||+..+...... .
T Consensus 504 aIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-f~gTI~eNi~l~~~~~~~----~ 578 (708)
T TIGR01193 504 TIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYI-FSGSILENLLLGAKENVS----Q 578 (708)
T ss_pred EEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCcee-hhHHHHHHHhccCCCCCC----H
Confidence 99999999999999999999999999999998642 59999999988 456999999743100000 0
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHcc
Q 008771 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (554)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 276 (554)
+++.+.+ +.. .+.+.+.++- .|++.. .......||||||||++|||||+.
T Consensus 579 ~~i~~a~------------------------~~a---~l~~~i~~lp--~gldt~-i~e~G~~LSgGQrQRialARall~ 628 (708)
T TIGR01193 579 DEIWAAC------------------------EIA---EIKDDIENMP--LGYQTE-LSEEGSSISGGQKQRIALARALLT 628 (708)
T ss_pred HHHHHHH------------------------HHh---CCHHHHHhcc--cccCcE-ecCCCCCCCHHHHHHHHHHHHHhh
Confidence 0000000 000 1111111111 133322 223346899999999999999999
Q ss_pred CCCeEeecCCCCCCCHHHHHHHHHHHcc-CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK-QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 277 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~-~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+|++|||||||++||+.+.+.+.+.|++ .++|+|+|||+++.+. .||+|++|++|++ ...|++++.+.
T Consensus 629 ~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~-~~D~i~~l~~G~i-~~~G~~~~L~~ 697 (708)
T TIGR01193 629 DSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAK-QSDKIIVLDHGKI-IEQGSHDELLD 697 (708)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHH-cCCEEEEEECCEE-EEECCHHHHHh
Confidence 9999999999999999999999888865 4789999999999885 5999999999998 46788877654
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=363.10 Aligned_cols=213 Identities=19% Similarity=0.280 Sum_probs=174.0
Q ss_pred ccEEEEeEEEEeC---CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-CCceeEEEcCCC-----------
Q 008771 96 SGVKLENISKSYK---GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKSN----------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~---~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-p~~G~I~~~~~~----------- 160 (554)
++|+++|+++.|+ ++++|+|+||+|++||++||+|+||||||||+|+|+|+++ |++|+|.++|.+
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 4699999999994 4579999999999999999999999999999999999998 599999998742
Q ss_pred ceEEEEeccc---ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 MKIAFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ~~i~~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|++|++ .+++..||.+|+....... +.. ....+.....+
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~-------------~~~---------------------~~~~~~~~~~~ 383 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDR-------------FTG---------------------GSRIDDAAELK 383 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhh-------------hcc---------------------CcccChHHHHH
Confidence 2489999996 3567789999985321000 000 00001112235
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEec
Q 008771 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISH 314 (554)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisH 314 (554)
++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+ +.|.|||+|||
T Consensus 384 ~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sH 463 (506)
T PRK13549 384 TILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISS 463 (506)
T ss_pred HHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECC
Confidence 678889999996446789999999999999999999999999999999999999999999888764 45899999999
Q ss_pred CHHHHHhhcceEEEeeCCeeeeccCChhH
Q 008771 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~~~~G~~~~ 343 (554)
|++++.++||++++|++|++. +.|+.++
T Consensus 464 d~~~~~~~~d~v~~l~~G~i~-~~~~~~~ 491 (506)
T PRK13549 464 ELPEVLGLSDRVLVMHEGKLK-GDLINHN 491 (506)
T ss_pred CHHHHHHhCCEEEEEECCEEE-EEecccc
Confidence 999999999999999999974 5555544
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=363.06 Aligned_cols=252 Identities=21% Similarity=0.356 Sum_probs=181.3
Q ss_pred hhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC-eeeEEceeEEEECCCEEEE
Q 008771 50 SAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGL 128 (554)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~l 128 (554)
......+..++.+...++++.+....+.+........ ........|+++|++|+|++ +++|+|+||+|++||+++|
T Consensus 290 ~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~---~~~~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~I 366 (588)
T PRK13657 290 DQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAI---DLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAI 366 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCC---CcCCCCCeEEEEEEEEEeCCCCceecceeEEECCCCEEEE
Confidence 3344444556677777777766544322111000000 01112245999999999975 5799999999999999999
Q ss_pred ECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEEEecccccccCccHHHHHHHhhHH--HHHHHHHH
Q 008771 129 VGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFLSQEFEVSMSRTVREEFMSAFKE--EMEIAGKL 196 (554)
Q Consensus 129 vG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~--~~~~~~~~ 196 (554)
+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|+||++.++ ..|++||+..+-.+ ..+..
T Consensus 367 vG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~~Ni~~~~~~~~d~~i~--- 442 (588)
T PRK13657 367 VGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLF-NRSIEDNIRVGRPDATDEEMR--- 442 (588)
T ss_pred ECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccc-cccHHHHHhcCCCCCCHHHHH---
Confidence 99999999999999999999999999999854 2699999999874 67999999743110 00000
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCccccCCCCCCCChhHHHHHHHHHHH
Q 008771 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKIL 274 (554)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL 274 (554)
..+. . .. +.+.+..+ |++.. .......||||||||++|||||
T Consensus 443 ----~al~------------------------~---~~----l~~~i~~lp~gldt~-i~~~g~~LSgGq~QRialARal 486 (588)
T PRK13657 443 ----AAAE------------------------R---AQ----AHDFIERKPDGYDTV-VGERGRQLSGGERQRLAIARAL 486 (588)
T ss_pred ----HHHH------------------------H---hC----HHHHHHhCcccccch-hcCCCCCCCHHHHHHHHHHHHH
Confidence 0000 0 00 11112211 33221 1223457999999999999999
Q ss_pred ccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 275 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+.+|++|||||||++||+.+.+.+.+.+.+ .++|+|+||||++.+. .||+|++|++|++. ..|++++...
T Consensus 487 l~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~-~~g~~~~l~~ 558 (588)
T PRK13657 487 LKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-NADRILVFDNGRVV-ESGSFDELVA 558 (588)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-hCCEEEEEECCEEE-EeCCHHHHHH
Confidence 999999999999999999999999888764 4799999999999885 59999999999975 4677766654
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=329.82 Aligned_cols=198 Identities=22% Similarity=0.378 Sum_probs=160.0
Q ss_pred EEEEeEEEEeC--CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEE
Q 008771 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (554)
Q Consensus 98 i~~~~ls~~y~--~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~ 165 (554)
|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|.++|.+. .|+|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 89999999994 4679999999999999999999999999999999999997 799999998532 5999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
+||++.+++ .|+++|+... .. ..+.++.++++.
T Consensus 82 v~q~~~lf~-~tv~~nl~~~-~~---------------------------------------------~~~~~~~~~l~~ 114 (275)
T cd03289 82 IPQKVFIFS-GTFRKNLDPY-GK---------------------------------------------WSDEEIWKVAEE 114 (275)
T ss_pred ECCCcccch-hhHHHHhhhc-cC---------------------------------------------CCHHHHHHHHHH
Confidence 999998865 5999987411 00 001122223333
Q ss_pred cCCCccccCCCC-----------CCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 008771 246 LGFTADDGDRLV-----------ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (554)
Q Consensus 246 lgl~~~~~~~~~-----------~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIii 312 (554)
+|+. ...++.+ ..|||||+||++|||||+.+|+||||||||++||+.+...+.+.|++ .++|||+|
T Consensus 115 ~gL~-~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~i 193 (275)
T cd03289 115 VGLK-SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILS 193 (275)
T ss_pred cCCH-HHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 4443 1223333 35999999999999999999999999999999999999999988764 47899999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
|||++++.. ||||++|++|++. +.|...+.+.
T Consensus 194 sH~~~~i~~-~dri~vl~~G~i~-~~g~~~~l~~ 225 (275)
T cd03289 194 EHRIEAMLE-CQRFLVIEENKVR-QYDSIQKLLN 225 (275)
T ss_pred ECCHHHHHh-CCEEEEecCCeEe-ecCCHHHHhh
Confidence 999999975 9999999999985 4566666554
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=322.58 Aligned_cols=208 Identities=25% Similarity=0.396 Sum_probs=161.3
Q ss_pred EEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEE
Q 008771 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (554)
Q Consensus 98 i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v 166 (554)
|+++|++++|+ ++.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 47899999996 56799999999999999999999999999999999999999999999987432 49999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
+|++.++ ..|+.+|+........ ...+.. .... ..+.+.+..+
T Consensus 81 ~q~~~~~-~~tv~~nl~~~~~~~~-----~~~~~~------------------------~~~~-------~~l~~~~~~l 123 (236)
T cd03253 81 PQDTVLF-NDTIGYNIRYGRPDAT-----DEEVIE------------------------AAKA-------AQIHDKIMRF 123 (236)
T ss_pred CCCChhh-cchHHHHHhhcCCCCC-----HHHHHH------------------------HHHH-------cCcHHHHHhc
Confidence 9998776 4699999854311000 000000 0000 0111222222
Q ss_pred --CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhh
Q 008771 247 --GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 247 --gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~ 322 (554)
|+. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.+ .|.|||++||+++++..
T Consensus 124 ~~~~~-~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~- 201 (236)
T cd03253 124 PDGYD-TIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN- 201 (236)
T ss_pred ccccc-chhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-
Confidence 332 234667889999999999999999999999999999999999999998887743 28899999999999975
Q ss_pred cceEEEeeCCeeeeccCChhHHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
||++++|++|++. +.|+..++.
T Consensus 202 ~d~~~~l~~g~i~-~~~~~~~~~ 223 (236)
T cd03253 202 ADKIIVLKDGRIV-ERGTHEELL 223 (236)
T ss_pred CCEEEEEECCEEE-eeCCHHHHh
Confidence 9999999999874 556655443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=319.84 Aligned_cols=200 Identities=26% Similarity=0.371 Sum_probs=156.6
Q ss_pred EEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEE
Q 008771 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (554)
Q Consensus 98 i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~ 165 (554)
|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 789999999964 479999999999999999999999999999999999999999999998743 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.++ ..|+.+|+.... . .. .+.+... .+.. .+...+..+ .
T Consensus 83 ~~q~~~l~-~~tv~enl~~~~-~-~~----~~~~~~~------------------------~~~~---~l~~~~~~l--~ 126 (221)
T cd03244 83 IPQDPVLF-SGTIRSNLDPFG-E-YS----DEELWQA------------------------LERV---GLKEFVESL--P 126 (221)
T ss_pred ECCCCccc-cchHHHHhCcCC-C-CC----HHHHHHH------------------------HHHh---CcHHHHHhc--c
Confidence 99998865 469999874210 0 00 0000000 0000 011111111 1
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhc
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~ 323 (554)
.|+.. ..++.+..|||||+||++|||||+.+|++|||||||++||+.+++++.+.|++ .+.|||++|||++++.. |
T Consensus 127 ~~l~~-~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~ 204 (221)
T cd03244 127 GGLDT-VVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-S 204 (221)
T ss_pred ccccc-ccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-C
Confidence 23332 23567899999999999999999999999999999999999999999998864 36899999999999976 9
Q ss_pred ceEEEeeCCeee
Q 008771 324 TKIVETEMGVSR 335 (554)
Q Consensus 324 d~i~~l~~g~~~ 335 (554)
|+|++|++|++.
T Consensus 205 d~i~~l~~g~~~ 216 (221)
T cd03244 205 DRILVLDKGRVV 216 (221)
T ss_pred CEEEEEECCeEE
Confidence 999999999874
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=360.75 Aligned_cols=257 Identities=24% Similarity=0.382 Sum_probs=192.1
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeC-CeeeEEceeEEEECCCEE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKV 126 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~ 126 (554)
.+......+..++.+..+.+|+++..+.++........ .......|+++||+|+|+ ++++|+|+||+|++||++
T Consensus 284 ~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~-----~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~v 358 (567)
T COG1132 284 PILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP-----LKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKV 358 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC-----CCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCCEE
Confidence 45555555566788888889888877664321111100 112334599999999998 578999999999999999
Q ss_pred EEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHH
Q 008771 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (554)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (554)
||||+||||||||+++|+|+++|++|+|.++|.++ .|+||||++.++. .||++|+..+-.+.. .
T Consensus 359 aiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~at-----~ 432 (567)
T COG1132 359 AIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPDAT-----D 432 (567)
T ss_pred EEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCCCC-----H
Confidence 99999999999999999999999999999988653 5999999999855 899999976521100 0
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHcc
Q 008771 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (554)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 276 (554)
+++.+.+. . ..+...+.++.+ |++... ......||||||||++||||++.
T Consensus 433 eei~~a~k------------------------~---a~~~d~I~~lp~--g~dt~v-ge~G~~LSgGQrQrlaiARall~ 482 (567)
T COG1132 433 EEIEEALK------------------------L---ANAHEFIANLPD--GYDTIV-GERGVNLSGGQRQRLAIARALLR 482 (567)
T ss_pred HHHHHHHH------------------------H---hChHHHHHhCcc--ccccee-cCCCccCCHHHHHHHHHHHHHhc
Confidence 00000000 0 011111222211 443322 23345899999999999999999
Q ss_pred CCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 277 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
+|++||||||||+||..+...+.+.+.+ .++|+|+|+|+++.+.. ||+|++|++|++ ...|++++.+..
T Consensus 483 ~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i-~e~G~h~eLl~~ 553 (567)
T COG1132 483 NPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRI-VERGTHEELLAK 553 (567)
T ss_pred CCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEE-EEecCHHHHHHc
Confidence 9999999999999999999999888742 46799999999999987 999999999995 667888887765
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=314.80 Aligned_cols=185 Identities=24% Similarity=0.371 Sum_probs=155.2
Q ss_pred ccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceE
Q 008771 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (554)
Q Consensus 96 ~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i 163 (554)
..|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 35899999999975 479999999999999999999999999999999999999999999998743 259
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+|++|++.++. .|+.+|+..... .. ...+.+.+
T Consensus 85 ~~v~q~~~~~~-~tv~~~l~~~~~------------------------------------------~~----~~~~~~~l 117 (207)
T cd03369 85 TIIPQDPTLFS-GTIRSNLDPFDE------------------------------------------YS----DEEIYGAL 117 (207)
T ss_pred EEEecCCcccC-ccHHHHhcccCC------------------------------------------CC----HHHHHHHh
Confidence 99999997754 599998742100 00 01111222
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~ 321 (554)
+ .++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|+|++|||++++..
T Consensus 118 ~--------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 118 R--------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred h--------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 2 2456789999999999999999999999999999999999999999988864 37899999999999976
Q ss_pred hcceEEEeeCCeeee
Q 008771 322 LCTKIVETEMGVSRT 336 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~ 336 (554)
||++++|++|++..
T Consensus 190 -~d~v~~l~~g~i~~ 203 (207)
T cd03369 190 -YDKILVMDAGEVKE 203 (207)
T ss_pred -CCEEEEEECCEEEe
Confidence 99999999998753
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=310.75 Aligned_cols=162 Identities=26% Similarity=0.430 Sum_probs=145.1
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~ 164 (554)
++|+++|++++| +|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 3 ~~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (182)
T cd03215 3 PVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78 (182)
T ss_pred cEEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE
Confidence 369999999999 9999999999999999999999999999999999999999999998742 2599
Q ss_pred EEeccc---ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 165 FLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 165 ~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
|++|++ .+++..|+.||+...
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~-------------------------------------------------------- 102 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALS-------------------------------------------------------- 102 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHH--------------------------------------------------------
Confidence 999995 456678998886310
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~ 318 (554)
..|||||+||++|||||+.+|++|||||||++||+.+++.+.+.+++ .+.|+|++|||+++
T Consensus 103 ----------------~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 166 (182)
T cd03215 103 ----------------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDE 166 (182)
T ss_pred ----------------hhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 00999999999999999999999999999999999999999887753 47899999999999
Q ss_pred HHhhcceEEEeeCCe
Q 008771 319 LDQLCTKIVETEMGV 333 (554)
Q Consensus 319 l~~~~d~i~~l~~g~ 333 (554)
+..+||+|++|++|+
T Consensus 167 ~~~~~d~v~~l~~G~ 181 (182)
T cd03215 167 LLGLCDRILVMYEGR 181 (182)
T ss_pred HHHhCCEEEEecCCc
Confidence 999999999999885
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=321.37 Aligned_cols=207 Identities=23% Similarity=0.330 Sum_probs=167.8
Q ss_pred cEEEEeEEEEeCC--------------------eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEE
Q 008771 97 GVKLENISKSYKG--------------------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (554)
Q Consensus 97 ~i~~~~ls~~y~~--------------------~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~ 156 (554)
.|+++||++.|.. +++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 3677777777622 34999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH
Q 008771 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (554)
Q Consensus 157 ~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (554)
+| .+++++|++.+.+..|+.+|+..... .. ........
T Consensus 84 ~g---~~~~~~~~~~~~~~~tv~enl~~~~~---------------~~------------------------~~~~~~~~ 121 (264)
T PRK13546 84 NG---EVSVIAISAGLSGQLTGIENIEFKML---------------CM------------------------GFKRKEIK 121 (264)
T ss_pred CC---EEeEEecccCCCCCCcHHHHHHHHHH---------------Hc------------------------CCCHHHHH
Confidence 87 36788888777677899998743110 00 00011122
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEe
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiis 313 (554)
..+..+++.+++. ...++++.+|||||+|||+||+||+.+|++|||||||++||+.++..+.+.|. +.|.|+|+||
T Consensus 122 ~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiis 200 (264)
T PRK13546 122 AMTPKIIEFSELG-EFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVS 200 (264)
T ss_pred HHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 3445566777775 45688899999999999999999999999999999999999999888888764 3589999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
||++++..+||+|++|++|++. ..|+++++...
T Consensus 201 H~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~~~~ 233 (264)
T PRK13546 201 HNLGQVRQFCTKIAWIEGGKLK-DYGELDDVLPK 233 (264)
T ss_pred CCHHHHHHHcCEEEEEECCEEE-EeCCHHHHHHH
Confidence 9999999999999999999975 55777766543
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=308.70 Aligned_cols=162 Identities=33% Similarity=0.471 Sum_probs=144.4
Q ss_pred EEEEeEEEEeCCe--eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEE
Q 008771 98 VKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (554)
Q Consensus 98 i~~~~ls~~y~~~--~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v 166 (554)
|+++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4789999999765 79999999999999999999999999999999999999999999998753 248999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
+|++.+++ .|+.+|+
T Consensus 81 ~q~~~~~~-~tv~~~i---------------------------------------------------------------- 95 (178)
T cd03247 81 NQRPYLFD-TTLRNNL---------------------------------------------------------------- 95 (178)
T ss_pred ccCCeeec-ccHHHhh----------------------------------------------------------------
Confidence 99986653 4665442
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcc
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d 324 (554)
+..|||||+||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|+|++|||++++. .||
T Consensus 96 ----------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d 164 (178)
T cd03247 96 ----------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMD 164 (178)
T ss_pred ----------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCC
Confidence 358999999999999999999999999999999999999999888753 4789999999999996 699
Q ss_pred eEEEeeCCeee
Q 008771 325 KIVETEMGVSR 335 (554)
Q Consensus 325 ~i~~l~~g~~~ 335 (554)
++++|++|++.
T Consensus 165 ~~~~l~~g~i~ 175 (178)
T cd03247 165 KILFLENGKII 175 (178)
T ss_pred EEEEEECCEEE
Confidence 99999999874
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=359.98 Aligned_cols=209 Identities=14% Similarity=0.261 Sum_probs=169.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~ 164 (554)
++|+++|+++.|+ .+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|.+ ..|+
T Consensus 264 ~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 341 (510)
T PRK09700 264 TVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341 (510)
T ss_pred cEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcE
Confidence 4799999999874 48999999999999999999999999999999999999999999998742 2489
Q ss_pred EEeccc---ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 165 FLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 165 ~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
|+||++ .+++..||.+|+......... .... .. ..........++.+
T Consensus 342 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~----------~~~~------~~--------------~~~~~~~~~~~~~~ 391 (510)
T PRK09700 342 YITESRRDNGFFPNFSIAQNMAISRSLKDG----------GYKG------AM--------------GLFHEVDEQRTAEN 391 (510)
T ss_pred EccCccccCCCcCCCcHHHHhccccccccc----------cccc------cc--------------cccChHHHHHHHHH
Confidence 999984 566788999998532100000 0000 00 00000112245678
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAF 318 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~ 318 (554)
+++.+|+..+..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+ +.|.|||+||||+++
T Consensus 392 ~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~ 471 (510)
T PRK09700 392 QRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPE 471 (510)
T ss_pred HHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 89999996456789999999999999999999999999999999999999999999988874 358999999999999
Q ss_pred HHhhcceEEEeeCCeeee
Q 008771 319 LDQLCTKIVETEMGVSRT 336 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~ 336 (554)
+..+||+|++|++|++..
T Consensus 472 ~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 472 IITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred HHhhCCEEEEEECCEEEE
Confidence 999999999999998753
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=319.06 Aligned_cols=182 Identities=25% Similarity=0.438 Sum_probs=157.6
Q ss_pred ccEEEEeEEEEeCC---------eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEE
Q 008771 96 SGVKLENISKSYKG---------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFL 166 (554)
Q Consensus 96 ~~i~~~~ls~~y~~---------~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v 166 (554)
++++++|+++.|.. ..+++||||+|++||++||||+||||||||.|+|+|+++|++|+|+++|.+..
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~---- 78 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDIT---- 78 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchh----
Confidence 46899999999942 37999999999999999999999999999999999999999999999986521
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
.++ ..+..+++.++|+.+
T Consensus 79 --------~~~------------------------------------------------------~~~~~~~v~elL~~V 96 (268)
T COG4608 79 --------KLS------------------------------------------------------KEERRERVLELLEKV 96 (268)
T ss_pred --------hcc------------------------------------------------------hhHHHHHHHHHHHHh
Confidence 000 012345678889999
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhh
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~ 322 (554)
|++.+..+|+|++|||||+||++|||||+.+|+++++|||||+||...+..+.++|+ +.|.|++|||||+..+..+
T Consensus 97 gl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 97 GLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred CCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence 999989999999999999999999999999999999999999999988888777764 4699999999999999999
Q ss_pred cceEEEeeCCeeeeccCChhHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
||||.+|..|+++.. |+.++.
T Consensus 177 sdri~VMy~G~iVE~-g~~~~~ 197 (268)
T COG4608 177 SDRIAVMYLGKIVEI-GPTEEV 197 (268)
T ss_pred cccEEEEecCceeEe-cCHHHH
Confidence 999999999998654 444433
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=342.85 Aligned_cols=209 Identities=22% Similarity=0.284 Sum_probs=169.9
Q ss_pred CccEEEEeEEEEeCC---eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccc
Q 008771 95 SSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~ 171 (554)
.++++++||++.|++ +++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|... ++.+.+.
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~---~i~~~~~ 95 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA---LIAISSG 95 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee---eEEeccc
Confidence 356999999999976 4699999999999999999999999999999999999999999999987542 3333445
Q ss_pred cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcc
Q 008771 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (554)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (554)
+.+..|+.+|+..... . .........+++..+++.+|+. .
T Consensus 96 l~~~lTV~EnL~l~~~---------------~------------------------~~~~~~e~~e~i~elLe~lgL~-~ 135 (549)
T PRK13545 96 LNGQLTGIENIELKGL---------------M------------------------MGLTKEKIKEIIPEIIEFADIG-K 135 (549)
T ss_pred cCCCCcHHHHHHhhhh---------------h------------------------cCCCHHHHHHHHHHHHHHcCCh-h
Confidence 5566799998753110 0 0001112234566778888885 4
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcceEEE
Q 008771 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVE 328 (554)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~~~d~i~~ 328 (554)
..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+ +.|.|||+||||++++..+||+|++
T Consensus 136 ~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIiv 215 (549)
T PRK13545 136 FIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALW 215 (549)
T ss_pred HhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEE
Confidence 5688899999999999999999999999999999999999999998888774 3589999999999999999999999
Q ss_pred eeCCeeeeccCChhHHHHH
Q 008771 329 TEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 329 l~~g~~~~~~G~~~~~~~~ 347 (554)
|++|++. +.|+.+++...
T Consensus 216 L~~GkIv-~~G~~~el~~~ 233 (549)
T PRK13545 216 LHYGQVK-EYGDIKEVVDH 233 (549)
T ss_pred EECCEEE-EECCHHHHHhh
Confidence 9999874 45666555444
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=358.55 Aligned_cols=206 Identities=19% Similarity=0.266 Sum_probs=170.4
Q ss_pred ccEEEEeEEEEe---CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-CceeEEEcCCC-----------
Q 008771 96 SGVKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKAKSN----------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y---~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-~~G~I~~~~~~----------- 160 (554)
.+|+++|++++| +++.+|+|+||+|.+||+++|+|+||||||||+|+|+|+++| ++|+|.++|.+
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 469999999999 345799999999999999999999999999999999999985 89999998732
Q ss_pred ceEEEEeccc---ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 MKIAFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ~~i~~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..|+|++|++ .+++..||.+|+........ .. .........+.
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~-------------~~---------------------~~~~~~~~~~~ 381 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSF-------------CF---------------------KMRIDAAAELQ 381 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhh-------------cc---------------------CCcCCHHHHHH
Confidence 2489999996 46778899999853210000 00 00001112245
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEec
Q 008771 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISH 314 (554)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisH 314 (554)
++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++++ +.|.|||+|||
T Consensus 382 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsH 461 (500)
T TIGR02633 382 IIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSS 461 (500)
T ss_pred HHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECC
Confidence 678889999996445789999999999999999999999999999999999999999998887653 46899999999
Q ss_pred CHHHHHhhcceEEEeeCCeee
Q 008771 315 DRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~ 335 (554)
|++++.++||+|++|++|++.
T Consensus 462 d~~~~~~~~d~v~~l~~G~i~ 482 (500)
T TIGR02633 462 ELAEVLGLSDRVLVIGEGKLK 482 (500)
T ss_pred CHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999874
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=291.24 Aligned_cols=208 Identities=26% Similarity=0.409 Sum_probs=180.3
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------------- 160 (554)
.|+++|+++.||...+|-||+|+-++||.+.|+||+|+|||||+|.|+=+.-|.+|+..+.+..
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999999999999999886532
Q ss_pred ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 161 ~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
..+|+|||...+.+.+||.+|+..+...- ..+..++...++.
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv--------------------------------------~gl~~~qa~~~a~ 123 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRV--------------------------------------LGLSKDQALARAE 123 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHH--------------------------------------hCCCHHHHHHHHH
Confidence 25999999999999999999986542110 1223344567788
Q ss_pred HHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHH
Q 008771 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRA 317 (554)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~ 317 (554)
++|+.+.|. +..|+.|-.|||||+|||+|||||+++|++|++||||++|||+-...+.++++ ..|.|-+||||..+
T Consensus 124 ellkrlrl~-~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~ 202 (242)
T COG4161 124 KLLKRLRLK-PYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE 202 (242)
T ss_pred HHHHHhccc-cccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh
Confidence 899999986 67899999999999999999999999999999999999999998888777765 46999999999999
Q ss_pred HHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 318 FLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
++..++.+|+.|++|+++ -.|+.+-|
T Consensus 203 va~k~as~vvyme~g~iv-e~g~a~~f 228 (242)
T COG4161 203 VARKTASRVVYMENGHIV-EQGDASCF 228 (242)
T ss_pred HHHhhhhheEeeecCeeE-eecchhhc
Confidence 999999999999999985 44555444
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=320.08 Aligned_cols=194 Identities=21% Similarity=0.310 Sum_probs=159.0
Q ss_pred eEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC----CceeEEEcCCC--------ceEEEEecccc--cccCcc
Q 008771 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP----DSGNVIKAKSN--------MKIAFLSQEFE--VSMSRT 177 (554)
Q Consensus 112 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p----~~G~I~~~~~~--------~~i~~v~Q~~~--~~~~~t 177 (554)
+|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.+ ..|+|++|++. +++..|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57999999999999999999999999999999999999 89999998843 36999999985 334578
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc--cccCC
Q 008771 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA--DDGDR 255 (554)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~--~~~~~ 255 (554)
+.+++...... . .........++.++++.+|+.. ...++
T Consensus 81 ~~~~~~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 121 (230)
T TIGR02770 81 MGNHAIETLRS---------------L------------------------GKLSKQARALILEALEAVGLPDPEEVLKK 121 (230)
T ss_pred HHHHHHHHHHH---------------c------------------------CccHHHHHHHHHHHHHHcCCCchHHHHhC
Confidence 88876422100 0 0000112345778889999863 45688
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceEEEeeC
Q 008771 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEM 331 (554)
Q Consensus 256 ~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i~~l~~ 331 (554)
++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|++ .+.|||++|||++++..+||+|++|++
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 201 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDD 201 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 8999999999999999999999999999999999999999988887753 478999999999999999999999999
Q ss_pred CeeeeccCChhHHH
Q 008771 332 GVSRTYEGNYSQYV 345 (554)
Q Consensus 332 g~~~~~~G~~~~~~ 345 (554)
|++. ..|..+++.
T Consensus 202 G~i~-~~~~~~~~~ 214 (230)
T TIGR02770 202 GRIV-ERGTVKEIF 214 (230)
T ss_pred CEEE-EeCCHHHHH
Confidence 9974 456655543
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=306.71 Aligned_cols=157 Identities=30% Similarity=0.541 Sum_probs=139.6
Q ss_pred EEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEE
Q 008771 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (554)
Q Consensus 98 i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~ 165 (554)
|+++|++++|++ .++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 478999999975 569999999999999999999999999999999999999999999998743 25899
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.+++ .|+.+| +
T Consensus 81 ~~q~~~~~~-~tv~~~-------------------------------------------------------------l-- 96 (173)
T cd03246 81 LPQDDELFS-GSIAEN-------------------------------------------------------------I-- 96 (173)
T ss_pred ECCCCcccc-CcHHHH-------------------------------------------------------------C--
Confidence 999986654 365432 0
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~ 322 (554)
|||||+||++|||||+.+|++|||||||++||+.++.++.+.|++ .|.|+|++|||++++. +
T Consensus 97 --------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~ 161 (173)
T cd03246 97 --------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-S 161 (173)
T ss_pred --------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h
Confidence 999999999999999999999999999999999999999888743 5789999999999995 7
Q ss_pred cceEEEeeCCe
Q 008771 323 CTKIVETEMGV 333 (554)
Q Consensus 323 ~d~i~~l~~g~ 333 (554)
||+|++|++|+
T Consensus 162 ~d~v~~l~~G~ 172 (173)
T cd03246 162 ADRILVLEDGR 172 (173)
T ss_pred CCEEEEEECCC
Confidence 99999999885
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=311.19 Aligned_cols=173 Identities=32% Similarity=0.525 Sum_probs=142.7
Q ss_pred EEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccH
Q 008771 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178 (554)
Q Consensus 99 ~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv 178 (554)
+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+.. ....
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~------------~~~~ 68 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLA------------SLSP 68 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC------------cCCH
Confidence 4789999998888999999999999999999999999999999999999999999999864220 0011
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCC
Q 008771 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (554)
Q Consensus 179 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~ 258 (554)
.. +... ++ .+..+++.+|+. +..++.+.
T Consensus 69 ~~-~~~~---------------------------i~-----------------------~~~q~l~~~gl~-~~~~~~~~ 96 (180)
T cd03214 69 KE-LARK---------------------------IA-----------------------YVPQALELLGLA-HLADRPFN 96 (180)
T ss_pred HH-HHHH---------------------------Hh-----------------------HHHHHHHHcCCH-hHhcCCcc
Confidence 00 0000 00 000156667775 34577889
Q ss_pred CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---C-CCeEEEEecCHHHHHhhcceEEEeeCCee
Q 008771 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (554)
Q Consensus 259 ~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~-g~tvIiisHd~~~l~~~~d~i~~l~~g~~ 334 (554)
+|||||+||++|||||+.+|++|||||||++||+.+++.+.+.+++ . +.|+|++|||++++.++||++++|++|++
T Consensus 97 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i 176 (180)
T cd03214 97 ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRI 176 (180)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999888753 2 78999999999999999999999999986
Q ss_pred e
Q 008771 335 R 335 (554)
Q Consensus 335 ~ 335 (554)
.
T Consensus 177 ~ 177 (180)
T cd03214 177 V 177 (180)
T ss_pred E
Confidence 4
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=310.02 Aligned_cols=170 Identities=29% Similarity=0.387 Sum_probs=151.2
Q ss_pred cEEEEeEEEEeCC------eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCC--CCCceeEEEcCCC-------c
Q 008771 97 GVKLENISKSYKG------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN-------M 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~------~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p~~G~I~~~~~~-------~ 161 (554)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|.+ .
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 3899999999975 67999999999999999999999999999999999999 9999999998754 3
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
.++|++|++.+++..|+.+|+.... .
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~---------------------------------------------------~--- 108 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAA---------------------------------------------------K--- 108 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHH---------------------------------------------------H---
Confidence 5999999998878889998863110 0
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHH-
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA- 317 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~- 317 (554)
..+|||||+||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|+|++|||+.
T Consensus 109 ---------------~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 173 (194)
T cd03213 109 ---------------LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSS 173 (194)
T ss_pred ---------------hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchH
Confidence 017999999999999999999999999999999999999999887753 4889999999996
Q ss_pred HHHhhcceEEEeeCCeee
Q 008771 318 FLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~ 335 (554)
++..+||+|++|++|++.
T Consensus 174 ~~~~~~d~v~~l~~G~i~ 191 (194)
T cd03213 174 EIFELFDKLLLLSQGRVI 191 (194)
T ss_pred HHHHhcCEEEEEeCCEEE
Confidence 788899999999999874
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=309.33 Aligned_cols=170 Identities=24% Similarity=0.320 Sum_probs=149.9
Q ss_pred cEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCC--CCCceeEEEcCCC------ceEE
Q 008771 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN------MKIA 164 (554)
Q Consensus 97 ~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p~~G~I~~~~~~------~~i~ 164 (554)
.|+++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|.+ ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 5899999999974 67999999999999999999999999999999999986 4899999998754 2699
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|++|++.+++..|+.+|+.... . +
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~---------------------------------------------------~----~- 106 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSA---------------------------------------------------L----L- 106 (192)
T ss_pred EecccCccccCCcHHHHHHHHH---------------------------------------------------H----H-
Confidence 9999998888889999874210 0 0
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHH-HHH
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA-FLD 320 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~-~l~ 320 (554)
.+|||||+||++|||||+.+|++|||||||++||+.++.++.+.+++ .+.|+|+||||++ .+.
T Consensus 107 -------------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~ 173 (192)
T cd03232 107 -------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIF 173 (192)
T ss_pred -------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHH
Confidence 07999999999999999999999999999999999999999888753 4899999999998 477
Q ss_pred hhcceEEEeeC-Ceee
Q 008771 321 QLCTKIVETEM-GVSR 335 (554)
Q Consensus 321 ~~~d~i~~l~~-g~~~ 335 (554)
.+||+|++|++ |++.
T Consensus 174 ~~~d~i~~l~~~g~i~ 189 (192)
T cd03232 174 EKFDRLLLLKRGGKTV 189 (192)
T ss_pred hhCCEEEEEcCCCeEE
Confidence 89999999998 8864
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=312.29 Aligned_cols=170 Identities=27% Similarity=0.389 Sum_probs=147.8
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCC--CCCCceeEEEcCCC-----------ceEE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~--~~p~~G~I~~~~~~-----------~~i~ 164 (554)
|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+ ++|++|+|.++|.+ ..++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIF 80 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEE
Confidence 4789999999988899999999999999999999999999999999999 58999999998742 1399
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|+||++.+++..++.+++
T Consensus 81 ~v~q~~~~~~~~~~~~~l-------------------------------------------------------------- 98 (200)
T cd03217 81 LAFQYPPEIPGVKNADFL-------------------------------------------------------------- 98 (200)
T ss_pred EeecChhhccCccHHHHH--------------------------------------------------------------
Confidence 999998776666654332
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHh
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~ 321 (554)
+....+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|++ .+.|+|++||+++++..
T Consensus 99 ---------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 99 ---------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred ---------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 011247999999999999999999999999999999999999999888753 47899999999999988
Q ss_pred -hcceEEEeeCCeeeeccC
Q 008771 322 -LCTKIVETEMGVSRTYEG 339 (554)
Q Consensus 322 -~~d~i~~l~~g~~~~~~G 339 (554)
+||+|++|++|++. ..|
T Consensus 170 ~~~d~i~~l~~G~i~-~~~ 187 (200)
T cd03217 170 IKPDRVHVLYDGRIV-KSG 187 (200)
T ss_pred hhCCEEEEEECCEEE-EEc
Confidence 79999999999874 334
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=323.23 Aligned_cols=199 Identities=29% Similarity=0.376 Sum_probs=165.0
Q ss_pred EEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEec
Q 008771 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQ 168 (554)
Q Consensus 99 ~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q 168 (554)
+++||++. .+|+|+||+|++|++++|+|+||||||||+++|+|+++ .+|+|.++|.+. .++|+||
T Consensus 2 ~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 76 (248)
T PRK03695 2 QLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQ 76 (248)
T ss_pred cccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecc
Confidence 57788875 38999999999999999999999999999999999986 499999987532 4899999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++..|+.+|+...... ........+++.++++.+|+
T Consensus 77 ~~~~~~~~tv~~nl~~~~~~----------------------------------------~~~~~~~~~~~~~~l~~~~l 116 (248)
T PRK03695 77 QQTPPFAMPVFQYLTLHQPD----------------------------------------KTRTEAVASALNEVAEALGL 116 (248)
T ss_pred cCccCCCccHHHHHHhcCcc----------------------------------------CCCcHHHHHHHHHHHHHcCC
Confidence 98877888999987532100 00011224567788888998
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHcc-------CCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQ-------DPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~-------~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~ 318 (554)
. ...++++.+||||||||++||+||+. +|++|||||||++||+.++..+.++|++ .+.|||+||||+++
T Consensus 117 ~-~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~ 195 (248)
T PRK03695 117 D-DKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNH 195 (248)
T ss_pred H-hHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 6 45688899999999999999999997 6799999999999999999999888753 47899999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhHH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+..+||+|++|++|++. ..|..+++
T Consensus 196 ~~~~~d~i~~l~~G~i~-~~g~~~~~ 220 (248)
T PRK03695 196 TLRHADRVWLLKQGKLL-ASGRRDEV 220 (248)
T ss_pred HHHhCCEEEEEECCEEE-EECCHHHH
Confidence 99999999999999974 55665543
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=301.15 Aligned_cols=209 Identities=25% Similarity=0.344 Sum_probs=172.7
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v 166 (554)
+|+++|++++..++.+|+++||++.+||+++|+||||||||||||.|+|...|++|++.++|.+. .-+.+
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 48999999999999999999999999999999999999999999999999999999999998653 46899
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcc--cHHHHHHHHhh
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD--TLDAKVSKLMP 244 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ 244 (554)
||+..+-|..||.|.+..+.... ..+.. +..+.++.+|.
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~---------------------------------------~~g~~~~e~~~i~~~ala 121 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPH---------------------------------------RSGREPEEDERIAAQALA 121 (259)
T ss_pred ccCcccccceEHHHHHHhccccc---------------------------------------ccCCCchhhHHHHHHHHH
Confidence 99999989999999875432100 00111 22233566677
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHcc------CCCeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecC
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQ------DPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHD 315 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~------~p~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd 315 (554)
..++. .+..|...+|||||||||.|||+|++ ++++|+||||||+||........+.. ...|..|+.|-||
T Consensus 122 ~~d~~-~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHD 200 (259)
T COG4559 122 ATDLS-GLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHD 200 (259)
T ss_pred HcChh-hhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 77765 45678888999999999999999986 44589999999999998877766654 3468999999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+++...+||||++|.+|++ +..|...+.+.
T Consensus 201 LNLAA~YaDrivll~~Grv-~a~g~p~~vlt 230 (259)
T COG4559 201 LNLAAQYADRIVLLHQGRV-IASGSPQDVLT 230 (259)
T ss_pred chHHHHhhheeeeeeCCeE-eecCCHHHhcC
Confidence 9999999999999999997 56777666544
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=354.32 Aligned_cols=252 Identities=25% Similarity=0.356 Sum_probs=185.1
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~ 125 (554)
.+......+..++.+..+.+|+.+..+.+.+... ... .......|+++|++|+|++ +++|+|+||+|++|++
T Consensus 273 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~---~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~ 346 (544)
T TIGR01842 273 PIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AMP---LPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEA 346 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CCC---CCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCE
Confidence 4444555556678888888888766543322110 000 0112345999999999964 5799999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
++|+|+||||||||+++|+|+++|++|+|.++|.+. .|+|+||++.++. .|++||+...-.+ ..
T Consensus 347 ~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~~-~~---- 420 (544)
T TIGR01842 347 LAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFP-GTVAENIARFGEN-AD---- 420 (544)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCccccc-ccHHHHHhccCCC-CC----
Confidence 999999999999999999999999999999998542 5999999998865 5999998632100 00
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCccccCCCCCCCChhHHHHHHHHHH
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKI 273 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAra 273 (554)
.+++... ++ ...+.+.++.+ |++. .......+||||||||++||||
T Consensus 421 ~~~~~~~------------------------~~-------~~~~~~~i~~l~~gl~t-~~~~~g~~LSgGq~qrl~lARa 468 (544)
T TIGR01842 421 PEKIIEA------------------------AK-------LAGVHELILRLPDGYDT-VIGPGGATLSGGQRQRIALARA 468 (544)
T ss_pred HHHHHHH------------------------HH-------HhChHHHHHhCcccccc-ccCCCcCCCCHHHHHHHHHHHH
Confidence 0000000 00 00122233333 4432 2344567899999999999999
Q ss_pred HccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 274 L~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|+.+|++|||||||++||+.+.+.+.+.|.+ .++|+|+|||+++.+. .||+|++|++|++ ...|+++++.
T Consensus 469 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~-~~d~i~~l~~G~i-~~~g~~~~l~ 541 (544)
T TIGR01842 469 LYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG-CVDKILVLQDGRI-ARFGERDEVL 541 (544)
T ss_pred HhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEE-EeeCCHHHHh
Confidence 9999999999999999999999999888754 4789999999999875 6999999999987 4667776543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=365.13 Aligned_cols=255 Identities=24% Similarity=0.394 Sum_probs=194.6
Q ss_pred HhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCCe---eeEEceeEEEECCCE
Q 008771 49 VSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV---TVLKDVTWEVKKGEK 125 (554)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~~---~~l~~isl~i~~Ge~ 125 (554)
++......-.+.+|+.++.++|...+.+++..... ..........+.|+++||+|+|+.+ ++|+|+||+|++|+.
T Consensus 941 ~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~--~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqT 1018 (1228)
T KOG0055|consen 941 LGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDS--TSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQT 1018 (1228)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCC--CCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCE
Confidence 34444445558888888998888877665332211 0110112345679999999999765 599999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHH----HHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKE----EME 191 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~----~~~ 191 (554)
+|||||+||||||.+.+|-.+|.|++|.|.+||.++ +||.|.|+|.+ |+.|++||+..+... +..
T Consensus 1019 vALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~L-F~~TIrENI~YG~~~vs~~eIi 1097 (1228)
T KOG0055|consen 1019 VALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVL-FNGTIRENIAYGSEEVSEEEII 1097 (1228)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchh-hcccHHHHHhccCCCCCHHHHH
Confidence 999999999999999999999999999999998764 59999999998 677999999866211 111
Q ss_pred HHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHH
Q 008771 192 IAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271 (554)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LA 271 (554)
.+.++..+ ...+..+-+ |++....++ -.+||||||||+|||
T Consensus 1098 ~Aak~ANa------------------------------------H~FI~sLP~--GyDT~vGer-G~QLSGGQKQRIAIA 1138 (1228)
T KOG0055|consen 1098 EAAKLANA------------------------------------HNFISSLPQ--GYDTRVGER-GVQLSGGQKQRIAIA 1138 (1228)
T ss_pred HHHHHhhh------------------------------------HHHHhcCcC--cccCccCcc-cCcCCchHHHHHHHH
Confidence 11111111 111111111 333333333 359999999999999
Q ss_pred HHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 272 raL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
||+++||+||||||.||+||.++.+.+.+.|.+ .|.|+|+|.|++..+.+ ||.|+++++|++ .-.|+.++.+..
T Consensus 1139 RAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~V-vE~GtH~~L~~~ 1214 (1228)
T KOG0055|consen 1139 RAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN-ADVIAVLKNGKV-VEQGTHDELLAK 1214 (1228)
T ss_pred HHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc-CCEEEEEECCEE-EecccHHHHHhC
Confidence 999999999999999999999999999999964 58999999999999975 999999999998 456888877663
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=356.07 Aligned_cols=259 Identities=20% Similarity=0.322 Sum_probs=185.5
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC-eeeEEceeEEEECCCEE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKV 126 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~ 126 (554)
.+......+...+.+...++++.+..+.+.......... ........|+++|++|+|++ +++|+|+||+|++|+++
T Consensus 288 ~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~ 364 (585)
T TIGR01192 288 RLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAP---ELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTV 364 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCC---CCCCCCCeEEEEEEEEECCCCCccccceeEEEcCCCEE
Confidence 333444445567777788888776654432111100000 01112345999999999975 57999999999999999
Q ss_pred EEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHH
Q 008771 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (554)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (554)
+|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++.++ ..|++||+..+... .. .
T Consensus 365 ~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf-~~ti~~Ni~~~~~~-~~----~ 438 (585)
T TIGR01192 365 AIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLF-NRSIRENIRLGREG-AT----D 438 (585)
T ss_pred EEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccC-cccHHHHHhcCCCC-CC----H
Confidence 99999999999999999999999999999988542 599999999875 57999999643110 00 0
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHcc
Q 008771 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (554)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 276 (554)
+++...+ +. ......+.++.. |++. ........||||||||++|||||+.
T Consensus 439 ~~~~~a~------------------------~~---~~~~~~i~~l~~--g~~t-~~~~~~~~LSgGq~qrl~lARall~ 488 (585)
T TIGR01192 439 EEVYEAA------------------------KA---AAAHDFILKRSN--GYDT-LVGERGNRLSGGERQRLAIARAILK 488 (585)
T ss_pred HHHHHHH------------------------HH---hCcHHHHHhccc--cccc-hhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 0000000 00 001111111111 3322 2344567899999999999999999
Q ss_pred CCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 277 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
+|++|||||||++||+.+.+.+.+.|.+ .+.|+|+|||+++.+. .||+|++|++|++. ..|+++++...
T Consensus 489 ~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~~ 559 (585)
T TIGR01192 489 NAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVR-NADLVLFLDQGRLI-EKGSFQELIQK 559 (585)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHH-cCCEEEEEECCEEE-EECCHHHHHHC
Confidence 9999999999999999999999888754 4899999999999996 59999999999974 56887766543
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=320.19 Aligned_cols=214 Identities=19% Similarity=0.279 Sum_probs=167.4
Q ss_pred CCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------
Q 008771 92 SSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------- 160 (554)
Q Consensus 92 ~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------- 160 (554)
....+.|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 14 ~~~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 14 VGLGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred ccCCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 344567999999999976 579999999999999999999999999999999999999999999998743
Q ss_pred -ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 161 -~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
..|+|++|++.+++ .|+.+|+...... . ...+.. .+. ...+
T Consensus 94 ~~~i~~v~q~~~l~~-~tv~~nl~~~~~~--~----~~~~~~--------------~l~-----------------~~~l 135 (257)
T cd03288 94 RSRLSIILQDPILFS-GSIRFNLDPECKC--T----DDRLWE--------------ALE-----------------IAQL 135 (257)
T ss_pred hhhEEEECCCCcccc-cHHHHhcCcCCCC--C----HHHHHH--------------HHH-----------------HhCc
Confidence 25999999997754 5998886321000 0 000000 000 0012
Q ss_pred HHHhhhc--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecC
Q 008771 240 SKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD 315 (554)
Q Consensus 240 ~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd 315 (554)
.++++.+ |++. ..++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+.+.+ .+.|+|++||+
T Consensus 136 ~~~~~~~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~ 214 (257)
T cd03288 136 KNMVKSLPGGLDA-VVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHR 214 (257)
T ss_pred HHHHhhcccccCc-EeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 2233333 4542 34567789999999999999999999999999999999999999999888754 48999999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
++.+.. ||+|++|++|++. ..|+.+++..
T Consensus 215 ~~~~~~-~dri~~l~~G~i~-~~g~~~~~~~ 243 (257)
T cd03288 215 VSTILD-ADLVLVLSRGILV-ECDTPENLLA 243 (257)
T ss_pred hHHHHh-CCEEEEEECCEEE-EeCCHHHHHh
Confidence 999986 9999999999974 5677665543
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=313.91 Aligned_cols=196 Identities=21% Similarity=0.350 Sum_probs=149.7
Q ss_pred EEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------ceE
Q 008771 99 KLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKI 163 (554)
Q Consensus 99 ~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~~i 163 (554)
.+.|+.++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.. ..+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 5789999997 4579999999999999999999999999999999999999999999998742 259
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+|++|++.++ ..|+.+|+........ ...... .+.++ +...+.. +
T Consensus 82 ~~~~q~~~~~-~~t~~~nl~~~~~~~~------~~~~~~------------------------~~~~~---l~~~~~~-~ 126 (218)
T cd03290 82 AYAAQKPWLL-NATVEENITFGSPFNK------QRYKAV------------------------TDACS---LQPDIDL-L 126 (218)
T ss_pred EEEcCCCccc-cccHHHHHhhcCcCCH------HHHHHH------------------------HHHhC---cHHHHHh-C
Confidence 9999999775 6799999854210000 000000 00000 0000000 0
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHH-----HHccCCCeEEEEecCHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG-----YLGKQDVPMVIISHDRAF 318 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~-----~l~~~g~tvIiisHd~~~ 318 (554)
..|+. ...++++..|||||+|||+|||||+.+|++|||||||++||+.+++.+.+ .+++.+.|+|++||++++
T Consensus 127 -~~~~~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~ 204 (218)
T cd03290 127 -PFGDQ-TEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY 204 (218)
T ss_pred -cCccc-cCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH
Confidence 01221 22356788999999999999999999999999999999999999887765 344568999999999999
Q ss_pred HHhhcceEEEeeCC
Q 008771 319 LDQLCTKIVETEMG 332 (554)
Q Consensus 319 l~~~~d~i~~l~~g 332 (554)
+. .||++++|++|
T Consensus 205 ~~-~~d~i~~l~~G 217 (218)
T cd03290 205 LP-HADWIIAMKDG 217 (218)
T ss_pred Hh-hCCEEEEecCC
Confidence 86 69999999887
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=358.32 Aligned_cols=255 Identities=23% Similarity=0.371 Sum_probs=184.7
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~ 125 (554)
.+......+.+++.++...+|+.+....+.+.... ..+ .......|+++||+|+|++ +++|+|+||+|++||+
T Consensus 286 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~----~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~ 360 (571)
T TIGR02203 286 PLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG-TRA----IERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGET 360 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCC----CCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCE
Confidence 45555555667788888888876654433221110 000 0112245999999999964 5799999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
++|+|+||||||||+++|+|+++|++|+|.++|.+. .|+|+||++.+ ++.|++||+...-...
T Consensus 361 v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l-f~~Ti~~Ni~~~~~~~------ 433 (571)
T TIGR02203 361 VALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVL-FNDTIANNIAYGRTEQ------ 433 (571)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCccc-ccccHHHHHhcCCCCC------
Confidence 999999999999999999999999999999998542 59999999987 5679999986431000
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCccccCCCCCCCChhHHHHHHHHHH
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKI 273 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAra 273 (554)
.++ +.+. ..++.. .+.+.+..+ |++... ...-..||||||||++||||
T Consensus 434 -----------~~~-~~i~----------~~l~~~-------~l~~~i~~lp~gldt~i-~~~g~~LSgGqrQRiaLARa 483 (571)
T TIGR02203 434 -----------ADR-AEIE----------RALAAA-------YAQDFVDKLPLGLDTPI-GENGVLLSGGQRQRLAIARA 483 (571)
T ss_pred -----------CCH-HHHH----------HHHHHc-------ChHHHHHhCcCccccee-cCCCCcCCHHHHHHHHHHHH
Confidence 000 0000 000000 111222222 333221 12235799999999999999
Q ss_pred HccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 274 L~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
++.+|++|||||||++||..+.+.+.+.|.+ .++|+|+|||+...+. .||+|++|++|++. ..|++++.+.
T Consensus 484 ll~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~-~~g~~~~l~~ 556 (571)
T TIGR02203 484 LLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE-KADRIVVMDDGRIV-ERGTHNELLA 556 (571)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHH-hCCEEEEEeCCEEE-eeCCHHHHHH
Confidence 9999999999999999999999999988865 4789999999998885 59999999999874 5677776654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=309.38 Aligned_cols=183 Identities=20% Similarity=0.270 Sum_probs=155.5
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc------eEEEEeccc
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------KIAFLSQEF 170 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------~i~~v~Q~~ 170 (554)
+|+++|++++|+++.+++ +||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++
T Consensus 1 ~l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNL 79 (195)
T ss_pred CeEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCc
Confidence 378999999998776776 9999999999999999999999999999999999999999998542 489999998
Q ss_pred ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc
Q 008771 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (554)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (554)
.+++..||.+|+...... .....++.++++.+|+.
T Consensus 80 ~~~~~~tv~~~l~~~~~~--------------------------------------------~~~~~~~~~~l~~~~l~- 114 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEI--------------------------------------------YNSAETLYAAIHYFKLH- 114 (195)
T ss_pred CCCccCCHHHHHHHHHHh--------------------------------------------cccHHHHHHHHHHcCCH-
Confidence 777889999998531100 00123456667778885
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcceE
Q 008771 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~~~d~i 326 (554)
...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++++.++++ +.+.|+|+||||++++.. +|.|
T Consensus 115 ~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 115 DLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred hhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch-hhee
Confidence 45688899999999999999999999999999999999999999999988874 468999999999999976 7765
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=301.95 Aligned_cols=157 Identities=32% Similarity=0.566 Sum_probs=138.4
Q ss_pred EEEEeEEEEeCCe--eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEE
Q 008771 98 VKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (554)
Q Consensus 98 i~~~~ls~~y~~~--~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~ 165 (554)
|+++|+++.|+++ .+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4789999999875 799999999999999999999999999999999999999999999987432 4889
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.++. .|+.|| +
T Consensus 81 ~~~~~~~~~-~t~~e~-------------------------------------------------------------l-- 96 (171)
T cd03228 81 VPQDPFLFS-GTIREN-------------------------------------------------------------I-- 96 (171)
T ss_pred EcCCchhcc-chHHHH-------------------------------------------------------------h--
Confidence 999875432 344321 0
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhc
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~ 323 (554)
|||||+|||+|||||+.+|++|||||||++||+.++..+.+++++ .+.|+|++|||++++.. |
T Consensus 97 --------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~ 161 (171)
T cd03228 97 --------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-A 161 (171)
T ss_pred --------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-C
Confidence 999999999999999999999999999999999999999888753 36899999999999987 9
Q ss_pred ceEEEeeCCe
Q 008771 324 TKIVETEMGV 333 (554)
Q Consensus 324 d~i~~l~~g~ 333 (554)
|++++|++|+
T Consensus 162 d~~~~l~~g~ 171 (171)
T cd03228 162 DRIIVLDDGR 171 (171)
T ss_pred CEEEEEcCCC
Confidence 9999998873
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=307.29 Aligned_cols=176 Identities=24% Similarity=0.271 Sum_probs=150.8
Q ss_pred cEEEEeEEEEeC----CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC---CCceeEEEcCCC---------
Q 008771 97 GVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE---PDSGNVIKAKSN--------- 160 (554)
Q Consensus 97 ~i~~~~ls~~y~----~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~---p~~G~I~~~~~~--------- 160 (554)
.+.++||+|.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 478999999995 4579999999999999999999999999999999999999 899999998743
Q ss_pred ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 161 ~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
..++|++|++.+++..||.+|+.... ..
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~---------------------------------------------------~~- 110 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFAL---------------------------------------------------RC- 110 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhh---------------------------------------------------hh-
Confidence 25999999988888889999874210 00
Q ss_pred HHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEE-ecC
Q 008771 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII-SHD 315 (554)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIii-sHd 315 (554)
. .++.+..|||||+||++|||||+.+|++|||||||++||+.+++.+.+.+++ .+.|+|++ +|+
T Consensus 111 ---~--------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~ 179 (202)
T cd03233 111 ---K--------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQA 179 (202)
T ss_pred ---c--------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 0 2456789999999999999999999999999999999999999998887753 25666655 566
Q ss_pred HHHHHhhcceEEEeeCCeee
Q 008771 316 RAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~ 335 (554)
.+.+.++||+|++|++|++.
T Consensus 180 ~~~~~~~~d~i~~l~~G~i~ 199 (202)
T cd03233 180 SDEIYDLFDKVLVLYEGRQI 199 (202)
T ss_pred HHHHHHhCCeEEEEECCEEE
Confidence 78998999999999999874
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=318.97 Aligned_cols=178 Identities=26% Similarity=0.396 Sum_probs=148.6
Q ss_pred eeeEEceeEEEE-----CCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHH
Q 008771 110 VTVLKDVTWEVK-----KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMS 184 (554)
Q Consensus 110 ~~~l~~isl~i~-----~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~ 184 (554)
...+++++|++. +||+++|+|+||||||||+++|+|+++|++|+|.++|. .|+|++|++...+..||.+++..
T Consensus 7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~--~i~~~~q~~~~~~~~tv~e~l~~ 84 (246)
T cd03237 7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD--TVSYKPQYIKADYEGTVRDLLSS 84 (246)
T ss_pred ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc--eEEEecccccCCCCCCHHHHHHH
Confidence 346677777776 79999999999999999999999999999999999875 79999999887778899998742
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhH
Q 008771 185 AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264 (554)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq 264 (554)
.... .. .....+.++++.+|+. ...++++.+|||||
T Consensus 85 ~~~~-----------------------------------------~~--~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe 120 (246)
T cd03237 85 ITKD-----------------------------------------FY--THPYFKTEIAKPLQIE-QILDREVPELSGGE 120 (246)
T ss_pred Hhhh-----------------------------------------cc--ccHHHHHHHHHHcCCH-HHhhCChhhCCHHH
Confidence 1100 00 0012245567778886 45688899999999
Q ss_pred HHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 265 rqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
+|||+||+||+.+|++|||||||++||+.++..+.+.|++ .++|||+||||++++..+||+|++|+++.
T Consensus 121 ~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~ 193 (246)
T cd03237 121 LQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEP 193 (246)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999999999999999998887754 48999999999999999999999997653
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=297.56 Aligned_cols=158 Identities=28% Similarity=0.465 Sum_probs=133.3
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCcc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~t 177 (554)
|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+.. ..+
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~------------~~~ 68 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS------------FAS 68 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC------------cCC
Confidence 47899999999889999999999999999999999999999999999999999999999864210 001
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCC
Q 008771 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (554)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~ 257 (554)
..+.. -..+++ +
T Consensus 69 ~~~~~------------------------------------------------------------~~~i~~--------~ 80 (163)
T cd03216 69 PRDAR------------------------------------------------------------RAGIAM--------V 80 (163)
T ss_pred HHHHH------------------------------------------------------------hcCeEE--------E
Confidence 10000 000111 1
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceEEEeeCCee
Q 008771 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (554)
Q Consensus 258 ~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i~~l~~g~~ 334 (554)
.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+.+++ .+.|+|++|||++++.++||++++|++|++
T Consensus 81 ~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i 160 (163)
T cd03216 81 YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRV 160 (163)
T ss_pred EecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 23999999999999999999999999999999999999999888753 488999999999999999999999999986
Q ss_pred e
Q 008771 335 R 335 (554)
Q Consensus 335 ~ 335 (554)
.
T Consensus 161 ~ 161 (163)
T cd03216 161 V 161 (163)
T ss_pred E
Confidence 3
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=351.16 Aligned_cols=255 Identities=18% Similarity=0.245 Sum_probs=183.2
Q ss_pred hhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCEEE
Q 008771 50 SAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVG 127 (554)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~ 127 (554)
......+..++.+..+.+|+.+..+.+.+... .... .......|+++|++|+|++ .++|+|+||+|++|++++
T Consensus 271 ~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~---~~~~--~~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ 345 (569)
T PRK10789 271 LALAWMFNIVERGSAAYSRIRAMLAEAPVVKD---GSEP--VPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLG 345 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC---CCCC--CCCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEE
Confidence 33444455677777888887665543321110 0000 0112345999999999964 579999999999999999
Q ss_pred EECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHH
Q 008771 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLE 197 (554)
Q Consensus 128 lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~ 197 (554)
|+|+||||||||+++|+|+++|++|+|.++|.+. .|+|++|++.++ ..|++||+..+..+. . .+
T Consensus 346 ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf-~~ti~~Ni~~~~~~~-~----~~ 419 (569)
T PRK10789 346 ICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLF-SDTVANNIALGRPDA-T----QQ 419 (569)
T ss_pred EECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeec-cccHHHHHhcCCCCC-C----HH
Confidence 9999999999999999999999999999998642 599999999885 469999986431100 0 00
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccC
Q 008771 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277 (554)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 277 (554)
.+...+ +.. .....+.++- .|++. ..+.....||||||||++|||||+.+
T Consensus 420 ~~~~~~------------------------~~~---~l~~~i~~lp--~gl~t-~~~~~g~~LSgGq~qRi~lARall~~ 469 (569)
T PRK10789 420 EIEHVA------------------------RLA---SVHDDILRLP--QGYDT-EVGERGVMLSGGQKQRISIARALLLN 469 (569)
T ss_pred HHHHHH------------------------HHc---CCHHHHHhCc--Ccccc-eecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 000000 000 0011111111 13322 22344568999999999999999999
Q ss_pred CCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 278 PDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 278 p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
|++|||||||++||+.+.+.+.+.|++ .++|+|+|||+++.+. .||+|++|++|++. ..|++++....
T Consensus 470 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~~ 539 (569)
T PRK10789 470 AEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT-EASEILVMQHGHIA-QRGNHDQLAQQ 539 (569)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH-cCCEEEEEeCCEEE-EecCHHHHHHc
Confidence 999999999999999999999888864 5899999999999986 59999999999974 66887766543
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=353.09 Aligned_cols=257 Identities=22% Similarity=0.343 Sum_probs=184.1
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC---eeeEEceeEEEECCC
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGE 124 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge 124 (554)
.+......+..++.++.+.+|+.+..+.+.+.... ......+......|+++||+|+|++ +++|+|+||+|++||
T Consensus 290 pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge 367 (576)
T TIGR02204 290 SIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP--AHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGE 367 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC--CCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCC
Confidence 34445555566788888888886654432211100 0000000112245999999999964 569999999999999
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEEEecccccccCccHHHHHHHhhHHHHHHHH
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 194 (554)
+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|+||++.+ ++.|++||+..+..+. .
T Consensus 368 ~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~l-f~~Ti~~Ni~~~~~~~-~--- 442 (576)
T TIGR02204 368 TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVL-FAASVMENIRYGRPDA-T--- 442 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCcc-ccccHHHHHhcCCCCC-C---
Confidence 999999999999999999999999999999999854 259999999987 5679999996431100 0
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCccccCCCCCCCChhHHHHHHHHH
Q 008771 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGK 272 (554)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAr 272 (554)
.+++... ++..+ +.+.++.+ |++.. .......||||||||++|||
T Consensus 443 -~~~~~~~------------------------l~~~~-------l~~~i~~l~~gl~t~-i~~~g~~LSgGq~Qrl~laR 489 (576)
T TIGR02204 443 -DEEVEAA------------------------ARAAH-------AHEFISALPEGYDTY-LGERGVTLSGGQRQRIAIAR 489 (576)
T ss_pred -HHHHHHH------------------------HHHcC-------cHHHHHhCCCCCCce-eCCCCCcCCHHHHHHHHHHH
Confidence 0000000 00000 11122222 33322 22335689999999999999
Q ss_pred HHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 273 ILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 273 aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
|++.+|++|||||||++||+.+.+.+.+.|++ .++|+|+|||+++.+. .||+|++|++|++. ..|++++...
T Consensus 490 al~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~-~~g~~~~l~~ 563 (576)
T TIGR02204 490 AILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL-KADRIVVMDQGRIV-AQGTHAELIA 563 (576)
T ss_pred HHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEE-eeecHHHHHH
Confidence 99999999999999999999999988887764 4799999999998886 59999999999975 4577766543
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=360.23 Aligned_cols=256 Identities=21% Similarity=0.359 Sum_probs=186.7
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~ 125 (554)
.+......+..++.++.+++|+.+..+.+.+.... ... ........|+++||+|+|++ +++|+|+||+|++|++
T Consensus 410 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~~~---~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~ 485 (694)
T TIGR01846 410 PVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-GLA---ALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEF 485 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-CCC---CCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCE
Confidence 34444445556777777788776654433221110 000 01122346999999999953 4699999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
++|+|+||||||||+++|+|+++|++|+|.++|.+. .|+||+|++.+ +..|++||+...... ..
T Consensus 486 vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~l-f~~ti~eNi~~~~~~-~~---- 559 (694)
T TIGR01846 486 IGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVL-FSRSIRDNIALCNPG-AP---- 559 (694)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCee-hhhhHHHHHhcCCCC-CC----
Confidence 999999999999999999999999999999998653 49999999887 457999999643110 00
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCccccCCCCCCCChhHHHHHHHHHH
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKI 273 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAra 273 (554)
.+.+.. .++.. .+.+.+..+ |++.. ......+||||||||++||||
T Consensus 560 ~~~i~~------------------------a~~~~-------~l~~~i~~lp~gl~t~-i~~~g~~LSgGq~qri~lARa 607 (694)
T TIGR01846 560 FEHVIH------------------------AAKLA-------GAHDFISELPQGYNTE-VGEKGANLSGGQRQRIAIARA 607 (694)
T ss_pred HHHHHH------------------------HHHHc-------ChHHHHHhCcCccCcE-ecCCCCCCCHHHHHHHHHHHH
Confidence 000000 00000 112222222 44432 233457899999999999999
Q ss_pred HccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 274 L~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
|+.+|++|||||||++||+.+.+.+.+.|++ .+.|+|+|||+++.+.. ||+|++|++|++ ...|++++.+..
T Consensus 608 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i-~~~g~~~~l~~~ 681 (694)
T TIGR01846 608 LVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQI-AESGRHEELLAL 681 (694)
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh-CCEEEEEeCCEE-EEeCCHHHHHHc
Confidence 9999999999999999999999999988865 47899999999999965 999999999997 467888876654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=308.19 Aligned_cols=172 Identities=26% Similarity=0.407 Sum_probs=142.2
Q ss_pred eCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------------ceEEEEecccc-cc
Q 008771 107 YKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIAFLSQEFE-VS 173 (554)
Q Consensus 107 y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------------~~i~~v~Q~~~-~~ 173 (554)
|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|++|++. ..
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 456779999999999999999999999999999999999999999999998743 14899999974 33
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcccc
Q 008771 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (554)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (554)
+..||.+|+...... .........+++.++++.+|+. ...
T Consensus 82 ~~~tv~~nl~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~~l~-~~~ 121 (190)
T TIGR01166 82 FAADVDQDVAFGPLN---------------------------------------LGLSEAEVERRVREALTAVGAS-GLR 121 (190)
T ss_pred ccccHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHHcCch-hhh
Confidence 457999987532100 0001122345677888889986 457
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 008771 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (554)
Q Consensus 254 ~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~ 318 (554)
++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|++ .|.|||+||||+++
T Consensus 122 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 122 ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 889999999999999999999999999999999999999999999888753 48899999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=353.01 Aligned_cols=188 Identities=27% Similarity=0.393 Sum_probs=164.6
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccccc
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (554)
.++|+++|+++.|++. .|+++||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++ ..|+|+||++.+++
T Consensus 338 ~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~~i~y~~Q~~~~~~ 413 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---LKISYKPQYIKPDY 413 (590)
T ss_pred ceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---eeEEEecccccCCC
Confidence 4579999999999875 4999999999999999999999999999999999999999999986 47999999988878
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccC
Q 008771 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (554)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (554)
..||.+++..... ... ....+.++++.+|+. ...+
T Consensus 414 ~~tv~e~l~~~~~-----------------------------------------~~~---~~~~~~~~L~~l~l~-~~~~ 448 (590)
T PRK13409 414 DGTVEDLLRSITD-----------------------------------------DLG---SSYYKSEIIKPLQLE-RLLD 448 (590)
T ss_pred CCcHHHHHHHHhh-----------------------------------------hcC---hHHHHHHHHHHCCCH-HHHh
Confidence 8999998753210 000 012356778889996 5679
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceEEEee
Q 008771 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 255 ~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i~~l~ 330 (554)
+++.+|||||||||+||+||+.+|++|||||||++||+.++..+.+.|++ .|+|+|+||||++++..+||+|++|+
T Consensus 449 ~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~ 528 (590)
T PRK13409 449 KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE 528 (590)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc
Confidence 99999999999999999999999999999999999999999999888753 48999999999999999999999997
Q ss_pred C
Q 008771 331 M 331 (554)
Q Consensus 331 ~ 331 (554)
+
T Consensus 529 ~ 529 (590)
T PRK13409 529 G 529 (590)
T ss_pred C
Confidence 5
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=351.25 Aligned_cols=206 Identities=19% Similarity=0.338 Sum_probs=167.3
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------eE
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KI 163 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-----------~i 163 (554)
+++|+++|+++.| +++|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.++|.+. .+
T Consensus 248 ~~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 248 EVILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred CcEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence 3579999999874 4699999999999999999999999999999999999999999999987432 28
Q ss_pred EEEecccc---cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 164 AFLSQEFE---VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 164 ~~v~Q~~~---~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
+|++|++. +++..|+.+|..... ... ... ..........+..+.
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~---~~~----------~~~--------------------~~~~~~~~~~~~~~~ 372 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISN---IRN----------YKN--------------------KVGLLDNSRMKSDTQ 372 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhh---hhh----------hcc--------------------cccccCcHHHHHHHH
Confidence 99999853 556778777632100 000 000 000001122345677
Q ss_pred HHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHH
Q 008771 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRA 317 (554)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd~~ 317 (554)
++++.+++.....++++.+|||||||||+|||||+.+|+||||||||+|||+.+++.+.+.+ .++|.|||+||||++
T Consensus 373 ~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~ 452 (491)
T PRK10982 373 WVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP 452 (491)
T ss_pred HHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH
Confidence 88899998644579999999999999999999999999999999999999999999998876 456999999999999
Q ss_pred HHHhhcceEEEeeCCeee
Q 008771 318 FLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~ 335 (554)
++..+||++++|++|++.
T Consensus 453 ~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 453 ELLGITDRILVMSNGLVA 470 (491)
T ss_pred HHHhhCCEEEEEECCEEE
Confidence 999999999999999975
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=351.85 Aligned_cols=212 Identities=20% Similarity=0.321 Sum_probs=171.1
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~ 164 (554)
..++++|+++. .+|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+ ..|+
T Consensus 256 ~~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 331 (501)
T PRK11288 256 VRLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331 (501)
T ss_pred cEEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCE
Confidence 46899999842 58999999999999999999999999999999999999999999998742 2589
Q ss_pred EEecccc---cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 165 FLSQEFE---VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 165 ~v~Q~~~---~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
|++|++. +++..|+.+|+........ .. . + . ..........+.+
T Consensus 332 ~~~q~~~~~~~~~~~tv~e~l~~~~~~~~-------------~~----~---~-~------------~~~~~~~~~~~~~ 378 (501)
T PRK11288 332 LCPEDRKAEGIIPVHSVADNINISARRHH-------------LR----A---G-C------------LINNRWEAENADR 378 (501)
T ss_pred EcCcCHhhCCCcCCCCHHHHhccccchhh-------------cc----c---c-c------------ccChHHHHHHHHH
Confidence 9999974 6677899998753210000 00 0 0 0 0000112345778
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAF 318 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd~~~ 318 (554)
+++.+|+..+..++++.+|||||||||+||+||+.+|+||||||||+|||+.+++.+.++| .+.|.|||+||||+++
T Consensus 379 ~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~ 458 (501)
T PRK11288 379 FIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPE 458 (501)
T ss_pred HHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 8999999545679999999999999999999999999999999999999999999998876 4568999999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+..+||+|++|++|++. +.|..+++.
T Consensus 459 ~~~~~d~i~~l~~g~i~-~~~~~~~~~ 484 (501)
T PRK11288 459 VLGVADRIVVMREGRIA-GELAREQAT 484 (501)
T ss_pred HHhhCCEEEEEECCEEE-EEEccccCC
Confidence 99999999999999874 556555443
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=316.82 Aligned_cols=208 Identities=25% Similarity=0.348 Sum_probs=158.2
Q ss_pred CCCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccc
Q 008771 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (554)
Q Consensus 93 ~~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~ 172 (554)
+..+.|+++|+++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .|+|++|++.+
T Consensus 35 ~~~~~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g---~i~yv~q~~~l 109 (282)
T cd03291 35 SDDNNLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG---RISFSSQFSWI 109 (282)
T ss_pred CCCCeEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC---EEEEEeCcccc
Confidence 34566999999985 46799999999999999999999999999999999999999999999986 59999999877
Q ss_pred ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC-cc
Q 008771 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-AD 251 (554)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~ 251 (554)
+. .||.+|+....... . ......+ ... . +...+..+... ..
T Consensus 110 ~~-~tv~enl~~~~~~~-~-----~~~~~~l------------------------~~~---~----l~~~l~~~~~~~~~ 151 (282)
T cd03291 110 MP-GTIKENIIFGVSYD-E-----YRYKSVV------------------------KAC---Q----LEEDITKFPEKDNT 151 (282)
T ss_pred cc-cCHHHHhhcccccC-H-----HHHHHHH------------------------HHh---C----CHHHHHhccccccc
Confidence 65 59999986421100 0 0000000 000 0 01111111110 01
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH-c--cCCCeEEEEecCHHHHHhhcceEEE
Q 008771 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL-G--KQDVPMVIISHDRAFLDQLCTKIVE 328 (554)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l-~--~~g~tvIiisHd~~~l~~~~d~i~~ 328 (554)
..++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.+ + ..+.|||+||||++++. .||+|++
T Consensus 152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~-~~d~i~~ 230 (282)
T cd03291 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILI 230 (282)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH-hCCEEEE
Confidence 234556899999999999999999999999999999999999998887643 2 24789999999999985 7999999
Q ss_pred eeCCeeeeccCChhHHH
Q 008771 329 TEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 329 l~~g~~~~~~G~~~~~~ 345 (554)
|++|++. +.|+..++.
T Consensus 231 l~~G~i~-~~g~~~~~~ 246 (282)
T cd03291 231 LHEGSSY-FYGTFSELQ 246 (282)
T ss_pred EECCEEE-EECCHHHHH
Confidence 9999974 557666554
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=348.06 Aligned_cols=240 Identities=20% Similarity=0.241 Sum_probs=176.2
Q ss_pred HhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC-eeeEEceeEEEECCCEEE
Q 008771 49 VSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVG 127 (554)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~ 127 (554)
+......+..++.+..+.+|+.+....+.+... . .. .+......|+++|++|+|++ .++|+|+||+|++|++++
T Consensus 279 l~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~-~-~~---~~~~~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~a 353 (547)
T PRK10522 279 LLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF-P-RP---QAFPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLF 353 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-c-cc---cccCcCceEEEEEEEEEeCCCCeEEecceEEEcCCCEEE
Confidence 444444445677788888888765322211000 0 00 00011235999999999975 569999999999999999
Q ss_pred EECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHH
Q 008771 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLE 197 (554)
Q Consensus 128 lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~ 197 (554)
|+|+||||||||+++|+|+++|++|+|.++|.+. .|+|++|++.+ ++.|+.+|-. ..
T Consensus 354 ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l-f~~ti~~n~~-~~----------- 420 (547)
T PRK10522 354 LIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHL-FDQLLGPEGK-PA----------- 420 (547)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhH-HHHhhccccC-ch-----------
Confidence 9999999999999999999999999999998642 59999999876 4456665510 00
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccc--cCC--CCCCCChhHHHHHHHHHH
Q 008771 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD--GDR--LVASFSSGWQMRMSLGKI 273 (554)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~--~~~--~~~~LSGGqrqRv~LAra 273 (554)
.++.+.++++.+|+.... .+. ....||||||||++||||
T Consensus 421 -------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARa 463 (547)
T PRK10522 421 -------------------------------------NPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLA 463 (547)
T ss_pred -------------------------------------HHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHH
Confidence 011122333344443211 011 125899999999999999
Q ss_pred HccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 274 L~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|+.+|++|||||||++||+++.+.+.+.+. ..++|+|+|||+++.+. .||+|++|++|++..+.|+-.+-
T Consensus 464 l~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~~~~~~~~ 537 (547)
T PRK10522 464 LAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTGEERDA 537 (547)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEecCCchhh
Confidence 999999999999999999999998877653 24899999999998875 69999999999998887765443
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=381.15 Aligned_cols=257 Identities=20% Similarity=0.308 Sum_probs=185.1
Q ss_pred hhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCC-CCCCCCccEEEEeEEEEeCC---eeeEEceeEEEECCCEEEE
Q 008771 53 TVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNT-GASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGL 128 (554)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge~~~l 128 (554)
...+..++.++.+.+++++..+.+++........... .+......|+++||+|+|++ .++|+|+||+|++|+++||
T Consensus 1120 ~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAI 1199 (1466)
T PTZ00265 1120 MSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAI 1199 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEE
Confidence 3344557888888888877655432111000000000 01122345999999999963 4799999999999999999
Q ss_pred ECCCCccHHHHHHHHHCCCCC------------------------------------------------------CceeE
Q 008771 129 VGVNGAGKTTQLRIIAGQEEP------------------------------------------------------DSGNV 154 (554)
Q Consensus 129 vG~NGsGKSTLlk~i~G~~~p------------------------------------------------------~~G~I 154 (554)
||+||||||||+++|+|+++| ++|+|
T Consensus 1200 VG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I 1279 (1466)
T PTZ00265 1200 VGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKI 1279 (1466)
T ss_pred ECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeE
Confidence 999999999999999999998 69999
Q ss_pred EEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Q 008771 155 IKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224 (554)
Q Consensus 155 ~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (554)
.++|.++ .|+||+|++.+ |+.|++||+..+..+. ..+.+...+
T Consensus 1280 ~idG~di~~~~~~~lR~~i~~V~Qep~L-F~gTIreNI~~g~~~a-----t~eeI~~A~--------------------- 1332 (1466)
T PTZ00265 1280 LLDGVDICDYNLKDLRNLFSIVSQEPML-FNMSIYENIKFGKEDA-----TREDVKRAC--------------------- 1332 (1466)
T ss_pred EECCEEHHhCCHHHHHhhccEeCCCCcc-ccccHHHHHhcCCCCC-----CHHHHHHHH---------------------
Confidence 9998653 59999999988 5789999997542100 000010000
Q ss_pred HHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc
Q 008771 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK 304 (554)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 304 (554)
... .+...+..+-+ |++... ...-..||||||||++|||||+.+|+|||||||||+||.++.+.+.+.|.+
T Consensus 1333 ---k~A---~l~~fI~~LP~--GydT~V-Ge~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~ 1403 (1466)
T PTZ00265 1333 ---KFA---AIDEFIESLPN--KYDTNV-GPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVD 1403 (1466)
T ss_pred ---HHc---CCHHHHHhCcc--ccCCcc-CCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 000 11111222111 332222 223457999999999999999999999999999999999999999887754
Q ss_pred ----CCCeEEEEecCHHHHHhhcceEEEeeC----CeeeeccCChhHHHH
Q 008771 305 ----QDVPMVIISHDRAFLDQLCTKIVETEM----GVSRTYEGNYSQYVL 346 (554)
Q Consensus 305 ----~g~tvIiisHd~~~l~~~~d~i~~l~~----g~~~~~~G~~~~~~~ 346 (554)
.++|+|+|||+++.+.. ||+|++|++ |+++...|++++.+.
T Consensus 1404 ~~~~~~~TvIiIaHRlsti~~-aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1404 IKDKADKTIITIAHRIASIKR-SDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HhccCCCEEEEEechHHHHHh-CCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 37999999999999965 999999999 886667899887765
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=291.11 Aligned_cols=196 Identities=22% Similarity=0.356 Sum_probs=169.1
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v 166 (554)
.++++++.+.-++.++|+++||++.+||+++|+||+|||||||+|+++.+++|++|+++|.|.+. +|+|+
T Consensus 3 lle~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~ 82 (223)
T COG4619 3 LLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYC 82 (223)
T ss_pred chHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHH
Confidence 35667776666788999999999999999999999999999999999999999999999998753 59999
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
-|.|.++ ..||.+|+..++.- . +...-...+..+|..+
T Consensus 83 ~Q~paLf-g~tVeDNlifP~~~---------------r--------------------------~rr~dr~aa~~llar~ 120 (223)
T COG4619 83 AQTPALF-GDTVEDNLIFPWQI---------------R--------------------------NRRPDRAAALDLLARF 120 (223)
T ss_pred HcCcccc-ccchhhccccchHH---------------h--------------------------ccCCChHHHHHHHHHc
Confidence 9999984 55999998654310 0 0111234567788999
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhh
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIiisHd~~~l~~~ 322 (554)
+++...+++.+.+|||||+||++|+|-|..-|+||||||||++||+.+.+.+.+++ ++...+++.||||.+...+.
T Consensus 121 ~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rh 200 (223)
T COG4619 121 ALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRH 200 (223)
T ss_pred CCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhh
Confidence 99988999999999999999999999999999999999999999999988887765 45689999999999998889
Q ss_pred cceEEEeeCCee
Q 008771 323 CTKIVETEMGVS 334 (554)
Q Consensus 323 ~d~i~~l~~g~~ 334 (554)
+|++|-+.+|+.
T Consensus 201 a~k~itl~~G~~ 212 (223)
T COG4619 201 ADKVITLQPGHA 212 (223)
T ss_pred hheEEEeccCcc
Confidence 999999998865
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=347.39 Aligned_cols=208 Identities=25% Similarity=0.381 Sum_probs=166.8
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-CceeEEEcCCC-----------ce
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKAKSN-----------MK 162 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-~~G~I~~~~~~-----------~~ 162 (554)
.++|+++|+++.|+++.+|+|+||+|++||+++|+|+||||||||+|+|+|+.+| ++|+|.++|.. ..
T Consensus 258 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred CceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 4579999999999888899999999999999999999999999999999998876 79999998742 24
Q ss_pred EEEEecccccccC--ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 163 IAFLSQEFEVSMS--RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 163 i~~v~Q~~~~~~~--~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
|+|++|++.+++. .++.+++...+.... . .. .. .....++++.
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~--------------~------~~--------------~~-~~~~~~~~~~ 382 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSI--------------G------IY--------------QA-VSDRQQKLAQ 382 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhcccccc--------------c------cc--------------cC-CCHHHHHHHH
Confidence 9999998765432 456554432110000 0 00 00 0011234678
Q ss_pred HHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CC-CeEEEEecCH
Q 008771 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QD-VPMVIISHDR 316 (554)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g-~tvIiisHd~ 316 (554)
++++.+|+.....++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.++|++ .+ .|||+||||+
T Consensus 383 ~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~ 462 (490)
T PRK10938 383 QWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA 462 (490)
T ss_pred HHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch
Confidence 8899999975367899999999999999999999999999999999999999999999988753 34 5799999999
Q ss_pred HHHHh-hcceEEEeeCCeeeec
Q 008771 317 AFLDQ-LCTKIVETEMGVSRTY 337 (554)
Q Consensus 317 ~~l~~-~~d~i~~l~~g~~~~~ 337 (554)
+++.. +||+|++|++|++..+
T Consensus 463 ~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 463 EDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred hhhhhhhheeEEEecCCceEEe
Confidence 99987 5999999999987654
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=288.00 Aligned_cols=144 Identities=51% Similarity=0.847 Sum_probs=133.0
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCcc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~t 177 (554)
|+++|+++.|++.++|+++||++++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-~~i~~~~~--------- 70 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-VKIGYFEQ--------- 70 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-EEEEEEcc---------
Confidence 47899999998888999999999999999999999999999999999999999999999863 23444331
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCC
Q 008771 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (554)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~ 257 (554)
T Consensus 71 -------------------------------------------------------------------------------- 70 (144)
T cd03221 71 -------------------------------------------------------------------------------- 70 (144)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 258 ~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
||+||+||++|||||+.+|+++||||||++||+.++..+.+.+++.+.|+|++||+++++..+||++++|++|+
T Consensus 71 --lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 71 --LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 89999999999999999999999999999999999999999998878899999999999999999999999874
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=347.85 Aligned_cols=208 Identities=19% Similarity=0.330 Sum_probs=169.3
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~ 164 (554)
+.|+++|+++ .+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..||
T Consensus 256 ~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 330 (501)
T PRK10762 256 VRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV 330 (501)
T ss_pred cEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCE
Confidence 4689999985 37999999999999999999999999999999999999999999998742 2499
Q ss_pred EEeccc---ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 165 FLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 165 ~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
|+||++ .+++..||.+|+....... ... .. .........+++.+
T Consensus 331 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~-------------~~~------~~--------------~~~~~~~~~~~~~~ 377 (501)
T PRK10762 331 YISEDRKRDGLVLGMSVKENMSLTALRY-------------FSR------AG--------------GSLKHADEQQAVSD 377 (501)
T ss_pred EecCccccCCCcCCCcHHHHhhhhhhhh-------------hcc------cc--------------cccCHHHHHHHHHH
Confidence 999996 4667789999885321000 000 00 00011122456788
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~ 318 (554)
+++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .|.|||+||||+++
T Consensus 378 ~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~ 457 (501)
T PRK10762 378 FIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPE 457 (501)
T ss_pred HHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 899999954457899999999999999999999999999999999999999999998888753 58899999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChh
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYS 342 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~ 342 (554)
+..+||+|++|++|++. +.|+..
T Consensus 458 ~~~~~d~v~~l~~G~i~-~~~~~~ 480 (501)
T PRK10762 458 VLGMSDRILVMHEGRIS-GEFTRE 480 (501)
T ss_pred HHhhCCEEEEEECCEEE-EEeccc
Confidence 99999999999999874 444443
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=298.86 Aligned_cols=211 Identities=29% Similarity=0.390 Sum_probs=177.0
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v 166 (554)
+|+++||+|+|+++.+++++|+.|++|.+++|||||||||||||.+++.++++++|+|.++|.+. +++.+
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999998653 47778
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
-|+..+...+||+|-+.++-.+. + -|+ .-.+-+..+++.++.+
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPY---------------S-------qGR---------------lt~eD~~~I~~aieyl 123 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPY---------------S-------QGR---------------LTKEDRRIINEAIEYL 123 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcc---------------c-------CCC---------------CchHHHHHHHHHHHHh
Confidence 88888777889988765431000 0 000 0122345677788888
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhh
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~ 322 (554)
+|. +..+|+..+||||||||..||..++++.|.++||||.|+||......+.+.|+ +.|+||++|-||+.|+..+
T Consensus 124 ~L~-~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~Y 202 (252)
T COG4604 124 HLE-DLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCY 202 (252)
T ss_pred ccc-chHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhh
Confidence 886 56789999999999999999999999999999999999999987666665553 5799999999999999999
Q ss_pred cceEEEeeCCeeeeccCChhHHHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+|+|+-|.+|++ +..|+.++...
T Consensus 203 sD~IVAlK~G~v-v~~G~~~eii~ 225 (252)
T COG4604 203 SDHIVALKNGKV-VKQGSPDEIIQ 225 (252)
T ss_pred hhheeeecCCEE-EecCCHHHhcC
Confidence 999999999997 67888776554
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=346.10 Aligned_cols=239 Identities=27% Similarity=0.386 Sum_probs=171.2
Q ss_pred HhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCEE
Q 008771 49 VSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKV 126 (554)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~ 126 (554)
+......+..++.+....+++.+..+.+.+... .. .... .....|+++||+|+|++ +++|+|+||+|++|+++
T Consensus 277 l~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~~-~~~~-~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~ 351 (529)
T TIGR02857 277 LRQLGADYHARADGVAAAEALFAVLDAPRPLAG---KA-PVTA-APAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERV 351 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---Cc-CCCC-CCCCeEEEEEEEEECCCCCcccccceeEEECCCCEE
Confidence 344444556677888888887776542211110 00 0000 11235999999999975 46999999999999999
Q ss_pred EEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHH
Q 008771 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (554)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (554)
+|+|+||||||||+++|+|+++|++|+|.++|.+. .|+||+|++.++ +.|++||+..+.... . .
T Consensus 352 ~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~ti~~Ni~~~~~~~-~----~ 425 (529)
T TIGR02857 352 ALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLF-AGTIAENIRLARPDA-S----D 425 (529)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCccc-CcCHHHHHhccCCCC-C----H
Confidence 99999999999999999999999999999998643 599999999875 579999986431100 0 0
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHcc
Q 008771 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (554)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 276 (554)
+.+...+ +.. .+...+.++-+ |++. .......+||||||||++|||||+.
T Consensus 426 ~~i~~a~------------------------~~~---~l~~~i~~lp~--Gldt-~v~e~g~~LSgGq~qri~laRal~~ 475 (529)
T TIGR02857 426 AEIRRAL------------------------ERA---GLDEFVAALPQ--GLDT-LIGEGGAGLSGGQAQRLALARAFLR 475 (529)
T ss_pred HHHHHHH------------------------HHc---CcHHHHHhCcc--cccc-hhccccccCCHHHHHHHHHHHHHhc
Confidence 0000000 000 01111111111 2221 1223346899999999999999999
Q ss_pred CCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEe
Q 008771 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (554)
Q Consensus 277 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l 329 (554)
+|++|||||||++||+.+.+.+.+.+.+ .++|+|+|||+++.+. .||+|++|
T Consensus 476 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 476 DAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-hCCEEEeC
Confidence 9999999999999999999999888865 5799999999999985 59999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=348.12 Aligned_cols=206 Identities=18% Similarity=0.308 Sum_probs=168.0
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceE
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i 163 (554)
+++|+++|+++ .+|+|+||+|++|+++||+|+||||||||+|+|+|+++|++|+|.++|.+ ..|
T Consensus 266 ~~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 266 APVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred CceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 34799999984 26999999999999999999999999999999999999999999998742 259
Q ss_pred EEEeccc---ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 164 AFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 164 ~~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
+|+||++ .+++..|+.+|+........ .. ........+.+.
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~-------------~~-----------------------~~~~~~~~~~~~ 384 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRR-------------GF-----------------------WIKPARENAVLE 384 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhh-------------cc-----------------------ccChHHHHHHHH
Confidence 9999985 36677899888742100000 00 000011234577
Q ss_pred HHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHH
Q 008771 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA 317 (554)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~ 317 (554)
++++.+|+.....++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.+.|++ .|.|||+||||++
T Consensus 385 ~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~ 464 (510)
T PRK15439 385 RYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE 464 (510)
T ss_pred HHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 8899999963457899999999999999999999999999999999999999999999888653 5899999999999
Q ss_pred HHHhhcceEEEeeCCeeeeccCChh
Q 008771 318 FLDQLCTKIVETEMGVSRTYEGNYS 342 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~~~~G~~~ 342 (554)
++.++||+|++|++|++. +.|..+
T Consensus 465 ~i~~~~d~i~~l~~G~i~-~~~~~~ 488 (510)
T PRK15439 465 EIEQMADRVLVMHQGEIS-GALTGA 488 (510)
T ss_pred HHHHhCCEEEEEECCEEE-EEEccc
Confidence 999999999999999874 444433
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=305.89 Aligned_cols=207 Identities=31% Similarity=0.435 Sum_probs=170.5
Q ss_pred CCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ce
Q 008771 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MK 162 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~ 162 (554)
.++.|+++||++.|+++++|+||||+|++||.|+|+|+||||||||+++++|.++|++|.+.+.|.. .+
T Consensus 28 ~~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 28 NEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred CcceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 3467999999999999999999999999999999999999999999999999999999999876642 25
Q ss_pred EEEEeccc--ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 163 IAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 163 i~~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
||||+-.. .+..+.+|+|.+.+++..-... + +....+....++.
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~-----------------------y-----------~~~~~~~~~~~a~ 153 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGI-----------------------Y-----------QEDLTAEDLAAAQ 153 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccc-----------------------c-----------ccCCCHHHHHHHH
Confidence 89997543 2334567777766554211000 0 0000112345688
Q ss_pred HHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc-----CCCeEEEEecC
Q 008771 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-----QDVPMVIISHD 315 (554)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~-----~g~tvIiisHd 315 (554)
.+++.+|+.. ..+++..+||-||||||.|||||+.+|++|||||||+|||...++.|.+.|.+ .+.++|+|||.
T Consensus 154 ~lle~~g~~~-la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh 232 (257)
T COG1119 154 WLLELLGAKH-LADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHH 232 (257)
T ss_pred HHHHHcchhh-hccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcc
Confidence 8999999874 78999999999999999999999999999999999999999999888887753 36799999999
Q ss_pred HHHHHhhcceEEEeeCCeee
Q 008771 316 RAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~ 335 (554)
.+++..+.++++.+.+|+++
T Consensus 233 ~eEi~~~~th~lll~~g~v~ 252 (257)
T COG1119 233 AEEIPPCFTHRLLLKEGEVV 252 (257)
T ss_pred hhhcccccceEEEeeCCcee
Confidence 99999999999999999873
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=375.85 Aligned_cols=208 Identities=26% Similarity=0.413 Sum_probs=178.9
Q ss_pred CccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------eE
Q 008771 95 SSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KI 163 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------~i 163 (554)
..+|+++||+|.|++ +.+|+||||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+. .|
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhE
Confidence 356999999999985 5799999999999999999999999999999999999999999999988542 49
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
||+||++.+++.+|++|++..... + ..+...+.++.+.+++
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~---------------l------------------------~g~~~~~~~~~v~~lL 2055 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYAR---------------L------------------------RGVPAEEIEKVANWSI 2055 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHH---------------h------------------------cCCCHHHHHHHHHHHH
Confidence 999999998889999998753110 0 0011123445677889
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~ 320 (554)
+.+||. +..++++.+|||||||||+||+||+.+|+||||||||+|||+.+++.+.+.++ +.|+|||++||+++++.
T Consensus 2056 e~lgL~-~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e 2134 (2272)
T TIGR01257 2056 QSLGLS-LYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECE 2134 (2272)
T ss_pred HHcCCH-HHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 999996 46789999999999999999999999999999999999999999999988764 35899999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChhH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~ 343 (554)
.+||||++|++|++. +.|+..+
T Consensus 2135 ~lcDrV~IL~~G~i~-~~Gs~q~ 2156 (2272)
T TIGR01257 2135 ALCTRLAIMVKGAFQ-CLGTIQH 2156 (2272)
T ss_pred HhCCEEEEEECCEEE-EECCHHH
Confidence 999999999999874 5676544
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=346.24 Aligned_cols=229 Identities=25% Similarity=0.348 Sum_probs=159.7
Q ss_pred hhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC-eeeEEceeEEEECCCEEEEE
Q 008771 51 AATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLV 129 (554)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lv 129 (554)
.....+..++.+..+.+|+.+..+.+.+.... ..+...........|+++||+|+|++ +++|+|+||+|++|++++|+
T Consensus 289 ~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIv 367 (529)
T TIGR02868 289 PLPAAAQALTRVRAAAERIEEVTGAKGPRPEG-VVPAAGALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAIL 367 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC-CCCCCcccCCCCceEEEEEEEEecCCCCceeecceEEEcCCCEEEEE
Confidence 33334455777778888877665443221110 00000000112245999999999975 56999999999999999999
Q ss_pred CCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHH
Q 008771 130 GVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200 (554)
Q Consensus 130 G~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~ 200 (554)
|+||||||||+++|+|+++|++|+|.++|.+. .|+||||++.+ ++.|++||+..+..+. . .+++.
T Consensus 368 G~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~l-F~~TI~eNI~~g~~~~-~----~e~i~ 441 (529)
T TIGR02868 368 GPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHL-FDTTVRDNLRLGRPDA-T----DEELW 441 (529)
T ss_pred CCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCccc-ccccHHHHHhccCCCC-C----HHHHH
Confidence 99999999999999999999999999998653 59999999988 5669999997532100 0 00000
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCe
Q 008771 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280 (554)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~l 280 (554)
+.++ ..+ +.+.+.++-+ |++... ...-..||||||||++|||||+.+|++
T Consensus 442 ~al~------------------------~a~---l~~~i~~lp~--GldT~i-ge~G~~LSGGQrQRiaiARall~~~~i 491 (529)
T TIGR02868 442 AALE------------------------RVG---LADWLRSLPD--GLDTVL-GEGGARLSGGERQRLALARALLADAPI 491 (529)
T ss_pred HHHH------------------------HcC---CHHHHHhCcc--cccchh-ccccCcCCHHHHHHHHHHHHHhcCCCE
Confidence 1110 000 1111111111 222211 122357999999999999999999999
Q ss_pred EeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCH
Q 008771 281 LLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDR 316 (554)
Q Consensus 281 LlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~ 316 (554)
||||||||+||+++.+.+.+.+.+ .++|+|+|||++
T Consensus 492 liLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 492 LLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999988865 479999999984
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=375.94 Aligned_cols=258 Identities=21% Similarity=0.275 Sum_probs=185.5
Q ss_pred hhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEE
Q 008771 51 AATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGL 128 (554)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~l 128 (554)
.....+..++.+..+++|+.+..+.+.+..............+..+.|+++||+|+|++ .++|+|+||+|++||++||
T Consensus 1188 ~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaI 1267 (1495)
T PLN03232 1188 GVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGV 1267 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEE
Confidence 33344456777888888887765443321110000000000112346999999999953 4799999999999999999
Q ss_pred ECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHH
Q 008771 129 VGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER 198 (554)
Q Consensus 129 vG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~ 198 (554)
||+||||||||+++|.|+++|++|+|.++|.++ +|+||||+|.++ +.|+++|+...- + .. .++
T Consensus 1268 VG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF-~gTIr~NL~~~~-~-~s----dee 1340 (1495)
T PLN03232 1268 VGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLF-SGTVRFNIDPFS-E-HN----DAD 1340 (1495)
T ss_pred ECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeee-CccHHHHcCCCC-C-CC----HHH
Confidence 999999999999999999999999999998653 599999999885 569999985320 0 00 000
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCC
Q 008771 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278 (554)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p 278 (554)
+.+.+ +.. .+...+.++- .|++.. ......+||||||||++|||||+++|
T Consensus 1341 i~~al------------------------~~a---~l~~~I~~lp--~GLdt~-v~e~G~~LSgGQrQrlaLARALLr~~ 1390 (1495)
T PLN03232 1341 LWEAL------------------------ERA---HIKDVIDRNP--FGLDAE-VSEGGENFSVGQRQLLSLARALLRRS 1390 (1495)
T ss_pred HHHHH------------------------HHc---CCHHHHHhCc--CCCCce-ecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 00000 000 1111121111 144322 23334689999999999999999999
Q ss_pred CeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 279 DLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 279 ~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
+|||||||||+||.++.+.+.+.|++ .++|+|+|+|+++.+.. ||+|++|++|++.. .|++++.+..
T Consensus 1391 ~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE-~Gt~~eLl~~ 1459 (1495)
T PLN03232 1391 KILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLE-YDSPQELLSR 1459 (1495)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHhC
Confidence 99999999999999999999988865 47999999999999986 99999999999865 4777776653
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=349.31 Aligned_cols=244 Identities=16% Similarity=0.274 Sum_probs=181.1
Q ss_pred hhHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhh----ccccC-------------C--CCC-CCCCccEEEEeEEEE
Q 008771 47 CQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKY----SNKQS-------------N--TGA-SSISSGVKLENISKS 106 (554)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-------------~--~~~-~~~~~~i~~~~ls~~ 106 (554)
..+.........++++...++|+++..+.+.+.... ..... . ... ......|+++||++.
T Consensus 381 ~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~ 460 (659)
T TIGR00954 381 DALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLV 460 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEE
Confidence 344555556677888999999988876543321100 00000 0 000 012346999999999
Q ss_pred eC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHh
Q 008771 107 YK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185 (554)
Q Consensus 107 y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~ 185 (554)
|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++ ...|+||||++.+++. |++||+..+
T Consensus 461 ~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-~~~i~~v~Q~~~l~~~-tv~eni~~~ 538 (659)
T TIGR00954 461 TPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-KGKLFYVPQRPYMTLG-TLRDQIIYP 538 (659)
T ss_pred CCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-CCcEEEECCCCCCCCc-CHHHHHhcC
Confidence 95 55799999999999999999999999999999999999999999999875 3479999999987655 999998643
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCC---------C
Q 008771 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR---------L 256 (554)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~---------~ 256 (554)
.... . .. .....++++.++++.+|+.. ..++ .
T Consensus 539 ~~~~-~-----------~~--------------------------~~~~~~~~i~~~l~~~~l~~-~~~~~~g~~~~~~~ 579 (659)
T TIGR00954 539 DSSE-D-----------MK--------------------------RRGLSDKDLEQILDNVQLTH-ILEREGGWSAVQDW 579 (659)
T ss_pred CChh-h-----------hh--------------------------ccCCCHHHHHHHHHHcCCHH-HHhhcCCccccccc
Confidence 2100 0 00 00001223344455555532 1122 2
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCC
Q 008771 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332 (554)
Q Consensus 257 ~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g 332 (554)
..+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.+++.|.|+|+||||++++ ..||+|++|+.+
T Consensus 580 ~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~-~~~d~il~l~~~ 654 (659)
T TIGR00954 580 MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLW-KYHEYLLYMDGR 654 (659)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHH-HhCCEEEEEeCC
Confidence 478999999999999999999999999999999999999999999988899999999999998 579999999743
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=375.08 Aligned_cols=252 Identities=22% Similarity=0.294 Sum_probs=181.9
Q ss_pred HHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCc
Q 008771 57 KSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGA 134 (554)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGs 134 (554)
..++.+..+++|+.+..+.+.+..............+..+.|+++||+|+|.+ .++|+|+||+|++||++||||++||
T Consensus 1197 ~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGS 1276 (1622)
T PLN03130 1197 SLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGA 1276 (1622)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCC
Confidence 34567778888887654433221110000000000112356999999999964 3699999999999999999999999
Q ss_pred cHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 008771 135 GKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204 (554)
Q Consensus 135 GKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~ 204 (554)
|||||+++|.|+++|++|+|.++|.++ +|+||||+|.++ ..|+++|+...- + . ..+++...+
T Consensus 1277 GKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF-~GTIreNLd~~~-~-~----tdeei~~Al- 1348 (1622)
T PLN03130 1277 GKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLF-SGTVRFNLDPFN-E-H----NDADLWESL- 1348 (1622)
T ss_pred CHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccc-cccHHHHhCcCC-C-C----CHHHHHHHH-
Confidence 999999999999999999999999653 599999999885 569999985321 0 0 000000000
Q ss_pred hccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeec
Q 008771 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284 (554)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLD 284 (554)
+.. .+...+..+- .|++... .....+||||||||++|||||+++|+|||||
T Consensus 1349 -----------------------~~a---~l~~~I~~lp--~GLdt~V-ge~G~nLSgGQrQrlaLARALLr~p~ILILD 1399 (1622)
T PLN03130 1349 -----------------------ERA---HLKDVIRRNS--LGLDAEV-SEAGENFSVGQRQLLSLARALLRRSKILVLD 1399 (1622)
T ss_pred -----------------------HHc---CcHHHHHhCc--cccCccc-cCCCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 000 1111122111 2443222 2334689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 285 EPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 285 EPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
||||+||.++.+.+.+.|++ .++|+|+|+|+++.+.. ||+|++|++|++.. .|++.+.+..
T Consensus 1400 EATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE-~Gt~~eLl~~ 1462 (1622)
T PLN03130 1400 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVE-FDTPENLLSN 1462 (1622)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEE-eCCHHHHHhC
Confidence 99999999999999988865 47999999999999976 99999999999865 4777776653
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=342.66 Aligned_cols=238 Identities=19% Similarity=0.267 Sum_probs=172.1
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCc---chhhhhhhccccCC--CCCCCCCccEEEEeEEEEeCCe-----eeEEcee
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSA---DEFENKKYSNKQSN--TGASSISSGVKLENISKSYKGV-----TVLKDVT 117 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~i~~~~ls~~y~~~-----~~l~~is 117 (554)
.+......+..++.+..+.+|+.+... ++.......+.... ..+......|+++||+|+|++. ++|+|+|
T Consensus 283 pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs 362 (555)
T TIGR01194 283 PLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPID 362 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccce
Confidence 455555556678888888888877632 21110000000000 0001123459999999999752 5999999
Q ss_pred EEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhH
Q 008771 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFK 187 (554)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~ 187 (554)
|+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+. .++||+|++.++ +.|+++|....
T Consensus 363 ~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf-~~ti~~n~~~~-- 439 (555)
T TIGR01194 363 LRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLF-DDLIGPDEGEH-- 439 (555)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhh-hhhhhcccccc--
Confidence 99999999999999999999999999999999999999998542 489999998774 45777663100
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccc-----cCCCCCCCCh
Q 008771 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD-----GDRLVASFSS 262 (554)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~-----~~~~~~~LSG 262 (554)
..++++.++++.+++.... .......|||
T Consensus 440 ----------------------------------------------~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSg 473 (555)
T TIGR01194 440 ----------------------------------------------ASLDNAQQYLQRLEIADKVKIEDGGFSTTTALST 473 (555)
T ss_pred ----------------------------------------------hhHHHHHHHHHHcCCchhhcccccccCCcccCCH
Confidence 0011222333333432110 0112368999
Q ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcceEEEeeCCeee
Q 008771 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 263 GqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~ 335 (554)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.+ +..++|+|+|||+++.+. .||+|++|++|++.
T Consensus 474 Gq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l~~G~i~ 549 (555)
T TIGR01194 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIKLAAGCIV 549 (555)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999886643 245899999999999875 79999999999875
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=303.91 Aligned_cols=191 Identities=30% Similarity=0.404 Sum_probs=154.0
Q ss_pred EEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----ceEEEEecccccc--cCccHHHHHHHhhHHHH
Q 008771 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEFEVS--MSRTVREEFMSAFKEEM 190 (554)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----~~i~~v~Q~~~~~--~~~tv~e~~~~~~~~~~ 190 (554)
|+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|++.++ +..|+.+|+........
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 5789999999999999999999999999999999999999864 3599999998764 34789988753210000
Q ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHH
Q 008771 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270 (554)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~L 270 (554)
. .. .......+.++.++++.+|+. ...++.+.+|||||||||+|
T Consensus 81 --------------~------~~---------------~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 124 (223)
T TIGR03771 81 --------------G------WL---------------RRPCVADFAAVRDALRRVGLT-ELADRPVGELSGGQRQRVLV 124 (223)
T ss_pred --------------c------cc---------------cCCcHHHHHHHHHHHHHhCCc-hhhcCChhhCCHHHHHHHHH
Confidence 0 00 000011234577788899986 45688899999999999999
Q ss_pred HHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 271 GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 271 AraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||||+.+|++|||||||++||+.++..+.++|++ .|.|+|++|||++++.++||+|+++ +|++. +.|+.+++..
T Consensus 125 aral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~-~~~~~~~~~~ 201 (223)
T TIGR03771 125 ARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVI-ADGTPQQLQD 201 (223)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE-eecCHHHhcC
Confidence 9999999999999999999999999999888753 4889999999999999999999999 78874 6677665533
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-38 Score=285.87 Aligned_cols=216 Identities=29% Similarity=0.448 Sum_probs=182.3
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcC-CC-----------ceE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK-SN-----------MKI 163 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~-~~-----------~~i 163 (554)
+.++++||+++|++..+|+++||+|.+||.-+||||||+||||++.+|+|..+|+.|+|+++| .+ ..|
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI 83 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence 568999999999999999999999999999999999999999999999999999999999998 32 259
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
|.-||.|..|...||+||+..+......+ +..+.. . -..+-+.+++++|
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v--------------------~a~L~~----------r-~~~~e~~ride~L 132 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALNRDKSV--------------------FASLFA----------R-LRAEERRRIDELL 132 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhcCCcch--------------------HHHhhh----------h-cChhHHHHHHHHH
Confidence 99999999999999999986543211000 000000 0 1122346899999
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~ 321 (554)
...||. +..++....||-||||++.|+..++++|++|+||||++|+-........++|++ .+.+|++|.||+.|+..
T Consensus 133 a~igL~-~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~ 211 (249)
T COG4674 133 ATIGLG-DERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVRE 211 (249)
T ss_pred HHcccc-hhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHH
Confidence 999996 566888999999999999999999999999999999999999888777777764 46799999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+|++|.+|+.|.+ ...|+.++.
T Consensus 212 ~A~~VTVlh~G~V-L~EGsld~v 233 (249)
T COG4674 212 IADKVTVLHEGSV-LAEGSLDEV 233 (249)
T ss_pred hhheeEEEeccce-eecccHHHh
Confidence 9999999999976 678887754
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=370.53 Aligned_cols=260 Identities=23% Similarity=0.279 Sum_probs=186.5
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~ 125 (554)
.+......+..+..+..+++|+.+..+.+.+.............-+..+.|+++||+++|++ .++|+||||+|++||+
T Consensus 1235 ~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~Gek 1314 (1522)
T TIGR00957 1235 YLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEK 1314 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCE
Confidence 33444445566788888888887765443321100000000000123356999999999964 4699999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
+||||++|||||||+++|.|+++|++|+|.++|.++ +|+||||+|.++ +.|+++|+.. +.+ ..
T Consensus 1315 iaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF-~gTIr~NLdp-~~~-~s---- 1387 (1522)
T TIGR00957 1315 VGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLF-SGSLRMNLDP-FSQ-YS---- 1387 (1522)
T ss_pred EEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCccc-CccHHHHcCc-ccC-CC----
Confidence 999999999999999999999999999999999653 599999999885 4699999841 100 00
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 275 (554)
-+.+...+ +.. .+...+.++- -|++... ...-..||||||||++|||||+
T Consensus 1388 deei~~al------------------------~~a---~l~~~I~~lp--~GLdt~v-~e~G~~LSgGQrQrl~LARALL 1437 (1522)
T TIGR00957 1388 DEEVWWAL------------------------ELA---HLKTFVSALP--DKLDHEC-AEGGENLSVGQRQLVCLARALL 1437 (1522)
T ss_pred HHHHHHHH------------------------HHc---CcHHHHhhCc--cCCCcee-cCCCCcCCHHHHHHHHHHHHHH
Confidence 00000000 000 1111122111 1443222 2234579999999999999999
Q ss_pred cCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
++|+||||||||++||.++...+.+.|++ .++|+|+|+|+++.+.. ||+|++|++|++..+ |++.+.+.
T Consensus 1438 r~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~-G~~~eLl~ 1508 (1522)
T TIGR00957 1438 RKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEF-GAPSNLLQ 1508 (1522)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEE-CCHHHHHh
Confidence 99999999999999999999999998865 48999999999999976 999999999998654 67766554
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=301.48 Aligned_cols=194 Identities=27% Similarity=0.432 Sum_probs=162.1
Q ss_pred eEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------ceEEEEe
Q 008771 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLS 167 (554)
Q Consensus 102 ~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~~i~~v~ 167 (554)
|+.+.+|+. .| +++|+++.-.++||.|+||||||||+|+|+|+..|+.|.|.++|.. .+|||||
T Consensus 5 ~~~~~lG~~-~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVF 82 (352)
T COG4148 5 NFRQRLGNF-AL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF 82 (352)
T ss_pred ehhhhcCce-EE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEe
Confidence 334444432 33 5799998867999999999999999999999999999999998742 3699999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
||..+|+.+||+.|+..+... .....++.+.+.+|
T Consensus 83 QDARLFpH~tVrgNL~YG~~~---------------------------------------------~~~~~fd~iv~lLG 117 (352)
T COG4148 83 QDARLFPHYTVRGNLRYGMWK---------------------------------------------SMRAQFDQLVALLG 117 (352)
T ss_pred eccccccceEEecchhhhhcc---------------------------------------------cchHhHHHHHHHhC
Confidence 999999999999998643210 01234566778889
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhc
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~ 323 (554)
+. +.++|+|.+|||||||||+|+|||+..|++||||||.++||..-+..+..+|. +.+..|++|||.++++.++|
T Consensus 118 I~-hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLA 196 (352)
T COG4148 118 IE-HLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLA 196 (352)
T ss_pred cH-HHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhh
Confidence 96 57799999999999999999999999999999999999999998888887764 46899999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|+|++|++|++. ..|...+.
T Consensus 197 d~vV~le~GkV~-A~g~~e~v 216 (352)
T COG4148 197 DRVVVLENGKVK-ASGPLEEV 216 (352)
T ss_pred heEEEecCCeEE-ecCcHHHH
Confidence 999999999984 44554443
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=346.43 Aligned_cols=211 Identities=25% Similarity=0.370 Sum_probs=173.4
Q ss_pred EEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC--ceeEEEcCCC------ceEEEEeccc
Q 008771 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD--SGNVIKAKSN------MKIAFLSQEF 170 (554)
Q Consensus 99 ~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~--~G~I~~~~~~------~~i~~v~Q~~ 170 (554)
.++|++++|+++.+|+|+||+|++||++||+||||||||||+++|+|..+|+ +|+|.++|.+ ..++||+|++
T Consensus 70 ~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~ 149 (659)
T PLN03211 70 KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDD 149 (659)
T ss_pred ccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECccc
Confidence 4678899999889999999999999999999999999999999999999885 8999999853 2599999999
Q ss_pred ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc
Q 008771 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (554)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (554)
.+++..||+|++..... +. .. .....++..++++++++.+||.+
T Consensus 150 ~l~~~lTV~E~l~~~a~---------------~~--~~-------------------~~~~~~~~~~~v~~~l~~lgL~~ 193 (659)
T PLN03211 150 ILYPHLTVRETLVFCSL---------------LR--LP-------------------KSLTKQEKILVAESVISELGLTK 193 (659)
T ss_pred ccCCcCCHHHHHHHHHH---------------hC--CC-------------------CCCCHHHHHHHHHHHHHHcCChh
Confidence 88888999999853210 00 00 00011223456788899999964
Q ss_pred cc----cCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHH-HHHhh
Q 008771 251 DD----GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA-FLDQL 322 (554)
Q Consensus 251 ~~----~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~-~l~~~ 322 (554)
.. .++.+..|||||||||+||++|+.+|+||||||||+|||..+...+.+.|++ .|+|||++||+++ .+.++
T Consensus 194 ~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~ 273 (659)
T PLN03211 194 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQM 273 (659)
T ss_pred hcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh
Confidence 21 2456788999999999999999999999999999999999999999888753 5899999999998 58889
Q ss_pred cceEEEeeCCeeeeccCChhHHHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||+|++|++|++ .|.|+.++...
T Consensus 274 ~D~iilL~~G~i-v~~G~~~~~~~ 296 (659)
T PLN03211 274 FDSVLVLSEGRC-LFFGKGSDAMA 296 (659)
T ss_pred hceEEEecCCcE-EEECCHHHHHH
Confidence 999999999986 57787665443
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=315.40 Aligned_cols=250 Identities=24% Similarity=0.378 Sum_probs=183.0
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~ 125 (554)
-+..+...|++...++.+-.|+-+.....+.... ...-..+...+.++++++.=++ +++++++||++.+||.
T Consensus 291 Pid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~------~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~ 364 (580)
T COG4618 291 PIDLAIANWKQFVAARQSYKRLNELLAELPAAAE------RMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEA 364 (580)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC------CCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCce
Confidence 4556677788888888887777555433322111 1111234567999999976543 5799999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
+|||||||||||||.|+|.|..+|.+|.|++||.+ ..|||+||+..+ |..||.|||.-.-.+ .
T Consensus 365 lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeL-F~GTIaeNIaRf~~~-~----- 437 (580)
T COG4618 365 LGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVEL-FDGTIAENIARFGEE-A----- 437 (580)
T ss_pred EEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCccccee-cCCcHHHHHHhcccc-C-----
Confidence 99999999999999999999999999999999854 369999999998 556999999642100 0
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCccccCCCCCCCChhHHHHHHHHHH
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKI 273 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAra 273 (554)
++...+ ..+. .. .+++++-.+ |.+... ...-..||||||||++||||
T Consensus 438 ------------d~~kIi-----------eAA~---lA----gvHelIl~lP~GYdT~i-G~~G~~LSgGQRQRIaLARA 486 (580)
T COG4618 438 ------------DPEKVI-----------EAAR---LA----GVHELILRLPQGYDTRI-GEGGATLSGGQRQRIALARA 486 (580)
T ss_pred ------------CHHHHH-----------HHHH---Hc----ChHHHHHhCcCCccCcc-CCCCCCCCchHHHHHHHHHH
Confidence 000000 0000 00 112222111 222221 12235899999999999999
Q ss_pred HccCCCeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhH
Q 008771 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 274 L~~~p~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~ 343 (554)
|..+|.+++||||-++||.+....|.+.+ ++.|+|+|+|||+++.+. .+|+|++|++|.+..| |.-++
T Consensus 487 lYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~~F-G~r~e 557 (580)
T COG4618 487 LYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA-SVDKILVLQDGRIAAF-GPREE 557 (580)
T ss_pred HcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHh-hcceeeeecCChHHhc-CCHHH
Confidence 99999999999999999999999998875 568999999999999996 6999999999987544 44433
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=296.04 Aligned_cols=186 Identities=18% Similarity=0.200 Sum_probs=145.1
Q ss_pred eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEE-EcCCCceEEEEecccccccCccHHHHHHHhhHHH
Q 008771 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEE 189 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~-~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~ 189 (554)
++|+||||+|++|++++|+|+||||||||+++|+|+++|++|+|. +++.... +.+.+.+++.+|+.+|+......
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~---~~~~~~l~~~ltv~enl~~~~~~- 76 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP---LGANSFILPGLTGEENARMMASL- 76 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec---cccccccCCcCcHHHHHHHHHHH-
Confidence 379999999999999999999999999999999999999999997 6654332 33556677788999998532100
Q ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHH
Q 008771 190 MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269 (554)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~ 269 (554)
. .....+. ...+...++++ ...++++.+||||||||++
T Consensus 77 --------------~------------------------~~~~~~~---~~~~~~~~~l~-~~~~~~~~~lS~G~~qrv~ 114 (213)
T PRK15177 77 --------------Y------------------------GLDGDEF---SHFCYQLTQLE-QCYTDRVSEYSVTMKTHLA 114 (213)
T ss_pred --------------c------------------------CCCHHHH---HHHHHHHhChh-HHhhchHhhcCHHHHHHHH
Confidence 0 0000000 11112234554 3457888999999999999
Q ss_pred HHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhH
Q 008771 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 270 LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~ 343 (554)
||+||+.+|++|||||||++||+.+...+.+.+.+ .+.|+|++|||+.++..+||+|++|++|++. +.|+..+
T Consensus 115 la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~ 189 (213)
T PRK15177 115 FAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKIT-MCEDLAQ 189 (213)
T ss_pred HHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEE-EeCCHHH
Confidence 99999999999999999999999998888876532 3578999999999999999999999999974 5565544
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=364.72 Aligned_cols=212 Identities=23% Similarity=0.333 Sum_probs=163.7
Q ss_pred ccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eE
Q 008771 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (554)
Q Consensus 96 ~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i 163 (554)
+.|+++||+|+|++ .++|+||||+|++||++||||++|||||||+++|.|+++|++|+|.++|.++ .|
T Consensus 1307 G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I 1386 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQF 1386 (1560)
T ss_pred CeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcc
Confidence 46999999999964 3599999999999999999999999999999999999999999999998653 59
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+||||++.+| +.||++|+.. +.+ .. -+.+...+ +..+ +...+..+-
T Consensus 1387 ~iVpQdp~LF-~gTIreNIdp-~~~-~s----deeI~~Al------------------------~~a~---l~~~I~~lp 1432 (1560)
T PTZ00243 1387 SMIPQDPVLF-DGTVRQNVDP-FLE-AS----SAEVWAAL------------------------ELVG---LRERVASES 1432 (1560)
T ss_pred eEECCCCccc-cccHHHHhCc-ccC-CC----HHHHHHHH------------------------HHCC---ChHHHhhCc
Confidence 9999999885 5699999842 100 00 00011111 1111 111121111
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccC-CCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQD-PDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~-p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~ 320 (554)
-|++... ...-.+||||||||++|||||+++ |+|||||||||+||+++.+.+.+.|++ .++|+|+|+|+++.+.
T Consensus 1433 --~Gldt~v-ge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~ 1509 (1560)
T PTZ00243 1433 --EGIDSRV-LEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVA 1509 (1560)
T ss_pred --ccccccc-cCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHH
Confidence 1332211 222357999999999999999995 899999999999999999999988864 4799999999999997
Q ss_pred hhcceEEEeeCCeeeeccCChhHHHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
. ||+|++|++|++.. .|++++.+.
T Consensus 1510 ~-~DrIlVLd~G~VvE-~Gt~~eLl~ 1533 (1560)
T PTZ00243 1510 Q-YDKIIVMDHGAVAE-MGSPRELVM 1533 (1560)
T ss_pred h-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 5 99999999999854 577777654
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=311.49 Aligned_cols=246 Identities=23% Similarity=0.366 Sum_probs=189.0
Q ss_pred HHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCcc
Q 008771 57 KSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAG 135 (554)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsG 135 (554)
+.+|+.--+++++|+...++++....+..++ -....+-|+++||+|.|. ++++|+||||++.+|+.+|||||+|+|
T Consensus 500 R~iQ~nfiDmEnmfdllkee~eVvd~P~a~p---l~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaG 576 (790)
T KOG0056|consen 500 RSIQKNFIDMENMFDLLKEEPEVVDLPGAPP---LKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAG 576 (790)
T ss_pred HHHHHhhhhHHHHHHHhhcCchhhcCCCCCC---ccccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCc
Confidence 5688888999999999988876655333222 223356799999999995 689999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhh----HHHHHHHHHHHHHHH
Q 008771 136 KTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAF----KEEMEIAGKLERVQK 201 (554)
Q Consensus 136 KSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~----~~~~~~~~~~~~~~~ 201 (554)
|||++|+|..++...+|.|.++|.++ .||.||||..+ ++.|+..|+..+- .++...+++...+..
T Consensus 577 KSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvL-FNdTI~yNIryak~~AsneevyaAAkAA~IHd 655 (790)
T KOG0056|consen 577 KSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVL-FNDTILYNIRYAKPSASNEEVYAAAKAAQIHD 655 (790)
T ss_pred hhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCccee-ecceeeeheeecCCCCChHHHHHHHHHhhHHH
Confidence 99999999999999999999999875 59999999887 5668988885431 111111111111111
Q ss_pred HHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeE
Q 008771 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281 (554)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lL 281 (554)
.+.. .++.++....+-| -.|||||||||||||+++..|.++
T Consensus 656 rIl~-----------------------------fPegY~t~VGERG----------LkLSGGEKQRVAiARtiLK~P~iI 696 (790)
T KOG0056|consen 656 RILQ-----------------------------FPEGYNTRVGERG----------LKLSGGEKQRVAIARTILKAPSII 696 (790)
T ss_pred HHhc-----------------------------Cchhhhhhhhhcc----------cccCCcchhhHHHHHHHhcCCcEE
Confidence 1000 0111111122222 269999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 282 LLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 282 lLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
+|||.||+||..+.+.+...|.+ .+.|-|+|.|+++.+-+ ||.|+++++|.+ .-.|+..+.+.+
T Consensus 697 lLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivn-AD~ILvi~~G~I-vErG~HeeLl~r 762 (790)
T KOG0056|consen 697 LLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVN-ADLILVISNGRI-VERGRHEELLKR 762 (790)
T ss_pred EEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheec-ccEEEEEeCCeE-eecCcHHHHHhc
Confidence 99999999999999999888765 58899999999999975 999999999987 456777766654
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=304.15 Aligned_cols=184 Identities=25% Similarity=0.350 Sum_probs=150.3
Q ss_pred EeEEEEeCCe-eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEE-----------EcCCC--------
Q 008771 101 ENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-----------KAKSN-------- 160 (554)
Q Consensus 101 ~~ls~~y~~~-~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~-----------~~~~~-------- 160 (554)
.|++|+|++. .+|+|+|+ |.+||+++|+|+||||||||+++|+|+++|++|+|. ++|.+
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 4789999765 59999995 999999999999999999999999999999999995 44532
Q ss_pred ----ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH
Q 008771 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (554)
Q Consensus 161 ----~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (554)
..++|++|.+..++ .++.+++.... .....+
T Consensus 83 ~~~~~~i~~~~~~~~~~~-~~~~~~i~~~l--------------------------------------------~~~~~~ 117 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIP-KAVKGKVGELL--------------------------------------------KKKDER 117 (255)
T ss_pred hhcccceeeecchhccCc-hHHHHHHHHHh--------------------------------------------chhHHH
Confidence 13678888776654 35555443210 011223
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEe
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiis 313 (554)
..+.++++.+|+.. ..++.+.+||||||||++|||||+.+|+++||||||++||+.++..+.+.++ +.+.|||+||
T Consensus 118 ~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiS 196 (255)
T cd03236 118 GKLDELVDQLELRH-VLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVE 196 (255)
T ss_pred HHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 45677888889863 4678899999999999999999999999999999999999999888877764 3579999999
Q ss_pred cCHHHHHhhcceEEEeeC
Q 008771 314 HDRAFLDQLCTKIVETEM 331 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~ 331 (554)
||++++..+||+|++|++
T Consensus 197 Hd~~~~~~~ad~i~~l~~ 214 (255)
T cd03236 197 HDLAVLDYLSDYIHCLYG 214 (255)
T ss_pred CCHHHHHHhCCEEEEECC
Confidence 999999999999999965
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=285.50 Aligned_cols=142 Identities=30% Similarity=0.408 Sum_probs=128.2
Q ss_pred EeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHH
Q 008771 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVRE 180 (554)
Q Consensus 101 ~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e 180 (554)
.|++++|+++.+++++ |+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|. .++|++|++
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~--~i~~~~q~~---------- 70 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI--TPVYKPQYI---------- 70 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE--EEEEEcccC----------
Confidence 5899999999999984 999999999999999999999999999999999999999864 477777531
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCC
Q 008771 181 EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF 260 (554)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 260 (554)
.|
T Consensus 71 ------------------------------------------------------------------------------~L 72 (177)
T cd03222 71 ------------------------------------------------------------------------------DL 72 (177)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 19
Q ss_pred ChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---C-CCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 261 SGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~-g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
|||||||++|||||+.+|+++||||||++||+.+++.+.+.+.+ . +.|+|+||||++++..+||+|++|+++.
T Consensus 73 SgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~ 149 (177)
T cd03222 73 SGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEP 149 (177)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCC
Confidence 99999999999999999999999999999999999888877643 3 4899999999999999999999998764
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=313.21 Aligned_cols=177 Identities=27% Similarity=0.394 Sum_probs=148.9
Q ss_pred EECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHH
Q 008771 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199 (554)
Q Consensus 128 lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 199 (554)
|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|++|++.+++.+||.+|+......
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~----------- 69 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKM----------- 69 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhh-----------
Confidence 689999999999999999999999999998743 2599999999988899999998643110
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCC
Q 008771 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279 (554)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~ 279 (554)
..........++.++++.+|+. ...++++.+|||||||||+|||||+.+|+
T Consensus 70 ----------------------------~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qRvalaraL~~~p~ 120 (325)
T TIGR01187 70 ----------------------------RKVPRAEIKPRVLEALRLVQLE-EFADRKPHQLSGGQQQRVALARALVFKPK 120 (325)
T ss_pred ----------------------------cCCCHHHHHHHHHHHHHHcCCc-chhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 0001122345677889999996 46789999999999999999999999999
Q ss_pred eEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 280 LLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 280 lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+|||||||++||+.++..+.+.|++ .|.|+|+||||++++..+||+|++|++|++. ..|+.+++.
T Consensus 121 lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~-~~g~~~~~~ 189 (325)
T TIGR01187 121 ILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIA-QIGTPEEIY 189 (325)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 9999999999999999999887743 4899999999999999999999999999974 556666544
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=335.29 Aligned_cols=205 Identities=24% Similarity=0.374 Sum_probs=173.4
Q ss_pred ccEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------
Q 008771 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------- 160 (554)
++|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 46999999999963 479999999999999999999999999999999999999999999998743
Q ss_pred ---ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
..++|++|++.+++..|+.||+...... ......+.++
T Consensus 83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~---------------------------------------~~~~~~~~~~ 123 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVY---------------------------------------AGLERKQRLL 123 (648)
T ss_pred HHhccEEEEeCCcccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHH
Confidence 2589999999888889999987531100 0001122345
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEec
Q 008771 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISH 314 (554)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisH 314 (554)
++.++++.+|+. +..++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+++++ .+.|+|+|||
T Consensus 124 ~~~~~l~~lgl~-~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH 202 (648)
T PRK10535 124 RAQELLQRLGLE-DRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202 (648)
T ss_pred HHHHHHHHCCCh-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 678889999996 457889999999999999999999999999999999999999999999888753 5899999999
Q ss_pred CHHHHHhhcceEEEeeCCeeeeccCChh
Q 008771 315 DRAFLDQLCTKIVETEMGVSRTYEGNYS 342 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~~~~G~~~ 342 (554)
+++++. .||++++|++|++. ..|..+
T Consensus 203 ~~~~~~-~~d~i~~l~~G~i~-~~g~~~ 228 (648)
T PRK10535 203 DPQVAA-QAERVIEIRDGEIV-RNPPAQ 228 (648)
T ss_pred CHHHHH-hCCEEEEEECCEEE-eecCcc
Confidence 999886 69999999999985 444444
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=291.65 Aligned_cols=196 Identities=25% Similarity=0.433 Sum_probs=154.0
Q ss_pred eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------eEEEEe-cccccccCccHHH
Q 008771 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLS-QEFEVSMSRTVRE 180 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------~i~~v~-Q~~~~~~~~tv~e 180 (554)
.++.||||+|++|+++|++|+|||||||++|+|+|++.|++|.|.++|..- ++++|+ |...+.....+.+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 489999999999999999999999999999999999999999999986421 122211 1111111111111
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCC
Q 008771 181 EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF 260 (554)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 260 (554)
- +. +......++.+...++.+.+.+-++++ ...+.+++.|
T Consensus 118 s--------------------------------------~~-v~~~Iy~Ipd~~F~~r~~~l~eiLdl~-~~lk~~vr~L 157 (325)
T COG4586 118 S--------------------------------------LE-VLKLIYEIPDDEFAERLDFLTEILDLE-GFLKWPVRKL 157 (325)
T ss_pred h--------------------------------------HH-HHHHHHhCCHHHHHHHHHHHHHHhcch-hhhhhhhhhc
Confidence 0 00 011112345555667777778888886 4568899999
Q ss_pred ChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceEEEeeCCeeee
Q 008771 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336 (554)
Q Consensus 261 SGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~ 336 (554)
|-|||+|+.||.+|+++|+||+|||||-+||+.++..+.+++++ ++.||+++||+++-+..+||||++|+.|++ +
T Consensus 158 SlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gql-v 236 (325)
T COG4586 158 SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQL-V 236 (325)
T ss_pred cchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcE-e
Confidence 99999999999999999999999999999999999999888864 689999999999999999999999999997 7
Q ss_pred ccCChhHHHHH
Q 008771 337 YEGNYSQYVLE 347 (554)
Q Consensus 337 ~~G~~~~~~~~ 347 (554)
|+|+..++.++
T Consensus 237 ~dg~l~~l~~~ 247 (325)
T COG4586 237 FDGTLAQLQEQ 247 (325)
T ss_pred ecccHHHHHHH
Confidence 99988776654
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=357.91 Aligned_cols=211 Identities=21% Similarity=0.354 Sum_probs=162.2
Q ss_pred ccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eE
Q 008771 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (554)
Q Consensus 96 ~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i 163 (554)
+.|+++||+++|++ .++|+||||+|++||++||||+||||||||+++|+|+++ .+|+|.++|.++ +|
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhce
Confidence 56999999999963 679999999999999999999999999999999999997 799999998653 59
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+||||+|.++ ..||++|+.. +.. .. -+.+...+ +... +...+..+-
T Consensus 1295 s~IpQdp~LF-~GTIR~NLdp-~~~-~t----deei~~aL------------------------~~~~---L~~~i~~lp 1340 (1490)
T TIGR01271 1295 GVIPQKVFIF-SGTFRKNLDP-YEQ-WS----DEEIWKVA------------------------EEVG---LKSVIEQFP 1340 (1490)
T ss_pred EEEeCCCccC-ccCHHHHhCc-ccC-CC----HHHHHHHH------------------------HHCC---CHHHHHhCc
Confidence 9999999885 4699999832 110 00 00000000 0111 111111111
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~ 321 (554)
. |++... ...-..||||||||++|||||+.+|+||||||||++||..+...+.+.|++ .++|||+|||+++.+..
T Consensus 1341 ~--GLdt~v-~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~ 1417 (1490)
T TIGR01271 1341 D--KLDFVL-VDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE 1417 (1490)
T ss_pred c--cccccc-ccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 1 232211 122347999999999999999999999999999999999999999988865 47999999999999975
Q ss_pred hcceEEEeeCCeeeeccCChhHHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||+|++|++|++..+ |++.+.+.
T Consensus 1418 -~DrIlvL~~G~ivE~-g~p~~Ll~ 1440 (1490)
T TIGR01271 1418 -CQQFLVIEGSSVKQY-DSIQKLLN 1440 (1490)
T ss_pred -CCEEEEEECCEEEEe-CCHHHHHc
Confidence 999999999998665 66666654
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=269.30 Aligned_cols=213 Identities=20% Similarity=0.378 Sum_probs=171.8
Q ss_pred ccEEEEeEEEEeCC---------eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC------
Q 008771 96 SGVKLENISKSYKG---------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------ 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~---------~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~------ 160 (554)
+.++++|+++.|.. ..+++.|||++++|+.+||||.||||||||.|+|+|.++|++|+|.+++..
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence 56899999999843 248999999999999999999999999999999999999999999999853
Q ss_pred ----ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH
Q 008771 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (554)
Q Consensus 161 ----~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (554)
..|-++||+|+-.++. +-++... ++.+..+ .-.+......
T Consensus 83 ~~R~k~IRMiFQDpnts~NP--Rl~iGqi-------------------------------Ld~PL~l---~T~~~~~~R~ 126 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNP--RLRIGQI-------------------------------LDFPLRL---NTDLEPEQRR 126 (267)
T ss_pred HhhhhheeeeecCCccccCh--hhhhhhH-------------------------------hcchhhh---cccCChHHHH
Confidence 3699999998643322 2222111 1100000 0112233345
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEE
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVII 312 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIii 312 (554)
+++-+.|..+||-++..+-++..||-||||||+|||||+.+|+++|.||..++||...+..+.++. .+.|.+.|+|
T Consensus 127 ~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV 206 (267)
T COG4167 127 KQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYV 206 (267)
T ss_pred HHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEE
Confidence 678888999999999999999999999999999999999999999999999999999988887753 3579999999
Q ss_pred ecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+.++..+..++|.|++|+.|+++.| |...+.+
T Consensus 207 ~QhlG~iKHi~D~viVM~EG~vvE~-G~t~~v~ 238 (267)
T COG4167 207 TQHIGMIKHISDQVLVMHEGEVVER-GSTADVL 238 (267)
T ss_pred echhhHhhhhcccEEEEecCceeec-CChhhhh
Confidence 9999999999999999999998766 4444433
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=276.42 Aligned_cols=195 Identities=31% Similarity=0.395 Sum_probs=155.3
Q ss_pred eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecc-cccccCccHHHHHHHhhHH
Q 008771 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE-FEVSMSRTVREEFMSAFKE 188 (554)
Q Consensus 110 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~-~~~~~~~tv~e~~~~~~~~ 188 (554)
.++|+||||+|.+||++||||+||||||||+|+|+|.++|++|+|.+.| +|+++..- ..+.+.+|.+||+...-.
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G---~v~~li~lg~Gf~pelTGreNi~l~~~- 115 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG---KVAPLIELGAGFDPELTGRENIYLRGL- 115 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcc---eEehhhhcccCCCcccchHHHHHHHHH-
Confidence 4699999999999999999999999999999999999999999999987 35543322 345678899999853100
Q ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHH
Q 008771 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268 (554)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv 268 (554)
...+...+++++++++.+.-.|. ++.+.|+.++|-||+-|+
T Consensus 116 --------------------------------------~~G~~~~ei~~~~~eIieFaELG-~fi~~PvktYSSGM~aRL 156 (249)
T COG1134 116 --------------------------------------ILGLTRKEIDEKVDEIIEFAELG-DFIDQPVKTYSSGMYARL 156 (249)
T ss_pred --------------------------------------HhCccHHHHHHHHHHHHHHHHHH-HHhhCchhhccHHHHHHH
Confidence 00122344555666665555553 678999999999999999
Q ss_pred HHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 269 ~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
++|.|...+||+||+||-.+..|+.-.+.-.+.+. +.+.|+|+||||++.+.++||++++|++|.+ .+.|..++..
T Consensus 157 aFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i-~~~G~~~~vi 235 (249)
T COG1134 157 AFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQI-RMEGSPEEVI 235 (249)
T ss_pred HHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEE-EEcCCHHHHH
Confidence 99999999999999999999999976554443332 3469999999999999999999999999998 4667777665
Q ss_pred HHH
Q 008771 346 LEK 348 (554)
Q Consensus 346 ~~~ 348 (554)
...
T Consensus 236 ~~Y 238 (249)
T COG1134 236 PAY 238 (249)
T ss_pred HHH
Confidence 543
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=270.67 Aligned_cols=209 Identities=24% Similarity=0.328 Sum_probs=175.6
Q ss_pred ccEEEEeEEEEeCCe-eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCC--CCCCceeEEEcCCCc-----------
Q 008771 96 SGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSNM----------- 161 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~-~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~--~~p~~G~I~~~~~~~----------- 161 (554)
.+++++||+.+-.++ .+|++|||+|++||+++|+||||||||||.++|+|. |.+++|+|.++|.++
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 468999999999885 999999999999999999999999999999999998 478999999999763
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
.|..-+|.|.-++..++.+.+..+....... ..+ ..+...++.+
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~-----------------------------------~~~-~~~~~~~~~e 125 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGA-----------------------------------RGI-LPEFIKELKE 125 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhcc-----------------------------------ccc-cHHHHHHHHH
Confidence 5888999999889999988775443210000 000 1123456778
Q ss_pred HhhhcCCCccccCCCCC-CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHH---HccCCCeEEEEecCHH
Q 008771 242 LMPELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRA 317 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~-~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~---l~~~g~tvIiisHd~~ 317 (554)
.++.++++..+++|.+. .||||||+|..|+.+++.+|++.|||||-||||.++.+.+.+. +++.+.++++|||...
T Consensus 126 ~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r 205 (251)
T COG0396 126 KAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR 205 (251)
T ss_pred HHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 88999999888999885 7999999999999999999999999999999999998887665 5567999999999999
Q ss_pred HHHhhc-ceEEEeeCCeeeeccCCh
Q 008771 318 FLDQLC-TKIVETEMGVSRTYEGNY 341 (554)
Q Consensus 318 ~l~~~~-d~i~~l~~g~~~~~~G~~ 341 (554)
.++.+- |++.+|-+|+++ ..|+.
T Consensus 206 ll~~i~pD~vhvl~~GrIv-~sG~~ 229 (251)
T COG0396 206 LLDYIKPDKVHVLYDGRIV-KSGDP 229 (251)
T ss_pred HHhhcCCCEEEEEECCEEE-ecCCH
Confidence 998653 999999999984 55655
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=307.86 Aligned_cols=211 Identities=27% Similarity=0.448 Sum_probs=182.7
Q ss_pred CCCccEEEEeEEEEeCCe-eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccc
Q 008771 93 SISSGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171 (554)
Q Consensus 93 ~~~~~i~~~~ls~~y~~~-~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~ 171 (554)
..++.|.++||+|.|.+. .++++++|-|..++++++|||||||||||||+|+|.+.|..|.|... ....+++..|+..
T Consensus 385 ~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~-~H~~~~~y~Qh~~ 463 (614)
T KOG0927|consen 385 IPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRH-SHNKLPRYNQHLA 463 (614)
T ss_pred CCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccc-ccccchhhhhhhH
Confidence 346789999999999876 59999999999999999999999999999999999999999999865 3345777777753
Q ss_pred c--ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 172 V--SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 172 ~--~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
. ..+.++.++++..+ ....-.+.++.+|.++||.
T Consensus 464 e~ldl~~s~le~~~~~~--------------------------------------------~~~~~~e~~r~ilgrfgLt 499 (614)
T KOG0927|consen 464 EQLDLDKSSLEFMMPKF--------------------------------------------PDEKELEEMRSILGRFGLT 499 (614)
T ss_pred hhcCcchhHHHHHHHhc--------------------------------------------cccchHHHHHHHHHHhCCC
Confidence 2 23345555543221 1122345678899999999
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEe
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l 329 (554)
.+....++++||+|||.||++|++++..|.+|||||||||||..++..+.++|.++.++||+||||..++.+++++|++.
T Consensus 500 gd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c 579 (614)
T KOG0927|consen 500 GDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVC 579 (614)
T ss_pred ccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeeeeccCChhHHHHHH
Q 008771 330 EMGVSRTYEGNYSQYVLEK 348 (554)
Q Consensus 330 ~~g~~~~~~G~~~~~~~~~ 348 (554)
+++.+..++|.|..|....
T Consensus 580 ~~~~~~~~~G~i~~yk~~l 598 (614)
T KOG0927|consen 580 ENGTVTKWDGDIEIYKEHL 598 (614)
T ss_pred ccCceeecCccHHHHHHHH
Confidence 9999999999999887643
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=258.89 Aligned_cols=191 Identities=25% Similarity=0.384 Sum_probs=163.2
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC---ceeEEEcCCCc--------eEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSNM--------KIAF 165 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~---~G~I~~~~~~~--------~i~~ 165 (554)
++.++||+...++..+|.++||+|.+||++-|+||+|||||||+..+.|.+.++ +|++.+++... .||+
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~Gi 81 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGI 81 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheee
Confidence 578999999999999999999999999999999999999999999999999874 89999987643 6999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
+||++.+|+..+|.+|+..++.... ........+...|++
T Consensus 82 LFQD~lLFphlsVg~Nl~fAlp~~~----------------------------------------KG~aRr~~a~aAL~~ 121 (213)
T COG4136 82 LFQDALLFPHLSVGQNLLFALPATL----------------------------------------KGNARRNAANAALER 121 (213)
T ss_pred eecccccccccccccceEEecCccc----------------------------------------ccHHHHhhHHHHHHH
Confidence 9999999999999999876543211 111123346677888
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHH----HHHHHHHHccCCCeEEEEecCHHHHHh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~----~~~l~~~l~~~g~tvIiisHd~~~l~~ 321 (554)
.|+. ...++.|.+||||||-||+|-|+|+..|++|+||||+|.||..- ++|+...++..|..+|+||||.+.+.
T Consensus 122 ~gL~-g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp- 199 (213)
T COG4136 122 SGLD-GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP- 199 (213)
T ss_pred hccc-hhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-
Confidence 8986 45688899999999999999999999999999999999999865 55666667788999999999999997
Q ss_pred hcceEEEe
Q 008771 322 LCTKIVET 329 (554)
Q Consensus 322 ~~d~i~~l 329 (554)
...||++|
T Consensus 200 agsrVie~ 207 (213)
T COG4136 200 AGSRVIEM 207 (213)
T ss_pred CCCeeeee
Confidence 57888876
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=267.29 Aligned_cols=153 Identities=37% Similarity=0.608 Sum_probs=128.2
Q ss_pred EEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHH
Q 008771 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVR 179 (554)
Q Consensus 100 ~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~ 179 (554)
++|+++.|++..+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++.+. . +. ...
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~--~---~~-------~~~ 69 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDI--A---KL-------PLE 69 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEc--c---cC-------CHH
Confidence 68999999888999999999999999999999999999999999999999999999986421 0 00 000
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCC
Q 008771 180 EEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259 (554)
Q Consensus 180 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~ 259 (554)
.+ ...+++ +.+
T Consensus 70 -~~------------------------------------------------------------~~~i~~--------~~q 80 (157)
T cd00267 70 -EL------------------------------------------------------------RRRIGY--------VPQ 80 (157)
T ss_pred -HH------------------------------------------------------------HhceEE--------Eee
Confidence 00 000111 112
Q ss_pred CChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 260 LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
|||||+||++||++++.+|+++||||||++||+.++.++.+.+++ .+.|+|++||+++++..+||+++++++|+
T Consensus 81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999999999999999999999999888753 36899999999999999999999998863
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=262.87 Aligned_cols=197 Identities=27% Similarity=0.400 Sum_probs=168.1
Q ss_pred ccEEEEeEEEEe-----CCe--eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------
Q 008771 96 SGVKLENISKSY-----KGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y-----~~~--~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------- 160 (554)
..|.++|++|+| ++. ++|+|+||+++.||+++|=||+|+|||||||+|.|.|.||+|+|.+....
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a 82 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhcc
Confidence 348999999999 332 69999999999999999999999999999999999999999999875321
Q ss_pred ----------ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhC
Q 008771 161 ----------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230 (554)
Q Consensus 161 ----------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (554)
..||||+|.....+..+..|.++.+.. ...+
T Consensus 83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll---------------------------------------~~gv 123 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLL---------------------------------------ARGV 123 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHH---------------------------------------HcCC
Confidence 258888888776666665555443210 0134
Q ss_pred CcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCC
Q 008771 231 NLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDV 307 (554)
Q Consensus 231 ~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~ 307 (554)
+.+....++..+|..++++...+.-.|.++||||||||-|||.++.+-+||||||||+.||..+++.+.+++. ..|.
T Consensus 124 ~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~Ga 203 (235)
T COG4778 124 PREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGA 203 (235)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCc
Confidence 5566778899999999999999999999999999999999999999999999999999999999999999885 4699
Q ss_pred eEEEEecCHHHHHhhcceEEEeeC
Q 008771 308 PMVIISHDRAFLDQLCTKIVETEM 331 (554)
Q Consensus 308 tvIiisHd~~~l~~~~d~i~~l~~ 331 (554)
++|=|=||.+.=+.+|||++.+..
T Consensus 204 AlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 204 ALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred eEEEeeccHHHHHHHhhheeeccc
Confidence 999999999999999999998854
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=259.11 Aligned_cols=203 Identities=28% Similarity=0.438 Sum_probs=167.4
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------- 160 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------- 160 (554)
.+.+++.++++.|++..-.+||||.+.+||+.||||++|||||||+++|++-+.|++|+|.+...+
T Consensus 4 ~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 4 KPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred CcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 457999999999999999999999999999999999999999999999999999999999875321
Q ss_pred -----ceEEEEecccccccCccH--HHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcc
Q 008771 161 -----MKIAFLSQEFEVSMSRTV--REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (554)
Q Consensus 161 -----~~i~~v~Q~~~~~~~~tv--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (554)
..-|+|.|+|.--..++| --|+-.-. + .++ .-..-
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERl---m---------------------a~G--------------~RHYG 125 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERL---M---------------------AIG--------------ARHYG 125 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhH---H---------------------hhh--------------hhhhh
Confidence 147999999854333333 22331100 0 000 00112
Q ss_pred cHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeE
Q 008771 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPM 309 (554)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tv 309 (554)
.+.+.+..+|+++.++....+..|.++||||+||+.|||-|+..|.++++||||-+||......|.++++ +.+.++
T Consensus 126 ~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~ 205 (258)
T COG4107 126 NIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205 (258)
T ss_pred hHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceE
Confidence 3566778889999998888888999999999999999999999999999999999999999888888764 579999
Q ss_pred EEEecCHHHHHhhcceEEEeeCCeee
Q 008771 310 VIISHDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 310 IiisHd~~~l~~~~d~i~~l~~g~~~ 335 (554)
||||||+..+.-+++|.++|.+|.++
T Consensus 206 viVTHDl~VarLla~rlmvmk~g~vv 231 (258)
T COG4107 206 VIVTHDLAVARLLADRLMVMKQGQVV 231 (258)
T ss_pred EEEechhHHHHHhhhcceeecCCCEe
Confidence 99999999999999999999999864
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=271.33 Aligned_cols=149 Identities=22% Similarity=0.288 Sum_probs=124.4
Q ss_pred eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----ceEEEEecccccccCccHHHHHHH
Q 008771 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEFEVSMSRTVREEFMS 184 (554)
Q Consensus 110 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----~~i~~v~Q~~~~~~~~tv~e~~~~ 184 (554)
+++|+|+||+|++|++++|+||||||||||+++|. +++|+|.+.+.. ..++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q---------------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ---------------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH----------------
Confidence 57999999999999999999999999999999996 378999887531 12334333
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhH
Q 008771 185 AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264 (554)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq 264 (554)
.++++.+|+.....++++.+|||||
T Consensus 68 -------------------------------------------------------~~~l~~~~L~~~~~~~~~~~LSgGq 92 (176)
T cd03238 68 -------------------------------------------------------LQFLIDVGLGYLTLGQKLSTLSGGE 92 (176)
T ss_pred -------------------------------------------------------HHHHHHcCCCccccCCCcCcCCHHH
Confidence 1124455665334678889999999
Q ss_pred HHHHHHHHHHccC--CCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceEEEeeCCee
Q 008771 265 QMRMSLGKILLQD--PDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (554)
Q Consensus 265 rqRv~LAraL~~~--p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i~~l~~g~~ 334 (554)
|||++||+||+.+ |++|||||||++||+.+++.+.+.+++ .|.|||+|||+++++. .||+|++|++|..
T Consensus 93 ~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~-~~d~i~~l~~g~~ 166 (176)
T cd03238 93 LQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS-SADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEECCCCC
Confidence 9999999999999 999999999999999999999887754 5899999999999984 7999999988654
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=291.51 Aligned_cols=247 Identities=21% Similarity=0.323 Sum_probs=185.8
Q ss_pred hHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCc
Q 008771 56 KKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGA 134 (554)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGs 134 (554)
.+.++.+...++++++..+.+.+.....+.+...+ -....+.+.+|+|.|. .+++|+++||++++|+.+++||++|+
T Consensus 223 Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~--~~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~ 300 (497)
T COG5265 223 YREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWP--VRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGA 300 (497)
T ss_pred HHHHHHhhhhHHHHHHhhccchhhccCCCCccccc--cccceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCC
Confidence 35678888899999888877765554333332221 2234589999999995 56899999999999999999999999
Q ss_pred cHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhH----HHHHHHHHHHHHH
Q 008771 135 GKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFK----EEMEIAGKLERVQ 200 (554)
Q Consensus 135 GKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~----~~~~~~~~~~~~~ 200 (554)
||||++++|..++.+++|.|.++|.++ -||.|||+..+ ++.|+..|+..+-. ++.....+..++
T Consensus 301 gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvL-FNDti~yni~ygr~~at~eev~aaa~~aqi- 378 (497)
T COG5265 301 GKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVL-FNDTIAYNIKYGRPDATAEEVGAAAEAAQI- 378 (497)
T ss_pred cHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCccccee-hhhhHHHHHhccCccccHHHHHHHHHHhhh-
Confidence 999999999999999999999999764 39999999887 55688888754321 111111111111
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCe
Q 008771 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280 (554)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~l 280 (554)
...+..+.+.+. .....|. -.|||||||||+|||+++.+|++
T Consensus 379 -----------------------------------~~fi~~lP~gy~--t~Vgerg-lklSggekqrvaiar~ilk~p~i 420 (497)
T COG5265 379 -----------------------------------HDFIQSLPEGYD--TGVGERG-LKLSGGEKQRVAIARTILKNPPI 420 (497)
T ss_pred -----------------------------------hHHHHhCchhhh--cccchhe-eeccCchHHHHHHHHHHhcCCCE
Confidence 111111111111 1111222 26999999999999999999999
Q ss_pred EeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 281 LLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 281 LlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
|+|||.||+||..+.+.+...|+. .|.|.++|.|+++.+.. ||.|++|++|+++ -.|...+.+.
T Consensus 421 l~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~-adeiivl~~g~i~-erg~h~~ll~ 486 (497)
T COG5265 421 LILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID-ADEIIVLDNGRIV-ERGTHEELLA 486 (497)
T ss_pred EEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC-CceEEEeeCCEEE-ecCcHHHHHH
Confidence 999999999999999999988864 68999999999999976 9999999999984 4576665554
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=333.54 Aligned_cols=195 Identities=23% Similarity=0.286 Sum_probs=137.3
Q ss_pred cHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc---cCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCC
Q 008771 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL---QDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDV 307 (554)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~---~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~ 307 (554)
.+..++ ++|+.+||.....++++.+|||||+|||+||++|+ .+|++|||||||++||+..++.|.++|+ +.|.
T Consensus 785 ~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~ 863 (1809)
T PRK00635 785 SIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGH 863 (1809)
T ss_pred HHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 445566 47889999643368899999999999999999997 6999999999999999999999888764 4589
Q ss_pred eEEEEecCHHHHHhhcceEEEee------CCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 008771 308 PMVIISHDRAFLDQLCTKIVETE------MGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN 381 (554)
Q Consensus 308 tvIiisHd~~~l~~~~d~i~~l~------~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (554)
|||+||||++++ .+||+|++|. +|++ .+.|+.+++..... .... + ++...
T Consensus 864 TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~i-v~~Gtpeel~~~~s-~t~~----~---------l~~~l-------- 919 (1809)
T PRK00635 864 TVVIIEHNMHVV-KVADYVLELGPEGGNLGGYL-LASCSPEELIHLHT-PTAK----A---------LRPYL-------- 919 (1809)
T ss_pred EEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEE-EEeCCHHHHHhccC-chHH----H---------HHHHh--------
Confidence 999999999999 7899999996 4554 56777665432100 0000 0 00000
Q ss_pred chhhHHHHHHHHHHHHhhhhccccccccceeeccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCC
Q 008771 382 SGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGC 461 (554)
Q Consensus 382 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGs 461 (554)
.... ..+ .+. +. .... ++..++++.+.....|+++||+|++|++++|+|+|||
T Consensus 920 -----------~~~~-----~~~------~~~-~~---~~~~-l~~~~i~i~~~~~~~lk~isl~i~~gei~~itG~nGs 972 (1809)
T PRK00635 920 -----------SSPQ-----ELP------YLP-DP---SPKP-PVPADITIKNAYQHNLKHIDLSLPRNALTAVTGPSAS 972 (1809)
T ss_pred -----------hccc-----ccc------ccc-cc---cccc-cccceEEEeccccccccceeEEecCCcEEEEECCCCC
Confidence 0000 000 000 00 0011 3445666665544579999999999999999999999
Q ss_pred cHHHHHHHHhCCCCCCceEEEEC
Q 008771 462 GKSTLLKLIMGLEKPRGGEVLLG 484 (554)
Q Consensus 462 GKSTLlk~L~G~~~p~~G~i~~~ 484 (554)
|||||+..+ ++. .|.+.+.
T Consensus 973 GKStL~~~~--L~~--~G~~~~~ 991 (1809)
T PRK00635 973 GKHSLVFDI--LYA--AGNIAYA 991 (1809)
T ss_pred ChhHHHHHH--HHh--hccEeee
Confidence 999987766 332 7777664
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=267.62 Aligned_cols=209 Identities=25% Similarity=0.346 Sum_probs=162.8
Q ss_pred cEEEEeEEEEeC-----CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------
Q 008771 97 GVKLENISKSYK-----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (554)
Q Consensus 97 ~i~~~~ls~~y~-----~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------- 161 (554)
++.+.|+.+.|. .+++|+++||+|.+|+++.|||.||||||||+++|+|-+.|++|+|.++|.+.
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence 356778888773 24699999999999999999999999999999999999999999999998653
Q ss_pred eEEEEecccc--cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 162 KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 162 ~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
.++.|+|+|. .++.+||.||+..+.... +.. .+... + ........
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~Rg-----~~r----gl~~~---------l---------------n~~~~~~f 127 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESRG-----KKR----GLSSA---------L---------------NERRRSSF 127 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhcC-----ccc----ccchh---------h---------------hHHHHHHH
Confidence 3788999984 568899999987542110 000 00000 0 00111222
Q ss_pred HHHhhhc--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHH----HHccCCCeEEEEe
Q 008771 240 SKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG----YLGKQDVPMVIIS 313 (554)
Q Consensus 240 ~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~----~l~~~g~tvIiis 313 (554)
.+.+..+ ||+ ..++.++.-|||||||-++|+.|-+..|+||+|||-|++|||.+.+.+.+ ++.+.+.|.+|||
T Consensus 128 ~~~l~~l~lgLe-nrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVT 206 (263)
T COG1101 128 RERLARLGLGLE-NRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVT 206 (263)
T ss_pred HHHHhhcccchh-hhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEe
Confidence 3334443 443 35577788999999999999999999999999999999999998877765 4567899999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeee-ccC
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRT-YEG 339 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~-~~G 339 (554)
|+++.+..+.+|.++|++|+++. +.|
T Consensus 207 Hnm~~Al~yG~RlImLh~G~IvlDv~g 233 (263)
T COG1101 207 HNMEDALDYGNRLIMLHSGKIVLDVTG 233 (263)
T ss_pred ccHHHHHhhCCeEEEEeCCeEEEEccc
Confidence 99999999999999999999864 444
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=320.07 Aligned_cols=199 Identities=28% Similarity=0.341 Sum_probs=164.6
Q ss_pred CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC---ceeEEEcCCCc-------eEEEEecccccccCccH
Q 008771 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSNM-------KIAFLSQEFEVSMSRTV 178 (554)
Q Consensus 109 ~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~---~G~I~~~~~~~-------~i~~v~Q~~~~~~~~tv 178 (554)
++++|+|+|++|++||+++|+||||||||||+++|+|..+|. +|+|.++|... .+|||+|++.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999999999999999999999999999999885 89999998642 58999999998889999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCC
Q 008771 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (554)
Q Consensus 179 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~ 258 (554)
+||+..... +. .. ..+..++..++++++++.+|+.+ ..+..+.
T Consensus 117 ~e~l~f~~~---------------~~--~~-------------------~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg 159 (617)
T TIGR00955 117 REHLMFQAH---------------LR--MP-------------------RRVTKKEKRERVDEVLQALGLRK-CANTRIG 159 (617)
T ss_pred HHHHHHHHh---------------cC--CC-------------------CCCCHHHHHHHHHHHHHHcCchh-cCcCccC
Confidence 999864211 00 00 00111234557888999999964 4466665
Q ss_pred ------CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHH-HHHhhcceEEE
Q 008771 259 ------SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA-FLDQLCTKIVE 328 (554)
Q Consensus 259 ------~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~-~l~~~~d~i~~ 328 (554)
.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|++ .|.|+|+++|++. .+.+.||+|++
T Consensus 160 ~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~l 239 (617)
T TIGR00955 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIIL 239 (617)
T ss_pred CCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEE
Confidence 5999999999999999999999999999999999999988887753 5899999999985 77889999999
Q ss_pred eeCCeeeeccCChhHHH
Q 008771 329 TEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 329 l~~g~~~~~~G~~~~~~ 345 (554)
|++|++ .|.|++++..
T Consensus 240 l~~G~~-v~~G~~~~~~ 255 (617)
T TIGR00955 240 MAEGRV-AYLGSPDQAV 255 (617)
T ss_pred eeCCeE-EEECCHHHHH
Confidence 999987 5788877654
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=339.80 Aligned_cols=207 Identities=24% Similarity=0.311 Sum_probs=169.4
Q ss_pred ccEEEEeEEEEeC----CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC---CCceeEEEcCCCc------e
Q 008771 96 SGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE---PDSGNVIKAKSNM------K 162 (554)
Q Consensus 96 ~~i~~~~ls~~y~----~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~---p~~G~I~~~~~~~------~ 162 (554)
..++++||++.|+ ++.+|+|||++|++||++||+||||||||||+++|+|..+ |++|+|.++|.+. .
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 3589999999995 4579999999999999999999999999999999999997 7899999998542 5
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
+|||+|++.+++..||+|++..... +.. . ......+..++++++
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~---------------l~~-~--------------------~~~~~~~~~~~v~~~ 881 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAY---------------LRQ-P--------------------KSVSKSEKMEYVEEV 881 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHH---------------hCC-C--------------------CCCCHHHHHHHHHHH
Confidence 8999999888888999999853210 000 0 001112234567888
Q ss_pred hhhcCCCccccCCCCC----CCChhHHHHHHHHHHHccCCC-eEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEec
Q 008771 243 MPELGFTADDGDRLVA----SFSSGWQMRMSLGKILLQDPD-LLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISH 314 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~----~LSGGqrqRv~LAraL~~~p~-lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisH 314 (554)
++.+|+. +..++.+. .|||||||||+||++|+.+|+ ||||||||+|||..+...+.+.|++ .|.|||+++|
T Consensus 882 l~~l~L~-~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H 960 (1394)
T TIGR00956 882 IKLLEME-SYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIH 960 (1394)
T ss_pred HHHcCCh-hhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 9999986 45577766 799999999999999999997 9999999999999999998888753 5899999999
Q ss_pred CHHH-HHhhcceEEEeeCC-eeeeccCC
Q 008771 315 DRAF-LDQLCTKIVETEMG-VSRTYEGN 340 (554)
Q Consensus 315 d~~~-l~~~~d~i~~l~~g-~~~~~~G~ 340 (554)
+++. +.+.+|+|++|++| ++ .|.|+
T Consensus 961 ~~~~~~~~~~D~vl~L~~GG~i-v~~G~ 987 (1394)
T TIGR00956 961 QPSAILFEEFDRLLLLQKGGQT-VYFGD 987 (1394)
T ss_pred CCCHHHHHhcCEEEEEcCCCEE-EEECC
Confidence 9986 45679999999987 65 45554
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=330.96 Aligned_cols=208 Identities=21% Similarity=0.294 Sum_probs=167.9
Q ss_pred ccEEEEeEEEEeC-------------CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC--CceeEEEcCCC
Q 008771 96 SGVKLENISKSYK-------------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSN 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~-------------~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p--~~G~I~~~~~~ 160 (554)
..+.++||++.++ .+.+|+|||++|++|++++|+|+|||||||||++|+|..++ .+|+|.++|.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 3589999998873 23699999999999999999999999999999999999763 78999998853
Q ss_pred c-------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcc
Q 008771 161 M-------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (554)
Q Consensus 161 ~-------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (554)
. .+|||+|++.+++..||+|++..... +. .. ......
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~---------------lr--~~-------------------~~~~~~ 989 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAF---------------LR--LP-------------------KEVSKE 989 (1470)
T ss_pred CChHHhhhheEEEccccccCCCCcHHHHHHHHHH---------------hC--CC-------------------CCCCHH
Confidence 2 48999999888889999999853210 00 00 000112
Q ss_pred cHHHHHHHHhhhcCCCccccCCCC-----CCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---C
Q 008771 234 TLDAKVSKLMPELGFTADDGDRLV-----ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q 305 (554)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~-----~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~ 305 (554)
+..++++++++.+||.+ ..++.+ ..|||||||||+||++|+.+|+||+|||||+|||+.+...+.+.|++ .
T Consensus 990 ~~~~~v~~vl~~lgL~~-~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~ 1068 (1470)
T PLN03140 990 EKMMFVDEVMELVELDN-LKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1068 (1470)
T ss_pred HHHHHHHHHHHHCCChh-HhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 23456788899999863 446654 58999999999999999999999999999999999999998887753 5
Q ss_pred CCeEEEEecCHH-HHHhhcceEEEeeC-CeeeeccCCh
Q 008771 306 DVPMVIISHDRA-FLDQLCTKIVETEM-GVSRTYEGNY 341 (554)
Q Consensus 306 g~tvIiisHd~~-~l~~~~d~i~~l~~-g~~~~~~G~~ 341 (554)
|.|||+++|+++ .+.+.||++++|++ |++ .|.|+.
T Consensus 1069 g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~-v~~G~~ 1105 (1470)
T PLN03140 1069 GRTVVCTIHQPSIDIFEAFDELLLMKRGGQV-IYSGPL 1105 (1470)
T ss_pred CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEE-EEECCc
Confidence 899999999998 46788999999986 665 466653
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=255.23 Aligned_cols=181 Identities=26% Similarity=0.375 Sum_probs=150.2
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------eEEEEe
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLS 167 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------~i~~v~ 167 (554)
+++.+|++..-+.+.+|.++||++.+||.+-|.||||||||||||+|+|+.+|++|+|.+++.+. .+-|+-
T Consensus 2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhh
Confidence 46788999888899999999999999999999999999999999999999999999999987543 234555
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
-.+.+-..+|+.||+.+.- .+....-...+.+.+..+|
T Consensus 82 H~~giK~eLTa~ENL~F~~------------------------------------------~~~~~~~~~~i~~Al~~vg 119 (209)
T COG4133 82 HQPGIKTELTALENLHFWQ------------------------------------------RFHGSGNAATIWEALAQVG 119 (209)
T ss_pred ccccccchhhHHHHHHHHH------------------------------------------HHhCCCchhhHHHHHHHcC
Confidence 5556667788998875320 0001112345667788899
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~ 320 (554)
|. +..|.++.+||-|||+||+|||.+++.+++.||||||++||...+..|...+. ..|+.||.+||..-.+.
T Consensus 120 L~-g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 120 LA-GLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred cc-cccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 85 56799999999999999999999999999999999999999999999988875 36899999999976654
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.7e-32 Score=312.47 Aligned_cols=247 Identities=23% Similarity=0.353 Sum_probs=183.1
Q ss_pred HHHHHHhhhHHHHhccCcchhhhhhhccccC-CCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCC
Q 008771 57 KSIAKAQSDVESLFSSSADEFENKKYSNKQS-NTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNG 133 (554)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NG 133 (554)
..+.....++||+.+..+.+.+ ........ ++..=+..+.|+++|++.+|.. ..||+||||+|++||++||||+.|
T Consensus 1098 ~elEn~m~SVERv~eY~~~~~E-~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTG 1176 (1381)
T KOG0054|consen 1098 SELENNMVSVERVLEYTDIPSE-APLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTG 1176 (1381)
T ss_pred HHHHhcchhhhHHHHHhcCCCC-CCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCC
Confidence 3455666788999887664433 00000011 1111144577999999999954 379999999999999999999999
Q ss_pred ccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 008771 134 AGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL 203 (554)
Q Consensus 134 sGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~ 203 (554)
||||||+.+|-++.+|.+|+|.+||.++ +++.+||||.+ |+.||+.|+- ++.+.
T Consensus 1177 aGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvL-FsGTvR~NLD-Pf~e~-------------- 1240 (1381)
T KOG0054|consen 1177 AGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVL-FSGTVRFNLD-PFDEY-------------- 1240 (1381)
T ss_pred CCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCce-ecCccccccC-ccccc--------------
Confidence 9999999999999999999999999764 69999999988 6779999972 22110
Q ss_pred hhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEee
Q 008771 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLL 283 (554)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlL 283 (554)
.|.+. +++++...+...+.+.- .||+.. ....-.++|-||||.++|||||+++++||+|
T Consensus 1241 ----sD~~I--------------W~ALe~~~Lk~~v~~~p--~~Ld~~-v~egG~N~SvGQRQLlCLARALLr~skILvL 1299 (1381)
T KOG0054|consen 1241 ----SDDEI--------------WEALERCQLKDVVSSLP--GGLDSE-VSEGGENFSVGQRQLLCLARALLRKSKILVL 1299 (1381)
T ss_pred ----CHHHH--------------HHHHHHhChHHHHhhCC--cCCCce-ecCCCccCChHHHHHHHHHHHHhccCCEEEE
Confidence 00000 00011111222222211 123221 2223368999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChh
Q 008771 284 DEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYS 342 (554)
Q Consensus 284 DEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~ 342 (554)
||+|++.|+++-..+.+.+++ .++|||.|.|++..+.+ ||||+||++|++..|+-++.
T Consensus 1300 DEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~ 1359 (1381)
T KOG0054|consen 1300 DEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAE 1359 (1381)
T ss_pred ecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEeecCChHH
Confidence 999999999999999998876 48999999999999986 99999999999999876654
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=262.82 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=84.2
Q ss_pred HHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCC--CeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEec
Q 008771 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISH 314 (554)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisH 314 (554)
.++++.+|+.....++++.+|||||+|||+||+||+.+| ++|||||||++||+.++..+.+.++ +.|.|+|+|||
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH 197 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 457888999754578999999999999999999999998 5999999999999999999888764 45899999999
Q ss_pred CHHHHHhhcceEEEe------eCCeee
Q 008771 315 DRAFLDQLCTKIVET------EMGVSR 335 (554)
Q Consensus 315 d~~~l~~~~d~i~~l------~~g~~~ 335 (554)
|++++. +||+|++| ++|+++
T Consensus 198 ~~~~~~-~~d~i~~l~~~~~~~~G~iv 223 (226)
T cd03270 198 DEDTIR-AADHVIDIGPGAGVHGGEIV 223 (226)
T ss_pred CHHHHH-hCCEEEEeCCCccccCCEEE
Confidence 999984 89999999 777764
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=269.36 Aligned_cols=207 Identities=22% Similarity=0.427 Sum_probs=176.0
Q ss_pred CCCccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccc
Q 008771 93 SISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171 (554)
Q Consensus 93 ~~~~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~ 171 (554)
-.++.+-+.||+|.|+ .+++|++++|-|.-..++|||||||.||||||++|.|.+.|..|+.+-+ ...+||++.|+..
T Consensus 582 L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-hrL~iG~FdQh~~ 660 (807)
T KOG0066|consen 582 LNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-HRLRIGWFDQHAN 660 (807)
T ss_pred CCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-ceeeeechhhhhH
Confidence 3457789999999995 5689999999999999999999999999999999999999999998765 4578999999863
Q ss_pred --cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 172 --VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 172 --~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
+....|..|+++..|. --.+.+++.|..+||.
T Consensus 661 E~L~~Eetp~EyLqr~FN----------------------------------------------lpyq~ARK~LG~fGL~ 694 (807)
T KOG0066|consen 661 EALNGEETPVEYLQRKFN----------------------------------------------LPYQEARKQLGTFGLA 694 (807)
T ss_pred HhhccccCHHHHHHHhcC----------------------------------------------CChHHHHHHhhhhhhh
Confidence 2233455555432210 1134567788899997
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEe
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l 329 (554)
.+...-.+..|||||+-||+||-.-+..|||||||||||+||.+++..|.+.++++.+.|||||||-.++.+.--.+|++
T Consensus 695 sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwVv 774 (807)
T KOG0066|consen 695 SHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVV 774 (807)
T ss_pred hccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeeecCceEEEE
Confidence 66555677899999999999999999999999999999999999999999999999999999999999998877789999
Q ss_pred eCCeeeeccCChhHHHH
Q 008771 330 EMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 330 ~~g~~~~~~G~~~~~~~ 346 (554)
++..+-...|.|++|..
T Consensus 775 E~Q~i~eIdGdFeDYkk 791 (807)
T KOG0066|consen 775 ENQGIDEIDGDFEDYKK 791 (807)
T ss_pred ccCChhhccccHHHHHH
Confidence 98888889999999865
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-31 Score=272.04 Aligned_cols=210 Identities=25% Similarity=0.436 Sum_probs=179.8
Q ss_pred CCCccEEEEeEEEEeCCe--eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccc
Q 008771 93 SISSGVKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (554)
Q Consensus 93 ~~~~~i~~~~ls~~y~~~--~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~ 170 (554)
..++.+++.+|+|.|+.. .++.++++.+.--++++++|+||+||||++|++.|...|..|.+.+.+ ..+|+|.+|..
T Consensus 358 ~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-r~ri~~f~Qhh 436 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-RLRIKYFAQHH 436 (582)
T ss_pred CCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-cceecchhHhh
Confidence 456789999999999644 489999999999999999999999999999999999999999988774 56899999985
Q ss_pred ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc
Q 008771 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (554)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (554)
.-+.+..|... +.... .-.-..++.++..+..+|++.
T Consensus 437 vd~l~~~v~~v---------------------------------------d~~~~----~~pG~~~ee~r~hl~~~Gl~g 473 (582)
T KOG0062|consen 437 VDFLDKNVNAV---------------------------------------DFMEK----SFPGKTEEEIRRHLGSFGLSG 473 (582)
T ss_pred hhHHHHHhHHH---------------------------------------HHHHH----hCCCCCHHHHHHHHHhcCCCc
Confidence 43322222110 00000 011225778899999999999
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEee
Q 008771 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~ 330 (554)
+...+++..||||||-||++|.+...+|.+|+|||||||||.++...|...|+.+++.||+||||.+|+..+|+.+|+.+
T Consensus 474 ~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve 553 (582)
T KOG0062|consen 474 ELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVE 553 (582)
T ss_pred hhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEc
Confidence 98888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeccCChhHHHH
Q 008771 331 MGVSRTYEGNYSQYVL 346 (554)
Q Consensus 331 ~g~~~~~~G~~~~~~~ 346 (554)
+|++..+.|..++|..
T Consensus 554 ~g~vt~ieg~~~~yKk 569 (582)
T KOG0062|consen 554 DGKVTPIEGGIDKYKK 569 (582)
T ss_pred CCcEEeeeccHHHHHH
Confidence 9999999998877654
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=299.38 Aligned_cols=206 Identities=28% Similarity=0.468 Sum_probs=179.1
Q ss_pred ccEEEEeEEEEeCCee-eEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------eE
Q 008771 96 SGVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KI 163 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~-~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-----------~i 163 (554)
..+.++|+++.|+.+. +++++||.|++||+.|+.|+|||||||++++|+|..+|++|++.+.|.+. .+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 4589999999998776 99999999999999999999999999999999999999999999977543 39
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
||+||+..+...+|.+|.+... .+...+...++.+.+..++
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~---------------------------------------arlrG~~~~di~~~v~~ll 683 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFY---------------------------------------ARLRGLPRSDIGSAIEKLL 683 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHH---------------------------------------HHHcCCChhHHHHHHHHHH
Confidence 9999999998899999876421 1112344456677799999
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~ 320 (554)
+.+||. +..++++..+|||+|+|+.+|.|++.+|++++|||||+|+||.+++.+++.++ +.|+.+|++||.+++++
T Consensus 684 ~~~~L~-~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~E 762 (885)
T KOG0059|consen 684 RLVGLG-PYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAE 762 (885)
T ss_pred HHcCCh-hhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 999996 46788899999999999999999999999999999999999999999998874 34559999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChh
Q 008771 321 QLCTKIVETEMGVSRTYEGNYS 342 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~ 342 (554)
.+|||+.+|.+|++.- -|+..
T Consensus 763 aLCtR~aImv~G~l~c-iGs~q 783 (885)
T KOG0059|consen 763 ALCTRTAIMVIGQLRC-IGSPQ 783 (885)
T ss_pred HHhhhhheeecCeeEE-ecChH
Confidence 9999999999998743 35544
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=290.02 Aligned_cols=180 Identities=20% Similarity=0.318 Sum_probs=134.5
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCC--CeEeecCCCCCCCHHHHHHHHHHHc---cCCCeE
Q 008771 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPM 309 (554)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tv 309 (554)
+..++. +|..+||....+++++.+|||||+|||+||++|+.+| ++|||||||++||+...+.|.+.|+ +.|.||
T Consensus 466 i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TV 544 (943)
T PRK00349 466 IRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTL 544 (943)
T ss_pred HHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 445554 7889999644479999999999999999999999997 9999999999999999999988764 468999
Q ss_pred EEEecCHHHHHhhcceEEEe------eCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCch
Q 008771 310 VIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSG 383 (554)
Q Consensus 310 IiisHd~~~l~~~~d~i~~l------~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (554)
|+|+||++++. .||+|++| ++|++ .+.|++.++........ ..| +. +
T Consensus 545 IvVeH~~~~i~-~aD~vi~LgpgaG~~~G~i-v~~g~~~e~~~~~~~l~----~~~----------------l~-----~ 597 (943)
T PRK00349 545 IVVEHDEDTIR-AADYIVDIGPGAGVHGGEV-VASGTPEEIMKNPNSLT----GQY----------------LS-----G 597 (943)
T ss_pred EEEeCCHHHHH-hCCEEEEeccccCCCCCEE-eeccCHHHHhcChhhee----ehh----------------hc-----c
Confidence 99999999996 59999999 77776 67788776533110000 000 00 0
Q ss_pred hhHHHHHHHHHHHHhhhhccccccccceeeccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcH
Q 008771 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGK 463 (554)
Q Consensus 384 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGK 463 (554)
+. ....+ .. . .....+.|++++++. ..++++||+|++||+++|+|+|||||
T Consensus 598 ~~--------------~~~~~--~~-------~-~~~~~~~L~v~~l~~-----~~L~~isl~Ip~GeivgVtGvsGSGK 648 (943)
T PRK00349 598 KK--------------KIEVP--KE-------R-RKGNGKFLKLKGARE-----NNLKNVDVEIPLGKFTCVTGVSGSGK 648 (943)
T ss_pred cc--------------ccccc--cc-------c-cCCCcceEEecCCcc-----CCcCceEEEEeCCCEEEEEcCCCCCH
Confidence 00 00000 00 0 011235788998873 25899999999999999999999999
Q ss_pred HHHHHHHh
Q 008771 464 STLLKLIM 471 (554)
Q Consensus 464 STLlk~L~ 471 (554)
|||++.+.
T Consensus 649 STLl~~~l 656 (943)
T PRK00349 649 STLINETL 656 (943)
T ss_pred HHHHHHHH
Confidence 99998763
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=281.57 Aligned_cols=209 Identities=27% Similarity=0.371 Sum_probs=173.9
Q ss_pred cEEEEeEEEEeCC-----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC---CceeEEEcCCC-------c
Q 008771 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP---DSGNVIKAKSN-------M 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~-----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p---~~G~I~~~~~~-------~ 161 (554)
.+.++|++....+ +.+|+|||.++++||+.||+||+||||||||++|+|.... .+|+|.++|.. .
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~ 104 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRK 104 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhh
Confidence 4788898887743 5799999999999999999999999999999999999975 79999999932 3
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
.+|||.|+..+++.+||+|.+..... +. ....+...+.++++++
T Consensus 105 ~s~yV~QdD~l~~~LTV~EtL~f~A~---------------lr---------------------lp~~~~~~~k~~~V~~ 148 (613)
T KOG0061|consen 105 ISGYVQQDDVLLPTLTVRETLRFSAL---------------LR---------------------LPSSLSKEEKRERVEE 148 (613)
T ss_pred eeEEEcccccccccccHHHHHHHHHH---------------hc---------------------CCCCCCHHHHHHHHHH
Confidence 59999999999999999998864211 00 0001233556788999
Q ss_pred HhhhcCCCccccCCCCC-----CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEe
Q 008771 242 LMPELGFTADDGDRLVA-----SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~-----~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiis 313 (554)
++.++|+. .-.+..+. .+|||||+||+||.-|+.+|.||+|||||+|||..+...+.+.|+ +.|+|||++=
T Consensus 149 vi~~LgL~-~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tI 227 (613)
T KOG0061|consen 149 VISELGLE-KCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTI 227 (613)
T ss_pred HHHHcCCh-hhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEE
Confidence 99999997 45566665 599999999999999999999999999999999999888887765 3499999999
Q ss_pred cCH-HHHHhhcceEEEeeCCeeeeccCChhH
Q 008771 314 HDR-AFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 314 Hd~-~~l~~~~d~i~~l~~g~~~~~~G~~~~ 343 (554)
|.+ ..+.+..|++++|..|+. .|.|...+
T Consensus 228 HQPss~lf~lFD~l~lLs~G~~-vy~G~~~~ 257 (613)
T KOG0061|consen 228 HQPSSELFELFDKLLLLSEGEV-VYSGSPRE 257 (613)
T ss_pred eCCcHHHHHHHhHhhhhcCCcE-EEecCHHH
Confidence 997 577788999999999965 68786653
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-29 Score=283.99 Aligned_cols=171 Identities=23% Similarity=0.308 Sum_probs=127.3
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCC--CeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDR 316 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~ 316 (554)
.|..+||....+++++.+|||||+|||+||++|+.+| ++|||||||++||+.....|.+.|+ +.|.|||+|+||+
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 3777888643468999999999999999999999986 8999999999999999999888764 4689999999999
Q ss_pred HHHHhhcceEEEe------eCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHH
Q 008771 317 AFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEK 390 (554)
Q Consensus 317 ~~l~~~~d~i~~l------~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (554)
+++. .||+|++| ++|++ .+.|++.++...... . ...+. .++.
T Consensus 550 ~~i~-~aD~vi~LgpgaG~~~G~I-v~~g~~~el~~~~~~------------------l---t~~~l----~~~~----- 597 (924)
T TIGR00630 550 ETIR-AADYVIDIGPGAGIHGGEV-VASGTPEEILANPDS------------------L---TGQYL----SGKK----- 597 (924)
T ss_pred HHHh-hCCEEEEecccccCCCCEE-eeccCHHHHhcCchh------------------e---eeecc----cccc-----
Confidence 9996 89999999 77765 567776543221000 0 00000 0000
Q ss_pred HHHHHHHhhhhccccccccceeeccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHH
Q 008771 391 KLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468 (554)
Q Consensus 391 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk 468 (554)
....+ . .......++|++++++. ..|+++||+|+.||+++|+|+||||||||++
T Consensus 598 ---------~~~~~--~--------~~~~~~~~~l~l~~~~~-----~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 598 ---------KIEVP--K--------ERRPGNGKFLTLKGARE-----NNLKNITVSIPLGLFTCITGVSGSGKSTLIN 651 (924)
T ss_pred ---------ccccc--c--------cccCCCcceEEEEeCcc-----CCcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 00000 0 00011234789999874 2589999999999999999999999999998
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-30 Score=230.85 Aligned_cols=124 Identities=38% Similarity=0.629 Sum_probs=102.3
Q ss_pred EEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEEEecccccccCccHHHHH
Q 008771 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFLSQEFEVSMSRTVREEF 182 (554)
Q Consensus 113 l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~v~Q~~~~~~~~tv~e~~ 182 (554)
|+||||+|++|++++|+|+||||||||+++|+|.++|++|+|.+++.+ ..++|++|++.++...||.++.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~ 80 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE 80 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999999999999999999999999999999999998743 2599999998888888998872
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC---ccccCCCCCC
Q 008771 183 MSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT---ADDGDRLVAS 259 (554)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~~~~~~~~~~ 259 (554)
.. .++.++++.+++. ....++.+..
T Consensus 81 ~~----------------------------------------------------~~~~~~l~~l~~~~~~~~~~~~~~~~ 108 (137)
T PF00005_consen 81 SD----------------------------------------------------ERIEEVLKKLGLEDLLDRKIGQRASS 108 (137)
T ss_dssp HH----------------------------------------------------HHHHHHHHHTTHGGGTGSBGTSCGGG
T ss_pred cc----------------------------------------------------ccccccccccccccccccccccccch
Confidence 10 1122233333332 2334555599
Q ss_pred CChhHHHHHHHHHHHccCCCeEeecCCCC
Q 008771 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTN 288 (554)
Q Consensus 260 LSGGqrqRv~LAraL~~~p~lLlLDEPt~ 288 (554)
|||||||||+||+||+.+|++||||||||
T Consensus 109 LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 109 LSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp SCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred hhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 99999999999999999999999999997
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-29 Score=243.06 Aligned_cols=155 Identities=19% Similarity=0.281 Sum_probs=122.1
Q ss_pred EceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCc---------eeEEEcCCC-------ceEEEEecccccccCcc
Q 008771 114 KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS---------GNVIKAKSN-------MKIAFLSQEFEVSMSRT 177 (554)
Q Consensus 114 ~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~---------G~I~~~~~~-------~~i~~v~Q~~~~~~~~t 177 (554)
++++|++.+| +++|+||||||||||+++|+|+.+|.. |++.+.+.+ ..|+|+||++..++...
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~ 92 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII 92 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE
Confidence 6689999999 999999999999999999999987653 345555433 36999999987652100
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCC
Q 008771 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (554)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~ 257 (554)
...++.++++. .+..++++
T Consensus 93 ---------------------------------------------------------~~~~~~~~l~~----~~~~~~~~ 111 (197)
T cd03278 93 ---------------------------------------------------------SQGDVSEIIEA----PGKKVQRL 111 (197)
T ss_pred ---------------------------------------------------------ehhhHHHHHhC----CCccccch
Confidence 00122233333 12446788
Q ss_pred CCCChhHHHHHHHHHHHc----cCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeC
Q 008771 258 ASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEM 331 (554)
Q Consensus 258 ~~LSGGqrqRv~LAraL~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~ 331 (554)
.+||||||||++||++|+ .+|+++||||||++||+.....+.+.+++ .+.|||+||||++++ ..||+++.+..
T Consensus 112 ~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~-~~~d~v~~~~~ 190 (197)
T cd03278 112 SLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTM-EAADRLYGVTM 190 (197)
T ss_pred hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHH-hhcceEEEEEe
Confidence 999999999999999986 46799999999999999999999988764 368999999999988 47999999853
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=292.50 Aligned_cols=169 Identities=21% Similarity=0.355 Sum_probs=126.0
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCC--CeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRA 317 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~ 317 (554)
|..+||.....++.+.+|||||+|||+||+||+.+| ++|||||||++||+...+.|.+.|+ +.|.|||+||||++
T Consensus 460 L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~ 539 (1809)
T PRK00635 460 LIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQ 539 (1809)
T ss_pred HHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH
Confidence 457788644468999999999999999999999999 8999999999999999999888765 46899999999999
Q ss_pred HHHhhcceEEEee------CCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Q 008771 318 FLDQLCTKIVETE------MGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKK 391 (554)
Q Consensus 318 ~l~~~~d~i~~l~------~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (554)
++ ++||+|++|. +|++ .+.|+++++....... ...+....
T Consensus 540 vi-~~aDrVi~L~pGag~~gG~I-v~~G~~~eil~~~~~l---------------------~~~~l~~~----------- 585 (1809)
T PRK00635 540 MI-SLADRIIDIGPGAGIFGGEV-LFNGSPREFLAKSDSL---------------------TAKYLRQE----------- 585 (1809)
T ss_pred HH-HhCCEEEEEcCCcccCCCEE-EEecCHHHHhhChHHH---------------------HHHHhcCc-----------
Confidence 55 7899999997 4454 5678776654311100 00000000
Q ss_pred HHHHHHhhhhccccccccceeeccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHH
Q 008771 392 LERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468 (554)
Q Consensus 392 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk 468 (554)
...+. +.........+++++++. ..|+++||+|++||+++|+|+||||||||++
T Consensus 586 ---------~~~~~---------~~~~~~~~~~L~l~~~~~-----~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 586 ---------LTIPI---------PEKRTNSLGTLTLSKATK-----HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred ---------ccccC---------cccccCCCCeEEEecccc-----CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 00000 000011234688888873 3689999999999999999999999999999
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=235.26 Aligned_cols=128 Identities=34% Similarity=0.464 Sum_probs=114.3
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eEEE
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPNY 492 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----------~~~y 492 (554)
.|+++|++++|++..+|+++|++|.+||+++|+||+|||||||||+|.++..|++|+|.++|.++ ++|+
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 58999999999999999999999999999999999999999999999999999999999998544 3689
Q ss_pred EecccccCCCCCCCHHHHHHhhcc---c----CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAE---D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~---~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|+. .|+|.+||.||+..+.. . ...+.+..+|+++|+ .+..+.+|..|||||||||||
T Consensus 82 VFQ~f--nLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL-~~ka~~yP~qLSGGQqQRVAI 147 (240)
T COG1126 82 VFQQF--NLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGL-ADKADAYPAQLSGGQQQRVAI 147 (240)
T ss_pred ecccc--cccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCc-hhhhhhCccccCcHHHHHHHH
Confidence 99985 58999999999987742 1 223567889999999 467999999999999999986
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-28 Score=239.56 Aligned_cols=218 Identities=19% Similarity=0.236 Sum_probs=137.5
Q ss_pred eeEEceeEEEECCCEEEEECCCCccHHHHHHHHH--------CC--CCCCceeEEEcCCC-ceEEEEecccccc-cCccH
Q 008771 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA--------GQ--EEPDSGNVIKAKSN-MKIAFLSQEFEVS-MSRTV 178 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~--------G~--~~p~~G~I~~~~~~-~~i~~v~Q~~~~~-~~~tv 178 (554)
.-|+|||++|+.|..++|+|.+|||||||++.+. +. ..|..++...+... ..+-+|.|.|.-. +.-++
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999999652 11 12444443322211 2467888876322 12222
Q ss_pred ------HHHHHHhhHH---HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 179 ------REEFMSAFKE---EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 179 ------~e~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
++++...|.+ -..+. .+.+.-... .....+...-...+...+. ..+ .. ..++.++|+.+||.
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~--~~~l~~~~~-g~~i~~v~~ltv~e~~~~~---~~~--~~-~~~~~~~L~~vgL~ 159 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYN--RETLEVRYK-GKSIADVLDMTVEEALEFF---ENI--PK-IARKLQTLCDVGLG 159 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccC--HHHHhcCcC-CCCHHHHhcCCHHHHHHHH---Hhh--hh-HHHHHHHHHHcCCc
Confidence 2222211100 00000 000000000 0000000000000110110 011 11 24567789999997
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccC---CCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhc
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQD---PDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~---p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~~~ 323 (554)
....++++.+|||||+||++||++|+.+ |+++||||||++||+..+..+.+.++ +.|.|+|+||||++++. .|
T Consensus 160 ~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~a 238 (261)
T cd03271 160 YIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CA 238 (261)
T ss_pred hhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hC
Confidence 5457899999999999999999999996 79999999999999999999888765 35899999999999996 69
Q ss_pred ceEEEe------eCCeeeeccC
Q 008771 324 TKIVET------EMGVSRTYEG 339 (554)
Q Consensus 324 d~i~~l------~~g~~~~~~G 339 (554)
|+|++| ++|++ .+.|
T Consensus 239 D~ii~Lgp~~g~~~G~i-v~~G 259 (261)
T cd03271 239 DWIIDLGPEGGDGGGQV-VASG 259 (261)
T ss_pred CEEEEecCCcCCCCCEE-EEeC
Confidence 999999 67776 3444
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-28 Score=236.66 Aligned_cols=129 Identities=38% Similarity=0.498 Sum_probs=114.7
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eEEEEeccc
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQNQ 497 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----~~~y~~Q~~ 497 (554)
..++++++++.|+...+|+++||+|.+||+++|+||+||||||||++|+|+.+|++|+|.++|..+ .++|++|++
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 358899999999988899999999999999999999999999999999999999999999998765 468999985
Q ss_pred ccCCCCCCCHHHHHHhhccc------CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 498 AEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 498 ~~~l~~~~tv~e~l~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.|.|.+||+||+..+... ...+.+.++|+.+|+. +..+++|++|||||||||+|
T Consensus 82 --~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~-~~~~~~P~qLSGGMrQRVai 141 (248)
T COG1116 82 --ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA-GFEDKYPHQLSGGMRQRVAI 141 (248)
T ss_pred --cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc-chhhcCccccChHHHHHHHH
Confidence 588999999999866432 1234689999999995 47899999999999999985
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-28 Score=239.13 Aligned_cols=182 Identities=20% Similarity=0.288 Sum_probs=125.8
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHH----------------CCCCCCce--------e
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA----------------GQEEPDSG--------N 153 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~----------------G~~~p~~G--------~ 153 (554)
|+++|. ++|++..++.+++ |++++|+||||||||||+++|+ +++.+.+| +
T Consensus 4 i~~~nf-ksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~ 77 (243)
T cd03272 4 VIIQGF-KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVE 77 (243)
T ss_pred EEEeCc-cCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEE
Confidence 678887 5788888898887 7899999999999999999998 44555555 4
Q ss_pred EEEcCCC-------------ceEEEEecccccccC-ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 008771 154 VIKAKSN-------------MKIAFLSQEFEVSMS-RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219 (554)
Q Consensus 154 I~~~~~~-------------~~i~~v~Q~~~~~~~-~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (554)
|.+++.+ ..++|++|++.++.. .|..+.. ..+. ..
T Consensus 78 i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~-~~l~-----------------~~------------- 126 (243)
T cd03272 78 IIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVM-NLLE-----------------SA------------- 126 (243)
T ss_pred EEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHH-HHHH-----------------Hc-------------
Confidence 4444311 126777777665542 3443321 1100 00
Q ss_pred HHHHHHHHHhCCccc-----HHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc----cCCCeEeecCCCCCC
Q 008771 220 FDLLQRKAQAVNLDT-----LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHL 290 (554)
Q Consensus 220 ~~~~~~~~~~~~~~~-----~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~----~~p~lLlLDEPt~~L 290 (554)
.+.... ...++.++ +++. ...++++.+|||||+||++||+||+ .+|++|||||||++|
T Consensus 127 ---------gl~~~~~~~~~~qg~i~~l---~~l~-~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~l 193 (243)
T cd03272 127 ---------GFSRSNPYYIVPQGKINSL---TNMK-QDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAAL 193 (243)
T ss_pred ---------CCCCCCCcEEEEcCchHHh---hhcc-ccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCC
Confidence 000000 01112222 2232 2346778999999999999999996 368999999999999
Q ss_pred CHHHHHHHHHHHccC--CCeEEEEecCHHHHHhhcceEEEee
Q 008771 291 DLDTIEWLEGYLGKQ--DVPMVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 291 D~~~~~~l~~~l~~~--g~tvIiisHd~~~l~~~~d~i~~l~ 330 (554)
|+.+.+.+.+.|++. +.++|++||+.+ +.++||+|++|.
T Consensus 194 d~~~~~~~~~~l~~~~~~~~ii~~~h~~~-~~~~~d~i~~l~ 234 (243)
T cd03272 194 DAQYRTAVANMIKELSDGAQFITTTFRPE-LLEVADKFYGVK 234 (243)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHhhCCEEEEEE
Confidence 999999998887653 678888888866 557999999984
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-27 Score=253.62 Aligned_cols=191 Identities=29% Similarity=0.438 Sum_probs=152.7
Q ss_pred CccEEEEeEEEEeCC-eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccc
Q 008771 95 SSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~ 173 (554)
...|+++|++..-++ ...+++.||+|++||.+-|.|+||||||||+|+|+|+-|.-+|+|.+. .+..+-|+||.|.+
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P-~~~~~lflpQ~PY~- 467 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP-ADSALLFLPQRPYL- 467 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC-CCCceEEecCCCCC-
Confidence 567999999999864 689999999999999999999999999999999999999999999887 45568999999987
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc---
Q 008771 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA--- 250 (554)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~--- 250 (554)
+..|.+|.++.+-... +--++.+.++|.++||++
T Consensus 468 p~GtLre~l~YP~~~~-------------------------------------------~~~d~~l~~vL~~vgL~~L~~ 504 (604)
T COG4178 468 PQGTLREALCYPNAAP-------------------------------------------DFSDAELVAVLHKVGLGDLAE 504 (604)
T ss_pred CCccHHHHHhCCCCCC-------------------------------------------CCChHHHHHHHHHcCcHHHHH
Confidence 5559999886542110 001122233333333321
Q ss_pred --cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceE
Q 008771 251 --DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 251 --~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i 326 (554)
+..++--..||+||||||++||+|+++|++++|||.|++||+++...+.+.+++ .+.|||-|+|+.... .+.++.
T Consensus 505 rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~-~~h~~~ 583 (604)
T COG4178 505 RLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLW-NFHSRQ 583 (604)
T ss_pred HHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhH-HHHhhh
Confidence 011112247999999999999999999999999999999999999999999988 799999999998776 467777
Q ss_pred EEeeC
Q 008771 327 VETEM 331 (554)
Q Consensus 327 ~~l~~ 331 (554)
+.+.+
T Consensus 584 l~l~~ 588 (604)
T COG4178 584 LELLD 588 (604)
T ss_pred eeecc
Confidence 77754
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=232.74 Aligned_cols=182 Identities=19% Similarity=0.200 Sum_probs=127.6
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEE-CCCEEEEECCCCccHHHHHHHHHC-CCCCCceeEEEc---------CCCceEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVK-KGEKVGLVGVNGAGKTTQLRIIAG-QEEPDSGNVIKA---------KSNMKIAF 165 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~-~Ge~~~lvG~NGsGKSTLlk~i~G-~~~p~~G~I~~~---------~~~~~i~~ 165 (554)
.|+++|+. +|.+. .+|+|... +|++++|+|+||||||||+++|++ ++.+..+..... .....|++
T Consensus 5 ~i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (213)
T cd03279 5 KLELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSF 80 (213)
T ss_pred EEEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEE
Confidence 38899998 77554 45566654 589999999999999999999995 433443433321 11236889
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|+....+ ++..+. ... .+...+.+ .+..
T Consensus 81 ~f~~~~~~~--~~~r~~--gl~--------------------------------------------~~~~~~~~--~l~~ 110 (213)
T cd03279 81 TFQLGGKKY--RVERSR--GLD--------------------------------------------YDQFTRIV--LLPQ 110 (213)
T ss_pred EEEECCeEE--EEEEec--CCC--------------------------------------------HHHHHHhh--hhhh
Confidence 998864321 111110 000 00000000 0111
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHcc----------CCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEE
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQ----------DPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVII 312 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~----------~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIii 312 (554)
.++. ...++++.+|||||+||++||+||+. +|++|||||||++||+.+...+.+++++ .+.|+|+|
T Consensus 111 g~l~-~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~i 189 (213)
T cd03279 111 GEFD-RFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVI 189 (213)
T ss_pred cchH-HHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 1221 34467889999999999999999985 6799999999999999999988877643 47899999
Q ss_pred ecCHHHHHhhcceEEEeeCCe
Q 008771 313 SHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~g~ 333 (554)
|||++++..+||+|+++++|.
T Consensus 190 tH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 190 SHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred ECchHHHHhhCcEEEEEecCC
Confidence 999999999999999999875
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-27 Score=250.14 Aligned_cols=205 Identities=21% Similarity=0.365 Sum_probs=170.5
Q ss_pred CCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------e
Q 008771 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------K 162 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-----------~ 162 (554)
..+.++++|++.. ..++|+||++++||++||.|-=|||+|-|+++|.|..++++|+|.++|... .
T Consensus 260 ~~~~l~v~~l~~~----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 260 GEPVLEVRNLSGG----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred CCcEEEEecCCCC----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 3456888888743 268999999999999999999999999999999999999999999998632 5
Q ss_pred EEEEeccc---ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 163 IAFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 163 i~~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
|+|||.|- .++...+|.+|+..+.... . .... .++.....+.+
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~-------------~--------------------~~~~-~i~~~~e~~~~ 381 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRR-------------F--------------------SRRG-LIDRRKERALA 381 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhh-------------h--------------------cccc-ccChHHHHHHH
Confidence 99999874 5677889999985431000 0 0000 12233345567
Q ss_pred HHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCH
Q 008771 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDR 316 (554)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~ 316 (554)
+++...+++.....+.++.+||||.||||.|||.|+.+|+||||||||-|.|.-++..+.++++ +.|++||+||-++
T Consensus 382 ~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl 461 (500)
T COG1129 382 ERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL 461 (500)
T ss_pred HHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 7888889998778889999999999999999999999999999999999999999988888765 5799999999999
Q ss_pred HHHHhhcceEEEeeCCeeee
Q 008771 317 AFLDQLCTKIVETEMGVSRT 336 (554)
Q Consensus 317 ~~l~~~~d~i~~l~~g~~~~ 336 (554)
.++..+||||++|++|++.-
T Consensus 462 pEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 462 PELLGLSDRILVMREGRIVG 481 (500)
T ss_pred HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999853
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-27 Score=242.46 Aligned_cols=186 Identities=26% Similarity=0.438 Sum_probs=144.6
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccC
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~ 175 (554)
..++..++++.|++.. |+-=.=+|..||+++++||||-||||+.++|+|.++|++|. ..+.+|+|=||-....+.
T Consensus 341 ~lv~y~~~~k~~g~F~-L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~~vSyKPQyI~~~~~ 415 (591)
T COG1245 341 TLVEYPDLKKTYGDFK-LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDLKVSYKPQYISPDYD 415 (591)
T ss_pred eeeecchheeecCceE-EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----CccceEeecceeecCCCC
Confidence 3456666666666432 33234456678999999999999999999999999999998 356789999998877788
Q ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCC
Q 008771 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (554)
Q Consensus 176 ~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~ 255 (554)
.||.+.+....... ..+ .-...+++.-|.|+ ...++
T Consensus 416 gtV~~~l~~~~~~~-------------~~~------------------------------s~~~~ei~~pl~l~-~i~e~ 451 (591)
T COG1245 416 GTVEDLLRSAIRSA-------------FGS------------------------------SYFKTEIVKPLNLE-DLLER 451 (591)
T ss_pred CcHHHHHHHhhhhh-------------ccc------------------------------chhHHhhcCccchH-HHHhc
Confidence 89998775432110 000 00122345556664 46689
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHH----HccCCCeEEEEecCHHHHHhhcceEEEee
Q 008771 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY----LGKQDVPMVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 256 ~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~----l~~~g~tvIiisHd~~~l~~~~d~i~~l~ 330 (554)
++.+|||||.|||+||.+|..++|++|||||+++||.+.+-..... +.+.++|.++|.||+.+++.++||+++++
T Consensus 452 ~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 452 PVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred ccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 9999999999999999999999999999999999999877655444 44578999999999999999999999985
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=227.32 Aligned_cols=132 Identities=32% Similarity=0.501 Sum_probs=119.1
Q ss_pred ceEEEeeeeEecCCcc----ceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee---------
Q 008771 423 SVVTIKNLEFGYEDRL----LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~----~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~--------- 489 (554)
+.|+++|+++.|+... ++++|||+|.+||++||+|++|||||||+++|+|+.+|++|+|.++|..+.
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 4689999999998766 999999999999999999999999999999999999999999999995432
Q ss_pred --EEEEecccccCCCCCCCHHHHHHhhccc----CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 490 --PNYFEQNQAEALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 490 --~~y~~Q~~~~~l~~~~tv~e~l~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+.+++|+|...++|..||.+.|.++... ..+.++.++|..+|++.+.++|.|..|||||+||+||
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAI 152 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHH
Confidence 4589999999999999999999987542 2345689999999999999999999999999999985
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-27 Score=236.76 Aligned_cols=188 Identities=17% Similarity=0.235 Sum_probs=136.2
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC-ceeEEEcCC-------------CceE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKS-------------NMKI 163 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-~G~I~~~~~-------------~~~i 163 (554)
|.++|. ++|.+..++.+++ ..+++|||+||||||||+++|++++.+. .|++.+.+. ...|
T Consensus 6 ~~~~~f-~~~~~~~~~~~~~-----~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v 79 (251)
T cd03273 6 IILDGF-KSYATRTVISGFD-----PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASV 79 (251)
T ss_pred EEEeCc-cccCcCEeeccCC-----CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEE
Confidence 677777 6776655443332 4599999999999999999999999876 456665432 1268
Q ss_pred EEEecccc---------cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCC-cc
Q 008771 164 AFLSQEFE---------VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN-LD 233 (554)
Q Consensus 164 ~~v~Q~~~---------~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 233 (554)
++++|++. +.+..||.+++....... ..++ ..
T Consensus 80 ~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~--------------------------------------~~in~~~ 121 (251)
T cd03273 80 TIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNK--------------------------------------YLINGHR 121 (251)
T ss_pred EEEEEcCCcccCcccccCCceEEEEEEEEcCCceE--------------------------------------EEECCEE
Confidence 99999852 233556655542110000 0001 11
Q ss_pred cHHHHHHHHhhhcCCCc-------------------cccCCCCCCCChhHHHHHHHHHHHc----cCCCeEeecCCCCCC
Q 008771 234 TLDAKVSKLMPELGFTA-------------------DDGDRLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHL 290 (554)
Q Consensus 234 ~~~~~~~~~l~~lgl~~-------------------~~~~~~~~~LSGGqrqRv~LAraL~----~~p~lLlLDEPt~~L 290 (554)
...+++.++|+.+|+.. ...++++.+||||||||++||+||+ .+|++|||||||++|
T Consensus 122 ~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~l 201 (251)
T cd03273 122 AQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAAL 201 (251)
T ss_pred eeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCC
Confidence 23356666777777752 2346788999999999999999997 578999999999999
Q ss_pred CHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEee
Q 008771 291 DLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 291 D~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~ 330 (554)
|+..++++.+.|++ .|.|+|+|||+.+.+. .||+|+-+.
T Consensus 202 d~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~-~~d~v~~~~ 242 (251)
T cd03273 202 DLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFN-NANVLFRTR 242 (251)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEE
Confidence 99999999998864 4789999999976665 699998774
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=230.34 Aligned_cols=233 Identities=22% Similarity=0.313 Sum_probs=161.0
Q ss_pred HHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCCe-eeEEceeEEEECCCEEEEECCCCccH
Q 008771 58 SIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGK 136 (554)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~~-~~l~~isl~i~~Ge~~~lvG~NGsGK 136 (554)
++..|+.+.+++-+..-.++... -++..+.+. =..|+++|+.|.|..+ -=+..||++|++||++.|||.|||||
T Consensus 288 ~l~~AqvA~~kiakle~~~~~a~----~~~~q~~p~-~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGK 362 (546)
T COG4615 288 TLLTAQVAFNKIAKLELAPYKAD----FPRPQAFPD-WKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGK 362 (546)
T ss_pred HHHHHHHHHHHHHHhhcCCcccc----CCCCCcCCc-ccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcH
Confidence 35566666666644433332111 111111111 2459999999999765 56889999999999999999999999
Q ss_pred HHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHH--HHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHH
Q 008771 137 TTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREE--FMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214 (554)
Q Consensus 137 STLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (554)
|||+++++|+++|++|+|+++|.... ..+..++ +.++. ..|.-++.
T Consensus 363 ST~~~LLtGL~~PqsG~I~ldg~pV~------------~e~ledYR~LfSav--------------------FsDyhLF~ 410 (546)
T COG4615 363 STLAMLLTGLYQPQSGEILLDGKPVS------------AEQLEDYRKLFSAV--------------------FSDYHLFD 410 (546)
T ss_pred HHHHHHHhcccCCCCCceeECCccCC------------CCCHHHHHHHHHHH--------------------hhhHhhhH
Confidence 99999999999999999999986431 1122221 11110 00000000
Q ss_pred HHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcc----ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCC
Q 008771 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD----DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHL 290 (554)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~----~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~L 290 (554)
.++ ..+....++.+..+|+.+.+.+. +.+-.+-.||.|||+|+++.-||+-+-||++|||=-+.-
T Consensus 411 ~ll-----------~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQ 479 (546)
T COG4615 411 QLL-----------GPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQ 479 (546)
T ss_pred hhh-----------CCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccC
Confidence 000 00111234556666666655321 112234589999999999999999999999999999999
Q ss_pred CHHHHHHHHHH----HccCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccC
Q 008771 291 DLDTIEWLEGY----LGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEG 339 (554)
Q Consensus 291 D~~~~~~l~~~----l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G 339 (554)
||.-++++... |++.|+||+.||||-.... .|||++.+++|++....|
T Consensus 480 DPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~-~ADrll~~~~G~~~e~tg 531 (546)
T COG4615 480 DPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTG 531 (546)
T ss_pred ChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhh-hHHHHHHHhcCceeeccc
Confidence 99999998764 5789999999999966554 699999999999876655
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-27 Score=242.27 Aligned_cols=130 Identities=31% Similarity=0.494 Sum_probs=116.5
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEE
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYF 493 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~ 493 (554)
.+.++++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+..|++|+|.++|.++ .++++
T Consensus 3 ~~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~V 82 (352)
T COG3842 3 KPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMV 82 (352)
T ss_pred CceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccccee
Confidence 4579999999999988899999999999999999999999999999999999999999999999877 25899
Q ss_pred ecccccCCCCCCCHHHHHHhhcc-c--CC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAE-D--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~-~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|+. .|+|.+||.|||+++.. . .. ...+.++|+.+++. +..+|+|++|||||||||||
T Consensus 83 FQ~Y--ALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~-~~~~R~p~qLSGGQqQRVAL 147 (352)
T COG3842 83 FQSY--ALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLE-GFADRKPHQLSGGQQQRVAL 147 (352)
T ss_pred ecCc--ccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCch-hhhhhChhhhChHHHHHHHH
Confidence 9985 69999999999998865 1 11 23688999999996 47899999999999999986
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-27 Score=238.00 Aligned_cols=128 Identities=34% Similarity=0.474 Sum_probs=113.8
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEec
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q 495 (554)
.|+++|+++.|++..+++++||+|..||+++|+|||||||||||++|+|+++|++|+|.++|.++ .+++++|
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ 82 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQ 82 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeC
Confidence 48999999999875489999999999999999999999999999999999999999999999877 3689999
Q ss_pred ccccCCCCCCCHHHHHHhhccc------CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+. .|+|.+||++|++.+..- .....+++..+.+++. ..++|+|..|||||||||+|
T Consensus 83 ~y--ALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~-~lL~r~P~~LSGGQrQRVAl 144 (338)
T COG3839 83 NY--ALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE-HLLNRKPLQLSGGQRQRVAL 144 (338)
T ss_pred Cc--cccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCCh-hHHhcCcccCChhhHHHHHH
Confidence 85 689999999999987542 2245688899999995 57999999999999999985
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-27 Score=227.11 Aligned_cols=131 Identities=34% Similarity=0.540 Sum_probs=113.5
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce-------eeEEEEec
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-------VLPNYFEQ 495 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~-------~~~~y~~Q 495 (554)
+.|+++|+++.|+..++++++||+|++||+++|+||||+|||||+|+|+|+++|.+|+|.+.|.+ .++||++|
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ 82 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ 82 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence 46899999999986579999999999999999999999999999999999999999999988754 36899999
Q ss_pred ccccCCCCCCCHHHHHHhhccc----------CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAED----------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~----------~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
...-...+..||.|-+..+... ...+.+.+.|+++|+. +..++++..|||||+|||.|
T Consensus 83 ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~LSGGQ~QRV~l 150 (254)
T COG1121 83 KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGELSGGQKQRVLL 150 (254)
T ss_pred ccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCcccccCcHHHHHHHH
Confidence 7655566788999998765321 1136789999999995 68899999999999999864
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-26 Score=222.94 Aligned_cols=168 Identities=23% Similarity=0.351 Sum_probs=124.2
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHH----CCCCCCceeEEE-------cCCCceEEEE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA----GQEEPDSGNVIK-------AKSNMKIAFL 166 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~----G~~~p~~G~I~~-------~~~~~~i~~v 166 (554)
|+++|+. +| .+..++++.+| +++|+|+||||||||+++|. |..+|++|.+.. ......|+++
T Consensus 4 l~l~nfr-~~-----~~~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~ 76 (204)
T cd03240 4 LSIRNIR-SF-----HERSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLA 76 (204)
T ss_pred EEEECcc-cc-----cCceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEE
Confidence 5666764 33 12234566677 99999999999999999995 999998886541 1123479999
Q ss_pred ecccc-----cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 167 SQEFE-----VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 167 ~Q~~~-----~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
+|++. .....|+.+++.... +..+.+
T Consensus 77 f~~~~~~~~~v~r~~~~~~~~~~~~-------------------------------------------------~~~~~~ 107 (204)
T cd03240 77 FENANGKKYTITRSLAILENVIFCH-------------------------------------------------QGESNW 107 (204)
T ss_pred EEeCCCCEEEEEEEhhHhhceeeec-------------------------------------------------hHHHHH
Confidence 99872 222336666553210 001111
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHH------HHHHHHHccCCCeEeecCCCCCCCHHHHH-HHHHHHcc---C-CCeEE
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMR------MSLGKILLQDPDLLLLDEPTNHLDLDTIE-WLEGYLGK---Q-DVPMV 310 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqR------v~LAraL~~~p~lLlLDEPt~~LD~~~~~-~l~~~l~~---~-g~tvI 310 (554)
.+ ++++.+||+||+|| ++||+|++.+|+++||||||++||+..+. ++.+++++ . +.|+|
T Consensus 108 ~~----------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~ii 177 (204)
T cd03240 108 PL----------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLI 177 (204)
T ss_pred HH----------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEE
Confidence 11 56678999999996 78999999999999999999999999999 88887743 2 78999
Q ss_pred EEecCHHHHHhhcceEEEeeCC
Q 008771 311 IISHDRAFLDQLCTKIVETEMG 332 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l~~g 332 (554)
+|||+++++. .||+|++|++.
T Consensus 178 iitH~~~~~~-~~d~i~~l~~~ 198 (204)
T cd03240 178 VITHDEELVD-AADHIYRVEKD 198 (204)
T ss_pred EEEecHHHHh-hCCEEEEEeeC
Confidence 9999999885 69999999643
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-25 Score=224.48 Aligned_cols=354 Identities=22% Similarity=0.347 Sum_probs=199.6
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-ceEEEEecc-cccccCccHHHHHHHhhHHHHHHHHHHHH
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-MKIAFLSQE-FEVSMSRTVREEFMSAFKEEMEIAGKLER 198 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-~~i~~v~Q~-~~~~~~~tv~e~~~~~~~~~~~~~~~~~~ 198 (554)
++|++.|+||.||.||||-+++++|-++|.-|.-...-.. ..++|.--. ..-++..-+.+++-......+ ...
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQy-----vd~ 172 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQY-----VDQ 172 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHH-----HHH
Confidence 4799999999999999999999999999987753211000 011211100 000011111111111100000 000
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCC
Q 008771 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278 (554)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p 278 (554)
+...... ..+..++..+ + .....+++..+.|. ...+|.+..|||||-||.+||.+.++++
T Consensus 173 ipr~~k~------~v~~~l~~~~---------~----r~~~~~~~~~~~L~-~~~~re~~~lsggelqrfaia~~~vq~a 232 (592)
T KOG0063|consen 173 IPRAVKG------TVGSLLDRKD---------E----RDNKEEVCDQLDLN-NLLDREVEQLSGGELQRFAIAMVCVQKA 232 (592)
T ss_pred HHHHHHH------HHHHHHHHHh---------h----cccHHHHHHHHHHh-hHHHhhhhhcccchhhhhhhhhhhhhhc
Confidence 0000000 0011111000 0 11233344444443 3457888999999999999999999999
Q ss_pred CeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHHhhcceEEEeeC--CeeeeccCChhHHHHHHHHHHH
Q 008771 279 DLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLCTKIVETEM--GVSRTYEGNYSQYVLEKAAWIE 353 (554)
Q Consensus 279 ~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd~~~l~~~~d~i~~l~~--g~~~~~~G~~~~~~~~~~~~~~ 353 (554)
|+.++|||.+.||+..+......+ -.-..-||+|.||++.++.+.|-|..+.. |..-+-.-+|+-
T Consensus 233 dvyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYGvp~aYGVVT~Pfsv---------- 302 (592)
T KOG0063|consen 233 DVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPFSV---------- 302 (592)
T ss_pred ceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEecCCccceEEEeccch----------
Confidence 999999999999998765444333 34567899999999999999999988853 211000111110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhhccccccccceeeccCCCCCCCceEEEeeeeEe
Q 008771 354 SQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFG 433 (554)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 433 (554)
++.++-+-.+-.. .++. -+......+.+...... +=+-..+.
T Consensus 303 ----------------r~giniFl~g~ip--------------ten~---rfR~~~l~f~~~~~~~~-----ek~~~~y~ 344 (592)
T KOG0063|consen 303 ----------------REGINIFLDGLIP--------------TENL---RFRPECLVFLASDLSSE-----DRRTGRYS 344 (592)
T ss_pred ----------------hhhhhhhhhccCC--------------cccc---cccchhheeeeccccch-----hhhhheec
Confidence 0000000000000 0000 00011112222211110 00111244
Q ss_pred cCC-ccceeceEEEEecCC-----EEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCceeeEEEEecccccCCCCCCC
Q 008771 434 YED-RLLFNRANLTIERGE-----KTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVLLGEHNVLPNYFEQNQAEALDLDKT 506 (554)
Q Consensus 434 y~~-~~~l~~vs~~i~~Ge-----~iaIvG~NGsGKSTLlk~L~G~~~p~~G-~i~~~~~~~~~~y~~Q~~~~~l~~~~t 506 (554)
|++ +..+-++.|.|..|| ++..+|.||.|||||+++++|.++|+.| +| +.+.+.|-+|-.. --...|
T Consensus 345 Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~----p~lnVSykpqkis--pK~~~t 418 (592)
T KOG0063|consen 345 YPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEI----PVLNVSYKPQKIS--PKREGT 418 (592)
T ss_pred cCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcc----cccceeccccccC--ccccch
Confidence 554 335667888888885 7899999999999999999999999876 34 2235678888632 235568
Q ss_pred HHHHHHhhcccC--CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 507 VLETVAEAAEDW--RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 507 v~e~l~~~~~~~--~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|++-+...-++. ...-+-...+.+.+ ....++.+..|||||+|||+|
T Consensus 419 vR~ll~~kIr~ay~~pqF~~dvmkpL~i-e~i~dqevq~lSggelQRval 467 (592)
T KOG0063|consen 419 VRQLLHTKIRDAYMHPQFVNDVMKPLQI-ENIIDQEVQGLSGGELQRVAL 467 (592)
T ss_pred HHHHHHHHhHhhhcCHHHHHhhhhhhhH-HHHHhHHhhcCCchhhHHHHH
Confidence 888775432211 12233445555555 346789999999999999985
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-27 Score=230.82 Aligned_cols=190 Identities=18% Similarity=0.212 Sum_probs=131.9
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCcc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~t 177 (554)
|+++|+. +|++..++++++| ++++|+||||||||||+++|.-..-.+...+ ...++++++|+..+++..|
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~----~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM----RQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred EEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHh----hhhhHHHHhcCCCCCCCCc
Confidence 7888986 8999999999998 8999999999999999999982211110000 1135788888877766667
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH--HHHHHhhhcCCCccccCC
Q 008771 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA--KVSKLMPELGFTADDGDR 255 (554)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~lgl~~~~~~~ 255 (554)
+.++.... ... ...+.+ . ...+....... ...++++.++++ +..++
T Consensus 76 ~~~~~~~~-~~~------------------~~~~~l----------~--~~g~~~~~~~~~v~~~~~~~~~~L~-~~~~~ 123 (212)
T cd03274 76 SCSVEVHF-QEI------------------IDKPLL----------K--SKGIDLDHNRFLILQGEVEQIAQMP-KKSWK 123 (212)
T ss_pred eEEEEEEE-EeC------------------CCHHHH----------H--HCCcCCCCCceEEcCCcEEEeeccc-ccccc
Confidence 66543211 000 000000 0 00000000000 124455667775 44577
Q ss_pred CCCCCChhHHHHHHHHHHHcc----CCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEe
Q 008771 256 LVASFSSGWQMRMSLGKILLQ----DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (554)
Q Consensus 256 ~~~~LSGGqrqRv~LAraL~~----~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l 329 (554)
++..||+|||||++||+|++. +|+++||||||++||+.++.++.+.+++ .+.|+|++||+. ++.++||+|++|
T Consensus 124 ~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~-~~~~~~d~v~~~ 202 (212)
T cd03274 124 NISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRN-NMFELADRLVGI 202 (212)
T ss_pred chhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcH-HHHHhCCEEEEE
Confidence 789999999999999999974 5899999999999999999999998864 367999999996 455789999998
Q ss_pred e
Q 008771 330 E 330 (554)
Q Consensus 330 ~ 330 (554)
.
T Consensus 203 ~ 203 (212)
T cd03274 203 Y 203 (212)
T ss_pred E
Confidence 5
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-27 Score=213.12 Aligned_cols=196 Identities=30% Similarity=0.360 Sum_probs=154.4
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v 166 (554)
+++++||+.. +-|-.+|.++..||++-+|||||||||||+-.++|++ |-+|+|.++|.+. .-+|+
T Consensus 3 l~qln~v~~~----tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYL 77 (248)
T COG4138 3 LMQLNDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYL 77 (248)
T ss_pred eeeecccccc----ccccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHH
Confidence 4678888753 2467789999999999999999999999999999998 5799999998753 24688
Q ss_pred ecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc
Q 008771 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (554)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (554)
.|+..-.+.+.|+.++.... +.......+..+...+
T Consensus 78 sQqq~p~f~mpV~~YL~L~q--------------------------------------------P~~~~a~~i~~i~~~L 113 (248)
T COG4138 78 SQQQTPPFAMPVWHYLTLHQ--------------------------------------------PDKTRTELLNDVAGAL 113 (248)
T ss_pred hhccCCcchhhhhhhhhhcC--------------------------------------------chHHHHHHHHHHHhhh
Confidence 88776667777777654211 1112233456667778
Q ss_pred CCCccccCCCCCCCChhHHHHHHHHHHHcc-----CC--CeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCH
Q 008771 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQ-----DP--DLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDR 316 (554)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~LAraL~~-----~p--~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd~ 316 (554)
+++ +.+.|.++.|||||-|||-||...+. || ++||||||-|+||+.....|...| ...|.+|||.+||+
T Consensus 114 ~l~-DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDL 192 (248)
T COG4138 114 ALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDL 192 (248)
T ss_pred ccc-chhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccch
Confidence 885 56789999999999999999988765 33 699999999999998776665554 56799999999999
Q ss_pred HHHHhhcceEEEeeCCeeeeccCChhH
Q 008771 317 AFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 317 ~~l~~~~d~i~~l~~g~~~~~~G~~~~ 343 (554)
+--.+.||+++.+..|++ ...|...+
T Consensus 193 NhTLrhA~~~wLL~rG~l-~~~G~~~e 218 (248)
T COG4138 193 NHTLRHAHRAWLLKRGKL-LASGRREE 218 (248)
T ss_pred hhHHHHHHHHHHHhcCeE-Eeecchhh
Confidence 998899999999999987 34554433
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-26 Score=225.95 Aligned_cols=128 Identities=36% Similarity=0.562 Sum_probs=111.6
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEEEE
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~y~ 493 (554)
.++++|++|.|+++.+++++||+|.+||+++|+||||||||||||+|+|+++|.+|+|.++|+++ ..+|+
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999876 36899
Q ss_pred ecccccCCCCCCCHHHHHHhhcc-------cCCHH---HHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAE-------DWRID---DIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~-------~~~~~---~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|.+ ...+..||+|-+..+.. .++.+ .+...|+.+++. +..+|++.+|||||||||.|
T Consensus 82 pQ~~--~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~-~la~r~~~~LSGGerQrv~i 149 (258)
T COG1120 82 PQSP--SAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE-HLADRPVDELSGGERQRVLI 149 (258)
T ss_pred ccCC--CCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH-HHhcCcccccChhHHHHHHH
Confidence 9986 45677899999876532 12332 477789999994 57899999999999999864
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-26 Score=219.42 Aligned_cols=127 Identities=31% Similarity=0.478 Sum_probs=114.1
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEEEEe
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYFE 494 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~y~~ 494 (554)
++++|+++.|+++.+++++||+|..||+++++||+||||||+||+|.++.+|++|+|+++|.++ ++||+-
T Consensus 2 I~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYvi 81 (309)
T COG1125 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVI 81 (309)
T ss_pred ceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhh
Confidence 7899999999999999999999999999999999999999999999999999999999999877 368999
Q ss_pred cccccCCCCCCCHHHHHHhhcc--cCCH----HHHHHHHhhCCCCh-hhhccccCcCChhhhhccc
Q 008771 495 QNQAEALDLDKTVLETVAEAAE--DWRI----DDIKGLLGRCNFKA-DMLDRKVSLLSGGEKIILL 553 (554)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~~--~~~~----~~~~~~L~~~~l~~-~~~~~~~~~LSGGek~Rl~ 553 (554)
|. ..|+|.+||.||++.... .|.. ..+.++|..+|+++ +..+|.|++|||||+|||.
T Consensus 82 Qq--igLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVG 145 (309)
T COG1125 82 QQ--IGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVG 145 (309)
T ss_pred hh--cccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHH
Confidence 87 479999999999986532 4443 46788999999986 5888999999999999984
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-25 Score=248.58 Aligned_cols=204 Identities=25% Similarity=0.324 Sum_probs=152.1
Q ss_pred eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC---CceeEEEcCCC-------ceEEEEecccccccCccHHH
Q 008771 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP---DSGNVIKAKSN-------MKIAFLSQEFEVSMSRTVRE 180 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p---~~G~I~~~~~~-------~~i~~v~Q~~~~~~~~tv~e 180 (554)
.+|+|+|.-+++|+.+.++|+.|||||||++.++|...- ..|+|.++|.+ ..++|.+|+...++.+||+|
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVre 208 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRE 208 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEee
Confidence 699999999999999999999999999999999998753 35689998864 35899999988889999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcc----ccCCC
Q 008771 181 EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD----DGDRL 256 (554)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~----~~~~~ 256 (554)
-+-.+.+-. ... ..+++..+ .+...+..+.+++.+||++- ..|..
T Consensus 209 TldFa~rck---------------~~~----------~r~~~~~R------~e~~~~~~d~~lkilGL~~~~dT~VGnd~ 257 (1391)
T KOG0065|consen 209 TLDFAARCK---------------GPG----------SRYDEVSR------REKLAAMTDYLLKILGLDHCADTLVGNDM 257 (1391)
T ss_pred hhhHHHhcc---------------CCc----------cccccccH------HHHHHHHHHHHHHHhCchhhccceecccc
Confidence 764332100 000 00000000 00111245677888888642 34556
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCH-HHHHhhcceEEEeeC
Q 008771 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR-AFLDQLCTKIVETEM 331 (554)
Q Consensus 257 ~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~-~~l~~~~d~i~~l~~ 331 (554)
++-.|||||+||.+|-+++.+|.++.+||+|+|||..+.-.+.+.|++ .+.|++++=|.. ..+-++-|.|++|.+
T Consensus 258 ~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e 337 (1391)
T KOG0065|consen 258 VRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE 337 (1391)
T ss_pred cccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec
Confidence 678999999999999999999999999999999999887777776653 466777665554 556678899999999
Q ss_pred CeeeeccCChhHHHH
Q 008771 332 GVSRTYEGNYSQYVL 346 (554)
Q Consensus 332 g~~~~~~G~~~~~~~ 346 (554)
|.. +|.|++++.+.
T Consensus 338 G~~-iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 338 GYQ-IYQGPRDEVLP 351 (1391)
T ss_pred cce-EEeccHHHHHH
Confidence 986 67777765443
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-26 Score=216.92 Aligned_cols=128 Identities=38% Similarity=0.488 Sum_probs=108.2
Q ss_pred EEEeeeeEecCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008771 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (554)
Q Consensus 425 l~~~~l~~~y~~----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------ 488 (554)
++++|+++.|.. ..+++++||+|++||+++|+||+||||||||++|.|+.+|++|.|.++|.++
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 678999998863 3689999999999999999999999999999999999999999999998665
Q ss_pred --eEEEEecccccCCCCCCCHHHHHHhhc----cc--CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 --LPNYFEQNQAEALDLDKTVLETVAEAA----ED--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 --~~~y~~Q~~~~~l~~~~tv~e~l~~~~----~~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.+||++|+. .|.++.||.|||..+. .. .....+..++..+|+.....+++|++|||||||||||
T Consensus 82 ~~~iGfvFQ~~--nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAI 153 (226)
T COG1136 82 RKKIGFVFQNF--NLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAI 153 (226)
T ss_pred HHhEEEECccC--CCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHH
Confidence 368999985 5779999999998432 11 1244678889999996554458999999999999985
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-25 Score=213.94 Aligned_cols=131 Identities=30% Similarity=0.423 Sum_probs=116.3
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------- 488 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------- 488 (554)
.++|++++++++|+++.+++++||+|++||+++|+|++|||||||||+|.|+++|++|+|++.|.++
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 6789999999999999999999999999999999999999999999999999999999999999876
Q ss_pred eEEEEecccccCCCCCCCHHHHHHhhcc---cCCHH----HHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 LPNYFEQNQAEALDLDKTVLETVAEAAE---DWRID----DIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~~~~~----~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+.|+++|+ ..|+.+.||+||++.... ..... -+..-|+.+|++++..+..|++||||++.|++|
T Consensus 86 r~GvlFQ~--gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaL 156 (263)
T COG1127 86 RMGVLFQQ--GALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVAL 156 (263)
T ss_pred heeEEeec--cccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHH
Confidence 26899997 479999999999986532 23333 345569999999988999999999999999975
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-25 Score=206.98 Aligned_cols=206 Identities=22% Similarity=0.335 Sum_probs=155.0
Q ss_pred ccEEEEeEEEEeC----CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC----CceeEEEcCCC-------
Q 008771 96 SGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP----DSGNVIKAKSN------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~----~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p----~~G~I~~~~~~------- 160 (554)
+.+.+.|++..+. -..+++++|+++.+||+-||||++|||||-..|+|+|..+- +.-..++++.+
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 4578889988883 35799999999999999999999999999999999998763 22233333221
Q ss_pred -------ceEEEEecccccc--cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCC
Q 008771 161 -------MKIAFLSQEFEVS--MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (554)
Q Consensus 161 -------~~i~~v~Q~~~~~--~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (554)
..|+++||+|.-. ++.+|...+... ...+.+-++....|.
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~---------------------IP~wTfkgrWWq~F~---------- 130 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQN---------------------IPAWTYKGRWWQRFG---------- 130 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhh---------------------CccccccchHhhhhc----------
Confidence 2488999998533 333443322111 111111122211111
Q ss_pred cccHHHHHHHHhhhcCCCc--cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cC
Q 008771 232 LDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQ 305 (554)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~ 305 (554)
.-..++.++|..+|+.+ +....+|.+|--||-|+|+||.|++.+|++||.|||||++|+.+...+..+|. ..
T Consensus 131 --WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~ 208 (330)
T COG4170 131 --WRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNS 208 (330)
T ss_pred --hhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccC
Confidence 12467888999999974 34567899999999999999999999999999999999999999888888763 46
Q ss_pred CCeEEEEecCHHHHHhhcceEEEeeCCee
Q 008771 306 DVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (554)
Q Consensus 306 g~tvIiisHd~~~l~~~~d~i~~l~~g~~ 334 (554)
+.||+++|||+..+.++||+|-+|.=|..
T Consensus 209 ~TtILL~s~Dl~~is~W~d~i~VlYCGQ~ 237 (330)
T COG4170 209 NTTILLISHDLQMISQWADKINVLYCGQT 237 (330)
T ss_pred CceEEEEcccHHHHHHHhhheEEEEeccc
Confidence 89999999999999999999999976653
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-25 Score=206.41 Aligned_cols=128 Identities=31% Similarity=0.421 Sum_probs=111.6
Q ss_pred eEEEeeeeEecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------e
Q 008771 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------L 489 (554)
Q Consensus 424 ~l~~~~l~~~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------------~ 489 (554)
.|+++||++.|+. +.+|+++||+|.+||.+-|+||+|+|||||+|+|++.++|++|.|+++|+++ .
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 3789999999964 5599999999999999999999999999999999999999999999999877 3
Q ss_pred EEEEecccccCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 490 PNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|+++|+. -|.++.||+||++.+.. .. -...+.+.|.++|+. +..+.-|..|||||||||+|
T Consensus 81 IGvVFQD~--rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~-~k~~~lP~~LSGGEQQRvaI 148 (223)
T COG2884 81 IGVVFQDF--RLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLK-HKARALPSQLSGGEQQRVAI 148 (223)
T ss_pred eeeEeeec--cccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccc-hhhhcCccccCchHHHHHHH
Confidence 68999985 46689999999987743 11 134678899999996 46889999999999999975
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-25 Score=210.13 Aligned_cols=129 Identities=32% Similarity=0.401 Sum_probs=111.9
Q ss_pred ceEEEeeeeEec-CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------
Q 008771 423 SVVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------- 488 (554)
Q Consensus 423 ~~l~~~~l~~~y-~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------- 488 (554)
.+|+++|+++.| +++.++++|||+|.+||+|+|+|++|||||||||+|.|+..|++|+|.++|.++
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 468999999999 667899999999999999999999999999999999999999999999998655
Q ss_pred eEEEEecccccCCCCCCCHHHHHHhhcc--------------cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 LPNYFEQNQAEALDLDKTVLETVAEAAE--------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.+||++|++ .|-++.||++|+..+.. ......+...|.++|+. +.+.++.+.|||||+|||+|
T Consensus 82 ~iGmIfQ~~--nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~-~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 82 DIGMIFQQF--NLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL-DKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred hceeEeccC--CcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcH-HHHHHHhccCCcchhHHHHH
Confidence 368999986 58899999999875421 11224577889999994 67899999999999999975
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-25 Score=215.87 Aligned_cols=130 Identities=37% Similarity=0.535 Sum_probs=113.1
Q ss_pred ceEEEeeeeEecCCc-cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eE
Q 008771 423 SVVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LP 490 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~-~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----------~~ 490 (554)
+.+++++++|.|++. .+++++||+|.+||+++|+|+||||||||+++|+|+++|.+|.|.++|.++ .+
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 468999999999775 899999999999999999999999999999999999999999999998764 37
Q ss_pred EEEecccccCCCCCCCHHHHHHhhccc--CC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
||++|+|.+++ +..||.++++.+... .. ...+..+|..+++.. ..+++|..|||||||||+|
T Consensus 82 G~VfQnpd~q~-~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~-~~~r~p~~LSGGqkqRvaI 149 (235)
T COG1122 82 GLVFQNPDDQL-FGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEE-LLDRPPFNLSGGQKQRVAI 149 (235)
T ss_pred EEEEECccccc-ccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchh-hccCCccccCCcceeeHHh
Confidence 89999997655 778999999877542 22 245788999999964 5899999999999999986
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-24 Score=222.22 Aligned_cols=210 Identities=25% Similarity=0.421 Sum_probs=176.7
Q ss_pred CCccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------
Q 008771 94 ISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------- 161 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------- 161 (554)
..+.+++++++..-. +.+.+++|||+|++||++||.|-.|-|-+.|+.+|+|+.+|.+|+|.++|.+.
T Consensus 254 g~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 254 GEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred CCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 467899999998664 35789999999999999999999999999999999999999999999998753
Q ss_pred -eEEEEeccc---ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 162 -KIAFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 162 -~i~~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
.++|||.|. .+.+.+|+.||+....... + .+ . ....++...+..
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~-------------------~-~~-----------~-~~g~l~~~~i~~ 381 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDK-------------------K-PF-----------S-RGGFLDRRAIRK 381 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccc-------------------c-cc-----------c-cccccCHHHHHH
Confidence 599999986 4567889999985321100 0 00 0 001234556777
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEec
Q 008771 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISH 314 (554)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisH 314 (554)
.+.++++++++.......++..||||.+||+-+||-|..+|++||+.+||-|||..+.+.+.+.| ++.|++|++||-
T Consensus 382 ~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~ 461 (501)
T COG3845 382 FARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISE 461 (501)
T ss_pred HHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEeh
Confidence 88899999998766667788999999999999999999999999999999999999999888765 457999999999
Q ss_pred CHHHHHhhcceEEEeeCCeee
Q 008771 315 DRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~ 335 (554)
|++++..+||||.+|.+|++.
T Consensus 462 dLDEil~lsDrIaVi~~Gri~ 482 (501)
T COG3845 462 DLDEILELSDRIAVIYEGRIV 482 (501)
T ss_pred hHHHHHHhhheeeeeeCCcee
Confidence 999999999999999999874
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.4e-24 Score=242.19 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=92.5
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCC---CeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEE
Q 008771 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP---DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVI 311 (554)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIi 311 (554)
+..++|..+||....+++++.+|||||+||+.||++|+.+| +++||||||++||+..+..|.+.|+ +.|.|||+
T Consensus 809 ~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIi 888 (943)
T PRK00349 809 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVV 888 (943)
T ss_pred HHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34678999999754578899999999999999999999999 9999999999999999999888764 35899999
Q ss_pred EecCHHHHHhhcceEEEe------eCCeeeeccCChhHHHH
Q 008771 312 ISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 312 isHd~~~l~~~~d~i~~l------~~g~~~~~~G~~~~~~~ 346 (554)
||||++++. .||+|++| ++|++ ++.|..+++..
T Consensus 889 itH~~~~i~-~aD~ii~Lgp~~G~~~G~I-v~~Gt~~el~~ 927 (943)
T PRK00349 889 IEHNLDVIK-TADWIIDLGPEGGDGGGEI-VATGTPEEVAK 927 (943)
T ss_pred EecCHHHHH-hCCEEEEecCCcCCCCCEE-EEeCCHHHHHh
Confidence 999999995 69999999 56765 57788776654
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-25 Score=216.47 Aligned_cols=128 Identities=31% Similarity=0.408 Sum_probs=111.6
Q ss_pred eEEEeeeeEecCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008771 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~-----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------- 488 (554)
.|+++++++.|.. ..++++|||+|++||++||+|.+|+|||||+|+|.++.+|++|+|.++|.++
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 3789999999975 3689999999999999999999999999999999999999999999999766
Q ss_pred ---eEEEEecccccCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 ---LPNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ---~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|+++|+. .|.-.+||++|++++.. .+ ....+.++|+.+|+. |..++.|.+|||||||||+|
T Consensus 81 ~R~~IGMIFQhF--nLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~-dk~~~yP~qLSGGQKQRVaI 152 (339)
T COG1135 81 LRQKIGMIFQHF--NLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS-DKADRYPAQLSGGQKQRVAI 152 (339)
T ss_pred HHhhccEEeccc--cccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh-hhhccCchhcCcchhhHHHH
Confidence 368999986 36678999999987643 11 235688899999996 78899999999999999975
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-25 Score=217.82 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=67.7
Q ss_pred CCCCCCCChhHHHHHHHHHHHccC----CCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceE
Q 008771 254 DRLVASFSSGWQMRMSLGKILLQD----PDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 254 ~~~~~~LSGGqrqRv~LAraL~~~----p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i 326 (554)
++++.+||||||||++||++++.+ |+++||||||++||+....++.+.+++ .|.++|+||||.+++ .+||+|
T Consensus 150 ~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d~i 228 (247)
T cd03275 150 FRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKADAL 228 (247)
T ss_pred hhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCCeE
Confidence 455689999999999999999864 899999999999999999998887754 378999999998877 579999
Q ss_pred EEeeC
Q 008771 327 VETEM 331 (554)
Q Consensus 327 ~~l~~ 331 (554)
++|..
T Consensus 229 ~~~~~ 233 (247)
T cd03275 229 VGVYR 233 (247)
T ss_pred EEEEe
Confidence 99853
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-25 Score=216.52 Aligned_cols=127 Identities=30% Similarity=0.428 Sum_probs=111.5
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc---ee--------eEEEE
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH---NV--------LPNYF 493 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~---~~--------~~~y~ 493 (554)
|+++++++.|+...+++++||+|+.||.+|+.|||||||||||++|+|++.|++|.|.++|. +. ++||+
T Consensus 3 i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfv 82 (345)
T COG1118 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFV 82 (345)
T ss_pred eeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEE
Confidence 67889999999888999999999999999999999999999999999999999999999987 33 47999
Q ss_pred ecccccCCCCCCCHHHHHHhhccc--------CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAED--------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~~--------~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|+. .+++.+||.|||+.+.+. .....+.++|..+.+. ...+++|.+|||||||||||
T Consensus 83 FQ~Y--ALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~-~la~ryP~QLSGGQrQRVAL 148 (345)
T COG1118 83 FQHY--ALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE-GLADRYPAQLSGGQRQRVAL 148 (345)
T ss_pred Eech--hhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc-chhhcCchhcChHHHHHHHH
Confidence 9986 488999999999987531 1224677889999995 47889999999999999985
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=220.38 Aligned_cols=208 Identities=20% Similarity=0.336 Sum_probs=154.9
Q ss_pred CCccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--ceEEEEecc
Q 008771 94 ISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--MKIAFLSQE 169 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--~~i~~v~Q~ 169 (554)
....|++++|++.-++ ..+++|+||+|+.|+.+.|.||||||||+|+|+|+|+-+..+|++....+. ..+-||||.
T Consensus 430 ~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQr 509 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQR 509 (659)
T ss_pred ccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCC
Confidence 3467999999998865 357888999999999999999999999999999999999999999865443 569999999
Q ss_pred cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc-CC
Q 008771 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL-GF 248 (554)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gl 248 (554)
|.. ...|.+|.+..+...... ......|.++ .+.++. .+...+++.. |+
T Consensus 510 PYm-t~GTLRdQvIYP~~~~~~-----------~~~~~~d~~i-~r~Le~-----------------v~L~hl~~r~ggl 559 (659)
T KOG0060|consen 510 PYM-TLGTLRDQVIYPLKAEDM-----------DSKSASDEDI-LRILEN-----------------VQLGHLLEREGGL 559 (659)
T ss_pred CCc-cccchhheeeccCccccc-----------cccCCCHHHH-HHHHHH-----------------hhhhhHHHHhCCC
Confidence 976 445999987654321100 0011111111 111110 0111222222 22
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEE
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVE 328 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~ 328 (554)
+......-...||+||+||+++||.+.++|++-||||.||++|.+....+.+.+++.|.|.|-|+|+..+.. +-|.++.
T Consensus 560 d~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~k-fHd~~L~ 638 (659)
T KOG0060|consen 560 DQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWK-FHDYVLR 638 (659)
T ss_pred CchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHh-hhhEEEE
Confidence 211111123589999999999999999999999999999999999999999999999999999999998885 6899998
Q ss_pred eeCC
Q 008771 329 TEMG 332 (554)
Q Consensus 329 l~~g 332 (554)
|+.+
T Consensus 639 ~~g~ 642 (659)
T KOG0060|consen 639 MDGR 642 (659)
T ss_pred ecCC
Confidence 8764
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-24 Score=215.14 Aligned_cols=131 Identities=29% Similarity=0.422 Sum_probs=112.4
Q ss_pred CCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eEEEEec
Q 008771 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQ 495 (554)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----~~~y~~Q 495 (554)
..+.|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.++ .++|++|
T Consensus 9 ~~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q 88 (257)
T PRK11247 9 QGTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQ 88 (257)
T ss_pred CCCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEec
Confidence 35679999999999887899999999999999999999999999999999999999999999987654 3689999
Q ss_pred ccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++..||.||+...........+..++..+++. +..++++..|||||||||+|
T Consensus 89 ~~--~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqrl~l 144 (257)
T PRK11247 89 DA--RLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLA-DRANEWPAALSGGQKQRVAL 144 (257)
T ss_pred Cc--cCCCCCcHHHHHHhcccchHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHH
Confidence 85 3666789999997643222245678899999995 46789999999999999875
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-24 Score=223.18 Aligned_cols=128 Identities=25% Similarity=0.410 Sum_probs=112.8
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEec
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q 495 (554)
.|+++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|++|
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q 83 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQ 83 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 58999999999887899999999999999999999999999999999999999999999998765 2689999
Q ss_pred ccccCCCCCCCHHHHHHhhccc------CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++..||.||+..+... .....+.++++.+++. +.+++++..|||||||||+|
T Consensus 84 ~~--~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~-~~~~~~~~~LSgGq~QRvaL 145 (353)
T TIGR03265 84 SY--ALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP-GSERKYPGQLSGGQQQRVAL 145 (353)
T ss_pred Cc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhCChhhCCHHHHHHHHH
Confidence 85 588899999999876431 1234688899999995 47899999999999999975
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-24 Score=223.24 Aligned_cols=130 Identities=29% Similarity=0.482 Sum_probs=113.6
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEE
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYF 493 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~ 493 (554)
...|+++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|+
T Consensus 4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 4579999999999887899999999999999999999999999999999999999999999998654 36899
Q ss_pred ecccccCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++ .+++.+||.||+..... .. ....+..+++.+++. +..++++..|||||||||+|
T Consensus 84 fQ~~--~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~-~~~~r~~~~LSgGq~QRVaL 147 (351)
T PRK11432 84 FQSY--ALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA-GFEDRYVDQISGGQQQRVAL 147 (351)
T ss_pred eCCc--ccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHH
Confidence 9985 58889999999987542 11 134678899999995 46789999999999999975
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-24 Score=224.05 Aligned_cols=128 Identities=28% Similarity=0.421 Sum_probs=112.1
Q ss_pred eEEEeeeeEec-CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEe
Q 008771 424 VVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFE 494 (554)
Q Consensus 424 ~l~~~~l~~~y-~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~ 494 (554)
.|+++|+++.| ++..+|+++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|++
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 48899999999 677899999999999999999999999999999999999999999999998755 378999
Q ss_pred cccccCCCCCCCHHHHHHhhccc--CC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 495 QNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|++ .+++.+||.||+.++... .. ...+..+|+.+++. +.++++|..|||||||||+|
T Consensus 83 Q~~--~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~QRval 145 (356)
T PRK11650 83 QNY--ALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE-PLLDRKPRELSGGQRQRVAM 145 (356)
T ss_pred CCc--cccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHH
Confidence 986 588899999999876431 11 24578899999995 57899999999999999975
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-24 Score=208.64 Aligned_cols=127 Identities=26% Similarity=0.405 Sum_probs=107.6
Q ss_pred EEEeeeeEecCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------e
Q 008771 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------L 489 (554)
Q Consensus 425 l~~~~l~~~y~~--~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------------~ 489 (554)
++++|+++.|++ +.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964 4699999999999999999999999999999999999999999999998654 2
Q ss_pred EEEEecccccCCCCCCCHHHHHHhhcc--c----CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 490 PNYFEQNQAEALDLDKTVLETVAEAAE--D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++|++ .+++..||.||+..... . .....+..+++.+++. +..++++..|||||||||+|
T Consensus 82 i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 82 IGMVFQDH--RLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE-GKAHALPMQLSGGEQQRVAI 149 (216)
T ss_pred ceEEecCc--cccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHH
Confidence 57999985 46677899999875421 1 1234678899999995 46789999999999999875
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-24 Score=210.42 Aligned_cols=127 Identities=33% Similarity=0.449 Sum_probs=107.1
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------eEE
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LPN 491 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------------~~~ 491 (554)
|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 4689999999887899999999999999999999999999999999999999999999988543 257
Q ss_pred EEecccccCCCCCCCHHHHHHhhcc---cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAAE---DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~---~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|++|++ .+++..||.+|+..... ... ...+..++..+++. +..++++..|||||||||+|
T Consensus 81 ~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~i 147 (235)
T cd03261 81 MLFQSG--ALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR-GAEDLYPAELSGGMKKRVAL 147 (235)
T ss_pred EEccCc--ccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHH
Confidence 999985 46677899999875421 111 23567889999995 45789999999999999875
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-24 Score=221.95 Aligned_cols=131 Identities=28% Similarity=0.467 Sum_probs=114.2
Q ss_pred CCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEE
Q 008771 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNY 492 (554)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y 492 (554)
..+.|+++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|
T Consensus 11 ~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 11 LSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred CCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 35679999999999887899999999999999999999999999999999999999999999998765 2689
Q ss_pred EecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++ .+++..||.||+..+.. ... ...+..+++.+++. +..+++|..|||||||||+|
T Consensus 91 vfQ~~--~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~~LSgGq~QRVaL 155 (375)
T PRK09452 91 VFQSY--ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE-EFAQRKPHQLSGGQQQRVAI 155 (375)
T ss_pred EecCc--ccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHH
Confidence 99985 58899999999987542 111 23577889999995 57899999999999999985
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-24 Score=208.48 Aligned_cols=127 Identities=34% Similarity=0.497 Sum_probs=107.8
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEecc
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q~ 496 (554)
++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 4689999999887899999999999999999999999999999999999999999999988654 36799998
Q ss_pred cccCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 497 QAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+ .+++..||.+|+..... .. ....+..++..+++. +..++++..|||||||||+|
T Consensus 81 ~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~l 141 (213)
T cd03259 81 Y--ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLE-GLLNRYPHELSGGQQQRVAL 141 (213)
T ss_pred h--hhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHH
Confidence 6 36677899999875422 11 123577899999996 46789999999999999875
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-24 Score=207.99 Aligned_cols=127 Identities=29% Similarity=0.389 Sum_probs=108.0
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEEEec
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y~~Q 495 (554)
|+++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 4789999999888899999999999999999999999999999999999999999999988543 3679999
Q ss_pred ccccCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++..||.+++..... .. ....+..+++.+++. +..++++..|||||||||+|
T Consensus 81 ~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~l 142 (220)
T cd03265 81 DL--SVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLEI 142 (220)
T ss_pred Cc--cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhCCHHHHHHHHH
Confidence 86 36677899999865321 11 123578899999995 56789999999999999875
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-24 Score=207.43 Aligned_cols=127 Identities=28% Similarity=0.429 Sum_probs=107.3
Q ss_pred EEeeeeEecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------eEEEEeccc
Q 008771 426 TIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQNQ 497 (554)
Q Consensus 426 ~~~~l~~~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------~~~y~~Q~~ 497 (554)
+++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|++
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 36799999987 7899999999999999999999999999999999999999999999998764 368999986
Q ss_pred ccCCCCCCCHHHHHHhhcc--cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 498 AEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 498 ~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
...+ +..||.||+..... ......+..+++.+++. +..++++..|||||||||+|
T Consensus 81 ~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 137 (205)
T cd03226 81 DYQL-FTDSVREELLLGLKELDAGNEQAETVLKDLDLY-ALKERHPLSLSGGQKQRLAI 137 (205)
T ss_pred hhhh-hhccHHHHHhhhhhhcCccHHHHHHHHHHcCCc-hhcCCCchhCCHHHHHHHHH
Confidence 3223 45799999976432 12235688999999996 46789999999999999875
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-23 Score=200.27 Aligned_cols=162 Identities=18% Similarity=0.132 Sum_probs=115.3
Q ss_pred eEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCc-----ee----EEEcC-CCceEEEEecccccccCccHHHH
Q 008771 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS-----GN----VIKAK-SNMKIAFLSQEFEVSMSRTVREE 181 (554)
Q Consensus 112 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~-----G~----I~~~~-~~~~i~~v~Q~~~~~~~~tv~e~ 181 (554)
.++++++++.+| +++|+|+||||||||+.+|.-...... |. +...+ ....|.+.+|+..++.+
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~------ 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN------ 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC------
Confidence 346678888887 889999999999999999984332221 21 01111 12357777777554331
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCC
Q 008771 182 FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261 (554)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LS 261 (554)
- .. ......+.++++. ....++++.+||
T Consensus 84 ~--~~----------------------------------------------~~~~~~~~~~l~~----~~~~~~~~~~lS 111 (198)
T cd03276 84 P--LC----------------------------------------------VLSQDMARSFLTS----NKAAVRDVKTLS 111 (198)
T ss_pred c--CC----------------------------------------------HHHHHHHHHHhcc----ccccCCcccccC
Confidence 0 00 0001223344444 244578899999
Q ss_pred hhHHHHHHHHHHH----ccCCCeEeecCCCCCCCHHHHHHHHHHHcc------CCCeEEEEecCHHHHHhhcceEEEeeC
Q 008771 262 SGWQMRMSLGKIL----LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK------QDVPMVIISHDRAFLDQLCTKIVETEM 331 (554)
Q Consensus 262 GGqrqRv~LAraL----~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~------~g~tvIiisHd~~~l~~~~d~i~~l~~ 331 (554)
+|||||++||+|+ +.+|+++||||||++||+..+..+.++|.+ .+.|||++||+++.+..+ |+|.+|..
T Consensus 112 ~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~ 190 (198)
T cd03276 112 GGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRM 190 (198)
T ss_pred hhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEe
Confidence 9999999999999 689999999999999999998888877643 135899999999999875 99999987
Q ss_pred Ce
Q 008771 332 GV 333 (554)
Q Consensus 332 g~ 333 (554)
++
T Consensus 191 ~~ 192 (198)
T cd03276 191 KD 192 (198)
T ss_pred cC
Confidence 54
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-24 Score=204.93 Aligned_cols=127 Identities=27% Similarity=0.381 Sum_probs=109.5
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEecc
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q~ 496 (554)
|+++|+++.|+++.+++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 4689999999877899999999999999999999999999999999999999999999998755 36799998
Q ss_pred cccCCCCCCCHHHHHHhhcc--cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 497 QAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+ .+++..||.||+..... ......+..+++.+++. +..++++..|||||||||+|
T Consensus 81 ~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 137 (208)
T cd03268 81 P--GFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLK-DSAKKKVKGFSLGMKQRLGI 137 (208)
T ss_pred C--ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH-HHHhhhHhhCCHHHHHHHHH
Confidence 5 36678899999865432 22345688899999995 46789999999999999875
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8e-24 Score=218.74 Aligned_cols=134 Identities=22% Similarity=0.365 Sum_probs=114.0
Q ss_pred CCceEEEeeeeEecCC-------------ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008771 421 GRSVVTIKNLEFGYED-------------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (554)
Q Consensus 421 ~~~~l~~~~l~~~y~~-------------~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~ 487 (554)
.+++|+++|+++.|+. ..+++++||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence 4578999999999962 358999999999999999999999999999999999999999999999876
Q ss_pred e-------------eEEEEecccccCCCCCCCHHHHHHhhcc----cCC----HHHHHHHHhhCCCChhhhccccCcCCh
Q 008771 488 V-------------LPNYFEQNQAEALDLDKTVLETVAEAAE----DWR----IDDIKGLLGRCNFKADMLDRKVSLLSG 546 (554)
Q Consensus 488 ~-------------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~----~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSG 546 (554)
+ .++|++|++...+++..||.+++.+... ... ...++.+|+.+++..+.++++|..|||
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg 164 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 4 2689999976568889999999875321 122 235678899999976678999999999
Q ss_pred hhhhcccC
Q 008771 547 GEKIILLY 554 (554)
Q Consensus 547 Gek~Rl~l 554 (554)
||+|||+|
T Consensus 165 G~~QRv~i 172 (331)
T PRK15079 165 GQCQRIGI 172 (331)
T ss_pred HHHHHHHH
Confidence 99999975
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-24 Score=206.89 Aligned_cols=127 Identities=34% Similarity=0.483 Sum_probs=107.8
Q ss_pred EEEeeeeEecCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eEEEEec
Q 008771 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQ 495 (554)
Q Consensus 425 l~~~~l~~~y~~----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----~~~y~~Q 495 (554)
++++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 468999999986 6799999999999999999999999999999999999999999999988654 3689999
Q ss_pred ccccCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++..||.+|+..... .. ....+..++..+++. +..++++..|||||||||+|
T Consensus 81 ~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~l 142 (220)
T cd03293 81 QD--ALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLS-GFENAYPHQLSGGMRQRVAL 142 (220)
T ss_pred cc--ccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHH
Confidence 86 36677899999875421 11 134678899999995 46789999999999999875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.7e-24 Score=206.04 Aligned_cols=127 Identities=35% Similarity=0.480 Sum_probs=106.9
Q ss_pred EEEeeeeEecCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008771 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (554)
Q Consensus 425 l~~~~l~~~y~~----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------ 488 (554)
|+++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 468999999976 6799999999999999999999999999999999999999999999987543
Q ss_pred --eEEEEecccccCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 --LPNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 --~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.|++..... .. ....+..++..+++. +.+++++..|||||||||+|
T Consensus 81 ~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 151 (218)
T cd03255 81 RRHIGFVFQSF--NLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG-DRLNHYPSELSGGQQQRVAI 151 (218)
T ss_pred hhcEEEEeecc--ccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhcChhhcCHHHHHHHHH
Confidence 267999985 36677899999876422 11 124578899999996 45789999999999999975
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=210.01 Aligned_cols=127 Identities=28% Similarity=0.404 Sum_probs=108.6
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eEEEEeccccc
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQNQAE 499 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----~~~y~~Q~~~~ 499 (554)
++++|+++.|+++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ ..+|++|++
T Consensus 2 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~-- 79 (255)
T PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE-- 79 (255)
T ss_pred EEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC--
Confidence 7899999999877899999999999999999999999999999999999999999999988654 368999985
Q ss_pred CCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 500 ALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 500 ~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.+++..||.+|+..... ... ...+..+|..+++. +..++++..|||||||||+|
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrl~l 139 (255)
T PRK11248 80 GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE-GAEKRYIWQLSGGQRQRVGI 139 (255)
T ss_pred ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHH
Confidence 46677899999875321 111 24578899999995 46789999999999999875
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-23 Score=233.17 Aligned_cols=104 Identities=24% Similarity=0.319 Sum_probs=88.8
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHcc---CCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEE
Q 008771 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ---DPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVI 311 (554)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~---~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIi 311 (554)
+..++|..+||.....++++.+|||||+||+.||++|+. +|+++||||||++||+..+..|.+.|+ +.|.|||+
T Consensus 807 ~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIv 886 (924)
T TIGR00630 807 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVV 886 (924)
T ss_pred HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 345788899997545788999999999999999999997 599999999999999999998888764 35899999
Q ss_pred EecCHHHHHhhcceEEEe------eCCeeeeccCChhH
Q 008771 312 ISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQ 343 (554)
Q Consensus 312 isHd~~~l~~~~d~i~~l------~~g~~~~~~G~~~~ 343 (554)
||||++++. .||+|++| ++|++ ++.|..++
T Consensus 887 i~H~~~~i~-~aD~ii~Lgp~~G~~gG~i-v~~G~~~~ 922 (924)
T TIGR00630 887 IEHNLDVIK-TADYIIDLGPEGGDGGGTI-VASGTPEE 922 (924)
T ss_pred EeCCHHHHH-hCCEEEEecCCccCCCCEE-EEeCCHHH
Confidence 999999995 69999999 57776 46676543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.1e-24 Score=206.75 Aligned_cols=128 Identities=29% Similarity=0.465 Sum_probs=106.4
Q ss_pred EEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eEEEEecccccC
Q 008771 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQNQAEA 500 (554)
Q Consensus 426 ~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----~~~y~~Q~~~~~ 500 (554)
+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|++...
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 367899999877799999999999999999999999999999999999999999999998643 378999986422
Q ss_pred CCCCCCHHHHHHhhccc----------CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 501 LDLDKTVLETVAEAAED----------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 501 l~~~~tv~e~l~~~~~~----------~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
..+..||.||+...... .....+..++..+++. +..++++..|||||||||+|
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~l 143 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS-ELADRQIGELSGGQQQRVLL 143 (213)
T ss_pred cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHH
Confidence 22457999998764321 1124578899999995 56889999999999999875
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.90 E-value=9e-24 Score=205.10 Aligned_cols=127 Identities=23% Similarity=0.455 Sum_probs=108.1
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------eEEEEecccc
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------LPNYFEQNQA 498 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------~~~y~~Q~~~ 498 (554)
++++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|++|++
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~- 79 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER- 79 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC-
Confidence 4689999999887899999999999999999999999999999999999999999999998654 368999986
Q ss_pred cCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 499 EALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 499 ~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.+++..||.||+..... .. ....+.+++..+++. +..++++..|||||||||+|
T Consensus 80 -~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~l 139 (210)
T cd03269 80 -GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-EYANKRVEELSKGNQQKVQF 139 (210)
T ss_pred -cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-HHHhCcHhhCCHHHHHHHHH
Confidence 46677899999865421 11 124577899999996 46789999999999999874
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=206.94 Aligned_cols=129 Identities=29% Similarity=0.391 Sum_probs=108.7
Q ss_pred ceEEEeeeeEecCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008771 423 SVVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (554)
Q Consensus 423 ~~l~~~~l~~~y~~----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------- 488 (554)
++++++|+++.|++ ..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 57999999999964 4699999999999999999999999999999999999999999999998543
Q ss_pred ----eEEEEecccccCCCCCCCHHHHHHhhcc--c----CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 ----LPNYFEQNQAEALDLDKTVLETVAEAAE--D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ----~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.+|+..... . .....+..++..+++. +..++++..|||||||||+|
T Consensus 84 ~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrl~l 156 (233)
T PRK11629 84 LRNQKLGFIYQFH--HLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-HRANHRPSELSGGERQRVAI 156 (233)
T ss_pred HHhccEEEEecCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHH
Confidence 268999985 46677899999875321 1 1123578899999995 46789999999999999875
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-23 Score=219.23 Aligned_cols=131 Identities=29% Similarity=0.486 Sum_probs=114.2
Q ss_pred CCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEE
Q 008771 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNY 492 (554)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y 492 (554)
..++|+++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|
T Consensus 16 ~~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 16 LTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CCceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 36689999999999887799999999999999999999999999999999999999999999998765 3689
Q ss_pred EecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++ .+++..||.||+..+.. ... ...+.++++.+++. +..+++|..|||||||||+|
T Consensus 96 vfQ~~--~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~LSgGq~QRVaL 160 (377)
T PRK11607 96 MFQSY--ALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ-EFAKRKPHQLSGGQRQRVAL 160 (377)
T ss_pred EeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHH
Confidence 99986 48899999999987542 111 23577899999995 46899999999999999985
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-23 Score=204.73 Aligned_cols=127 Identities=30% Similarity=0.488 Sum_probs=107.5
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEecc
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q~ 496 (554)
|+++|+++.|+++.+++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|++|+
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 4689999999887899999999999999999999999999999999999999999999988654 36799998
Q ss_pred cccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 497 QAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+ .+++..||.+|+..... ... ...+..++..+++. +..++++..|||||||||+|
T Consensus 81 ~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~l 141 (213)
T cd03301 81 Y--ALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-HLLDRKPKQLSGGQRQRVAL 141 (213)
T ss_pred h--hhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHHhCChhhCCHHHHHHHHH
Confidence 5 36677899999875421 111 23567889999995 56799999999999999874
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-23 Score=204.78 Aligned_cols=127 Identities=29% Similarity=0.369 Sum_probs=107.6
Q ss_pred EEEeeeeEec-CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------eE
Q 008771 425 VTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LP 490 (554)
Q Consensus 425 l~~~~l~~~y-~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------------~~ 490 (554)
++++|+++.| ++..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 6899999999 456799999999999999999999999999999999999999999999988643 25
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcc------cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++ .+++..||.+|+..... ......+..+++.+++. +..++++..|||||||||+|
T Consensus 82 ~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 82 GVVFQDF--RLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE-HKADAFPEQLSGGEQQRVAI 148 (214)
T ss_pred EEEecCh--hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHH
Confidence 7999986 36677899999876421 11234678899999996 46789999999999999875
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-23 Score=202.27 Aligned_cols=127 Identities=27% Similarity=0.425 Sum_probs=109.1
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEEEec
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y~~Q 495 (554)
++++|+++.|+++.+++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ ..+|++|
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~ 81 (204)
T PRK13538 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGH 81 (204)
T ss_pred eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCC
Confidence 7899999999887899999999999999999999999999999999999999999999998654 2568888
Q ss_pred ccccCCCCCCCHHHHHHhhccc---CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAED---WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++..|+.|++...... .....+..+++.+++. +..++++..|||||||||+|
T Consensus 82 ~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~l 140 (204)
T PRK13538 82 QP--GIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLA-GFEDVPVRQLSAGQQRRVAL 140 (204)
T ss_pred cc--ccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHH
Confidence 64 466778999998754321 2345688899999995 45789999999999999875
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-23 Score=216.86 Aligned_cols=127 Identities=27% Similarity=0.365 Sum_probs=108.8
Q ss_pred EEEeeeeEecCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008771 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (554)
Q Consensus 425 l~~~~l~~~y~~----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------ 488 (554)
|+++|+++.|++ ..+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999952 3699999999999999999999999999999999999999999999998754
Q ss_pred -eEEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 -LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 -~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.||+..... .+. ...+.++|+.+|+. +..+++|..|||||||||+|
T Consensus 82 ~~Ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~-~~~~~~~~~LSgGqkQRV~I 151 (343)
T TIGR02314 82 RQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG-DKHDSYPSNLSGGQKQRVAI 151 (343)
T ss_pred cCEEEEECCc--cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHH
Confidence 368999985 46678999999986532 122 23567889999995 56899999999999999975
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-23 Score=201.56 Aligned_cols=127 Identities=28% Similarity=0.454 Sum_probs=109.4
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEEEec
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y~~Q 495 (554)
++++|+++.|+++.+++++||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecc
Confidence 4689999999888899999999999999999999999999999999999999999999988654 2578898
Q ss_pred ccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+.+..|+.||+...........+..++..+++.. ..++++..||||||||++|
T Consensus 81 ~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~l 136 (201)
T cd03231 81 AP--GIKTTLSVLENLRFWHADHSDEQVEEALARVGLNG-FEDRPVAQLSAGQQRRVAL 136 (201)
T ss_pred cc--ccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChh-hhcCchhhCCHHHHHHHHH
Confidence 75 46677899999876543334567888999999963 5689999999999999875
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-23 Score=204.36 Aligned_cols=127 Identities=25% Similarity=0.391 Sum_probs=108.2
Q ss_pred EEEeeeeEecCCc----cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEE
Q 008771 425 VTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPN 491 (554)
Q Consensus 425 l~~~~l~~~y~~~----~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~ 491 (554)
++++|+++.|++. .+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 6899999999865 799999999999999999999999999999999999999999999988654 267
Q ss_pred EEecccccCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|++|++ .+++..||.||+..... .. ....+..+++.+++. +.+++++..|||||||||+|
T Consensus 82 ~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 147 (218)
T cd03266 82 FVSDST--GLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME-ELLDRRVGGFSTGMRQKVAI 147 (218)
T ss_pred EecCCc--ccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhhhhhhcCHHHHHHHHH
Confidence 999986 46677899999865321 11 124578899999995 56889999999999999875
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-23 Score=210.25 Aligned_cols=130 Identities=31% Similarity=0.423 Sum_probs=109.7
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------- 488 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------- 488 (554)
..+|+++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred cceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 4579999999999887899999999999999999999999999999999999999999999987543
Q ss_pred eEEEEecccccCCCCCCCHHHHHHhhcc---cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 LPNYFEQNQAEALDLDKTVLETVAEAAE---DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.+|+..... ... ...+..+|..+++. +..++++..|||||||||+|
T Consensus 85 ~i~~v~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~l 154 (269)
T PRK11831 85 RMSMLFQSG--ALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR-GAAKLMPSELSGGMARRAAL 154 (269)
T ss_pred cEEEEeccc--ccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHH
Confidence 257999985 46677899999875321 111 23567789999996 46789999999999999875
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-23 Score=215.22 Aligned_cols=133 Identities=25% Similarity=0.434 Sum_probs=114.0
Q ss_pred CceEEEeeeeEecCC----------ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---
Q 008771 422 RSVVTIKNLEFGYED----------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--- 488 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~----------~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--- 488 (554)
+++|+++|+++.|+. ..++++|||+|.+||++||+|+||||||||+++|+|+++|.+|+|.++|.++
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 568999999999962 3689999999999999999999999999999999999999999999998654
Q ss_pred ----------eEEEEecccccCCCCCCCHHHHHHhhcc---cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhc
Q 008771 489 ----------LPNYFEQNQAEALDLDKTVLETVAEAAE---DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKII 551 (554)
Q Consensus 489 ----------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~R 551 (554)
.++|++|++...+++..||.+++.+... .. ....+.++|+.+|+..+.++++|..|||||+||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 3689999987678899999999865321 11 124678999999997667899999999999999
Q ss_pred ccC
Q 008771 552 LLY 554 (554)
Q Consensus 552 l~l 554 (554)
|+|
T Consensus 163 v~i 165 (327)
T PRK11308 163 IAI 165 (327)
T ss_pred HHH
Confidence 975
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=219.99 Aligned_cols=128 Identities=31% Similarity=0.488 Sum_probs=110.9
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEec
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q 495 (554)
.|+++|+++.|++..+|+++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|++|
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 48899999999887899999999999999999999999999999999999999999999988654 2689999
Q ss_pred ccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++..||.||+..... ... ...+..+|+.+++. +..++++..|||||||||+|
T Consensus 83 ~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~~~~~~LSgGq~QRvaL 144 (369)
T PRK11000 83 SY--ALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAI 144 (369)
T ss_pred Cc--ccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHH
Confidence 85 47788999999976532 111 24578899999995 56899999999999999975
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-23 Score=202.01 Aligned_cols=132 Identities=22% Similarity=0.336 Sum_probs=111.5
Q ss_pred CCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-------EEE
Q 008771 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------PNY 492 (554)
Q Consensus 420 ~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~-------~~y 492 (554)
.++++++++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++. ++|
T Consensus 7 ~~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 7 TAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred CCcceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 3457899999999998878999999999999999999999999999999999999999999999986542 679
Q ss_pred EecccccCCCCCCCHHHHHHhhcc--cC-CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAE--DW-RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~--~~-~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++ .+++..|+.+|+..... .. ....++.++..+++. +..++++..|||||||||+|
T Consensus 87 ~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 148 (214)
T PRK13543 87 LGHLP--GLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLA-GYEDTLVRQLSAGQKKRLAL 148 (214)
T ss_pred eecCc--ccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCCh-hhccCChhhCCHHHHHHHHH
Confidence 99875 36667799999865421 11 234567899999996 45789999999999999875
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-23 Score=213.11 Aligned_cols=130 Identities=29% Similarity=0.423 Sum_probs=109.7
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEE
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNY 492 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y 492 (554)
+.+|+++|+++.|++..+|+++||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 2 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 2 NVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred CcEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence 3578999999999887899999999999999999999999999999999999999999999988654 3689
Q ss_pred EecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++ .+++..||.+++..... ... ...+..++..+++. +..++++..|||||||||+|
T Consensus 82 v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~~~~~~~~~LSgG~~qrv~l 146 (303)
T TIGR01288 82 VPQFD--NLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADVRVALLSGGMKRRLTL 146 (303)
T ss_pred Eeccc--cCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCchhhCCHHHHHHHHH
Confidence 99985 46678899999864321 122 13466789999995 46789999999999999875
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-23 Score=199.14 Aligned_cols=130 Identities=29% Similarity=0.461 Sum_probs=110.9
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-----------EE
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~-----------~~ 491 (554)
++++++|++..|+...++++|||++.+||+++|+|+||+|||||||+|+|+.+|.+|+|.++|.++. ++
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 4689999999999988999999999999999999999999999999999999999999999998883 47
Q ss_pred EEecccccCCCCCCCHHHHHHhhccc-----CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAAED-----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~-----~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|++|-. .+++++||.|||.-+... ....++..+...|---.+..+++...|||||||-|+|
T Consensus 82 ~VPegR--~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAi 147 (237)
T COG0410 82 YVPEGR--RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAI 147 (237)
T ss_pred eCcccc--cchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHH
Confidence 999874 588999999999754321 1112266677777755677899999999999998874
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-23 Score=207.03 Aligned_cols=128 Identities=30% Similarity=0.479 Sum_probs=108.3
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEec
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q 495 (554)
.++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 37899999999888899999999999999999999999999999999999999999999988653 2679999
Q ss_pred ccccCCCCCCCHHHHHHhhcc--cC----C----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAE--DW----R----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~----~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++..||.+|+..... .. . ...+..+++.+++. +..++++..|||||||||+|
T Consensus 82 ~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~l 147 (239)
T cd03296 82 HY--ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD-WLADRYPAQLSGGQRQRVAL 147 (239)
T ss_pred CC--cccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHH
Confidence 86 36677899999875421 10 1 23567889999995 46789999999999999975
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=217.85 Aligned_cols=128 Identities=28% Similarity=0.428 Sum_probs=111.5
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEec
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q 495 (554)
.|+++|+++.|++..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 37899999999887899999999999999999999999999999999999999999999998765 3689999
Q ss_pred ccccCCCCCCCHHHHHHhhcc------cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAE------DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~------~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++..||.||+..... ... ...+..+|+.+++. +..++++..|||||||||+|
T Consensus 82 ~~--~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGq~QRval 147 (353)
T PRK10851 82 HY--ALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA-HLADRYPAQLSGGQKQRVAL 147 (353)
T ss_pred Cc--ccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHH
Confidence 85 57788999999986532 111 24678899999995 56899999999999999975
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-23 Score=204.13 Aligned_cols=128 Identities=31% Similarity=0.460 Sum_probs=107.2
Q ss_pred eEEEeeeeEecCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008771 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------- 488 (554)
+++++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 4789999999964 4699999999999999999999999999999999999999999999987543
Q ss_pred ---eEEEEecccccCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 ---LPNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ---~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.||+..... .. ....+..++..+++. +..++++..|||||||||+|
T Consensus 81 ~~~~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 152 (221)
T TIGR02211 81 RNKKLGFIYQFH--HLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-HRINHRPSELSGGERQRVAI 152 (221)
T ss_pred HHhcEEEEeccc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHH
Confidence 268999985 46677899999875321 11 123577899999996 46789999999999999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=206.64 Aligned_cols=127 Identities=30% Similarity=0.425 Sum_probs=107.2
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eEEEE
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPNYF 493 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----------~~~y~ 493 (554)
++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 4689999999877799999999999999999999999999999999999999999999988543 26799
Q ss_pred ecccccCCCCCCCHHHHHHhhcccC----------------CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAEDW----------------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~~~----------------~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++ .+++..||.+++....... ....+..++..+++. +..++++..|||||||||+|
T Consensus 81 ~q~~--~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~l 154 (236)
T cd03219 81 FQIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-DLADRPAGELSYGQQRRLEI 154 (236)
T ss_pred eccc--ccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-chhhCChhhCCHHHHHHHHH
Confidence 9985 3667789999987542110 123577889999996 46789999999999999875
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-23 Score=204.04 Aligned_cols=131 Identities=25% Similarity=0.422 Sum_probs=107.0
Q ss_pred eEEEeeeeEecCCc----cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008771 424 VVTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~~----~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------- 488 (554)
+++++|+++.|++. .+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 37899999999764 699999999999999999999999999999999999999999999988543
Q ss_pred --eEEEEecccccCCCCCCCHHHHHHhhcc----cCCH---HH-HHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 --LPNYFEQNQAEALDLDKTVLETVAEAAE----DWRI---DD-IKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 --~~~y~~Q~~~~~l~~~~tv~e~l~~~~~----~~~~---~~-~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++...+.+..||.+|+..... .... .. +..++..+++.....++++..|||||||||+|
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~l 156 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAI 156 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHH
Confidence 2679999864346678899999864321 1111 12 24788999996556789999999999999875
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-23 Score=212.19 Aligned_cols=130 Identities=31% Similarity=0.443 Sum_probs=111.3
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEE
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNY 492 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y 492 (554)
...++++|+++.|++..+++++||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 5 ~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 5 VAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred CceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 3579999999999988899999999999999999999999999999999999999999999998764 3689
Q ss_pred EecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++ .+++..||.||+..... ... ...+..+++.+++. +..++++..|||||||||+|
T Consensus 85 v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~l 149 (306)
T PRK13537 85 VPQFD--NLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-NKADAKVGELSGGMKRRLTL 149 (306)
T ss_pred EeccC--cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCchhhCCHHHHHHHHH
Confidence 99985 47788999999875322 111 23466889999995 46789999999999999875
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-23 Score=205.08 Aligned_cols=128 Identities=30% Similarity=0.465 Sum_probs=108.6
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEEEe
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFE 494 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y~~ 494 (554)
+++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 37899999999888899999999999999999999999999999999999999999999988654 367999
Q ss_pred cccccCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 495 QNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|++ .+++..|+.+|+..... .. ....+.+++..+++. +.+++++..|||||||||+|
T Consensus 81 q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~l 143 (236)
T TIGR03864 81 QQP--TLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA-ERADDKVRELNGGHRRRVEI 143 (236)
T ss_pred CCC--CCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHH
Confidence 985 35578899999865421 11 124577889999996 46789999999999999875
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-23 Score=207.38 Aligned_cols=127 Identities=31% Similarity=0.406 Sum_probs=107.5
Q ss_pred EEEeeeeEecC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------eE
Q 008771 425 VTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LP 490 (554)
Q Consensus 425 l~~~~l~~~y~-~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------------~~ 490 (554)
++++|+++.|+ ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 68999999997 67799999999999999999999999999999999999999999999988653 25
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcc--------------cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAE--------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~--------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++ .+++..||.+|+..... ......+..+++.+++. +..++++..|||||||||+|
T Consensus 82 ~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~l 156 (243)
T TIGR02315 82 GMIFQHY--NLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-DKAYQRADQLSGGQQQRVAI 156 (243)
T ss_pred EEEcCCC--cccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHH
Confidence 8999985 36677899999864321 11124577889999995 56789999999999999975
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-23 Score=189.73 Aligned_cols=191 Identities=25% Similarity=0.286 Sum_probs=147.7
Q ss_pred ccEEEEeEEEEeCC-eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEE
Q 008771 96 SGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~ 164 (554)
..|++.++.|+|.. .|++-|+|++++.|.+..+||.||||||||||+|+|-.-.-.|.|.+.|... ...
T Consensus 12 ~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~ 91 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLS 91 (291)
T ss_pred ceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCcee
Confidence 45999999999964 5899999999999999999999999999999999998777778888877532 122
Q ss_pred EEecc----------cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCccc
Q 008771 165 FLSQE----------FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (554)
Q Consensus 165 ~v~Q~----------~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (554)
|+--+ ..++.+.++..-+. .+..+.
T Consensus 92 YLGgeW~~~~~~agevplq~D~sae~mif---------------------------------------------gV~g~d 126 (291)
T KOG2355|consen 92 YLGGEWSKTVGIAGEVPLQGDISAEHMIF---------------------------------------------GVGGDD 126 (291)
T ss_pred EecccccccccccccccccccccHHHHHh---------------------------------------------hccCCC
Confidence 33211 11111122211110 111122
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEE
Q 008771 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (554)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvI 310 (554)
. ++-+++++-+.++ ..-.++.+|-|||+||.|+..|+..=++|||||-|-.||+-++..|.+++++ .|.|||
T Consensus 127 p-~Rre~LI~iLDId---l~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIV 202 (291)
T KOG2355|consen 127 P-ERREKLIDILDID---LRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIV 202 (291)
T ss_pred h-hHhhhhhhheecc---ceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEE
Confidence 2 3445556666654 2334678999999999999999999999999999999999999999999863 699999
Q ss_pred EEecCHHHHHhhcceEEEeeCCeee
Q 008771 311 IISHDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l~~g~~~ 335 (554)
+.||-.+=++.+.+++++|..|++.
T Consensus 203 YATHIFDGLe~Wpthl~yi~~Gkl~ 227 (291)
T KOG2355|consen 203 YATHIFDGLETWPTHLVYIKSGKLV 227 (291)
T ss_pred EEeeeccchhhcchhEEEecCCeee
Confidence 9999999999999999999999985
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-23 Score=203.66 Aligned_cols=130 Identities=29% Similarity=0.393 Sum_probs=108.9
Q ss_pred CceEEEeeeeEecCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------
Q 008771 422 RSVVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------- 488 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------- 488 (554)
+++|+++|+++.|++ ..+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 357999999999975 2589999999999999999999999999999999999999999999987543
Q ss_pred -----eEEEEecccccCCCCCCCHHHHHHhhc--cc----CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 -----LPNYFEQNQAEALDLDKTVLETVAEAA--ED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 -----~~~y~~Q~~~~~l~~~~tv~e~l~~~~--~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..|+.||+.... .. ....++..++..+++. +..++++..|||||||||+|
T Consensus 84 ~~~~~~i~~~~q~~--~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrl~l 157 (228)
T PRK10584 84 KLRAKHVGFVFQSF--MLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLG-KRLDHLPAQLSGGEQQRVAL 157 (228)
T ss_pred HHHhheEEEEEccc--ccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHH
Confidence 367999985 4667789999986532 11 1134678899999995 56789999999999999875
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-23 Score=216.64 Aligned_cols=127 Identities=28% Similarity=0.411 Sum_probs=111.2
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCc--eEEEECCcee--------eEEEEe
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG--GEVLLGEHNV--------LPNYFE 494 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~--G~i~~~~~~~--------~~~y~~ 494 (554)
|+++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+++|++ |+|.++|.++ .++|++
T Consensus 6 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vf 85 (362)
T TIGR03258 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLF 85 (362)
T ss_pred EEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEE
Confidence 789999999988789999999999999999999999999999999999999999 9999998654 368999
Q ss_pred cccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 495 QNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|++ .+++.+||.||+..+.. ... ...+.++++.+++. +..++++..|||||||||+|
T Consensus 86 Q~~--~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSgGq~QRvaL 148 (362)
T TIGR03258 86 QNY--ALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG-DAAAHLPAQLSGGMQQRIAI 148 (362)
T ss_pred CCc--ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-chhhCChhhCCHHHHHHHHH
Confidence 986 47799999999986542 111 23578899999995 56899999999999999985
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-23 Score=206.48 Aligned_cols=127 Identities=29% Similarity=0.410 Sum_probs=106.9
Q ss_pred EEEeeeeEecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------eE
Q 008771 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LP 490 (554)
Q Consensus 425 l~~~~l~~~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------------~~ 490 (554)
++++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 468999999986 7799999999999999999999999999999999999999999999988543 25
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcc--------------cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAE--------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~--------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++ .+++..||.+|+..... ......+..++..+++. +..++++..|||||||||+|
T Consensus 81 ~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 155 (241)
T cd03256 81 GMIFQQF--NLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-DKAYQRADQLSGGQQQRVAI 155 (241)
T ss_pred EEEcccC--cccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-hhhCCCcccCCHHHHHHHHH
Confidence 7999985 46677899999864321 11134577889999995 46789999999999999875
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-23 Score=199.63 Aligned_cols=127 Identities=28% Similarity=0.413 Sum_probs=107.7
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEEEec
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y~~Q 495 (554)
++++|+++.|+++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ ..+|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEecc
Confidence 4689999999888899999999999999999999999999999999999999999999998654 2578888
Q ss_pred ccccCCCCCCCHHHHHHhhcc--cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++..||.+|+..... ......+..+++.+++. +..++++..|||||||||+|
T Consensus 81 ~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 138 (198)
T TIGR01189 81 LP--GLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLT-GFEDLPAAQLSAGQQRRLAL 138 (198)
T ss_pred Cc--ccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCH-HHhcCChhhcCHHHHHHHHH
Confidence 64 46677899999875432 11234578899999996 45789999999999999875
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-23 Score=212.42 Aligned_cols=135 Identities=24% Similarity=0.277 Sum_probs=111.0
Q ss_pred CCCCceEEEeeeeEecCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----
Q 008771 419 RSGRSVVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----- 488 (554)
Q Consensus 419 ~~~~~~l~~~~l~~~y~~-----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----- 488 (554)
..++++|+++|++|.|++ ..+|+++||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 16 ~~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~ 95 (320)
T PRK13631 16 LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKN 95 (320)
T ss_pred CCCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccc
Confidence 356788999999999974 2599999999999999999999999999999999999999999999986432
Q ss_pred ---------------------eEEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhcccc
Q 008771 489 ---------------------LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKV 541 (554)
Q Consensus 489 ---------------------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~ 541 (554)
.++|++|++...++ ..||.+|+..+.. ... ...+..++..+++..+..++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLF-KDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred cccccccccccccchHHHHHhcEEEEEECchhccc-cchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 25799998744454 4599999975421 111 2356788999999655688999
Q ss_pred CcCChhhhhcccC
Q 008771 542 SLLSGGEKIILLY 554 (554)
Q Consensus 542 ~~LSGGek~Rl~l 554 (554)
..|||||||||+|
T Consensus 175 ~~LSgGqkqRvai 187 (320)
T PRK13631 175 FGLSGGQKRRVAI 187 (320)
T ss_pred ccCCHHHHHHHHH
Confidence 9999999999975
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-23 Score=211.87 Aligned_cols=130 Identities=20% Similarity=0.247 Sum_probs=107.8
Q ss_pred eEEEeeeeEecCCc-----cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008771 424 VVTIKNLEFGYEDR-----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~~-----~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------- 488 (554)
.|+++|+++.|++. .+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 37899999999742 589999999999999999999999999999999999999999999975321
Q ss_pred ------------------------eEEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhc
Q 008771 489 ------------------------LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLD 538 (554)
Q Consensus 489 ------------------------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~ 538 (554)
.++|++|++...+ +..||.||+..... ... ...+..+++.+|+..+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQL-FEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCccccc-ccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 2589999864445 45799999975432 111 2457889999999756789
Q ss_pred cccCcCChhhhhcccC
Q 008771 539 RKVSLLSGGEKIILLY 554 (554)
Q Consensus 539 ~~~~~LSGGek~Rl~l 554 (554)
+++..|||||||||+|
T Consensus 161 ~~~~~LSgGqkqrval 176 (305)
T PRK13651 161 RSPFELSGGQKRRVAL 176 (305)
T ss_pred CChhhCCHHHHHHHHH
Confidence 9999999999999975
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-23 Score=202.68 Aligned_cols=127 Identities=31% Similarity=0.429 Sum_probs=107.4
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------eEEE
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------LPNY 492 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------~~~y 492 (554)
++++|+++.|+++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 4689999999887899999999999999999999999999999999999999999999998654 2579
Q ss_pred EecccccCCCCCCCHHHHHHhhc---ccCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAA---EDWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++ .+++..|+.||+.... .... ...+..++..+++. ...++++..|||||+|||+|
T Consensus 81 ~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 146 (213)
T cd03262 81 VFQQF--NLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA-DKADAYPAQLSGGQQQRVAI 146 (213)
T ss_pred Eeccc--ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhhCccccCHHHHHHHHH
Confidence 99986 3667789999987532 1111 23567889999995 46789999999999999875
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-23 Score=212.03 Aligned_cols=129 Identities=27% Similarity=0.373 Sum_probs=108.1
Q ss_pred EEEeeeeEecCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008771 425 VTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (554)
Q Consensus 425 l~~~~l~~~y~~-----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------- 488 (554)
++++|+++.|++ ..+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 789999999964 4699999999999999999999999999999999999999999999998654
Q ss_pred ---eEEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 ---LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ---~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++...++ ..||.+|+..... ... ...+..+|+.+++..+..++++..|||||||||+|
T Consensus 83 ~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~l 156 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAI 156 (290)
T ss_pred HHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHH
Confidence 26899998644454 5799999975422 111 23567889999997556789999999999999975
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-23 Score=208.24 Aligned_cols=132 Identities=30% Similarity=0.404 Sum_probs=111.6
Q ss_pred CCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------e
Q 008771 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------L 489 (554)
Q Consensus 420 ~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~ 489 (554)
..++.|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .
T Consensus 7 ~~~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 7 HSDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred CCCceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 346789999999999877899999999999999999999999999999999999999999999998654 2
Q ss_pred EEEEecccccCCCCCCCHHHHHHhhcc----------cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 490 PNYFEQNQAEALDLDKTVLETVAEAAE----------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~----------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++|++ .+.+..||.+|+..... ......+..+++.+++. +..++++..|||||||||+|
T Consensus 87 i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~l 158 (265)
T PRK10575 87 VAYLPQQL--PAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK-PLAHRLVDSLSGGERQRAWI 158 (265)
T ss_pred eEEeccCC--CCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCCHHHHHHHHH
Confidence 67999975 35577899999975321 01124578899999995 56889999999999999875
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-23 Score=203.53 Aligned_cols=127 Identities=28% Similarity=0.383 Sum_probs=107.3
Q ss_pred EEEeeeeEecCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEEE
Q 008771 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYF 493 (554)
Q Consensus 425 l~~~~l~~~y~~--~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y~ 493 (554)
|+++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 468999999976 6799999999999999999999999999999999999999999999988654 25799
Q ss_pred ecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++ .+++..||.+|+..... ... ...+.+++..+++. +..++++..|||||+|||+|
T Consensus 81 ~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 144 (220)
T cd03263 81 PQFD--ALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSL 144 (220)
T ss_pred cCcC--CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhChhhhCCHHHHHHHHH
Confidence 9985 46678899999875421 111 23567889999995 56789999999999999875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-23 Score=202.66 Aligned_cols=130 Identities=27% Similarity=0.417 Sum_probs=109.2
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEE
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPN 491 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~ 491 (554)
+++|+++|+++.|+++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 4579999999999887899999999999999999999999999999999999999999999998653 357
Q ss_pred EEecccccCCCCCCCHHHHHHhhc---c-cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAA---E-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~---~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|++|++. +++ .||.||+.... . ......+..++..+++.....++++..|||||+|||+|
T Consensus 85 ~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~l 148 (225)
T PRK10247 85 YCAQTPT--LFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISL 148 (225)
T ss_pred EEecccc--ccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHH
Confidence 9999853 444 59999986431 1 11234567899999996556789999999999999875
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-23 Score=202.76 Aligned_cols=127 Identities=27% Similarity=0.413 Sum_probs=107.1
Q ss_pred EEEeeeeEec-CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------eE
Q 008771 425 VTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LP 490 (554)
Q Consensus 425 l~~~~l~~~y-~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------------~~ 490 (554)
++++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 6899999999 566799999999999999999999999999999999999999999999988644 25
Q ss_pred EEEecccccCCCCCCCHHHHHHhhc--ccCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAA--EDWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~--~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++ .+++..|+.+|+.... .... ...+..+++.+++. +.+++++..|||||||||+|
T Consensus 82 ~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 82 GMIFQDH--HLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLL-DKAKNFPIQLSGGEQQRVGI 148 (222)
T ss_pred EEEecCc--cccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCCchhCCHHHHHHHHH
Confidence 7999986 3567789999987542 1111 23467889999996 46789999999999999875
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-23 Score=239.05 Aligned_cols=209 Identities=23% Similarity=0.298 Sum_probs=161.7
Q ss_pred cEEEEeEEEEe----CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC--CCceeEEEcCCCc-------eE
Q 008771 97 GVKLENISKSY----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--PDSGNVIKAKSNM-------KI 163 (554)
Q Consensus 97 ~i~~~~ls~~y----~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--p~~G~I~~~~~~~-------~i 163 (554)
.....|+.+.- +.+.+|+||+=-++||-.+||+|+|||||||||++|+|-.. ..+|+|.++|... .+
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~ 866 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVS 866 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhcccc
Confidence 34455555444 34579999999999999999999999999999999999754 3578899998643 59
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
|||.|+..-.+..||+|-+.... . + +....++..+..+.+++++
T Consensus 867 GYvqQ~DiH~~~~TVrESL~fSA--------~-------L---------------------Rlp~~v~~~ek~~yVe~Vi 910 (1391)
T KOG0065|consen 867 GYVEQQDIHSPELTVRESLRFSA--------A-------L---------------------RLPKEVSDEEKYEYVEEVI 910 (1391)
T ss_pred ceeecccccCcccchHHHHHHHH--------H-------H---------------------cCCCcCCHHHHHHHHHHHH
Confidence 99999987778999999764211 0 0 0111223334446678888
Q ss_pred hhcCCCccccCCCCCC----CChhHHHHHHHHHHHccCC-CeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecC
Q 008771 244 PELGFTADDGDRLVAS----FSSGWQMRMSLGKILLQDP-DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHD 315 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~----LSGGqrqRv~LAraL~~~p-~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd 315 (554)
+.++|+ ...+..+.. ||..||+|+.||--|+.+| -||+|||||||||..+...+.+.++ +.|.|||.+=|.
T Consensus 911 ~lleL~-~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQ 989 (1391)
T KOG0065|consen 911 ELLELK-EYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQ 989 (1391)
T ss_pred HHhCch-hhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 888886 234444544 9999999999999999999 8999999999999999888877765 479999999999
Q ss_pred HH-HHHhhcceEEEeeCCeeeeccCChh
Q 008771 316 RA-FLDQLCTKIVETEMGVSRTYEGNYS 342 (554)
Q Consensus 316 ~~-~l~~~~d~i~~l~~g~~~~~~G~~~ 342 (554)
++ .+.+-.|+++.|..|.-.+|.|+..
T Consensus 990 PS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 990 PSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred CcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 84 4556689999998877777877543
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-23 Score=205.85 Aligned_cols=132 Identities=21% Similarity=0.277 Sum_probs=110.9
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce-----e---------
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----V--------- 488 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~-----~--------- 488 (554)
.+++++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 46999999999988789999999999999999999999999999999999999999999998865 2
Q ss_pred -----eEEEEecccccCCCCCCCHHHHHHhhc---c--c--CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 -----LPNYFEQNQAEALDLDKTVLETVAEAA---E--D--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 -----~~~y~~Q~~~~~l~~~~tv~e~l~~~~---~--~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++...+.+..|+.+++.+.. . . .....+.+++..+++..+.+++++..|||||+|||+|
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~l 162 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQI 162 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHH
Confidence 267999987545677789998876421 1 1 1124567889999996556789999999999999975
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-24 Score=202.35 Aligned_cols=129 Identities=29% Similarity=0.385 Sum_probs=111.6
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-----------E
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------P 490 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~-----------~ 490 (554)
.++++++++++.|++-.++++|||+|.+||+++|+||||+|||||+++|+|.++|++|+|.++|.++. +
T Consensus 2 ~~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 2 TPLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred CceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 46789999999999988999999999999999999999999999999999999999999999998762 2
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcc------------------cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcc
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAE------------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIIL 552 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~------------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl 552 (554)
..-+|++ .+++++||.||+.-+.. ....+++..+|+.+|+. +.++++..+||+|||+||
T Consensus 82 ~RTFQ~~--rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~-~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 82 ARTFQIT--RLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG-ELADRPAGNLSYGQQRRL 158 (250)
T ss_pred eeecccc--cccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc-hhhcchhhcCChhHhHHH
Confidence 3458886 58899999999876521 11124688999999995 578999999999999997
Q ss_pred c
Q 008771 553 L 553 (554)
Q Consensus 553 ~ 553 (554)
-
T Consensus 159 E 159 (250)
T COG0411 159 E 159 (250)
T ss_pred H
Confidence 4
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-23 Score=197.76 Aligned_cols=127 Identities=26% Similarity=0.415 Sum_probs=108.3
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEEEec
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y~~Q 495 (554)
|+++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q 81 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGH 81 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEecc
Confidence 6899999999887899999999999999999999999999999999999999999999998654 2578888
Q ss_pred ccccCCCCCCCHHHHHHhhcc-cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAE-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++..||.+|+..... ......+..+++.+++. +..++++..|||||+|||+|
T Consensus 82 ~~--~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rv~l 138 (200)
T PRK13540 82 RS--GINPYLTLRENCLYDIHFSPGAVGITELCRLFSLE-HLIDYPCGLLSSGQKRQVAL 138 (200)
T ss_pred cc--ccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCc-hhhhCChhhcCHHHHHHHHH
Confidence 74 36678999999875421 12234678899999985 45688999999999999875
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-23 Score=203.43 Aligned_cols=127 Identities=31% Similarity=0.423 Sum_probs=107.8
Q ss_pred EEEeeeeEecCCc----cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008771 425 VTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (554)
Q Consensus 425 l~~~~l~~~y~~~----~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------ 488 (554)
|+++|+++.|+++ .+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999865 799999999999999999999999999999999999999999999988654
Q ss_pred -eEEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 -LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 -~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..|+.||+..... ... ...+..+++.+++. +..++++..|||||||||+|
T Consensus 82 ~~i~~~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 151 (233)
T cd03258 82 RRIGMIFQHF--NLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE-DKADAYPAQLSGGQKQRVGI 151 (233)
T ss_pred hheEEEccCc--ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhcChhhCCHHHHHHHHH
Confidence 257999985 36677899999875421 111 23578899999995 56789999999999999875
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-23 Score=205.69 Aligned_cols=128 Identities=31% Similarity=0.431 Sum_probs=108.7
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEEEE
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~y~ 493 (554)
+|+++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 47899999999887899999999999999999999999999999999999999999999988643 25799
Q ss_pred ecccccCCCCCCCHHHHHHhhccc------CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++ .+.+..||.||+...... .....+..+|..+++. +..++++..|||||||||+|
T Consensus 82 ~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGe~qrv~l 145 (258)
T PRK13548 82 PQHS--SLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA-HLAGRDYPQLSGGEQQRVQL 145 (258)
T ss_pred ccCC--cCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHH
Confidence 9985 355678999998764321 1123577889999995 46789999999999999975
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-23 Score=209.31 Aligned_cols=130 Identities=26% Similarity=0.395 Sum_probs=107.7
Q ss_pred eEEEeeeeEecCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008771 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~-----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------- 488 (554)
.|+++|+++.|++ +.+++++||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 3789999999974 3699999999999999999999999999999999999999999999998654
Q ss_pred --eEEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCCh-hhhccccCcCChhhhhcccC
Q 008771 489 --LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKA-DMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 --~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~-~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++...+ +..||.+|+..... ... ...+..+|+.+++.. +..++++..|||||||||+|
T Consensus 82 ~~~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 82 RKKVGLVFQYPEYQL-FEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred hhceEEEecCchhcc-ccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHH
Confidence 2589999864334 45799999975421 111 235788999999962 46789999999999999875
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-24 Score=193.09 Aligned_cols=127 Identities=31% Similarity=0.487 Sum_probs=106.3
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee----------EEEEe
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYFE 494 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~----------~~y~~ 494 (554)
++++++...-++..+++++||.+.+||+++|+||+|||||||+|+++-+..|++|++.|.|.++. +.|+.
T Consensus 4 le~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~ 83 (223)
T COG4619 4 LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCA 83 (223)
T ss_pred hHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHH
Confidence 34455544445678999999999999999999999999999999999999999999999998874 35889
Q ss_pred cccccCCCCCCCHHHHHHhhc----ccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 495 QNQAEALDLDKTVLETVAEAA----EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~----~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|.|. | +..||+||+.... .......+...|++|+++...+++++..||||||||.+|
T Consensus 84 Q~pa--L-fg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAl 144 (223)
T COG4619 84 QTPA--L-FGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIAL 144 (223)
T ss_pred cCcc--c-cccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHH
Confidence 9863 5 4469999986542 233456688899999999889999999999999999875
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-23 Score=203.27 Aligned_cols=127 Identities=30% Similarity=0.490 Sum_probs=107.2
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eEEEE
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPNYF 493 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----------~~~y~ 493 (554)
++++|+++.|+++.+++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 4689999999887899999999999999999999999999999999999999999999987543 25799
Q ss_pred ecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++ .+++..||.+|+..... ... ...+..++..+++. +..++++..|||||||||+|
T Consensus 81 ~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~l 144 (232)
T cd03218 81 PQEA--SIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-HLRKSKASSLSGGERRRVEI 144 (232)
T ss_pred cCCc--cccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHH
Confidence 9985 46677899999875421 111 23467889999996 56789999999999999875
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-23 Score=212.31 Aligned_cols=132 Identities=29% Similarity=0.399 Sum_probs=112.0
Q ss_pred CCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eE
Q 008771 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LP 490 (554)
Q Consensus 420 ~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~ 490 (554)
.+.++|+++|+++.|+++.+++++||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 37 ~~~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 37 MSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116 (340)
T ss_pred CCceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccE
Confidence 345689999999999988899999999999999999999999999999999999999999999998754 36
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++ .+++..||.|++..... ... ...+..+++.+++. +..++++..|||||||||+|
T Consensus 117 g~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~-~~~~~~~~~LS~G~kqrv~l 183 (340)
T PRK13536 117 GVVPQFD--NLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADARVSDLSGGMKRRLTL 183 (340)
T ss_pred EEEeCCc--cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhCCChhhCCHHHHHHHHH
Confidence 8999985 46678999999875321 111 13456789999996 46789999999999999875
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-23 Score=208.98 Aligned_cols=129 Identities=26% Similarity=0.352 Sum_probs=107.6
Q ss_pred EEEeeeeEecCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008771 425 VTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (554)
Q Consensus 425 l~~~~l~~~y~~-----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------- 488 (554)
|+++|+++.|+. +.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|+++|.++
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999963 2489999999999999999999999999999999999999999999998654
Q ss_pred ---eEEEEecccccCCCCCCCHHHHHHhhccc--CC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 ---LPNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ---~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++...++ ..||.+|+...... .. ...+.++|+.+++..+..++++..|||||||||+|
T Consensus 82 ~~~~ig~v~q~~~~~l~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvai 155 (288)
T PRK13643 82 VRKKVGVVFQFPESQLF-EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAI 155 (288)
T ss_pred HHhhEEEEecCcchhcc-cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHH
Confidence 25899998744454 46999999765321 11 23567889999996556789999999999999975
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-23 Score=200.85 Aligned_cols=127 Identities=29% Similarity=0.353 Sum_probs=106.5
Q ss_pred EEEeeeeEecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------eE
Q 008771 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LP 490 (554)
Q Consensus 425 l~~~~l~~~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------------~~ 490 (554)
++++|+++.|++ +.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 468999999964 5799999999999999999999999999999999999999999999988643 25
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++ .+++..|+.+|+..... ... ...+..++..+++. +..++++..||||||||++|
T Consensus 81 ~~v~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 147 (214)
T cd03292 81 GVVFQDF--RLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLS-HKHRALPAELSGGEQQRVAI 147 (214)
T ss_pred EEEecCc--hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHH
Confidence 7999985 46677899999876421 111 23577889999995 45789999999999999875
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-23 Score=200.77 Aligned_cols=127 Identities=37% Similarity=0.506 Sum_probs=105.2
Q ss_pred EEeeeeEecCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEEEE
Q 008771 426 TIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (554)
Q Consensus 426 ~~~~l~~~y~~--~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~y~ 493 (554)
+++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999987 6799999999999999999999999999999999999999999999988654 25799
Q ss_pred ecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++. ...+..||.+|+..... ... ...+..+++.+++. +.+++++..|||||||||+|
T Consensus 81 ~q~~~-~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~l 145 (211)
T cd03225 81 FQNPD-DQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE-GLRDRSPFTLSGGQKQRVAI 145 (211)
T ss_pred ecChh-hhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHH
Confidence 99853 22356899999875421 111 23577899999995 56789999999999999875
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-23 Score=204.69 Aligned_cols=128 Identities=26% Similarity=0.340 Sum_probs=108.1
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------------
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------------- 488 (554)
.++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 37899999999887899999999999999999999999999999999999999999999988643
Q ss_pred -eEEEEecccccCCCCCCCHHHHHHhhc---ccC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 -LPNYFEQNQAEALDLDKTVLETVAEAA---EDW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 -~~~y~~Q~~~~~l~~~~tv~e~l~~~~---~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.+|+.... ... ....+..++..+|+. +.+++++..|||||||||+|
T Consensus 82 ~~i~~~~q~~--~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 82 RNVGMVFQQY--NLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-PYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred hheEEEecCc--cccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHH
Confidence 257999985 4667789999986421 111 124578889999995 46789999999999999875
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-23 Score=188.26 Aligned_cols=128 Identities=31% Similarity=0.419 Sum_probs=109.8
Q ss_pred eEEEeeeeEecCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008771 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------- 488 (554)
+|+++++++..++ ..++++|+|.|.+||.+|||||+||||||||-+++|+..|++|+|++.|+++
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 7888888887653 3689999999999999999999999999999999999999999999998766
Q ss_pred ---eEEEEecccccCCCCCCCHHHHHHhhcc------cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 ---LPNYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ---~~~y~~Q~~~~~l~~~~tv~e~l~~~~~------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.+|+++|.. .|-+++|..||++.... ......++.+|+++|+. +.+...|.+|||||+|||+|
T Consensus 86 R~~~vGfVFQSF--~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg-~Rl~HyP~qLSGGEQQRVAi 157 (228)
T COG4181 86 RARHVGFVFQSF--HLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLG-KRLTHYPAQLSGGEQQRVAL 157 (228)
T ss_pred hccceeEEEEee--eccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcc-cccccCccccCchHHHHHHH
Confidence 368999974 57799999999875432 12235689999999995 56899999999999999985
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-23 Score=205.12 Aligned_cols=128 Identities=29% Similarity=0.448 Sum_probs=108.0
Q ss_pred EEEeeeeEecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEEEE
Q 008771 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (554)
Q Consensus 425 l~~~~l~~~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~y~ 493 (554)
++++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 468999999987 7799999999999999999999999999999999999999999999988654 25799
Q ss_pred ecccccCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCCh-hhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKA-DMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~-~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++ .+++..||.+|+..... .. ....+.+++..+++.. +..++++..|||||||||+|
T Consensus 81 ~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~l 146 (242)
T cd03295 81 IQQI--GLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGV 146 (242)
T ss_pred ccCc--cccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHH
Confidence 9985 46677899999875421 11 1245788999999974 46789999999999999875
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-23 Score=210.34 Aligned_cols=130 Identities=24% Similarity=0.320 Sum_probs=108.0
Q ss_pred eEEEeeeeEecCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008771 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~-----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------- 488 (554)
.++++|+++.|++ +.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 3789999999963 3599999999999999999999999999999999999999999999998654
Q ss_pred ----eEEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 ----LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ----~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++...++. .||.+|+..... ... ...+..+|..+|+..+..++++..|||||||||+|
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~l 156 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAI 156 (286)
T ss_pred HHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 258999986444543 599999975421 111 24577899999996556789999999999999875
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-23 Score=213.57 Aligned_cols=127 Identities=31% Similarity=0.398 Sum_probs=108.2
Q ss_pred EEEeeeeEecC----CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008771 425 VTIKNLEFGYE----DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (554)
Q Consensus 425 l~~~~l~~~y~----~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------ 488 (554)
|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997 35799999999999999999999999999999999999999999999998653
Q ss_pred -eEEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 -LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 -~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.+|+..... ... ...+..++..+++. +..++++..|||||||||+|
T Consensus 82 ~~ig~v~q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~l 151 (343)
T PRK11153 82 RQIGMIFQHF--NLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS-DKADRYPAQLSGGQKQRVAI 151 (343)
T ss_pred cCEEEEeCCC--ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHH
Confidence 268999986 37678999999876421 111 23577889999995 46789999999999999875
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-23 Score=198.02 Aligned_cols=128 Identities=28% Similarity=0.394 Sum_probs=108.7
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------eEEEEecc
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQN 496 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------~~~y~~Q~ 496 (554)
+++++|+++.|+++.+++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ ..+|++|+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCC
Confidence 47899999999887899999999999999999999999999999999999999999999988653 24788876
Q ss_pred cccCCCCCCCHHHHHHhhcc--cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 497 QAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+ .+++..||.+|+..... ......+..++..+++.. ..++++..|||||||||+|
T Consensus 82 ~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~l 138 (207)
T PRK13539 82 N--AMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP-LAHLPFGYLSAGQKRRVAL 138 (207)
T ss_pred C--cCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-HHcCChhhcCHHHHHHHHH
Confidence 4 46678899999865321 233456889999999964 5789999999999999874
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-23 Score=209.63 Aligned_cols=128 Identities=34% Similarity=0.489 Sum_probs=112.1
Q ss_pred eEEEeeeeEecC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEEE
Q 008771 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYF 493 (554)
Q Consensus 424 ~l~~~~l~~~y~-~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y~ 493 (554)
.++++|+++.|+ ++.++++|||+|++||++||+||||||||||+|+|+|+.+|++|+|.+.|.++ .+||+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 578899999999 68999999999999999999999999999999999999999999999998654 36999
Q ss_pred ecccccCCCCCCCHHHHHHhhcc--c----CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAE--D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++. +++..||.|++..... . .....+..+|..+++.. ..++++..||+||||||.|
T Consensus 84 ~~~~~--~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~i 147 (293)
T COG1131 84 PQEPS--LYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSI 147 (293)
T ss_pred ccCCC--CCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHH
Confidence 99863 8899999999976532 1 22457899999999976 3488999999999999864
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-23 Score=203.94 Aligned_cols=127 Identities=28% Similarity=0.355 Sum_probs=107.8
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------eEEE
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------LPNY 492 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------~~~y 492 (554)
++++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 81 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGM 81 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEE
Confidence 6899999999877899999999999999999999999999999999999999999999998654 2579
Q ss_pred EecccccCCCCCCCHHHHHHhhcc---cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAE---DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~---~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++ .+++..||.+|+..... .. ....+.++++.+++. +.+++++..|||||||||+|
T Consensus 82 ~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 82 VFQQF--YLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-ERAHHYPSELSGGQQQRVAI 147 (240)
T ss_pred Eeccc--ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh-HHHhcChhhcCHHHHHHHHH
Confidence 99985 46677899999865321 11 123567899999995 46789999999999999875
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-23 Score=216.93 Aligned_cols=129 Identities=26% Similarity=0.472 Sum_probs=110.8
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEEE
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNY 492 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~y 492 (554)
++|+++|+++.|+++.+++++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ .++|
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 368999999999988899999999999999999999999999999999999999999999998654 2689
Q ss_pred EecccccCCCCCCCHHHHHHhhcc----c------CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAE----D------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~----~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++ .++++.||.|++..... . .....+..+|+.+++. +..++++..|||||||||+|
T Consensus 82 v~q~~--~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-~~~~~~~~~LSgGerQRv~I 150 (402)
T PRK09536 82 VPQDT--SLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-QFADRPVTSLSGGERQRVLL 150 (402)
T ss_pred EccCC--CCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHH
Confidence 99985 46678999999875421 0 1124578899999995 57899999999999999875
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-23 Score=208.05 Aligned_cols=130 Identities=22% Similarity=0.352 Sum_probs=107.7
Q ss_pred eEEEeeeeEecCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008771 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~-----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------- 488 (554)
.|+++|+++.|++ +.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4789999999973 3599999999999999999999999999999999999999999999998653
Q ss_pred ----eEEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 ----LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ----~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++...++ ..||.||+..... ... ...+..+|..+++..+..++++..|||||||||+|
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~l 156 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAI 156 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHH
Confidence 25799998643343 5799999975321 111 23578889999996456789999999999999975
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.5e-23 Score=203.41 Aligned_cols=128 Identities=25% Similarity=0.343 Sum_probs=108.3
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEEEE
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~y~ 493 (554)
.++++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence 37899999999877899999999999999999999999999999999999999999999998654 26799
Q ss_pred ecccccCCCCCCCHHHHHHhhcc--cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++. ++. .||.+|+..... .....++..++..+++..+..++++..|||||||||+|
T Consensus 83 ~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l 142 (241)
T PRK14250 83 FQQPH--LFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSI 142 (241)
T ss_pred ecCch--hch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHH
Confidence 99863 433 699999875321 12235678899999996556789999999999999875
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-23 Score=206.27 Aligned_cols=133 Identities=25% Similarity=0.373 Sum_probs=109.5
Q ss_pred CceEEEeeeeEecCC---------ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----
Q 008771 422 RSVVTIKNLEFGYED---------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---- 488 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~---------~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---- 488 (554)
+++|+++|+++.|+. ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc
Confidence 357999999999962 4699999999999999999999999999999999999999999999988554
Q ss_pred ------eEEEEecccccCCCCCCCHHHHHHhhcc---cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 ------LPNYFEQNQAEALDLDKTVLETVAEAAE---DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++...+.+..|+.+++..... .. ..+.+..+++.+++..+..++++..|||||||||+|
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~l 160 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGL 160 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHH
Confidence 2679999864446677799998764211 11 124578899999996566788999999999999975
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-23 Score=204.88 Aligned_cols=130 Identities=26% Similarity=0.386 Sum_probs=109.4
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eE
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LP 490 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----------~~ 490 (554)
+++++++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 3 QPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred CceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 3579999999999888899999999999999999999999999999999999999999999998653 25
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcc------------------cC---CHHHHHHHHhhCCCChhhhccccCcCChhhh
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAE------------------DW---RIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~------------------~~---~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek 549 (554)
+|++|++ .+++..||.+|+..... .. ....+..++..+++. +..++++..||||||
T Consensus 83 ~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 83 VRTFQHV--RLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-EHANRQAGNLAYGQQ 159 (255)
T ss_pred EEeccCc--ccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-hhhhCChhhCCHHHH
Confidence 6789985 47678899999875321 00 113567789999994 568999999999999
Q ss_pred hcccC
Q 008771 550 IILLY 554 (554)
Q Consensus 550 ~Rl~l 554 (554)
|||+|
T Consensus 160 qrv~l 164 (255)
T PRK11300 160 RRLEI 164 (255)
T ss_pred HHHHH
Confidence 99875
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.89 E-value=8e-23 Score=204.19 Aligned_cols=132 Identities=20% Similarity=0.241 Sum_probs=109.7
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce-----e---------
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----V--------- 488 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~-----~--------- 488 (554)
+.|+++|+++.|++..+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 46899999999987779999999999999999999999999999999999999999999998754 2
Q ss_pred -----eEEEEecccccCCCCCCCHHHHHHhhc---c--c--CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 -----LPNYFEQNQAEALDLDKTVLETVAEAA---E--D--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 -----~~~y~~Q~~~~~l~~~~tv~e~l~~~~---~--~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++...+.+..|+.+++.... . . .....+..++..+++..+..++++..|||||||||+|
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~l 159 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQI 159 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHH
Confidence 258999986444556678888875421 1 1 1134678899999996557889999999999999975
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-23 Score=201.60 Aligned_cols=127 Identities=29% Similarity=0.440 Sum_probs=105.6
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eEEEE
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPNYF 493 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----------~~~y~ 493 (554)
|+++|+++.|++..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 4689999999887899999999999999999999999999999999999999999999988543 26799
Q ss_pred ecccccCCCCCCCHHHHHHhhccc----CCHHHHHHHHhhC-CCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAED----WRIDDIKGLLGRC-NFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~~----~~~~~~~~~L~~~-~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++ .+++..|+.+|+...... .....+..++..+ ++ .+..++++..|||||||||+|
T Consensus 81 ~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~~~~LS~G~~qrv~l 143 (222)
T cd03224 81 PEGR--RIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRL-KERRKQLAGTLSGGEQQMLAI 143 (222)
T ss_pred cccc--ccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhh-hhhhhCchhhCCHHHHHHHHH
Confidence 9985 466778999999765321 1123456778877 45 456789999999999999875
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-23 Score=203.05 Aligned_cols=128 Identities=30% Similarity=0.419 Sum_probs=109.1
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eEEE
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPNY 492 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----------~~~y 492 (554)
+++++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 58899999999877899999999999999999999999999999999999999999999998644 2679
Q ss_pred EecccccCCCCCCCHHHHHHhhccc--------------CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAED--------------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~~--------------~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++ .+++..||.||+...... .....+..++..+++. +..++++..|||||+|||+|
T Consensus 82 ~~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrv~l 154 (242)
T TIGR03411 82 KFQKP--TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA-DEADRLAGLLSHGQKQWLEI 154 (242)
T ss_pred ecccc--ccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHH
Confidence 99975 466788999998764210 0123578889999996 46789999999999999875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-23 Score=206.39 Aligned_cols=129 Identities=28% Similarity=0.398 Sum_probs=108.7
Q ss_pred eEEEeeeeEecC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEEE
Q 008771 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNY 492 (554)
Q Consensus 424 ~l~~~~l~~~y~-~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~y 492 (554)
+++++|+++.|+ +..+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 689999999996 45799999999999999999999999999999999999999999999998654 2689
Q ss_pred EecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++...+ +..||.+|+..... ... ...+..+|+.+++. +..++++..|||||||||+|
T Consensus 84 v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~~qrv~l 149 (274)
T PRK13647 84 VFQDPDDQV-FSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMW-DFRDKPPYHLSYGQKKRVAI 149 (274)
T ss_pred EecChhhhh-ccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-HHhcCChhhCCHHHHHHHHH
Confidence 999864334 46799999975421 111 24578889999995 56899999999999999875
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.2e-23 Score=208.80 Aligned_cols=128 Identities=23% Similarity=0.363 Sum_probs=110.2
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEEEe
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFE 494 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y~~ 494 (554)
.++++|+++.|++..+|+++||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++ .++|++
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 47899999999888899999999999999999999999999999999999999999999998654 368999
Q ss_pred cccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 495 QNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|++ .++++.||.|++..... ... ...+..+|..|++.. ..++++..|||||||||+|
T Consensus 82 q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~l 144 (301)
T TIGR03522 82 EHN--PLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRP-EQHKKIGQLSKGYRQRVGL 144 (301)
T ss_pred CCC--CCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-HhcCchhhCCHHHHHHHHH
Confidence 985 47788899999875321 111 346788999999964 5789999999999999874
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.8e-23 Score=201.37 Aligned_cols=126 Identities=29% Similarity=0.449 Sum_probs=104.6
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCC-----CCCceEEEECCcee-----------
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE-----KPRGGEVLLGEHNV----------- 488 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~-----~p~~G~i~~~~~~~----------- 488 (554)
|+++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|++ +|.+|+|.++|.++
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 46899999998878999999999999999999999999999999999999 99999999998653
Q ss_pred -eEEEEecccccCCCCCCCHHHHHHhhcc--c-C----CHHHHHHHHhhCCCChhhhccc--cCcCChhhhhcccC
Q 008771 489 -LPNYFEQNQAEALDLDKTVLETVAEAAE--D-W----RIDDIKGLLGRCNFKADMLDRK--VSLLSGGEKIILLY 554 (554)
Q Consensus 489 -~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~-~----~~~~~~~~L~~~~l~~~~~~~~--~~~LSGGek~Rl~l 554 (554)
.++|++|++. ++ ..||.||+..... . . ....+..++..+++.. ..+++ +..|||||||||+|
T Consensus 81 ~~i~~~~q~~~--~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgG~~qrv~l 152 (227)
T cd03260 81 RRVGMVFQKPN--PF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD-EVKDRLHALGLSGGQQQRLCL 152 (227)
T ss_pred hhEEEEecCch--hc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCCh-HHhccCCcccCCHHHHHHHHH
Confidence 2579999863 54 7899999875421 1 1 1245778899999964 45666 59999999999875
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.9e-23 Score=205.66 Aligned_cols=131 Identities=27% Similarity=0.455 Sum_probs=109.0
Q ss_pred eEEEeeeeEecC---------CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------
Q 008771 424 VVTIKNLEFGYE---------DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------ 488 (554)
Q Consensus 424 ~l~~~~l~~~y~---------~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------ 488 (554)
+|+++|+++.|+ ++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 578999999995 35699999999999999999999999999999999999999999999988643
Q ss_pred -------eEEEEecccccCCCCCCCHHHHHHhhcc---c----CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 -------LPNYFEQNQAEALDLDKTVLETVAEAAE---D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 -------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++...+++..||.+++..... . .....+.++++.+++.....++++..|||||||||+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 2689999864346677899999864311 1 1124578899999996556789999999999999875
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 554 | ||||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 7e-22 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 5e-07 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 6e-21 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 1e-05 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 7e-21 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 1e-05 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 6e-09 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-08 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 3e-08 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 3e-08 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 5e-08 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 7e-08 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-07 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 3e-07 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 3e-07 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-07 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-07 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-07 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 4e-07 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 4e-07 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 4e-07 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 5e-07 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-06 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-06 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-06 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-06 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 5e-06 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 6e-06 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-06 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 8e-06 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 8e-06 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 8e-06 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-05 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-05 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-05 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-05 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-05 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 3e-05 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 4e-05 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 4e-05 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 5e-05 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 5e-05 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 7e-05 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 8e-05 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 4e-04 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 4e-04 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-04 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-04 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 4e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 4e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 5e-04 |
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 554 | |||
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 7e-84 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-48 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-19 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-64 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 5e-32 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-48 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-28 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-42 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-27 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-40 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 5e-28 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-14 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-28 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-21 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 8e-28 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 6e-13 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 1e-27 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 4e-11 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-25 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-23 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-20 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-17 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-19 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-19 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 3e-16 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-15 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 3e-16 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 1e-09 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 4e-16 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-15 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 3e-15 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 6e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-15 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 6e-15 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 4e-11 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 8e-15 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 2e-12 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-14 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 8e-13 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-13 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 6e-13 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-13 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-12 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 4e-13 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 1e-09 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 8e-13 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 4e-12 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 8e-13 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-12 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 1e-12 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 2e-12 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-12 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 5e-10 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 3e-12 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 5e-12 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 5e-12 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 8e-12 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 5e-12 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-10 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 4e-09 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-08 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 7e-12 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 2e-10 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 9e-12 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 6e-07 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 2e-11 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 2e-06 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 4e-11 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 5e-11 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 6e-11 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 8e-09 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 1e-10 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 1e-08 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 2e-10 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 3e-04 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-10 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 3e-07 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 3e-10 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 2e-09 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 3e-10 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-07 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 6e-10 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 5e-08 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 7e-10 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 6e-07 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-09 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-08 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-09 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 7e-08 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 1e-09 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 1e-08 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-08 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-08 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-08 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 4e-07 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-08 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-06 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 6e-08 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-07 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 3e-07 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 4e-06 |
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 279 bits (716), Expect = 7e-84
Identities = 96/462 (20%), Positives = 173/462 (37%), Gaps = 97/462 (20%)
Query: 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+ S +Y +L +K+ + G+ G NG GK+T +R IA +
Sbjct: 433 GEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDG---- 488
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214
+ + ++ + + + + L+ V ++
Sbjct: 489 FPTQEECRTVYVEHDID-------------GTHSDTSV---LDFVFESGVGT-------- 524
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274
+ + E GFT + +++ S GW+M+++L + +
Sbjct: 525 ---------------------KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAV 563
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334
L++ D+LLLDEPTNHLD + WL YL + + ISHD FLD +C I+ E
Sbjct: 564 LRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKL 623
Query: 335 RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLER 394
R Y+GN++++V + + E +L
Sbjct: 624 RKYKGNFTEFVKKCP------------AAKAYE-----------------------ELSN 648
Query: 395 LQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY--EDRLLFNRANLTIERGEK 452
E + +P + +K + +++V + N+EF Y + N +
Sbjct: 649 TDLEFKFPEPGYLEGVKTK-------QKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSR 701
Query: 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD--LDKTVLET 510
A+IGPNG GKSTL+ ++ G P GEV N Y +Q+ ++ LDKT E
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELLPTSGEVYTH-ENCRIAYIKQHAFAHIESHLDKTPSEY 760
Query: 511 VAEAAEDWR-IDDIKGLLGRCNFKADMLDRKVSLLSGGEKII 551
+ + + + + N K+ + G + I
Sbjct: 761 IQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRI 802
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 5e-48
Identities = 67/359 (18%), Positives = 130/359 (36%), Gaps = 76/359 (21%)
Query: 54 VEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVT-- 111
V+K AKA S + E K + + VK+ N+ Y G +
Sbjct: 634 VKKCPAAKAY------EELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKP 687
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE-- 169
+ D+ ++ ++ ++G NGAGK+T + ++ G+ P SG V N +IA++ Q
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTH-ENCRIAYIKQHAF 746
Query: 170 --FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL----------- 216
E + +T E F+ + ++ E+ + M+ + ++
Sbjct: 747 AHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIH 806
Query: 217 --------------------------------------LDEFDLLQRKAQAVN-LDTLDA 237
+ +L++ ++ V +D +A
Sbjct: 807 SRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEA 866
Query: 238 KVSKLMPE------------LGFTADDG-DRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
S LG + + S G ++++ L Q P L++LD
Sbjct: 867 LASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLD 926
Query: 285 EPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343
EPTN+LD D++ L L + + ++II+H F L ++ + G N+
Sbjct: 927 EPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHNWVS 985
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 92.4 bits (229), Expect = 1e-19
Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 7/166 (4%)
Query: 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRA 443
+K + +E ++ + F + G + Y ++L N+
Sbjct: 396 MTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDL-CNCEFSLAYGAKILLNKT 454
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
L ++R + I GPNGCGKSTL++ I + G E + Y E +
Sbjct: 455 QLRLKRARRYGICGPNGCGKSTLMRAIANGQV--DGFPTQEECRTV--YVEH-DIDGTHS 509
Query: 504 DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
D +VL+ V E+ + + IK L F +M+ +S LSGG K
Sbjct: 510 DTSVLDFVFESGVGTK-EAIKDKLIEFGFTDEMIAMPISALSGGWK 554
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 219 bits (561), Expect = 3e-64
Identities = 102/464 (21%), Positives = 174/464 (37%), Gaps = 96/464 (20%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
E+ Y + VK G VG+VG NG GKTT ++I+AGQ P+ + N
Sbjct: 95 EDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDN 154
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEM------EIAGKLERVQKALESAVDDMDLMG 214
+ AF E + R E K + + GK+ + K +D +G
Sbjct: 155 VIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK-------VDEVG 207
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM-RMSLGKI 273
+ + L+ + + LD ++ +L SG ++ R+++
Sbjct: 208 KFEEVVKELELE------NVLDRELHQL-------------------SGGELQRVAIAAA 242
Query: 274 LLQDPDLLLLDEPTNHLDLDT---IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330
LL+ DEP+++LD+ + + L + ++++ HD A LD L I
Sbjct: 243 LLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIH--- 299
Query: 331 MGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEK 390
V G Y + K T++ IN G
Sbjct: 300 --VVYGEPGVYGIFSKPKG-------------------TRNGINEFLQG----------- 327
Query: 391 KLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERG 450
L++E +P++ + K+ ++V L Y L I +G
Sbjct: 328 ---YLKDENVRFRPYEIRFTKLS-ERVDVERETLVEYPRLVKDYGSFKL-EVEPGEIRKG 382
Query: 451 EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLET 510
E I+GPNG GK+T +K++ G+E+P G+V + Q + + TV E
Sbjct: 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAY-----KPQYIKAEYEGTVYEL 437
Query: 511 VAEAAED-----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+++ + ++ LG D+ DR V LSGGE
Sbjct: 438 LSKIDSSKLNSNFYKTELLKPLGI----IDLYDRNVEDLSGGEL 477
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 5e-32
Identities = 55/256 (21%), Positives = 97/256 (37%), Gaps = 57/256 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
V+ + K Y G L+ E++KGE +G+VG NG GKTT ++++AG EEP G V
Sbjct: 358 VEYPRLVKDY-GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW- 415
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
++ +A+ Q + TV E ++ + K L +
Sbjct: 416 --DLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLG------------I 461
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
+ DR V S G R+++ LL+D
Sbjct: 462 IDLY--------------------------------DRNVEDLSGGELQRVAIAATLLRD 489
Query: 278 PDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV-----E 328
D+ LLDEP+ +LD++ + + K + +++ HD +D + +++
Sbjct: 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEP 549
Query: 329 TEMGVSRTYEGNYSQY 344
G + G
Sbjct: 550 GRHGRALPPMGMREGM 565
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 3e-48
Identities = 84/458 (18%), Positives = 163/458 (35%), Gaps = 78/458 (17%)
Query: 101 ENISKSYKGVTVLKDVTWEV-KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+ Y V K K +G++G NG GKTT L+I+AG+ P+ G+
Sbjct: 3 GEVIHRY-KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG 61
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
++ + E+ +E S + + +E K L+ V +L +
Sbjct: 62 KDEVLKRFRGKEIYN---YFKELYSNELKIVHKIQYVEYASKFLKGTV------NEILTK 112
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279
D +K + L + L ++ S G R+ + LL++ D
Sbjct: 113 IDERGKKDEVKELLNMT----NLW----------NKDANILSGGGLQRLLVAASLLREAD 158
Query: 280 LLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY 337
+ + D+P+++LD+ + + ++ ++++ HD LD L I S
Sbjct: 159 VYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESS--V 216
Query: 338 EGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQE 397
G S+ + + + K + R + L+ + +
Sbjct: 217 YGRVSKSYAARVG--INNF------------LKGYLPAENMKI---RPDEIKFMLKEVSD 259
Query: 398 EEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIG 457
+ + + + + D L N + GE I+G
Sbjct: 260 LDLSKDLKTKMK-----------------WTKIIKKLGDFQLVVD-NGEAKEGEIIGILG 301
Query: 458 PNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED 517
PNG GK+T ++++G G V + + +Y Q + D TV + + A++D
Sbjct: 302 PNGIGKTTFARILVGEITADEGSVTPEKQIL--SYKPQR--IFPNYDGTVQQYLENASKD 357
Query: 518 ------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
W +++ L +L+ V+ LSGGE
Sbjct: 358 ALSTSSWFFEEVTKRLNL----HRLLESNVNDLSGGEL 391
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-28
Identities = 47/233 (20%), Positives = 89/233 (38%), Gaps = 50/233 (21%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
K I K L E K+GE +G++G NG GKTT RI+ G+ D G+V K
Sbjct: 271 KWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK 329
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+++ Q + TV++ +A K+ + +
Sbjct: 330 --QILSYKPQRIFPNYDGTVQQYLENASKDALS----------------TSSWFFEEVTK 371
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
+L +L+ + V S G ++ + L ++
Sbjct: 372 RLNL-----------------HRLL----------ESNVNDLSGGELQKLYIAATLAKEA 404
Query: 279 DLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
DL +LD+P+++LD++ + ++ ++ II HD + D + +I+
Sbjct: 405 DLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRII 457
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 3e-42
Identities = 93/475 (19%), Positives = 167/475 (35%), Gaps = 95/475 (20%)
Query: 90 GASSISSGVKLE-NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148
G S +LE + Y + VK+G VG+VG NG GK+T ++I+AGQ
Sbjct: 13 GLVPRSHMEQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLI 72
Query: 149 PDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA-FKEEM-----EIAGKLERVQKA 202
P+ + + AF E + + ++ + K + + +
Sbjct: 73 PNLCGDNDSWDGVIRAFRGNELQ-NYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVI--EL 129
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
L+ D+ + ++ +L +R + S
Sbjct: 130 LK-KADETGKLEEVVKALELENVL---------------------------EREIQHLSG 161
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE---WLEGYLGKQDVPMVIISHDRAFL 319
G R+++ LL++ DEP+++LD+ L ++ ++++ HD A L
Sbjct: 162 GELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVL 221
Query: 320 DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAG 379
D L I G Y + K T++ IN
Sbjct: 222 DYLSDIIHVVYGE-----PGVYGIFSQPKG-------------------TRNGINEF--- 254
Query: 380 ANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLL 439
L ++E + + ++VT L Y L
Sbjct: 255 ------------LRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRL 302
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE 499
I++GE I+GPNG GK+T +K++ G+E+P G++ + Q
Sbjct: 303 -EVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAY-----KPQYI 356
Query: 500 ALDLDKTVLETVAEAAED-----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
D + TV E +++ + ++ LG D+ DR+V+ LSGGE
Sbjct: 357 KADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI----IDLYDREVNELSGGEL 407
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-27
Identities = 53/234 (22%), Positives = 93/234 (39%), Gaps = 52/234 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
V + K Y G L+ E+KKGE +G+VG NG GKTT ++++AG EEP G +
Sbjct: 288 VTYPRLVKDY-GSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW- 345
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
++ +A+ Q + TV E ++ + K L +
Sbjct: 346 --DLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLG------------I 391
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
+ DR V S G R+++ LL+D
Sbjct: 392 IDLY--------------------------------DREVNELSGGELQRVAIAATLLRD 419
Query: 278 PDLLLLDEPTNHLDLD----TIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
D+ LLDEP+ +LD++ + + K + +++ HD +D + +++
Sbjct: 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLM 473
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 1e-40
Identities = 80/470 (17%), Positives = 157/470 (33%), Gaps = 98/470 (20%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
+++ Y + + G+ +GLVG NG GK+T L+I+AG+++P+ G
Sbjct: 81 AHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEW 140
Query: 161 MKIA--FLSQEFEVSMSRTVREEFMSAFKEEM----------EIAGKLERVQKALESAVD 208
+I F E + ++ + ++ + K + + E ++ +E + +
Sbjct: 141 QEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPE 200
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
D+ R + L ++ R + S G R
Sbjct: 201 DVK---RYIKILQL-----------------ENVL----------KRDIEKLSGGELQRF 230
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTK 325
++G +Q+ D+ + DEP+++LD+ L ++ + HD + LD L
Sbjct: 231 AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDF 290
Query: 326 IVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQ-TKDLINRLGAGANSGR 384
+ ++ + + I I R
Sbjct: 291 VC-----------------IIYGVPSVYGVVTLPASVREGINIFLDGHIPAENLRF---R 330
Query: 385 ASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRAN 444
+ + ++ E+ Q + + +G +V
Sbjct: 331 TEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVE------------------E 372
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504
E ++G NG GK+TL+KL+ G KP G+ + N + Q A
Sbjct: 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKL-----NVSMKPQKIAPKFP 427
Query: 505 KTVLETVAEAAED-----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
TV + + D+ L D++D++V LSGGE
Sbjct: 428 GTVRQLFFKKIRGQFLNPQFQTDVVKPLRI----DDIIDQEVQHLSGGEL 473
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 5e-28
Identities = 46/227 (20%), Positives = 80/227 (35%), Gaps = 51/227 (22%)
Query: 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIA 164
K +G VL E E + ++G NG GKTT ++++AG +PD G I + ++
Sbjct: 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIP---KLNVS 416
Query: 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224
Q+ TVR+ F + + V K L +D+
Sbjct: 417 MKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLR------------IDDI---- 460
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
D+ V S G R+++ L D+ L+D
Sbjct: 461 ----------------------------IDQEVQHLSGGELQRVAIVLALGIPADIYLID 492
Query: 285 EPTNHLDLD----TIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
EP+ +LD + + + ++ I+ HD L K++
Sbjct: 493 EPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVI 539
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 7e-14
Identities = 30/154 (19%), Positives = 48/154 (31%), Gaps = 29/154 (18%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ Y T G+ ++G NG GKST LK++ G +KP G
Sbjct: 76 PTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFD 135
Query: 483 LGEHNVL---------------------------PNYFEQNQAEALDLDKTVLETVAEAA 515
P Y + + V E +
Sbjct: 136 DPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM 195
Query: 516 EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
E +D+K + + ++L R + LSGGE
Sbjct: 196 EK-SPEDVKRYIKILQLE-NVLKRDIEKLSGGEL 227
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 3e-28
Identities = 53/249 (21%), Positives = 94/249 (37%), Gaps = 55/249 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
++L+ I + +G T+LK ++W++ KG+K L G+NGAGKTT L I+ E SG V
Sbjct: 22 IQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81
Query: 156 -----KAKSNM-----KIAFLSQEFEVSMSR--TVREEFMSAFKEEMEIAGKLERVQKAL 203
K + I F+S V + +S + G + +
Sbjct: 82 GKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGA---FKSIGVYQDIDDE- 137
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
+ +LL + + + + S+G
Sbjct: 138 -----IRNEAHQLLKLVGMSAKA---------------------------QQYIGYLSTG 165
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-----QDVPMVIISHDRAF 318
+ R+ + + L+ P +L+LDEP LD E L L + M+ ++H
Sbjct: 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEE 225
Query: 319 LDQLCTKIV 327
+ +KI+
Sbjct: 226 ITANFSKIL 234
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 3e-21
Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 23/148 (15%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-L 482
++ + + + + + + + I +G+K + G NG GK+TLL ++ E G V L
Sbjct: 21 LIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80
Query: 483 LGE--HNVLPNYFE---------QNQAEALDLDKTVLETVAEAAED----WRI---DDI- 523
G+ V + + E + V++ V A ++ +
Sbjct: 81 FGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRN 140
Query: 524 --KGLLGRCNFKADMLDRKVSLLSGGEK 549
LL + + + LS GEK
Sbjct: 141 EAHQLLKLVGM-SAKAQQYIGYLSTGEK 167
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 8e-28
Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 56/230 (24%)
Query: 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-- 152
S +++ ++S Y VL+ +T ++KG V G NG GKTT L+ I+ +P G
Sbjct: 8 GSKLEIRDLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 153 -----NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ K K KI FL +E V +S ++ ++ L V K ++ +
Sbjct: 67 IYNGVPITKVKG--KIFFLPEEIIV-------PRKISV-EDYLKAVASLYGV-KVNKNEI 115
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
D L+ ++L K + + S G R
Sbjct: 116 MD------ALESVEVLDLK----------------------------KKLGELSQGTIRR 141
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISH 314
+ L LL + ++ +LD+P +D D+ + + K+ ++I S
Sbjct: 142 VQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 191
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 6e-13
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 22/140 (15%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S + I++L GY+ +L R +TIE+G GPNG GK+TLLK I KP GE++
Sbjct: 9 SKLEIRDLSVGYDKPVL-ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 483 LGEHNV---------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD----IKGLLGR 529
+ LP + + +V + + A + + I L
Sbjct: 68 YNGVPITKVKGKIFFLP------EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121
Query: 530 CNFKADMLDRKVSLLSGGEK 549
L +K+ LS G
Sbjct: 122 VEVLD--LKKKLGELSQGTI 139
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 1e-27
Identities = 50/249 (20%), Positives = 100/249 (40%), Gaps = 66/249 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
V ++++ K +LK +++E+++GE GL+G NGAGKTT LRII+ +P SG V
Sbjct: 16 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 75
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKA-LES 205
+ + I++L +E + E + + +E
Sbjct: 76 GKNVVEEPHEVRK--LISYLPEEAGAYRNMQGI--------EYLRFVAGFYASSSSEIEE 125
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
V+ + L ++ V+++S G
Sbjct: 126 MVER------ATEIAGLGEKI---------------------------KDRVSTYSKGMV 152
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAF 318
++ + + L+ +P L +LDEPT+ LD ++ ++ + +++ SH+
Sbjct: 153 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILK----QASQEGLTILVSSHNMLE 208
Query: 319 LDQLCTKIV 327
++ LC +I
Sbjct: 209 VEFLCDRIA 217
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 4e-11
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 14/138 (10%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V +K+L + + + IE GE +IGPNG GK+T L++I L KP G V
Sbjct: 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 73
Query: 483 LGEHNVLPNYFE--QN-----QAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGR 529
+ NV+ E + + + +E + A + ++
Sbjct: 74 VFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEI 133
Query: 530 CNFKADMLDRKVSLLSGG 547
+ + +VS S G
Sbjct: 134 AGLG-EKIKDRVSTYSKG 150
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 1e-25
Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 48/228 (21%)
Query: 95 SSGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ + +EN+ Y+ + + + +++ KG+ + ++G NG GK+T L ++ G P G
Sbjct: 2 NKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ + I F+ Q F + +V D+ LM
Sbjct: 62 IEVYQ---SIGFVPQFFSSPFAYSVL-----------------------------DIVLM 89
Query: 214 GRL--LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
GR ++ F + D + + L R S S G + + +
Sbjct: 90 GRSTHINTFAKPKSH------D--YQVAMQALDYLN-LTHLAKREFTSLSGGQRQLILIA 140
Query: 272 KILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
+ + + L+LLDEPT+ LDL + L Q++ +V +H
Sbjct: 141 RAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 1e-23
Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 25/142 (17%)
Query: 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++++NL F Y+ + LF + N + +G+ A++G NGCGKSTLL L++G+ +P G++
Sbjct: 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 482 -LLGEHNVLPNYFEQNQAEALDLDKTVLETVA------------EAAEDWRI-DDIKGLL 527
+ +P Q + +VL+ V + D+++ L
Sbjct: 63 EVYQSIGFVP------QFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYL 116
Query: 528 GRCNFKADMLDRKVSLLSGGEK 549
+ R+ + LSGG++
Sbjct: 117 NLTHLA----KREFTSLSGGQR 134
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 2e-20
Identities = 47/242 (19%), Positives = 93/242 (38%), Gaps = 59/242 (24%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+N+ + G L+++ EV GEKV ++G NG+GKTT LR I+G P SGN
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL-LPYSGN 59
Query: 154 VIKAKSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ ++ L + +E+ + TV + EE++ + + + L+
Sbjct: 60 IFINGMEVRKIRNYIRYSTNLPEAYEIGV--TVNDIV--YLYEELKGLDR-DLFLEMLK- 113
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
+L +E R + S+G
Sbjct: 114 -------ALKLGEEI--------------------------------LRRKLYKLSAGQS 134
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTK 325
+ + L P+++ LDEP ++D + Y+ + ++++H+ L+
Sbjct: 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEY 194
Query: 326 IV 327
Sbjct: 195 KA 196
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 2e-17
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 16/138 (11%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +KN+ + + NL + GEK I+GPNG GK+TLL+ I GL P G
Sbjct: 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSG 58
Query: 480 EVLLGEHNV--LPNY----FEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCN 531
+ + V + NY +A + + TV + V E D +L
Sbjct: 59 NIFINGMEVRKIRNYIRYSTNLPEAYEIGV--TVNDIVYLYEELKGLDRDLFLEMLKALK 116
Query: 532 FKADMLDRKVSLLSGGEK 549
++L RK+ LS G+
Sbjct: 117 LGEEILRRKLYKLSAGQS 134
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 2e-19
Identities = 54/230 (23%), Positives = 80/230 (34%), Gaps = 72/230 (31%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---KAKSNM---- 161
T L ++ EV+ GE + LVG NGAGK+T L +AG G++ +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATK 70
Query: 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL-- 216
A+LSQ+ + V + + +
Sbjct: 71 LALHRAYLSQQQTPPFATPVWH-------------------------YL----TLHQHDK 101
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+LL A A+ LD R S G R+ L ++LQ
Sbjct: 102 TRT-ELLNDVAGALALDDK-----------------LGRSTNQLSGGEWQRVRLAAVVLQ 143
Query: 277 D-------PDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHD 315
LLLLDEP N LD+ + L L +Q + +V+ SHD
Sbjct: 144 ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA-LSQQGLAIVMSSHD 192
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 3e-19
Identities = 26/131 (19%), Positives = 40/131 (30%), Gaps = 27/131 (20%)
Query: 436 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-------- 487
+ + + GE ++GPNG GKSTLL + G+ G +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATK 70
Query: 488 ------VLPNYFEQNQAEALDLDKTVLETVA---EAAEDWRIDDIKGLLGRCNFKADMLD 538
L Q + V + + + + G D L
Sbjct: 71 LALHRAYLS------QQQTPPFATPVWHYLTLHQHDKTRTEL--LNDVAGALAL-DDKLG 121
Query: 539 RKVSLLSGGEK 549
R + LSGGE
Sbjct: 122 RSTNQLSGGEW 132
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 3e-16
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 424 VVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++ ++ L + Y D L N+ I+RGE TAI+G NG GKSTL + G+ KP G +
Sbjct: 7 ILKVEELNYNYSDGTHALKG-INMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 482 LLGEHNV 488
L +
Sbjct: 66 LFDNKPI 72
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 1e-15
Identities = 51/259 (19%), Positives = 99/259 (38%), Gaps = 80/259 (30%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+K+E ++ +Y G LK + +K+GE ++G NG GK+T + G +P SG ++
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67
Query: 156 ----KAKSNMKIAFLSQEFEVSM----------SRTVREEFMSAF--------KEEMEIA 193
S I L + + + S +V ++ +F ++E+
Sbjct: 68 DNKPIDYSRKGIMKLRE--SIGIVFQDPDNQLFSASVYQDV--SFGAVNMKLPEDEIR-- 121
Query: 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253
+RV AL+ ++ L
Sbjct: 122 ---KRVDNALK------------------------RTGIEHL-----------------K 137
Query: 254 DRLVASFSSGWQM-RMSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVP 308
D+ S G Q R+++ +L+ +P +L+LDEPT LD + ++ L + +
Sbjct: 138 DKPTHCLSFG-QKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGIT 196
Query: 309 MVIISHDRAFLDQLCTKIV 327
++I +HD + C +
Sbjct: 197 IIIATHDIDIVPLYCDNVF 215
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 77.5 bits (192), Expect = 3e-16
Identities = 45/253 (17%), Positives = 86/253 (33%), Gaps = 61/253 (24%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
+ ENI K + L V+ V KG+ ++G NG+GK+T + +I G + D G V
Sbjct: 9 RTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFEN 68
Query: 155 --IKAKSNMKIAFL--------SQEFEVSMSRTVREEFMSAFKEEME--IAGKLERVQKA 202
I K ++ Q + M TV E + E + +
Sbjct: 69 KDITNKEPAELYHYGIVRTFQTPQPLK-EM--TVLENLLIGEICPGESPLNSLFYKKWIP 125
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
E + + ++L+ L DR S
Sbjct: 126 KEEEMVEKAF--KILEFLKLSHLY---------------------------DRKAGELSG 156
Query: 263 GWQMRMSLGKILLQDPDLLLLDEP--------TNHLDLDTIEWLEGYLGKQDVPMVIISH 314
G + +G+ L+ +P ++++DEP + + + + L+ + + +II H
Sbjct: 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI-FNHVLELK----AKGITFLIIEH 211
Query: 315 DRAFLDQLCTKIV 327
+ +
Sbjct: 212 RLDIVLNYIDHLY 224
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 1e-09
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
+ ++++ +G+ T IIGPNG GKSTL+ +I G K G V ++
Sbjct: 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 71
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 4e-16
Identities = 55/260 (21%), Positives = 100/260 (38%), Gaps = 83/260 (31%)
Query: 98 VKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+++ N+S + T L++V+ + +GE + + G G+GK+T L+I+AG EP SG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 153 NVIKAKSNMKIAFLSQEFEVSM----------SRTVREEFMSAF-------KEEMEIAGK 195
+V+ K + + + + + V +E AF +
Sbjct: 63 DVLYDGERKKGYEIRR--NIGIAFQYPEDQFFAERVFDEV--AFAVKNFYPDRDPV---- 114
Query: 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255
V+KA+E V LD K DR
Sbjct: 115 -PLVKKAME------------------------FVGLDFDSFK---------------DR 134
Query: 256 LVASFSSGWQM-RMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDV 307
+ S G + R+++ +++ +PD+L+LDEP LD L +E
Sbjct: 135 VPFFLSGG-EKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVE----KWKTLGK 189
Query: 308 PMVIISHDRAFLDQLCTKIV 327
+++ISHD + ++V
Sbjct: 190 TVILISHDIETVINHVDRVV 209
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 2e-15
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 425 VTIKNLEFGYEDRLLFNRA-----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+ + N+ + + +L I GE + G G GKSTLL+++ GL +P G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 480 EVLLG 484
+VL
Sbjct: 63 DVLYD 67
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 3e-15
Identities = 50/216 (23%), Positives = 84/216 (38%), Gaps = 61/216 (28%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+KL NI+K + + L +V+ V G+ G++G +GAGK+T +R + E P G+
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 154 VIKAKSNM-------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLER 198
V+ + +I + Q F + SRTV +E+ K E
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP----LELDNTPKDEV 140
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
++ E LL L + D+ S L
Sbjct: 141 KRRVTE-----------LLSLVGLGDKH---------DSYPSNL---------------- 164
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
S G + R+++ + L +P +LL D+ T+ LD T
Sbjct: 165 --SGGQKQRVAIARALASNPKVLLCDQATSALDPAT 198
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 6e-09
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 418 GRSGRSVVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473
+ ++ + N+ + +A +L + G+ +IG +G GKSTL++ + L
Sbjct: 18 DDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 77
Query: 474 EKPRGGEVLLGEHNV 488
E+P G VL+ +
Sbjct: 78 ERPTEGSVLVDGQEL 92
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.0 bits (191), Expect = 3e-15
Identities = 89/655 (13%), Positives = 189/655 (28%), Gaps = 185/655 (28%)
Query: 1 MDVTTTTTNLR-SSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSI 59
MD T + S + F K + + ++ E I
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP------KSILS------KEEIDHI 54
Query: 60 AKAQSDVES---LF-------SSSADEF----ENKKYS----------NKQSNTGASSIS 95
++ V LF +F Y + S I
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 96 SGVKLENISKSY--------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147
+L N ++ + + L+ E++ + V + GV G+GKT + +
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLS 173
Query: 148 EP------------DSGNVIKAKSNMKI--AFLSQEFEVSMSRTVREEFMSAFKEEME-I 192
+ N ++ +++ L Q + + T R + S K + I
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ---IDPNWTSRSDHSSNIKLRIHSI 230
Query: 193 AGKLER--VQKALESA---VDDM-DLMGRLLDEFD------LLQRKAQAVNLDTLDAKVS 240
+L R K E+ + ++ + + + F+ L R Q D L A +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQN--AKAWNAFNLSCKILLTTRFKQVT--DFLSAATT 286
Query: 241 KLMP----ELGFTADDGDRLVASFSSGWQMRMSLGK----ILLQDPDLL-----LLDEPT 287
+ + T D+ L+ + + +L +P L + +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKY-----LDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 288 NHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY-VL 346
D W ++ + +I + L+ L E R + + V
Sbjct: 342 ATWD----NWK--HVNCDKLTTII----ESSLNVL----EPAEY---RKM---FDRLSVF 381
Query: 347 EKAAWIESQYAA--WEKQQREIEQTKDLINRLGAGANSGRASSAEKKLER-------LQE 397
+A I + + W + ++N+L + S EK+ + +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVM--VVVNKL------HKYSLVEKQPKESTISIPSIYL 433
Query: 398 EEQIEKPFQRKQMKIRFPERGRSGRSVVT---IKNLEFGY---------------EDRLL 439
E +++ + + ++ + I Y E L
Sbjct: 434 ELKVKLE-NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 440 FNRANLT---IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN 496
F L +E+ K ++L + L+ + Y N
Sbjct: 493 FRMVFLDFRFLEQ--KIRHDSTAWNASGSILNTLQQLKFYK-------------PYICDN 537
Query: 497 QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKII 551
+ L +L+ + + E+ L + D+L +++L++ E I
Sbjct: 538 DPKYERLVNAILDFLPKIEEN---------LICSKY-TDLL--RIALMAEDEAIF 580
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 6e-15
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 85 KQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRII 143
+ + S ++ + K Y G ++ V++++++GE VGL+G +G+GKTT LR+I
Sbjct: 2 RGHHHHHHHGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLI 61
Query: 144 AGQEEPDSGNVI 155
AG E P G+V
Sbjct: 62 AGLERPTKGDVW 73
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 4e-11
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 410 MKIRFPERGRSGRSVVTIKNLEFGYEDRLL-FNRANLTIERGEKTAIIGPNGCGKSTLLK 468
M+ ++ +E Y + I GE ++GP+G GK+T+L+
Sbjct: 1 MRGHHHHHHHGSMTI-EFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILR 59
Query: 469 LIMGLEKPRGGEVLLGEHNV 488
LI GLE+P G+V +G V
Sbjct: 60 LIAGLERPTKGDVWIGGKRV 79
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 8e-15
Identities = 23/60 (38%), Positives = 41/60 (68%)
Query: 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ + + ++SKS++ VL D++ + GE + ++G +G GKTT LR +AG E+PDSG +
Sbjct: 2 TAALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 22/66 (33%), Positives = 40/66 (60%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ + I +L +++ + N +L+++ GE IIG +GCGK+TLL+ + G E+P GE+
Sbjct: 3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS 62
Query: 483 LGEHNV 488
L +
Sbjct: 63 LSGKTI 68
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 71/219 (32%)
Query: 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ ++N+SK +K V L +V ++ GE+ G++G +GAGKTT +RIIAG + P +G
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 154 VI---KAKSNMKIAFLS-QEFEVSM---------SRTVREEFMSAF--------KEEMEI 192
+ + ++ + ++ ++ M + T E + AF KEE+
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFEN-I-AFPLTNMKMSKEEIR- 118
Query: 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
+RV++ + +LD +L + +
Sbjct: 119 ----KRVEEVAK-----------ILDIHHVLNHFPREL---------------------- 141
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S Q R++L + L++DP LLLLDEP ++LD
Sbjct: 142 --------SGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 8e-13
Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 44/154 (28%)
Query: 425 VTIKNLE--FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +KN+ F + + N+ IE GE+ I+GP+G GK+T +++I GL+ P GE+
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 483 LGEHNV-------LP-----------NY-------FEQNQAEALDLDKT----VLETVAE 513
+ V +P + +N A L K + + V E
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 514 AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
A+ I +L+ LSG
Sbjct: 124 VAKILDIH-------------HVLNHFPRELSGA 144
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+++E++S+ + L +++ +V+ GE ++G GAGKT L +IAG PDSG ++
Sbjct: 2 IEIESLSRKW-KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 6e-13
Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 35/147 (23%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ I++L +++ L + +L +E GE I+GP G GK+ L+LI G P G +LL
Sbjct: 1 MIEIESLSRKWKNFSL-DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59
Query: 484 GEHNV--LP-----------NY--F-----EQNQAEALDLDKT-VLETVAEAAEDWRIDD 522
+V L NY F ++N + + K + V + A D +I+
Sbjct: 60 DGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE- 118
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEK 549
+LDR LSGGE+
Sbjct: 119 ------------HLLDRNPLTLSGGEQ 133
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 37/147 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++N+ + + N NL I+ GE A++GP+G GKSTLL I G+ KP G++
Sbjct: 4 IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFD 63
Query: 485 EHNV--LP-----------NY-------FEQNQAEALDLDKT----VLETVAEAAEDWRI 520
E +V LP N+ +N A L+L K + + V E A+ I
Sbjct: 64 EKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHI 123
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGG 547
D +L+R LSGG
Sbjct: 124 D-------------KLLNRYPWQLSGG 137
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 54/207 (26%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG--- 152
+KLENI K + T L ++ ++K GE + L+G +G+GK+T L IAG +P SG
Sbjct: 2 VEIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61
Query: 153 ------NVIKAKSNMKIAFLSQEFEV--SMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
+ K + + + Q + + M TV + + AF E+ A + E +K E
Sbjct: 62 FDEKDVTELPPK-DRNVGLVFQNWALYPHM--TVYKN-I-AFPLELRKAPREEIDKKVRE 116
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
A ++L LL R + S G
Sbjct: 117 VA--------KMLHIDKLLNRYPWQL------------------------------SGGQ 138
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLD 291
Q R+++ + L+++P++LLLDEP ++LD
Sbjct: 139 QQRVAIARALVKEPEVLLLDEPLSNLD 165
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 4e-13
Identities = 60/273 (21%), Positives = 105/273 (38%), Gaps = 82/273 (30%)
Query: 89 TGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148
S + + + + KS+ + VLK + +++GE V ++G +G+GK+T LR + E+
Sbjct: 16 PRGSHMLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75
Query: 149 PDSGNVI--------------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194
D G +I K + + + F Q F + TV A M++
Sbjct: 76 FDEGEIIIDGINLKAKDTNLNKVREEVGMVF--QRFNLFPHMTVLNNITLA---PMKVRK 130
Query: 195 --KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
+ + KA+E LL + V L D
Sbjct: 131 WPREKAEAKAME-----------------LLDK----VGL-----------------KDK 152
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQ 305
S S G R+++ + L +P ++L DEPT+ LD L ++ L +
Sbjct: 153 AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK----QLANE 208
Query: 306 DVPMVIISH---------DR-AFLDQLCTKIVE 328
+ MV+++H DR F+D I+E
Sbjct: 209 GMTMVVVTHEMGFAREVGDRVLFMDG--GYIIE 239
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 1e-09
Identities = 21/83 (25%), Positives = 36/83 (43%)
Query: 406 QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKST 465
RG ++ + L+ + + N+ I GE +IGP+G GKST
Sbjct: 6 HHHHHSSGLVPRGSHMLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKST 65
Query: 466 LLKLIMGLEKPRGGEVLLGEHNV 488
L+ + LE GE+++ N+
Sbjct: 66 FLRCLNLLEDFDEGEIIIDGINL 88
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 8e-13
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 37/147 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++NL + + N+ NLTI+ GE ++GP+GCGK+T L++I GLE+P G + G
Sbjct: 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFG 71
Query: 485 EHNV--LP-----------NY-------FEQNQAEALDLDKT----VLETVAEAAEDWRI 520
+ +V LP +Y +N A L + K + + V AAE
Sbjct: 72 DRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE---- 127
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGG 547
+ + ++L+R + LSGG
Sbjct: 128 --LLQI-------EELLNRYPAQLSGG 145
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 4e-12
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
VKLEN++K + T + + +K GE + L+G +G GKTT LR+IAG EEP G +
Sbjct: 10 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 8e-13
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+++++ Y + +K + +V +G+ V L+G NGAGKTT L IAG G +
Sbjct: 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 66.3 bits (163), Expect = 2e-12
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+++L Y +L + RG+ +IG NG GK+T L I GL + + G+++
Sbjct: 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67
Query: 486 HNV 488
++
Sbjct: 68 QDI 70
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 1e-12
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 37/147 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + NL+ + + + ++ GE A++GP+GCGK+T L ++ G+ KP GE+
Sbjct: 4 IRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD 63
Query: 485 EHNV--LP-----------NY-------FEQNQAEALDLDKT----VLETVAEAAEDWRI 520
+ V +P NY +N A L + V + V E A
Sbjct: 64 DVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIAR---- 119
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGG 547
+ ++LDRK + LSGG
Sbjct: 120 --KLLI-------DNLLDRKPTQLSGG 137
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+++ N+ K + V + V++EVK GE V L+G +G GKTT L ++AG +P SG +
Sbjct: 2 PSIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI 60
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 1e-12
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 61/238 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG----- 152
++ ENI K +G +LK ++ VKKGE V ++G +G+GK+T L I+ + P G
Sbjct: 5 LRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLE 64
Query: 153 --NVIKAKS-------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLERVQK 201
V N K+ F+ Q + T E + M G K E ++
Sbjct: 65 GKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVP----MLKMGKPKKEAKER 120
Query: 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261
LL E L + L K +L S
Sbjct: 121 GEY-----------LLSELGLGDK---------LSRKPYEL------------------S 142
Query: 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT---IEWLEGYLGKQDVPMVIISHDR 316
G Q R+++ + L +P LL DEPT +LD + + + + +V+++H+R
Sbjct: 143 GGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 5e-10
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ +N++ + +L++++GE +IIG +G GKSTLL ++ L+ P G+V
Sbjct: 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62
Query: 483 LGEHNV 488
L V
Sbjct: 63 LEGKEV 68
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 43/153 (28%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V + ++ + + +L ++ GE ++GP+GCGK+T L++I GLE+P G++ +G
Sbjct: 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIG 63
Query: 485 EHNV--------LP-----------NY-------FEQNQAEALDLDKT----VLETVAEA 514
+ V +P +Y N A L L K + + V E
Sbjct: 64 DKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREV 123
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
AE + GL ++L+RK LSGG
Sbjct: 124 AE------LLGL-------TELLNRKPRELSGG 143
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 5e-12
Identities = 27/59 (45%), Positives = 42/59 (71%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+GV+L ++ K + VT +++++ EVK GE + L+G +G GKTT LR+IAG EEP G +
Sbjct: 2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 5e-12
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+ V+L+N++K++ V V KD+ ++ +GE V VG +G GK+T LR+IAG E SG++
Sbjct: 2 ASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 8e-12
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 37/147 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++N+ + + ++ NL I GE +GP+GCGKSTLL++I GLE G++ +G
Sbjct: 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63
Query: 485 EHNV--LP-----------NY-------FEQNQAEALDLDKT----VLETVAEAAEDWRI 520
E + P +Y +N + L L + + V + AE
Sbjct: 64 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE---- 119
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGG 547
+ L A +LDRK LSGG
Sbjct: 120 --VLQL-------AHLLDRKPKALSGG 137
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 5e-12
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 425 VTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ KN+ F Y ++ + NL ++ G+ A++G +GCGKST ++L+ L P G V
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 482 LLGEHNV 488
+ ++
Sbjct: 448 SIDGQDI 454
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 425 VTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
V + F Y + +L +++G+ A++G +GCGKST+++L+ P G V
Sbjct: 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090
Query: 482 LLGEHNV 488
L +
Sbjct: 1091 FLDGKEI 1097
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 4e-09
Identities = 54/265 (20%), Positives = 98/265 (36%), Gaps = 85/265 (32%)
Query: 58 SIAKAQSDVESLFS-----SSADEFENKKYSNKQSNTGASSISSGVKLENISKSY---KG 109
AKA + D + + + + V+ + +Y
Sbjct: 993 DYAKATVSASHIIRIIEKTPEIDSYSTQGLKP-------NMLEGNVQFSGVVFNYPTRPS 1045
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE---EPDSGNV------IKAKSN 160
+ VL+ ++ EVKKG+ + LVG +G GK+T ++ E +P +G+V IK + N
Sbjct: 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKST---VVQLLERFYDPMAGSVFLDGKEIK-QLN 1101
Query: 161 MK-----IAFLSQE---FEVSMSRTVRE------EFMSAFKEEMEIAGKLERVQKALESA 206
++ + +SQE F ++ E EE+ A
Sbjct: 1102 VQWLRAQLGIVSQEPILF----DCSIAENIAYGDNSRVVSYEEIVRA------------- 1144
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
A+ N+ + L P+ + GD+ S G +
Sbjct: 1145 --------------------AKEANIHQF---IDSL-PD-KYNTRVGDKGT-QLSGGQKQ 1178
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R+++ + L++ P +LLLDE T+ LD
Sbjct: 1179 RIAIARALVRQPHILLLDEATSALD 1203
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 75/259 (28%)
Query: 58 SIAKAQSDVESLFSSSADEFENKKYSNKQSNTGA--SSISSGVKLENISKSY---KGVTV 112
+ A A+ +F +NK + S +G +I ++ +NI SY K V +
Sbjct: 350 AFANARGAAYEVFKI----IDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQI 405
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV------IKAKSNMK---- 162
LK + +VK G+ V LVG +G GK+T ++++ +P G V I+ N++
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIR-TINVRYLRE 464
Query: 163 -IAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GK----LERVQKALESAVDDMDLM 213
I +SQE F + T+ E I G+ ++ ++KA++ A
Sbjct: 465 IIGVVSQEPVLF----ATTIAE----------NIRYGREDVTMDEIEKAVKEA------- 503
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM-RMSLGK 272
+F + KL P F G+R + SG Q R+++ +
Sbjct: 504 --NAYDF------------------IMKL-PH-QFDTLVGER--GAQLSGGQKQRIAIAR 539
Query: 273 ILLQDPDLLLLDEPTNHLD 291
L+++P +LLLDE T+ LD
Sbjct: 540 ALVRNPKILLLDEATSALD 558
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 7e-12
Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 62/246 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG----- 152
+ + ++ K Y G VLK V+ + + G+ + ++G +G+GK+T LR I E+P G
Sbjct: 7 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVN 66
Query: 153 --NVIKAKSNMKIAFLSQEFEVSMSRT----VREEF-----MSAFKEEMEIAGKLERVQK 201
N+ + ++ + ++ + RT V + F M+ + ME ++ + K
Sbjct: 67 GQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSK 126
Query: 202 --ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
A E A+ L + V +D + P
Sbjct: 127 HDARERALK-------------YLAK----VGID---ERAQGKYP-------------VH 153
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVII 312
S G Q R+S+ + L +PD+LL DEPT+ LD L ++ L ++ MV++
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQ----QLAEEGKTMVVV 209
Query: 313 SHDRAF 318
+H+ F
Sbjct: 210 THEMGF 215
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 2e-10
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 21/92 (22%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
+L G+ +IIG +G GKST L+ I LEKP G +++ N+ + Q + D
Sbjct: 26 SLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 85
Query: 504 D---------------------KTVLETVAEA 514
+ TVLE V EA
Sbjct: 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA 117
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 9e-12
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
Query: 373 INRLGAGAN---SGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKN 429
+N L N AS AE+ E L EE+ + P + ++R G + KN
Sbjct: 310 LNELSNQFNMIQMALAS-AERIFEILDLEEEKDDPDAVELREVR-------GE--IEFKN 359
Query: 430 LEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
+ F Y + + + I+ G+K A++GP G GK+T++ L+M G++L+ ++
Sbjct: 360 VWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDI 419
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 6e-07
Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTT 138
++ +N+ SY K VLKD+T+ +K G+KV LVG G+GKTT
Sbjct: 355 IEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTT 396
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 40/209 (19%), Positives = 75/209 (35%), Gaps = 50/209 (23%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ +++++ Y G +L+++++ + G++VGL+G G+GK+T L G +
Sbjct: 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGEIQ 78
Query: 156 KAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ + Q+ S T R+ + + + + K +
Sbjct: 79 IDGVSWDSITLEQWRKAFGVIPQK-VFIFSGTFRKN-LDPNAAHSD-----QEIWKVADE 131
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
L + K LD + D G S G +
Sbjct: 132 V--------GLRSVIEQFPGK--------LDFVLV----------DGGC----VLSHGHK 161
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
M L + +L +LLLDEP+ HLD T
Sbjct: 162 QLMCLARSVLSKAKILLLDEPSAHLDPVT 190
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 415 PERGRSGRSVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472
P G+ +T+K+L Y + + +I G++ ++G G GKSTLL +
Sbjct: 15 PSGGQ-----MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69
Query: 473 LEKPRG 478
L G
Sbjct: 70 LLNTEG 75
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 4e-11
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 407 RKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTL 466
G +++IK+L ED+ + +L + GE AI+GPNG GKSTL
Sbjct: 3 SSHHHHHSSGLVPRGSHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTL 62
Query: 467 LKLIMGLEKPR----GGEVLLGEHNVL 489
+ G + GG V ++L
Sbjct: 63 SATLAG--REDYEVTGGTVEFKGKDLL 87
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 5e-11
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR----G 478
S + I++L + + NL + +GE A++GPNG GKSTL K++ G P
Sbjct: 2 SQLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG--DPEYTVER 59
Query: 479 GEVLLGEHNVL 489
GE+LL N+L
Sbjct: 60 GEILLDGENIL 70
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 6e-11
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 425 VTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +N+ F Y+ ++ + NL+I++GE I+G +G GKSTL KLI P G+VL
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 483 LGEHNV 488
+ H++
Sbjct: 68 IDGHDL 73
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 8e-09
Identities = 43/214 (20%), Positives = 86/214 (40%), Gaps = 64/214 (29%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
+ NI YK +L ++ +K+GE +G+VG +G+GK+T ++I P++G V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 155 --------IKAKS-NMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GK----LE 197
++ + Q+ +R++ + I+ +E
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLL----NRSIID----------NISLANPGMSVE 113
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
+V A + A +F +S+L E G+ G++
Sbjct: 114 KVIYAAKLAG---------AHDF------------------ISEL-RE-GYNTIVGEQGA 144
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G + R+++ + L+ +P +L+ DE T+ LD
Sbjct: 145 -GLSGGQRQRIAIARALVNNPKILIFDEATSALD 177
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 1e-10
Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 24/126 (19%)
Query: 441 NRANLTIERG-EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNY----- 492
R N+ E G + ++GP G GKS L+LI G+ KP GEV L ++ LP
Sbjct: 14 FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIG 73
Query: 493 --FEQNQAEALDLDKTVLETVA-------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSL 543
Q AL +V +A D R+ ++ LG A +LDRK +
Sbjct: 74 FVP---QDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGI----AHLLDRKPAR 126
Query: 544 LSGGEK 549
LSGGE+
Sbjct: 127 LSGGER 132
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 1e-08
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
K + D + L+G GAGK+ L +IAG +PD G V
Sbjct: 6 RAEKRLGNFRLNVDFE---MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVR 56
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 384 RAS-SAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE--DRLLF 440
RAS SA++ LE L E+ IE+ + V+ +N+EF Y +
Sbjct: 308 RASASAKRVLEVLNEKPAIEEADN--------ALALPNVEGSVSFENVEFRYFENTDPVL 359
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
+ N +++ G A++G G GKSTL+ LI L P G V + E +V
Sbjct: 360 SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV 407
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
V EN+ Y T VL V + VK G V ++G G+GK+T + +I +P+ G V
Sbjct: 342 VSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV 400
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 3e-10
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 424 VVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+++ ++++F Y+D + + + A GP+G GKST+ L+ +P GE+
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 483 LGEHNV 488
+ +
Sbjct: 61 IDGQPI 66
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 2e-09
Identities = 40/213 (18%), Positives = 82/213 (38%), Gaps = 56/213 (26%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
+ ++ +Y +L+D+++E + + G +G GK+T ++ +P +G +
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 155 -------IKAKS-NMKIAFLSQEFEVSMSRTVRE-----EFMSAFKEEMEIAGKLERVQK 201
I ++ +I F+SQ+ M+ T+RE E++ L
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQD-SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAF--- 117
Query: 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261
F V + P+ + G+R V S
Sbjct: 118 ---------------ARSF------------------VENM-PD-QLNTEVGERGV-KIS 141
Query: 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
G + R+++ + L++P +L+LDE T LD ++
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSES 174
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 366 IEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVV 425
+ + L +S ++ + + E+ I+ + ++ ++GR +
Sbjct: 294 LRRLVASFTTLTQSF-----ASMDRVFQLIDEDYDIKNGVGAQPIE---IKQGR-----I 340
Query: 426 TIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
I ++ F Y D + NL+IE+GE A +G +G GKSTL+ LI G++L+
Sbjct: 341 DIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILI 400
Query: 484 GEHNV 488
HN+
Sbjct: 401 DGHNI 405
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 1e-07
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 64/217 (29%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
+ ++++S Y +LKD+ ++KGE V VG++G GK+T + +I + SG +
Sbjct: 340 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 399
Query: 155 --------IKAKS-NMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GKL----E 197
S +I + Q+ F S TV+E I G+ E
Sbjct: 400 IDGHNIKDFLTGSLRNQIGLVQQDNILF----SDTVKE----------NILLGRPTATDE 445
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
V +A A+ N + L P+ G+ + G+R V
Sbjct: 446 EVVEA------------------------AKMANAHDF---IMNL-PQ-GYDTEVGERGV 476
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
S G + R+S+ +I L +P +L+LDE T+ LDL++
Sbjct: 477 -KLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 6e-10
Identities = 19/108 (17%), Positives = 44/108 (40%), Gaps = 18/108 (16%)
Query: 386 SSAEKKLERLQEEEQIE---KPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE--DRLLF 440
++ + + E + + +R ++ K++ F Y+ ++
Sbjct: 313 AACQTLFGLMDLETERDNGKYEAERVNGEVDV-------------KDVTFTYQGKEKPAL 359
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
+ + +I +G+ A++G +G GKST+ L G + L H+V
Sbjct: 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDV 407
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 5e-08
Identities = 55/257 (21%), Positives = 109/257 (42%), Gaps = 59/257 (22%)
Query: 57 KSIAKAQSDVESLFSSSADEFE--NKKYSNKQSNTGASSISSGVKLENISKSYKG--VTV 112
K++ S+ + ++ F + + A ++ V +++++ +Y+G
Sbjct: 299 KALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPA 358
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAKS-NMK 162
L V++ + +G+ V LVG +G+GK+T + + DSG++ K +
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418
Query: 163 IAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
A +SQ F + T+ A+ E E E++++A A E
Sbjct: 419 FALVSQNVHLF----NDTIANNI--AYAAEGEYT--REQIEQAARQA---------HAME 461
Query: 220 F--DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
F ++ Q LDT +G ++G L S G + R+++ + LL+D
Sbjct: 462 FIENMPQ------GLDT----------VIG---ENGTSL----SGGQRQRVAIARALLRD 498
Query: 278 PDLLLLDEPTNHLDLDT 294
+L+LDE T+ LD ++
Sbjct: 499 APVLILDEATSALDTES 515
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 7e-10
Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 21/124 (16%)
Query: 373 INRLGAGANSGRAS--SAEKKLERLQEEEQIE-----KPFQRKQMKIRFPERGRSGRSVV 425
+ G E + L+EE +++ P + ++ +I F
Sbjct: 8 HHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEF----------- 56
Query: 426 TIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+N+ F Y R + T+ G+ A++GP+G GKST+L+L+ G + +
Sbjct: 57 --ENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRID 114
Query: 485 EHNV 488
++
Sbjct: 115 GQDI 118
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 6e-07
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ EN+ SY G L+DV++ V G+ + LVG +GAGK+T LR++ + SG +
Sbjct: 54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI 111
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 18/109 (16%)
Query: 385 ASSAEKKLERLQEEEQI---EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE--DRLL 439
++ + L E++ ++ R + F +N+ F Y +
Sbjct: 312 MAACQTLFAILDSEQEKDEGKRVIDRATGDLEF-------------RNVTFTYPGREVPA 358
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
NL I G+ A++G +G GKST+ LI G +L+ H++
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDL 407
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 47/218 (21%), Positives = 90/218 (41%), Gaps = 65/218 (29%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
++ N++ +Y G V L+++ ++ G+ V LVG +G+GK+T +I + D G++
Sbjct: 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401
Query: 155 --------IKAKS-NMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GKL----- 196
S ++A +SQ F + TV IA +
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNVHLF----NDTVAN----------NIAYARTEEYSR 447
Query: 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256
E++++A A +F ++K+ G G+
Sbjct: 448 EQIEEAARMA---------YAMDF------------------INKM-DN-GLDTIIGENG 478
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
V S G + R+++ + LL+D +L+LDE T+ LD ++
Sbjct: 479 V-LLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 1e-09
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 425 VTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
V +++ F Y + + T+ G+ TA++GPNG GKST+ L+ L +P GG+V
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 482 LLGEHNV 488
LL +
Sbjct: 77 LLDGEPL 83
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 7e-08
Identities = 47/219 (21%), Positives = 84/219 (38%), Gaps = 72/219 (32%)
Query: 98 VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE---EPDS 151
VK +++S +Y V VL+ +T+ + G+ LVG NG+GK+T + A + +P
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKST---VAALLQNLYQPTG 73
Query: 152 GNV------IKAKSNMK-----IAFLSQE---FEVSMSRTVRE-----EFMSAFKEEMEI 192
G V + + + +A + QE F R+ RE + EE+
Sbjct: 74 GKVLLDGEPLV-QYDHHYLHTQVAAVGQEPLLF----GRSFRENIAYGLTRTPTMEEITA 128
Query: 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
+ A + +S P+ G+ +
Sbjct: 129 VAME------------------------------SGAHDF------ISGF-PQ-GYDTEV 150
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G+ S G + ++L + L++ P LL+LD T+ LD
Sbjct: 151 GETGN-QLSGGQRQAVALARALIRKPRLLILDNATSALD 188
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 1e-09
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
NL I+ GE +I+GP+G GKST+L +I L+KP GEV +
Sbjct: 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKT 69
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 1e-08
Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 70/247 (28%)
Query: 98 VKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG- 152
VKL+N++K+YK + LK+V +K+GE V ++G +G+GK+T L II ++P G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 153 ------NVIKAKS-------NMKIAFLSQEFEVSMSRTVRE--EFMSAFKEEMEIAGKLE 197
KI F+ Q+F + T E E FK ++G+ E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE-E 120
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP-ELGFTADDGDRL 256
R ++ALE L +L +R + P +L
Sbjct: 121 RRKRALE-----------CLKMAELEER-------------FANHKPNQL---------- 146
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPM 309
S G Q R+++ + L +P ++L D+PT LD + ++ L GK +
Sbjct: 147 ----SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKT---V 199
Query: 310 VIISHDR 316
V+++HD
Sbjct: 200 VVVTHDI 206
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 1e-08
Identities = 30/91 (32%), Positives = 56/91 (61%), Gaps = 7/91 (7%)
Query: 93 SISSG-VKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP 149
S+++ V +EN++ + G VLKD+ +++++G+ + + G GAGKT+ L +I G+ EP
Sbjct: 1 SLTTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 60
Query: 150 DSGNVIKAKSNMKIAFLSQEFEVSMSRTVRE 180
G + K + +I+F SQ + M T++E
Sbjct: 61 SEGKI---KHSGRISFCSQFSWI-MPGTIKE 87
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-08
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 425 VTIKNLEFGYEDRLLF--NRANLTIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRG 478
V ++N+ +E+ N IERG+ A+ G G GK++LL +IMG LE G
Sbjct: 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 1e-08
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 425 VTIKNLEFGYE---DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
+ ++ F Y + N I G A++G G GKST+ KL+
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 4e-07
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 87 SNTGASSISSG-VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRI 142
S T ++ +++ SY LK + + + G LVG G+GK+T ++
Sbjct: 6 SLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKL 65
Query: 143 I 143
+
Sbjct: 66 L 66
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 2e-08
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 425 VTIKNLEFGYEDRLLF--NRANLTIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRG 478
+T++N F + N +I G A++G GCGKS+LL ++ ++K G
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 1e-06
Identities = 21/109 (19%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 98 VKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ + N + ++ L +T+ + +G V +VG G GK++ L + + + G+V
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV- 62
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREE--FMSAFKEEMEIAGKLERVQKA 202
+A++ Q+ + + ++RE F +E V +A
Sbjct: 63 --AIKGSVAYVPQQAWI-QNDSLRENILFGCQLEEP-----YYRSVIQA 103
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 6e-08
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 62 AQSDVE----SLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVT 117
+ ++V + F +K +N S+ + N S VLKD+
Sbjct: 1 STTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGT--PVLKDIN 58
Query: 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177
+++++G+ + + G GAGKT+ L +I G+ EP G + K + +I+F SQ + M T
Sbjct: 59 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI---KHSGRISFCSQNSWI-MPGT 114
Query: 178 VRE 180
++E
Sbjct: 115 IKE 117
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 386 SSAEKKLERLQEE-EQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRAN 444
S+ E +E + E+ K + + +G ++ N L N
Sbjct: 1 STTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVL--KDIN 58
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
IERG+ A+ G G GK++LL +IMG +P G++
Sbjct: 59 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 3e-07
Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 12/180 (6%)
Query: 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQR 225
+ + + T ++ +E+V+K A + + + +
Sbjct: 157 VREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSK--IGELASEIFA 214
Query: 226 KAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM------RMSLGKILLQDPD 279
+ + + + L + +R + S G ++ R+++ L +
Sbjct: 215 EFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEIS 274
Query: 280 LLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI-ISHDRAFLDQLCTKI-VETEMGVSR 335
LL+LDEPT +LD + L + + + +P VI +SHD D I + E G S+
Sbjct: 275 LLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGSSK 334
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 4e-06
Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 14/171 (8%)
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238
R + MS ++E E K + L +++ L +K D
Sbjct: 196 RLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLP 255
Query: 239 VSKL----MPELGFTADDGDRLVASFSSGWQMRMSLG-------KILLQDPDLLLLDEPT 287
S + E+ A +G + + S G Q+ ++L ++ + ++LDEPT
Sbjct: 256 YSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPT 315
Query: 288 NHLDLDTIEWLEGYLGK-QDVP-MVIISHDRAFLDQLCTKI-VETEMGVSR 335
+LD + L K + +P M+II+H R D I V+ + VS+
Sbjct: 316 VYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVKKDGNVSK 366
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 554 | |||
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.97 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.97 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.96 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.96 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.96 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.96 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.96 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.96 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.94 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 99.94 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 99.94 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 99.93 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 99.93 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.93 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 99.93 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.93 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 99.93 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.93 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 99.93 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 99.93 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 99.93 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 99.93 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.93 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.93 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 99.93 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 99.93 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 99.93 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 99.93 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 99.92 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.92 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.92 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.92 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.92 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.92 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.92 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.91 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.91 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 99.91 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.91 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.91 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 99.91 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.91 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.91 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.9 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.9 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.9 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.9 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.9 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.9 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.9 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.89 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.88 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.88 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.87 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.87 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.87 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.87 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 99.86 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.86 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.86 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.86 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.86 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.86 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.86 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.85 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.85 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.85 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.85 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.84 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.83 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.82 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.82 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.81 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.8 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.8 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.8 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.79 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.79 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.78 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.78 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.78 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.77 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.76 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.75 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.75 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.72 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.7 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.7 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.69 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.67 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.67 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.66 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.66 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.65 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.64 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.62 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.57 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.56 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.55 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.53 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.53 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.51 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.51 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.5 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.5 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.48 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.46 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.44 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.43 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.42 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.42 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.4 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.4 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.38 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.38 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.36 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.36 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.35 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.35 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.34 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.34 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.33 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.32 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.32 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.3 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.29 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.27 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.27 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.25 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.24 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.23 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.22 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.21 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.21 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.18 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.18 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.18 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.17 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.17 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.12 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.11 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.11 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.09 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.09 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.08 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.07 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.06 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.05 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.05 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.05 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.05 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.03 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.02 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.02 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.02 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.01 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.01 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.94 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.92 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.88 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 98.88 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 98.87 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.86 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.84 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 98.83 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 98.82 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.81 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 98.81 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.8 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 98.79 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.78 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.76 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 98.75 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.75 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.75 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.74 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.74 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 98.74 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.73 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.73 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.73 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.71 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.71 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.7 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 98.66 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.64 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.63 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.63 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.63 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.61 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 98.57 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.57 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.56 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.54 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.54 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.51 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 98.51 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.5 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.48 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.45 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 98.43 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.43 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.42 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.4 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 98.39 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.39 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 98.38 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.38 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.37 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 98.37 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 98.36 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.36 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 98.35 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.34 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 98.33 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 98.3 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.3 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.29 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.29 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 98.29 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.28 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.28 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.27 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.24 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.23 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.23 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.23 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 98.2 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.16 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 98.15 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 98.15 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 98.15 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.14 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.14 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.12 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.12 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 98.1 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.1 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 98.09 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.08 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.06 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 98.06 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 98.06 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 98.04 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 98.04 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.03 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.02 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.02 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 98.0 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.99 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.99 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.98 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.96 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 97.95 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.94 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.93 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.91 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.91 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 97.9 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.9 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.9 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.89 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 97.89 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.89 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 97.89 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.87 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.87 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.84 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.83 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 97.83 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.83 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.82 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.81 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.81 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.8 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.77 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.77 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.76 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.76 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 97.76 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.75 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.74 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.73 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 97.72 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.71 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.69 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.67 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.63 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 97.62 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.61 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.58 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.58 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.57 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.57 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 97.56 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.55 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.52 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.48 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.48 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 97.48 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.47 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.46 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.44 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.43 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 97.43 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.42 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.41 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.4 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.39 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.36 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.36 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.36 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.34 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.32 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.28 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.27 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 97.24 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.21 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.2 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.19 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.17 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.17 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.16 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.16 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 97.15 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.13 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.13 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.12 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.12 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.11 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.08 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.07 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.07 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.05 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 97.05 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.03 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.0 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.0 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.0 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.0 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.99 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.99 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.98 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.97 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.97 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.97 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.96 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.96 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.95 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.94 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 96.92 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.92 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.85 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.85 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 96.84 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.84 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.82 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.82 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.81 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.8 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.77 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.76 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 96.74 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.73 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.72 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.7 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.68 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.67 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.66 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.65 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.61 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.61 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.6 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.59 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.57 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.56 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.56 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 96.56 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.55 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.55 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.54 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 96.52 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.43 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.33 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.32 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.32 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.31 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.29 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.28 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.27 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.26 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.23 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.23 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.21 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.2 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.18 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.15 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.14 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.13 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.11 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.1 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 96.09 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 96.09 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.08 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 96.07 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.07 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.05 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.04 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.04 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.0 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.0 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.98 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.96 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.96 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 95.96 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.95 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.95 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.95 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.95 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 95.94 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.92 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.92 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 95.91 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.88 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.85 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.84 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.83 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 95.82 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.81 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.76 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.75 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.75 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.75 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.74 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.73 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.73 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.72 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.71 |
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-61 Score=553.35 Aligned_cols=302 Identities=30% Similarity=0.549 Sum_probs=241.0
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHC-CCCCCceeEEEcCCCceEEEEeccc-ccc
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG-QEEPDSGNVIKAKSNMKIAFLSQEF-EVS 173 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G-~~~p~~G~I~~~~~~~~i~~v~Q~~-~~~ 173 (554)
..|...|++++|+++.+|+|+||+|++|++++|+|+||||||||+|+|+| .+ .|. .. ....+++|++|++ .++
T Consensus 434 ~~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~-~~-~~~~~~~~v~q~~~~~~ 508 (986)
T 2iw3_A 434 EDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGF-PT-QEECRTVYVEHDIDGTH 508 (986)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTC-CC-TTTSCEEETTCCCCCCC
T ss_pred ceeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCC-cc-ccceeEEEEcccccccc
Confidence 34777799999999999999999999999999999999999999999994 22 110 00 0123578999985 566
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcccc
Q 008771 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (554)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (554)
+..||.+++... ... . ..++.++|+.+||.....
T Consensus 509 ~~ltv~e~l~~~-------------------------------------------~~~--~-~~~v~~~L~~lgL~~~~~ 542 (986)
T 2iw3_A 509 SDTSVLDFVFES-------------------------------------------GVG--T-KEAIKDKLIEFGFTDEMI 542 (986)
T ss_dssp TTSBHHHHHHTT-------------------------------------------CSS--C-HHHHHHHHHHTTCCHHHH
T ss_pred cCCcHHHHHHHh-------------------------------------------hcC--H-HHHHHHHHHHcCCChhhh
Confidence 788999887420 000 1 456778899999965667
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 254 ~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
++++.+|||||||||+|||||+.+|+||||||||||||+.++.+|.++|++.|+|||+||||++++..+||+|++|++|+
T Consensus 543 ~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 543 AMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp HSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 89999999999999999999999999999999999999999999999998788999999999999999999999999999
Q ss_pred eeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhhccccccccceee
Q 008771 334 SRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIR 413 (554)
Q Consensus 334 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 413 (554)
+..|.|+++++........ ... . +. .. ...+.
T Consensus 623 iv~~~G~~~e~~~~~~~~~----------------------~~~---~-------------l~-----~~-----~~~~~ 654 (986)
T 2iw3_A 623 LRKYKGNFTEFVKKCPAAK----------------------AYE---E-------------LS-----NT-----DLEFK 654 (986)
T ss_dssp EEEEESCHHHHHHHCGGGG----------------------GSS---S-------------TT-----TC-----CCCCC
T ss_pred eecCCCCHHHHHhhhHHHH----------------------HHH---h-------------hh-----hh-----hhhcc
Confidence 8778999987754211000 000 0 00 00 00011
Q ss_pred ccC------CCCCCCceEEEeeeeEecCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008771 414 FPE------RGRSGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (554)
Q Consensus 414 ~~~------~~~~~~~~l~~~~l~~~y~~--~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~ 485 (554)
++. ....++++|+++|++|.|++ +.+|+++||+|.+||++||+||||||||||+|+|+|+++|++|+|++++
T Consensus 655 ~p~~~~~~~~~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 655 FPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp CCCCCCCTTCCSTTSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred ccccccccccccCCCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence 111 01235678999999999975 5789999999999999999999999999999999999999999999975
Q ss_pred ceeeEEEEeccc
Q 008771 486 HNVLPNYFEQNQ 497 (554)
Q Consensus 486 ~~~~~~y~~Q~~ 497 (554)
+..++|++|++
T Consensus 735 -~~~I~yv~Q~~ 745 (986)
T 2iw3_A 735 -NCRIAYIKQHA 745 (986)
T ss_dssp -TCCEEEECHHH
T ss_pred -ccceEeeccch
Confidence 45689999975
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-61 Score=530.90 Aligned_cols=357 Identities=24% Similarity=0.307 Sum_probs=265.0
Q ss_pred EEE-EeEEEEeCCe-eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeE---------EEcCCC------
Q 008771 98 VKL-ENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAKSN------ 160 (554)
Q Consensus 98 i~~-~~ls~~y~~~-~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I---------~~~~~~------ 160 (554)
.++ +||+|+|+++ .+|+++| +|++||++||+|+||||||||+|+|+|+++|++|++ .++|..
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 455 6999999876 4999999 999999999999999999999999999999999995 233321
Q ss_pred ------ceEEEEecccccccC---ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCC
Q 008771 161 ------MKIAFLSQEFEVSMS---RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (554)
Q Consensus 161 ------~~i~~v~Q~~~~~~~---~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (554)
..+++++|.....+. .|+.+++..
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~----------------------------------------------- 132 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK----------------------------------------------- 132 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHH-----------------------------------------------
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhh-----------------------------------------------
Confidence 357888887654332 266554310
Q ss_pred cccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCe
Q 008771 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVP 308 (554)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~t 308 (554)
.....++.++|+.+|+. ...++++.+|||||||||+||+||+.+|+|||||||||+||+.++.++.++|++ .|+|
T Consensus 133 -~~~~~~~~~~l~~lgl~-~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~t 210 (538)
T 1yqt_A 133 -ADETGKLEEVVKALELE-NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKS 210 (538)
T ss_dssp -HCSSSCHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred -hhHHHHHHHHHHHcCCC-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 00113467788999996 467899999999999999999999999999999999999999999888887743 5899
Q ss_pred EEEEecCHHHHHhhcceEEEeeCCee--eeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhH
Q 008771 309 MVIISHDRAFLDQLCTKIVETEMGVS--RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRAS 386 (554)
Q Consensus 309 vIiisHd~~~l~~~~d~i~~l~~g~~--~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (554)
||+||||++++..+||+|++|+++.. ..+..++.... .+ ..........
T Consensus 211 vi~vsHd~~~~~~~~dri~vl~~~~~~~~~~~~~~~~~~-------------------~~---~~~~~~~~~~------- 261 (538)
T 1yqt_A 211 VLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRN-------------------GI---NEFLRGYLKD------- 261 (538)
T ss_dssp EEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH-------------------HH---HHHHHTEETT-------
T ss_pred EEEEeCCHHHHHHhCCEEEEEcCcccccccccchhhHHH-------------------HH---HHHhhhccch-------
Confidence 99999999999999999999985421 12333333100 00 0000000000
Q ss_pred HHHHHHHHHHHhhhhccccccccceeeccCCC--CCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHH
Q 008771 387 SAEKKLERLQEEEQIEKPFQRKQMKIRFPERG--RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKS 464 (554)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKS 464 (554)
.. .... .....+.++... ..++++++++|+++.|++. .|+.+||+|++||++||+||||||||
T Consensus 262 -----------~~-~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKS 326 (538)
T 1yqt_A 262 -----------EN-VRFR--PYEIKFTKTGERVEIERETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKT 326 (538)
T ss_dssp -----------TT-EECS--SSCCCCCCSSGGGSSCCCEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHH
T ss_pred -----------hh-hccc--ccccccccCCcccccCCCeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHH
Confidence 00 0000 000011111111 1356789999999999774 68999999999999999999999999
Q ss_pred HHHHHHhCCCCCCceEEEECCceeeEEEEecccccCCCCCCCHHHHHHhh-ccc-CCHHHHHHHHhhCCCChhhhccccC
Q 008771 465 TLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AED-WRIDDIKGLLGRCNFKADMLDRKVS 542 (554)
Q Consensus 465 TLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~-~~~-~~~~~~~~~L~~~~l~~~~~~~~~~ 542 (554)
||+++|+|+++|++|+|.+. ..++|++|++. ..+..||.+++... ... .....++.+|+.+++. +..++++.
T Consensus 327 TLlk~l~Gl~~p~~G~i~~~---~~i~~v~Q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~ 400 (538)
T 1yqt_A 327 TFVKMLAGVEEPTEGKIEWD---LTVAYKPQYIK--ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII-DLYDREVN 400 (538)
T ss_dssp HHHHHHHTSSCCSBCCCCCC---CCEEEECSSCC--CCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG-GGTTSBGG
T ss_pred HHHHHHhCCCCCCCeEEEEC---ceEEEEecCCc--CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh-hhhcCChh
Confidence 99999999999999999873 45899999863 45778998887643 111 1245678899999995 67899999
Q ss_pred cCChhhhhcccC
Q 008771 543 LLSGGEKIILLY 554 (554)
Q Consensus 543 ~LSGGek~Rl~l 554 (554)
.|||||||||+|
T Consensus 401 ~LSGGe~qrv~l 412 (538)
T 1yqt_A 401 ELSGGELQRVAI 412 (538)
T ss_dssp GCCHHHHHHHHH
T ss_pred hCCHHHHHHHHH
Confidence 999999999975
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-61 Score=533.78 Aligned_cols=358 Identities=24% Similarity=0.320 Sum_probs=267.7
Q ss_pred cEEE--------EeEEEEeCCe-eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeE---------EEcC
Q 008771 97 GVKL--------ENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAK 158 (554)
Q Consensus 97 ~i~~--------~~ls~~y~~~-~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I---------~~~~ 158 (554)
+|++ +||+++|++. .+|+++| +|++||++||+|+||||||||+|+|+|+++|++|++ .+.|
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 4788 8999999876 4999999 999999999999999999999999999999999995 2333
Q ss_pred CC------------ceEEEEeccccccc---CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Q 008771 159 SN------------MKIAFLSQEFEVSM---SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLL 223 (554)
Q Consensus 159 ~~------------~~i~~v~Q~~~~~~---~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (554)
.. ..+++++|.....+ ..||.+++...
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-------------------------------------- 203 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-------------------------------------- 203 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT--------------------------------------
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh--------------------------------------
Confidence 21 24788888754332 23776664210
Q ss_pred HHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc
Q 008771 224 QRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (554)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 303 (554)
....++.++|+.+||. +..++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+
T Consensus 204 ----------~~~~~~~~~L~~lgL~-~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~ 272 (607)
T 3bk7_A 204 ----------DEVGKFEEVVKELELE-NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR 272 (607)
T ss_dssp ----------CCSSCHHHHHHHTTCT-TGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHcCCC-chhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 0113466788899996 56799999999999999999999999999999999999999999988888775
Q ss_pred c---CCCeEEEEecCHHHHHhhcceEEEeeCCee--eeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 008771 304 K---QDVPMVIISHDRAFLDQLCTKIVETEMGVS--RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGA 378 (554)
Q Consensus 304 ~---~g~tvIiisHd~~~l~~~~d~i~~l~~g~~--~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (554)
+ .|.|||+||||++++..+||+|++|+++.. ..+...+.... .+ .........
T Consensus 273 ~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~~~~g~~~~~~~~~~-------------------~i---~~~~~~~~~ 330 (607)
T 3bk7_A 273 RLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRN-------------------GI---NEFLQGYLK 330 (607)
T ss_dssp HHHHTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEHHH-------------------HH---HHHHHTEET
T ss_pred HHHhcCCEEEEEecChHHHHhhCCEEEEECCCccccceeccchhHHH-------------------HH---HHHHhhcch
Confidence 3 489999999999999999999999986421 11222222100 00 000000000
Q ss_pred CCCchhhHHHHHHHHHHHHhhhhccccccccceeeccCCC--CCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEE
Q 008771 379 GANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG--RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAII 456 (554)
Q Consensus 379 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIv 456 (554)
. +. .. .......+.++... ..++++++++|+++.|++. .|+.+||+|.+||++||+
T Consensus 331 ~------------------~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~ 388 (607)
T 3bk7_A 331 D------------------EN-VR--FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIV 388 (607)
T ss_dssp T------------------TT-EE--CCSSCCCCCCSTTSCCCCCCEEEEECCEEEECSSC-EEEECCEEEETTCEEEEE
T ss_pred h------------------hh-hh--ccccccccccCCCcccccCceEEEEeceEEEecce-EEEecccccCCCCEEEEE
Confidence 0 00 00 00000111111111 1356789999999999864 689999999999999999
Q ss_pred CCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEecccccCCCCCCCHHHHHHhh-ccc-CCHHHHHHHHhhCCCCh
Q 008771 457 GPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AED-WRIDDIKGLLGRCNFKA 534 (554)
Q Consensus 457 G~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~-~~~-~~~~~~~~~L~~~~l~~ 534 (554)
||||||||||+++|+|+++|++|+|.+. ..++|++|++. +.++.||.+++... ... .....+..+|+.+++.
T Consensus 389 G~NGsGKSTLlk~l~Gl~~p~~G~I~~~---~~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~- 462 (607)
T 3bk7_A 389 GPNGIGKTTFVKMLAGVEEPTEGKVEWD---LTVAYKPQYIK--AEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII- 462 (607)
T ss_dssp CCTTSSHHHHHHHHHTSSCCSBSCCCCC---CCEEEECSSCC--CCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT-
T ss_pred CCCCCCHHHHHHHHhcCCCCCceEEEEe---eEEEEEecCcc--CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc-
Confidence 9999999999999999999999999773 45799999863 45778998887653 111 1234578899999996
Q ss_pred hhhccccCcCChhhhhcccC
Q 008771 535 DMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 535 ~~~~~~~~~LSGGek~Rl~l 554 (554)
+..++++..|||||||||+|
T Consensus 463 ~~~~~~~~~LSGGe~QRv~i 482 (607)
T 3bk7_A 463 DLYDRNVEDLSGGELQRVAI 482 (607)
T ss_dssp TTTTSBGGGCCHHHHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHH
Confidence 57899999999999999975
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-59 Score=559.54 Aligned_cols=258 Identities=24% Similarity=0.353 Sum_probs=189.5
Q ss_pred HhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC---eeeEEceeEEEECCCE
Q 008771 49 VSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGEK 125 (554)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge~ 125 (554)
+......+..++.+..+++|+++..+.+++..... .....+....+.|+++||+|+|++ .++|+||||+|++||+
T Consensus 341 ~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~--~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~ 418 (1284)
T 3g5u_A 341 VGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFS--KSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQT 418 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCC--SSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccc--ccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCE
Confidence 33444555668888899999988776543321110 001111123456999999999964 4699999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
+||||+||||||||+++|+|+++|++|+|.++|.+. .||||+|++.++. .||+||+..+.... .
T Consensus 419 ~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~g~~~~-~---- 492 (1284)
T 3g5u_A 419 VALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA-TTIAENIRYGREDV-T---- 492 (1284)
T ss_dssp EEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCS-SCHHHHHHHHCSSC-C----
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCC-ccHHHHHhcCCCCC-C----
Confidence 999999999999999999999999999999998643 4999999998864 59999997532100 0
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 275 (554)
.+.+. ..+... .....+..+-. |++ ........+|||||||||+|||||+
T Consensus 493 ~~~~~------------------------~~~~~~---~~~~~i~~l~~--g~~-t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 493 MDEIE------------------------KAVKEA---NAYDFIMKLPH--QFD-TLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp HHHHH------------------------HHHHHT---TCHHHHHHSTT--GGG-CCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred HHHHH------------------------HHHHHh---CcHHHHHhccc--ccc-ccccCCCCccCHHHHHHHHHHHHHh
Confidence 00000 000000 01111111111 221 1234556799999999999999999
Q ss_pred cCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
.+|+|||||||||+||+.+..++.+.++. .|+|+|+||||++++.. ||+|++|++|++ ...|+++++..
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i-~~~g~~~~l~~ 613 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVI-VEQGNHDELMR 613 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCC-CCEECHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEE-EEECCHHHHHh
Confidence 99999999999999999999998887753 58999999999999976 999999999987 56788877654
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-58 Score=548.27 Aligned_cols=260 Identities=20% Similarity=0.304 Sum_probs=191.7
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC---eeeEEceeEEEECCC
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGE 124 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge 124 (554)
.+......+..++.+..+++|+++..+.++...... .....+......|+++||+|+|++ .++|+|+||+|++|+
T Consensus 368 ~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~--~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~ 445 (1321)
T 4f4c_A 368 ALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSS--KAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQ 445 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSS--SCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccc--cccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCc
Confidence 445555566778889999999988765543322111 111112233456999999999963 579999999999999
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHH
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 194 (554)
++||||++|||||||+++|.|+++|++|+|.++|.+. .|+||+|++.+ ++.||+||+..+.... .
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~L-f~~TI~eNI~~g~~~~-~--- 520 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPAL-FNCTIEENISLGKEGI-T--- 520 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCC-CSEEHHHHHHTTCTTC-C---
T ss_pred EEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCccee-eCCchhHHHhhhcccc-h---
Confidence 9999999999999999999999999999999998643 59999999988 6779999997542100 0
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHH
Q 008771 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274 (554)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL 274 (554)
.+++.+ .+.... ++..+..+-+ |++... ...-..|||||||||+||||+
T Consensus 521 -~~~v~~------------------------a~~~a~---l~~~i~~lp~--G~~T~v-Ge~G~~LSGGQkQRiaiARAl 569 (1321)
T 4f4c_A 521 -REEMVA------------------------ACKMAN---AEKFIKTLPN--GYNTLV-GDRGTQLSGGQKQRIAIARAL 569 (1321)
T ss_dssp -HHHHHH------------------------HHHHTT---CHHHHHHSTT--TTSSEE-SSSSCCCCHHHHHHHHHHHHH
T ss_pred -HHHHHH------------------------HHHHcc---chhHHHcCCC--CCccEe-cCCCCCCCHHHHHHHHHHHHH
Confidence 000000 111000 1111221111 333222 223468999999999999999
Q ss_pred ccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 275 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
+.+|+|||||||||+||+++...+.+.|.+ .|+|+|+|||+++.+. .||+|++|++|++ ...|++++.+..
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~i-ve~Gth~eL~~~ 642 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQV-VEVGDHRALMAQ 642 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEE-EEEECHHHHHTT
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCee-eccCCHHHHHHh
Confidence 999999999999999999998888887754 5899999999999996 5999999999998 456777776543
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-56 Score=490.16 Aligned_cols=355 Identities=23% Similarity=0.274 Sum_probs=251.5
Q ss_pred EeEEEEeCCeeeEEceeEEEE-CCCEEEEECCCCccHHHHHHHHHCCCCCCceeE-----------EEcCCC--------
Q 008771 101 ENISKSYKGVTVLKDVTWEVK-KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-----------IKAKSN-------- 160 (554)
Q Consensus 101 ~~ls~~y~~~~~l~~isl~i~-~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I-----------~~~~~~-------- 160 (554)
++.+.+|+.+. |+-..|.+. +||++|||||||||||||+|+|+|+++|++|+| .+.|..
T Consensus 3 ~~~~~~~~~~~-f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~ 81 (538)
T 3ozx_A 3 GEVIHRYKVNG-FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81 (538)
T ss_dssp CCEEEESSTTS-CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred CCCceecCCCc-eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence 35678897442 444455555 899999999999999999999999999999998 344332
Q ss_pred ----ceEEEEecccccc---cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcc
Q 008771 161 ----MKIAFLSQEFEVS---MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (554)
Q Consensus 161 ----~~i~~v~Q~~~~~---~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (554)
..+....|..... +..++.+++.. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~------------------------------------------------~ 113 (538)
T 3ozx_A 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTK------------------------------------------------I 113 (538)
T ss_dssp HTTCCCEEEECSCTTGGGTTCCSBHHHHHHH------------------------------------------------H
T ss_pred hhcccchhhccchhhhhhhhccCcHHHHhhc------------------------------------------------c
Confidence 1244444443221 12244433210 0
Q ss_pred cHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEE
Q 008771 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (554)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIi 311 (554)
....++.++++.+|+. ...++++.+|||||||||+|||||+.+|++||||||||+||+.++.++.++|++ .|+|||+
T Consensus 114 ~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~ 192 (538)
T 3ozx_A 114 DERGKKDEVKELLNMT-NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIV 192 (538)
T ss_dssp CCSSCHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred hhHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 0112456778888985 567899999999999999999999999999999999999999999998887653 3899999
Q ss_pred EecCHHHHHhhcceEEEeeCCeee--eccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHH
Q 008771 312 ISHDRAFLDQLCTKIVETEMGVSR--TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAE 389 (554)
Q Consensus 312 isHd~~~l~~~~d~i~~l~~g~~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (554)
||||++++..+||+|++|++|... .+...+..- . . ..+.+.........
T Consensus 193 vsHdl~~~~~~~d~i~vl~~~~~~~g~~~~~~~~~----~-----~-------------~~~~~~g~~~~~~~------- 243 (538)
T 3ozx_A 193 VDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAAR----V-----G-------------INNFLKGYLPAENM------- 243 (538)
T ss_dssp ECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH----H-----H-------------HHHHHHTEETTTTE-------
T ss_pred EEeChHHHHhhCCEEEEecCCcccccccchhhhHH----H-----H-------------HHHHHhhhchhhhh-------
Confidence 999999999999999999865321 122222200 0 0 00001000000000
Q ss_pred HHHHHHHHhhhhccccccccceeecc--C---CCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHH
Q 008771 390 KKLERLQEEEQIEKPFQRKQMKIRFP--E---RGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKS 464 (554)
Q Consensus 390 ~~~~~l~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKS 464 (554)
..++. ...+... . ....++++++++++++.|++. .|..+||+|++||++||+||||||||
T Consensus 244 -----------~~r~~---~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKS 308 (538)
T 3ozx_A 244 -----------KIRPD---EIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKT 308 (538)
T ss_dssp -----------ECSSS---CCCCSCC----------CCEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHH
T ss_pred -----------hccch---hhhccccccccccccccccceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHH
Confidence 00000 0000000 0 012356789999999999874 57788999999999999999999999
Q ss_pred HHHHHHhCCCCCCceEEEECCceeeEEEEecccccCCCCCCCHHHHHHhhccc---CCHHHHHHHHhhCCCChhhhcccc
Q 008771 465 TLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED---WRIDDIKGLLGRCNFKADMLDRKV 541 (554)
Q Consensus 465 TLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~ 541 (554)
||+++|+|+++|++|+|.+++. .++|++|+.. ..+..||.+++...... .....+..+++.+++. +..++++
T Consensus 309 TLl~~l~Gl~~p~~G~i~~~~~--~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~ 383 (538)
T 3ozx_A 309 TFARILVGEITADEGSVTPEKQ--ILSYKPQRIF--PNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH-RLLESNV 383 (538)
T ss_dssp HHHHHHTTSSCCSBCCEESSCC--CEEEECSSCC--CCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGG-GCTTSBG
T ss_pred HHHHHHhCCCCCCCcEEEECCe--eeEeechhcc--cccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCH-HHhcCCh
Confidence 9999999999999999998764 4689999753 34678999998764321 1234578899999995 5789999
Q ss_pred CcCChhhhhcccC
Q 008771 542 SLLSGGEKIILLY 554 (554)
Q Consensus 542 ~~LSGGek~Rl~l 554 (554)
..|||||||||+|
T Consensus 384 ~~LSGGq~QRv~i 396 (538)
T 3ozx_A 384 NDLSGGELQKLYI 396 (538)
T ss_dssp GGCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHH
Confidence 9999999999975
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-54 Score=477.54 Aligned_cols=379 Identities=21% Similarity=0.311 Sum_probs=241.5
Q ss_pred eEEEEeCCe-eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-eEEEEecccccccCccHH
Q 008771 102 NISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-KIAFLSQEFEVSMSRTVR 179 (554)
Q Consensus 102 ~ls~~y~~~-~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-~i~~v~Q~~~~~~~~tv~ 179 (554)
|++++|+.. ..|++++ ++++||++||+||||||||||+|+|+|+++|++|+|....... .+++ +....+.
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~-------~~g~~~~ 153 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKY-------FRGSELQ 153 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHH-------TTTSTHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhhe-------ecChhhh
Confidence 568889754 4677777 6899999999999999999999999999999999873110000 0000 0000010
Q ss_pred HHHHHhhHHHHHH---HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCC
Q 008771 180 EEFMSAFKEEMEI---AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (554)
Q Consensus 180 e~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (554)
..+.......... ......+.. ............+ . ........++.++++.+|+. ...+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~l-------~----~~~~~~~~~~~~~l~~~gl~-~~~~~~ 218 (608)
T 3j16_B 154 NYFTKMLEDDIKAIIKPQYVDNIPR---AIKGPVQKVGELL-------K----LRMEKSPEDVKRYIKILQLE-NVLKRD 218 (608)
T ss_dssp HHHHHHHHTSCCCEEECCCTTTHHH---HCSSSSSHHHHHH-------H----HHCCSCHHHHHHHHHHHTCT-GGGGSC
T ss_pred hhhhHHHHHhhhhhhchhhhhhhhh---hhcchhhHHHHHH-------h----hhhhhHHHHHHHHHHHcCCc-chhCCC
Confidence 0000000000000 000000000 0000000000000 0 00122346788899999996 567999
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 257 ~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
+.+|||||||||+||+||+.+|++|||||||++||+.++.++.++++ +.|.|||+||||++++..+||+|++|++|.
T Consensus 219 ~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 219 IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp TTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred hHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999999999999999999999999988888764 458999999999999999999999998764
Q ss_pred ee--eccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhhccccccccce
Q 008771 334 SR--TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMK 411 (554)
Q Consensus 334 ~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 411 (554)
.. .+..+++. ++ . .......... .+.. .+......
T Consensus 299 ~~~~~~~~~~~~----~~-----~-------------~~~~~~~~~~------------------~~~~---~~~~~~~~ 335 (608)
T 3j16_B 299 SVYGVVTLPASV----RE-----G-------------INIFLDGHIP------------------AENL---RFRTEALQ 335 (608)
T ss_dssp TTEEEECCCEEH----HH-----H-------------HHHHHHTEET------------------TTTE---ECSSSCCC
T ss_pred cccceecCchhH----HH-----H-------------HHHhhccccc------------------hhhh---cccccccc
Confidence 21 11111110 00 0 0000000000 0000 00000001
Q ss_pred eeccCCCCCCCceEEEeeeeEecCC-ccceeceEEEEecC-----CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008771 412 IRFPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERG-----EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (554)
Q Consensus 412 ~~~~~~~~~~~~~l~~~~l~~~y~~-~~~l~~vs~~i~~G-----e~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~ 485 (554)
+.... ......+...++++.|++ ..+++++||++.+| |++||+||||||||||+++|+|+++|++|+.. .
T Consensus 336 ~~~~~--~~~~~~~~~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~-~- 411 (608)
T 3j16_B 336 FRIAD--ATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI-P- 411 (608)
T ss_dssp CCCSS--SSCCCCCCSSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC-C-
T ss_pred ccccc--cccceeeeccceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc-c-
Confidence 11100 011112222567788875 34789999999999 88999999999999999999999999999742 2
Q ss_pred ceeeEEEEecccccCCCCCCCHHHHHHhhccc--CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 486 HNVLPNYFEQNQAEALDLDKTVLETVAEAAED--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 486 ~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
...++|++|+.. ..+..||.+++...... .....+..++..+++. +..++++.+|||||||||+|
T Consensus 412 -~~~i~~~~q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGqkQRv~i 478 (608)
T 3j16_B 412 -KLNVSMKPQKIA--PKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID-DIIDQEVQHLSGGELQRVAI 478 (608)
T ss_dssp -SCCEEEECSSCC--CCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST-TTSSSBSSSCCHHHHHHHHH
T ss_pred -CCcEEEeccccc--ccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHH
Confidence 335789999753 34567999987643221 2345677889999996 57899999999999999975
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-52 Score=470.74 Aligned_cols=275 Identities=19% Similarity=0.294 Sum_probs=172.4
Q ss_pred CeeeEEceeEEEECCCEEEEECCCCccHHHHH---------------------HHHHCCCCCCcee-------EEEcCCC
Q 008771 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQL---------------------RIIAGQEEPDSGN-------VIKAKSN 160 (554)
Q Consensus 109 ~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLl---------------------k~i~G~~~p~~G~-------I~~~~~~ 160 (554)
...+|+||||+|++||++|||||||||||||+ +++.|+..|+.|. |.+++..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45689999999999999999999999999998 9999999998554 4444322
Q ss_pred ------ceEEEEecccccc-------------------cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHH
Q 008771 161 ------MKIAFLSQEFEVS-------------------MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215 (554)
Q Consensus 161 ------~~i~~v~Q~~~~~-------------------~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (554)
..++|++|.+.++ +.+||.+|+...... ...
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~--~~~---------------------- 165 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGL--ELT---------------------- 165 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC-------------------------------------
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhcc--ccc----------------------
Confidence 2355555544321 234555554321000 000
Q ss_pred HHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCC--eEeecCCCCCCCHH
Q 008771 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLD 293 (554)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~--lLlLDEPt~~LD~~ 293 (554)
.. ..........++..+ ..+++.+||.....++++.+|||||||||+|||||+.+|+ +|||||||++||+.
T Consensus 166 ---~~---~~~~~~~~~~~~~~~-~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~ 238 (670)
T 3ux8_A 166 ---EK---EAQIARLILREIRDR-LGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQR 238 (670)
T ss_dssp -------------------CHHH-HHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGG
T ss_pred ---hh---hhHHHHHHHHHHHHH-HHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHH
Confidence 00 000000000111122 2468889997656789999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHHc---cCCCeEEEEecCHHHHHhhcceEEEe------eCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008771 294 TIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQR 364 (554)
Q Consensus 294 ~~~~l~~~l~---~~g~tvIiisHd~~~l~~~~d~i~~l------~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (554)
++.+|.++|+ +.|.|||+||||++++. .||+|++| ++|++ .+.|++.++.......
T Consensus 239 ~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~ii~l~~g~~~~~G~i-~~~g~~~~~~~~~~~~------------- 303 (670)
T 3ux8_A 239 DNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEV-VAAGTPEEVMNDPNSL------------- 303 (670)
T ss_dssp GHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEEEEECSSSGGGCCSE-EEEECHHHHHTCTTCH-------------
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEEEEecccccccCCEE-EEecCHHHHhcCchhH-------------
Confidence 9999988764 46899999999999886 59999999 77776 5667766543210000
Q ss_pred HHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhhhccccccccceeeccC-CCCCCCceEEEeeeeEecCCccceece
Q 008771 365 EIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPE-RGRSGRSVVTIKNLEFGYEDRLLFNRA 443 (554)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~y~~~~~l~~v 443 (554)
... .+. .... ...+. ........+++.+.. ..++++|
T Consensus 304 --------~~~------------------~~~-----~~~~------~~~~~~~~~~~~~~~~~~~~~-----~~~L~~v 341 (670)
T 3ux8_A 304 --------TGQ------------------YLS-----GKKF------IPIPAERRRPDGRWLEVVGAR-----EHNLKNV 341 (670)
T ss_dssp --------HHH------------------HHT-----TSSC------CCCCSSCCCCCSCEEEEEEEC-----STTCCSE
T ss_pred --------HHH------------------Hhc-----cccc------cccccccccccccceeecCcc-----ccccccc
Confidence 000 000 0000 00000 011223455555543 3579999
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008771 444 NLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 444 s~~i~~Ge~iaIvG~NGsGKSTLlk~L~ 471 (554)
||+|.+||++||+||||||||||+++|+
T Consensus 342 sl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 342 SVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred eeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 9999999999999999999999998754
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-49 Score=407.53 Aligned_cols=212 Identities=25% Similarity=0.420 Sum_probs=182.7
Q ss_pred CCCccEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------
Q 008771 93 SISSGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------- 160 (554)
Q Consensus 93 ~~~~~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------- 160 (554)
..+++|+++||+|+|++ ..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+
T Consensus 20 ~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 20 DDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp ---CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred CCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 34568999999999963 469999999999999999999999999999999999999999999999853
Q ss_pred -----ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccH
Q 008771 161 -----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (554)
Q Consensus 161 -----~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (554)
..||||||++.+++.+||.+|+..+... ......+.
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~---------------------------------------~~~~~~~~ 140 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---------------------------------------DNTPKDEV 140 (366)
T ss_dssp HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH---------------------------------------SCCCHHHH
T ss_pred HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh---------------------------------------cCCCHHHH
Confidence 2599999999999999999998643110 01122345
Q ss_pred HHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEE
Q 008771 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVI 311 (554)
Q Consensus 236 ~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIi 311 (554)
.+++.++|+.+||. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+...+.++|+ +.|.|||+
T Consensus 141 ~~~v~~lL~~vgL~-~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~ 219 (366)
T 3tui_C 141 KRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL 219 (366)
T ss_dssp HHHHHHHHHHHTCG-GGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 67788999999996 56799999999999999999999999999999999999999999999888774 35899999
Q ss_pred EecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 312 isHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
||||++++.++||||++|++|++ ...|+..+..
T Consensus 220 vTHdl~~~~~~aDrv~vl~~G~i-v~~g~~~ev~ 252 (366)
T 3tui_C 220 ITHEMDVVKRICDCVAVISNGEL-IEQDTVSEVF 252 (366)
T ss_dssp EESCHHHHHHHCSEEEEEETTEE-EECCBHHHHH
T ss_pred EecCHHHHHHhCCEEEEEECCEE-EEEcCHHHHH
Confidence 99999999999999999999998 4667766554
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-49 Score=408.65 Aligned_cols=209 Identities=26% Similarity=0.385 Sum_probs=182.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc------------eE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------KI 163 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------------~i 163 (554)
++|+++||+|+|++..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .|
T Consensus 3 ~~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred cEEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 369999999999999999999999999999999999999999999999999999999999987532 59
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
|||||++.+++.+||.||+..+... ......+..+++.+++
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~---------------------------------------~~~~~~~~~~~v~~~l 123 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGN---------------------------------------GKGRTAQERQRIEAML 123 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTT---------------------------------------SSCCSHHHHHHHHHHH
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHH---------------------------------------cCCChHHHHHHHHHHH
Confidence 9999999999999999998754210 0112234456788999
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHH
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFL 319 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l----~~~g~tvIiisHd~~~l 319 (554)
+.+||. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.+ ++.|.|+|+||||++++
T Consensus 124 ~~~gL~-~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea 202 (359)
T 3fvq_A 124 ELTGIS-ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEA 202 (359)
T ss_dssp HHHTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH
T ss_pred HHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 999996 5789999999999999999999999999999999999999999988876543 45799999999999999
Q ss_pred HhhcceEEEeeCCeeeeccCChhHHH
Q 008771 320 DQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
..+||||++|++|++ ...|+..+..
T Consensus 203 ~~~aDri~vl~~G~i-~~~g~~~el~ 227 (359)
T 3fvq_A 203 LQYADRIAVMKQGRI-LQTASPHELY 227 (359)
T ss_dssp HHHCSEEEEEETTEE-EEEECHHHHH
T ss_pred HHHCCEEEEEECCEE-EEEeCHHHHH
Confidence 999999999999998 4567766544
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-48 Score=389.48 Aligned_cols=211 Identities=24% Similarity=0.408 Sum_probs=180.6
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc------------e
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------K 162 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------------~ 162 (554)
.++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .
T Consensus 22 ~~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 22 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred hheEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 3479999999999988999999999999999999999999999999999999999999999988432 4
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
|+||||++.+++.+||.||+...... . .........+++.++
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~--------------~------------------------~~~~~~~~~~~~~~~ 143 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMK--------------V------------------------RKWPREKAEAKAMEL 143 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHH--------------T------------------------SCCCHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHH--------------H------------------------cCCCHHHHHHHHHHH
Confidence 99999999888889999998532100 0 001112234567888
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l 319 (554)
++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||++++
T Consensus 144 l~~~~L~-~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 222 (263)
T 2olj_A 144 LDKVGLK-DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFA 222 (263)
T ss_dssp HHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HHHCCCc-hHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH
Confidence 9999995 567899999999999999999999999999999999999999999998887743 489999999999999
Q ss_pred HhhcceEEEeeCCeeeeccCChhHHH
Q 008771 320 DQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
..+||+|++|++|++. +.|+.+++.
T Consensus 223 ~~~~d~v~~l~~G~i~-~~g~~~~~~ 247 (263)
T 2olj_A 223 REVGDRVLFMDGGYII-EEGKPEDLF 247 (263)
T ss_dssp HHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHhCCEEEEEECCEEE-EECCHHHHH
Confidence 9999999999999974 567766554
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=406.62 Aligned_cols=208 Identities=26% Similarity=0.413 Sum_probs=182.6
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (554)
.|+++||+|+|++..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..||||||
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 5899999999999999999999999999999999999999999999999999999999998853 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++.+||.||+..+... ......+..+++.++++.+|+
T Consensus 83 ~~~l~p~ltV~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~l~~~~L 123 (381)
T 3rlf_A 83 SYALYPHLSVAENMSFGLKL---------------------------------------AGAKKEVINQRVNQVAEVLQL 123 (381)
T ss_dssp TCCCCTTSCHHHHHTHHHHH---------------------------------------TTCCHHHHHHHHHHHHHHTTC
T ss_pred CCcCCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999998643210 012233456788999999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d 324 (554)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +.|.|+|+||||++++..+||
T Consensus 124 ~-~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aD 202 (381)
T 3rlf_A 124 A-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD 202 (381)
T ss_dssp G-GGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCS
T ss_pred c-hhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCC
Confidence 6 57799999999999999999999999999999999999999999988887764 349999999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHHH
Q 008771 325 KIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~~ 345 (554)
||++|++|++. ..|+..+..
T Consensus 203 ri~vl~~G~i~-~~g~~~~l~ 222 (381)
T 3rlf_A 203 KIVVLDAGRVA-QVGKPLELY 222 (381)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EEeCHHHHH
Confidence 99999999984 556665543
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-48 Score=392.95 Aligned_cols=210 Identities=22% Similarity=0.380 Sum_probs=180.4
Q ss_pred ccEEEEeEEEEeCC-eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc------------e
Q 008771 96 SGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------K 162 (554)
Q Consensus 96 ~~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------------~ 162 (554)
++|+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. .
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 46999999999975 4699999999999999999999999999999999999999999999998543 5
Q ss_pred EEEEecccc-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 163 IAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 163 i~~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
||||||++. .++..||.+|+..... . ......+..+++.+
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~-----------------~----------------------~~~~~~~~~~~~~~ 126 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAV-----------------N----------------------MKLPEDEIRKRVDN 126 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHH-----------------T----------------------SCCCHHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHH-----------------H----------------------cCCCHHHHHHHHHH
Confidence 999999984 4457899999864210 0 01122344567888
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~ 317 (554)
+++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+ +.|.|||+||||++
T Consensus 127 ~l~~~~L~-~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 127 ALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205 (275)
T ss_dssp HHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS
T ss_pred HHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 99999995 56799999999999999999999999999999999999999999998888764 34899999999999
Q ss_pred HHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
++..+||+|++|++|++ .+.|+..++..
T Consensus 206 ~~~~~~drv~~l~~G~i-~~~g~~~~~~~ 233 (275)
T 3gfo_A 206 IVPLYCDNVFVMKEGRV-ILQGNPKEVFA 233 (275)
T ss_dssp SGGGGCSEEEEEETTEE-EEEECHHHHTH
T ss_pred HHHHhCCEEEEEECCEE-EEECCHHHHhc
Confidence 99999999999999997 56788777654
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-48 Score=380.34 Aligned_cols=199 Identities=28% Similarity=0.405 Sum_probs=172.9
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------c
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------M 161 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~ 161 (554)
++|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 46999999999998899999999999999999999999999999999999999999999998743 2
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
.|+|+||++.+++..||.||+...... .........+++.+
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~ 123 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLK---------------------------------------MGKPKKEAKERGEY 123 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHH---------------------------------------cCCCHHHHHHHHHH
Confidence 499999999888889999998532100 00111123456788
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~ 318 (554)
+++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+++++ .|.|||+||||+++
T Consensus 124 ~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 202 (224)
T 2pcj_A 124 LLSELGLG-DKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL 202 (224)
T ss_dssp HHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 89999996 467899999999999999999999999999999999999999999998887643 48999999999999
Q ss_pred HHhhcceEEEeeCCeee
Q 008771 319 LDQLCTKIVETEMGVSR 335 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~ 335 (554)
+ .+||+|++|++|++.
T Consensus 203 ~-~~~d~v~~l~~G~i~ 218 (224)
T 2pcj_A 203 A-ELTHRTLEMKDGKVV 218 (224)
T ss_dssp H-TTSSEEEEEETTEEE
T ss_pred H-HhCCEEEEEECCEEE
Confidence 8 799999999999874
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-48 Score=388.53 Aligned_cols=209 Identities=26% Similarity=0.452 Sum_probs=179.5
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------------- 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~--------------- 161 (554)
+|+++||+++|+++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 85 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 85 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccCh
Confidence 69999999999988999999999999999999999999999999999999999999999987432
Q ss_pred --------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcc
Q 008771 162 --------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (554)
Q Consensus 162 --------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (554)
.||||||++.+++.+||.+|+...... . ......
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~--------------~------------------------~~~~~~ 127 (262)
T 1b0u_A 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ--------------V------------------------LGLSKH 127 (262)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH--------------T------------------------TCCCHH
T ss_pred hhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHH--------------h------------------------cCCCHH
Confidence 399999999888889999998532100 0 001112
Q ss_pred cHHHHHHHHhhhcCCCccc-cCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeE
Q 008771 234 TLDAKVSKLMPELGFTADD-GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPM 309 (554)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~-~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tv 309 (554)
...+++.++++.+|+. +. .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.||
T Consensus 128 ~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tv 206 (262)
T 1b0u_A 128 DARERALKYLAKVGID-ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 206 (262)
T ss_dssp HHHHHHHHHHHHTTCC-HHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHcCCC-chhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 2345678899999996 45 7899999999999999999999999999999999999999999998887643 48999
Q ss_pred EEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 310 IiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
|+||||++++..+||+|++|++|++. ..|+..++.
T Consensus 207 i~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 241 (262)
T 1b0u_A 207 VVVTHEMGFARHVSSHVIFLHQGKIE-EEGDPEQVF 241 (262)
T ss_dssp EEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 99999999999999999999999974 567776654
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-48 Score=383.15 Aligned_cols=202 Identities=27% Similarity=0.373 Sum_probs=171.7
Q ss_pred cEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------
Q 008771 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------- 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------- 161 (554)
+|+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 4899999999963 4699999999999999999999999999999999999999999999998431
Q ss_pred ---eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 162 ---~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
.||||||++.+++.+||.||+..+... ... ......+..++
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~---------------~~~---------------------~~~~~~~~~~~ 124 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIF---------------KYR---------------------GAMSGEERRKR 124 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHT---------------CSS---------------------SCCCHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHh---------------hhc---------------------cCCCHHHHHHH
Confidence 499999999998899999998643100 000 00112233456
Q ss_pred HHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEec
Q 008771 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISH 314 (554)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisH 314 (554)
+.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+++++ .|.|||+|||
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtH 204 (235)
T 3tif_A 125 ALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204 (235)
T ss_dssp HHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS
T ss_pred HHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 788899999975455899999999999999999999999999999999999999999999888753 3899999999
Q ss_pred CHHHHHhhcceEEEeeCCeee
Q 008771 315 DRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~ 335 (554)
|++.+ .+||+|++|++|++.
T Consensus 205 d~~~~-~~~d~i~~l~~G~i~ 224 (235)
T 3tif_A 205 DINVA-RFGERIIYLKDGEVE 224 (235)
T ss_dssp CHHHH-TTSSEEEEEETTEEE
T ss_pred CHHHH-HhCCEEEEEECCEEE
Confidence 99965 789999999999974
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-48 Score=383.03 Aligned_cols=210 Identities=26% Similarity=0.384 Sum_probs=179.7
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------eEEE
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAF 165 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------~i~~ 165 (554)
.++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .|||
T Consensus 13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~ 92 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92 (256)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE
Confidence 3569999999999988999999999999999999999999999999999999999999999988532 4999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
+||++.+++..||.||+..... + .........+++.++++.
T Consensus 93 v~q~~~l~~~ltv~enl~~~~~---------------~------------------------~~~~~~~~~~~~~~~l~~ 133 (256)
T 1vpl_A 93 LPEEAGAYRNMQGIEYLRFVAG---------------F------------------------YASSSSEIEEMVERATEI 133 (256)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHH---------------H------------------------HCCCHHHHHHHHHHHHHH
T ss_pred EcCCCCCCCCCcHHHHHHHHHH---------------H------------------------cCCChHHHHHHHHHHHHH
Confidence 9999988888999999853210 0 001111234567788999
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~ 322 (554)
+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||++++..+
T Consensus 134 ~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 212 (256)
T 1vpl_A 134 AGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFL 212 (256)
T ss_dssp HCCG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTT
T ss_pred CCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Confidence 9996 467889999999999999999999999999999999999999999998887743 589999999999999999
Q ss_pred cceEEEeeCCeeeeccCChhHHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
||+|++|++|++. +.|+..++.
T Consensus 213 ~d~v~~l~~G~i~-~~g~~~~~~ 234 (256)
T 1vpl_A 213 CDRIALIHNGTIV-ETGTVEELK 234 (256)
T ss_dssp CSEEEEEETTEEE-EEEEHHHHH
T ss_pred CCEEEEEECCEEE-EecCHHHHH
Confidence 9999999999974 567666543
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-48 Score=385.20 Aligned_cols=206 Identities=23% Similarity=0.307 Sum_probs=180.1
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~ 165 (554)
++|+++||++.|+++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. .++|
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEE
Confidence 469999999999999999999999999999999999999999999999999999999999998542 4999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|++.+++..||.||+..... ........+++.++++.
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~-----------------------------------------~~~~~~~~~~~~~~l~~ 128 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRA-----------------------------------------PYGGSQDRQALQQVMAQ 128 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGT-----------------------------------------TSCSTTHHHHHHHHHHH
T ss_pred EecCCccCCCCCHHHHHHhhhh-----------------------------------------hcCcHHHHHHHHHHHHH
Confidence 9999988888999999864310 00122345678888999
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHcc------CCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQ------DPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~------~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd 315 (554)
+|+. ...++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.++|++ .+.|||+||||
T Consensus 129 ~~l~-~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd 207 (266)
T 4g1u_C 129 TDCL-ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD 207 (266)
T ss_dssp TTCS-TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC
T ss_pred cCCh-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 9996 46789999999999999999999999 9999999999999999999998887753 35799999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
++++..+||+|++|++|++. +.|+..++
T Consensus 208 l~~~~~~~d~v~vl~~G~i~-~~g~~~~~ 235 (266)
T 4g1u_C 208 LNLAALYADRIMLLAQGKLV-ACGTPEEV 235 (266)
T ss_dssp HHHHHHHCSEEEEEETTEEE-EEECHHHH
T ss_pred HHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 99999999999999999984 56776554
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-48 Score=387.06 Aligned_cols=217 Identities=20% Similarity=0.246 Sum_probs=179.5
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------eEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-----------~i~ 164 (554)
++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .|+
T Consensus 6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (257)
T 1g6h_A 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 469999999999998999999999999999999999999999999999999999999999987431 499
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHh---CCcccHHHHHHH
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA---VNLDTLDAKVSK 241 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 241 (554)
||||++.+++..||.||+...... .... ... ..+.. ........++.+
T Consensus 86 ~v~q~~~l~~~~tv~enl~~~~~~-----------------~~~~--~~~----------~~~~~~~~~~~~~~~~~~~~ 136 (257)
T 1g6h_A 86 RTFQTPQPLKEMTVLENLLIGEIC-----------------PGES--PLN----------SLFYKKWIPKEEEMVEKAFK 136 (257)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTS-----------------TTSC--HHH----------HHHHCSSCCCCHHHHHHHHH
T ss_pred EEccCCccCCCCcHHHHHHHHHhh-----------------hccC--ccc----------ccccccccCCHHHHHHHHHH
Confidence 999999888889999998643100 0000 000 00000 011223456888
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~ 318 (554)
+++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||+++
T Consensus 137 ~l~~~~l~-~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 215 (257)
T 1g6h_A 137 ILEFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI 215 (257)
T ss_dssp HHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST
T ss_pred HHHHcCCc-hhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 99999996 567899999999999999999999999999999999999999999999888743 48999999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~ 343 (554)
+..+||+|++|++|++. +.|+..+
T Consensus 216 ~~~~~d~v~~l~~G~i~-~~g~~~~ 239 (257)
T 1g6h_A 216 VLNYIDHLYVMFNGQII-AEGRGEE 239 (257)
T ss_dssp TGGGCSEEEEEETTEEE-EEEESHH
T ss_pred HHHhCCEEEEEECCEEE-EEeCHHH
Confidence 99999999999999974 4566655
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-48 Score=379.70 Aligned_cols=207 Identities=22% Similarity=0.324 Sum_probs=176.6
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------eEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-----------~i~ 164 (554)
++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .|+
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 84 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred ceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence 469999999999988999999999999999999999999999999999999999999999988432 399
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|+||++.+++.+||.||+..... . ........+++.++++
T Consensus 85 ~v~q~~~l~~~ltv~enl~~~~~-----------------~-----------------------~~~~~~~~~~~~~~l~ 124 (240)
T 1ji0_A 85 LVPEGRRIFPELTVYENLMMGAY-----------------N-----------------------RKDKEGIKRDLEWIFS 124 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGT-----------------T-----------------------CCCSSHHHHHHHHHHH
T ss_pred EEecCCccCCCCcHHHHHHHhhh-----------------c-----------------------CCCHHHHHHHHHHHHH
Confidence 99999988888999999864210 0 0011223445667777
Q ss_pred hcC-CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHH
Q 008771 245 ELG-FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (554)
Q Consensus 245 ~lg-l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~ 320 (554)
.++ +. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||++++.
T Consensus 125 ~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~ 203 (240)
T 1ji0_A 125 LFPRLK-ERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGAL 203 (240)
T ss_dssp HCHHHH-TTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHH
T ss_pred HcccHh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 774 74 456888999999999999999999999999999999999999999999888743 5899999999999999
Q ss_pred hhcceEEEeeCCeeeeccCChhHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
.+||+|++|++|++. +.|+..++
T Consensus 204 ~~~d~v~~l~~G~i~-~~g~~~~~ 226 (240)
T 1ji0_A 204 KVAHYGYVLETGQIV-LEGKASEL 226 (240)
T ss_dssp HHCSEEEEEETTEEE-EEEEHHHH
T ss_pred HhCCEEEEEECCEEE-EEcCHHHH
Confidence 999999999999974 55666554
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-47 Score=397.35 Aligned_cols=210 Identities=27% Similarity=0.450 Sum_probs=182.3
Q ss_pred CccEEEEeEEEEe-CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEE
Q 008771 95 SSGVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAF 165 (554)
Q Consensus 95 ~~~i~~~~ls~~y-~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~ 165 (554)
+++|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..|||
T Consensus 12 ~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 91 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGL 91 (355)
T ss_dssp CEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEE
T ss_pred CceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEE
Confidence 4579999999999 88889999999999999999999999999999999999999999999998843 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
|||++.+++.+||.||+..+... ......+.++++.++++.
T Consensus 92 v~Q~~~l~~~ltv~eni~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~~ 132 (355)
T 1z47_A 92 VFQNYALFQHMTVYDNVSFGLRE---------------------------------------KRVPKDEMDARVRELLRF 132 (355)
T ss_dssp ECGGGCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHH
Confidence 99999999999999998643210 011222345678889999
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~ 321 (554)
+||. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||++++..
T Consensus 133 ~gL~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~ 211 (355)
T 1z47_A 133 MRLE-SYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALE 211 (355)
T ss_dssp TTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred cCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence 9996 567999999999999999999999999999999999999999999988887643 48999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+||+|++|++|++. ..|+..++.
T Consensus 212 ~adri~vl~~G~i~-~~g~~~~l~ 234 (355)
T 1z47_A 212 VADRVLVLHEGNVE-QFGTPEEVY 234 (355)
T ss_dssp HCSEEEEEETTEEE-EEECHHHHH
T ss_pred hCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999974 557766543
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=396.69 Aligned_cols=208 Identities=26% Similarity=0.377 Sum_probs=181.3
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (554)
+|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..||||||
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 5899999999998889999999999999999999999999999999999999999999998843 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++.+||.||+..+... ......+..+++.++++.+||
T Consensus 83 ~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~l~~~~L 123 (362)
T 2it1_A 83 NWALYPHMTVYKNIAFPLEL---------------------------------------RKAPREEIDKKVREVAKMLHI 123 (362)
T ss_dssp TCCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999998643210 011222345678889999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d 324 (554)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||++++..+||
T Consensus 124 ~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad 202 (362)
T 2it1_A 124 D-KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMAD 202 (362)
T ss_dssp T-TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS
T ss_pred c-hHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 6 567999999999999999999999999999999999999999999988887643 48999999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHHH
Q 008771 325 KIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+|++|++|++. ..|+..+..
T Consensus 203 ri~vl~~G~i~-~~g~~~~~~ 222 (362)
T 2it1_A 203 RIAVIREGEIL-QVGTPDEVY 222 (362)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EEcCHHHHH
Confidence 99999999984 557766544
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-47 Score=396.91 Aligned_cols=208 Identities=25% Similarity=0.393 Sum_probs=180.2
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (554)
+|+++||+|+|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..||||||
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 5899999999998899999999999999999999999999999999999999999999998843 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++.+||.||+..+... . .....+..+++.++++.+||
T Consensus 83 ~~~l~~~ltv~eni~~~~~~-------------------~--------------------~~~~~~~~~~v~~~l~~~~L 123 (359)
T 2yyz_A 83 NYALYPHMTVFENIAFPLRA-------------------R--------------------RISKDEVEKRVVEIARKLLI 123 (359)
T ss_dssp SCCCCTTSCHHHHHHGGGSS-------------------S--------------------CSHHHHTTHHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHh-------------------c--------------------CCCHHHHHHHHHHHHHHcCC
Confidence 99999999999998653210 0 00011234568889999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d 324 (554)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||++++..+||
T Consensus 124 ~-~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~ad 202 (359)
T 2yyz_A 124 D-NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMAS 202 (359)
T ss_dssp G-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCS
T ss_pred c-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC
Confidence 6 567999999999999999999999999999999999999999999988887643 48999999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHHH
Q 008771 325 KIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+|++|++|++. ..|+..+..
T Consensus 203 ri~vl~~G~i~-~~g~~~~l~ 222 (359)
T 2yyz_A 203 RIAVFNQGKLV-QYGTPDEVY 222 (359)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EeCCHHHHH
Confidence 99999999974 557766543
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-47 Score=396.09 Aligned_cols=208 Identities=29% Similarity=0.449 Sum_probs=181.0
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------ce
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MK 162 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~~ 162 (554)
+|+++||+++|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 5899999999998899999999999999999999999999999999999999999999998742 24
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
||||||++.+++.+||.+|+..+... ......+..+++.++
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~ 123 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKL---------------------------------------RKVPRQEIDQRVREV 123 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHHH
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHH
Confidence 99999999999999999998643110 011222345678889
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~ 318 (554)
++.+||. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||+++
T Consensus 124 l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 202 (372)
T 1g29_1 124 AELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202 (372)
T ss_dssp HHHHTCG-GGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred HHHCCCc-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 9999996 567999999999999999999999999999999999999999999988887643 48999999999999
Q ss_pred HHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 319 LDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+..+||+|++|++|++. ..|+..+..
T Consensus 203 a~~~adri~vl~~G~i~-~~g~~~~l~ 228 (372)
T 1g29_1 203 AMTMGDRIAVMNRGVLQ-QVGSPDEVY 228 (372)
T ss_dssp HHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHhCCEEEEEeCCEEE-EeCCHHHHH
Confidence 99999999999999974 567766554
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-47 Score=396.52 Aligned_cols=208 Identities=28% Similarity=0.403 Sum_probs=175.7
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (554)
+|+++||+++|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..||||||
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence 5999999999998899999999999999999999999999999999999999999999998843 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++.+||.||+..+... ......+..+++.++++.+||
T Consensus 91 ~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~l~~~~L 131 (372)
T 1v43_A 91 SYAVWPHMTVYENIAFPLKI---------------------------------------KKFPKDEIDKRVRWAAELLQI 131 (372)
T ss_dssp ------CCCHHHHHHTTCC-----------------------------------------CCCHHHHHHHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999998653210 001122345678889999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d 324 (554)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||++++..+||
T Consensus 132 ~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad 210 (372)
T 1v43_A 132 E-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGD 210 (372)
T ss_dssp G-GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS
T ss_pred h-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 6 567999999999999999999999999999999999999999999988887643 48999999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHHH
Q 008771 325 KIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+|++|++|++. ..|+..+..
T Consensus 211 ri~vl~~G~i~-~~g~~~~l~ 230 (372)
T 1v43_A 211 RIAVMNRGQLL-QIGSPTEVY 230 (372)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EeCCHHHHH
Confidence 99999999974 557766544
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-47 Score=395.67 Aligned_cols=208 Identities=25% Similarity=0.385 Sum_probs=180.3
Q ss_pred cEEEEeEEEEeCCee--eEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------c
Q 008771 97 GVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~--~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------~ 161 (554)
+|+++||+|+|++.+ +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 589999999998877 9999999999999999999999999999999999999999999998742 2
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
.||||||++.+++.+||.||+..+... ......+..+++.+
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~ 123 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTN---------------------------------------MKMSKEEIRKRVEE 123 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTT---------------------------------------SSCCHHHHHHHHHH
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHH
Confidence 599999999999999999998643210 00112234567888
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~ 317 (554)
+++.+||. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||++
T Consensus 124 ~l~~~~L~-~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 202 (353)
T 1oxx_K 124 VAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA 202 (353)
T ss_dssp HHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred HHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999996 567999999999999999999999999999999999999999999888887643 4899999999999
Q ss_pred HHHhhcceEEEeeCCeeeeccCChhHHH
Q 008771 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
++..+||+|++|++|++. ..|+..+..
T Consensus 203 ~~~~~adri~vl~~G~i~-~~g~~~~l~ 229 (353)
T 1oxx_K 203 DIFAIADRVGVLVKGKLV-QVGKPEDLY 229 (353)
T ss_dssp HHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 999999999999999974 557766544
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-47 Score=374.99 Aligned_cols=208 Identities=20% Similarity=0.292 Sum_probs=175.3
Q ss_pred ccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccccc
Q 008771 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (554)
Q Consensus 96 ~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (554)
++|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+. ..|+|+||++.+++
T Consensus 3 ~~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~---~~i~~v~q~~~~~~ 79 (253)
T 2nq2_C 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY---QSIGFVPQFFSSPF 79 (253)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC---SCEEEECSCCCCSS
T ss_pred ceEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe---ccEEEEcCCCccCC
Confidence 3699999999998 8889999999999999999999999999999999999999999999853 36999999998888
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccC
Q 008771 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (554)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (554)
..||.||+...... .... .........+++.++++.+|+. +..+
T Consensus 80 ~~tv~enl~~~~~~---------------~~~~--------------------~~~~~~~~~~~~~~~l~~~~l~-~~~~ 123 (253)
T 2nq2_C 80 AYSVLDIVLMGRST---------------HINT--------------------FAKPKSHDYQVAMQALDYLNLT-HLAK 123 (253)
T ss_dssp CCBHHHHHHGGGGG---------------GSCT--------------------TCCCCHHHHHHHHHHHHHTTCG-GGTT
T ss_pred CCCHHHHHHHhhhh---------------hccc--------------------ccCCCHHHHHHHHHHHHHcCCh-HHhc
Confidence 89999998642100 0000 0000112245678889999996 4678
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---C-CCeEEEEecCHHHHHhhcceEEEee
Q 008771 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 255 ~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~-g~tvIiisHd~~~l~~~~d~i~~l~ 330 (554)
+++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ . |.|||+||||++++..+||+|++|+
T Consensus 124 ~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~ 203 (253)
T 2nq2_C 124 REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLN 203 (253)
T ss_dssp SBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 89999999999999999999999999999999999999999999887743 3 8999999999999999999999999
Q ss_pred CCeeeeccCChhHH
Q 008771 331 MGVSRTYEGNYSQY 344 (554)
Q Consensus 331 ~g~~~~~~G~~~~~ 344 (554)
+|+ .+.|+..++
T Consensus 204 ~G~--~~~g~~~~~ 215 (253)
T 2nq2_C 204 KQN--FKFGETRNI 215 (253)
T ss_dssp TTE--EEEEEHHHH
T ss_pred CCe--EecCCHHHH
Confidence 998 456766544
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-47 Score=390.80 Aligned_cols=203 Identities=27% Similarity=0.409 Sum_probs=177.1
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc--------eEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~--------~i~~v~Q 168 (554)
+|+++||+++|+++ +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .||||||
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence 48999999999888 99999999999999999999999999999999999999999999998542 5999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++.+||.||+..+... .... .. +++.++++.+||
T Consensus 80 ~~~l~~~ltv~enl~~~~~~---------------------------------------~~~~--~~-~~v~~~l~~~~L 117 (348)
T 3d31_A 80 NYSLFPHMNVKKNLEFGMRM---------------------------------------KKIK--DP-KRVLDTARDLKI 117 (348)
T ss_dssp TCCCCTTSCHHHHHHHHHHH---------------------------------------HCCC--CH-HHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHH---------------------------------------cCCC--HH-HHHHHHHHHcCC
Confidence 99999999999998643100 0011 11 568888999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d 324 (554)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +.|.|+|+||||++++..+||
T Consensus 118 ~-~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~ad 196 (348)
T 3d31_A 118 E-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMAD 196 (348)
T ss_dssp T-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCS
T ss_pred c-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 56799999999999999999999999999999999999999999998888764 358999999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHH
Q 008771 325 KIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~ 344 (554)
+|++|++|++. ..|+..+.
T Consensus 197 ri~vl~~G~i~-~~g~~~~~ 215 (348)
T 3d31_A 197 RIAVVMDGKLI-QVGKPEEI 215 (348)
T ss_dssp EEEEESSSCEE-EEECHHHH
T ss_pred EEEEEECCEEE-EECCHHHH
Confidence 99999999974 55666544
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-47 Score=383.81 Aligned_cols=214 Identities=25% Similarity=0.374 Sum_probs=177.3
Q ss_pred CCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc------------
Q 008771 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------ 161 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------------ 161 (554)
..++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 18 ~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred CCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 44579999999999988999999999999999999999999999999999999999999999988542
Q ss_pred eEEEEeccccccc--CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 162 KIAFLSQEFEVSM--SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 162 ~i~~v~Q~~~~~~--~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
.|+||||++.+++ ..||.||+..+....... . ........+++
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~--------------------~---------------~~~~~~~~~~~ 142 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGV--------------------Y---------------QDIDDEIRNEA 142 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC--------------------------------------------CCHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhcccc--------------------c---------------cCCcHHHHHHH
Confidence 3999999986544 459999986432100000 0 00011234567
Q ss_pred HHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeE--EEEec
Q 008771 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPM--VIISH 314 (554)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tv--IiisH 314 (554)
.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .|.|| |+|||
T Consensus 143 ~~~l~~~gl~-~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtH 221 (279)
T 2ihy_A 143 HQLLKLVGMS-AKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTH 221 (279)
T ss_dssp HHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEec
Confidence 8889999995 567899999999999999999999999999999999999999999999888753 38899 99999
Q ss_pred CHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|++++..+||+|++|++|++. +.|+..++
T Consensus 222 d~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 250 (279)
T 2ihy_A 222 FIEEITANFSKILLLKDGQSI-QQGAVEDI 250 (279)
T ss_dssp CGGGCCTTCCEEEEEETTEEE-EEEEHHHH
T ss_pred CHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 999999999999999999974 56766544
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-47 Score=373.05 Aligned_cols=203 Identities=27% Similarity=0.358 Sum_probs=174.3
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (554)
+|+++|++++|++ +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..|||+||
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcC
Confidence 3789999999976 49999999999 9999999999999999999999999999999998843 25999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++.+||.||+...... .......+++.++++.+|+
T Consensus 78 ~~~l~~~ltv~enl~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~~l 116 (240)
T 2onk_A 78 DYALFPHLSVYRNIAYGLRN-----------------------------------------VERVERDRRVREMAEKLGI 116 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTT-----------------------------------------SCHHHHHHHHHHHHHTTTC
T ss_pred CCccCCCCcHHHHHHHHHHH-----------------------------------------cCCchHHHHHHHHHHHcCC
Confidence 99888889999998643100 0000113467788999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d 324 (554)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||++++..+||
T Consensus 117 ~-~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d 195 (240)
T 2onk_A 117 A-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD 195 (240)
T ss_dssp T-TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCS
T ss_pred H-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 467899999999999999999999999999999999999999999999888753 38999999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHHH
Q 008771 325 KIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+|++|++|++. +.|+..++.
T Consensus 196 ~i~~l~~G~i~-~~g~~~~~~ 215 (240)
T 2onk_A 196 EVAVMLNGRIV-EKGKLKELF 215 (240)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EECCHHHHH
Confidence 99999999974 567766553
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-47 Score=383.57 Aligned_cols=252 Identities=21% Similarity=0.305 Sum_probs=181.9
Q ss_pred hhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCC
Q 008771 55 EKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNG 133 (554)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NG 133 (554)
|....+.+..+++++++..+.+.+.... ............|+++||+|+|+ +.++|+||||+|++||++|||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sG 90 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDL---PGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSG 90 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCC---TTCBCCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSC
T ss_pred cchhHHHHHHHHHHHHHHHhCCcccccc---ccccccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCC
Confidence 4445666667777776654433221110 00011112235699999999995 5789999999999999999999999
Q ss_pred ccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 008771 134 AGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL 203 (554)
Q Consensus 134 sGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~ 203 (554)
||||||+++|+|+++|++|+|.++|.+. .||||||++.++ ..||+||+..+..... .+.+...+
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf-~~Tv~eNi~~~~~~~~-----~~~~~~~~ 164 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF-NDTIADNIRYGRVTAG-----NDEVEAAA 164 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCC-SEEHHHHHHTTSTTCC-----HHHHHHHH
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccC-cccHHHHHHhhcccCC-----HHHHHHHH
Confidence 9999999999999999999999998642 599999999876 5699999975421000 00000000
Q ss_pred hhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEee
Q 008771 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLL 283 (554)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlL 283 (554)
.. ..+...+..+.. |+. ...++...+|||||||||+|||||+.+|+||||
T Consensus 165 ------------------------~~---~~l~~~i~~lp~--gl~-t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlL 214 (306)
T 3nh6_A 165 ------------------------QA---AGIHDAIMAFPE--GYR-TQVGERGLKLSGGEKQRVAIARTILKAPGIILL 214 (306)
T ss_dssp ------------------------HH---HTCHHHHHHSTT--GGG-CEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred ------------------------HH---hCcHHHHHhccc--hhh-hHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 00 001111111111 332 234566789999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 284 DEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 284 DEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
||||++||+.+...+.+.|++ .++|+|+||||++.+.. ||+|++|++|++ ...|++.+.+..
T Consensus 215 DEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~i-v~~G~~~el~~~ 278 (306)
T 3nh6_A 215 DEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCI-VERGRHEALLSR 278 (306)
T ss_dssp ECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEE-EEEECHHHHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEE-EEECCHHHHHhc
Confidence 999999999999999888754 47899999999999986 999999999998 467888877653
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=376.10 Aligned_cols=208 Identities=26% Similarity=0.360 Sum_probs=176.7
Q ss_pred cEEEEeEEEEeC--C---eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-------eEE
Q 008771 97 GVKLENISKSYK--G---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------KIA 164 (554)
Q Consensus 97 ~i~~~~ls~~y~--~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-------~i~ 164 (554)
+|+++||+++|+ + +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .||
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 589999999997 4 6799999999999999999999999999999999999999999999998542 599
Q ss_pred EEeccc-ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 165 FLSQEF-EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 165 ~v~Q~~-~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
||+|++ ..++..||.||+...... ........+++.+++
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~----------------------------------------~~~~~~~~~~~~~~l 121 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKN----------------------------------------FYPDRDPVPLVKKAM 121 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTT----------------------------------------TCTTSCSHHHHHHHH
T ss_pred EEeccchhhcCCCcHHHHHHHHHHh----------------------------------------cCCHHHHHHHHHHHH
Confidence 999996 456778999998542100 001123345678889
Q ss_pred hhcCCCc-cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHH
Q 008771 244 PELGFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (554)
Q Consensus 244 ~~lgl~~-~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l 319 (554)
+.+|+.. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||++++
T Consensus 122 ~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 122 EFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETV 201 (266)
T ss_dssp HHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTT
T ss_pred HHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 9999962 457899999999999999999999999999999999999999999999887743 489999999999999
Q ss_pred HhhcceEEEeeCCeeeeccCChhHHH
Q 008771 320 DQLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
..+||+|++|++|++. +.|+..+..
T Consensus 202 ~~~~d~v~~l~~G~i~-~~g~~~~~~ 226 (266)
T 2yz2_A 202 INHVDRVVVLEKGKKV-FDGTRMEFL 226 (266)
T ss_dssp GGGCSEEEEEETTEEE-EEEEHHHHH
T ss_pred HHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999874 566655443
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-46 Score=372.11 Aligned_cols=216 Identities=19% Similarity=0.255 Sum_probs=177.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCC--CCCCceeEEEcCCCc-----------e
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSNM-----------K 162 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~--~~p~~G~I~~~~~~~-----------~ 162 (554)
++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.+. .
T Consensus 19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 98 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEG 98 (267)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHT
T ss_pred ceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCC
Confidence 469999999999988999999999999999999999999999999999999 468999999988532 3
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
|+|++|++.+++..||.+|+........ . ... . ......+...++.++
T Consensus 99 i~~v~Q~~~l~~~~tv~e~~~~~~~~~~----------~-~~~-~--------------------~~~~~~~~~~~~~~~ 146 (267)
T 2zu0_C 99 IFMAFQYPVEIPGVSNQFFLQTALNAVR----------S-YRG-Q--------------------ETLDRFDFQDLMEEK 146 (267)
T ss_dssp EEEECSSCCCCTTCBHHHHHHHHHHHHH----------H-GGG-C--------------------CCCCHHHHHHHHHHH
T ss_pred EEEEccCccccccccHHHHHHHHHHhhh----------h-hhc-c--------------------ccCCHHHHHHHHHHH
Confidence 9999999998889999998753210000 0 000 0 000112234568889
Q ss_pred hhhcCCCccccCCCCC-CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 008771 243 MPELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~-~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~ 318 (554)
++.+|+.....++++. +|||||||||+|||||+.+|+||||||||++||+.+++.+.++|++ .|.|||+||||+++
T Consensus 147 l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~ 226 (267)
T 2zu0_C 147 IALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI 226 (267)
T ss_dssp HHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG
T ss_pred HHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH
Confidence 9999996556688887 5999999999999999999999999999999999999999998754 48899999999999
Q ss_pred HHhh-cceEEEeeCCeeeeccCChhHH
Q 008771 319 LDQL-CTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 319 l~~~-~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
+..+ ||+|++|++|++. +.|+..+.
T Consensus 227 ~~~~~~d~v~~l~~G~i~-~~g~~~~~ 252 (267)
T 2zu0_C 227 LDYIKPDYVHVLYQGRIV-KSGDFTLV 252 (267)
T ss_dssp GGTSCCSEEEEEETTEEE-EEECTTHH
T ss_pred HHhhcCCEEEEEECCEEE-EEcCHHHH
Confidence 9886 9999999999984 55666543
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=372.33 Aligned_cols=209 Identities=24% Similarity=0.309 Sum_probs=171.2
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCC--CCCCceeEEEcCCCc-----------eE
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSNM-----------KI 163 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~--~~p~~G~I~~~~~~~-----------~i 163 (554)
+|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.+. .+
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 58999999999988999999999999999999999999999999999999 789999999988532 38
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+|++|++.+++..||.+|+....... ... ........+++.+++
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~--------------~~~----------------------~~~~~~~~~~~~~~l 126 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQAK--------------LGR----------------------EVGVAEFWTKVKKAL 126 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHHH--------------HTS----------------------CCCHHHHHHHHHHHH
T ss_pred EEeccCCccccCCCHHHHHHHHHHhh--------------ccc----------------------cCCHHHHHHHHHHHH
Confidence 99999999888899999985321000 000 001112345677889
Q ss_pred hhcCCCccccCCCCCC-CChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 008771 244 PELGFTADDGDRLVAS-FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~-LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l 319 (554)
+.+|+..+..++++.+ |||||||||+|||||+.+|++|||||||++||+.++..+.++|+ +.|.|||+||||++++
T Consensus 127 ~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~ 206 (250)
T 2d2e_A 127 ELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRIL 206 (250)
T ss_dssp HHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGG
T ss_pred HHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 9999965567899999 99999999999999999999999999999999999999988874 3589999999999999
Q ss_pred Hhh-cceEEEeeCCeeeeccCChh
Q 008771 320 DQL-CTKIVETEMGVSRTYEGNYS 342 (554)
Q Consensus 320 ~~~-~d~i~~l~~g~~~~~~G~~~ 342 (554)
..+ ||+|++|++|++. +.|+..
T Consensus 207 ~~~~~d~v~~l~~G~i~-~~g~~~ 229 (250)
T 2d2e_A 207 NYIQPDKVHVMMDGRVV-ATGGPE 229 (250)
T ss_dssp GTSCCSEEEEEETTEEE-EEESHH
T ss_pred HHhcCCEEEEEECCEEE-EEeCHH
Confidence 888 5999999999974 456654
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=368.08 Aligned_cols=213 Identities=22% Similarity=0.357 Sum_probs=171.4
Q ss_pred CccEEEEeEEEEeCC---eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------
Q 008771 95 SSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------- 161 (554)
..+|+++||+++|++ +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 356999999999976 6899999999999999999999999999999999999999999999998542
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
.|+||||++.+++ .||.||+..+... ......+.. ......+.+
T Consensus 94 ~i~~v~Q~~~l~~-~tv~enl~~~~~~------------------~~~~~~~~~-----------------~~~~~~~~~ 137 (271)
T 2ixe_A 94 QVAAVGQEPLLFG-RSFRENIAYGLTR------------------TPTMEEITA-----------------VAMESGAHD 137 (271)
T ss_dssp HEEEECSSCCCCS-SBHHHHHHTTCSS------------------CCCHHHHHH-----------------HHHHHTCHH
T ss_pred cEEEEecCCcccc-ccHHHHHhhhccc------------------CChHHHHHH-----------------HHHHHhHHH
Confidence 4999999998765 5999998643210 000000000 000112344
Q ss_pred Hhhhc--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 008771 242 LMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (554)
Q Consensus 242 ~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd 315 (554)
+++.+ |+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|++ .|.|||+||||
T Consensus 138 ~l~~l~~gl~-~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd 216 (271)
T 2ixe_A 138 FISGFPQGYD-TEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ 216 (271)
T ss_dssp HHHHSTTGGG-SBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSC
T ss_pred HHHhhhcchh-hhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 55555 554 346788999999999999999999999999999999999999999999988753 37899999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
++++.. ||+|++|++|++. ..|+..++..
T Consensus 217 ~~~~~~-~d~v~~l~~G~i~-~~g~~~~l~~ 245 (271)
T 2ixe_A 217 LSLAER-AHHILFLKEGSVC-EQGTHLQLME 245 (271)
T ss_dssp HHHHTT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred HHHHHh-CCEEEEEECCEEE-EECCHHHHHh
Confidence 999975 9999999999974 5677766543
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=364.53 Aligned_cols=209 Identities=22% Similarity=0.380 Sum_probs=164.1
Q ss_pred cEEEEeEEEEe--CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEE
Q 008771 97 GVKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (554)
Q Consensus 97 ~i~~~~ls~~y--~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~ 164 (554)
.|+++||+|+| +++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .|+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 48999999999 367899999999999999999999999999999999999999999999988532 499
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
||||++.+++ .||.||+...... .+.+.+...++ . ..+.++++
T Consensus 87 ~v~Q~~~l~~-~tv~enl~~~~~~-------------------~~~~~~~~~l~----------~-------~~l~~~~~ 129 (247)
T 2ff7_A 87 VVLQDNVLLN-RSIIDNISLANPG-------------------MSVEKVIYAAK----------L-------AGAHDFIS 129 (247)
T ss_dssp EECSSCCCTT-SBHHHHHTTTCTT-------------------CCHHHHHHHHH----------H-------HTCHHHHH
T ss_pred EEeCCCcccc-ccHHHHHhccCCC-------------------CCHHHHHHHHH----------H-------hChHHHHH
Confidence 9999998765 6999998642100 00000000000 0 00111222
Q ss_pred hc--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHH
Q 008771 245 EL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (554)
Q Consensus 245 ~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~ 320 (554)
.+ |+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||++++.
T Consensus 130 ~~~~gl~-~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 130 ELREGYN-TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK 208 (247)
T ss_dssp TSTTGGG-CBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT
T ss_pred hCcchhh-hhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 22 232 234667889999999999999999999999999999999999999999888754 4899999999999986
Q ss_pred hhcceEEEeeCCeeeeccCChhHHH
Q 008771 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 321 ~~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
.||+|++|++|++. +.|+..+..
T Consensus 209 -~~d~v~~l~~G~i~-~~g~~~~l~ 231 (247)
T 2ff7_A 209 -NADRIIVMEKGKIV-EQGKHKELL 231 (247)
T ss_dssp -TSSEEEEEETTEEE-EEECHHHHH
T ss_pred -hCCEEEEEECCEEE-EECCHHHHH
Confidence 49999999999974 567766554
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-45 Score=366.11 Aligned_cols=199 Identities=23% Similarity=0.304 Sum_probs=171.8
Q ss_pred cEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------ceEE-
Q 008771 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIA- 164 (554)
Q Consensus 97 ~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------~~i~- 164 (554)
+|+++|++++|++ +++|+|+||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|.+ ..|+
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 4899999999987 789999999999 9999999999999999999999999 999999998743 2599
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|+||++.+ ..||.||+..... + . ....+++.++++
T Consensus 79 ~v~Q~~~l--~~tv~enl~~~~~---------------~---------------------------~-~~~~~~~~~~l~ 113 (263)
T 2pjz_A 79 NLPEAYEI--GVTVNDIVYLYEE---------------L---------------------------K-GLDRDLFLEMLK 113 (263)
T ss_dssp CCGGGSCT--TSBHHHHHHHHHH---------------H---------------------------T-CCCHHHHHHHHH
T ss_pred EeCCCCcc--CCcHHHHHHHhhh---------------h---------------------------c-chHHHHHHHHHH
Confidence 99999877 7899999853210 0 0 112345778889
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcc
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d 324 (554)
.+|+..+..++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.+.|++...|||+||||++++..+||
T Consensus 114 ~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d 193 (263)
T 2pjz_A 114 ALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKE 193 (263)
T ss_dssp HTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTT
T ss_pred HcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcC
Confidence 99996346789999999999999999999999999999999999999999999999987653499999999999999999
Q ss_pred -eEEEeeCCeeeeccCChhH
Q 008771 325 -KIVETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 325 -~i~~l~~g~~~~~~G~~~~ 343 (554)
+|++|++|++. +.|+..+
T Consensus 194 ~~i~~l~~G~i~-~~g~~~~ 212 (263)
T 2pjz_A 194 YKAYFLVGNRLQ-GPISVSE 212 (263)
T ss_dssp SEEEEEETTEEE-EEEEHHH
T ss_pred ceEEEEECCEEE-EecCHHH
Confidence 99999999874 5565543
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-46 Score=359.79 Aligned_cols=190 Identities=22% Similarity=0.301 Sum_probs=165.5
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----ceEEEEeccc
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEF 170 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----~~i~~v~Q~~ 170 (554)
..|+++||+++|++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..|+|+||++
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~ 87 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI 87 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCC
Confidence 45999999999988 99999999999999999999999999999999999999999999999854 3699999999
Q ss_pred ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc
Q 008771 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (554)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (554)
.+++..||.||+..... .... ... .+++.++++.+|+..
T Consensus 88 ~~~~~~tv~enl~~~~~---------------------------------------~~~~-~~~-~~~~~~~l~~~gl~~ 126 (214)
T 1sgw_A 88 IVPRKISVEDYLKAVAS---------------------------------------LYGV-KVN-KNEIMDALESVEVLD 126 (214)
T ss_dssp CCCTTSBHHHHHHHHHH---------------------------------------HTTC-CCC-HHHHHHHHHHTTCCC
T ss_pred cCCCCCCHHHHHHHHHH---------------------------------------hcCC-chH-HHHHHHHHHHcCCCc
Confidence 88888899999853210 0001 112 456788899999974
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceEE
Q 008771 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIV 327 (554)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i~ 327 (554)
. ++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||++++..+||+|+
T Consensus 127 -~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~ 204 (214)
T 1sgw_A 127 -L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH 204 (214)
T ss_dssp -T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG
T ss_pred -C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 4 888999999999999999999999999999999999999999988887753 37899999999999999999987
Q ss_pred Ee
Q 008771 328 ET 329 (554)
Q Consensus 328 ~l 329 (554)
.+
T Consensus 205 ~~ 206 (214)
T 1sgw_A 205 KY 206 (214)
T ss_dssp GG
T ss_pred Ee
Confidence 54
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-45 Score=362.80 Aligned_cols=198 Identities=28% Similarity=0.329 Sum_probs=171.2
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~ 165 (554)
.+|+++||+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|.+. .|+|
T Consensus 3 ~~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~ 77 (249)
T 2qi9_C 3 IVMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY 77 (249)
T ss_dssp EEEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred cEEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEE
Confidence 36899999986 6999999999999999999999999999999999999999 9999988542 4999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
+||++.+++..||.||+..... .... ..++.++++.
T Consensus 78 v~q~~~~~~~~tv~e~l~~~~~-------------------------------------------~~~~-~~~~~~~l~~ 113 (249)
T 2qi9_C 78 LSQQQTPPFATPVWHYLTLHQH-------------------------------------------DKTR-TELLNDVAGA 113 (249)
T ss_dssp ECSCCCCCTTCBHHHHHHTTCS-------------------------------------------STTC-HHHHHHHHHH
T ss_pred ECCCCccCCCCcHHHHHHHhhc-------------------------------------------cCCc-HHHHHHHHHH
Confidence 9999988888899999853200 0001 4557778899
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHccCCC-------eEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecC
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD-------LLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHD 315 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~-------lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd 315 (554)
+|+. +..++++.+|||||||||+|||||+.+|+ +|||||||++||+.++..+.+.|++ .|.|||+||||
T Consensus 114 ~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd 192 (249)
T 2qi9_C 114 LALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHD 192 (249)
T ss_dssp TTCG-GGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCCh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 9995 46788999999999999999999999999 9999999999999999999888743 48999999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
++++..+||+|++|++|++. +.|+..++
T Consensus 193 ~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 220 (249)
T 2qi9_C 193 LNHTLRHAHRAWLLKGGKML-ASGRREEV 220 (249)
T ss_dssp HHHHHHHCSEEEEEETTEEE-EEEEHHHH
T ss_pred HHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999974 55665543
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=353.59 Aligned_cols=207 Identities=25% Similarity=0.393 Sum_probs=162.1
Q ss_pred ccEEEEeEEEEeC--CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccc
Q 008771 96 SGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (554)
Q Consensus 96 ~~i~~~~ls~~y~--~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~ 173 (554)
.+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| .|+|+||++.++
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---~i~~v~q~~~~~ 81 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQFSWIM 81 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---CEEEECSSCCCC
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---EEEEEecCCccc
Confidence 4699999999995 47899999999999999999999999999999999999999999999987 599999999886
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC-ccc
Q 008771 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-ADD 252 (554)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~ 252 (554)
+. ||.||+..+.... . .. ....+ +.. .+.+.++.+... ...
T Consensus 82 ~~-tv~enl~~~~~~~-~--~~---~~~~~------------------------~~~-------~l~~~~~~~~~~~~~~ 123 (229)
T 2pze_A 82 PG-TIKENIIFGVSYD-E--YR---YRSVI------------------------KAC-------QLEEDISKFAEKDNIV 123 (229)
T ss_dssp SB-CHHHHHHTTSCCC-H--HH---HHHHH------------------------HHT-------TCHHHHTTSTTGGGSC
T ss_pred CC-CHHHHhhccCCcC-h--HH---HHHHH------------------------HHh-------CcHHHHHhCccccccc
Confidence 64 9999986431100 0 00 00000 000 011122222211 012
Q ss_pred cCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHH-Hcc--CCCeEEEEecCHHHHHhhcceEEEe
Q 008771 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (554)
Q Consensus 253 ~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~~--~g~tvIiisHd~~~l~~~~d~i~~l 329 (554)
.++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+. +++ .+.|||+||||++++. .||+|++|
T Consensus 124 ~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l 202 (229)
T 2pze_A 124 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILIL 202 (229)
T ss_dssp BCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEE
T ss_pred ccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEE
Confidence 3456789999999999999999999999999999999999999999986 333 3789999999999986 59999999
Q ss_pred eCCeeeeccCChhHHH
Q 008771 330 EMGVSRTYEGNYSQYV 345 (554)
Q Consensus 330 ~~g~~~~~~G~~~~~~ 345 (554)
++|++. +.|++.++.
T Consensus 203 ~~G~i~-~~g~~~~~~ 217 (229)
T 2pze_A 203 HEGSSY-FYGTFSELQ 217 (229)
T ss_dssp ETTEEE-EEECHHHHH
T ss_pred ECCEEE-EECCHHHHH
Confidence 999974 567776554
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=363.25 Aligned_cols=203 Identities=21% Similarity=0.346 Sum_probs=164.9
Q ss_pred cEEEEeEEEEe-CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEE
Q 008771 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (554)
Q Consensus 97 ~i~~~~ls~~y-~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~ 165 (554)
+|+++||+|+| +++++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 38999999999 56789999999999999999999999999999999999999999999998742 24999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
+||++.+++ .||.||+...... ...+.++.++++.
T Consensus 81 v~q~~~l~~-~tv~enl~~~~~~--------------------------------------------~~~~~~~~~~l~~ 115 (243)
T 1mv5_A 81 VSQDSAIMA-GTIRENLTYGLEG--------------------------------------------DYTDEDLWQVLDL 115 (243)
T ss_dssp ECCSSCCCC-EEHHHHTTSCTTS--------------------------------------------CSCHHHHHHHHHH
T ss_pred EcCCCcccc-ccHHHHHhhhccC--------------------------------------------CCCHHHHHHHHHH
Confidence 999998765 5999998532100 0001223334444
Q ss_pred cCCCc----------cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 008771 246 LGFTA----------DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (554)
Q Consensus 246 lgl~~----------~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiis 313 (554)
+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||
T Consensus 116 ~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vt 195 (243)
T 1mv5_A 116 AFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIA 195 (243)
T ss_dssp HTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEEC
T ss_pred hChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 44432 123456789999999999999999999999999999999999988887777643 489999999
Q ss_pred cCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||++++. .||+|++|++|++ ...|+..++..
T Consensus 196 H~~~~~~-~~d~v~~l~~G~i-~~~g~~~~~~~ 226 (243)
T 1mv5_A 196 HRLSTIV-DADKIYFIEKGQI-TGSGKHNELVA 226 (243)
T ss_dssp CSHHHHH-HCSEEEEEETTEE-CCCSCHHHHHH
T ss_pred CChHHHH-hCCEEEEEECCEE-EEeCCHHHHHh
Confidence 9999986 5999999999997 46788776543
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=356.15 Aligned_cols=201 Identities=18% Similarity=0.345 Sum_probs=163.5
Q ss_pred cEEEEeEEEEeC--CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccccc
Q 008771 97 GVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (554)
Q Consensus 97 ~i~~~~ls~~y~--~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (554)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| .|+|+||++.+ +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---~i~~v~Q~~~~-~ 78 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---SVAYVPQQAWI-Q 78 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---CEEEECSSCCC-C
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---EEEEEcCCCcC-C
Confidence 589999999997 47899999999999999999999999999999999999999999999987 59999999865 6
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH---HHhhhcCCCc-
Q 008771 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS---KLMPELGFTA- 250 (554)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~lgl~~- 250 (554)
..||.||+...... . .....++. .+++.+++.+
T Consensus 79 ~~tv~enl~~~~~~-------------------~------------------------~~~~~~~~~~~~l~~~~~~~~~ 115 (237)
T 2cbz_A 79 NDSLRENILFGCQL-------------------E------------------------EPYYRSVIQACALLPDLEILPS 115 (237)
T ss_dssp SEEHHHHHHTTSCC-------------------C------------------------TTHHHHHHHHTTCHHHHTTSTT
T ss_pred CcCHHHHhhCcccc-------------------C------------------------HHHHHHHHHHHhhHHHHHhccc
Confidence 78999998642100 0 00000000 1122223211
Q ss_pred ---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---c--CCCeEEEEecCHHHHHhh
Q 008771 251 ---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---K--QDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 251 ---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~--~g~tvIiisHd~~~l~~~ 322 (554)
...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+. + .|.|||+||||++++. .
T Consensus 116 ~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~ 194 (237)
T 2cbz_A 116 GDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-Q 194 (237)
T ss_dssp GGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-G
T ss_pred cccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-h
Confidence 12467889999999999999999999999999999999999999999999883 2 4889999999999985 6
Q ss_pred cceEEEeeCCeeeeccCChhHHHH
Q 008771 323 CTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 323 ~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||+|++|++|++. ..|++.++..
T Consensus 195 ~d~v~~l~~G~i~-~~g~~~~~~~ 217 (237)
T 2cbz_A 195 VDVIIVMSGGKIS-EMGSYQELLA 217 (237)
T ss_dssp SSEEEEEETTEEE-EEECHHHHHH
T ss_pred CCEEEEEeCCEEE-EeCCHHHHhh
Confidence 9999999999974 5677776543
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-44 Score=356.75 Aligned_cols=202 Identities=19% Similarity=0.305 Sum_probs=162.5
Q ss_pred ccEEEEeEEEEeCC---eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------e
Q 008771 96 SGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (554)
Q Consensus 96 ~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~ 162 (554)
++|+++||+++|++ +++|+||||+|++|++++|+||||||||||+|+|+|+++| +|+|.++|.+. .
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 45999999999975 4699999999999999999999999999999999999987 89999988532 4
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
|+||||++.++. .||.+|+..+.... .+.++.++
T Consensus 95 i~~v~Q~~~l~~-~tv~enl~~~~~~~---------------------------------------------~~~~~~~~ 128 (260)
T 2ghi_A 95 IGIVPQDTILFN-ETIKYNILYGKLDA---------------------------------------------TDEEVIKA 128 (260)
T ss_dssp EEEECSSCCCCS-EEHHHHHHTTCTTC---------------------------------------------CHHHHHHH
T ss_pred EEEEcCCCcccc-cCHHHHHhccCCCC---------------------------------------------CHHHHHHH
Confidence 999999998764 69999986421000 00111112
Q ss_pred hhhcCC-------Cc---cccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEE
Q 008771 243 MPELGF-------TA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMV 310 (554)
Q Consensus 243 l~~lgl-------~~---~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvI 310 (554)
++.+++ +. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|++ .+.|||
T Consensus 129 l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tvi 208 (260)
T 2ghi_A 129 TKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLI 208 (260)
T ss_dssp HHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEE
T ss_pred HHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 222221 11 123567889999999999999999999999999999999999999998887753 378999
Q ss_pred EEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+||||++++. .||+|++|++|++. ..|++.+...
T Consensus 209 ivtH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 242 (260)
T 2ghi_A 209 IIAHRLSTIS-SAESIILLNKGKIV-EKGTHKDLLK 242 (260)
T ss_dssp EECSSGGGST-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred EEcCCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999986 59999999999974 5677776644
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-43 Score=370.22 Aligned_cols=201 Identities=20% Similarity=0.350 Sum_probs=170.3
Q ss_pred CccEEEEeEEEEe--CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ce
Q 008771 95 SSGVKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MK 162 (554)
Q Consensus 95 ~~~i~~~~ls~~y--~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~ 162 (554)
...|+++||+|+| ++..+|+||||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.+ ..
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 3569999999999 56789999999999999999999999999999999999998 99999999864 25
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
|+||||++.+++ .||++|+... .....+++.++
T Consensus 96 ig~v~Q~~~lf~-~tv~enl~~~----------------------------------------------~~~~~~~v~~~ 128 (390)
T 3gd7_A 96 FGVIPQKVFIFS-GTFRKNLDPN----------------------------------------------AAHSDQEIWKV 128 (390)
T ss_dssp EEEESCCCCCCS-EEHHHHHCTT----------------------------------------------CCSCHHHHHHH
T ss_pred EEEEcCCcccCc-cCHHHHhhhc----------------------------------------------cccCHHHHHHH
Confidence 999999998865 6999997411 00113345667
Q ss_pred hhhcCCCccccCCCCCC-----------CChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeE
Q 008771 243 MPELGFTADDGDRLVAS-----------FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPM 309 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~-----------LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tv 309 (554)
++.+|+. +..++++.+ |||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .+.|+
T Consensus 129 l~~~~L~-~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tv 207 (390)
T 3gd7_A 129 ADEVGLR-SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTV 207 (390)
T ss_dssp HHHTTCH-HHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCE
T ss_pred HHHhCCH-HHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEE
Confidence 7778875 456777777 999999999999999999999999999999999999999988865 47899
Q ss_pred EEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 310 IiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
|+||||++.+. .||||++|++|++. ..|+..+.+.
T Consensus 208 i~vtHd~e~~~-~aDri~vl~~G~i~-~~g~~~el~~ 242 (390)
T 3gd7_A 208 ILCEARIEAML-ECDQFLVIEENKVR-QYDSILELYH 242 (390)
T ss_dssp EEECSSSGGGT-TCSEEEEEETTEEE-EESSHHHHHH
T ss_pred EEEEcCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 99999987664 69999999999984 5577665443
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-42 Score=381.23 Aligned_cols=255 Identities=21% Similarity=0.353 Sum_probs=188.4
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~ 125 (554)
.+......+..++.+..+++|+.+..+.+.+... .. .........|+++||+|+|++ +++|+|+||+|++||+
T Consensus 297 pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~--~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~ 371 (582)
T 3b5x_A 297 PLKALTSVTSEFQRGMAACQTLFGLMDLETERDN---GK--YEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKT 371 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC---CC--CCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCE
Confidence 4555555666788888888888776544332111 00 000112356999999999974 6799999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
++|+||||||||||+++|+|+++|++|+|.++|.+. .|+||||++.++. .||+||+..+......
T Consensus 372 ~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~---- 446 (582)
T 3b5x_A 372 VALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAEGEYT---- 446 (582)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCCCCCC----
Confidence 999999999999999999999999999999998542 5999999998865 5999998643100000
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCccccCCCCCCCChhHHHHHHHHHH
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKI 273 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAra 273 (554)
.+++.+.+ +..+ + .+.++.+ |++. ..++...+||||||||++||||
T Consensus 447 ~~~~~~~~------------------------~~~~---l----~~~~~~~p~g~~t-~~~~~~~~LSgGq~qr~~iAra 494 (582)
T 3b5x_A 447 REQIEQAA------------------------RQAH---A----MEFIENMPQGLDT-VIGENGTSLSGGQRQRVAIARA 494 (582)
T ss_pred HHHHHHHH------------------------HHCC---C----HHHHHhCcccccc-hhcCCCCcCCHHHHHHHHHHHH
Confidence 00000000 0000 1 1111221 3322 2345568999999999999999
Q ss_pred HccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 274 L~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
|+.+|++|||||||++||+.+.+.+.+.+++ .|+|+|+||||++.+. .||+|++|++|++. ..|++++...
T Consensus 495 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 567 (582)
T 3b5x_A 495 LLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEII-ERGRHADLLA 567 (582)
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999999888754 3899999999999996 69999999999974 5688877654
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-42 Score=380.89 Aligned_cols=254 Identities=21% Similarity=0.295 Sum_probs=187.6
Q ss_pred hhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeC--CeeeEEceeEEEECCCEEEE
Q 008771 51 AATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGL 128 (554)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~--~~~~l~~isl~i~~Ge~~~l 128 (554)
.....+..++++..+.+|+.+..+.+++.... ............|+++|++|+|+ +.++|+|+||+|++||++||
T Consensus 298 ~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~i 374 (587)
T 3qf4_A 298 MIGNILNFIVRASASAKRVLEVLNEKPAIEEA---DNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAV 374 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCC---TTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC---CCccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEE
Confidence 33444456777888888887654433211110 00001112345699999999995 46799999999999999999
Q ss_pred ECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHH
Q 008771 129 VGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER 198 (554)
Q Consensus 129 vG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~ 198 (554)
+||||||||||+++|+|+++|++|+|.++|.+. +|+||||++.++ ..||+||+..+..... .+.
T Consensus 375 vG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~~~~~~~-----~~~ 448 (587)
T 3qf4_A 375 LGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLF-SGTIKENLKWGREDAT-----DDE 448 (587)
T ss_dssp ECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCC-SEEHHHHHTTTCSSCC-----HHH
T ss_pred ECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCc-CccHHHHHhccCCCCC-----HHH
Confidence 999999999999999999999999999998753 599999999886 4599999864311000 000
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc--CCCccccCCCCCCCChhHHHHHHHHHHHcc
Q 008771 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (554)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 276 (554)
+.. ..+. .. +.+.+..+ |++ ...++.+.+||||||||++|||||+.
T Consensus 449 ~~~------------------------~~~~---~~----~~~~i~~l~~g~~-~~~~~~~~~LSgGqrQrv~lARal~~ 496 (587)
T 3qf4_A 449 IVE------------------------AAKI---AQ----IHDFIISLPEGYD-SRVERGGRNFSGGQKQRLSIARALVK 496 (587)
T ss_dssp HHH------------------------HHHH---TT----CHHHHHTSSSGGG-CEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred HHH------------------------HHHH---hC----cHHHHHhcccchh-hHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence 000 0000 00 11112222 333 23466778999999999999999999
Q ss_pred CCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 277 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
+|++|||||||++||+.+...+.+.+++ .|+|+|+||||++.+. .||+|++|++|++ ...|++++....
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i-~~~g~~~el~~~ 567 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKV-AGFGTHKELLEH 567 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEE-EEEECHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEE-EEECCHHHHHhC
Confidence 9999999999999999999999888753 5899999999999996 7999999999997 567888887654
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=382.64 Aligned_cols=258 Identities=22% Similarity=0.376 Sum_probs=187.5
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~ 125 (554)
.+......+..++.+..+++|+++..+.+++.... ............|+++|++|+|++ .++|+|+||+|++||+
T Consensus 293 ~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~ 369 (578)
T 4a82_A 293 PLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNG---VGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGET 369 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCC---TTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC---CCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCE
Confidence 44445555567888888888887765544322110 000111122356999999999964 5799999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
+||+||||||||||+++|+|+++|++|+|.++|.+. .|+||||++.++. .||+||+..+.....
T Consensus 370 ~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~----- 443 (578)
T 4a82_A 370 VAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGRPTAT----- 443 (578)
T ss_dssp EEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGCSSCC-----
T ss_pred EEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCc-ccHHHHHhcCCCCCC-----
Confidence 999999999999999999999999999999998642 5999999998865 499999864321000
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 275 (554)
.+.+.+ .++... ....+..+.. |++ ...+....+|||||||||+|||||+
T Consensus 444 ~~~~~~------------------------~~~~~~---~~~~~~~lp~--g~~-t~~~~~g~~LSgGq~Qrv~lAral~ 493 (578)
T 4a82_A 444 DEEVVE------------------------AAKMAN---AHDFIMNLPQ--GYD-TEVGERGVKLSGGQKQRLSIARIFL 493 (578)
T ss_dssp HHHHHH------------------------HHHHTT---CHHHHHTSTT--GGG-CBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHH------------------------HHHHhC---cHHHHHhCcc--hhh-hhhccCCCcCCHHHHHHHHHHHHHH
Confidence 000000 000000 0111111111 222 1234556799999999999999999
Q ss_pred cCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
.+|++|||||||++||+.+...+.+.+++ .++|+|+||||++.+.. ||+|++|++|++ ...|++++...
T Consensus 494 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i-~~~g~~~el~~ 564 (578)
T 4a82_A 494 NNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHI-VETGTHRELIA 564 (578)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEE-EEEECHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEE-EEECCHHHHHh
Confidence 99999999999999999999988887753 57899999999999965 999999999998 46788877654
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=383.55 Aligned_cols=258 Identities=22% Similarity=0.326 Sum_probs=187.6
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC-eeeEEceeEEEECCCEE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKV 126 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~ 126 (554)
.+......+..++.+..+++|+.+..+.+.+... ............|+++||+|+|++ +++|+|+||+|++||++
T Consensus 309 ~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~----~~~~~~~~~~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~ 384 (598)
T 3qf4_B 309 PLNELSNQFNMIQMALASAERIFEILDLEEEKDD----PDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKV 384 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC----SSCCCCCSCCCCEEEEEEECCSSSSSCSCCSEEEECCTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC----CCCCCCCCCCCeEEEEEEEEECCCCCccccceEEEEcCCCEE
Confidence 4444555566778888888888776554432211 111111123356999999999964 67999999999999999
Q ss_pred EEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHH
Q 008771 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (554)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (554)
||+||||||||||+++|+|+++|++|+|.++|.+. .|+||||++.++ ..||+||+..+...
T Consensus 385 ~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~~~~~-------- 455 (598)
T 3qf4_B 385 ALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILF-STTVKENLKYGNPG-------- 455 (598)
T ss_dssp EEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCC-SSBHHHHHHSSSTT--------
T ss_pred EEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccc-cccHHHHHhcCCCC--------
Confidence 99999999999999999999999999999998643 599999999876 56999998643100
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHcc
Q 008771 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (554)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~ 276 (554)
..+.+ + .. ..........+..+.+ |++. .......+|||||||||+|||||+.
T Consensus 456 ----------~~~~~-~----------~~---~~~~~~~~~~~~~~~~--g~~t-~~~~~g~~LSgGq~Qrv~iAral~~ 508 (598)
T 3qf4_B 456 ----------ATDEE-I----------KE---AAKLTHSDHFIKHLPE--GYET-VLTDNGEDLSQGQRQLLAITRAFLA 508 (598)
T ss_dssp ----------CCTTH-H----------HH---HTTTTTCHHHHHTSTT--GGGC-BCHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred ----------CCHHH-H----------HH---HHHHhCCHHHHHhccc--cccc-hhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 00000 0 00 0000011111111111 1111 1123346899999999999999999
Q ss_pred CCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 277 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
+|++|||||||++||+.+...+.+.+++ .|+|+|+||||++.+.. ||+|++|++|++ ...|++++....
T Consensus 509 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i-~~~g~~~~l~~~ 579 (598)
T 3qf4_B 509 NPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEI-VEMGKHDELIQK 579 (598)
T ss_dssp CCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSE-EECSCHHHHHHT
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEE-EEECCHHHHHhC
Confidence 9999999999999999999998887754 58999999999999975 999999999997 567888877653
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-42 Score=380.59 Aligned_cols=257 Identities=22% Similarity=0.351 Sum_probs=187.4
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC--eeeEEceeEEEECCCE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~ 125 (554)
.+......+..++.+..+++|+.+..+.+.+... .. .........|+++||+|+|++ +++|+|+||+|++||+
T Consensus 297 pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~--~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~ 371 (582)
T 3b60_A 297 PLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE---GK--RVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKT 371 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC---CC--BCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC---CC--CCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCE
Confidence 4555555666778888888887765433322110 00 000112356999999999973 6799999999999999
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
+||+||||||||||+++|+|+++|++|+|.++|.+. .|+||||++.++. .||+||+..+......
T Consensus 372 ~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~---- 446 (582)
T 3b60_A 372 VALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-DTVANNIAYARTEEYS---- 446 (582)
T ss_dssp EEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTTSCCC----
T ss_pred EEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCCCCCC----
Confidence 999999999999999999999999999999998542 5999999998865 5999998643100000
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 275 (554)
.+++.+ ..+..+ +...++.+.+ |++ ...++...+||||||||++|||||+
T Consensus 447 ~~~~~~------------------------~l~~~~---l~~~~~~~p~--g~~-~~~~~~~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 447 REQIEE------------------------AARMAY---AMDFINKMDN--GLD-TIIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp HHHHHH------------------------HHHTTT---CHHHHHHSTT--GGG-SBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHH------------------------HHHHcC---CHHHHHhccc--ccc-ccccCCCCCCCHHHHHHHHHHHHHH
Confidence 000000 000011 1111111111 222 2334567899999999999999999
Q ss_pred cCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
.+|++|||||||++||+.+...+.+.+++ .|+|+|+||||++.+. .||+|++|++|++. ..|++++...
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 567 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIV-ERGTHSELLA 567 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEE-EecCHHHHHH
Confidence 99999999999999999999998887753 4899999999999986 69999999999974 5688776654
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=344.26 Aligned_cols=204 Identities=25% Similarity=0.368 Sum_probs=147.3
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccC
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~ 175 (554)
+.|+++||++.+ +++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++| .|+|+||++.+++
T Consensus 39 ~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g---~i~~v~Q~~~l~~- 112 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQNSWIMP- 112 (290)
T ss_dssp -----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS---CEEEECSSCCCCS-
T ss_pred ceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---EEEEEeCCCccCc-
Confidence 469999999864 5799999999999999999999999999999999999999999999987 5999999998766
Q ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC-ccccC
Q 008771 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-ADDGD 254 (554)
Q Consensus 176 ~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~ 254 (554)
.||.||+. ..... . . .....+ +.. . +.+.+..+... ....+
T Consensus 113 ~tv~enl~-~~~~~-~--~---~~~~~~------------------------~~~---~----l~~~l~~~~~~~~~~~~ 154 (290)
T 2bbs_A 113 GTIKENII-GVSYD-E--Y---RYRSVI------------------------KAC---Q----LEEDISKFAEKDNIVLG 154 (290)
T ss_dssp SBHHHHHH-TTCCC-H--H---HHHHHH------------------------HHT---T----CHHHHHTSTTGGGCBC-
T ss_pred ccHHHHhh-Ccccc-h--H---HHHHHH------------------------HHh---C----hHHHHHhccccccchhc
Confidence 49999986 32100 0 0 000000 000 0 11112222110 01234
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH-cc--CCCeEEEEecCHHHHHhhcceEEEeeC
Q 008771 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL-GK--QDVPMVIISHDRAFLDQLCTKIVETEM 331 (554)
Q Consensus 255 ~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l-~~--~g~tvIiisHd~~~l~~~~d~i~~l~~ 331 (554)
+.+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+ ++ .|+|||+||||++++. .||+|++|++
T Consensus 155 ~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~ 233 (290)
T 2bbs_A 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHE 233 (290)
T ss_dssp ---CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEET
T ss_pred CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEEC
Confidence 557899999999999999999999999999999999999999999863 33 4889999999999986 5999999999
Q ss_pred CeeeeccCChhHHH
Q 008771 332 GVSRTYEGNYSQYV 345 (554)
Q Consensus 332 g~~~~~~G~~~~~~ 345 (554)
|++. +.|++.+..
T Consensus 234 G~i~-~~g~~~~l~ 246 (290)
T 2bbs_A 234 GSSY-FYGTFSELQ 246 (290)
T ss_dssp TEEE-EEECHHHHH
T ss_pred CeEE-EeCCHHHHh
Confidence 9974 567776654
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-40 Score=395.03 Aligned_cols=255 Identities=21% Similarity=0.319 Sum_probs=185.7
Q ss_pred hhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCC---eeeEEceeEEEECCCEEEEECC
Q 008771 55 EKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGV 131 (554)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~---~~~l~~isl~i~~Ge~~~lvG~ 131 (554)
.+..+..+..+.+++++..+.+++..... .........+.|+++||+|+|++ .++|+||||+|++||++||||+
T Consensus 1037 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~---~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~ 1113 (1321)
T 4f4c_A 1037 YFPEYAKATFAGGIIFGMLRKISKIDSLS---LAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGP 1113 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCSSCTTC---CCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHhhCcccCCCcc---CCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECC
Confidence 33456777777787776544332211111 11111123456999999999964 3699999999999999999999
Q ss_pred CCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHH
Q 008771 132 NGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQK 201 (554)
Q Consensus 132 NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~ 201 (554)
||||||||+++|.|+++|++|+|.++|.++ +|+||||+|.+ ++.||++|+..+..+.
T Consensus 1114 SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~L-F~gTIreNI~~gld~~------------ 1180 (1321)
T 4f4c_A 1114 SGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTL-FDCSIAENIIYGLDPS------------ 1180 (1321)
T ss_dssp TTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCC-CSEEHHHHHSSSSCTT------------
T ss_pred CCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEe-eCccHHHHHhccCCCC------------
Confidence 999999999999999999999999999653 59999999988 5679999986432100
Q ss_pred HHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeE
Q 008771 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281 (554)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lL 281 (554)
...+ +++...++.. .+...+.++-+ |++... ...-.+||||||||++|||||+++|+||
T Consensus 1181 ----~~sd-----------~ei~~Al~~a---~l~~~I~~Lp~--GldT~v-ge~G~~LSgGQrQriaiARAllr~~~IL 1239 (1321)
T 4f4c_A 1181 ----SVTM-----------AQVEEAARLA---NIHNFIAELPE--GFETRV-GDRGTQLSGGQKQRIAIARALVRNPKIL 1239 (1321)
T ss_dssp ----TSCH-----------HHHHHHHHHT---TCHHHHHTSTT--TTCSEE-TTTSCSSCHHHHHHHHHHHHHHSCCSEE
T ss_pred ----CCCH-----------HHHHHHHHHh---CChHHHHcCcC--CCCCEe-cCCCcccCHHHHHHHHHHHHHHhCCCEE
Confidence 0000 0000011111 11111222111 343322 2234689999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHHHH
Q 008771 282 LLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEK 348 (554)
Q Consensus 282 lLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~~ 348 (554)
|||||||+||+++.+.+.+.|++ .++|+|+|+|+++.+.. ||+|++|++|+++. .|++.+.+..+
T Consensus 1240 iLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE-~Gth~eLl~~~ 1306 (1321)
T 4f4c_A 1240 LLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIE-KGTHTQLMSEK 1306 (1321)
T ss_dssp EEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEESSSSEEE-EECHHHHHHCC
T ss_pred EEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHhCC
Confidence 99999999999999999999976 48999999999999975 99999999999855 58888877643
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=354.74 Aligned_cols=202 Identities=27% Similarity=0.367 Sum_probs=170.4
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccccc
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (554)
..+++++|+++.|++. .|+++||+|++||++||+|+||||||||+|+|+|+++|++|+|.+ ...|+|+||++...+
T Consensus 285 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~---~~~i~~v~Q~~~~~~ 360 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW---DLTVAYKPQYIKADY 360 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC---CCCEEEECSSCCCCC
T ss_pred CeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE---CceEEEEecCCcCCC
Confidence 3579999999999875 699999999999999999999999999999999999999999986 347999999987777
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccC
Q 008771 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (554)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (554)
..||.+++...... . ......+.++++.+|+. ...+
T Consensus 361 ~~tv~~~~~~~~~~----------------------------------------~---~~~~~~~~~~l~~~~l~-~~~~ 396 (538)
T 1yqt_A 361 EGTVYELLSKIDAS----------------------------------------K---LNSNFYKTELLKPLGII-DLYD 396 (538)
T ss_dssp SSBHHHHHHHHHHH----------------------------------------H---HTCHHHHHHTTTTTTCG-GGTT
T ss_pred CCcHHHHHHhhhcc----------------------------------------C---CCHHHHHHHHHHHcCCh-hhhc
Confidence 88997765321000 0 00124567789999996 5779
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceEEEee
Q 008771 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 255 ~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i~~l~ 330 (554)
+++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|++ .|.|||+||||++++..+||||++|+
T Consensus 397 ~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~ 476 (538)
T 1yqt_A 397 REVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE 476 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999888753 48999999999999999999999998
Q ss_pred C--CeeeeccCChhHHH
Q 008771 331 M--GVSRTYEGNYSQYV 345 (554)
Q Consensus 331 ~--g~~~~~~G~~~~~~ 345 (554)
+ |.+ ...|+..+..
T Consensus 477 ~~~~~~-~~~g~~~~~~ 492 (538)
T 1yqt_A 477 GEPGKY-GRALPPMGMR 492 (538)
T ss_dssp EETTTE-EEECCCEEHH
T ss_pred CCcceE-eecCCHHHHH
Confidence 5 443 3457665543
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=356.30 Aligned_cols=202 Identities=27% Similarity=0.373 Sum_probs=170.0
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccccc
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (554)
..+++++|+++.|++. .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+. ..|+|+||++...+
T Consensus 355 ~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~---~~i~~v~Q~~~~~~ 430 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---LTVAYKPQYIKAEY 430 (607)
T ss_dssp CEEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC---CCEEEECSSCCCCC
T ss_pred ceEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe---eEEEEEecCccCCC
Confidence 3579999999999774 6999999999999999999999999999999999999999999873 46999999988778
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccC
Q 008771 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (554)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (554)
..||.+++...... . .....++.++++.+|+. +..+
T Consensus 431 ~~tv~e~~~~~~~~------------------------------~-------------~~~~~~~~~~l~~~~l~-~~~~ 466 (607)
T 3bk7_A 431 EGTVYELLSKIDSS------------------------------K-------------LNSNFYKTELLKPLGII-DLYD 466 (607)
T ss_dssp SSBHHHHHHHHHHH------------------------------H-------------HHCHHHHHHTHHHHTCT-TTTT
T ss_pred CCcHHHHHHhhhcc------------------------------C-------------CCHHHHHHHHHHHcCCc-hHhc
Confidence 88998766421000 0 00123467788899996 5779
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceEEEee
Q 008771 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 255 ~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i~~l~ 330 (554)
+++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|++ .|.|||+||||++++..+||||++|+
T Consensus 467 ~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~ 546 (607)
T 3bk7_A 467 RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 546 (607)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc
Confidence 99999999999999999999999999999999999999999998887753 58999999999999999999999998
Q ss_pred C--CeeeeccCChhHHH
Q 008771 331 M--GVSRTYEGNYSQYV 345 (554)
Q Consensus 331 ~--g~~~~~~G~~~~~~ 345 (554)
+ |.+ ...|+..+..
T Consensus 547 ~~~g~~-~~~g~p~~~~ 562 (607)
T 3bk7_A 547 GEPGRH-GRALPPMGMR 562 (607)
T ss_dssp EETTTE-EEECCCEEHH
T ss_pred CCcceE-EecCCHHHHH
Confidence 5 443 3456665543
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-39 Score=349.52 Aligned_cols=192 Identities=25% Similarity=0.326 Sum_probs=164.5
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccccc
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (554)
...++++|+++.|++. .|+++||+|++||++||+|+||||||||+|+|+|+++|++|+|.+++ ..|+|++|+....+
T Consensus 267 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~--~~i~~~~q~~~~~~ 343 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK--QILSYKPQRIFPNY 343 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC--CCEEEECSSCCCCC
T ss_pred cceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--eeeEeechhccccc
Confidence 4568999999999874 58888999999999999999999999999999999999999999875 36899999987777
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccC
Q 008771 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (554)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (554)
..||.+|+..... . ........+.++++.+|+. ...+
T Consensus 344 ~~tv~~~l~~~~~-----------------~-------------------------~~~~~~~~~~~~l~~~~l~-~~~~ 380 (538)
T 3ozx_A 344 DGTVQQYLENASK-----------------D-------------------------ALSTSSWFFEEVTKRLNLH-RLLE 380 (538)
T ss_dssp SSBHHHHHHHHCS-----------------S-------------------------TTCTTSHHHHHTTTTTTGG-GCTT
T ss_pred CCCHHHHHHHhhh-----------------h-------------------------ccchhHHHHHHHHHHcCCH-HHhc
Confidence 8899988742100 0 0001123467788999986 5678
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcceEEEee
Q 008771 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 255 ~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d~i~~l~ 330 (554)
+++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+ +.|.|||+||||++++..+||||++|+
T Consensus 381 ~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~ 460 (538)
T 3ozx_A 381 SNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK 460 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999999999988888764 358999999999999999999999998
Q ss_pred CC
Q 008771 331 MG 332 (554)
Q Consensus 331 ~g 332 (554)
++
T Consensus 461 ~~ 462 (538)
T 3ozx_A 461 GE 462 (538)
T ss_dssp EE
T ss_pred CC
Confidence 63
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=364.22 Aligned_cols=245 Identities=23% Similarity=0.375 Sum_probs=175.8
Q ss_pred CccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccc
Q 008771 95 SSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~ 172 (554)
.++|+++|++|+|++ +++|+|+||+|++|+++||+|+||||||||+|+|+|+++|++|+|.+++ +.+|+|++|++..
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~-~~~I~yv~Q~~~~ 747 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE-NCRIAYIKQHAFA 747 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT-TCCEEEECHHHHH
T ss_pred CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC-ccceEeeccchhh
Confidence 457999999999975 6799999999999999999999999999999999999999999999985 3579999998632
Q ss_pred ----ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHh---------------------h----------------------
Q 008771 173 ----SMSRTVREEFMSAFKEEMEIAGKLERVQKALE---------------------S---------------------- 205 (554)
Q Consensus 173 ----~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~---------------------~---------------------- 205 (554)
....|+.+++...+....... .+......+. .
T Consensus 748 ~l~~~~~~t~~e~i~~~~q~g~d~~-~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~EN 826 (986)
T 2iw3_A 748 HIESHLDKTPSEYIQWRFQTGEDRE-TMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGEN 826 (986)
T ss_dssp HGGGCTTSCHHHHHHHHTTTSSCTT-TTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEES
T ss_pred hhhcccccCHHHHHHHHhhccchhh-hhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhh
Confidence 234688887653221000000 0000000000 0
Q ss_pred ------ccCc-----------HHH---HHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccc-cCCCCCCCChhH
Q 008771 206 ------AVDD-----------MDL---MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD-GDRLVASFSSGW 264 (554)
Q Consensus 206 ------~~~~-----------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~-~~~~~~~LSGGq 264 (554)
.... ... +..+..+++................++.++|+.+||.... .++++.+|||||
T Consensus 827 i~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQ 906 (986)
T 2iw3_A 827 IGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQ 906 (986)
T ss_dssp TTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHH
T ss_pred hhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHH
Confidence 0000 000 0000001110000001111223456789999999997544 578899999999
Q ss_pred HHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCCh
Q 008771 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341 (554)
Q Consensus 265 rqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~ 341 (554)
||||+|||||+.+|+||||||||++||+.++..+.+.|++.++|||+||||++++..+||+|++|++|++.....+|
T Consensus 907 kQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~~~ 983 (986)
T 2iw3_A 907 KVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHNW 983 (986)
T ss_dssp HHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC-----
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCcc
Confidence 99999999999999999999999999999999999999998999999999999999999999999999875443333
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=380.33 Aligned_cols=215 Identities=23% Similarity=0.400 Sum_probs=166.1
Q ss_pred CccEEEEeEEEEeCCe---eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------
Q 008771 95 SSGVKLENISKSYKGV---TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~---~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~---------- 161 (554)
.+.|+++||+|+|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 1107 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107 (1284)
T ss_dssp SCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTT
T ss_pred CCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHh
Confidence 4569999999999753 699999999999999999999999999999999999999999999998653
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
+|+||||++.+ +..||+||+..+.... ....+.+. ...+ ...+.+
T Consensus 1108 ~i~~v~Q~~~l-~~~ti~eNi~~~~~~~-----------------~~~~~~i~----------~~~~-------~~~~~~ 1152 (1284)
T 3g5u_A 1108 QLGIVSQEPIL-FDCSIAENIAYGDNSR-----------------VVSYEEIV----------RAAK-------EANIHQ 1152 (1284)
T ss_dssp SCEEEESSCCC-CSSBHHHHHTCCCSSC-----------------CCCHHHHH----------HHHH-------HHTCHH
T ss_pred ceEEECCCCcc-ccccHHHHHhccCCCC-----------------CCCHHHHH----------HHHH-------HhCcHH
Confidence 59999999976 5679999986431000 00000000 0000 000111
Q ss_pred Hhhhc--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHH
Q 008771 242 LMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRA 317 (554)
Q Consensus 242 ~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~ 317 (554)
.+..+ |++. .......+|||||||||+|||||+.+|+||||||||++||+.+.+.+.+.+++ .|+|+|+||||++
T Consensus 1153 ~i~~l~~gldt-~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~ 1231 (1284)
T 3g5u_A 1153 FIDSLPDKYNT-RVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLS 1231 (1284)
T ss_dssp HHSSTTTGGGC-BCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTT
T ss_pred HHHhCcccccc-ccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHH
Confidence 22222 2211 12334578999999999999999999999999999999999999999888753 4889999999999
Q ss_pred HHHhhcceEEEeeCCeeeeccCChhHHHHH
Q 008771 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
++.. ||||++|++|++. ..|++++++..
T Consensus 1232 ~i~~-~dri~vl~~G~i~-~~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1232 TIQN-ADLIVVIQNGKVK-EHGTHQQLLAQ 1259 (1284)
T ss_dssp GGGS-CSEEEEEETBEEE-EEECHHHHHHS
T ss_pred HHHc-CCEEEEEECCEEE-EECCHHHHHhC
Confidence 9965 9999999999985 56888877654
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-37 Score=336.62 Aligned_cols=198 Identities=23% Similarity=0.298 Sum_probs=163.7
Q ss_pred EeEEEEeCC-eeeEEceeEEEECC-----CEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccccc
Q 008771 101 ENISKSYKG-VTVLKDVTWEVKKG-----EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (554)
Q Consensus 101 ~~ls~~y~~-~~~l~~isl~i~~G-----e~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (554)
.+++++|++ ..+++++||++.+| |++||+|+||||||||+++|+|+++|++|+.. ....++|+||+....+
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~---~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI---PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC---CSCCEEEECSSCCCCC
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc---cCCcEEEecccccccC
Confidence 678889976 46899999999999 88999999999999999999999999999842 2357999999987777
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccC
Q 008771 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (554)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (554)
..||.+++...+. ........+.++++.+|+. +..+
T Consensus 427 ~~tv~e~~~~~~~-------------------------------------------~~~~~~~~~~~~l~~l~l~-~~~~ 462 (608)
T 3j16_B 427 PGTVRQLFFKKIR-------------------------------------------GQFLNPQFQTDVVKPLRID-DIID 462 (608)
T ss_dssp CSBHHHHHHHHCS-------------------------------------------STTTSHHHHHHTHHHHTST-TTSS
T ss_pred CccHHHHHHHHhh-------------------------------------------cccccHHHHHHHHHHcCCh-hhhc
Confidence 7899887632110 0001123456778888986 5679
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcceEEEee
Q 008771 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (554)
Q Consensus 255 ~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisHd~~~l~~~~d~i~~l~ 330 (554)
+++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|++ .|.|||+||||++++..+||||++|+
T Consensus 463 ~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 463 QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFE 542 (608)
T ss_dssp SBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999888777643 58999999999999999999999998
Q ss_pred C--CeeeeccCChhHHHH
Q 008771 331 M--GVSRTYEGNYSQYVL 346 (554)
Q Consensus 331 ~--g~~~~~~G~~~~~~~ 346 (554)
+ |++ .+.|+..+.+.
T Consensus 543 ~~~g~~-~~~g~p~~~~~ 559 (608)
T 3j16_B 543 GIPSKN-AHARAPESLLT 559 (608)
T ss_dssp EETTTE-EECCCCEEHHH
T ss_pred CCCCeE-EecCChHHHhh
Confidence 5 665 56677666554
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=340.82 Aligned_cols=183 Identities=20% Similarity=0.254 Sum_probs=140.7
Q ss_pred ccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCC--eEeecCCCCCCCHHHHHHHHHHH---ccCCC
Q 008771 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYL---GKQDV 307 (554)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~--lLlLDEPt~~LD~~~~~~l~~~l---~~~g~ 307 (554)
+++..++. .|..+||....+++++.+|||||+|||+||++|+.+|+ +|||||||++||+...++|.+.| ++.|.
T Consensus 354 ~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~ 432 (842)
T 2vf7_A 354 ADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGN 432 (842)
T ss_dssp HHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCC
Confidence 34566776 58899997555799999999999999999999999995 99999999999999999888865 56799
Q ss_pred eEEEEecCHHHHHhhcceEEEe------eCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 008771 308 PMVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN 381 (554)
Q Consensus 308 tvIiisHd~~~l~~~~d~i~~l------~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (554)
|||+||||++++. .||+|++| ++|++ ++.|+++++....+... ...+ ..
T Consensus 433 TVIvVeHdl~~l~-~aD~ii~lgpgaG~~~G~i-v~~g~~~~~~~~~~~~~-----------------~~~l---~~--- 487 (842)
T 2vf7_A 433 SLFVVEHDLDVIR-RADWLVDVGPEAGEKGGEI-LYSGPPEGLKHVPESQT-----------------GQYL---FA--- 487 (842)
T ss_dssp EEEEECCCHHHHT-TCSEEEEECSSSGGGCCSE-EEEECGGGGGGCTTCHH-----------------HHHH---HT---
T ss_pred EEEEEcCCHHHHH-hCCEEEEeCCCcccCCCEE-EEecCHHHHHhchHHHH-----------------HHHh---hh---
Confidence 9999999999885 69999999 45654 78899987654211000 0000 00
Q ss_pred chhhHHHHHHHHHHHHhhhhccccccccceeeccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCC
Q 008771 382 SGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGC 461 (554)
Q Consensus 382 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGs 461 (554)
..+.. +.....++.+|+++++++ ..|+++||+|++||++||+|+|||
T Consensus 488 --------------------~~~~~--------~~~~~~~~~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGS 534 (842)
T 2vf7_A 488 --------------------DRHTE--------PHTPREPAGWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGS 534 (842)
T ss_dssp --------------------CCCCC--------CCCCCCCSCEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTS
T ss_pred --------------------ccccc--------ccccCCCCceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCc
Confidence 00000 000113467899999986 269999999999999999999999
Q ss_pred cHHHHHHH-HhCCC
Q 008771 462 GKSTLLKL-IMGLE 474 (554)
Q Consensus 462 GKSTLlk~-L~G~~ 474 (554)
|||||+++ |+|++
T Consensus 535 GKSTLl~~~L~g~l 548 (842)
T 2vf7_A 535 GKSTLVSQALVDAL 548 (842)
T ss_dssp SHHHHCCCCCHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999997 76543
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-35 Score=332.07 Aligned_cols=173 Identities=20% Similarity=0.305 Sum_probs=130.0
Q ss_pred HHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCC--eEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEe
Q 008771 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (554)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~--lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiis 313 (554)
..+.|..+||.....++++.+|||||+|||+|||||+.+|+ +|||||||+|||+....+|.+.|+ +.|.|||+||
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34578889997656789999999999999999999999887 999999999999999999988765 4689999999
Q ss_pred cCHHHHHhhcceEEEe------eCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHH
Q 008771 314 HDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASS 387 (554)
Q Consensus 314 Hd~~~l~~~~d~i~~l------~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (554)
||++++.. ||+|++| ++|++ .+.|+++++........ +..
T Consensus 524 Hd~~~~~~-aD~ii~lgpgag~~~G~i-v~~G~~~e~~~~~~~~~----------------~~~---------------- 569 (916)
T 3pih_A 524 HDEEVIRN-ADHIIDIGPGGGTNGGRV-VFQGTVDELLKNPDSSL----------------TGE---------------- 569 (916)
T ss_dssp CCHHHHHT-CSEEEEEESSSGGGCSEE-EEEECHHHHHHSCTTCH----------------HHH----------------
T ss_pred CCHHHHHh-CCEEEEEcCCcccCCCEE-EEeechhhhhcCchhcc----------------hhh----------------
Confidence 99999975 9999999 67765 68899887654211000 000
Q ss_pred HHHHHHHHHHhhhhccccccccceeeccCCCCCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHH
Q 008771 388 AEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLL 467 (554)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLl 467 (554)
.+.. ... ...+...+.....+++++++ ...++++||+|+.||+++|+|+||||||||+
T Consensus 570 ------~l~~----~~~-------~~~~~~~~~~~~~l~v~~~~-----~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 570 ------YLSG----KRK-------ITVNKTRRLPYASLKIKGVR-----HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp ------HHHS----SSC-------CCCCSSCCCCSSEEEEEEEC-----STTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred ------hhhc----ccc-------cccccccccccceEEEeeec-----cccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 0000 000 00111111223346666664 2469999999999999999999999999997
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-36 Score=339.28 Aligned_cols=180 Identities=19% Similarity=0.270 Sum_probs=136.9
Q ss_pred cHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCC--CeEeecCCCCCCCHHHHHHHHHHH---ccCCCe
Q 008771 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYL---GKQDVP 308 (554)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p--~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~t 308 (554)
++..++ +.|..+||....+++++.+|||||+|||+||++|..+| ++|||||||++||+...++|.+.| ++.|.|
T Consensus 480 ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~T 558 (972)
T 2r6f_A 480 EIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNT 558 (972)
T ss_dssp HHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCE
T ss_pred HHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCE
Confidence 345555 45899999755679999999999999999999999985 999999999999999999988775 457999
Q ss_pred EEEEecCHHHHHhhcceEEEe------eCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Q 008771 309 MVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS 382 (554)
Q Consensus 309 vIiisHd~~~l~~~~d~i~~l------~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (554)
||+||||++++. .||+|++| ++|++ ++.|+++++...... ..
T Consensus 559 VIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~i-v~~G~~~e~~~~~~s------------------------------lt 606 (972)
T 2r6f_A 559 LIVVEHDEDTML-AADYLIDIGPGAGIHGGEV-VAAGTPEEVMNDPNS------------------------------LT 606 (972)
T ss_dssp EEEECCCHHHHH-SCSEEEEECSSSGGGCCSE-EEEECTTTTTTCTTC------------------------------TT
T ss_pred EEEEecCHHHHH-hCCEEEEeCCCccCCCCEE-EEecCHHHHHhhhHH------------------------------HH
Confidence 999999999986 69999999 45654 788998876432100 00
Q ss_pred hhhHHHHHHHHHHHHhhhhccccccccceeeccCCC-CCCCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCC
Q 008771 383 GRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG-RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGC 461 (554)
Q Consensus 383 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGs 461 (554)
++ .+.. ... ...+... ..+.++|++++++. ..|+++||+|++||++||+|+|||
T Consensus 607 ~~---------~l~g----~~~-------~~~~~~~~~~~~~~L~v~~l~~-----~~Lk~Vsl~I~~Geiv~I~G~nGS 661 (972)
T 2r6f_A 607 GQ---------YLSG----KKF-------IPIPAERRRPDGRWLEVVGARE-----HNLKNVSVKIPLGTFVAVTGVSGS 661 (972)
T ss_dssp HH---------HHHT----SSC-------CCCCSSCCCCCSCEEEEEEECS-----SSCCSEEEEEESSSEEECCBCTTS
T ss_pred HH---------HhcC----Ccc-------ccCccccccccceEEEEecCcc-----cccccceEEEcCCCEEEEEcCCCC
Confidence 00 0000 000 0011111 12346899999873 369999999999999999999999
Q ss_pred cHHHHHHHHh
Q 008771 462 GKSTLLKLIM 471 (554)
Q Consensus 462 GKSTLlk~L~ 471 (554)
|||||+++|+
T Consensus 662 GKSTLl~~ll 671 (972)
T 2r6f_A 662 GKSTLVNEVL 671 (972)
T ss_dssp SHHHHHTTTH
T ss_pred CHHHHHHHHH
Confidence 9999999854
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-32 Score=303.03 Aligned_cols=107 Identities=21% Similarity=0.286 Sum_probs=91.8
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCC---eEeecCCCCCCCHHHHHHHHHHHc---cCCCeEE
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD---LLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMV 310 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~---lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvI 310 (554)
.++.+.+..+|+.....++++.+|||||||||+|||||+.+|+ ||||||||++||+.+...+.++++ +.|.|||
T Consensus 521 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi 600 (670)
T 3ux8_A 521 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 600 (670)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 3456678889987656789999999999999999999999875 999999999999999988888764 4589999
Q ss_pred EEecCHHHHHhhcceEEEe------eCCeeeeccCChhHHH
Q 008771 311 IISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYV 345 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l------~~g~~~~~~G~~~~~~ 345 (554)
+||||++++. .||+|++| ++|++ .+.|+..+..
T Consensus 601 ~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i-~~~g~~~~~~ 639 (670)
T 3ux8_A 601 VIEHNLDVIK-TADYIIDLGPEGGDRGGQI-VAVGTPEEVA 639 (670)
T ss_dssp EECCCHHHHT-TCSEEEEEESSSGGGCCEE-EEEECHHHHH
T ss_pred EEeCCHHHHH-hCCEEEEecCCcCCCCCEE-EEecCHHHHH
Confidence 9999999985 69999999 78887 5678777654
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=292.33 Aligned_cols=108 Identities=18% Similarity=0.231 Sum_probs=94.2
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccC---CCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEE
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD---PDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMV 310 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~---p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvI 310 (554)
.++.++|+.+||.....++++.+|||||||||+||++|+.+ |+||||||||+|||+..++.|.++|+ +.|.|||
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 46788999999976556899999999999999999999996 79999999999999999998888764 4699999
Q ss_pred EEecCHHHHHhhcceEEEe------eCCeeeeccCChhHHHH
Q 008771 311 IISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l------~~g~~~~~~G~~~~~~~ 346 (554)
+||||++++ .+||+|++| ++|++ .+.|++.++..
T Consensus 788 visHdl~~i-~~aDrii~L~p~~g~~~G~I-v~~g~~~el~~ 827 (842)
T 2vf7_A 788 AVEHKMQVV-AASDWVLDIGPGAGEDGGRL-VAQGTPAEVAQ 827 (842)
T ss_dssp EECCCHHHH-TTCSEEEEECSSSGGGCCSE-EEEECHHHHTT
T ss_pred EEcCCHHHH-HhCCEEEEECCCCCCCCCEE-EEEcCHHHHHh
Confidence 999999999 689999999 57776 56787776543
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.6e-34 Score=303.43 Aligned_cols=195 Identities=12% Similarity=0.071 Sum_probs=157.8
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCce-e-EEEcCC-CceEEEEecccc
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-N-VIKAKS-NMKIAFLSQEFE 171 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G-~-I~~~~~-~~~i~~v~Q~~~ 171 (554)
.++++++||++.|+ ++||+|++|++++|+||||||||||+|+|+|+++|++| + |.+++. ...++|+||++.
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~ 189 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCIS 189 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCE
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchh
Confidence 45789999999995 79999999999999999999999999999999999999 9 999873 235899999985
Q ss_pred cc---cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 172 VS---MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 172 ~~---~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++ ...|+.+|+ .... .........++..++..+|+
T Consensus 190 l~~~~~~~tv~eni-~~~~-----------------------------------------~~~~~~~~~~~~~ll~~~gl 227 (460)
T 2npi_A 190 ATPISDILDAQLPT-WGQS-----------------------------------------LTSGATLLHNKQPMVKNFGL 227 (460)
T ss_dssp EEECCSCCCTTCTT-CSCB-----------------------------------------CBSSCCSSCCBCCEECCCCS
T ss_pred hcccccccchhhhh-cccc-----------------------------------------cccCcchHHHHHHHHHHhCC
Confidence 43 345777665 2100 00000011234567888898
Q ss_pred CccccCCCCCCCChhHHHHHHHHHH--HccCCCe----EeecC-CCCCCCHHHHHHHHHHHccCCCeEEEEecCHH----
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKI--LLQDPDL----LLLDE-PTNHLDLDTIEWLEGYLGKQDVPMVIISHDRA---- 317 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAra--L~~~p~l----LlLDE-Pt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~---- 317 (554)
... .+ +.+|||||||||+|||| |+.+|++ ||||| ||++||+. .+.|.+++++.+.|+|+|+||..
T Consensus 228 ~~~-~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~ 303 (460)
T 2npi_A 228 ERI-NE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLW 303 (460)
T ss_dssp SSG-GG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHH
T ss_pred Ccc-cc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhh
Confidence 642 23 78999999999999999 9999999 99999 99999999 88888888888999999999987
Q ss_pred --HHHhhcce-----EEEee-CCeeeeccCChhH
Q 008771 318 --FLDQLCTK-----IVETE-MGVSRTYEGNYSQ 343 (554)
Q Consensus 318 --~l~~~~d~-----i~~l~-~g~~~~~~G~~~~ 343 (554)
++..+||+ |++|+ +|++. .|+..+
T Consensus 304 ~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~~~ 335 (460)
T 2npi_A 304 EKVKKTFGPELGNNNIFFIPKLDGVS--AVDDVY 335 (460)
T ss_dssp HHHHHHHHHHHCGGGEEEECCCTTCC--CCCHHH
T ss_pred HHHHHHhcccccCCEEEEEeCCCcEE--ECCHHH
Confidence 88899999 99999 99875 676543
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-29 Score=269.08 Aligned_cols=224 Identities=13% Similarity=0.124 Sum_probs=142.8
Q ss_pred eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC--------------------------------------CCce
Q 008771 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--------------------------------------PDSG 152 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--------------------------------------p~~G 152 (554)
.+|++++|+|.+| +++|+|+||||||||+++|.++.. +..|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 5899999999999 999999999999999999977664 4478
Q ss_pred eEEEcCCCc-----------eEEEEecccccccCc-cHHHHHHHhhHH-----HHHHHHHHHHHHHHHhhccCc------
Q 008771 153 NVIKAKSNM-----------KIAFLSQEFEVSMSR-TVREEFMSAFKE-----EMEIAGKLERVQKALESAVDD------ 209 (554)
Q Consensus 153 ~I~~~~~~~-----------~i~~v~Q~~~~~~~~-tv~e~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~------ 209 (554)
++.++|... .+++++|+..++... ..+-.+...+.. ..........+..........
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 888887543 289999987654321 111112111100 000001111111110000000
Q ss_pred --------HHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcccc----------------------C-----
Q 008771 210 --------MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG----------------------D----- 254 (554)
Q Consensus 210 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~----------------------~----- 254 (554)
.+.+...+.+...............+...+.+.+..++++.... .
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 00000000111000000001112334566777788777653110 0
Q ss_pred --CCCCC-CChhHHHHHHHHHHHccCC--CeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEE
Q 008771 255 --RLVAS-FSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIV 327 (554)
Q Consensus 255 --~~~~~-LSGGqrqRv~LAraL~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~ 327 (554)
+++.. |||||||||+||++|+.+| ++|||||||+|||+.++.+|.++|++ .|.|||+||||++++ .+||+|+
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~ 366 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHY 366 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEE
Confidence 23333 6999999999999999999 99999999999999999999998875 379999999999887 5799999
Q ss_pred Ee----eCCeeee
Q 008771 328 ET----EMGVSRT 336 (554)
Q Consensus 328 ~l----~~g~~~~ 336 (554)
+| ++|++..
T Consensus 367 ~l~k~~~~G~~~~ 379 (415)
T 4aby_A 367 KVEKQVEDGRTVS 379 (415)
T ss_dssp EEEEEEETTEEEE
T ss_pred EEEEeccCCceEE
Confidence 99 8888653
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-31 Score=293.73 Aligned_cols=322 Identities=12% Similarity=0.086 Sum_probs=187.5
Q ss_pred cEEEEeEEEEeCCeeeEEceeE-EEECCCEEEEECCCCccHHHHHHH--HHCCCCCCceeEEEcCCCc---------eEE
Q 008771 97 GVKLENISKSYKGVTVLKDVTW-EVKKGEKVGLVGVNGAGKTTQLRI--IAGQEEPDSGNVIKAKSNM---------KIA 164 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl-~i~~Ge~~~lvG~NGsGKSTLlk~--i~G~~~p~~G~I~~~~~~~---------~i~ 164 (554)
.++.+++.+.+++.++|++||| .|++|++++|+|+||||||||+++ ++|+++|++|.|++++.+. .+|
T Consensus 12 ~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g 91 (525)
T 1tf7_A 12 NSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFG 91 (525)
T ss_dssp --CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGT
T ss_pred CccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcC
Confidence 3555667665667889999999 999999999999999999999999 7899999999999887531 234
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|++|++..... +. .+.... .....++++
T Consensus 92 ~~~q~~~~~~~------l~---------------------------------------------~~~~~~-~~~~~~~l~ 119 (525)
T 1tf7_A 92 WDLAKLVDEGK------LF---------------------------------------------ILDASP-DPEGQEVVG 119 (525)
T ss_dssp CCHHHHHHTTS------EE---------------------------------------------EEECCC-CSSCCSCCS
T ss_pred CChHHhhccCc------EE---------------------------------------------EEecCc-ccchhhhhc
Confidence 44443221000 00 000000 000011222
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCC-----CCHHHHHHHHHHH---ccCCCeEEEEecCH
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNH-----LDLDTIEWLEGYL---GKQDVPMVIISHDR 316 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~-----LD~~~~~~l~~~l---~~~g~tvIiisHd~ 316 (554)
.+++. ...++.+..|||| +|++++|||||+. ||+..+..+.+++ ++.|.|||+|||++
T Consensus 120 ~~~l~-~~~~~~~~~LS~g-------------~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~ 185 (525)
T 1tf7_A 120 GFDLS-ALIERINYAIQKY-------------RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERI 185 (525)
T ss_dssp SHHHH-HHHHHHHHHHHHH-------------TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECS
T ss_pred ccCHH-HHHHHHHHHHHHc-------------CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 22221 1223334445555 5889999999985 5888887777765 44699999999999
Q ss_pred HHH---------HhhcceEEEeeCCeeeeccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHH
Q 008771 317 AFL---------DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASS 387 (554)
Q Consensus 317 ~~l---------~~~~d~i~~l~~g~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (554)
+++ ..+||+|++|++|.. .|....++.. ..+. +....
T Consensus 186 ~~~~~~~~~~i~~~laD~vi~L~~~~~---~G~~~r~l~~--------------------------~k~r-~~~~~---- 231 (525)
T 1tf7_A 186 EEYGPIARYGVEEFVSDNVVILRNVLE---GERRRRTLEI--------------------------LKLR-GTSHM---- 231 (525)
T ss_dssp SSSSCSSTTSCHHHHCSEEEEEEEECS---TTCCEEEEEE--------------------------EEET-TSCCC----
T ss_pred CCccccccccceeeeeeEEEEEEEEcc---CCceeEEEEE--------------------------EECC-CCCCC----
Confidence 884 566999999988532 1211100000 0000 00000
Q ss_pred HHHHHHHHHHhhhhccccccccceee-ccCCCCCCCceEEEeeeeEecCCccceec-eEEEEecCCEEEEECCCCCcHHH
Q 008771 388 AEKKLERLQEEEQIEKPFQRKQMKIR-FPERGRSGRSVVTIKNLEFGYEDRLLFNR-ANLTIERGEKTAIIGPNGCGKST 465 (554)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~y~~~~~l~~-vs~~i~~Ge~iaIvG~NGsGKST 465 (554)
....++.....-+. +|......++.++++++++.|++ |+. ++..|.+|++++|+|+|||||||
T Consensus 232 ------------~~~~~~~i~~~gi~v~p~~~~~~~~~~~~~~l~~g~~~---ld~vL~g~i~~G~i~~i~G~~GsGKST 296 (525)
T 1tf7_A 232 ------------KGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVR---LDEMCGGGFFKDSIILATGATGTGKTL 296 (525)
T ss_dssp ------------CSEEEEEEETTEEEECCTTTCCSCCCCCCCEECCSCHH---HHHHTTSSEESSCEEEEEECTTSSHHH
T ss_pred ------------CceEEEEEcCCCEEEEeccccccccccccceeecChHH---HHHHhCCCCCCCcEEEEEeCCCCCHHH
Confidence 00000000000011 11111123445678888876643 222 24599999999999999999999
Q ss_pred HHHHHhCCCCCCceEEEECCceeeEEEEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCC
Q 008771 466 LLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLS 545 (554)
Q Consensus 466 Llk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LS 545 (554)
|++.|+|...|. |. .+ ..|.+|++. ..+.++.... .+...+ +..+|+. ...+++|..||
T Consensus 297 Ll~~l~g~~~~~-G~------~v-i~~~~ee~~------~~l~~~~~~~--g~~~~~----~~~~g~~-~~~~~~p~~LS 355 (525)
T 1tf7_A 297 LVSRFVENACAN-KE------RA-ILFAYEESR------AQLLRNAYSW--GMDFEE----MERQNLL-KIVCAYPESAG 355 (525)
T ss_dssp HHHHHHHHHHTT-TC------CE-EEEESSSCH------HHHHHHHHTT--SCCHHH----HHHTTSE-EECCCCGGGSC
T ss_pred HHHHHHHHHHhC-CC------CE-EEEEEeCCH------HHHHHHHHHc--CCCHHH----HHhCCCE-EEEEeccccCC
Confidence 999999998875 42 11 123455431 1233333211 122222 2234432 34567889999
Q ss_pred hhhhhcccC
Q 008771 546 GGEKIILLY 554 (554)
Q Consensus 546 GGek~Rl~l 554 (554)
|||+||+++
T Consensus 356 ~g~~q~~~~ 364 (525)
T 1tf7_A 356 LEDHLQIIK 364 (525)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999863
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-29 Score=285.52 Aligned_cols=108 Identities=19% Similarity=0.312 Sum_probs=93.9
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCC---CeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEE
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP---DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMV 310 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvI 310 (554)
.++.++|..+||.....++++.+|||||||||+|||||+.+| +||||||||+|||+.+++.|.+.|+ +.|.|||
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 466788999999766678999999999999999999999876 6999999999999999999888764 4699999
Q ss_pred EEecCHHHHHhhcceEEEe------eCCeeeeccCChhHHHH
Q 008771 311 IISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l------~~g~~~~~~G~~~~~~~ 346 (554)
+||||++++.. ||+|++| ++|++ ++.|+..+...
T Consensus 863 vI~HdL~~i~~-ADrIivLgp~gg~~~G~I-v~~Gtpeel~~ 902 (916)
T 3pih_A 863 VIEHNLDVIKN-ADHIIDLGPEGGKEGGYI-VATGTPEEIAK 902 (916)
T ss_dssp EECCCHHHHTT-CSEEEEEESSSGGGCCEE-EEEESHHHHHS
T ss_pred EEeCCHHHHHh-CCEEEEecCCCCCCCCEE-EEEcCHHHHHh
Confidence 99999999965 9999999 77876 57788776543
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-29 Score=285.34 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=92.5
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCC---CeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEE
Q 008771 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP---DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVI 311 (554)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIi 311 (554)
++.++|+.+||.....++++.+|||||||||+||++|+.+| +||||||||+|||+..+..|.+.|+ +.|.|||+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678999999755678999999999999999999999875 9999999999999999999888764 46999999
Q ss_pred EecCHHHHHhhcceEEEe------eCCeeeeccCChhHHHH
Q 008771 312 ISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 312 isHd~~~l~~~~d~i~~l------~~g~~~~~~G~~~~~~~ 346 (554)
||||++++ ..||+|++| ++|++ .+.|+..++..
T Consensus 904 isHdl~~i-~~aDrIivL~p~gG~~~G~I-v~~g~~~el~~ 942 (972)
T 2r6f_A 904 IEHNLDVI-KTADYIIDLGPEGGDRGGQI-VAVGTPEEVAE 942 (972)
T ss_dssp ECCCHHHH-TTCSEEEEECSSSTTSCCSE-EEEESHHHHHT
T ss_pred EcCCHHHH-HhCCEEEEEcCCCCCCCCEE-EEecCHHHHHh
Confidence 99999998 479999999 57776 56777776643
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-27 Score=246.27 Aligned_cols=81 Identities=23% Similarity=0.329 Sum_probs=74.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHc------cCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcc
Q 008771 254 DRLVASFSSGWQMRMSLGKILL------QDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 254 ~~~~~~LSGGqrqRv~LAraL~------~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~~~d 324 (554)
++++.+|||||||||+||+||+ .+|++|||||||++||+.++.++.+.|+ +.|.|||+||||++++ ..||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~-~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFS-EAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHH-TTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHH-HhCC
Confidence 5788999999999999999999 7999999999999999999999988775 3589999999999985 6799
Q ss_pred eEEEeeCCeee
Q 008771 325 KIVETEMGVSR 335 (554)
Q Consensus 325 ~i~~l~~g~~~ 335 (554)
+|++|++|+++
T Consensus 353 ~~~~l~~G~i~ 363 (365)
T 3qf7_A 353 RKLRITGGVVV 363 (365)
T ss_dssp CEEEEETTEEC
T ss_pred EEEEEECCEEE
Confidence 99999999863
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=231.22 Aligned_cols=131 Identities=27% Similarity=0.435 Sum_probs=111.9
Q ss_pred CceEEEeeeeEecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008771 422 RSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------ 488 (554)
.++|+++|+++.|++ ..+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 357999999999975 4599999999999999999999999999999999999999999999999765
Q ss_pred eEEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++...+ +..||.||+..... ... ...+..+|..+++. +..++++..|||||||||+|
T Consensus 85 ~ig~v~Q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~i 154 (275)
T 3gfo_A 85 SIGIVFQDPDNQL-FSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAI 154 (275)
T ss_dssp SEEEECSSGGGTC-CSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHH
T ss_pred cEEEEEcCccccc-ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHH
Confidence 3789999975445 47899999976532 112 24578899999994 57899999999999999975
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=238.58 Aligned_cols=128 Identities=27% Similarity=0.448 Sum_probs=113.5
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------eEE
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------LPN 491 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------~~~ 491 (554)
.|+++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence 58999999999988899999999999999999999999999999999999999999999998765 268
Q ss_pred EEecccccCCCCCCCHHHHHHhhccc------CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|++|++ .+++.+||.||+..+... .....+.++|+.+++. +..+++|.+|||||||||+|
T Consensus 84 ~vfQ~~--~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 84 YLVQEG--VLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS-ELAGRYPHELSGGQQQRAAL 149 (359)
T ss_dssp EECTTC--CCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG-GGTTSCGGGSCHHHHHHHHH
T ss_pred EEeCCC--cCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHH
Confidence 999986 588999999999876431 1134678899999995 57899999999999999975
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-26 Score=223.74 Aligned_cols=129 Identities=29% Similarity=0.338 Sum_probs=111.1
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------------
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------- 488 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------------- 488 (554)
+.|+++|+++.|+++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 368999999999888899999999999999999999999999999999999999999999998654
Q ss_pred eEEEEecccccCCCCCCCHHHHHHhhcc--cC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 LPNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.||+..... .. ..+.+..+|+.+++. +..++++..|||||||||+|
T Consensus 83 ~i~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~l 151 (224)
T 2pcj_A 83 KLGFVFQFH--YLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG-DKLSRKPYELSGGEQQRVAI 151 (224)
T ss_dssp HEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHH
T ss_pred cEEEEecCc--ccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHH
Confidence 268999985 46678999999876421 11 124578899999995 56789999999999999975
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-26 Score=225.90 Aligned_cols=129 Identities=29% Similarity=0.362 Sum_probs=109.2
Q ss_pred eEEEeeeeEecCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008771 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------- 488 (554)
+|+++|+++.|++ ..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 3789999999963 3589999999999999999999999999999999999999999999998654
Q ss_pred ---eEEEEecccccCCCCCCCHHHHHHhhcc-----cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 ---LPNYFEQNQAEALDLDKTVLETVAEAAE-----DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ---~~~y~~Q~~~~~l~~~~tv~e~l~~~~~-----~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.||+..+.. ... ...+..+|+.+++.....++++..|||||||||+|
T Consensus 81 ~~~~i~~v~Q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~i 156 (235)
T 3tif_A 81 RRDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAI 156 (235)
T ss_dssp HHHHEEEECTTC--CCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHH
T ss_pred hhccEEEEecCC--ccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHH
Confidence 278999986 47788899999976421 111 24577899999996544589999999999999975
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-29 Score=240.93 Aligned_cols=154 Identities=20% Similarity=0.200 Sum_probs=98.1
Q ss_pred EeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEc-------CCCceEEEEecccccccCccH
Q 008771 106 SYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA-------KSNMKIAFLSQEFEVSMSRTV 178 (554)
Q Consensus 106 ~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~-------~~~~~i~~v~Q~~~~~~~~tv 178 (554)
+|+++.+|+|| ++||+++|+||||||||||+++|+|+ +|++|+|... .....|||+||++
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 46667789986 89999999999999999999999999 9999998431 0123588999876
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCC
Q 008771 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (554)
Q Consensus 179 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~ 258 (554)
.+|+........ ..+. .. ....++.++++. |+
T Consensus 76 ~enl~~~~~~~~----------~~~~------------------------~~---~~~~~~~~~l~~-gl---------- 107 (208)
T 3b85_A 76 NEKIDPYLRPLH----------DALR------------------------DM---VEPEVIPKLMEA-GI---------- 107 (208)
T ss_dssp ----CTTTHHHH----------HHHT------------------------TT---SCTTHHHHHHHT-TS----------
T ss_pred HHHHHHHHHHHH----------HHHH------------------------Hh---ccHHHHHHHHHh-CC----------
Confidence 333310000000 0000 00 001234444444 32
Q ss_pred CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 259 ~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
||||||+|||||+.+|++|||||||++ ++..+.++|++ .|.||| ||||++++.. +..+.+|.
T Consensus 108 ----Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~----~~~~~~G~ 171 (208)
T 3b85_A 108 ----VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL----PGGQKSGL 171 (208)
T ss_dssp ----EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC----------------CC
T ss_pred ----chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC----cCCCCCcH
Confidence 999999999999999999999999999 77777777754 478999 9999987753 33345553
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-26 Score=228.01 Aligned_cols=129 Identities=26% Similarity=0.337 Sum_probs=111.2
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-------------
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------- 489 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~------------- 489 (554)
+.|+++|+++.|++..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 4699999999998878999999999999999999999999999999999999999999999986542
Q ss_pred ----------EEEEecccccCCCCCCCHHHHHHhhc---ccCC----HHHHHHHHhhCCCChhh-hccccCcCChhhhhc
Q 008771 490 ----------PNYFEQNQAEALDLDKTVLETVAEAA---EDWR----IDDIKGLLGRCNFKADM-LDRKVSLLSGGEKII 551 (554)
Q Consensus 490 ----------~~y~~Q~~~~~l~~~~tv~e~l~~~~---~~~~----~~~~~~~L~~~~l~~~~-~~~~~~~LSGGek~R 551 (554)
++|++|++ .+++..||.||+.... .... ...+..+|+.+++. +. .++++..||||||||
T Consensus 85 ~~~~~~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGq~qR 161 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID-ERAQGKYPVHLSGGQQQR 161 (262)
T ss_dssp HHHHHHHHHHEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC-HHHHTSCGGGSCHHHHHH
T ss_pred hhhHHHHhcceEEEecCc--ccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhcCCcccCCHHHHHH
Confidence 68999985 4778889999997632 1112 24578899999996 45 799999999999999
Q ss_pred ccC
Q 008771 552 LLY 554 (554)
Q Consensus 552 l~l 554 (554)
|+|
T Consensus 162 v~l 164 (262)
T 1b0u_A 162 VSI 164 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 975
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-26 Score=219.51 Aligned_cols=127 Identities=26% Similarity=0.394 Sum_probs=110.8
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eEEEEeccc
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQNQ 497 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----~~~y~~Q~~ 497 (554)
..|+++|+++.|++ .+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|++
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~ 87 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI 87 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCC
Confidence 46999999999988 899999999999999999999999999999999999999999999998664 478999986
Q ss_pred ccCCCCCCCHHHHHHhhcc----cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 498 AEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 498 ~~~l~~~~tv~e~l~~~~~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.+++..||.||+..... ......+..+++.+++.. . ++++..|||||||||+|
T Consensus 88 --~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~-~-~~~~~~LSgGqkqrv~l 144 (214)
T 1sgw_A 88 --IVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-L-KKKLGELSQGTIRRVQL 144 (214)
T ss_dssp --CCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-T-TSBGGGSCHHHHHHHHH
T ss_pred --cCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCc-C-CCChhhCCHHHHHHHHH
Confidence 36677899999876421 123567889999999964 4 89999999999999874
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-26 Score=237.29 Aligned_cols=128 Identities=29% Similarity=0.460 Sum_probs=113.1
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEec
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q 495 (554)
.|+++|+++.|++..+++++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++ .++|++|
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 48999999999988899999999999999999999999999999999999999999999998765 3789999
Q ss_pred ccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++.+||.||+..+.. ... ...+.++|+.+++. +..+++|..|||||||||+|
T Consensus 83 ~~--~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~p~~LSGGqrQRVai 144 (381)
T 3rlf_A 83 SY--ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAI 144 (381)
T ss_dssp TC--CCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTCCGGGSCHHHHHHHHH
T ss_pred CC--cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhHCCHHHHHHHHH
Confidence 86 58899999999977532 111 24678899999995 57899999999999999975
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-26 Score=230.42 Aligned_cols=133 Identities=20% Similarity=0.300 Sum_probs=111.4
Q ss_pred CCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-----------
Q 008771 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489 (554)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~----------- 489 (554)
++++|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 18 ~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred CCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 456799999999998888999999999999999999999999999999999999999999999986543
Q ss_pred -EEEEecccccCCCCCCCHHHHHHhhcc-------cCC---HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 490 -PNYFEQNQAEALDLDKTVLETVAEAAE-------DWR---IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 490 -~~y~~Q~~~~~l~~~~tv~e~l~~~~~-------~~~---~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++|++...+.+..||.||+..+.. ... ...+..+|+.+++. +..++++..|||||||||+|
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqRv~l 172 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS-AKAQQYIGYLSTGEKQRVMI 172 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHH
Confidence 689999864334445799999976421 011 23578899999994 56899999999999999975
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-26 Score=227.21 Aligned_cols=129 Identities=26% Similarity=0.377 Sum_probs=111.5
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------eE
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------LP 490 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------~~ 490 (554)
..|+++|+++.|+++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 23 ~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 23 QMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp CSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred heEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence 369999999999887899999999999999999999999999999999999999999999998654 26
Q ss_pred EEEecccccCCCCCCCHHHHHHhhc---ccCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAA---EDWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++ .+++..||.||+.... .... ...+..+|+.+++. +..++++..|||||||||+|
T Consensus 103 ~~v~Q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~l 170 (263)
T 2olj_A 103 GMVFQRF--NLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK-DKAHAYPDSLSGGQAQRVAI 170 (263)
T ss_dssp EEECSSC--CCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHH
T ss_pred EEEeCCC--cCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHH
Confidence 8999985 4678889999997642 1122 24578899999995 56889999999999999975
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.2e-26 Score=226.08 Aligned_cols=130 Identities=28% Similarity=0.440 Sum_probs=113.4
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEE
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPN 491 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~ 491 (554)
.++|+++|+++.|+++.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 9 ~~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp CCEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred cceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 3589999999999988899999999999999999999999999999999999999999999998765 268
Q ss_pred EEecccccCCCCCCCHHHHHHhhcc----cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
|++|++ .+.+..||.||+..... ......+..+|+.+++. +..++++..|||||||||+|
T Consensus 89 ~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~QRv~i 152 (266)
T 4g1u_C 89 VMRQYS--ELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCL-ALAQRDYRVLSGGEQQRVQL 152 (266)
T ss_dssp EECSCC--CCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCS-TTTTSBGGGCCHHHHHHHHH
T ss_pred EEecCC--ccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHH
Confidence 999985 35577899999987542 12245688899999995 46789999999999999975
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.5e-26 Score=233.85 Aligned_cols=132 Identities=28% Similarity=0.393 Sum_probs=114.6
Q ss_pred CCCceEEEeeeeEec-CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eE
Q 008771 420 SGRSVVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LP 490 (554)
Q Consensus 420 ~~~~~l~~~~l~~~y-~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~ 490 (554)
.|...|+++|+++.| ++..+++++||+|.+||+++|+||||||||||||+|+|+++|++|+|.++|.++ .+
T Consensus 10 ~~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 89 (355)
T 1z47_A 10 HGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89 (355)
T ss_dssp -CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSE
T ss_pred CCCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcE
Confidence 456789999999999 777799999999999999999999999999999999999999999999998765 37
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++ .+++..||.||+..... ... ...+.++|+.+++. +..+++|.+|||||||||+|
T Consensus 90 g~v~Q~~--~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRval 156 (355)
T 1z47_A 90 GLVFQNY--ALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE-SYANRFPHELSGGQQQRVAL 156 (355)
T ss_dssp EEECGGG--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHH
T ss_pred EEEecCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHH
Confidence 8999985 47889999999987532 112 24578899999994 57899999999999999975
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-26 Score=223.42 Aligned_cols=130 Identities=25% Similarity=0.379 Sum_probs=110.6
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eE
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LP 490 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----------~~ 490 (554)
.+.|+++|+++.|+++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 4 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred CceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 4579999999999888899999999999999999999999999999999999999999999998654 27
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcc---cCC--HHHHHHHHhhCC-CChhhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAE---DWR--IDDIKGLLGRCN-FKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~---~~~--~~~~~~~L~~~~-l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++ .+++..||.||+..... ... ...+..+++.++ +. +..++++..|||||||||+|
T Consensus 84 ~~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LSgGq~qrv~l 150 (240)
T 1ji0_A 84 ALVPEGR--RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-ERLKQLGGTLSGGEQQMLAI 150 (240)
T ss_dssp EEECSSC--CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-TTTTSBSSSSCHHHHHHHHH
T ss_pred EEEecCC--ccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHh-hHhcCChhhCCHHHHHHHHH
Confidence 8999985 46678899999987531 111 235677888884 73 56789999999999999875
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-26 Score=236.84 Aligned_cols=90 Identities=19% Similarity=0.275 Sum_probs=75.5
Q ss_pred cCCCCCCCChhHHHHHHHHHHHc----cCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceE
Q 008771 253 GDRLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 253 ~~~~~~~LSGGqrqRv~LAraL~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i 326 (554)
.++++..||||||||++||++|+ .+|++|||||||++||+...+.|.+++++ .+.|+|+|||+.+ +..+||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceE
Confidence 56778899999999999999997 68999999999999999999999988754 3789999999975 45689987
Q ss_pred --EEeeCCeeeeccCChhH
Q 008771 327 --VETEMGVSRTYEGNYSQ 343 (554)
Q Consensus 327 --~~l~~g~~~~~~G~~~~ 343 (554)
++|.+|...+...+.++
T Consensus 292 ~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEESSSCEEEEECCC--
T ss_pred EEEEEeCCEEEEEEEEcch
Confidence 88889987666555443
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.7e-27 Score=217.22 Aligned_cols=148 Identities=14% Similarity=0.110 Sum_probs=99.2
Q ss_pred ceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccccccc-CccHHHHHHHhhHHHHHHH
Q 008771 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM-SRTVREEFMSAFKEEMEIA 193 (554)
Q Consensus 115 ~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~-~~tv~e~~~~~~~~~~~~~ 193 (554)
||||+|++||+++|+|+||||||||++++.+-.. .+.. +.-.++++|++.... ..++.+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~------~~~~-d~~~g~~~~~~~~~~~~~~~~~~~~---------- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE------VISS-DFCRGLMSDDENDQTVTGAAFDVLH---------- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG------EEEH-HHHHHHHCSSTTCGGGHHHHHHHHH----------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe------EEcc-HHHHHHhcCcccchhhHHHHHHHHH----------
Confidence 6899999999999999999999999998653221 1111 111256666543211 111111110
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHH
Q 008771 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273 (554)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAra 273 (554)
..... ....|... ..+ .....|||||||++||+|
T Consensus 64 -------------------------------------------~~~~~-~~~~g~~~-~~~-~~~~~s~g~~qrv~iAra 97 (171)
T 4gp7_A 64 -------------------------------------------YIVSK-RLQLGKLT-VVD-ATNVQESARKPLIEMAKD 97 (171)
T ss_dssp -------------------------------------------HHHHH-HHHTTCCE-EEE-SCCCSHHHHHHHHHHHHH
T ss_pred -------------------------------------------HHHHH-HHhCCCeE-EEE-CCCCCHHHHHHHHHHHHH
Confidence 00000 11123322 112 234579999999999999
Q ss_pred HccCCCeEeecCCCCCCCHH----------------HHHHHHHHHc---cCCCeEEEEecCHHHHHhhcceE
Q 008771 274 LLQDPDLLLLDEPTNHLDLD----------------TIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 274 L~~~p~lLlLDEPt~~LD~~----------------~~~~l~~~l~---~~g~tvIiisHd~~~l~~~~d~i 326 (554)
++.+|++|+|||||++||+. ....+.+.++ +.|.|+|+||||++++.. ++++
T Consensus 98 l~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~-~~~~ 168 (171)
T 4gp7_A 98 YHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE-VVFE 168 (171)
T ss_dssp TTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH-EEEE
T ss_pred cCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh-hhhc
Confidence 99999999999999999999 5577777753 348999999999999976 4443
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-26 Score=234.22 Aligned_cols=132 Identities=27% Similarity=0.358 Sum_probs=112.0
Q ss_pred CCCceEEEeeeeEecCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------
Q 008771 420 SGRSVVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------- 488 (554)
Q Consensus 420 ~~~~~l~~~~l~~~y~~----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------- 488 (554)
..+++|+++|+++.|+. ..+++++||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++
T Consensus 20 ~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 20 DDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp ---CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred CCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 34568999999999963 3589999999999999999999999999999999999999999999998765
Q ss_pred ------eEEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 ------LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.||+..+.. ... ...+.++|+.+|+. +..+++|.+|||||||||+|
T Consensus 100 ~~~~r~~Ig~v~Q~~--~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~LSGGqkQRVaI 174 (366)
T 3tui_C 100 LTKARRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAI 174 (366)
T ss_dssp HHHHHTTEEEECSSC--CCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG-GGTTCCTTTSCHHHHHHHHH
T ss_pred HHHHhCcEEEEeCCC--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHH
Confidence 278999986 47788999999986532 112 24578899999995 57899999999999999975
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-26 Score=225.14 Aligned_cols=130 Identities=25% Similarity=0.336 Sum_probs=111.7
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eE
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LP 490 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----------~~ 490 (554)
.+.|+++|+++.|++..+++++||+|.+||+++|+||||||||||+|+|+|+++|++|+|.++|.++ .+
T Consensus 5 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred CcEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 3479999999999888899999999999999999999999999999999999999999999998654 26
Q ss_pred EEEecccccCCCCCCCHHHHHHhhccc---------------C-C---HHHHHHHHhhCCCChhhhccccCcCChhhhhc
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAED---------------W-R---IDDIKGLLGRCNFKADMLDRKVSLLSGGEKII 551 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~~---------------~-~---~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~R 551 (554)
+|++|++ .+++..||.||+...... . . ...+..+|+.+++. +..++++..||||||||
T Consensus 85 ~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkQr 161 (257)
T 1g6h_A 85 VRTFQTP--QPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMKL 161 (257)
T ss_dssp EECCCCC--GGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHH
T ss_pred EEEccCC--ccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc-hhhCCCchhCCHHHHHH
Confidence 8999986 356778999999865311 1 1 23578899999995 56899999999999999
Q ss_pred ccC
Q 008771 552 LLY 554 (554)
Q Consensus 552 l~l 554 (554)
|+|
T Consensus 162 v~i 164 (257)
T 1g6h_A 162 VEI 164 (257)
T ss_dssp HHH
T ss_pred HHH
Confidence 975
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=232.06 Aligned_cols=128 Identities=27% Similarity=0.410 Sum_probs=112.4
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEec
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q 495 (554)
.|+++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|++|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 48999999999888899999999999999999999999999999999999999999999998765 3789999
Q ss_pred ccccCCCCCCCHHHHHHhhccc--C----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++..||.||+...... . ....+.++|+.+++. +..+++|.+|||||||||+|
T Consensus 83 ~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSgGq~QRval 144 (359)
T 2yyz_A 83 NY--ALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLID-NLLDRKPTQLSGGQQQRVAL 144 (359)
T ss_dssp SC--CCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHH
T ss_pred Cc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHH
Confidence 85 477899999999876431 1 124578899999995 57899999999999999975
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=223.48 Aligned_cols=129 Identities=26% Similarity=0.337 Sum_probs=111.3
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEEE
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYF 493 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y~ 493 (554)
..|+++|+++.|+++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v 93 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYL 93 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEE
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEE
Confidence 469999999999888899999999999999999999999999999999999999999999998654 37899
Q ss_pred ecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++ .+++..||.||+..... ... ...+..+|..+++. +..++++..|||||||||+|
T Consensus 94 ~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~l 157 (256)
T 1vpl_A 94 PEEA--GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLI 157 (256)
T ss_dssp CTTC--CCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-GGGGSBGGGCCHHHHHHHHH
T ss_pred cCCC--CCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHH
Confidence 9986 36678899999876421 111 23578899999995 56899999999999999875
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-25 Score=231.94 Aligned_cols=128 Identities=30% Similarity=0.397 Sum_probs=112.0
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEec
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q 495 (554)
.|+++|+++.|++..+++++||+|.+||+++|+||||||||||||+|+|+++|++|+|.++|.++ .++|++|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 48999999999887899999999999999999999999999999999999999999999998765 3789999
Q ss_pred ccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++..||.||+..+.. ... ...+.++|+.+++. +..+++|.+|||||||||+|
T Consensus 83 ~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRval 144 (362)
T 2it1_A 83 NW--ALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-KLLNRYPWQLSGGQQQRVAI 144 (362)
T ss_dssp TC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHH
T ss_pred Cc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhhCChhhCCHHHHHHHHH
Confidence 85 47789999999987532 111 24578899999995 56899999999999999975
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-25 Score=231.98 Aligned_cols=128 Identities=30% Similarity=0.467 Sum_probs=108.2
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEec
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q 495 (554)
.|+++|+++.|++..+++++||+|.+||+++|+||||||||||||+|+|+++|++|+|.++|.++ .++|++|
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence 48999999999887899999999999999999999999999999999999999999999998765 3789999
Q ss_pred ccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++.+||.||+..+.. ... ...+.++|+.+++. +..+++|.+|||||||||+|
T Consensus 91 ~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRval 152 (372)
T 1v43_A 91 SY--AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLSGGQRQRVAV 152 (372)
T ss_dssp --------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCCSSCHHHHHH
T ss_pred Cc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHH
Confidence 85 47789999999987642 112 23578899999994 57899999999999999975
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-25 Score=230.20 Aligned_cols=126 Identities=26% Similarity=0.384 Sum_probs=111.0
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEecc
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q~ 496 (554)
|+++|+++.|++. +++++||+|.+||+++|+||||||||||||+|+|+++|++|+|.++|.++ .++|++|+
T Consensus 2 l~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~ 80 (348)
T 3d31_A 2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQN 80 (348)
T ss_dssp EEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTT
T ss_pred EEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecC
Confidence 7899999999887 99999999999999999999999999999999999999999999998765 36899998
Q ss_pred cccCCCCCCCHHHHHHhhcc---cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 497 QAEALDLDKTVLETVAEAAE---DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~---~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+ .+++.+||.||+..+.. ......+.++|+.+++. +..+++|..|||||||||+|
T Consensus 81 ~--~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSgGq~QRval 138 (348)
T 3d31_A 81 Y--SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVAL 138 (348)
T ss_dssp C--CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHH
T ss_pred c--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHH
Confidence 5 47889999999987532 11226788999999995 56899999999999999975
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-25 Score=230.58 Aligned_cols=128 Identities=24% Similarity=0.391 Sum_probs=111.8
Q ss_pred eEEEeeeeEecCCcc--ceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------
Q 008771 424 VVTIKNLEFGYEDRL--LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~--~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------- 488 (554)
.|+++|+++.|++.. +++++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 489999999998777 99999999999999999999999999999999999999999999998654
Q ss_pred eEEEEecccccCCCCCCCHHHHHHhhccc--CC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 LPNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.||+..+... .. ...+.++|+.+++. +..+++|.+|||||||||+|
T Consensus 83 ~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSGGq~QRval 151 (353)
T 1oxx_K 83 KIGMVFQTW--ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQRVAL 151 (353)
T ss_dssp CEEEEETTS--CCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHH
T ss_pred CEEEEeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHH
Confidence 268999985 477899999999876431 12 24578899999994 57899999999999999975
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-26 Score=215.19 Aligned_cols=135 Identities=13% Similarity=0.130 Sum_probs=101.9
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCC-ceeEEEc----CCCceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHH
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKA----KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~-~G~I~~~----~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 199 (554)
+++|+||||||||||+++|+|++... .|..... .....+||++|++. +.+++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~------~~~~~----------------- 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE------GKKKI----------------- 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT------CCEEE-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc------HHHHH-----------------
Confidence 68999999999999999999998521 2322110 11235788888751 11111
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc-cccCCCCCCCChhHHHHHHHHHH-----
Q 008771 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA-DDGDRLVASFSSGWQMRMSLGKI----- 273 (554)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~-~~~~~~~~~LSGGqrqRv~LAra----- 273 (554)
+..+++.. ...++++.+||||||||++||+|
T Consensus 59 -------------------------------------------~~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~ 95 (178)
T 1ye8_A 59 -------------------------------------------FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREA 95 (178)
T ss_dssp -------------------------------------------EEETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------HHhhcCCccccccccccCcCHHHHHHHHHHhhccccc
Confidence 01111111 24567788999999999999996
Q ss_pred HccCCCeEeecC--CCCCCCHHHHHHHHHHHccCCCeEEEEe---cCHHHHHhhcce
Q 008771 274 LLQDPDLLLLDE--PTNHLDLDTIEWLEGYLGKQDVPMVIIS---HDRAFLDQLCTK 325 (554)
Q Consensus 274 L~~~p~lLlLDE--Pt~~LD~~~~~~l~~~l~~~g~tvIiis---Hd~~~l~~~~d~ 325 (554)
|+.+|++||||| ||++||+...+++.+.+.+.+.|+|++| ||+.++..+|++
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 999999999999 9999999999999999988888788888 599999999998
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-25 Score=220.70 Aligned_cols=130 Identities=25% Similarity=0.327 Sum_probs=110.4
Q ss_pred eEEEeeeeEecC--C---ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------eEE
Q 008771 424 VVTIKNLEFGYE--D---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPN 491 (554)
Q Consensus 424 ~l~~~~l~~~y~--~---~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------~~~ 491 (554)
.|+++|+++.|+ + +.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 488999999997 4 5699999999999999999999999999999999999999999999998764 378
Q ss_pred EEecccccCCCCCCCHHHHHHhhcc-----cCCHHHHHHHHhhCCCCh-hhhccccCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAAE-----DWRIDDIKGLLGRCNFKA-DMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~-----~~~~~~~~~~L~~~~l~~-~~~~~~~~~LSGGek~Rl~l 554 (554)
|++|++.. +.+..||.||+..... ......+..+|..+++.. +..++++..|||||||||+|
T Consensus 82 ~v~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~l 149 (266)
T 2yz2_A 82 IAFQYPED-QFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAI 149 (266)
T ss_dssp EECSSGGG-GCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHH
T ss_pred EEeccchh-hcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHH
Confidence 99998633 3356899999986531 122456889999999962 56899999999999999975
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-25 Score=230.00 Aligned_cols=128 Identities=26% Similarity=0.407 Sum_probs=111.5
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------------e
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------------L 489 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------------~ 489 (554)
.|+++|+++.|++..+++++||+|.+||+++|+||||||||||||+|+|+++|++|+|.++|.++ .
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 48999999999888899999999999999999999999999999999999999999999998654 2
Q ss_pred EEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 490 PNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++|++ .+++.+||.||+..+.. ... ...+.++|+.+++. +..+++|.+|||||||||+|
T Consensus 83 ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRval 150 (372)
T 1g29_1 83 IAMVFQSY--ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQRVAL 150 (372)
T ss_dssp EEEECSCC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-GGTTCCGGGSCHHHHHHHHH
T ss_pred EEEEeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCCcccCCHHHHHHHHH
Confidence 68999985 47789999999987532 112 24578899999994 57899999999999999975
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-24 Score=215.26 Aligned_cols=127 Identities=26% Similarity=0.461 Sum_probs=104.7
Q ss_pred eEEEeeeeEec--CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEE
Q 008771 424 VVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPN 491 (554)
Q Consensus 424 ~l~~~~l~~~y--~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~ 491 (554)
-++++|+++.| +++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 48999999999 356799999999999999999999999999999999999999999999998654 268
Q ss_pred EEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhh-----------ccccCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML-----------DRKVSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~-----------~~~~~~LSGGek~Rl~l 554 (554)
|++|++. ++. .||.||+...........+..++..+++. +.+ ++++..|||||||||+|
T Consensus 87 ~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~i 156 (247)
T 2ff7_A 87 VVLQDNV--LLN-RSIIDNISLANPGMSVEKVIYAAKLAGAH-DFISELREGYNTIVGEQGAGLSGGQRQRIAI 156 (247)
T ss_dssp EECSSCC--CTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCH-HHHHTSTTGGGCBCSTTTTCCCHHHHHHHHH
T ss_pred EEeCCCc--ccc-ccHHHHHhccCCCCCHHHHHHHHHHhChH-HHHHhCcchhhhhhhCCCCCCCHHHHHHHHH
Confidence 9999863 443 69999997754334455677777777763 233 34568999999999975
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-24 Score=215.04 Aligned_cols=125 Identities=28% Similarity=0.536 Sum_probs=107.3
Q ss_pred eEEEeeeeEecC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEecccccCCC
Q 008771 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502 (554)
Q Consensus 424 ~l~~~~l~~~y~-~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~ 502 (554)
.|+++|+++.|+ ++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+.. .++|++|++ .++
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~---~i~~v~q~~--~~~ 78 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQ---SIGFVPQFF--SSP 78 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECS---CEEEECSCC--CCS
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEec---cEEEEcCCC--ccC
Confidence 689999999998 77899999999999999999999999999999999999999999998532 478999986 355
Q ss_pred CCCCHHHHHHhhcc---c----CC---HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 503 LDKTVLETVAEAAE---D----WR---IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 503 ~~~tv~e~l~~~~~---~----~~---~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+..||.||+..... . .. ...+..+|..+++. +..++++..|||||||||+|
T Consensus 79 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~l 139 (253)
T 2nq2_C 79 FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-HLAKREFTSLSGGQRQLILI 139 (253)
T ss_dssp SCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHH
T ss_pred CCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh-HHhcCChhhCCHHHHHHHHH
Confidence 67899999987531 1 11 24578899999995 56789999999999999975
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-24 Score=213.89 Aligned_cols=124 Identities=27% Similarity=0.395 Sum_probs=106.8
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEecc
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q~ 496 (554)
++++|+++.|++ +++++||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|+
T Consensus 2 l~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (240)
T 2onk_A 2 FLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQD 78 (240)
T ss_dssp CEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred EEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCC
Confidence 689999999975 59999999999 99999999999999999999999999999999998664 36899998
Q ss_pred cccCCCCCCCHHHHHHhhcccC----CHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 497 QAEALDLDKTVLETVAEAAEDW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+ .+++..||.||+....... ....+.++|+.+++. +..++++..|||||||||+|
T Consensus 79 ~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~l 137 (240)
T 2onk_A 79 Y--ALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVAL 137 (240)
T ss_dssp C--CCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHH
T ss_pred C--ccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHH
Confidence 5 4677889999998753211 134578899999995 56789999999999999874
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-24 Score=217.05 Aligned_cols=124 Identities=29% Similarity=0.459 Sum_probs=108.1
Q ss_pred EEEeeeeEecCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------eEE-E
Q 008771 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPN-Y 492 (554)
Q Consensus 425 l~~~~l~~~y~~----~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------~~~-y 492 (554)
|+++|+++.|++ +.+++++||+|. ||+++|+||||||||||+++|+|++ |++|+|.++|.++ .++ |
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~ 79 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTN 79 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEEC
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEE
Confidence 789999999976 679999999999 9999999999999999999999999 9999999998654 478 9
Q ss_pred EecccccCCCCCCCHHHHHHhhcc--cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++. + ..||.||+..... ......+..+|+.+++..+..++++..|||||||||+|
T Consensus 80 v~Q~~~--l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~l 139 (263)
T 2pjz_A 80 LPEAYE--I--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRT 139 (263)
T ss_dssp CGGGSC--T--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHH
T ss_pred eCCCCc--c--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHH
Confidence 999863 3 7899999976532 34456788999999996356899999999999999875
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.5e-25 Score=217.40 Aligned_cols=129 Identities=28% Similarity=0.333 Sum_probs=104.5
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCceee-----------E
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--EKPRGGEVLLGEHNVL-----------P 490 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~--~~p~~G~i~~~~~~~~-----------~ 490 (554)
.++++|+++.|++..+++++||+|.+||+++|+||||||||||+++|+|+ ++|++|+|.++|.++. +
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 58999999999888899999999999999999999999999999999998 7899999999987541 4
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcc---c--CC----HHHHHHHHhhCCCChhhhccccCc-CChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAE---D--WR----IDDIKGLLGRCNFKADMLDRKVSL-LSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~---~--~~----~~~~~~~L~~~~l~~~~~~~~~~~-LSGGek~Rl~l 554 (554)
+|++|++ .+++..||.+++..... . .. ...+..+|+.+++..+..++++.. |||||||||+|
T Consensus 83 ~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~i 154 (250)
T 2d2e_A 83 FLAFQYP--VEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEI 154 (250)
T ss_dssp CCCCCCC--C-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHH
T ss_pred EEeccCC--ccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence 6889986 36678899999865321 1 11 245778999999965668899999 99999999975
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-24 Score=220.14 Aligned_cols=129 Identities=21% Similarity=0.367 Sum_probs=107.1
Q ss_pred ceEEEeeeeEecC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEE
Q 008771 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPN 491 (554)
Q Consensus 423 ~~l~~~~l~~~y~-~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~ 491 (554)
..|+++|++|.|+ +..+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~ 131 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG 131 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE
Confidence 3599999999995 46799999999999999999999999999999999999999999999999765 378
Q ss_pred EEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCCh----------hhhccccCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSGGek~Rl~l 554 (554)
|++|++ .++ ..||.|||..+.......++...+..+++.. ..+++++..|||||||||+|
T Consensus 132 ~v~Q~~--~lf-~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvai 201 (306)
T 3nh6_A 132 VVPQDT--VLF-NDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAI 201 (306)
T ss_dssp EECSSC--CCC-SEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHH
T ss_pred EEecCC--ccC-cccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHH
Confidence 999986 343 5699999998765555666667766666532 12345668999999999975
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-24 Score=215.80 Aligned_cols=131 Identities=27% Similarity=0.286 Sum_probs=108.1
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCcee-----------
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--EKPRGGEVLLGEHNV----------- 488 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~--~~p~~G~i~~~~~~~----------- 488 (554)
.+.|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+ ++|++|+|.++|.++
T Consensus 18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred CceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 4579999999999888899999999999999999999999999999999999 468999999998654
Q ss_pred eEEEEecccccCCCCCCCHHHHHHhhc-------c--cCC----HHHHHHHHhhCCCChhhhccccC-cCChhhhhcccC
Q 008771 489 LPNYFEQNQAEALDLDKTVLETVAEAA-------E--DWR----IDDIKGLLGRCNFKADMLDRKVS-LLSGGEKIILLY 554 (554)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~-------~--~~~----~~~~~~~L~~~~l~~~~~~~~~~-~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.+++.... . ... ...+..+|+.+++..+..++++. .|||||||||+|
T Consensus 98 ~i~~v~Q~~--~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~i 175 (267)
T 2zu0_C 98 GIFMAFQYP--VEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 175 (267)
T ss_dssp TEEEECSSC--CCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHH
T ss_pred CEEEEccCc--cccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence 167999986 4668889999986431 0 111 23577899999996556788887 599999999975
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-24 Score=216.22 Aligned_cols=128 Identities=24% Similarity=0.405 Sum_probs=104.5
Q ss_pred ceEEEeeeeEecCC---ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------e
Q 008771 423 SVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------L 489 (554)
Q Consensus 423 ~~l~~~~l~~~y~~---~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~ 489 (554)
..|+++|+++.|++ ..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999976 6799999999999999999999999999999999999999999999998765 2
Q ss_pred EEEEecccccCCCCCCCHHHHHHhhcccCCH-H---------HHHHHHhhC--CCChhhhccccCcCChhhhhcccC
Q 008771 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRI-D---------DIKGLLGRC--NFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~-~---------~~~~~L~~~--~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++|++. ++. .||.||+..+...... . .+..++..+ ++. +.+++++..|||||||||+|
T Consensus 95 i~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~~LSgGq~QRv~l 167 (271)
T 2ixe_A 95 VAAVGQEPL--LFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYD-TEVGETGNQLSGGQRQAVAL 167 (271)
T ss_dssp EEEECSSCC--CCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGG-SBCCGGGTTSCHHHHHHHHH
T ss_pred EEEEecCCc--ccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchh-hhhcCCcCCCCHHHHHHHHH
Confidence 689999863 444 5999999875432111 1 123456666 553 35688999999999999975
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-24 Score=213.37 Aligned_cols=126 Identities=20% Similarity=0.403 Sum_probs=103.9
Q ss_pred EEEeeeeEec-CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEEEE
Q 008771 425 VTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (554)
Q Consensus 425 l~~~~l~~~y-~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~y~ 493 (554)
|+++|+++.| ++..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence 7899999999 566799999999999999999999999999999999999999999999998654 25799
Q ss_pred ecccccCCCCCCCHHHHHHhh-cccCCHHHHHHHHhhCCCChhhh-----------ccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEA-AEDWRIDDIKGLLGRCNFKADML-----------DRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~-~~~~~~~~~~~~L~~~~l~~~~~-----------~~~~~~LSGGek~Rl~l 554 (554)
+|++. ++. .||.||+... ........+..++..+++.. .+ ++++..|||||||||+|
T Consensus 82 ~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~gl~~~~~~~~~~LSgGq~qrv~l 150 (243)
T 1mv5_A 82 SQDSA--IMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARS-FVENMPDQLNTEVGERGVKISGGQRQRLAI 150 (243)
T ss_dssp CCSSC--CCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTT-TTTSSTTGGGCEESTTSBCCCHHHHHHHHH
T ss_pred cCCCc--ccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHH-HHHhCccchhchhccCcCcCCHHHHHHHHH
Confidence 99863 444 5999999765 23344556777788777642 22 34678999999999975
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.90 E-value=6.9e-24 Score=209.63 Aligned_cols=123 Identities=24% Similarity=0.373 Sum_probs=106.5
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEEEE
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~y~ 493 (554)
+++++|+++. .+++++||+|.+||+++|+||||||||||+++|+|+++|+ |+|.++|.++ .++|+
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v 78 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYL 78 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEE
Confidence 6899999986 5899999999999999999999999999999999999999 9999998764 26899
Q ss_pred ecccccCCCCCCCHHHHHHhhcc-cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 494 EQNQAEALDLDKTVLETVAEAAE-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++ .+++..||.||+..... ......+..+|..+++. +..++++..|||||||||+|
T Consensus 79 ~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~l 137 (249)
T 2qi9_C 79 SQQQ--TPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRL 137 (249)
T ss_dssp CSCC--CCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHH
T ss_pred CCCC--ccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHH
Confidence 9986 36677899999986531 11356788999999994 56889999999999999875
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-27 Score=251.30 Aligned_cols=171 Identities=11% Similarity=0.106 Sum_probs=130.6
Q ss_pred eeeEEceeEEEECCC--------------------EEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-eEEEEec
Q 008771 110 VTVLKDVTWEVKKGE--------------------KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-KIAFLSQ 168 (554)
Q Consensus 110 ~~~l~~isl~i~~Ge--------------------~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-~i~~v~Q 168 (554)
+.+|++|||+|++|+ ++||+|+||||||||+|+|+|+++|++|+|.+++.+. +.+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 458999999999999 9999999999999999999999999999999887532 2378999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++ .++..|+.|+..... ...++.++++.+++
T Consensus 116 ~~-~~~~ltv~D~~g~~~------------------------------------------------~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 116 HP-NIPNVVFWDLPGIGS------------------------------------------------TNFPPDTYLEKMKF 146 (413)
T ss_dssp CS-SCTTEEEEECCCGGG------------------------------------------------SSCCHHHHHHHTTG
T ss_pred cc-ccCCeeehHhhcccc------------------------------------------------hHHHHHHHHHHcCC
Confidence 85 345667766532110 01134556677776
Q ss_pred CccccCCCCCCCChh--HHHHHHHHHHHcc----------CCCeEeecCCCCCCCHHHHHHHHHHHcc--------C---
Q 008771 249 TADDGDRLVASFSSG--WQMRMSLGKILLQ----------DPDLLLLDEPTNHLDLDTIEWLEGYLGK--------Q--- 305 (554)
Q Consensus 249 ~~~~~~~~~~~LSGG--qrqRv~LAraL~~----------~p~lLlLDEPt~~LD~~~~~~l~~~l~~--------~--- 305 (554)
... +..+. |||| |+||++||++|+. +|++|||||||++||+..+..+.+.+++ .
T Consensus 147 ~~~--~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~ 223 (413)
T 1tq4_A 147 YEY--DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA 223 (413)
T ss_dssp GGC--SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred Ccc--CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 432 23333 9999 9999999999999 9999999999999999877766554422 2
Q ss_pred -CCeEEEEecCHHH--HHhhcceEE-EeeCC
Q 008771 306 -DVPMVIISHDRAF--LDQLCTKIV-ETEMG 332 (554)
Q Consensus 306 -g~tvIiisHd~~~--l~~~~d~i~-~l~~g 332 (554)
..+|+++||++.. ++++||+|. .|..|
T Consensus 224 ~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 224 EPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp SCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 3578889999987 899999986 34444
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-28 Score=249.82 Aligned_cols=207 Identities=13% Similarity=0.123 Sum_probs=141.0
Q ss_pred hHhhhhhhhHHHHHHhhhHHHHhccCcchhhhhhhccccCCCCCCCCCccEEEEeEEEEeCCeeeEEceeEEEECCCEEE
Q 008771 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVG 127 (554)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~ 127 (554)
.+......+..++.+..+.+|+.+....+.+... .. .........|+++||+|.|+ .++|+++||+|++|++++
T Consensus 57 ~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~----~~-~~~~~~~~~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~va 130 (305)
T 2v9p_A 57 HVKDCATMVRHYLRAETQALSMPAYIKARCKLAT----GE-GSWKSILTFFNYQNIELITF-INALKLWLKGIPKKNCLA 130 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCC----SS-CCTHHHHHHHHHTTCCHHHH-HHHHHHHHHTCTTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC----CC-CcccccCCeEEEEEEEEEcC-hhhhccceEEecCCCEEE
Confidence 3444444555566666666666655433322110 00 00001123589999999998 779999999999999999
Q ss_pred EECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHH-HHHHhhHHHHHHHHHHHHHHHHHhhc
Q 008771 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVRE-EFMSAFKEEMEIAGKLERVQKALESA 206 (554)
Q Consensus 128 lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e-~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (554)
|+||||||||||+++|+|++ +|+|. +|++|++.++. .|+++ |+....
T Consensus 131 IvGpsGsGKSTLl~lL~gl~---~G~I~--------~~v~q~~~lf~-~ti~~~ni~~~~-------------------- 178 (305)
T 2v9p_A 131 FIGPPNTGKSMLCNSLIHFL---GGSVL--------SFANHKSHFWL-ASLADTRAALVD-------------------- 178 (305)
T ss_dssp EECSSSSSHHHHHHHHHHHH---TCEEE--------CGGGTTSGGGG-GGGTTCSCEEEE--------------------
T ss_pred EECCCCCcHHHHHHHHhhhc---CceEE--------EEecCcccccc-ccHHHHhhccCc--------------------
Confidence 99999999999999999999 89884 57788887654 47765 543210
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCC
Q 008771 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP 286 (554)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEP 286 (554)
+. ...+.+.++.+ ++. .++ ...|||||||| ||||+.+|+|||
T Consensus 179 --~~-------------------------~~~~~~~i~~~-L~~-gld--g~~LSgGqkQR---ARAll~~p~iLl---- 220 (305)
T 2v9p_A 179 --DA-------------------------THACWRYFDTY-LRN-ALD--GYPVSIDRKHK---AAVQIKAPPLLV---- 220 (305)
T ss_dssp --EE-------------------------CHHHHHHHHHT-TTG-GGG--TCCEECCCSSC---CCCEECCCCEEE----
T ss_pred --cc-------------------------cHHHHHHHHHH-hHc-cCC--ccCcCHHHHHH---HHHHhCCCCEEE----
Confidence 00 00111122221 111 112 57999999999 999999999999
Q ss_pred CCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 287 TNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 287 t~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
|++||+.+...+.. +||++..+ ..||+| +|++|++ .+.|+..++
T Consensus 221 Ts~LD~~~~~~i~~-----------ltH~~~~~-~~aD~i-vl~~G~i-v~~g~~~el 264 (305)
T 2v9p_A 221 TSNIDVQAEDRYLY-----------LHSRVQTF-RFEQPC-TDESGEQ-PFNITDADW 264 (305)
T ss_dssp EESSCSTTCGGGGG-----------GTTTEEEE-ECCCCC-CCC---C-CCCCCHHHH
T ss_pred ECCCCHHHHHHHHH-----------HhCCHHHH-HhCCEE-EEeCCEE-EEeCCHHHH
Confidence 99999998877652 29998876 579999 9999987 577887665
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-23 Score=204.42 Aligned_cols=124 Identities=24% Similarity=0.387 Sum_probs=98.6
Q ss_pred eEEEeeeeEecC--CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEecccccCC
Q 008771 424 VVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEAL 501 (554)
Q Consensus 424 ~l~~~~l~~~y~--~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l 501 (554)
.|+++|+++.|+ ++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++. +
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---~i~~v~q~~~--~ 80 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQFSW--I 80 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---CEEEECSSCC--C
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---EEEEEecCCc--c
Confidence 689999999995 46799999999999999999999999999999999999999999999987 4789999863 4
Q ss_pred CCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChh----------hhccccCcCChhhhhcccC
Q 008771 502 DLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 502 ~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSGGek~Rl~l 554 (554)
++ .||.||+..+.. .....+...+..+++... .+++++..|||||||||+|
T Consensus 81 ~~-~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~l 141 (229)
T 2pze_A 81 MP-GTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 141 (229)
T ss_dssp CS-BCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHH
T ss_pred cC-CCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHH
Confidence 44 499999987532 222233444555554211 1234568999999999874
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-24 Score=208.40 Aligned_cols=124 Identities=23% Similarity=0.366 Sum_probs=98.8
Q ss_pred eEEEeeeeEecC--CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEecccccCC
Q 008771 424 VVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEAL 501 (554)
Q Consensus 424 ~l~~~~l~~~y~--~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l 501 (554)
.|+++|+++.|+ ++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++. +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---~i~~v~Q~~~--~ 77 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---SVAYVPQQAW--I 77 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---CEEEECSSCC--C
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---EEEEEcCCCc--C
Confidence 489999999997 46799999999999999999999999999999999999999999999987 4789999862 4
Q ss_pred CCCCCHHHHHHhhcccCCHHHHHHHHhhCCCC------h----hhhccccCcCChhhhhcccC
Q 008771 502 DLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK------A----DMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 502 ~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~------~----~~~~~~~~~LSGGek~Rl~l 554 (554)
+..||.||+...... .......++..+++. + ..+++++..|||||||||+|
T Consensus 78 -~~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~l 138 (237)
T 2cbz_A 78 -QNDSLRENILFGCQL-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSL 138 (237)
T ss_dssp -CSEEHHHHHHTTSCC-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHH
T ss_pred -CCcCHHHHhhCcccc-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHH
Confidence 578999999875421 111223333333321 1 12468899999999999975
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=209.02 Aligned_cols=128 Identities=22% Similarity=0.333 Sum_probs=104.4
Q ss_pred ceEEEeeeeEecCC---ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------e
Q 008771 423 SVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------L 489 (554)
Q Consensus 423 ~~l~~~~l~~~y~~---~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~ 489 (554)
..|+++|+++.|++ +.+++++||+|.+||+++|+||||||||||+++|+|+++| +|+|.++|.++ .
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 35999999999975 3699999999999999999999999999999999999987 89999998655 2
Q ss_pred EEEEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChh----------hhccccCcCChhhhhcccC
Q 008771 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSGGek~Rl~l 554 (554)
++|++|++. ++ ..||.||+..+.......++...+..+++... .+++++..|||||||||+|
T Consensus 95 i~~v~Q~~~--l~-~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~l 166 (260)
T 2ghi_A 95 IGIVPQDTI--LF-NETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAI 166 (260)
T ss_dssp EEEECSSCC--CC-SEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHH
T ss_pred EEEEcCCCc--cc-ccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHH
Confidence 689999863 44 46999999875433345567777877776321 1246789999999999975
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-25 Score=223.18 Aligned_cols=173 Identities=18% Similarity=0.243 Sum_probs=133.8
Q ss_pred eCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------------eEEEEeccc
Q 008771 107 YKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------------KIAFLSQEF 170 (554)
Q Consensus 107 y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------------~i~~v~Q~~ 170 (554)
|+....++++||++++|++++|+|+||||||||+++|+|+++|++|+|.+.+.+. .|+|++|++
T Consensus 84 l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~ 163 (302)
T 3b9q_A 84 LAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEG 163 (302)
T ss_dssp HCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC-
T ss_pred hCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecC
Confidence 4433334678999999999999999999999999999999999999999877431 489999998
Q ss_pred c-cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 171 E-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 171 ~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
. .++..|+.+++..+.. . ..+ ..+++.+|+.
T Consensus 164 ~~~~~~~~v~e~l~~~~~----------------------------------------~--~~d------~~lldt~gl~ 195 (302)
T 3b9q_A 164 DKAKAATVLSKAVKRGKE----------------------------------------E--GYD------VVLCDTSGRL 195 (302)
T ss_dssp -CCCHHHHHHHHHHHHHH----------------------------------------T--TCS------EEEECCCCCS
T ss_pred CccCHHHHHHHHHHHHHH----------------------------------------c--CCc------chHHhcCCCC
Confidence 7 7777788887642100 0 000 1246677775
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCC--eEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEec---------CHHH
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH---------DRAF 318 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~--lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisH---------d~~~ 318 (554)
+ ..++++.+|| +||++|||||+.+|+ +|+|| ||++||+... +.++-+..|.|+|++|| .++.
T Consensus 196 ~-~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~--~~~~~~~~g~t~iiiThlD~~~~~g~~l~~ 268 (302)
T 3b9q_A 196 H-TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ--AREFNEVVGITGLILTKLDGSARGGCVVSV 268 (302)
T ss_dssp S-CCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH--HHHHHHHTCCCEEEEECCSSCSCTHHHHHH
T ss_pred c-chhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH--HHHHHHhcCCCEEEEeCCCCCCccChheeh
Confidence 3 4466778899 999999999999999 99999 9999999755 33333456899999999 6778
Q ss_pred HHhhcceEEEeeCCee
Q 008771 319 LDQLCTKIVETEMGVS 334 (554)
Q Consensus 319 l~~~~d~i~~l~~g~~ 334 (554)
+..+...|.++..|..
T Consensus 269 ~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 269 VEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHHCCCEEEEeCCCC
Confidence 8888889999998853
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-23 Score=215.82 Aligned_cols=126 Identities=20% Similarity=0.305 Sum_probs=108.3
Q ss_pred ceEEEeeeeEec--CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eE
Q 008771 423 SVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (554)
Q Consensus 423 ~~l~~~~l~~~y--~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~ 490 (554)
..|+++|+++.| ++..+++++||+|.+||+++|+|||||||||||++|+|+++ ++|+|.++|.++ .+
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCE
Confidence 459999999999 55679999999999999999999999999999999999998 899999998755 36
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCc-----------CChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL-----------LSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~-----------LSGGek~Rl~l 554 (554)
+|++|++ .+++ .||.+|+.... .....++..+|+.+++. +..+++|.. |||||||||+|
T Consensus 97 g~v~Q~~--~lf~-~tv~enl~~~~-~~~~~~v~~~l~~~~L~-~~~~~~p~~l~~~i~~~g~~LSGGqrQRval 166 (390)
T 3gd7_A 97 GVIPQKV--FIFS-GTFRKNLDPNA-AHSDQEIWKVADEVGLR-SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCL 166 (390)
T ss_dssp EEESCCC--CCCS-EEHHHHHCTTC-CSCHHHHHHHHHHTTCH-HHHTTSTTGGGCEECTTTTTSCHHHHHHHHH
T ss_pred EEEcCCc--ccCc-cCHHHHhhhcc-ccCHHHHHHHHHHhCCH-HHHhhcccccccccccccccCCHHHHHHHHH
Confidence 8999986 3544 69999996432 34566788999999994 578889988 99999999975
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8e-26 Score=217.45 Aligned_cols=174 Identities=10% Similarity=-0.012 Sum_probs=107.4
Q ss_pred eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcC------CCceEEEEecccccccCccHHHHHH
Q 008771 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK------SNMKIAFLSQEFEVSMSRTVREEFM 183 (554)
Q Consensus 110 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~------~~~~i~~v~Q~~~~~~~~tv~e~~~ 183 (554)
.++++| .+|++|++++|+||||||||||+|+|+|+++...+.+.+.+ ....++|+||++..++.+|+.+++.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 357787 79999999999999999999999999999963333222111 1124889999887665556555432
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH------hhhcCCCccccCCCC
Q 008771 184 SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL------MPELGFTADDGDRLV 257 (554)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~lgl~~~~~~~~~ 257 (554)
..... ..+ .... ........+++.+. ++.+|+. ...++++
T Consensus 87 ~~~~~--------------~~n----~~~~---------------g~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~ 132 (207)
T 1znw_A 87 EWAEI--------------HGG----LHRS---------------GTLAQPVRAAAATGVPVLIEVDLAGAR-AIKKTMP 132 (207)
T ss_dssp EEEEE--------------GGG----TEEE---------------EEEHHHHHHHHHHTCCEEEECCHHHHH-HHHHHCT
T ss_pred eehhh--------------cCc----hhhc---------------CCcHHHHHHHHHcCCeEEEEeCHHHHH-HHHHhcC
Confidence 10000 000 0000 00011122333333 4444542 3345667
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEeecCCCCCC----CHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcceEEEe
Q 008771 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHL----DLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVET 329 (554)
Q Consensus 258 ~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~L----D~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d~i~~l 329 (554)
..|| +|+.+|++++|||||+++ |+..+..+.++++ +.|.|+|+||||++++..+||+|++|
T Consensus 133 ~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 133 EAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp TSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC-
T ss_pred CcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHh
Confidence 7788 999999999999999998 6777777766543 35899999999999999999999988
Q ss_pred e
Q 008771 330 E 330 (554)
Q Consensus 330 ~ 330 (554)
.
T Consensus 202 ~ 202 (207)
T 1znw_A 202 T 202 (207)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=201.08 Aligned_cols=82 Identities=26% Similarity=0.407 Sum_probs=70.0
Q ss_pred ccCCCCCCCChhHHH------HHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 008771 252 DGDRLVASFSSGWQM------RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 252 ~~~~~~~~LSGGqrq------Rv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~ 322 (554)
..++++.+||||||| |+++|++|+.+|++|||||||++||+..+..|.++|++ .+.|||+||||.+ +..+
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~ 319 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDA 319 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGG
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHh
Confidence 346788999999999 67888999999999999999999999999998887753 4779999999966 5578
Q ss_pred cceEEEee--CCee
Q 008771 323 CTKIVETE--MGVS 334 (554)
Q Consensus 323 ~d~i~~l~--~g~~ 334 (554)
||+|++|+ +|..
T Consensus 320 ~d~~~~l~~~~g~s 333 (339)
T 3qkt_A 320 ADHVIRISLENGSS 333 (339)
T ss_dssp CSEEEEEEEETTEE
T ss_pred CCEEEEEEecCCcc
Confidence 99999985 4543
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-22 Score=221.45 Aligned_cols=128 Identities=23% Similarity=0.415 Sum_probs=107.9
Q ss_pred ceEEEeeeeEecCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eE
Q 008771 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (554)
Q Consensus 423 ~~l~~~~l~~~y~~--~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~ 490 (554)
..++++|++|.|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 46999999999974 6799999999999999999999999999999999999999999999999765 36
Q ss_pred EEEecccccCCCCCCCHHHHHHhhc-ccCCHHHHHHHHhhCCCChhhhc-----------cccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFKADMLD-----------RKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSGGek~Rl~l 554 (554)
+|++|++. ++ +.||.||+..+. +....+++.++++.+++. +.++ ++...||||||||++|
T Consensus 420 ~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~i 491 (582)
T 3b5x_A 420 ALVSQNVH--LF-NDTIANNIAYAAEGEYTREQIEQAARQAHAM-EFIENMPQGLDTVIGENGTSLSGGQRQRVAI 491 (582)
T ss_pred EEEcCCCc--cc-cccHHHHHhccCCCCCCHHHHHHHHHHCCCH-HHHHhCcccccchhcCCCCcCCHHHHHHHHH
Confidence 89999863 44 459999998765 445667788888888874 2333 4558999999999975
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-22 Score=220.87 Aligned_cols=128 Identities=27% Similarity=0.393 Sum_probs=108.4
Q ss_pred ceEEEeeeeEecCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eE
Q 008771 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (554)
Q Consensus 423 ~~l~~~~l~~~y~~--~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~ 490 (554)
..++++|++|.|++ +.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 45999999999973 6799999999999999999999999999999999999999999999999765 36
Q ss_pred EEEecccccCCCCCCCHHHHHHhhc-ccCCHHHHHHHHhhCCCChhhhc-----------cccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFKADMLD-----------RKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~L~~~~l~~~~~~-----------~~~~~LSGGek~Rl~l 554 (554)
+|++|++. ++. .||.||+..+. +....+++.+.++.+++. +.++ ++...|||||||||+|
T Consensus 420 ~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~i 491 (582)
T 3b60_A 420 ALVSQNVH--LFN-DTVANNIAYARTEEYSREQIEEAARMAYAM-DFINKMDNGLDTIIGENGVLLSGGQRQRIAI 491 (582)
T ss_dssp EEECSSCC--CCS-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCH-HHHHHSTTGGGSBCCTTSCSSCHHHHHHHHH
T ss_pred eEEccCCc--CCC-CCHHHHHhccCCCCCCHHHHHHHHHHcCCH-HHHHhccccccccccCCCCCCCHHHHHHHHH
Confidence 89999863 444 59999998765 445667788889888874 2333 3568999999999874
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-23 Score=218.42 Aligned_cols=165 Identities=19% Similarity=0.266 Sum_probs=132.2
Q ss_pred EceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------------eEEEEecccc-cccCc
Q 008771 114 KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------------KIAFLSQEFE-VSMSR 176 (554)
Q Consensus 114 ~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------------~i~~v~Q~~~-~~~~~ 176 (554)
..+||++++|++++|+|+||||||||++.|+|+++|++|+|.+.+.+. .|+|++|++. .++..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 568999999999999999999999999999999999999999876431 4899999987 77777
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCC
Q 008771 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (554)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (554)
++.+++..+.. . ..+ ..+++.+|+.+ ..++.
T Consensus 228 tv~e~l~~~~~----------------------------------------~--~~d------~~lldt~Gl~~-~~~~~ 258 (359)
T 2og2_A 228 VLSKAVKRGKE----------------------------------------E--GYD------VVLCDTSGRLH-TNYSL 258 (359)
T ss_dssp HHHHHHHHHHH----------------------------------------T--TCS------EEEEECCCCSS-CCHHH
T ss_pred hHHHHHHHHHh----------------------------------------C--CCH------HHHHHhcCCCh-hhhhH
Confidence 88887642100 0 000 12466777753 34667
Q ss_pred CCCCChhHHHHHHHHHHHccCCC--eEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEec---------CHHHHHhhcce
Q 008771 257 VASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH---------DRAFLDQLCTK 325 (554)
Q Consensus 257 ~~~LSGGqrqRv~LAraL~~~p~--lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisH---------d~~~l~~~~d~ 325 (554)
+.+|| +||++|||+|+.+|+ +|+|| ||++||+.... ..+-+..+.|+|++|| .++.+...+..
T Consensus 259 ~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~--~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~p 332 (359)
T 2og2_A 259 MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIP 332 (359)
T ss_dssp HHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH--HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCC
T ss_pred HHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH--HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCC
Confidence 78899 999999999999999 99999 99999997653 3333456899999999 57778778889
Q ss_pred EEEeeCCe
Q 008771 326 IVETEMGV 333 (554)
Q Consensus 326 i~~l~~g~ 333 (554)
|.++..|.
T Consensus 333 I~~ig~Ge 340 (359)
T 2og2_A 333 VKFIGVGE 340 (359)
T ss_dssp EEEEECSS
T ss_pred EEEEeCCC
Confidence 99998885
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-25 Score=227.20 Aligned_cols=180 Identities=8% Similarity=0.076 Sum_probs=129.3
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEE-----------------------EECCCEEEEECCCCccHHHHHHHHHCCCCCCc
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWE-----------------------VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~-----------------------i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~ 151 (554)
...|+++||++.|+ ++++++++. +++|+++||+|+||||||||+++|+|+++|+.
T Consensus 41 ~~~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~ 118 (312)
T 3aez_A 41 GEQIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWD 118 (312)
T ss_dssp TCCCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTST
T ss_pred CCeEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccC
Confidence 34589999999995 567777764 89999999999999999999999999999986
Q ss_pred eeEEEcCCCceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCC
Q 008771 152 GNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (554)
Q Consensus 152 G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (554)
|. ..|+||+|+..+++. |+.+|+..... . ...
T Consensus 119 G~-------~~v~~v~qd~~~~~~-t~~e~~~~~~~-----------------~-----------------------g~~ 150 (312)
T 3aez_A 119 HH-------PRVDLVTTDGFLYPN-AELQRRNLMHR-----------------K-----------------------GFP 150 (312)
T ss_dssp TC-------CCEEEEEGGGGBCCH-HHHHHTTCTTC-----------------T-----------------------TSG
T ss_pred CC-------CeEEEEecCccCCcc-cHHHHHHHHHh-----------------c-----------------------CCC
Confidence 64 358999999887666 88887531100 0 000
Q ss_pred cccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc-CCCeEE
Q 008771 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-QDVPMV 310 (554)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~-~g~tvI 310 (554)
.......+.++|+.++ . ...+..+..|||||+||+++|++++.+|+|||||||+..+|+.. ..+.+ .+ .+|
T Consensus 151 ~~~d~~~~~~~L~~l~-~-~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D-~~I 222 (312)
T 3aez_A 151 ESYNRRALMRFVTSVK-S-GSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFD-FSL 222 (312)
T ss_dssp GGBCHHHHHHHHHHHH-T-TCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCS-EEE
T ss_pred hHHHHHHHHHHHHHhC-C-CcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhcC-cEE
Confidence 0111234555666665 2 23346677999999999999999999999999999999998521 11222 33 457
Q ss_pred EEecCHHHHH-hhcceEEEeeCC
Q 008771 311 IISHDRAFLD-QLCTKIVETEMG 332 (554)
Q Consensus 311 iisHd~~~l~-~~~d~i~~l~~g 332 (554)
+|+|+.+... ..++|.+.+.++
T Consensus 223 ~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 223 YVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp EEEECHHHHHHHHHHHHHHHTTT
T ss_pred EEECCHHHHHHHHHHHHHHHHhc
Confidence 8888886643 345666555554
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.7e-24 Score=225.98 Aligned_cols=173 Identities=13% Similarity=0.160 Sum_probs=134.9
Q ss_pred ccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------
Q 008771 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------- 160 (554)
+.++++++++.|+ +..+|+++ |+|.+|++++|+|+||||||||+++|+|+.+|++|.|.+.|.+
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 5689999999997 67899999 9999999999999999999999999999999999999988762
Q ss_pred ----ceEEEEecc-cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccH
Q 008771 161 ----MKIAFLSQE-FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (554)
Q Consensus 161 ----~~i~~v~Q~-~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (554)
..|+|++|+ ...++..++.+|+..... . + ....
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae----------------------------~---~-------~~~~---- 246 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAE----------------------------D---F-------RDRG---- 246 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHH----------------------------H---H-------HTTT----
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHH----------------------------H---H-------HhCC----
Confidence 258999995 444456677766542100 0 0 0000
Q ss_pred HHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccC-------CC-
Q 008771 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ-------DV- 307 (554)
Q Consensus 236 ~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-------g~- 307 (554)
..++. ..+ .+..||+|| |||+|| +.+|++ |++||+.....+.+++.+. |.
T Consensus 247 ----~~v~~-------~ld-~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~Gsi 304 (438)
T 2dpy_A 247 ----QHVLL-------IMD-SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSI 304 (438)
T ss_dssp ----CEEEE-------EEE-CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEE
T ss_pred ----CCHHH-------HHH-hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcc
Confidence 00011 111 146799999 999999 888888 9999999999999888542 42
Q ss_pred ----eEEEEecCHHHHHhhcceEEEeeCCeee
Q 008771 308 ----PMVIISHDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 308 ----tvIiisHd~~~l~~~~d~i~~l~~g~~~ 335 (554)
||+++|||++ ..+||++++|.+|++.
T Consensus 305 T~~~tVlv~tHdl~--~~iad~v~~l~dG~Iv 334 (438)
T 2dpy_A 305 TAFYTVLTEGDDQQ--DPIADSARAILDGHIV 334 (438)
T ss_dssp EEEEEEECSSSCSC--CHHHHHHHHHSSEEEE
T ss_pred cceeEEEEeCCCcc--chhhceEEEEeCcEEE
Confidence 8999999999 6789999999999874
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-21 Score=200.90 Aligned_cols=84 Identities=18% Similarity=0.067 Sum_probs=74.0
Q ss_pred CCCCC-CCChhHHHHHHHHHHHc---------cCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhc
Q 008771 254 DRLVA-SFSSGWQMRMSLGKILL---------QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 254 ~~~~~-~LSGGqrqRv~LAraL~---------~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~ 323 (554)
++++. .||||||||++||++|+ .+|+||||||||++||+..+..|.+.+.+.+.|+|++||+ +. .|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence 55677 79999999999999999 8999999999999999999999999997766899999995 43 79
Q ss_pred ceEEEeeCCeeeeccCChh
Q 008771 324 TKIVETEMGVSRTYEGNYS 342 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~ 342 (554)
|+|++|++|++. ..|+..
T Consensus 335 ~~i~~l~~G~i~-~~g~~~ 352 (359)
T 2o5v_A 335 ALTLRAQAGRFT-PVADEE 352 (359)
T ss_dssp SEEEEEETTEEE-ECCCTT
T ss_pred CEEEEEECCEEE-ecCCHH
Confidence 999999999974 456544
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.1e-22 Score=218.36 Aligned_cols=129 Identities=28% Similarity=0.389 Sum_probs=107.1
Q ss_pred ceEEEeeeeEecCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eE
Q 008771 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (554)
Q Consensus 423 ~~l~~~~l~~~y~~--~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~ 490 (554)
.-++++|++|.|++ .++++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 35999999999964 4699999999999999999999999999999999999999999999999765 37
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChh----------hhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++ .++ +.||.||+..+.+....+++.+.++..++... .++++...|||||||||+|
T Consensus 418 ~~v~Q~~--~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~l 488 (578)
T 4a82_A 418 GLVQQDN--ILF-SDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSI 488 (578)
T ss_dssp EEECSSC--CCC-SSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHH
T ss_pred EEEeCCC--ccC-cccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHH
Confidence 8999986 354 45999999887665666777777777765221 1234557999999999974
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.6e-25 Score=213.45 Aligned_cols=170 Identities=14% Similarity=0.099 Sum_probs=103.4
Q ss_pred eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----------ceEEEEecccccccCccHH
Q 008771 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFLSQEFEVSMSRTVR 179 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----------~~i~~v~Q~~~~~~~~tv~ 179 (554)
.-|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ +.+ ..++|++|++.+++..+..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4799999999999999999999999999999999999 6 99988 432 2467888876543322100
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCC
Q 008771 180 EEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259 (554)
Q Consensus 180 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~ 259 (554)
..+ ++.. .+.+ ...+ .....+.++++...+. ..+ .+
T Consensus 87 ~~~--------------------l~~~----~~~~-------------~~~g--~~~~~i~~~l~~~~~~--il~---~~ 122 (218)
T 1z6g_A 87 EDF--------------------LEYD----NYAN-------------NFYG--TLKSEYDKAKEQNKIC--LFE---MN 122 (218)
T ss_dssp TCE--------------------EEEE----EETT-------------EEEE--EEHHHHHHHHHTTCEE--EEE---EC
T ss_pred cch--------------------hhhh----hccc-------------ccCC--CcHHHHHHHHhCCCcE--EEE---ec
Confidence 000 0000 0000 0000 0112334444443321 111 47
Q ss_pred CChhHHHHHHH-----HHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----------CCCeEEEEecCHHHHHhhcc
Q 008771 260 FSSGWQMRMSL-----GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----------QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 260 LSGGqrqRv~L-----AraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----------~g~tvIiisHd~~~l~~~~d 324 (554)
|||||+||++| +++|+.+|++++|||||+++|..+...+.+.+.. ...+.|+++||++.+...++
T Consensus 123 lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~ 202 (218)
T 1z6g_A 123 INGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLK 202 (218)
T ss_dssp HHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHH
Confidence 89999999999 8999999999999999999998776666555431 34567777777777776666
Q ss_pred eEEE
Q 008771 325 KIVE 328 (554)
Q Consensus 325 ~i~~ 328 (554)
+|+.
T Consensus 203 ~ii~ 206 (218)
T 1z6g_A 203 NYLL 206 (218)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8e-22 Score=198.96 Aligned_cols=122 Identities=24% Similarity=0.403 Sum_probs=84.8
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEecccccCCC
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~ 502 (554)
..|+++|+++.+ +.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++ .++
T Consensus 39 ~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g---~i~~v~Q~~--~l~ 111 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQNS--WIM 111 (290)
T ss_dssp -----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS---CEEEECSSC--CCC
T ss_pred ceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---EEEEEeCCC--ccC
Confidence 468999999864 4689999999999999999999999999999999999999999999987 478999986 344
Q ss_pred CCCCHHHHHHhhcccCCHHHHHHHHhhCCCChh----------hhccccCcCChhhhhcccC
Q 008771 503 LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 503 ~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSGGek~Rl~l 554 (554)
+ .||.||+. .. ......+...+..+++... .+++++..|||||||||+|
T Consensus 112 ~-~tv~enl~-~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~l 170 (290)
T 2bbs_A 112 P-GTIKENII-GV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 170 (290)
T ss_dssp S-SBHHHHHH-TT-CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHH
T ss_pred c-ccHHHHhh-Cc-ccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHH
Confidence 4 49999998 43 2223334445555555211 1234468999999999874
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-22 Score=219.92 Aligned_cols=128 Identities=23% Similarity=0.362 Sum_probs=106.9
Q ss_pred ceEEEeeeeEecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEE
Q 008771 423 SVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPN 491 (554)
Q Consensus 423 ~~l~~~~l~~~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~ 491 (554)
.-|+++|++|.|++ .++++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence 35999999999964 5799999999999999999999999999999999999999999999999766 378
Q ss_pred EEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccc-----------cCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRK-----------VSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~-----------~~~LSGGek~Rl~l 554 (554)
|++|++ .++ +.||.||+..+.+....+++.+.++.+++. +.+++. ...||||||||++|
T Consensus 433 ~v~Q~~--~lf-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~i 502 (598)
T 3qf4_B 433 IVLQDT--ILF-STTVKENLKYGNPGATDEEIKEAAKLTHSD-HFIKHLPEGYETVLTDNGEDLSQGQRQLLAI 502 (598)
T ss_dssp EECTTC--CCC-SSBHHHHHHSSSTTCCTTHHHHHTTTTTCH-HHHHTSTTGGGCBCHHHHTTSCHHHHHHHHH
T ss_pred EEeCCC--ccc-cccHHHHHhcCCCCCCHHHHHHHHHHhCCH-HHHHhccccccchhcCCCCCCCHHHHHHHHH
Confidence 999986 343 569999998765545556677888877763 233433 37999999999975
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-21 Score=208.84 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=69.2
Q ss_pred CCCCCC-ChhHHHHHHHHHHHccCC--CeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEEe
Q 008771 255 RLVASF-SSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (554)
Q Consensus 255 ~~~~~L-SGGqrqRv~LAraL~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~l 329 (554)
+++..| ||||+|||+||++|+.+| ++|||||||+|||+.+...+.+.|++ .|.|||+||||++++. .||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 567788 999999999999999999 99999999999999999988887753 2899999999999886 69999999
Q ss_pred eCC
Q 008771 330 EMG 332 (554)
Q Consensus 330 ~~g 332 (554)
+++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 655
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-21 Score=216.90 Aligned_cols=129 Identities=29% Similarity=0.371 Sum_probs=107.1
Q ss_pred ceEEEeeeeEecC--CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eE
Q 008771 423 SVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (554)
Q Consensus 423 ~~l~~~~l~~~y~--~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~ 490 (554)
..++++|++|.|+ ++++++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 4599999999995 35799999999999999999999999999999999999999999999999776 26
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCCh----------hhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++. ++ +.||+||+..+.+....+++...++..++.. ..+++++..||||||||++|
T Consensus 420 ~~v~Q~~~--lf-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~l 490 (587)
T 3qf4_A 420 SAVPQETV--LF-SGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSI 490 (587)
T ss_dssp EEECSSCC--CC-SEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHH
T ss_pred EEECCCCc--Cc-CccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHH
Confidence 89999863 43 4699999987765556666666666655421 13467789999999999975
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-22 Score=232.88 Aligned_cols=164 Identities=15% Similarity=0.132 Sum_probs=118.2
Q ss_pred CccEEEEe-----EEEEe-CCeeeEEceeEEEEC-------CCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc
Q 008771 95 SSGVKLEN-----ISKSY-KGVTVLKDVTWEVKK-------GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161 (554)
Q Consensus 95 ~~~i~~~~-----ls~~y-~~~~~l~~isl~i~~-------Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~ 161 (554)
.++|+++| |++.| ++..+++|++|++.+ |++++|+||||||||||||+| |++.+- .
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~----------a 816 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM----------A 816 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH----------H
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH----------h
Confidence 45699999 99999 667899999999987 999999999999999999999 998651 1
Q ss_pred eEE-EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 162 KIA-FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 162 ~i~-~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
++| ||||+.. ..+|.+++.
T Consensus 817 qiG~~Vpq~~~---~l~v~d~I~--------------------------------------------------------- 836 (1022)
T 2o8b_B 817 QMGCYVPAEVC---RLTPIDRVF--------------------------------------------------------- 836 (1022)
T ss_dssp TTTCCEESSEE---EECCCSBEE---------------------------------------------------------
T ss_pred heeEEeccCcC---CCCHHHHHH---------------------------------------------------------
Confidence 345 9999863 334443321
Q ss_pred HHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHH-HHH---HHHHHcc-CCCeEEEEecC
Q 008771 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT-IEW---LEGYLGK-QDVPMVIISHD 315 (554)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~-~~~---l~~~l~~-~g~tvIiisHd 315 (554)
..+|+. +...+..+++|+++++ +++|++++.+|+++||||||+|+|+.. ... +.+.+.+ .|.++|++||+
T Consensus 837 ---~rig~~-d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~ 911 (1022)
T 2o8b_B 837 ---TRLGAS-DRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHY 911 (1022)
T ss_dssp ---EECC----------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCC
T ss_pred ---HHcCCH-HHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 122322 1223344678888775 999999999999999999999999875 332 3344444 48999999999
Q ss_pred HHHHHhhcceEEEeeCCeee
Q 008771 316 RAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~ 335 (554)
++++..+||+++++. |++.
T Consensus 912 ~el~~~~~d~~~v~~-g~~~ 930 (1022)
T 2o8b_B 912 HSLVEDYSQNVAVRL-GHMA 930 (1022)
T ss_dssp HHHHHHTSSCSSEEE-EEEE
T ss_pred HHHHHHhCCcceeec-CeEE
Confidence 999999999998874 5553
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-23 Score=212.63 Aligned_cols=141 Identities=12% Similarity=0.137 Sum_probs=106.3
Q ss_pred EEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHH
Q 008771 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVR 179 (554)
Q Consensus 100 ~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~ 179 (554)
+++++| | .++++++||.|++|++++|+|+||||||||+++|+|+++|++|.|.++|... ..+....
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--------~~~~~~~--- 216 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--------IVFKHHK--- 216 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--------CCCSSCS---
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--------cccccch---
Confidence 445555 5 3489999999999999999999999999999999999999999999986431 0000000
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCC
Q 008771 180 EEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259 (554)
Q Consensus 180 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~ 259 (554)
..+++ +..
T Consensus 217 ----------------------------------------------------------------~~i~~--------~~g 224 (330)
T 2pt7_A 217 ----------------------------------------------------------------NYTQL--------FFG 224 (330)
T ss_dssp ----------------------------------------------------------------SEEEE--------ECB
T ss_pred ----------------------------------------------------------------hEEEE--------EeC
Confidence 00000 001
Q ss_pred CChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 260 LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
|||+||++||+||..+|++|||||||+. +..+.| +.+...+.|+|+++|+.+ +...||||++|.+|.
T Consensus 225 --gg~~~r~~la~aL~~~p~ilildE~~~~---e~~~~l-~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 225 --GNITSADCLKSCLRMRPDRIILGELRSS---EAYDFY-NVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp --TTBCHHHHHHHHTTSCCSEEEECCCCST---HHHHHH-HHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred --CChhHHHHHHHHhhhCCCEEEEcCCChH---HHHHHH-HHHhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 8999999999999999999999999982 333333 333333458999999999 557899999998774
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-22 Score=207.18 Aligned_cols=174 Identities=15% Similarity=0.198 Sum_probs=124.7
Q ss_pred ccEEEEeEEEEeC-CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-------------
Q 008771 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------- 161 (554)
Q Consensus 96 ~~i~~~~ls~~y~-~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~------------- 161 (554)
+.++++++++.|+ +..+++++ |+|.+|++++|+|+||||||||+++|+|+..|+.|.|.+.|.+.
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 4589999999997 67899999 99999999999999999999999999999999999988766431
Q ss_pred ----eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHH
Q 008771 162 ----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (554)
Q Consensus 162 ----~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (554)
.+.+++|... +..+.+...+ ..+
T Consensus 123 ~~~~~v~~~~~~~~-----~~~~r~~~~~--------------~~~---------------------------------- 149 (347)
T 2obl_A 123 TLSKCVLVVTTSDR-----PALERMKAAF--------------TAT---------------------------------- 149 (347)
T ss_dssp HHTTEEEEEECTTS-----CHHHHHHHHH--------------HHH----------------------------------
T ss_pred hhhceEEEEECCCC-----CHHHHHHHHH--------------HHH----------------------------------
Confidence 2444444211 1111110000 000
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc-----CCC-----
Q 008771 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-----QDV----- 307 (554)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~-----~g~----- 307 (554)
.+.+.+...|-.-...-..+..||+|| |||++| +.+|++ |+|||+.....+.+++.+ .|.
T Consensus 150 ~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~ 219 (347)
T 2obl_A 150 TIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIY 219 (347)
T ss_dssp HHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEE
T ss_pred HHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEE
Confidence 000000001100001113467899999 899999 688887 999999999999988854 255
Q ss_pred eEEEEecCHHHHHhhcceEEEeeCCeee
Q 008771 308 PMVIISHDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 308 tvIiisHd~~~l~~~~d~i~~l~~g~~~ 335 (554)
||+++|||++ ..+||+++.|.+|+++
T Consensus 220 tVl~~thdl~--~~i~d~v~~i~dG~Iv 245 (347)
T 2obl_A 220 TVLLESDNVN--DPIGDEVRSILDGHIV 245 (347)
T ss_dssp EEECCSSCCC--CHHHHHHHHHCSEEEE
T ss_pred EEEEeCCCCC--ChhhhheEEeeCcEEE
Confidence 8999999999 6789999999999874
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.5e-23 Score=205.72 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=89.7
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHH
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLE 197 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~ 197 (554)
.++||||||||||||+|+|+|+..|++|+|.++|.+ ..++|++|++.+++.+||.|++..+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~---------- 73 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQ---------- 73 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CC----------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhh----------
Confidence 479999999999999999999999999999987743 369999999988888899887643210
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccC
Q 008771 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277 (554)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~ 277 (554)
... ....+.+.+++. ....++.+.+|||||+||++||||++.
T Consensus 74 ---------~~~-----------------------~~~~~~i~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~- 115 (270)
T 3sop_A 74 ---------INN-----------------------ENCWEPIEKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC- 115 (270)
T ss_dssp ---------SBC-----------------------TTCSHHHHHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE-
T ss_pred ---------ccc-----------------------HHHHHHHHHHHH-----HHHHhhhHHhcCcccchhhhhheeeee-
Confidence 000 000000111111 011233346899999999999999886
Q ss_pred CCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 008771 278 PDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (554)
Q Consensus 278 p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l 319 (554)
+++||||+.+||+...+.+. .|++. .++|+|.|..+.+
T Consensus 116 --lllldep~~gL~~lD~~~l~-~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 116 --LYFISPTGHSLRPLDLEFMK-HLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp --EEEECCCSSSCCHHHHHHHH-HHHTT-SEEEEEETTGGGS
T ss_pred --eEEEecCCCcCCHHHHHHHH-HHHhc-CcEEEEEeccccC
Confidence 99999999999998865554 45455 8999998875443
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-21 Score=213.87 Aligned_cols=168 Identities=11% Similarity=0.099 Sum_probs=120.5
Q ss_pred EEEEeEEEEeCCeeeEEce-eEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCc
Q 008771 98 VKLENISKSYKGVTVLKDV-TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~i-sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~ 176 (554)
++++++++.|++ |+.+ +..|.+|++++|+|+||||||||+++|+|...|. |+ ..+.|++|++..
T Consensus 258 ~~~~~l~~g~~~---ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-------~vi~~~~ee~~~---- 322 (525)
T 1tf7_A 258 SSNVRVSSGVVR---LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-------RAILFAYEESRA---- 322 (525)
T ss_dssp CCCCEECCSCHH---HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-------CEEEEESSSCHH----
T ss_pred cccceeecChHH---HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-------CEEEEEEeCCHH----
Confidence 455566544432 2222 4589999999999999999999999999998875 43 114566666421
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCC
Q 008771 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (554)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (554)
.+..+.. .++. ..+ + +...|+. ...++.
T Consensus 323 ~l~~~~~---------------------------------------------~~g~-~~~----~-~~~~g~~-~~~~~~ 350 (525)
T 1tf7_A 323 QLLRNAY---------------------------------------------SWGM-DFE----E-MERQNLL-KIVCAY 350 (525)
T ss_dssp HHHHHHH---------------------------------------------TTSC-CHH----H-HHHTTSE-EECCCC
T ss_pred HHHHHHH---------------------------------------------HcCC-CHH----H-HHhCCCE-EEEEec
Confidence 1111100 0000 011 1 1123332 344677
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHH-----HHHHHHHH---HccCCCeEEEEecCH----------HH
Q 008771 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD-----TIEWLEGY---LGKQDVPMVIISHDR----------AF 318 (554)
Q Consensus 257 ~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~-----~~~~l~~~---l~~~g~tvIiisHd~----------~~ 318 (554)
+.+|||||+||+++|+++..+|++||+| ||++||.. .++.+.++ +++.|.|+|+|||+. .+
T Consensus 351 p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~ 429 (525)
T 1tf7_A 351 PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSH 429 (525)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSC
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcc
Confidence 8899999999999999999999999999 99999998 77766554 456799999999999 78
Q ss_pred HHhhcceEEEeeCCe
Q 008771 319 LDQLCTKIVETEMGV 333 (554)
Q Consensus 319 l~~~~d~i~~l~~g~ 333 (554)
+..+||+|++|+.|.
T Consensus 430 l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 430 ISTITDTIILLQYVE 444 (525)
T ss_dssp CTTTCSEEEEEEEEE
T ss_pred cceeeeEEEEEEEEE
Confidence 888999999998875
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-20 Score=213.49 Aligned_cols=147 Identities=20% Similarity=0.182 Sum_probs=113.3
Q ss_pred CccEEEEeEEEEe---CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-CCceeEEEcCCCceEEEEeccc
Q 008771 95 SSGVKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKSNMKIAFLSQEF 170 (554)
Q Consensus 95 ~~~i~~~~ls~~y---~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-p~~G~I~~~~~~~~i~~v~Q~~ 170 (554)
...|.+++...-+ ++..+++|+||+ |++++|+||||||||||+|+|+|+.. ++.|.+... ....+++++|
T Consensus 548 ~~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa-~~~~i~~v~~-- 621 (765)
T 1ewq_A 548 GDRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA-EEAHLPLFDG-- 621 (765)
T ss_dssp SSSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS-SEEEECCCSE--
T ss_pred CCcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeeh-hccceeeHHH--
Confidence 3458888875433 346799999999 99999999999999999999999874 678875422 2345777776
Q ss_pred ccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc
Q 008771 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (554)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (554)
++...++.+++.
T Consensus 622 -i~~~~~~~d~l~------------------------------------------------------------------- 633 (765)
T 1ewq_A 622 -IYTRIGASDDLA------------------------------------------------------------------- 633 (765)
T ss_dssp -EEEECCC------------------------------------------------------------------------
T ss_pred -hhccCCHHHHHH-------------------------------------------------------------------
Confidence 233344444321
Q ss_pred cccCCCCCCCChhHHHHHHHHHHH--ccCCCeEeecCC---CCCCCHHHHH-HHHHHHccCCCeEEEEecCHHHHHhhc
Q 008771 251 DDGDRLVASFSSGWQMRMSLGKIL--LQDPDLLLLDEP---TNHLDLDTIE-WLEGYLGKQDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~LAraL--~~~p~lLlLDEP---t~~LD~~~~~-~l~~~l~~~g~tvIiisHd~~~l~~~~ 323 (554)
..+|+|+++++.+|+++ +.+|+++||||| |++||..+.. .+.+.|.+.|.|+|++|||.++.. +|
T Consensus 634 -------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 634 -------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp --------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT-CC
T ss_pred -------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hh
Confidence 24799999999999999 999999999999 9999998864 577877767899999999998874 44
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-21 Score=194.19 Aligned_cols=180 Identities=22% Similarity=0.155 Sum_probs=109.9
Q ss_pred eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCce-eEEEcCCCceEEEEecccccccCccHHHHHHHhhHH
Q 008771 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE 188 (554)
Q Consensus 110 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G-~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~ 188 (554)
.++|+++++.|++|++++|+|+||||||||++.|+|...|++| .|.+ +..+. +..+ +...
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~---------~~~e~------~~~~-~~~r--- 82 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGL---------AMLEE------SVEE-TAED--- 82 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEE---------EESSS------CHHH-HHHH---
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEE---------EeCcC------CHHH-HHHH---
Confidence 3579999999999999999999999999999999999998877 5543 22221 1111 1000
Q ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhH-HHH
Q 008771 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW-QMR 267 (554)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq-rqR 267 (554)
+...... . +......+ . .. .+...+....+..+++..++. ....+..+|.++ +||
T Consensus 83 ----------~~~~~~~-~-~~~~~~~l-~-~~-------~~~~~~~~~~~~~~l~~~~l~---i~~~~~~~~~~~l~~~ 138 (296)
T 1cr0_A 83 ----------LIGLHNR-V-RLRQSDSL-K-RE-------IIENGKFDQWFDELFGNDTFH---LYDSFAEAETDRLLAK 138 (296)
T ss_dssp ----------HHHHHTT-C-CGGGCHHH-H-HH-------HHHHTHHHHHHHHHHSSSCEE---EECCCCSCCHHHHHHH
T ss_pred ----------HHHHHcC-C-Chhhcccc-c-cC-------CCCHHHHHHHHHHHhccCCEE---EECCCCCCCHHHHHHH
Confidence 0000000 0 00000000 0 00 001112233445555443331 223346789999 666
Q ss_pred HHHHHHHccCCCeEeecCCCC---C---CCH-HHHHHHHHHH----ccCCCeEEEEecCH--H-----------------
Q 008771 268 MSLGKILLQDPDLLLLDEPTN---H---LDL-DTIEWLEGYL----GKQDVPMVIISHDR--A----------------- 317 (554)
Q Consensus 268 v~LAraL~~~p~lLlLDEPt~---~---LD~-~~~~~l~~~l----~~~g~tvIiisHd~--~----------------- 317 (554)
+. |+++..+|++||+||||+ + +|. .....+.+.| ++.|.|||++||+. +
T Consensus 139 ~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~ 217 (296)
T 1cr0_A 139 LA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLR 217 (296)
T ss_dssp HH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC
T ss_pred HH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhc
Confidence 66 999999999999999999 4 454 4445555544 34699999999994 5
Q ss_pred ---HHHhhcceEEEeeCCe
Q 008771 318 ---FLDQLCTKIVETEMGV 333 (554)
Q Consensus 318 ---~l~~~~d~i~~l~~g~ 333 (554)
.+.++||+|++|+.|.
T Consensus 218 ~s~~i~~~aD~vi~L~~~~ 236 (296)
T 1cr0_A 218 GSGALRQLSDTIIALERNQ 236 (296)
T ss_dssp ---CHHHHCSEEEEEEEC-
T ss_pred ccHHhHhhCcEEEEEecCc
Confidence 7788999999998875
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.4e-21 Score=187.19 Aligned_cols=166 Identities=10% Similarity=0.075 Sum_probs=101.3
Q ss_pred CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHhhH
Q 008771 108 KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187 (554)
Q Consensus 108 ~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~ 187 (554)
+++++|+|+||++++|+++||+|+||||||||+++|+|++ |.+.++.....++|++|+. ++...|+.+++.....
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~ 84 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDR-FYKVLTAEQKAKALKG 84 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGG-GBCCCCHHHHHHHHTT
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCc-CccccCHhHhhhhhcc
Confidence 5667999999999999999999999999999999999976 4443332234689999995 5566788876532100
Q ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHH
Q 008771 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267 (554)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqR 267 (554)
. ....+. .......+.+.|+.+. ...++.+..||+||+||
T Consensus 85 ---------------~-~~~~~~---------------------~~~~~~~~~~~L~~l~---~~~~~~~~~ls~g~~~r 124 (245)
T 2jeo_A 85 ---------------Q-YNFDHP---------------------DAFDNDLMHRTLKNIV---EGKTVEVPTYDFVTHSR 124 (245)
T ss_dssp ---------------C-CCTTSG---------------------GGBCHHHHHHHHHHHH---TTCCEEECCEETTTTEE
T ss_pred ---------------C-CCCCCc---------------------ccccHHHHHHHHHHHH---CCCCeecccccccccCc
Confidence 0 000000 0000112223333321 12355678999999999
Q ss_pred HHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecC-HHHHHhhcceE
Q 008771 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHD-RAFLDQLCTKI 326 (554)
Q Consensus 268 v~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd-~~~l~~~~d~i 326 (554)
+++ ++++.+|+++|||||...+|.. +.+ -.+.+|+++||+ ......+++++
T Consensus 125 ~~~-~~~~~~~~~lilDg~~~~~~~~----l~~---~~~~~i~v~th~~~~~~r~~~r~~ 176 (245)
T 2jeo_A 125 LPE-TTVVYPADVVLFEGILVFYSQE----IRD---MFHLRLFVDTDSDVRLSRRVLRDV 176 (245)
T ss_dssp CSS-CEEECCCSEEEEECTTTTTSHH----HHT---TCSEEEEEECCHHHHHHHHHHHHT
T ss_pred cCc-eEEecCCCEEEEeCccccccHH----HHH---hcCeEEEEECCHHHHHHHHHHHHH
Confidence 988 6888999999999999888864 222 248899999997 44445555545
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-21 Score=195.27 Aligned_cols=141 Identities=19% Similarity=0.239 Sum_probs=107.9
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC-ceeEEEcCCCceEEEEecccccccCc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNMKIAFLSQEFEVSMSR 176 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-~G~I~~~~~~~~i~~v~Q~~~~~~~~ 176 (554)
++++++++. ++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.+ ++|++|+...+.
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~--i~~~~~~~~~~v-- 75 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP--IEYVFKHKKSIV-- 75 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS--CCSCCCCSSSEE--
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc--ceeecCCcceee--
Confidence 456666642 5899999 8999999999999999999999999999998 9999988754 345555421100
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCC
Q 008771 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (554)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (554)
. . ..+|+..
T Consensus 76 ------------------------------------------------------~-q----------~~~gl~~------ 84 (261)
T 2eyu_A 76 ------------------------------------------------------N-Q----------REVGEDT------ 84 (261)
T ss_dssp ------------------------------------------------------E-E----------EEBTTTB------
T ss_pred ------------------------------------------------------e-H----------HHhCCCH------
Confidence 0 0 1234321
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeC
Q 008771 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331 (554)
Q Consensus 257 ~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~ 331 (554)
..| |++||++|..+|++||||||| |+.+...+.+.. ..|.+|++++|+.+ +..+|||++.|..
T Consensus 85 -~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 85 -KSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred -HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 223 899999999999999999999 998877666554 45899999999988 4578999887754
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-21 Score=182.59 Aligned_cols=148 Identities=17% Similarity=0.162 Sum_probs=102.8
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCC--------CceEEEEecccccccCccHHHHHHHhhHHHHHHHH
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS--------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~--------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 194 (554)
|++++|+|+||||||||+++|+|+++ ++| |.++|. ...+||++|+..- ..+ +
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g--~~~---~------------- 60 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSG--TRG---P------------- 60 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETTS--CEE---E-------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEeccc--cee---h-------------
Confidence 78999999999999999999999998 899 877652 2358899887511 100 0
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCc------cccCCCCCCCChhHHHHH
Q 008771 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA------DDGDRLVASFSSGWQMRM 268 (554)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~------~~~~~~~~~LSGGqrqRv 268 (554)
+..+++.. ....++...+|+|||+++
T Consensus 61 ------------------------------------------------l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~ 92 (189)
T 2i3b_A 61 ------------------------------------------------LSRVGLEPPPGKRECRVGQYVVDLTSFEQLAL 92 (189)
T ss_dssp ------------------------------------------------EEECCCCCCSSSCCEESSSSEECHHHHHTTTT
T ss_pred ------------------------------------------------hhcccccCCccccccccceEEEcchHHHHHHH
Confidence 11111111 122344557999999988
Q ss_pred -HHHH---HHccCCCeEeecC--CCCCCCHHHHHHHHHHHccCCCeEE---EEecCH--HHHHhhcceEEEeeCCeeeec
Q 008771 269 -SLGK---ILLQDPDLLLLDE--PTNHLDLDTIEWLEGYLGKQDVPMV---IISHDR--AFLDQLCTKIVETEMGVSRTY 337 (554)
Q Consensus 269 -~LAr---aL~~~p~lLlLDE--Pt~~LD~~~~~~l~~~l~~~g~tvI---iisHd~--~~l~~~~d~i~~l~~g~~~~~ 337 (554)
+|++ |++.+|++||||| |++.+|....+.|.+++++...+|| .||||+ .|+++++ .+++|+++..
T Consensus 93 ~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~~~~vd~i~----~~~~~~i~~~ 168 (189)
T 2i3b_A 93 PVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIR----NRKDVKVFNV 168 (189)
T ss_dssp TTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCCTTHHHHH----TTCCSEEEEC
T ss_pred HHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCchHHHHHHe----ecCCcEEEEe
Confidence 4454 6899999999999 9999999999999999987644442 445997 5555444 4455554432
Q ss_pred -cCChh
Q 008771 338 -EGNYS 342 (554)
Q Consensus 338 -~G~~~ 342 (554)
..|.+
T Consensus 169 ~~~nr~ 174 (189)
T 2i3b_A 169 TKENRN 174 (189)
T ss_dssp CSSSGG
T ss_pred ChHhHH
Confidence 24544
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.79 E-value=7.4e-19 Score=187.48 Aligned_cols=75 Identities=19% Similarity=0.372 Sum_probs=66.4
Q ss_pred CCCCCCChhHHHHHHHHHHHc----cCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcceEE
Q 008771 255 RLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIV 327 (554)
Q Consensus 255 ~~~~~LSGGqrqRv~LAraL~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~d~i~ 327 (554)
+++..||||||||++||++|+ .+|++|||||||++||+..+..|.+++++ .+.++|+|||+..++ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 445679999999999999999 58999999999999999999999998864 367999999998776 5799999
Q ss_pred Eee
Q 008771 328 ETE 330 (554)
Q Consensus 328 ~l~ 330 (554)
.+.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-19 Score=205.68 Aligned_cols=153 Identities=17% Similarity=0.146 Sum_probs=107.5
Q ss_pred ccEEEEeEEEEe-----CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHH--------HCCCCCCceeEEEcCCCce
Q 008771 96 SGVKLENISKSY-----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRII--------AGQEEPDSGNVIKAKSNMK 162 (554)
Q Consensus 96 ~~i~~~~ls~~y-----~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i--------~G~~~p~~G~I~~~~~~~~ 162 (554)
..|.+++...-+ ++..+++|++|++.+|++++|+||||||||||||+| .|.+.|..+..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 347777765444 234689999999999999999999999999999999 66655543321
Q ss_pred EEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 008771 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (554)
Q Consensus 163 i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (554)
++++. .+
T Consensus 702 ~~~~d-------------------------------------------------------------------------~i 708 (934)
T 3thx_A 702 VSIVD-------------------------------------------------------------------------CI 708 (934)
T ss_dssp EECCS-------------------------------------------------------------------------EE
T ss_pred chHHH-------------------------------------------------------------------------HH
Confidence 11110 01
Q ss_pred hhhcCCCccccCCCCCCCChhHHHHHHHHHHH--ccCCCeEeecCCCCCCCHHHHHHH----HHHHcc-CCCeEEEEecC
Q 008771 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKIL--LQDPDLLLLDEPTNHLDLDTIEWL----EGYLGK-QDVPMVIISHD 315 (554)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL--~~~p~lLlLDEPt~~LD~~~~~~l----~~~l~~-~g~tvIiisHd 315 (554)
+..+|+. +.....+|+|+.+++.+|+++ +.+|+++||||||+|||+.....+ .+.+.+ .|.++|++||+
T Consensus 709 ~~~ig~~----d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~ 784 (934)
T 3thx_A 709 LARVGAG----DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF 784 (934)
T ss_dssp EEECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC
T ss_pred HHhcCch----hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc
Confidence 2222322 122346788888888888888 999999999999999999765444 344543 58999999999
Q ss_pred HHHHHhhcceEEEeeCCee
Q 008771 316 RAFLDQLCTKIVETEMGVS 334 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~ 334 (554)
.++. .+||++..+.+|++
T Consensus 785 ~el~-~lad~~~~v~ng~v 802 (934)
T 3thx_A 785 HELT-ALANQIPTVNNLHV 802 (934)
T ss_dssp GGGG-GGGGTCTTEEEEEE
T ss_pred HHHH-HHhcccceeEeeEE
Confidence 7765 68999888887765
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-19 Score=162.34 Aligned_cols=81 Identities=27% Similarity=0.407 Sum_probs=71.4
Q ss_pred cCCCCCCCChhHHHHHHHH------HHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhc
Q 008771 253 GDRLVASFSSGWQMRMSLG------KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 253 ~~~~~~~LSGGqrqRv~LA------raL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~g~tvIiisHd~~~l~~~~ 323 (554)
.++++.+||||||||++|| |||+.+|++|||||||++||+.++.++.+.+++ .|.|||+||||++ +..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhC
Confidence 4678999999999999876 899999999999999999999999999988754 3789999999995 56799
Q ss_pred ceEEEe--eCCee
Q 008771 324 TKIVET--EMGVS 334 (554)
Q Consensus 324 d~i~~l--~~g~~ 334 (554)
|+|++| ++|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 46654
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-20 Score=180.46 Aligned_cols=73 Identities=19% Similarity=0.250 Sum_probs=46.9
Q ss_pred CChhHH-HHHHHHHHHcc-------CCCeEeecCCCCCCCHH----------------HHHHHHHHHccCCCeEEEEec-
Q 008771 260 FSSGWQ-MRMSLGKILLQ-------DPDLLLLDEPTNHLDLD----------------TIEWLEGYLGKQDVPMVIISH- 314 (554)
Q Consensus 260 LSGGqr-qRv~LAraL~~-------~p~lLlLDEPt~~LD~~----------------~~~~l~~~l~~~g~tvIiisH- 314 (554)
++++++ +.+..+..++. +|++|+|||||++||+. ....|.++.++.|.|||+|||
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 344443 33555555544 99999999999999983 122233334456999999999
Q ss_pred ---CHHHHHhhcceEEEeeCC
Q 008771 315 ---DRAFLDQLCTKIVETEMG 332 (554)
Q Consensus 315 ---d~~~l~~~~d~i~~l~~g 332 (554)
+-..+..+||++++|++|
T Consensus 180 ~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 180 QANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp C---------CCSEEEEEEEC
T ss_pred ccCcchhhHhhceEEEEEEec
Confidence 555699999999999875
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-19 Score=207.17 Aligned_cols=152 Identities=13% Similarity=0.133 Sum_probs=99.7
Q ss_pred cEEEEeEEEEe-------CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-CceeEEEcCCCceEEEEec
Q 008771 97 GVKLENISKSY-------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKAKSNMKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y-------~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-~~G~I~~~~~~~~i~~v~Q 168 (554)
.|.+++...-+ ++..+++||||++++|++++|+||||||||||||+|+++.-. ..|.. +......++++.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~-vpa~~~~i~~~d- 717 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY-VPAEEATIGIVD- 717 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC-BSSSEEEEECCS-
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc-ccchhhhhhHHH-
Confidence 46777665433 245799999999999999999999999999999999754211 01100 000000111111
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
.++..+|+
T Consensus 718 ------------------------------------------------------------------------~i~~~ig~ 725 (918)
T 3thx_B 718 ------------------------------------------------------------------------GIFTRMGA 725 (918)
T ss_dssp ------------------------------------------------------------------------EEEEEC--
T ss_pred ------------------------------------------------------------------------HHHHhCCh
Confidence 01122222
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHH----HHH-ccCCCeEEEEecCHHHHHhhc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLE----GYL-GKQDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~----~~l-~~~g~tvIiisHd~~~l~~~~ 323 (554)
. +...+..+++|+||+|++.|+++ +.+|++|||||||+|||+.....+. +.+ ++.|.|+|++|||++++ .+|
T Consensus 726 ~-d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~ 802 (918)
T 3thx_B 726 A-DNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELE 802 (918)
T ss_dssp ---------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHH
T ss_pred H-HHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHH
Confidence 1 12234457899999999999999 8999999999999999998665543 334 34689999999998776 355
Q ss_pred ce
Q 008771 324 TK 325 (554)
Q Consensus 324 d~ 325 (554)
|+
T Consensus 803 ~~ 804 (918)
T 3thx_B 803 KN 804 (918)
T ss_dssp HH
T ss_pred hh
Confidence 53
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-17 Score=175.25 Aligned_cols=75 Identities=27% Similarity=0.426 Sum_probs=66.6
Q ss_pred CCCCCCChhHHHHH------HHHHHHccC-CCeEeecCCCCCCCHHHHHHHHHHHccC--CCeEEEEecCHHHHHhhcce
Q 008771 255 RLVASFSSGWQMRM------SLGKILLQD-PDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 255 ~~~~~LSGGqrqRv------~LAraL~~~-p~lLlLDEPt~~LD~~~~~~l~~~l~~~--g~tvIiisHd~~~l~~~~d~ 325 (554)
+++..|||||+||+ ++|++|+.+ |++|||||||++||+..+..+.+.|.+. +.+||+|||+++ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56789999999988 567899999 9999999999999999999999988653 469999999987 5689999
Q ss_pred EEEee
Q 008771 326 IVETE 330 (554)
Q Consensus 326 i~~l~ 330 (554)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.3e-21 Score=194.41 Aligned_cols=158 Identities=16% Similarity=0.133 Sum_probs=83.1
Q ss_pred EeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCC-CCCCceeEEEcCCC-------ceEEEEeccccc
Q 008771 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ-EEPDSGNVIKAKSN-------MKIAFLSQEFEV 172 (554)
Q Consensus 101 ~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~-~~p~~G~I~~~~~~-------~~i~~v~Q~~~~ 172 (554)
.||+++|+++.++++++|+| +|||+||+|||||+++|+|. ..|++| |.+.|.+ ..+++++|+...
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGV 74 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---C
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCc
Confidence 58899999999999999999 99999999999999999998 889998 6544321 236888888766
Q ss_pred ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccc
Q 008771 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (554)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 252 (554)
...+|+.|+...+... . . .. ....+...+. ..
T Consensus 75 ~~~ltv~Dt~g~~~~~--~---~--------~e-------------------------~~~~l~~~l~----------~~ 106 (301)
T 2qnr_A 75 KLRLTVVDTPGYGDAI--N---C--------RD-------------------------CFKTIISYID----------EQ 106 (301)
T ss_dssp CEEEEEEEEC-------------------------------------------------CTTHHHHHH----------HH
T ss_pred ccCcchhhhhhhhhhc--C---c--------HH-------------------------HHHHHHHHHH----------HH
Confidence 6666776654321000 0 0 00 0000000010 01
Q ss_pred cCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCC-CCHHHHHHHHHHHccCCCeEEEEecCHH
Q 008771 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNH-LDLDTIEWLEGYLGKQDVPMVIISHDRA 317 (554)
Q Consensus 253 ~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~-LD~~~~~~l~~~l~~~g~tvIiisHd~~ 317 (554)
.++++.++|||||||+.+|||++ +|++||||++ ||+...+.+..+-.+.+.++|+.+||+.
T Consensus 107 ~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 107 FERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 13445689999999999999986 9999999986 9998865444433335788999999974
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-20 Score=180.75 Aligned_cols=143 Identities=15% Similarity=0.071 Sum_probs=103.8
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccc--cCccHHHHHHHhhHHHHHHHHHHH
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS--MSRTVREEFMSAFKEEMEIAGKLE 197 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~--~~~tv~e~~~~~~~~~~~~~~~~~ 197 (554)
.++|+++||+|+||||||||+++|+|++.| .++|++|++.++ ...++.++....+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~---------- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE------------RVALLPMDHYYKDLGHLPLEERLRVNYD---------- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT----------
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC------------CeEEEecCccccCcccccHHHhcCCCCC----------
Confidence 578999999999999999999999998865 479999998665 34577665422110
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhH----HHHHHHHHH
Q 008771 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW----QMRMSLGKI 273 (554)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq----rqRv~LAra 273 (554)
.+......++.++++.+++.. ..++++.++|+|+ +||+++|++
T Consensus 61 --------------------------------~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~s~g~~~~~~~~~~~~~~ 107 (211)
T 3asz_A 61 --------------------------------HPDAFDLALYLEHAQALLRGL-PVEMPVYDFRAYTRSPRRTPVRPAPV 107 (211)
T ss_dssp --------------------------------SGGGBCHHHHHHHHHHHHTTC-CEEECCEETTTTEECSSCEEECCCSE
T ss_pred --------------------------------ChhhhhHHHHHHHHHHHHcCC-CcCCCcccCcccCCCCCeEEeCCCcE
Confidence 000011223444555555543 3456788999996 478899999
Q ss_pred HccCCCeEeecCCCCC-------CCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 008771 274 LLQDPDLLLLDEPTNH-------LDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (554)
Q Consensus 274 L~~~p~lLlLDEPt~~-------LD~~~~~~l~~~l~----~~g~tvIiisHd~~ 317 (554)
++.+|.++++||||++ ||+.....+.+.++ +.|.|+++++|+..
T Consensus 108 li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 108 VILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999 89877766666553 35889999999853
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.2e-18 Score=193.24 Aligned_cols=159 Identities=13% Similarity=0.047 Sum_probs=101.1
Q ss_pred ccEEEEeEEEEe-----CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-CCceeEEEcCCCceEEEEecc
Q 008771 96 SGVKLENISKSY-----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKSNMKIAFLSQE 169 (554)
Q Consensus 96 ~~i~~~~ls~~y-----~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-p~~G~I~~~~~~~~i~~v~Q~ 169 (554)
+.|.+++...-. ++..+++|++|+ ++|++++|+||||||||||+|+|+|+.. ...|.. +......+++++|
T Consensus 576 ~~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-vpa~~~~i~~~~~- 652 (800)
T 1wb9_A 576 PGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY-VPAQKVEIGPIDR- 652 (800)
T ss_dssp SCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-BSSSEEEECCCCE-
T ss_pred CCEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-cchhcccceeHHH-
Confidence 447777654222 345799999999 9999999999999999999999999743 223321 1111124555554
Q ss_pred cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
++...++.+++.
T Consensus 653 --i~~~~~~~d~l~------------------------------------------------------------------ 664 (800)
T 1wb9_A 653 --IFTRVGAADDLA------------------------------------------------------------------ 664 (800)
T ss_dssp --EEEEEC------------------------------------------------------------------------
T ss_pred --HHhhCCHHHHHH------------------------------------------------------------------
Confidence 223334433321
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHH----HHHHHHHcc-CCCeEEEEecCHHHHHhhcc
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI----EWLEGYLGK-QDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~----~~l~~~l~~-~g~tvIiisHd~~~l~~~~d 324 (554)
...+++|+++++ ++.+..++.+|+++|||||++|+|+... ..+.+.+.+ .|.++|++|||.++. .+||
T Consensus 665 -----~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d 737 (800)
T 1wb9_A 665 -----SGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPE 737 (800)
T ss_dssp ----------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHH
T ss_pred -----hhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhh
Confidence 112456777764 4445556899999999999888776432 234445555 589999999999876 4888
Q ss_pred eEEEeeCC
Q 008771 325 KIVETEMG 332 (554)
Q Consensus 325 ~i~~l~~g 332 (554)
++..+.++
T Consensus 738 ~~~~v~n~ 745 (800)
T 1wb9_A 738 KMEGVANV 745 (800)
T ss_dssp HSTTEEEE
T ss_pred hhhceEEE
Confidence 76444443
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-17 Score=162.05 Aligned_cols=163 Identities=13% Similarity=0.114 Sum_probs=103.8
Q ss_pred eeeEEceeE-EEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHhhHH
Q 008771 110 VTVLKDVTW-EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE 188 (554)
Q Consensus 110 ~~~l~~isl-~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~ 188 (554)
.+.|+++.. .|++|++++|+|+||||||||++.|++...+..|.|.+. ..+. +.. .+...+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~---------~~~~------~~~-~~~~~~-- 70 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV---------TTEE------SRD-SIIRQA-- 70 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE---------ESSS------CHH-HHHHHH--
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE---------Eccc------CHH-HHHHHH--
Confidence 456888887 899999999999999999999999999887776666542 2221 111 110000
Q ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH----HHHHhhhcCCCccccCCCCCCCChhH
Q 008771 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK----VSKLMPELGFTADDGDRLVASFSSGW 264 (554)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~lgl~~~~~~~~~~~LSGGq 264 (554)
. .+. ......... ++.....++ . . ......|.++
T Consensus 71 --------~----~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~-~-~---~~~~~~~~~~ 108 (235)
T 2w0m_A 71 --------K----QFN-------------------------WDFEEYIEKKLIIIDALMKEKE-D-Q---WSLVNLTPEE 108 (235)
T ss_dssp --------H----HTT-------------------------CCCGGGBTTTEEEEECCC-----C-T---TBCSSCCHHH
T ss_pred --------H----Hhc-------------------------chHHHHhhCCEEEEeccccccC-c-e---eeecCCCHHH
Confidence 0 000 000000000 000000001 0 0 1113459999
Q ss_pred HHHHHHHHHHccCCC--eEeecCCCCCC--CHHHHHHHHHHH----ccCCCeEEEEecCH--------HHHHhhcceEEE
Q 008771 265 QMRMSLGKILLQDPD--LLLLDEPTNHL--DLDTIEWLEGYL----GKQDVPMVIISHDR--------AFLDQLCTKIVE 328 (554)
Q Consensus 265 rqRv~LAraL~~~p~--lLlLDEPt~~L--D~~~~~~l~~~l----~~~g~tvIiisHd~--------~~l~~~~d~i~~ 328 (554)
.++...+.+...+|+ +||+||||+.+ |+.....+.+.| ++.|.|||++||+. ..+..+||+|++
T Consensus 109 ~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~ 188 (235)
T 2w0m_A 109 LVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIR 188 (235)
T ss_dssp HHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEE
T ss_pred HHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEE
Confidence 999888888888999 99999999888 986655555544 45799999999999 458889999999
Q ss_pred eeCC
Q 008771 329 TEMG 332 (554)
Q Consensus 329 l~~g 332 (554)
|+..
T Consensus 189 l~~~ 192 (235)
T 2w0m_A 189 FRRM 192 (235)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9764
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-18 Score=173.28 Aligned_cols=140 Identities=17% Similarity=0.174 Sum_probs=99.2
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------------eEEEEecccccccCccHHHHHHHh
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------------KIAFLSQEFEVSMSRTVREEFMSA 185 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------------~i~~v~Q~~~~~~~~tv~e~~~~~ 185 (554)
+|++++|+|+||||||||+++|+|+++|++|+|.+.+.+. .|+|++|++...+..++.+++..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999877531 488999998877777787776421
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHH
Q 008771 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265 (554)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqr 265 (554)
.. ... + ..+++..|+.+ .....++..++
T Consensus 181 ~~----------------------------------------~~~--d------~~llDt~G~~~----~~~~~~~eLs~ 208 (304)
T 1rj9_A 181 KA----------------------------------------RGY--D------LLFVDTAGRLH----TKHNLMEELKK 208 (304)
T ss_dssp HH----------------------------------------HTC--S------EEEECCCCCCT----TCHHHHHHHHH
T ss_pred Hh----------------------------------------CCC--C------EEEecCCCCCC----chHHHHHHHHH
Confidence 00 000 0 01234445431 11223455558
Q ss_pred HHHHHHHHHccCCC--eEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCH
Q 008771 266 MRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR 316 (554)
Q Consensus 266 qRv~LAraL~~~p~--lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~ 316 (554)
||++||||++.+|+ +|.|| |+++.+. .+.+..+.+..+.|+|++||+.
T Consensus 209 ~r~~iaRal~~~P~~~lLvLD-a~t~~~~--~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 209 VKRAIAKADPEEPKEVWLVLD-AVTGQNG--LEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHHHHHCTTCCSEEEEEEE-TTBCTHH--HHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHhhcCCCCeEEEEEc-HHHHHHH--HHHHHHHHHHcCCcEEEEECCc
Confidence 99999999999999 77777 6666543 3334444445589999999984
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-19 Score=196.60 Aligned_cols=152 Identities=20% Similarity=0.321 Sum_probs=90.6
Q ss_pred ccEEEEeEEEEeCC--eeeEEce----------eEEEECCCEEEEECCCCccHHHHHHHHHCCCCC-CceeEEEcCCC--
Q 008771 96 SGVKLENISKSYKG--VTVLKDV----------TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKAKSN-- 160 (554)
Q Consensus 96 ~~i~~~~ls~~y~~--~~~l~~i----------sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-~~G~I~~~~~~-- 160 (554)
+.+.++|+++.|+. +++|+.+ +|+++. +||||+||||||||+++|+|+..| ++|.|.++|.+
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 34789999999975 3455544 366654 999999999999999999999988 89999877643
Q ss_pred -----------ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHh
Q 008771 161 -----------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229 (554)
Q Consensus 161 -----------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (554)
..|+|++|++.+++..||.+++..+... +.
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~--------------~~------------------------- 126 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA--------------IA------------------------- 126 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH--------------HH-------------------------
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH--------------hc-------------------------
Confidence 2589999999888888888877432100 00
Q ss_pred CCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCC------CCCCCHHHHHHHHHHHc
Q 008771 230 VNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP------TNHLDLDTIEWLEGYLG 303 (554)
Q Consensus 230 ~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEP------t~~LD~~~~~~l~~~l~ 303 (554)
....++. ++++.++.+....|+++|+||| |++||+.....+.++++
T Consensus 127 -------------~~~~~~s---------------~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~ 178 (608)
T 3szr_A 127 -------------GEGMGIS---------------HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIK 178 (608)
T ss_dssp -------------CSSSCCC---------------SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHH
T ss_pred -------------CCccccc---------------hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHH
Confidence 0001111 1122333344568999999999 99999988777766654
Q ss_pred c-----CCCeEEEEecCHH
Q 008771 304 K-----QDVPMVIISHDRA 317 (554)
Q Consensus 304 ~-----~g~tvIiisHd~~ 317 (554)
+ .+.++++++||++
T Consensus 179 ~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 179 KYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHTTSSSCCEEEEEESSSC
T ss_pred HHHhcCCCCceEEEeccch
Confidence 3 3788999999976
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-16 Score=145.41 Aligned_cols=94 Identities=16% Similarity=0.264 Sum_probs=78.9
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHcc----CCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcce
Q 008771 252 DGDRLVASFSSGWQMRMSLGKILLQ----DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~LAraL~~----~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~ 325 (554)
...+.+..||||||||++||++|+. +|+++||||||++||+.+...+.+++++ .+.++|+|||+...+ ..||+
T Consensus 57 ~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~ 135 (173)
T 3kta_B 57 KDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADK 135 (173)
T ss_dssp SSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSE
T ss_pred ccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCE
Confidence 3456678999999999999999974 4699999999999999999999998864 367999999998766 68999
Q ss_pred EEEe--eCCeeeeccCChhHHHH
Q 008771 326 IVET--EMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 326 i~~l--~~g~~~~~~G~~~~~~~ 346 (554)
|+.+ ++|...++..++.++..
T Consensus 136 i~~v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 136 IIGVSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEEEEETTEEEEEECCHHHHHH
T ss_pred EEEEEecCCEEEEEEEEcHHHHH
Confidence 9855 68888777777776554
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-18 Score=166.23 Aligned_cols=180 Identities=11% Similarity=0.097 Sum_probs=95.7
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCC-----CCCceeEEEcCCC---ceEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE-----EPDSGNVIKAKSN---MKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~-----~p~~G~I~~~~~~---~~i~~v~Q 168 (554)
+|+++|++|.|+ .+++++ |.+.+|.+++|+|+||||||||++.|+|.. .|+.|.+...+.- ..+-++ .
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~-D 78 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV-D 78 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE-E
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE-E
Confidence 489999999997 467887 889999999999999999999999999998 7888876532100 001111 1
Q ss_pred cccccc-Cc--cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 169 EFEVSM-SR--TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 169 ~~~~~~-~~--tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
.+.... .. ...+.+.. .+......... .+..-++... .......+..+..++..
T Consensus 79 t~G~~~~~~~~~~~~~~~~----------~~~~~~~~~~~-~~~~~~v~d~------------~~~~~~~~~~~~~~~~~ 135 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQR----------ALGEYLEKRQS-LQGLVVLMDI------------RHPLKDLDQQMIEWAVD 135 (210)
T ss_dssp CCCCC------CCHHHHHH----------HHHHHHHHCTT-EEEEEEEEET------------TSCCCHHHHHHHHHHHH
T ss_pred CcCCcccccCHHHHHHHHH----------HHHHHHHhhhc-ccEEEEEEEC------------CCCCchhHHHHHHHHHH
Confidence 111100 00 00000000 00000000000 0000000000 00001122344555666
Q ss_pred cCCCccccCCCCCCCChhHHHH-HHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc
Q 008771 246 LGFTADDGDRLVASFSSGWQMR-MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqR-v~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 303 (554)
.+++......++..+|+||+|| +.++++++.+|.++++|||||++|..++..+.+.|.
T Consensus 136 ~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~ 194 (210)
T 1pui_A 136 SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 194 (210)
T ss_dssp TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHH
T ss_pred cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHH
Confidence 7776444456678899999999 899999999999999999999999988888877664
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-18 Score=180.65 Aligned_cols=161 Identities=15% Similarity=0.126 Sum_probs=97.7
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCce--eEEEcCC-C---ceEEEEec
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG--NVIKAKS-N---MKIAFLSQ 168 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G--~I~~~~~-~---~~i~~v~Q 168 (554)
.++|.++||+++|+++.+++++||+| +|||+||||||||+++|+|...|+.| .+.+... . ..++|++|
T Consensus 9 ~~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q 82 (418)
T 2qag_C 9 EGYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK 82 (418)
T ss_dssp ------CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--
T ss_pred cCcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe
Confidence 35689999999999889999999998 99999999999999999999875544 2211111 1 24788899
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
+..++..+||.|++...... .. . ..+ ..+.+.+.
T Consensus 83 ~~~~~~~Ltv~Dt~g~~~~~---------------~~----~--------------------~~~---~~i~~~i~---- 116 (418)
T 2qag_C 83 EGGVQLLLTIVDTPGFGDAV---------------DN----S--------------------NCW---QPVIDYID---- 116 (418)
T ss_dssp ----CEEEEEEECC--------------------------------------------------C---HHHHHHHH----
T ss_pred cCCcccceeeeechhhhhhc---------------cc----h--------------------hhH---HHHHHHHH----
Confidence 87776677887765321100 00 0 000 00000010
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCC---eEeecCCC-CCCCHHHHHHHHHHHccCCCeEEEEecCHHH
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPD---LLLLDEPT-NHLDLDTIEWLEGYLGKQDVPMVIISHDRAF 318 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~---lLlLDEPt-~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~ 318 (554)
..++.+++||++|||+++.+|+ +|++|||| ++||+....++. .|.. +.++|+|.|..+.
T Consensus 117 ---------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk-~L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 117 ---------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMK-RLHE-KVNIIPLIAKADT 179 (418)
T ss_dssp ---------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHH-HHTT-TSEEEEEEESTTS
T ss_pred ---------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHH-HHhc-cCcEEEEEEcccC
Confidence 1234566678999999999999 99999999 699998876664 4444 7889999887554
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-17 Score=171.60 Aligned_cols=139 Identities=16% Similarity=0.164 Sum_probs=98.5
Q ss_pred EeEEEEeC--CeeeEEceeE-------EEECCCEEEEECCCCccHHHHHHHHHCCCCCC-ceeEEEcCCCce------EE
Q 008771 101 ENISKSYK--GVTVLKDVTW-------EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNMK------IA 164 (554)
Q Consensus 101 ~~ls~~y~--~~~~l~~isl-------~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-~G~I~~~~~~~~------i~ 164 (554)
..++++|- ..+.|+++.+ .+.+|++++|+||||||||||+++|+|+++|+ .|.|...+.+.. .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~ 171 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKC 171 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcccc
Confidence 45566652 2345667666 67889999999999999999999999999987 566643322110 01
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
+++|..
T Consensus 172 ~v~q~~-------------------------------------------------------------------------- 177 (356)
T 3jvv_A 172 LVNQRE-------------------------------------------------------------------------- 177 (356)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred ceeeee--------------------------------------------------------------------------
Confidence 111110
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcc
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d 324 (554)
++ ...++-.+ +||+||..+|++||+|||| |.++.+.+.+.. ..|.+||+++|+.+.+ ..||
T Consensus 178 -~~---------~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~~~~~~-~~G~~vl~t~H~~~~~-~~~d 238 (356)
T 3jvv_A 178 -VH---------RDTLGFSE----ALRSALREDPDIILVGEMR---DLETIRLALTAA-ETGHLVFGTLHTTSAA-KTID 238 (356)
T ss_dssp -BT---------TTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEESCSSHH-HHHH
T ss_pred -ec---------cccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHH-hcCCEEEEEEccChHH-HHHH
Confidence 00 01122222 9999999999999999999 788877766654 3589999999999988 6799
Q ss_pred eEEEeeCC
Q 008771 325 KIVETEMG 332 (554)
Q Consensus 325 ~i~~l~~g 332 (554)
|++.|..|
T Consensus 239 Rli~l~~~ 246 (356)
T 3jvv_A 239 RVVDVFPA 246 (356)
T ss_dssp HHHHTSCH
T ss_pred HHhhhcCc
Confidence 99887543
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-16 Score=157.65 Aligned_cols=146 Identities=17% Similarity=0.172 Sum_probs=90.9
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCC----CceEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
|++|++++|+|+||||||||++.|++... .|.+.+ |. ...+.|+..+.. . +.+.. .
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~-g~~~~~~~~v~~~~~e~~------~-~~~~~----------r 86 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLL-EVGELPTGPVIYLPAEDP------P-TAIHH----------R 86 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTT-CCCCCCCCCEEEEESSSC------H-HHHHH----------H
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcC-CCccCCCccEEEEECCCC------H-HHHHH----------H
Confidence 78999999999999999999999998654 454432 21 124667654421 1 11100 0
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 275 (554)
+.. +. ... .......+++.+++.. ..++++..||+||.+++ ++++
T Consensus 87 ~~~----~g-------------------------~~~--~~~~~~~~~~~l~l~~-~~~~~~~~ls~g~~~~i---~~l~ 131 (279)
T 1nlf_A 87 LHA----LG-------------------------AHL--SAEERQAVADGLLIQP-LIGSLPNIMAPEWFDGL---KRAA 131 (279)
T ss_dssp HHH----HH-------------------------TTS--CHHHHHHHHHHEEECC-CTTSCCCTTSHHHHHHH---HHHH
T ss_pred HHH----HH-------------------------hhc--ChhhhhhccCceEEee-cCCCCcccCCHHHHHHH---HHhc
Confidence 000 00 000 0112334455566543 34677899999997765 6788
Q ss_pred cCCCeEeecCCCC--CCCHHH---HHHHHHH----HccCCCeEEEEecCHHHHH
Q 008771 276 QDPDLLLLDEPTN--HLDLDT---IEWLEGY----LGKQDVPMVIISHDRAFLD 320 (554)
Q Consensus 276 ~~p~lLlLDEPt~--~LD~~~---~~~l~~~----l~~~g~tvIiisHd~~~l~ 320 (554)
.+|++||+||||+ ++|... ...+.+. .++.|.|||+|+|+.....
T Consensus 132 ~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 132 EGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp TTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred CCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCccc
Confidence 8999999999999 999732 2333333 3456999999999987664
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.3e-17 Score=168.94 Aligned_cols=152 Identities=16% Similarity=0.159 Sum_probs=90.4
Q ss_pred eeEEce-eEEEECCCEEEEECCCCccHHHHHHHHHCCC--CCCc----ee-EEEcCCCc----eEEEEecccccccCccH
Q 008771 111 TVLKDV-TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDS----GN-VIKAKSNM----KIAFLSQEFEVSMSRTV 178 (554)
Q Consensus 111 ~~l~~i-sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p~~----G~-I~~~~~~~----~i~~v~Q~~~~~~~~tv 178 (554)
+.|+.+ ++.|++|++++|+|+||||||||++.|++.. +|++ |. |++++... ++++++|.+.+++
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~---- 193 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDP---- 193 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCH----
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCH----
Confidence 456665 6899999999999999999999999999998 6776 46 55554321 1111111111100
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCC
Q 008771 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (554)
Q Consensus 179 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~ 258 (554)
..+++.+-+. + .
T Consensus 194 -------------------------------------------------------------~~v~~ni~~~-----~--~ 205 (349)
T 1pzn_A 194 -------------------------------------------------------------DEVLKHIYVA-----R--A 205 (349)
T ss_dssp -------------------------------------------------------------HHHGGGEEEE-----E--C
T ss_pred -------------------------------------------------------------HHHhhCEEEE-----e--c
Confidence 0111111110 0 0
Q ss_pred CCChhHHHHHHHHHHHc-------cCCCeEeecCCCCCCCHHH------------HHHHHHH----HccCCCeEEEEecC
Q 008771 259 SFSSGWQMRMSLGKILL-------QDPDLLLLDEPTNHLDLDT------------IEWLEGY----LGKQDVPMVIISHD 315 (554)
Q Consensus 259 ~LSGGqrqRv~LAraL~-------~~p~lLlLDEPt~~LD~~~------------~~~l~~~----l~~~g~tvIiisHd 315 (554)
.-|.+++|++.++++++ .+|++||+||||++||+.. ...+... .++++.|||+++|+
T Consensus 206 ~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~ 285 (349)
T 1pzn_A 206 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 285 (349)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccc
Confidence 12577888888888888 6899999999999999852 2333333 34579999999999
Q ss_pred HHHHHhhcceEEEeeCCee
Q 008771 316 RAFLDQLCTKIVETEMGVS 334 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~ 334 (554)
.......++.+.....|.+
T Consensus 286 ~~~~~~~~~~~~~~~~G~~ 304 (349)
T 1pzn_A 286 QARPDAFFGDPTRPIGGHI 304 (349)
T ss_dssp C---------------CCC
T ss_pred ccccccccCCccccCCcce
Confidence 8766544444445555543
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-15 Score=144.26 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=56.4
Q ss_pred CCChhH--HHHHHHHHHHccC-CCeEeecCCCCCCCHHH--------HHH----HHHHHccCCCeEEEEecCHH------
Q 008771 259 SFSSGW--QMRMSLGKILLQD-PDLLLLDEPTNHLDLDT--------IEW----LEGYLGKQDVPMVIISHDRA------ 317 (554)
Q Consensus 259 ~LSGGq--rqRv~LAraL~~~-p~lLlLDEPt~~LD~~~--------~~~----l~~~l~~~g~tvIiisHd~~------ 317 (554)
.+|+++ +++++.+++++.+ |+++|+||||+.+|... ... |.++.++.+.|+|+++|...
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~ 163 (220)
T 2cvh_A 84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEM 163 (220)
T ss_dssp CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSS
T ss_pred ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCc
Confidence 445554 5688888999986 99999999999999632 122 33334556899999999875
Q ss_pred -------HHHhhcceEEEeeCC
Q 008771 318 -------FLDQLCTKIVETEMG 332 (554)
Q Consensus 318 -------~l~~~~d~i~~l~~g 332 (554)
.+..+||+|++|+..
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 677899999999754
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.3e-16 Score=151.62 Aligned_cols=128 Identities=12% Similarity=0.149 Sum_probs=84.6
Q ss_pred eEEEECCCEEEEECCCCccHHHHHHHHHCCCCC--CceeEEEcCCC------ceEEEEecccccccCccHHHHHHHhhHH
Q 008771 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSN------MKIAFLSQEFEVSMSRTVREEFMSAFKE 188 (554)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p--~~G~I~~~~~~------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~ 188 (554)
.-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.. ..++|+||++..+..+++...|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f------ 83 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAF------ 83 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCE------
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHH------
Confidence 346789999999999999999999999999986 68988876543 2477888875433222210000
Q ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHH
Q 008771 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268 (554)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv 268 (554)
++.+.+. ..+.|-.++.
T Consensus 84 ------------------------------------------------------~E~~~~~--------~~~yg~~~~~- 100 (219)
T 1s96_A 84 ------------------------------------------------------LEHAEVF--------GNYYGTSREA- 100 (219)
T ss_dssp ------------------------------------------------------EEEEEET--------TEEEEEEHHH-
T ss_pred ------------------------------------------------------HHHHHHH--------hccCCCCHHH-
Confidence 0000000 0011111221
Q ss_pred HHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHh
Q 008771 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 269 ~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~ 321 (554)
+..++..++++||| ||+.+...+.+.+. .+.||+++||+++.+.+
T Consensus 101 --v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 101 --IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFILPPSKIELDR 145 (219)
T ss_dssp --HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEEECSSHHHHHH
T ss_pred --HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEEECCCHHHHHH
Confidence 33445568999999 99999999999887 58999999999999875
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.9e-16 Score=161.71 Aligned_cols=123 Identities=22% Similarity=0.278 Sum_probs=91.6
Q ss_pred eEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCC-ceeEEEcCCCc------eEEEEecccccccCccHHHHHHH
Q 008771 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNM------KIAFLSQEFEVSMSRTVREEFMS 184 (554)
Q Consensus 112 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-~G~I~~~~~~~------~i~~v~Q~~~~~~~~tv~e~~~~ 184 (554)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.+. .++|++|.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~--------------- 189 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR--------------- 189 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE---------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee---------------
Confidence 566665 7899999999999999999999999999998 89996644321 11222221
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhH
Q 008771 185 AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264 (554)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq 264 (554)
.+|+. +..|
T Consensus 190 ------------------------------------------------------------~~g~~-------~~~~---- 198 (372)
T 2ewv_A 190 ------------------------------------------------------------EVGED-------TKSF---- 198 (372)
T ss_dssp ------------------------------------------------------------EBTTT-------BSCS----
T ss_pred ------------------------------------------------------------ecCCC-------HHHH----
Confidence 12221 2345
Q ss_pred HHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEe
Q 008771 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329 (554)
Q Consensus 265 rqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l 329 (554)
+.+|+++|..+|++||+|||+ |++....+.+.. ..|.++|.++|+.+ +..+|||++.|
T Consensus 199 --~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 199 --ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp --HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred --HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEECcch-HHHHHHHHHHh
Confidence 469999999999999999999 887766555544 45889999999966 56678887655
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.5e-16 Score=162.03 Aligned_cols=144 Identities=12% Similarity=0.122 Sum_probs=105.2
Q ss_pred EEEeEEEE---eCC--eeeE---------EceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---
Q 008771 99 KLENISKS---YKG--VTVL---------KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--- 161 (554)
Q Consensus 99 ~~~~ls~~---y~~--~~~l---------~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~--- 161 (554)
++++++|+ |++ ..+| +++||.|++|++++|+|+||||||||+++|+|+++|++|.|.+++...
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~ 216 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFL 216 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCc
Confidence 67888888 753 3455 999999999999999999999999999999999999999999986321
Q ss_pred -----eEEEEe-cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccH
Q 008771 162 -----KIAFLS-QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (554)
Q Consensus 162 -----~i~~v~-Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (554)
.++|++ |+..
T Consensus 217 ~~~~~~v~~v~~q~~~---------------------------------------------------------------- 232 (361)
T 2gza_A 217 PDHPNHVHLFYPSEAK---------------------------------------------------------------- 232 (361)
T ss_dssp TTCSSEEEEECC--------------------------------------------------------------------
T ss_pred cccCCEEEEeecCccc----------------------------------------------------------------
Confidence 233333 2210
Q ss_pred HHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecC
Q 008771 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHD 315 (554)
Q Consensus 236 ~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd 315 (554)
..++++..++..|+.++..+|+.+++|||... ...+.+ +.+..-..|++.++|+
T Consensus 233 ----------------------~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~---~~~~~l-~~l~~g~~~~l~t~H~ 286 (361)
T 2gza_A 233 ----------------------EEENAPVTAATLLRSCLRMKPTRILLAELRGG---EAYDFI-NVAASGHGGSITSCHA 286 (361)
T ss_dssp ----------------------------CCHHHHHHHHTTSCCSEEEESCCCST---HHHHHH-HHHHTTCCSCEEEEEC
T ss_pred ----------------------cccccccCHHHHHHHHHhcCCCEEEEcCchHH---HHHHHH-HHHhcCCCeEEEEECC
Confidence 01134456788899999999999999999963 333333 3333334578999999
Q ss_pred HHHHHhhcceEEEeeCCe
Q 008771 316 RAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~ 333 (554)
.+ +...++|++.+..+.
T Consensus 287 ~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 287 GS-CELTFERLALMVLQN 303 (361)
T ss_dssp SS-HHHHHHHHHHHHTTS
T ss_pred CC-HHHHHHHHHHHHhcc
Confidence 76 667899999887663
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=6e-16 Score=162.85 Aligned_cols=178 Identities=16% Similarity=0.120 Sum_probs=106.6
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCE--EEEECCCCccHHHHHHHHHCCCCCCceeEEEc---C-CCceEEEEecccc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEK--VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA---K-SNMKIAFLSQEFE 171 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~--~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~---~-~~~~i~~v~Q~~~ 171 (554)
+++++ ++.|++.+ |+++||+|++|++ ++|||+||||||||+++|+|+.- .|..... + ....++|++|++.
T Consensus 17 l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~~~ 92 (427)
T 2qag_B 17 VPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQESN 92 (427)
T ss_dssp CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC--
T ss_pred EEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeecCc
Confidence 66777 88998888 9999999999999 99999999999999999999852 2211110 0 0125899999988
Q ss_pred cccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhc-CCCc
Q 008771 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL-GFTA 250 (554)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gl~~ 250 (554)
+++.+||.+++..+...... ..... + ...+..++..+|... ++..
T Consensus 93 l~~~ltv~D~~~~g~~~~~~--~~~~~--------------i------------------~~~i~~q~~~~L~e~~~i~r 138 (427)
T 2qag_B 93 VRLKLTIVSTVGFGDQINKE--DSYKP--------------I------------------VEFIDAQFEAYLQEELKIRR 138 (427)
T ss_dssp CEEEEEEEEEECCCC-CCHH--HHSHH--------------H------------------HHHHHHHHHHHHHHC--CCC
T ss_pred cccccchhhhhhhhhccccc--hhhhH--------------H------------------HHHHHHHHHHHHHHHHhhhh
Confidence 77777887776432110000 00000 0 001222333333332 3221
Q ss_pred ---cccCCCC-----------CCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHH----HccCCCeEEEE
Q 008771 251 ---DDGDRLV-----------ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY----LGKQDVPMVII 312 (554)
Q Consensus 251 ---~~~~~~~-----------~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~----l~~~g~tvIii 312 (554)
...+..+ +.|+-.. +.|+++|..+++|+++|||+..|.+.....+.+. |+..|.+|+++
T Consensus 139 ~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~i 215 (427)
T 2qag_B 139 VLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQF 215 (427)
T ss_dssp CCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCC
T ss_pred hhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEec
Confidence 0011111 2455555 7999999999999999999999999877666544 55679999999
Q ss_pred ecCH
Q 008771 313 SHDR 316 (554)
Q Consensus 313 sHd~ 316 (554)
|.|-
T Consensus 216 s~~d 219 (427)
T 2qag_B 216 PTDD 219 (427)
T ss_dssp C---
T ss_pred CCCc
Confidence 9763
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-18 Score=179.01 Aligned_cols=165 Identities=13% Similarity=0.097 Sum_probs=97.1
Q ss_pred eEEceeEEEEC--CCEEEEECCCCccHHHHHHHHHCCCCCCc----eeEEEcCCCceEEEEecccccccCccHHHHHHHh
Q 008771 112 VLKDVTWEVKK--GEKVGLVGVNGAGKTTQLRIIAGQEEPDS----GNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185 (554)
Q Consensus 112 ~l~~isl~i~~--Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~----G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~ 185 (554)
+.+.|+++|.+ |++++|+|+||||||||+++|+|+++|++ |+|.+++... ..+.. ...... +++...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~-----~~~~~-~~~~~~-~~I~~~ 229 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLG-----GDEQA-MQYSDY-PQMALG 229 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSS-----SCTTS-SCTTTH-HHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcC-----CCccc-CChhHH-HHHHHH
Confidence 35679999999 99999999999999999999999999999 7766532100 00010 011112 222211
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHH
Q 008771 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265 (554)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqr 265 (554)
...... + ...+.+-+..++. ...+..+..+|+|++
T Consensus 230 ~q~~~~----------------------------~---------------~~t~~~nl~~~~~--~~~~~~~~~~~~~~~ 264 (365)
T 1lw7_A 230 HQRYID----------------------------Y---------------AVRHSHKIAFIDT--DFITTQAFCIQYEGK 264 (365)
T ss_dssp HHHHHH----------------------------H---------------HHHHCSSEEEESS--CHHHHHHHHHHHHSC
T ss_pred HHHHHH----------------------------H---------------HHhccCCEEEEeC--CchHHHHHHHHHcCC
Confidence 100000 0 0000000001110 111122335667778
Q ss_pred HHHHHHHHHc-cCCCeEeecC---CC------CCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcceEEEe
Q 008771 266 MRMSLGKILL-QDPDLLLLDE---PT------NHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKIVET 329 (554)
Q Consensus 266 qRv~LAraL~-~~p~lLlLDE---Pt------~~LD~~~~~~l~~~l----~~~g~tvIiisHd~~~l~~~~d~i~~l 329 (554)
++..+++++. .+|+++|||| |+ .++|+..+..+.+.| ++.+.++|+++|. ....++++++..+
T Consensus 265 ~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i 341 (365)
T 1lw7_A 265 AHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVI 341 (365)
T ss_dssp CCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHH
T ss_pred CCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHH
Confidence 8888888774 6999999999 65 588988777777765 3458899999986 4566677766544
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-16 Score=149.62 Aligned_cols=155 Identities=15% Similarity=0.066 Sum_probs=92.0
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc--------eEEEEecccccccCccHHHHHHHhhHHHH
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQEFEVSMSRTVREEFMSAFKEEM 190 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~--------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~ 190 (554)
.|++|++++|+|+||||||||+++|+|. |+.|.|.+++.+. .++|++|+.. ...++.+++......
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~-- 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR-- 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH--
Confidence 4789999999999999999999999998 7889999876431 2355555432 233455544211000
Q ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCcc-ccCCCCCCCChhHHHHHH
Q 008771 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD-DGDRLVASFSSGWQMRMS 269 (554)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~-~~~~~~~~LSGGqrqRv~ 269 (554)
. .. . +... .++.++..+++... ..+.++..+|+|++|+++
T Consensus 79 --------~---~~------------------------~-~~~~---~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~ 119 (191)
T 1zp6_A 79 --------Y---AK------------------------E-GYFV---ILDGVVRPDWLPAFTALARPLHYIVLRTTAAEA 119 (191)
T ss_dssp --------H---HH------------------------T-SCEE---EECSCCCTTTTHHHHTTCSCEEEEEEECCHHHH
T ss_pred --------H---hc------------------------c-CCeE---EEeccCcHHHHHHHHhcCCCeEEEEecCCHHHH
Confidence 0 00 0 0000 00001111122100 003345689999999999
Q ss_pred HHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCC--CeEEEEecCHHHHHhhcceEE
Q 008771 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQD--VPMVIISHDRAFLDQLCTKIV 327 (554)
Q Consensus 270 LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g--~tvIiisHd~~~l~~~~d~i~ 327 (554)
++|++..+|+++ +|+...+.+.+.+.... ..+++.|++. .+.+++++|+
T Consensus 120 ~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~~~-~~~~~~~~i~ 170 (191)
T 1zp6_A 120 IERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPVSGK-DTDQALQSAI 170 (191)
T ss_dssp HHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEECTTC-CTTTTTTTTH
T ss_pred HHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccEEECCCC-CHHHHHHHHH
Confidence 999999999987 68888888877765431 1344445432 2344556553
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-17 Score=178.32 Aligned_cols=123 Identities=11% Similarity=0.020 Sum_probs=91.9
Q ss_pred CceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce-E-EEECCcee-eEEEEecccc
Q 008771 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-E-VLLGEHNV-LPNYFEQNQA 498 (554)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G-~-i~~~~~~~-~~~y~~Q~~~ 498 (554)
.+.++++|+++.|+ ++||++.+||+++|+||||||||||+|+|+|+++|++| + |.+++..- .++|++|+..
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~ 189 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCIS 189 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCE
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchh
Confidence 45678888888774 68999999999999999999999999999999999999 8 99986321 2568888752
Q ss_pred c-CCCCCCCHHHHHHhhccc----CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 499 E-ALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 499 ~-~l~~~~tv~e~l~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
. .+....||.+|+ ..... .....+..++..+|+.. ..+ +..|||||||||+|
T Consensus 190 l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~-~~~--~~~LSgGq~qrlal 246 (460)
T 2npi_A 190 ATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLER-INE--NKDLYLECISQLGQ 246 (460)
T ss_dssp EEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSS-GGG--CHHHHHHHHHHHHH
T ss_pred hcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCc-ccc--hhhhhHHHHHHHHH
Confidence 1 233456888877 32210 11123456788889853 233 89999999999974
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-16 Score=146.30 Aligned_cols=83 Identities=22% Similarity=0.086 Sum_probs=71.3
Q ss_pred EEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCce-----EEEEecccccc
Q 008771 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK-----IAFLSQEFEVS 173 (554)
Q Consensus 99 ~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~-----i~~v~Q~~~~~ 173 (554)
..+++++.|+++.+++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.+++.+.. -.|++|++.++
T Consensus 9 ~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~ 87 (158)
T 1htw_A 9 PDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDLY 87 (158)
T ss_dssp CSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEECT
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccccc
Confidence 3356778888778999999999999999999999999999999999999 99999998876541 12689998887
Q ss_pred cCccHHHHHH
Q 008771 174 MSRTVREEFM 183 (554)
Q Consensus 174 ~~~tv~e~~~ 183 (554)
.+|+.+++.
T Consensus 88 -~ltv~e~l~ 96 (158)
T 1htw_A 88 -RLADPEELE 96 (158)
T ss_dssp -TCSCTTHHH
T ss_pred -cCCcHHHHH
Confidence 889988874
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-16 Score=161.98 Aligned_cols=107 Identities=20% Similarity=0.169 Sum_probs=79.9
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEecccccCCCC
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~~ 503 (554)
.|+++|++|.|+ ..+|+++||+|++|++++|+||||||||||+++|+|++ +|+|.. |++|++ .+ +
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~--------~v~q~~--~l-f 165 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLS--------FANHKS--HF-W 165 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEEC--------GGGTTS--GG-G
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEE--------EecCcc--cc-c
Confidence 378899999997 67999999999999999999999999999999999998 788842 456654 23 2
Q ss_pred CCCHHH-HHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhc
Q 008771 504 DKTVLE-TVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKII 551 (554)
Q Consensus 504 ~~tv~e-~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~R 551 (554)
..|+.+ |+.... ... ..+...+..+ ++ +.++ +..||||||||
T Consensus 166 ~~ti~~~ni~~~~-~~~-~~~~~~i~~~-L~-~gld--g~~LSgGqkQR 208 (305)
T 2v9p_A 166 LASLADTRAALVD-DAT-HACWRYFDTY-LR-NALD--GYPVSIDRKHK 208 (305)
T ss_dssp GGGGTTCSCEEEE-EEC-HHHHHHHHHT-TT-GGGG--TCCEECCCSSC
T ss_pred cccHHHHhhccCc-ccc-HHHHHHHHHH-hH-ccCC--ccCcCHHHHHH
Confidence 346765 654431 222 2445556654 33 2334 78999999999
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=132.79 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=28.2
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHC--CCCC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG--QEEP 149 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G--~~~p 149 (554)
-|++|++++|+|+||||||||++.|++ ..+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~ 52 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPI 52 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCG
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCch
Confidence 478999999999999999999999999 5665
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=7.2e-16 Score=157.13 Aligned_cols=117 Identities=12% Similarity=0.006 Sum_probs=88.3
Q ss_pred eEEEeeeeEecCCccceeceEEE-----------------------EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceE
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLT-----------------------IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~-----------------------i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~ 480 (554)
.|++++|++.|. +++++++|. +.+|+++||+||||||||||+++|+|+++|..|.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 478899999995 455655554 8999999999999999999999999999997663
Q ss_pred EEECCceeeEEEEecccccCCCCCCCHHHHHHhhc----c-cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 481 VLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAA----E-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 481 i~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~----~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
..++|++|+. .+.+. |+.+++.... + ......+...|..++ .+ ..+.++..|||||+||+++
T Consensus 121 -------~~v~~v~qd~--~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~-~~~~~~~~lS~G~~qRv~~ 187 (312)
T 3aez_A 121 -------PRVDLVTTDG--FLYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSVK-SG-SDYACAPVYSHLHYDIIPG 187 (312)
T ss_dssp -------CCEEEEEGGG--GBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TT-CSCEEEEEEETTTTEEEEE
T ss_pred -------CeEEEEecCc--cCCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CC-cccCCcccCChhhhhhhhh
Confidence 2367999985 34455 9999975321 1 223456777788777 32 3457788999999999863
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.43 E-value=8.3e-17 Score=151.70 Aligned_cols=162 Identities=12% Similarity=0.049 Sum_probs=98.2
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----ceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHH
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER 198 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~ 198 (554)
|++++|+|+||||||||+++|++ |.+|.+.+++.. ..+++++|........++.+++......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------- 68 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVN---------- 68 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHH----------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHHH----------
Confidence 67999999999999999999997 678988887532 1345666554332333454443211000
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCC--ChhHHHHHHHHH----
Q 008771 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF--SSGWQMRMSLGK---- 272 (554)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L--SGGqrqRv~LAr---- 272 (554)
.... .. ..+++.+.. ... .+.+..+ |+|++|++.++.
T Consensus 69 ---~~~~-------------------------~~-------~~ild~~~~-~~~-~~~~~~~~~s~g~~~~~~~i~L~~~ 111 (189)
T 2bdt_A 69 ---FLLA-------------------------QN-------DVVLDYIAF-PDE-AEALAQTVQAKVDDVEIRFIILWTN 111 (189)
T ss_dssp ---HHHT-------------------------TC-------EEEEESCCC-HHH-HHHHHHHHHHHCSSEEEEEEEEECC
T ss_pred ---HHhc-------------------------CC-------cEEEeeccC-HHH-HHHHHHHHHhcccCCCeEEEEEeCC
Confidence 0000 00 001111110 000 0111234 888888888888
Q ss_pred --HHccCCCeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecC-HHHHHhhcceEEEeeCCeeeeccCCh
Q 008771 273 --ILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHD-RAFLDQLCTKIVETEMGVSRTYEGNY 341 (554)
Q Consensus 273 --aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd-~~~l~~~~d~i~~l~~g~~~~~~G~~ 341 (554)
+++.+|....+|+ +||+..+.. .+.+ ...+.++|.+||. ++.+.++||+|+ ++|++ .+.|+.
T Consensus 112 ~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~-~~~~~~ 179 (189)
T 2bdt_A 112 REELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRF-IFCMAG 179 (189)
T ss_dssp HHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGG-SCC---
T ss_pred HHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcE-EEeecC
Confidence 8889999888884 789876665 4443 3457899999999 999999999998 88876 455544
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.42 E-value=5.5e-14 Score=145.01 Aligned_cols=116 Identities=17% Similarity=0.151 Sum_probs=84.0
Q ss_pred eEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-CCceeEEEc-CC------CceEEEEecccccccCccHHHHHH
Q 008771 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKA-KS------NMKIAFLSQEFEVSMSRTVREEFM 183 (554)
Q Consensus 112 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-p~~G~I~~~-~~------~~~i~~v~Q~~~~~~~~tv~e~~~ 183 (554)
-++++++.+ +|++++|+|+||||||||+++|+|... |++|+|.+. |. ...+++++|+..+++..++.++.+
T Consensus 205 gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~l 283 (358)
T 2rcn_A 205 GLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGL 283 (358)
T ss_dssp THHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCCC
T ss_pred CHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhhh
Confidence 355666643 799999999999999999999999999 999999875 42 236899999988777777766311
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChh
Q 008771 184 SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263 (554)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGG 263 (554)
. .+...++...+.++++.+|+. .+.++.+.+|| |
T Consensus 284 ~--------------------------------------------~l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~lS-G 317 (358)
T 2rcn_A 284 W--------------------------------------------HLEPEQITQGFVEFHDYLGHC-KYRDCKHDADP-G 317 (358)
T ss_dssp C--------------------------------------------CCCHHHHHHTSGGGGGGTTCS-SSTTCCSSSCT-T
T ss_pred c--------------------------------------------CCCHHHHHHHHHHHHHHcCCc-hhcCCCcccCC-H
Confidence 0 011122344566778888886 45688899999 9
Q ss_pred HHHHHHHHHHH
Q 008771 264 WQMRMSLGKIL 274 (554)
Q Consensus 264 qrqRv~LAraL 274 (554)
|+||++||+++
T Consensus 318 ~~~r~ala~gl 328 (358)
T 2rcn_A 318 CAIREAVENGA 328 (358)
T ss_dssp CHHHHHHHHTS
T ss_pred HHHHHHHHhcC
Confidence 99999999875
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-15 Score=149.07 Aligned_cols=143 Identities=18% Similarity=0.164 Sum_probs=86.4
Q ss_pred CCCEEEEECCCCccHHHHHHHHH---CCCCCCceeEEEcCCC------ceEEEEecccccccCccHHHHHHHhhHHHHHH
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIA---GQEEPDSGNVIKAKSN------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEI 192 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~---G~~~p~~G~I~~~~~~------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~ 192 (554)
++++++|+|+||||||||+++|+ |+..|+.|+|.+++.. ..+.+++|+..+.+..++.+++...+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~---- 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELEN---- 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT----
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh----
Confidence 47999999999999999999999 9999999998775421 1133344555444555565554321100
Q ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh--hhcCC-----------CccccCCCCCC
Q 008771 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM--PELGF-----------TADDGDRLVAS 259 (554)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~lgl-----------~~~~~~~~~~~ 259 (554)
. .-....- ...... ...+..+. ..+++ -....++.+..
T Consensus 102 ------~--~~~~~il-------------------~g~~~~--~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~ 152 (246)
T 2bbw_A 102 ------R--RGQHWLL-------------------DGFPRT--LGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHP 152 (246)
T ss_dssp ------C--TTSCEEE-------------------ESCCCS--HHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEET
T ss_pred ------c--CCCeEEE-------------------ECCCCC--HHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcC
Confidence 0 0000000 000000 01111111 11110 01123567789
Q ss_pred CChhHHHHHHHHHHH-ccCCCeEeec----CCCCCCCHHHHHHHHHHHcc
Q 008771 260 FSSGWQMRMSLGKIL-LQDPDLLLLD----EPTNHLDLDTIEWLEGYLGK 304 (554)
Q Consensus 260 LSGGqrqRv~LAraL-~~~p~lLlLD----EPt~~LD~~~~~~l~~~l~~ 304 (554)
||| |+ +++ +.+|++++|| |||++||..+.+.+.+.++.
T Consensus 153 lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~ 195 (246)
T 2bbw_A 153 PSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQ 195 (246)
T ss_dssp TTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHH
T ss_pred CCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHH
Confidence 999 55 677 9999999999 99999999888777776654
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.40 E-value=4.4e-15 Score=136.23 Aligned_cols=83 Identities=14% Similarity=0.041 Sum_probs=69.2
Q ss_pred EeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeE-----EEEecccccCC
Q 008771 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-----NYFEQNQAEAL 501 (554)
Q Consensus 427 ~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~-----~y~~Q~~~~~l 501 (554)
..++++.|++..+++++||+|.+||+++|+||||||||||+|+|+|++ |++|+|.+++.++.. .|++|+. .+
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~--~l 86 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHF--DL 86 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEE--EC
T ss_pred CHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceecc--cc
Confidence 345677787667899999999999999999999999999999999999 999999998876532 2577874 35
Q ss_pred CCCCCHHHHHHh
Q 008771 502 DLDKTVLETVAE 513 (554)
Q Consensus 502 ~~~~tv~e~l~~ 513 (554)
+ ..||.+++..
T Consensus 87 ~-~ltv~e~l~~ 97 (158)
T 1htw_A 87 Y-RLADPEELEF 97 (158)
T ss_dssp T-TCSCTTHHHH
T ss_pred c-cCCcHHHHHH
Confidence 5 7899998854
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.5e-14 Score=144.62 Aligned_cols=155 Identities=15% Similarity=0.197 Sum_probs=104.8
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------------eEEEEecccccccCccHHHHHH
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------------KIAFLSQEFEVSMSRTVREEFM 183 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------------~i~~v~Q~~~~~~~~tv~e~~~ 183 (554)
.++|++++|+|+||||||||+++|+|+++|++|+|.+.+.+. .+.|++|...+.+..+|++++.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 468999999999999999999999999999999999876432 3669999888877788888874
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChh
Q 008771 184 SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263 (554)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGG 263 (554)
.+... .. +. -+++..|... .....+.+|
T Consensus 206 ~~~~~----------------------------------------~~--d~------vliDtaG~~~-~~~~l~~eL--- 233 (328)
T 3e70_C 206 HAKAR----------------------------------------GI--DV------VLIDTAGRSE-TNRNLMDEM--- 233 (328)
T ss_dssp HHHHH----------------------------------------TC--SE------EEEEECCSCC-TTTCHHHHH---
T ss_pred HHHhc----------------------------------------cc--hh------hHHhhccchh-HHHHHHHHH---
Confidence 32100 00 00 0133334321 112222333
Q ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCH---------HHHHhhcceEEEeeCCe
Q 008771 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR---------AFLDQLCTKIVETEMGV 333 (554)
Q Consensus 264 qrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~---------~~l~~~~d~i~~l~~g~ 333 (554)
-.+++++..++.+++||.+|. . ...+.+..+-+..+.|+||+||.- +.+....-.|.++..|.
T Consensus 234 ----~~i~ral~~de~llvLDa~t~-~--~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge 305 (328)
T 3e70_C 234 ----KKIARVTKPNLVIFVGDALAG-N--AIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQ 305 (328)
T ss_dssp ----HHHHHHHCCSEEEEEEEGGGT-T--HHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSS
T ss_pred ----HHHHHHhcCCCCEEEEecHHH-H--HHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCC
Confidence 348999999999999996665 3 333444444445789999999943 23444455778887775
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-13 Score=136.27 Aligned_cols=110 Identities=15% Similarity=0.019 Sum_probs=67.7
Q ss_pred CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEecccccCCCCCCCHHHHHHhh
Q 008771 435 EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514 (554)
Q Consensus 435 ~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~ 514 (554)
++..+|+++||++.+|++|||+||||||||||+++|+|++ |.+.++...-.++|++|+. +....|+.+++...
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~---~~~~l~~~~~~~~~ 82 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDR---FYKVLTAEQKAKAL 82 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGG---GBCCCCHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCc---CccccCHhHhhhhh
Confidence 3456899999999999999999999999999999999976 3333221112367899873 44677999887643
Q ss_pred cc--------cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 515 AE--------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 515 ~~--------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.. ......+...|..+ .....+++..||+||++|+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~L~~l---~~~~~~~~~~ls~g~~~r~~~ 127 (245)
T 2jeo_A 83 KGQYNFDHPDAFDNDLMHRTLKNI---VEGKTVEVPTYDFVTHSRLPE 127 (245)
T ss_dssp TTCCCTTSGGGBCHHHHHHHHHHH---HTTCCEEECCEETTTTEECSS
T ss_pred ccCCCCCCcccccHHHHHHHHHHH---HCCCCeecccccccccCccCc
Confidence 21 12233455666653 123467889999999999853
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.2e-16 Score=161.61 Aligned_cols=78 Identities=15% Similarity=0.191 Sum_probs=68.2
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------ce
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MK 162 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~~ 162 (554)
+|+++++++.|+...+|+++||++.+|++++|+|+||||||||+++|+|++.|++|+|.+.+.+ .+
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 3677888989977789999999999999999999999999999999999999999999876532 24
Q ss_pred EEEEeccccccc
Q 008771 163 IAFLSQEFEVSM 174 (554)
Q Consensus 163 i~~v~Q~~~~~~ 174 (554)
++|++|++.++.
T Consensus 109 i~~v~q~~~~~~ 120 (337)
T 2qm8_A 109 MARLAIDRNAFI 120 (337)
T ss_dssp STTGGGCTTEEE
T ss_pred heeeccCccccc
Confidence 789999887764
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-14 Score=142.57 Aligned_cols=96 Identities=15% Similarity=0.128 Sum_probs=58.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------eEEEEecccccCCCCCCCHHHHHHhhccc---CCHH
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQNQAEALDLDKTVLETVAEAAED---WRID 521 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~---~~~~ 521 (554)
.++|+||||||||||+++|+|+..|++|+|.++|.++ .++|++|+. .+.+..||.|++..+... ....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~--~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEG--GVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC------CCEEEEECCCC--CCSBCTTCSH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecC--CCcCCceEEechhhhhhcccHHHHH
Confidence 4799999999999999999999999999999887643 357888874 466778999987654321 1112
Q ss_pred HHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 522 ~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.+..++. ....+..+..|||||+|||++
T Consensus 82 ~i~~~~~-----~~~~~~~~~~LS~G~~qrv~i 109 (270)
T 3sop_A 82 PIEKYIN-----EQYEKFLKEEVNIARKKRIPD 109 (270)
T ss_dssp HHHHHHH-----HHHHHHHHHHSCTTCCSSCCC
T ss_pred HHHHHHH-----HHHHhhhHHhcCcccchhhhh
Confidence 3344433 334567889999999999875
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-13 Score=147.01 Aligned_cols=147 Identities=18% Similarity=0.208 Sum_probs=98.5
Q ss_pred EEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------------ceEEEEecccccccCc
Q 008771 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------MKIAFLSQEFEVSMSR 176 (554)
Q Consensus 113 l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------------~~i~~v~Q~~~~~~~~ 176 (554)
-+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+.+.+ ..|+|++|+..+++..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 468999999999999999999999999999999999999999986432 1489999988776777
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCC
Q 008771 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (554)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (554)
++++++..+.. . +.+. -+++..|..... ...
T Consensus 363 tV~e~l~~a~~-----------------~-------------------------~~Dv------VLIDTaGrl~~~-~~l 393 (503)
T 2yhs_A 363 VIFDAIQAAKA-----------------R-------------------------NIDV------LIADTAGRLQNK-SHL 393 (503)
T ss_dssp HHHHHHHHHHH-----------------T-------------------------TCSE------EEECCCCSCCCH-HHH
T ss_pred HHHHHHHHHHh-----------------c-------------------------CCCE------EEEeCCCccchh-hhH
Confidence 88887643210 0 0000 023333432111 011
Q ss_pred CCCCChhHHHHHHHHHHHc-cCCC-eEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEec
Q 008771 257 VASFSSGWQMRMSLGKILL-QDPD-LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH 314 (554)
Q Consensus 257 ~~~LSGGqrqRv~LAraL~-~~p~-lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisH 314 (554)
+.+| ++++.+++++. ..|+ +||...||++.|.. ..+..+-...+.|.||+||
T Consensus 394 m~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al--~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 394 MEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV--SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp HHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH--HHHHHHHHHTCCSEEEEEC
T ss_pred HHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHH--HHHHHHHhhcCCCEEEEEc
Confidence 1222 47888888764 4564 55555599886544 3333333456899999999
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-13 Score=133.98 Aligned_cols=106 Identities=13% Similarity=0.079 Sum_probs=58.0
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eEEEEecccccCCCCCCC
Q 008771 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPNYFEQNQAEALDLDKT 506 (554)
Q Consensus 438 ~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----------~~~y~~Q~~~~~l~~~~t 506 (554)
.-|+++||+|.+|++++|+||||||||||+++|+|++ | |.|.+ +.++ ..+|++|++. ++...+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKT--IFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHH--HHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHH--HHHHhh
Confidence 3589999999999999999999999999999999998 6 88888 4332 1346776642 111110
Q ss_pred HH-HHHHh----h-cccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 507 VL-ETVAE----A-AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 507 v~-e~l~~----~-~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.. +++.. . ........+..++...... .++ ..|||||+||++|
T Consensus 85 ~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~--il~---~~lsggq~qR~~i 133 (218)
T 1z6g_A 85 KNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC--LFE---MNINGVKQLKKST 133 (218)
T ss_dssp HTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE--EEE---ECHHHHHHHTTCS
T ss_pred hccchhhhhhcccccCCCcHHHHHHHHhCCCcE--EEE---ecHHHHHHHHHHh
Confidence 00 00000 0 0011234566666654321 112 6789999999875
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-14 Score=134.17 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=35.8
Q ss_pred ccCCCeEeecCCCC-CCCHHHHHHHHHHHc---cCCCeEEEEecCHH
Q 008771 275 LQDPDLLLLDEPTN-HLDLDTIEWLEGYLG---KQDVPMVIISHDRA 317 (554)
Q Consensus 275 ~~~p~lLlLDEPt~-~LD~~~~~~l~~~l~---~~g~tvIiisHd~~ 317 (554)
+.+|++||||||++ ++|+...+.|.+++. +.++++|++||...
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 34999999999995 899999888877764 36899999999863
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-15 Score=154.85 Aligned_cols=55 Identities=22% Similarity=0.249 Sum_probs=40.7
Q ss_pred CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhh
Q 008771 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 259 ~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~ 322 (554)
+||+||+||+..+++++.+|+++ ||| ....+.| ..++ .+.+|+++||+...+..+
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~-----~~l~~~l-~~l~-~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA-----EKLHERL-ARIN-ARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT-----HHHHHHH-HHHC-SSSCEEECCSSCCCGGGG
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH-----HHHHHHH-HHhC-CCCeEEEecccCCCHHHH
Confidence 79999999999999999999988 999 2222223 2233 578999999975444433
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-13 Score=145.62 Aligned_cols=147 Identities=21% Similarity=0.254 Sum_probs=90.7
Q ss_pred eEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCC-----------CCceeEEEcCCCceEEEEecccccccCccHHH
Q 008771 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----------PDSGNVIKAKSNMKIAFLSQEFEVSMSRTVRE 180 (554)
Q Consensus 112 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----------p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e 180 (554)
--++++|+++.|++++|||+||||||||+++|+|..+ |+.|.|.+++. .. -.+.+.+.+..... +
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~-~~-~~l~DtpGli~~a~--~ 221 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE-ER-FTLADIPGIIEGAS--E 221 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS-CE-EEEEECCCCCCCGG--G
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc-ce-EEEEeccccccchh--h
Confidence 3589999999999999999999999999999999842 33343333220 01 11222222211000 0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCC
Q 008771 181 EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF 260 (554)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 260 (554)
+. .+. ..++ . ..++++.++..+++. +.++.+|
T Consensus 222 ~~--~L~----------------------~~fl-----------~---------~~era~~lL~vvDls----~~~~~~l 253 (416)
T 1udx_A 222 GK--GLG----------------------LEFL-----------R---------HIARTRVLLYVLDAA----DEPLKTL 253 (416)
T ss_dssp SC--CSC----------------------HHHH-----------H---------HHTSSSEEEEEEETT----SCHHHHH
T ss_pred hh--hhh----------------------HHHH-----------H---------HHHHHHhhhEEeCCc----cCCHHHH
Confidence 00 000 0000 0 001123345555553 4566789
Q ss_pred ChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHH---HHHHHHHccCCCeEEEEec
Q 008771 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI---EWLEGYLGKQDVPMVIISH 314 (554)
Q Consensus 261 SGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~---~~l~~~l~~~g~tvIiisH 314 (554)
|+|++|++++|++|+..|.+|+| |.+|+... ..+.+.+++.+.++|+||.
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEEC
Confidence 99999999999999999999999 99998543 3334445556777777663
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-14 Score=152.68 Aligned_cols=120 Identities=15% Similarity=0.082 Sum_probs=88.0
Q ss_pred ceEEEeeeeEecC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc---ee----------
Q 008771 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH---NV---------- 488 (554)
Q Consensus 423 ~~l~~~~l~~~y~-~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~---~~---------- 488 (554)
..++++++++.|+ +..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|. ++
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4578899999997 56799999 999999999999999999999999999999999999998886 22
Q ss_pred -----eEEEEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 -----LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 -----~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|.. ..+.+..||.+++..... ++...+-.-..+-..+..||||| |||+|
T Consensus 209 ~~l~r~i~~v~q~~-~~~~~~~~v~~~~~~~ae---------~~~~~~~~v~~~ld~l~~lS~g~-qrvsl 268 (438)
T 2dpy_A 209 DGRARSVVIAAPAD-VSPLLRMQGAAYATRIAE---------DFRDRGQHVLLIMDSLTRYAMAQ-REIAL 268 (438)
T ss_dssp HHHHTEEEEEECTT-SCHHHHHHHHHHHHHHHH---------HHHTTTCEEEEEEECHHHHHHHH-HHHHH
T ss_pred cccCceEEEEECCC-CCHHHHHHHHHHHHHHHH---------HHHhCCCCHHHHHHhHHHHHHHH-HHHHH
Confidence 247899853 234456677777654321 11111111111223477899999 88753
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-14 Score=138.02 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=39.9
Q ss_pred ecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Q 008771 433 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482 (554)
Q Consensus 433 ~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~ 482 (554)
.|+++.+++++ .+||+++|+||||||||||+++|+|+ +|++|+|.
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~ 53 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS 53 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee
Confidence 35556688885 89999999999999999999999999 99999884
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-14 Score=151.07 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=83.3
Q ss_pred ccceeceEEEEecCC--------------------EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-eEEEEec
Q 008771 437 RLLFNRANLTIERGE--------------------KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-LPNYFEQ 495 (554)
Q Consensus 437 ~~~l~~vs~~i~~Ge--------------------~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-~~~y~~Q 495 (554)
..+++++||+|.+|| ++||+||||||||||+++|+|+.+|++|+|.+++.++ ..+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 357999999999999 9999999999999999999999999999999887644 2368888
Q ss_pred ccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChh--hhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG--EKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGG--ek~Rl~l 554 (554)
++ ..+..|+.|++...... ..+..+|..+++.. .+..+. |||| |+||++|
T Consensus 116 ~~---~~~~ltv~D~~g~~~~~---~~~~~~L~~~~L~~--~~~~~~-lS~G~~~kqrv~l 167 (413)
T 1tq4_A 116 HP---NIPNVVFWDLPGIGSTN---FPPDTYLEKMKFYE--YDFFII-ISATRFKKNDIDI 167 (413)
T ss_dssp CS---SCTTEEEEECCCGGGSS---CCHHHHHHHTTGGG--CSEEEE-EESSCCCHHHHHH
T ss_pred cc---ccCCeeehHhhcccchH---HHHHHHHHHcCCCc--cCCeEE-eCCCCccHHHHHH
Confidence 63 34567777776443222 23677888888853 244444 9999 9999863
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.8e-15 Score=157.33 Aligned_cols=62 Identities=13% Similarity=0.220 Sum_probs=52.3
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~ 160 (554)
.++++++++.|+...+|+++ +. .+|++++|+||||||||||+++|+|+++|++|+|.+.+.+
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 35677777777666688888 53 8899999999999999999999999999999999886643
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=6.4e-12 Score=131.94 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=29.3
Q ss_pred EEECCCEEEEECCCCccHHHHHH--HHHCCCCCCce
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLR--IIAGQEEPDSG 152 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk--~i~G~~~p~~G 152 (554)
-|++|++++|+|+||||||||++ ++.+..+++.|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~G 209 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG 209 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccC
Confidence 58899999999999999999999 45677777554
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.7e-12 Score=131.43 Aligned_cols=139 Identities=12% Similarity=0.151 Sum_probs=78.3
Q ss_pred EEEEECCCCccHHHHHHHHHC-CCCCCceeEEEcCCC--------ceEEEEecccccccCccHHHHHHHhhHHHHHHHHH
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG-QEEPDSGNVIKAKSN--------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G-~~~p~~G~I~~~~~~--------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (554)
.+.|+||||+|||||+++|+| ++.|+.|.|.+++.. ..+++++|...+....+-.. . .
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~---------- 104 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMG-N--N---------- 104 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC-------C----------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcC-C--c----------
Confidence 389999999999999999999 789999999876532 24667777654322111000 0 0
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHc
Q 008771 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (554)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~ 275 (554)
....+...+..+....++.. .. .||| +.
T Consensus 105 -----------------------------------~~~~~~~~i~~~~~~~~~~~-----~~-~ls~-----------l~ 132 (354)
T 1sxj_E 105 -----------------------------------DRIVIQELLKEVAQMEQVDF-----QD-SKDG-----------LA 132 (354)
T ss_dssp -----------------------------------CHHHHHHHHHHHTTTTC----------------------------
T ss_pred -----------------------------------chHHHHHHHHHHHHhccccc-----cc-cccc-----------cC
Confidence 00001112222222223211 11 5676 78
Q ss_pred cCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHH-HhhcceEEEe
Q 008771 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL-DQLCTKIVET 329 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l-~~~~d~i~~l 329 (554)
.+|+++|+|||++ ||....+.|.+.+.+ .+.++|++||++..+ ..+.+|+..+
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~ 188 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLI 188 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEE
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEE
Confidence 8999999999999 999999999998865 368999999997533 2344454433
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.2e-14 Score=131.38 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=31.5
Q ss_pred CEEEEECCCCccHHHHHHHHHCCCCCC---ceeEEEcCCC
Q 008771 124 EKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSN 160 (554)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~p~---~G~I~~~~~~ 160 (554)
++++|+|+||||||||+++|+|+++|+ .|.|.+++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 589999999999999999999999998 8999987643
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.6e-12 Score=133.27 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=33.8
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 438 ~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
.+|++++|++.+| +++|+|+||||||||+++|.++..
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999 999999999999999999976654
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-14 Score=154.65 Aligned_cols=184 Identities=14% Similarity=0.047 Sum_probs=105.7
Q ss_pred eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------ceEEEEecccccccCccHHHHHH
Q 008771 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQEFEVSMSRTVREEFM 183 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------~~i~~v~Q~~~~~~~~tv~e~~~ 183 (554)
.+++++++.|++|+.++|+|+||||||||+++|+|+++|++|.|.+++.. ..++++.|........|..+.+.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 47889999999999999999999999999999999999999999987643 13556665433112345555543
Q ss_pred HhhHH--------HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh-hcCCCcccc-
Q 008771 184 SAFKE--------EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP-ELGFTADDG- 253 (554)
Q Consensus 184 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~lgl~~~~~- 253 (554)
..+.. ++........++...... .-. ..+........+..+.. .++++....
T Consensus 328 ~~LR~~PD~iivgEir~~E~~~~l~a~~tGh-~~~-----------------sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~ 389 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGREAQTLFQAMSTGH-ASY-----------------STLHAGDINQMVYRLESEPLKVPRSMLQ 389 (511)
T ss_dssp TTGGGCCSEEEESCCCSTHHHHHHHHHHTTC-EEE-----------------EEEECSSHHHHHHHHHSTTTCCCGGGGG
T ss_pred HhhccCCCeEEeCCcCHHHHHHHHHhhcCCC-Ccc-----------------cccccCCHHHHHHHHHhcccccHHHHHh
Confidence 32210 000000000000000000 000 00000112222222211 123322111
Q ss_pred --C---CCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEE--EecCHHHHHhhc
Q 008771 254 --D---RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVI--ISHDRAFLDQLC 323 (554)
Q Consensus 254 --~---~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIi--isHd~~~l~~~~ 323 (554)
+ .....+||||+||++++. + | |++||+.....+.+.+. ..+.|+|+ +||+++.+...|
T Consensus 390 ~l~~vi~~~~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~ 457 (511)
T 2oap_1 390 FLDIALVQTMWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFL 457 (511)
T ss_dssp GCCEEEEEEEEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHH
T ss_pred hccEEEEEEEEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHc
Confidence 1 223468999999887651 1 7 99999977655555443 34788875 899999998877
Q ss_pred c
Q 008771 324 T 324 (554)
Q Consensus 324 d 324 (554)
+
T Consensus 458 g 458 (511)
T 2oap_1 458 G 458 (511)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.6e-13 Score=134.71 Aligned_cols=121 Identities=16% Similarity=0.154 Sum_probs=82.5
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEE---cCCCc----------eEEEEecccccc-----cCccHHHH
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK---AKSNM----------KIAFLSQEFEVS-----MSRTVREE 181 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~---~~~~~----------~i~~v~Q~~~~~-----~~~tv~e~ 181 (554)
+..|++++|+|+||||||||+|+|+ +.+|++|+|.+ .|.+. .+||++|.|.+. +.+|+ ++
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~ 239 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-RE 239 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HH
Confidence 3469999999999999999999999 99999999998 66431 379999998654 56788 77
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCC
Q 008771 182 FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261 (554)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LS 261 (554)
+...+.+... +. ..........+...++.++++.+||.....++++..||
T Consensus 240 l~~~f~~~~~----------------------------~~--c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls 289 (302)
T 2yv5_A 240 VRNYFREFLR----------------------------YQ--CKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIK 289 (302)
T ss_dssp GGGGCGGGHH----------------------------HH--HHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHH----------------------------cc--CCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 6432211000 00 00000012233445788999999997656788899999
Q ss_pred hhHHHHHHHHH
Q 008771 262 SGWQMRMSLGK 272 (554)
Q Consensus 262 GGqrqRv~LAr 272 (554)
|.+++++.|||
T Consensus 290 ~~~~R~~~~~~ 300 (302)
T 2yv5_A 290 VYLEEIKELCR 300 (302)
T ss_dssp CCCTTHHHHSS
T ss_pred HHHHHHHHHhc
Confidence 98899999986
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-13 Score=144.59 Aligned_cols=161 Identities=16% Similarity=0.164 Sum_probs=108.3
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHC------------CCCCCceeEEEcCCC-----------c---eEEEEeccccc
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG------------QEEPDSGNVIKAKSN-----------M---KIAFLSQEFEV 172 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G------------~~~p~~G~I~~~~~~-----------~---~i~~v~Q~~~~ 172 (554)
.+..|.++||||+||+|||||+++|+| .+.|+.|.|.+.+.. . ...++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 346899999999999999999999999 567999999987521 1 13466777776
Q ss_pred ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccc
Q 008771 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (554)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 252 (554)
....+..+++...+.. .+. .++.++.-+...
T Consensus 96 ~~~~s~~e~L~~~fl~-------------~ir---------------------------------~~d~il~Vvd~~--- 126 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLS-------------HVR---------------------------------AVDAIYQVVRAF--- 126 (392)
T ss_dssp CCCCCSSSSSCHHHHH-------------HHT---------------------------------TCSEEEEEEECC---
T ss_pred ccCCcHHHHHHHHHHH-------------HHH---------------------------------HHHHHHHHHhcc---
Confidence 6555543322110000 000 011122222221
Q ss_pred cCCCCCCCChhHHHHHHHHHHHccCC--CeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcceE
Q 008771 253 GDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKI 326 (554)
Q Consensus 253 ~~~~~~~LSGGqrqRv~LAraL~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d~i 326 (554)
.+..+..+||+. +| +++++|||+..+|+...+...+.+. ..|.|++ +|+...+..+|++|
T Consensus 127 ~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i 192 (392)
T 1ni3_A 127 DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKV 192 (392)
T ss_dssp CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHH
T ss_pred ccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHH
Confidence 134455577763 99 9999999999999998877666553 3366653 99999999999999
Q ss_pred E-EeeCC-eeeeccCChhH
Q 008771 327 V-ETEMG-VSRTYEGNYSQ 343 (554)
Q Consensus 327 ~-~l~~g-~~~~~~G~~~~ 343 (554)
. +|++| +. .+.|.+++
T Consensus 193 ~~~L~~G~~~-~~~~~~~~ 210 (392)
T 1ni3_A 193 YQYLTETKQP-IRKGDWSN 210 (392)
T ss_dssp HHHHHTTCSC-GGGSCCCH
T ss_pred HHHhccCCce-eecCCCCH
Confidence 9 89999 65 44566553
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.2e-14 Score=144.02 Aligned_cols=84 Identities=13% Similarity=0.199 Sum_probs=67.8
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEE-------------------ECCCEEEEECCCCccHHHHHHHHHCCCC--CCceeE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEV-------------------KKGEKVGLVGVNGAGKTTQLRIIAGQEE--PDSGNV 154 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i-------------------~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--p~~G~I 154 (554)
..|+++||++.|+ +++++++|.+ .+|+++||+|+||||||||+++|+|++. |++|+|
T Consensus 36 ~~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i 113 (308)
T 1sq5_A 36 EDLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRV 113 (308)
T ss_dssp TTCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred cccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeE
Confidence 3488999999993 7899999988 8999999999999999999999999988 999999
Q ss_pred EE---cCCCc------eEEEEecccccccCccHHHHH
Q 008771 155 IK---AKSNM------KIAFLSQEFEVSMSRTVREEF 182 (554)
Q Consensus 155 ~~---~~~~~------~i~~v~Q~~~~~~~~tv~e~~ 182 (554)
.+ ++... .++++ |...++...++.+++
T Consensus 114 ~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~ 149 (308)
T 1sq5_A 114 ELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLV 149 (308)
T ss_dssp EEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHH
T ss_pred EEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHH
Confidence 88 65432 24555 555555555666554
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.5e-12 Score=132.75 Aligned_cols=63 Identities=21% Similarity=0.172 Sum_probs=57.7
Q ss_pred ceEEEeeeeEecC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008771 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (554)
Q Consensus 423 ~~l~~~~l~~~y~-~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~ 486 (554)
.+++++++++.|+ +..+++++ |+|.+|++++|+|+||||||||+++|+|+.+|+.|.|.+.|.
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~ 107 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGE 107 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecc
Confidence 4688899999997 56789999 999999999999999999999999999999999998887664
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.9e-13 Score=144.35 Aligned_cols=125 Identities=17% Similarity=0.082 Sum_probs=86.9
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeE-------------
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP------------- 490 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~------------- 490 (554)
+++++++.+.|+...+|+++ +. .+|++++|+|||||||||||++|+|++.|.+|.|.+.+.++..
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccc
Confidence 45677777777655678887 53 8999999999999999999999999999999998887654421
Q ss_pred -EEE---------ecccccCCCCC----CCHHHHHHhhcc---------cCCHHHHHHHHhhCCCChhhhccccCcCChh
Q 008771 491 -NYF---------EQNQAEALDLD----KTVLETVAEAAE---------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547 (554)
Q Consensus 491 -~y~---------~Q~~~~~l~~~----~tv~e~l~~~~~---------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGG 547 (554)
+|. .|+|...+..+ .|+.+++..+.. ......+...|..+++... ..+..||||
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~---~~~~~LSgg 297 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF---LISSSLLGV 297 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH---HHHHHEEEE
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH---HHHHHHHHH
Confidence 121 25543211122 478888765421 1112334456788888642 378899999
Q ss_pred hhhccc
Q 008771 548 EKIILL 553 (554)
Q Consensus 548 ek~Rl~ 553 (554)
|+||++
T Consensus 298 ~~QRLa 303 (418)
T 1p9r_A 298 LAQRLV 303 (418)
T ss_dssp EEEEEE
T ss_pred HHHHhh
Confidence 999964
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-13 Score=130.33 Aligned_cols=148 Identities=15% Similarity=0.075 Sum_probs=81.8
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHH
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 199 (554)
.++|++++|+|+||||||||+++|+|+++|+ | ..+++|+++...+ ..+..+++.. +..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g--------~~~g~v~~d~~~~-~~~~~~~~~~-~~~----------- 76 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G--------LPAEVVPMDGFHL-DNRLLEPRGL-LPR----------- 76 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T--------CCEEEEESGGGBC-CHHHHGGGTC-GGG-----------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C--------CceEEEecCCCcC-CHHHHHHhcc-ccc-----------
Confidence 4689999999999999999999999999875 3 1356666664332 1122111100 000
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHH-HHHccCC
Q 008771 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG-KILLQDP 278 (554)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LA-raL~~~p 278 (554)
..+.. ..+. ..+...+..+...-.+.....++. ..+|+||+|++++| ++++.++
T Consensus 77 -~~~~~-~~~~----------------------~~~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~~~~~~i~eg 131 (208)
T 3c8u_A 77 -KGAPE-TFDF----------------------EGFQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGPECRVAIIEG 131 (208)
T ss_dssp -TTSGG-GBCH----------------------HHHHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECTTCCEEEEEE
T ss_pred -CCCCc-hhhH----------------------HHHHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcCCCcEEEECC
Confidence 00000 0000 000011111111101111122333 35799999999998 8899999
Q ss_pred CeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHH-HHhhcce
Q 008771 279 DLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAF-LDQLCTK 325 (554)
Q Consensus 279 ~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~-l~~~~d~ 325 (554)
.++++|||.. ..+...--.+|+++++.+. +.+++.|
T Consensus 132 ~~~l~de~~~-----------~~l~~~~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 132 NYLLFDAPGW-----------RDLTAIWDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp SSTTBCSTTG-----------GGGGGTCSEEEEECCCHHHHHHHHHHH
T ss_pred ceeccCCchh-----------HHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 9999999841 1122222367888888776 4444544
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.4e-13 Score=136.70 Aligned_cols=105 Identities=17% Similarity=0.090 Sum_probs=78.3
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------------eEEEEecccccCCCCC
Q 008771 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------------LPNYFEQNQAEALDLD 504 (554)
Q Consensus 441 ~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------------~~~y~~Q~~~~~l~~~ 504 (554)
..+||++.+|++++|+||||||||||++.|+|+++|.+|+|.+.+.++ .++|++|++. .+++.
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~~~~ 169 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAA 169 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC---CCCHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-ccCHH
Confidence 457888999999999999999999999999999999999999987543 2578998752 26677
Q ss_pred CCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhccc
Q 008771 505 KTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILL 553 (554)
Q Consensus 505 ~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~ 553 (554)
.|+.+++..+..... + ..++..+|+.. ..++.+..|| |||++
T Consensus 170 ~~v~e~l~~~~~~~~-d--~~lldt~gl~~-~~~~~~~eLS---kqr~~ 211 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGY-D--VVLCDTSGRLH-TNYSLMEELI---ACKKA 211 (302)
T ss_dssp HHHHHHHHHHHHTTC-S--EEEECCCCCSS-CCHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHcCC-c--chHHhcCCCCc-chhHHHHHHH---HHHHH
Confidence 899999876421110 0 12466677643 4567888899 66654
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.17 E-value=6.9e-13 Score=133.66 Aligned_cols=134 Identities=13% Similarity=0.004 Sum_probs=77.8
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHH
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~ 200 (554)
.++.++||+|++|||||||++.|++++.+. |. . ...+.+|+|+..++ ..++++|+.......
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~----~-~~~~~iv~~D~f~~-~~~~~~~l~~~~~~~----------- 90 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG----G-EKSIGYASIDDFYL-THEDQLKLNEQFKNN----------- 90 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG----G-GSCEEEEEGGGGBC-CHHHHHHHHHHTTTC-----------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC----C-CceEEEeccccccC-ChHHHHHHhcccccc-----------
Confidence 357899999999999999999999998763 20 0 11245559997664 446666553210000
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC-------ccccCCCCCCCChhHHHHHHHHHH
Q 008771 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-------ADDGDRLVASFSSGWQMRMSLGKI 273 (554)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-------~~~~~~~~~~LSGGqrqRv~LAra 273 (554)
..+.....+ ...+ ...+.+.+..+.-. ......+-..+||||+||+++|++
T Consensus 91 ~l~~~~g~p------------------~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~ 148 (290)
T 1odf_A 91 KLLQGRGLP------------------GTHD----MKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQK 148 (290)
T ss_dssp GGGSSSCST------------------TSBC----HHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEE
T ss_pred chhhhccCc------------------chhH----HHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccc
Confidence 000000000 0000 11122223322111 111233446899999999999843
Q ss_pred HccCCCeEeecCCCCCCCHHH
Q 008771 274 LLQDPDLLLLDEPTNHLDLDT 294 (554)
Q Consensus 274 L~~~p~lLlLDEPt~~LD~~~ 294 (554)
...+|+|||+||||+++|+..
T Consensus 149 ~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 149 IKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp EESSCSEEEEEESSTTCCCCC
T ss_pred eEcCCCEEEEeCccccCCccc
Confidence 333999999999999999853
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-11 Score=111.64 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=30.7
Q ss_pred eEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCce
Q 008771 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (554)
Q Consensus 112 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G 152 (554)
+|+++ +|+.++|+|+||||||||+++|++.+.+ +|
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g 64 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG 64 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC
Confidence 56665 8999999999999999999999998876 35
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.5e-11 Score=120.75 Aligned_cols=130 Identities=18% Similarity=0.127 Sum_probs=88.1
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCcc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~t 177 (554)
+.++++++.|+... ++++|+ +|++++|+|+||+||||++..|++.+.+..|+|.+.+.+ +. ....
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d---------~~--~~~~ 141 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD---------TQ--RPAA 141 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC---------SS--CHHH
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC---------cc--cHhH
Confidence 45677888886543 788888 999999999999999999999999998888887765322 11 0000
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCC
Q 008771 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (554)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~ 257 (554)
+ +.+. .+.+..|++......
T Consensus 142 ~-~ql~---------------------------------------------------------~~~~~~~l~~~~~~~-- 161 (295)
T 1ls1_A 142 R-EQLR---------------------------------------------------------LLGEKVGVPVLEVMD-- 161 (295)
T ss_dssp H-HHHH---------------------------------------------------------HHHHHHTCCEEECCT--
T ss_pred H-HHHH---------------------------------------------------------HhcccCCeEEEEcCC--
Confidence 0 0000 001122332111000
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEeecCC-CCCCCHHHHHHHHHHHc
Q 008771 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEP-TNHLDLDTIEWLEGYLG 303 (554)
Q Consensus 258 ~~LSGGqrqRv~LAraL~~~p~lLlLDEP-t~~LD~~~~~~l~~~l~ 303 (554)
..+-.+.+|.+|+.+...++|++|+||| +.++|......+.....
T Consensus 162 -~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~ 207 (295)
T 1ls1_A 162 -GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKE 207 (295)
T ss_dssp -TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhh
Confidence 1233455788999998899999999999 99999988877766543
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-13 Score=142.27 Aligned_cols=168 Identities=20% Similarity=0.249 Sum_probs=106.1
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECC-------CEEEEECCCCccHHHHHHHHHCCC----CCCceeEEEcCC-------
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKG-------EKVGLVGVNGAGKTTQLRIIAGQE----EPDSGNVIKAKS------- 159 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~G-------e~~~lvG~NGsGKSTLlk~i~G~~----~p~~G~I~~~~~------- 159 (554)
++.++++..|+...+++++++.|.+| +.++|+||||+|||||+++|+|.+ .+++|.+...+.
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 45567777788888999999999887 899999999999999999999988 677777654321
Q ss_pred ---CceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHH
Q 008771 160 ---NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (554)
Q Consensus 160 ---~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (554)
...|.|++|...+.. ++.+++.... +....+ .+ +......
T Consensus 99 ~~~~~~v~~iDE~~~l~~--~~~e~L~~~~-----------------~~~~~~--i~----------------~~~~~~~ 141 (334)
T 1in4_A 99 SLERGDVLFIDEIHRLNK--AVEELLYSAI-----------------EDFQID--IM----------------IGKGPSA 141 (334)
T ss_dssp HCCTTCEEEEETGGGCCH--HHHHHHHHHH-----------------HTSCCC--C------------------------
T ss_pred HccCCCEEEEcchhhcCH--HHHHHHHHHH-----------------Hhcccc--ee----------------eccCccc
Confidence 235889998766543 5655543210 000000 00 0000112
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEE
Q 008771 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVII 312 (554)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIii 312 (554)
..+...+..+++.. ....+..||+|++||+.++ .+||+.+.+.+.++|+ ..+ +
T Consensus 142 ~~i~~~l~~~~li~--at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~ 198 (334)
T 1in4_A 142 KSIRIDIQPFTLVG--ATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----V 198 (334)
T ss_dssp -------CCCEEEE--EESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----C
T ss_pred ccccccCCCeEEEE--ecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----C
Confidence 23444555666532 4566789999999998655 6667665555555553 233 4
Q ss_pred ecCHHHHHhhcce
Q 008771 313 SHDRAFLDQLCTK 325 (554)
Q Consensus 313 sHd~~~l~~~~d~ 325 (554)
+|+.+.+..+|++
T Consensus 199 ~~~~~~~~~ia~~ 211 (334)
T 1in4_A 199 EIEDAAAEMIAKR 211 (334)
T ss_dssp CBCHHHHHHHHHT
T ss_pred CcCHHHHHHHHHh
Confidence 7898888887765
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.6e-12 Score=117.48 Aligned_cols=94 Identities=13% Similarity=0.166 Sum_probs=57.1
Q ss_pred ceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEecccccCCCCCCCHHHHHHhhcccCCHH
Q 008771 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521 (554)
Q Consensus 442 ~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~ 521 (554)
++||+|.+||+++|+||||||||||++++.+-.. .+. .+...++++|++.... ...++.+++..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~------~~~-~d~~~g~~~~~~~~~~-~~~~~~~~~~~-------- 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE------VIS-SDFCRGLMSDDENDQT-VTGAAFDVLHY-------- 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG------EEE-HHHHHHHHCSSTTCGG-GHHHHHHHHHH--------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe------EEc-cHHHHHHhcCcccchh-hHHHHHHHHHH--------
Confidence 5899999999999999999999999999764221 122 1222356777653222 22223333221
Q ss_pred HHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 522 ~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
... .....+... .......+||||||||+|
T Consensus 65 ~~~-~~~~~g~~~--~~~~~~~~s~g~~qrv~i 94 (171)
T 4gp7_A 65 IVS-KRLQLGKLT--VVDATNVQESARKPLIEM 94 (171)
T ss_dssp HHH-HHHHTTCCE--EEESCCCSHHHHHHHHHH
T ss_pred HHH-HHHhCCCeE--EEECCCCCHHHHHHHHHH
Confidence 111 222344432 334556679999999864
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-12 Score=134.67 Aligned_cols=103 Identities=17% Similarity=0.091 Sum_probs=77.7
Q ss_pred ceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------------eEEEEecccccC-CCCC
Q 008771 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------------LPNYFEQNQAEA-LDLD 504 (554)
Q Consensus 442 ~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------------~~~y~~Q~~~~~-l~~~ 504 (554)
.+||++.+|++++|+||||||||||++.|+|+++|.+|+|.+.+.++ .++|++|++ . +++.
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~--~~~~p~ 226 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEG--DKAKAA 226 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSS--SSCCHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecc--cccChh
Confidence 47788999999999999999999999999999999999999987553 257889874 3 6677
Q ss_pred CCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhccc
Q 008771 505 KTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILL 553 (554)
Q Consensus 505 ~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~ 553 (554)
.|+.+++..+..... + ..++..+|+.. ..++.+..|| +||++
T Consensus 227 ~tv~e~l~~~~~~~~-d--~~lldt~Gl~~-~~~~~~~eLS---kqr~~ 268 (359)
T 2og2_A 227 TVLSKAVKRGKEEGY-D--VVLCDTSGRLH-TNYSLMEELI---ACKKA 268 (359)
T ss_dssp HHHHHHHHHHHHTTC-S--EEEEECCCCSS-CCHHHHHHHH---HHHHH
T ss_pred hhHHHHHHHHHhCCC-H--HHHHHhcCCCh-hhhhHHHHHH---HHHHH
Confidence 899999876432110 0 12456677643 3467788899 66654
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-12 Score=131.23 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=38.9
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEE---cCCCc----------eEEEEeccccc
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK---AKSNM----------KIAFLSQEFEV 172 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~---~~~~~----------~i~~v~Q~~~~ 172 (554)
++..|++++|+|+||||||||+++|+|+..|++|+|.+ +|.+. .+|||+|.|.+
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~ 231 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGF 231 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSS
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCC
Confidence 45579999999999999999999999999999999998 55431 37999999854
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.08 E-value=6.1e-12 Score=127.53 Aligned_cols=101 Identities=17% Similarity=0.090 Sum_probs=71.0
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE---CCcee----------eEEEEeccccc------------
Q 008771 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNV----------LPNYFEQNQAE------------ 499 (554)
Q Consensus 445 ~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~---~~~~~----------~~~y~~Q~~~~------------ 499 (554)
|++..|++++|+||||||||||+++|+|+..|++|+|.+ .|.++ ..+|++|.|..
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 345679999999999999999999999999999999998 55433 24788888641
Q ss_pred --CCCCCCCHHHHHHhhcc---cCCHHHHHHHHhhCCCChhhhccccCcCCh
Q 008771 500 --ALDLDKTVLETVAEAAE---DWRIDDIKGLLGRCNFKADMLDRKVSLLSG 546 (554)
Q Consensus 500 --~l~~~~tv~e~l~~~~~---~~~~~~~~~~L~~~~l~~~~~~~~~~~LSG 546 (554)
.++++.|+ +|+..... ......+..+|+.+++..+..++.|..||+
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 25678888 87765321 122346889999999977778899999996
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-11 Score=127.22 Aligned_cols=90 Identities=14% Similarity=0.115 Sum_probs=66.7
Q ss_pred EEeeeeEe---cCC--ccce---------eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---
Q 008771 426 TIKNLEFG---YED--RLLF---------NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--- 488 (554)
Q Consensus 426 ~~~~l~~~---y~~--~~~l---------~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--- 488 (554)
++++++|. |++ ..++ ++++|.|.+|+.++|+||||||||||+++|+|+++|.+|.|.+++..-
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~ 216 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFL 216 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCc
Confidence 56778877 753 2344 899999999999999999999999999999999999999999986321
Q ss_pred -----eEEEEe-cccccCCCCCCCHHHHHHhhc
Q 008771 489 -----LPNYFE-QNQAEALDLDKTVLETVAEAA 515 (554)
Q Consensus 489 -----~~~y~~-Q~~~~~l~~~~tv~e~l~~~~ 515 (554)
.++|++ |++...+....|+.++|..+.
T Consensus 217 ~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l 249 (361)
T 2gza_A 217 PDHPNHVHLFYPSEAKEEENAPVTAATLLRSCL 249 (361)
T ss_dssp TTCSSEEEEECC----------CCHHHHHHHHT
T ss_pred cccCCEEEEeecCccccccccccCHHHHHHHHH
Confidence 256887 764322236779999998763
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.2e-10 Score=115.61 Aligned_cols=136 Identities=14% Similarity=0.198 Sum_probs=88.2
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHH
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~ 200 (554)
.+|++++|+|+|||||||++..|++.+.+++|. +|.++.+++. ..++.+++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~--------~V~lv~~D~~---r~~a~eqL~~---------------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK--------KIAFITTDTY---RIAAVEQLKT---------------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC--------CEEEEECCCS---STTHHHHHHH----------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--------EEEEEecCcc---cchHHHHHHH----------------
Confidence 479999999999999999999999999887772 4677777752 2233332210
Q ss_pred HHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCe
Q 008771 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280 (554)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~l 280 (554)
+.+.+|++... ..+ +...+.+|++ +.+|++
T Consensus 156 -----------------------------------------~~~~~gl~~~~------~~~-~~~l~~al~~--~~~~dl 185 (296)
T 2px0_A 156 -----------------------------------------YAELLQAPLEV------CYT-KEEFQQAKEL--FSEYDH 185 (296)
T ss_dssp -----------------------------------------HHTTTTCCCCB------CSS-HHHHHHHHHH--GGGSSE
T ss_pred -----------------------------------------HHHhcCCCeEe------cCC-HHHHHHHHHH--hcCCCE
Confidence 01123332110 112 3444666664 489999
Q ss_pred EeecCCCCCCCHHHHHHH---HHHHcc--CCCeEEEE--ecCHHHHHhhcceEEEeeCCeee
Q 008771 281 LLLDEPTNHLDLDTIEWL---EGYLGK--QDVPMVII--SHDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 281 LlLDEPt~~LD~~~~~~l---~~~l~~--~g~tvIii--sHd~~~l~~~~d~i~~l~~g~~~ 335 (554)
+|+| |+++|+.....+ ...+.. ...+++++ +|+...+.++++++..+..+.++
T Consensus 186 vIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 186 VFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYI 245 (296)
T ss_dssp EEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEE
T ss_pred EEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEE
Confidence 9999 889998654433 334431 22345555 99999999999987766655543
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.4e-12 Score=128.58 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=49.0
Q ss_pred eeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC-CCCCceEEEECCcee-------eEEEEeccccc
Q 008771 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL-EKPRGGEVLLGEHNV-------LPNYFEQNQAE 499 (554)
Q Consensus 428 ~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~-~~p~~G~i~~~~~~~-------~~~y~~Q~~~~ 499 (554)
+|+++.|+++.++++++|+| +|+|+||+|||||++.|+|. ..|.+| +.+.|.++ ..+|+.|..
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~-- 72 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEER-- 72 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC----
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCC--
Confidence 47888898888999999998 99999999999999999998 888888 65443322 134666652
Q ss_pred CCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 500 ALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 500 ~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.+....||.|++.........+..+.++.. + .+..++.+..+|||+|||+.+
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l-~~~~~~~~~~~sgg~rqrv~~ 124 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISY--I-DEQFERYLHDESGLNRRHIID 124 (301)
T ss_dssp -CCEEEEEEEEC-----------CTTHHHH--H-HHHHHHHHHHHTSSCCTTCCC
T ss_pred CcccCcchhhhhhhhhhcCcHHHHHHHHHH--H-HHHHHHHHHHhCHHhhhhhhh
Confidence 344455666654332110000000111111 1 133567889999999999863
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=5e-14 Score=140.98 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=41.0
Q ss_pred CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCC
Q 008771 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159 (554)
Q Consensus 109 ~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~ 159 (554)
...+|+++++.+++| ++|+||||||||||+++|+|...+ |.|.+++.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~ 78 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGP 78 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETT
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcH
Confidence 345789999999999 999999999999999999999876 67777654
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=2e-13 Score=129.91 Aligned_cols=57 Identities=19% Similarity=0.161 Sum_probs=39.6
Q ss_pred HHH-HHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeC
Q 008771 270 LGK-ILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331 (554)
Q Consensus 270 LAr-aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~ 331 (554)
.++ +++.+|.+++|||||+++|..+.+.+.+.|.....- +.++|. . ..+|+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~~~a~~--~--~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-MESSKE--P--GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-TTGGGS--T--TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHhhc--c--CCceEEEECCC
Confidence 456 788999999999999999988777776655431111 244562 1 56899987753
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.4e-11 Score=122.07 Aligned_cols=105 Identities=14% Similarity=0.095 Sum_probs=74.2
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE---CCcee----------eEEEEecccccC---CCCCCCHHH
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNV----------LPNYFEQNQAEA---LDLDKTVLE 509 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~---~~~~~----------~~~y~~Q~~~~~---l~~~~tv~e 509 (554)
++..|++++|+||||||||||+++|+ +..|.+|+|.+ .|..+ ..+|++|.|.-. +++..|+ +
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 34569999999999999999999999 99999999988 55432 247899987321 1246788 7
Q ss_pred HHHhhcc---------------cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcc
Q 008771 510 TVAEAAE---------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIIL 552 (554)
Q Consensus 510 ~l~~~~~---------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl 552 (554)
++..... ......++++|+.+++.....++++..|||.+++++
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~ 296 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIK 296 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHH
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7732111 111235889999999986678899999998655554
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.03 E-value=4.8e-12 Score=118.32 Aligned_cols=80 Identities=19% Similarity=0.118 Sum_probs=49.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEEC----CceeeEEEEecccccCCCCCCCHHHHHHhhcccCCHHHHHHH
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLG----EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGL 526 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~p~-~G~i~~~----~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~ 526 (554)
+++|+||||||||||+++|+|++... .|...-. ...-.++|++|+. ++.++ +
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~--------~~~~~---------------~ 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT--------EGKKK---------------I 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET--------TCCEE---------------E
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC--------cHHHH---------------H
Confidence 68999999999999999999998532 2321100 0011346777753 11111 1
Q ss_pred HhhCCCCh-hhhccccCcCChhhhhcccC
Q 008771 527 LGRCNFKA-DMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 527 L~~~~l~~-~~~~~~~~~LSGGek~Rl~l 554 (554)
++.+++.. +.+++++..||||||||++|
T Consensus 59 ~~~~~~~~~~~~~~~~~~lSgG~~qr~~l 87 (178)
T 1ye8_A 59 FSSKFFTSKKLVGSYGVNVQYFEELAIPI 87 (178)
T ss_dssp EEETTCCCSSEETTEEECHHHHHHHHHHH
T ss_pred HHhhcCCccccccccccCcCHHHHHHHHH
Confidence 22333322 24678899999999999864
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-10 Score=111.34 Aligned_cols=90 Identities=9% Similarity=-0.084 Sum_probs=64.6
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEecccccCCCCCCCHHHHHHhhcc---cCCHHHH
Q 008771 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE---DWRIDDI 523 (554)
Q Consensus 447 i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~~~~~~~ 523 (554)
..+|+++||+|+||||||||+++|+|++.| .++|++|+....-....|+.+++..... ......+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE------------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALY 70 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC------------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHH
Confidence 578999999999999999999999998765 2568888753211245688887653321 2234556
Q ss_pred HHHHhhCCCChhhhccccCcCChhhh
Q 008771 524 KGLLGRCNFKADMLDRKVSLLSGGEK 549 (554)
Q Consensus 524 ~~~L~~~~l~~~~~~~~~~~LSGGek 549 (554)
...+..+++. +.+.+++..+|+|++
T Consensus 71 ~~~l~~~~~~-~~~~~~~~~~s~g~~ 95 (211)
T 3asz_A 71 LEHAQALLRG-LPVEMPVYDFRAYTR 95 (211)
T ss_dssp HHHHHHHHTT-CCEEECCEETTTTEE
T ss_pred HHHHHHHHcC-CCcCCCcccCcccCC
Confidence 7777777764 356788999999975
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=6.6e-11 Score=126.53 Aligned_cols=59 Identities=20% Similarity=0.184 Sum_probs=50.6
Q ss_pred EEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC
Q 008771 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160 (554)
Q Consensus 99 ~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~ 160 (554)
.+.+++.. +..+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 8 ~l~~l~~~--~~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 66 (483)
T 3euj_A 8 KFRSLTLI--NWNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTT 66 (483)
T ss_dssp EEEEEEEE--EETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTT
T ss_pred ceeEEEEe--ccccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 34454432 34589999999999 9999999999999999999999999999999988753
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-09 Score=106.24 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=41.8
Q ss_pred cCCCeEeecCCCCCC--CHHH----HHHHHHHHccCCCeEEEEecCHHH--------HHhhcceEEEeeC
Q 008771 276 QDPDLLLLDEPTNHL--DLDT----IEWLEGYLGKQDVPMVIISHDRAF--------LDQLCTKIVETEM 331 (554)
Q Consensus 276 ~~p~lLlLDEPt~~L--D~~~----~~~l~~~l~~~g~tvIiisHd~~~--------l~~~~d~i~~l~~ 331 (554)
.+|+++++|+|++.+ |+.. ...|.+.+++.|.|||+++|.... +.+.||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 5422 233444556789999999998775 4578999999964
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.4e-10 Score=117.50 Aligned_cols=99 Identities=18% Similarity=0.208 Sum_probs=70.7
Q ss_pred ceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHhhHHHHHHHH
Q 008771 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (554)
Q Consensus 115 ~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 194 (554)
.++|...+|++++|+|+|||||||+++.|++.+.+..|+|.+.+ .+.. .....+.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~---------~D~~---r~~a~eq------------- 150 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA---------ADTF---RAAAIEQ------------- 150 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE---------ECTT---CHHHHHH-------------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc---------cccc---cHHHHHH-------------
Confidence 35666788999999999999999999999999988877776542 2211 0000010
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHH---HHH
Q 008771 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM---SLG 271 (554)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv---~LA 271 (554)
+..+++.+|++. +..+|||+.+++ +|+
T Consensus 151 --------------------------------------------L~~~~~~~gl~~------~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 151 --------------------------------------------LKIWGERVGATV------ISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp --------------------------------------------HHHHHHHHTCEE------ECCSTTCCHHHHHHHHHH
T ss_pred --------------------------------------------HHHHHHHcCCcE------EecCCccCHHHHHHHHHH
Confidence 011122335431 236789999999 999
Q ss_pred HHHccCCCeEeecCCCC
Q 008771 272 KILLQDPDLLLLDEPTN 288 (554)
Q Consensus 272 raL~~~p~lLlLDEPt~ 288 (554)
+++..+|+++|+|||..
T Consensus 181 ~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 181 HALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHTTCSEEEEEECCC
T ss_pred HHHhcCCCEEEEECCCc
Confidence 99999999999999975
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.01 E-value=2.3e-11 Score=125.44 Aligned_cols=106 Identities=17% Similarity=0.064 Sum_probs=69.8
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEEC-Cce------eeEEEEecccccCCCCCCCHHHHHH
Q 008771 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-PRGGEVLLG-EHN------VLPNYFEQNQAEALDLDKTVLETVA 512 (554)
Q Consensus 441 ~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~-p~~G~i~~~-~~~------~~~~y~~Q~~~~~l~~~~tv~e~l~ 512 (554)
+++++. .+|++++|+|+||||||||+++|+|... |..|.|.+. |.. ...+|++|+. .+....+|.++.
T Consensus 207 ~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~--~l~dtpgv~e~~- 282 (358)
T 2rcn_A 207 KPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGG--DVIDSPGVREFG- 282 (358)
T ss_dssp HHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSC--EEEECHHHHTCC-
T ss_pred HHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCC--EecCcccHHHhh-
Confidence 444443 4799999999999999999999999999 999999875 421 2356778764 244445666531
Q ss_pred hhcccCCHH----HHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 513 EAAEDWRID----DIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 513 ~~~~~~~~~----~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
....... .+.+++..+++. +..++++..|| ||++|++|
T Consensus 283 --l~~l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~lS-G~~~r~al 324 (358)
T 2rcn_A 283 --LWHLEPEQITQGFVEFHDYLGHC-KYRDCKHDADP-GCAIREAV 324 (358)
T ss_dssp --CCCCCHHHHHHTSGGGGGGTTCS-SSTTCCSSSCT-TCHHHHHH
T ss_pred --hcCCCHHHHHHHHHHHHHHcCCc-hhcCCCcccCC-HHHHHHHH
Confidence 1112222 234567777874 45789999999 99999864
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.3e-11 Score=123.14 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=43.0
Q ss_pred EEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEE---cCCCc---------eEEEEeccccccc----CccHHHH
Q 008771 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK---AKSNM---------KIAFLSQEFEVSM----SRTVREE 181 (554)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~---~~~~~---------~i~~v~Q~~~~~~----~~tv~e~ 181 (554)
+++.+|++++|+|+||+|||||+++|+|+..|+.|+|.+ .|... .++|++|.|.+.. ..|+ ++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 566789999999999999999999999999999999987 44321 1689999987654 5678 77
Q ss_pred HHHhh
Q 008771 182 FMSAF 186 (554)
Q Consensus 182 ~~~~~ 186 (554)
+...+
T Consensus 247 l~~~f 251 (307)
T 1t9h_A 247 LGYTF 251 (307)
T ss_dssp HGGGS
T ss_pred HHHHH
Confidence 74333
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-10 Score=122.54 Aligned_cols=50 Identities=20% Similarity=0.149 Sum_probs=47.0
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee
Q 008771 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (554)
Q Consensus 438 ~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~ 488 (554)
.+|+++||+|.+ |+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 479999999999 99999999999999999999999999999999988654
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.1e-11 Score=129.95 Aligned_cols=174 Identities=15% Similarity=0.162 Sum_probs=96.8
Q ss_pred ceeEEEECCCEEEEECCCCccHHHHHHHHHC--CCCCCceeEEEcCCCceEEEEecccccccCc--cHHHHHHHhhHHHH
Q 008771 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--QEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR--TVREEFMSAFKEEM 190 (554)
Q Consensus 115 ~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G--~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~--tv~e~~~~~~~~~~ 190 (554)
.+++.+.++..+.|+|.+||||||+++.|.. ++.++.|++.+...+.+- .-++.....+.. +|..+...+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~-~el~~~~~lPhl~~~Vvtd~~~a~---- 233 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM-LELSVYEGIPHLLTEVVTDMKDAA---- 233 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS-SGGGGGTTCTTBSSSCBCSHHHHH----
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch-hhhhhhccCCcccceeecCHHHHH----
Confidence 3678888999999999999999999999876 455555666543222110 001111111211 1211111000
Q ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccc-cC-CCCCCCChhHHHHH
Q 008771 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD-GD-RLVASFSSGWQMRM 268 (554)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~-~~-~~~~~LSGGqrqRv 268 (554)
..+..+ ..++++|. ++|..+|+.... .+ +....+|+||+|+.
T Consensus 234 ---~~L~~~--------------------------------~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~ 277 (512)
T 2ius_A 234 ---NALRWC--------------------------------VNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPD 277 (512)
T ss_dssp ---HHHHHH--------------------------------HHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBC
T ss_pred ---HHHHHH--------------------------------HHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccc
Confidence 000000 11233343 445556653211 01 11134677876642
Q ss_pred ----------HHHHHHccCCC-eEeecCCCCCCCHHH---HHHHHHHH---ccCCCeEEEEecCHH-------HHHhhcc
Q 008771 269 ----------SLGKILLQDPD-LLLLDEPTNHLDLDT---IEWLEGYL---GKQDVPMVIISHDRA-------FLDQLCT 324 (554)
Q Consensus 269 ----------~LAraL~~~p~-lLlLDEPt~~LD~~~---~~~l~~~l---~~~g~tvIiisHd~~-------~l~~~~d 324 (554)
.+|+++...|. ++++||++..+|... .+.|..+. ++.|.++|++||++. ...++.+
T Consensus 278 ~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~ 357 (512)
T 2ius_A 278 PYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPT 357 (512)
T ss_dssp TTC---------CCBCCCCCEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCE
T ss_pred cccccccchhccccccccCCcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCC
Confidence 35667788898 899999999998432 22222222 346999999999987 5667777
Q ss_pred eEEEe
Q 008771 325 KIVET 329 (554)
Q Consensus 325 ~i~~l 329 (554)
||++-
T Consensus 358 RI~lr 362 (512)
T 2ius_A 358 RIAFT 362 (512)
T ss_dssp EEEEC
T ss_pred eEEEE
Confidence 87653
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=98.87 E-value=7.7e-11 Score=120.89 Aligned_cols=50 Identities=20% Similarity=0.285 Sum_probs=47.0
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008771 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (554)
Q Consensus 438 ~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~ 487 (554)
.++++++|.|.+|+.++|+||||||||||+++|+|+++|++|.|.+++.+
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~ 208 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee
Confidence 47899999999999999999999999999999999999999999998753
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.6e-11 Score=126.26 Aligned_cols=122 Identities=20% Similarity=0.245 Sum_probs=81.5
Q ss_pred EEeeeeEecCCccceeceEEEEecC-------CEEEEECCCCCcHHHHHHHHhCCC----CCCceEEEECCcee------
Q 008771 426 TIKNLEFGYEDRLLFNRANLTIERG-------EKTAIIGPNGCGKSTLLKLIMGLE----KPRGGEVLLGEHNV------ 488 (554)
Q Consensus 426 ~~~~l~~~y~~~~~l~~vs~~i~~G-------e~iaIvG~NGsGKSTLlk~L~G~~----~p~~G~i~~~~~~~------ 488 (554)
+.++++..|+...+++++++.|..| +.++|+||||||||||+++|+|.+ .+.+|.+...+.++
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~ 99 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTS 99 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHH
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHH
Confidence 3455666677667888899999877 899999999999999999999987 66677665433221
Q ss_pred ----eEEEEecccccCCCCCCCHHHHHHhhcccC----------CHHHHHHHHhhCCCChhhhccccCcCChhhhhccc
Q 008771 489 ----LPNYFEQNQAEALDLDKTVLETVAEAAEDW----------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILL 553 (554)
Q Consensus 489 ----~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~----------~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~ 553 (554)
.+.|++|.+ .+.. ++.+++....... ....+...+..+++-. ...++..||+|+++|+.
T Consensus 100 ~~~~~v~~iDE~~--~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~--at~~~~~Ls~~l~sR~~ 172 (334)
T 1in4_A 100 LERGDVLFIDEIH--RLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG--ATTRSGLLSSPLRSRFG 172 (334)
T ss_dssp CCTTCEEEEETGG--GCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE--EESCGGGSCHHHHTTCS
T ss_pred ccCCCEEEEcchh--hcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE--ecCCcccCCHHHHHhcC
Confidence 356778764 3433 6777775332111 1123445566677643 57788999999999985
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.84 E-value=2.8e-10 Score=121.34 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=60.3
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------------eEEEEecccccCCCCC
Q 008771 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------------LPNYFEQNQAEALDLD 504 (554)
Q Consensus 441 ~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------------~~~y~~Q~~~~~l~~~ 504 (554)
+++||++.+|++++|+|+||||||||+++|+|+++|.+|+|.+.+.+. .++|++|+. .+++.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~--~~~p~ 361 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHT--GADSA 361 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCST--TCCHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEeccc--CcCHH
Confidence 578899999999999999999999999999999999999999864332 246888874 45677
Q ss_pred CCHHHHHHhh
Q 008771 505 KTVLETVAEA 514 (554)
Q Consensus 505 ~tv~e~l~~~ 514 (554)
.+|.+++..+
T Consensus 362 ~tV~e~l~~a 371 (503)
T 2yhs_A 362 SVIFDAIQAA 371 (503)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7899998754
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-10 Score=115.18 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=50.0
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCcee
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNV 488 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~-~G~i~~~~~~~ 488 (554)
++++++++. .+|++++ +.+|++++|+||||||||||+++|+|+++|. +|.|.+.+.++
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI 64 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc
Confidence 456666653 4789998 9999999999999999999999999999998 99998887654
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-10 Score=108.30 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=31.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCce
Q 008771 451 EKTAIIGPNGCGKSTLLKLIMGLEKPR---GGEVLLGEHN 487 (554)
Q Consensus 451 e~iaIvG~NGsGKSTLlk~L~G~~~p~---~G~i~~~~~~ 487 (554)
++++|+|+||||||||+++|+|+++|. .|.|.+++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 589999999999999999999999998 8999988754
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.5e-10 Score=107.09 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=41.5
Q ss_pred eEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCC----------CceEEEEecccccccCccHHH
Q 008771 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----------NMKIAFLSQEFEVSMSRTVRE 180 (554)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~----------~~~i~~v~Q~~~~~~~~tv~e 180 (554)
|+++.+|++++|+||||||||||+++|+|+++ .+.+.+. ...++|++|++..+..+++.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEG 70 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHT
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcC
Confidence 67888999999999999999999999999974 3443321 124778888876554444433
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.81 E-value=3.4e-10 Score=106.66 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=37.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEecc
Q 008771 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (554)
Q Consensus 450 Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q~ 496 (554)
||+++|+||||||||||+++|+|+++ ++| |.++|.+. ..+|++|+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~ 53 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVT 53 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEe
Confidence 79999999999999999999999999 889 87765433 23566665
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.80 E-value=1e-10 Score=113.35 Aligned_cols=55 Identities=24% Similarity=0.279 Sum_probs=43.0
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCC
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~ 159 (554)
.|+++|+...|+. +|+|.+ ++++|+||||||||||+++|+|++.|++|.|.++|.
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~ 63 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNT 63 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-----
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCE
Confidence 4788888765532 566666 899999999999999999999999999999988763
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-09 Score=110.71 Aligned_cols=64 Identities=17% Similarity=0.263 Sum_probs=54.3
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------------eEEEEecccccCCCCCCCHHHHHH
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------------LPNYFEQNQAEALDLDKTVLETVA 512 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------------~~~y~~Q~~~~~l~~~~tv~e~l~ 512 (554)
+|++++|+||||||||||+++|+|+++|++|+|.+.+.++ .++|++|++ .+++..++.+++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~--~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPE--GTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCT--TCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCC--CCCHHHHHHHHHH
Confidence 6999999999999999999999999999999999987654 146888875 4667778999886
Q ss_pred hh
Q 008771 513 EA 514 (554)
Q Consensus 513 ~~ 514 (554)
.+
T Consensus 179 ~~ 180 (304)
T 1rj9_A 179 AM 180 (304)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.78 E-value=6.9e-10 Score=112.25 Aligned_cols=103 Identities=17% Similarity=0.074 Sum_probs=59.4
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE---CCcee-------e--EEEEecccccCC-CC-CCCHHHHH
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNV-------L--PNYFEQNQAEAL-DL-DKTVLETV 511 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~---~~~~~-------~--~~y~~Q~~~~~l-~~-~~tv~e~l 511 (554)
++.+|++++|+|+||+|||||+++|+|...|..|.|.+ .|..+ . .+|+.|.|.-.. .+ ..|+ +++
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l 247 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EEL 247 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHH
Confidence 34579999999999999999999999999999999987 44322 1 478999874221 11 5788 887
Q ss_pred Hhhcc-----------------cCCHHHHHHHHhhCCCChhhhccccCcCChhhhh
Q 008771 512 AEAAE-----------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKI 550 (554)
Q Consensus 512 ~~~~~-----------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~ 550 (554)
....+ ......++++|+.+++.....+ +...|+.|.++
T Consensus 248 ~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~-~y~~lls~~~~ 302 (307)
T 1t9h_A 248 GYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYD-HYVEFMTEIKD 302 (307)
T ss_dssp GGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHH-HHHHHHHHHhh
Confidence 32111 1112358889999999754434 44455556655
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-09 Score=120.76 Aligned_cols=180 Identities=14% Similarity=0.153 Sum_probs=101.7
Q ss_pred EeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCc-eeEEEcCCC-----ceEEEEeccccccc
Q 008771 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS-GNVIKAKSN-----MKIAFLSQEFEVSM 174 (554)
Q Consensus 101 ~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~-G~I~~~~~~-----~~i~~v~Q~~~~~~ 174 (554)
++++.-|+...+++++++.+..|+.++|+||||+|||||+++|+++.++.. |.+.+.+.. ..++|+|+....
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~-- 115 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGR-- 115 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHH--
T ss_pred cccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHH--
Confidence 344445777889999999999999999999999999999999999999887 677665432 357787765311
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCc---ccHHHHHHHHhhhcCCCcc
Q 008771 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL---DTLDAKVSKLMPELGFTAD 251 (554)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~lgl~~~ 251 (554)
.+.+............. ......... ....+. .+. .+..... .........++..+...
T Consensus 116 --~~~e~~~~~~~~~~~~r-~~~~~~~~~-~~~~nl-~v~-----------~~~~~~~~~v~~~~~~~~~L~G~~~~~-- 177 (604)
T 3k1j_A 116 --RIVEKYREKAKSQESVK-SSNMRLKST-VLVPKL-LVD-----------NCGRTKAPFIDATGAHAGALLGDVRHD-- 177 (604)
T ss_dssp --HHHHHHHHHHHHHTCC-------------CCCEE-EEC-----------CTTCSSCCEEECTTCCHHHHHCEECCC--
T ss_pred --HHHHHHHHhhccchhhh-hhccccccc-ccccce-eec-----------cccCCCCCEEEcCCCCHHhcCceEEec--
Confidence 11111100000000000 000000000 000000 000 0000000 00000112222222111
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc
Q 008771 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (554)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 303 (554)
......+|+|++|++..++....++.+|+|||... |++.....|.+.|.
T Consensus 178 --~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le 226 (604)
T 3k1j_A 178 --PFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQ 226 (604)
T ss_dssp --CC----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHH
T ss_pred --hhhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHH
Confidence 11225699999999999999999999999999988 89999999988885
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-09 Score=103.18 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=26.8
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008771 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (554)
Q Consensus 438 ~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p 476 (554)
+++++ .+|.+||+++|+||||||||||+++|+|+++.
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~ 46 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN 46 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 46676 69999999999999999999999999999863
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-09 Score=100.54 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=62.0
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE---------ECC-------ceeeEEEEecccccCCCCC
Q 008771 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL---------LGE-------HNVLPNYFEQNQAEALDLD 504 (554)
Q Consensus 441 ~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~---------~~~-------~~~~~~y~~Q~~~~~l~~~ 504 (554)
++++|++.+| +++|+||||||||||+++|.+++.+..|... ..+ ....+..++|++...++++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6788999999 9999999999999999999998877655321 111 1123456677754444332
Q ss_pred ---CCHHHHHHhh--------cccCCHHHHHHHHhhCCCChhhh
Q 008771 505 ---KTVLETVAEA--------AEDWRIDDIKGLLGRCNFKADML 537 (554)
Q Consensus 505 ---~tv~e~l~~~--------~~~~~~~~~~~~L~~~~l~~~~~ 537 (554)
.+|...+... .......++..+|..++|.++..
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~~ 140 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDGY 140 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTCT
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCCC
Confidence 2222221110 11234678899999999976543
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.75 E-value=2.8e-09 Score=115.39 Aligned_cols=50 Identities=24% Similarity=0.295 Sum_probs=46.1
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008771 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (554)
Q Consensus 438 ~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~ 487 (554)
.++++++|.|.+|+.++|+||||||||||+++|+|+++|++|.|.+.+..
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 46788999999999999999999999999999999999999999987653
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2e-10 Score=116.68 Aligned_cols=85 Identities=18% Similarity=0.123 Sum_probs=65.3
Q ss_pred eEEEeeeeEecCCccceeceEEEE-------------------ecCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEE
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTI-------------------ERGEKTAIIGPNGCGKSTLLKLIMGLEK--PRGGEVL 482 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i-------------------~~Ge~iaIvG~NGsGKSTLlk~L~G~~~--p~~G~i~ 482 (554)
.|+++++++.|. +++++++|.+ .+|++|||+|+||||||||+++|+|++. |++|.|.
T Consensus 37 ~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 477899999994 5888999988 9999999999999999999999999988 9999998
Q ss_pred E---CCceee------EEEEecccccCCCCCCCHHHHHHh
Q 008771 483 L---GEHNVL------PNYFEQNQAEALDLDKTVLETVAE 513 (554)
Q Consensus 483 ~---~~~~~~------~~y~~Q~~~~~l~~~~tv~e~l~~ 513 (554)
+ ++.... .+++ |+. .++...++.+++..
T Consensus 115 vi~~d~~~~~~~~~~~~~~v-q~~--~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 115 LITTDGFLHPNQVLKERGLM-KKK--GFPESYDMHRLVKF 151 (308)
T ss_dssp EEEGGGGBCCHHHHHHHTCT-TCT--TSGGGBCHHHHHHH
T ss_pred EEecCCccCcHHHHHhCCEe-ecC--CCCCCccHHHHHHH
Confidence 8 654321 1233 432 23455577776543
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.74 E-value=7.1e-09 Score=110.93 Aligned_cols=178 Identities=14% Similarity=0.080 Sum_probs=102.0
Q ss_pred eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHhhHHH
Q 008771 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEE 189 (554)
Q Consensus 110 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~ 189 (554)
.+.|+++..-+++|+.+.|.|++|+|||||+..|++...+..| ..|.|+.-+ ++..+........
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g--------~~Vl~~s~E------~s~~~l~~r~~~~- 254 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN--------ENVAIFSLE------MSAQQLVMRMLCA- 254 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS--------CCEEEEESS------SCHHHHHHHHHHH-
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC--------CcEEEEECC------CCHHHHHHHHHHH-
Confidence 3468888878999999999999999999999999987655333 134555533 2222111000000
Q ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHH
Q 008771 190 MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269 (554)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~ 269 (554)
.. ..+ ...+. ...+... ...++.+.+..++......+. ...+|.++.+ +
T Consensus 255 ------------~~--~~~-~~~l~------------~g~l~~~-~~~~~~~a~~~l~~~~l~i~d-~~~~s~~~i~--~ 303 (454)
T 2r6a_A 255 ------------EG--NIN-AQNLR------------TGKLTPE-DWGKLTMAMGSLSNAGIYIDD-TPSIRVSDIR--A 303 (454)
T ss_dssp ------------HH--TCC-HHHHH------------TSCCCHH-HHHHHHHHHHHHHSSCEEEEC-CTTCCHHHHH--H
T ss_pred ------------Hc--CCC-HHHHh------------cCCCCHH-HHHHHHHHHHHHhcCCEEEEC-CCCCCHHHHH--H
Confidence 00 000 00000 0000000 111233333333322222222 3579999987 4
Q ss_pred HHHHHc--cCCCeEeecCCCCCCCH--------HHHHHHHHHH----ccCCCeEEEEec---------C--HH-------
Q 008771 270 LGKILL--QDPDLLLLDEPTNHLDL--------DTIEWLEGYL----GKQDVPMVIISH---------D--RA------- 317 (554)
Q Consensus 270 LAraL~--~~p~lLlLDEPt~~LD~--------~~~~~l~~~l----~~~g~tvIiisH---------d--~~------- 317 (554)
.++.+. .+|+++|+|+++...+. .....+...| ++.+.+||+++| | +.
T Consensus 304 ~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~S 383 (454)
T 2r6a_A 304 KCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRES 383 (454)
T ss_dssp HHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTT
T ss_pred HHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhcc
Confidence 555554 78999999999998743 2223333333 467999999999 3 22
Q ss_pred -HHHhhcceEEEeeCCe
Q 008771 318 -FLDQLCTKIVETEMGV 333 (554)
Q Consensus 318 -~l~~~~d~i~~l~~g~ 333 (554)
.+.+.||.|++|..+.
T Consensus 384 g~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 384 GSIEQDADIVAFLYRDD 400 (454)
T ss_dssp CSHHHHCSEEEEEEETT
T ss_pred chhHhhCCEEEEEeccc
Confidence 4677899999997654
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.74 E-value=7.7e-09 Score=105.61 Aligned_cols=33 Identities=33% Similarity=0.486 Sum_probs=29.0
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 441 ~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
.+++|++.+| +.+|+|+||||||||+++|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 3578888899 99999999999999999998543
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-08 Score=105.69 Aligned_cols=69 Identities=13% Similarity=0.213 Sum_probs=47.4
Q ss_pred HHHHHHHHHccC--CCeEeecCCCCCC----------CH----HH---HHHHHH---HHccCCCeEEEEecCHH------
Q 008771 266 MRMSLGKILLQD--PDLLLLDEPTNHL----------DL----DT---IEWLEG---YLGKQDVPMVIISHDRA------ 317 (554)
Q Consensus 266 qRv~LAraL~~~--p~lLlLDEPt~~L----------D~----~~---~~~l~~---~l~~~g~tvIiisHd~~------ 317 (554)
+-+.++++++.+ |+++|+|||++.+ |. .. .+.+.+ .+++.+.|||+++|-..
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345677777654 9999999999998 32 11 122222 34667999999999653
Q ss_pred ----------HHHhhcceEEEeeCCee
Q 008771 318 ----------FLDQLCTKIVETEMGVS 334 (554)
Q Consensus 318 ----------~l~~~~d~i~~l~~g~~ 334 (554)
.+..+||.++.++.+..
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~ 232 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIET 232 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEE
T ss_pred CCCcccCCchHhhhccceEEEEEEeee
Confidence 25678999988877654
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-10 Score=119.75 Aligned_cols=63 Identities=21% Similarity=0.208 Sum_probs=55.0
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~ 487 (554)
++++++++.|+...++++++|++.+|++++|+|+||||||||+++|+|++.|++|+|.+.+.+
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d 92 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 92 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEc
Confidence 455667777765678999999999999999999999999999999999999999999876543
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=3e-11 Score=120.78 Aligned_cols=106 Identities=15% Similarity=0.172 Sum_probs=64.2
Q ss_pred ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee----------EEEEecccccCCCCCCC
Q 008771 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYFEQNQAEALDLDKT 506 (554)
Q Consensus 437 ~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~----------~~y~~Q~~~~~l~~~~t 506 (554)
..+|++++|.+.+| ++|+||||||||||+++|+|...+ |.+.+.+.++. +++++|... ...+..+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~-~~~p~i~ 107 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAK-NSAPCVI 107 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHH-HTCSEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHH-hcCCCeE
Confidence 34788899999999 999999999999999999999887 67777765441 122333210 1122223
Q ss_pred HHHHHHhhcccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 507 VLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 507 v~e~l~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+.|++.......... ..+......++.+..|||||++|+.|
T Consensus 108 ~~Deid~~~~~r~~~-------~~~~~~~~~~~~l~~Lsgg~~~~~~i 148 (274)
T 2x8a_A 108 FFDEVDALCPRRSDR-------ETGASVRVVNQLLTEMDGLEARQQVF 148 (274)
T ss_dssp EEETCTTTCC----------------CTTHHHHHHHHHHTCCSTTCEE
T ss_pred eeehhhhhhcccCCC-------cchHHHHHHHHHHHhhhcccccCCEE
Confidence 333332211100000 00111234677888999999998653
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.71 E-value=2.2e-12 Score=129.12 Aligned_cols=56 Identities=29% Similarity=0.392 Sum_probs=47.1
Q ss_pred EEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcC
Q 008771 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (554)
Q Consensus 99 ~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~ 158 (554)
+++++.+.|+...+++++++++++| ++|+||||||||||+++|++... .|.|.+++
T Consensus 51 ~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~ 106 (278)
T 1iy2_A 51 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 106 (278)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecH
Confidence 4566777777677899999999999 99999999999999999999875 67776653
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.6e-09 Score=102.49 Aligned_cols=38 Identities=21% Similarity=0.125 Sum_probs=22.9
Q ss_pred eeEEceeEEEECCCEEEEECCCCccHHHHHHHHH-CCCC
Q 008771 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA-GQEE 148 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~-G~~~ 148 (554)
...+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4688999999999999999999999999999999 9983
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.70 E-value=6.2e-10 Score=123.32 Aligned_cols=86 Identities=24% Similarity=0.327 Sum_probs=49.4
Q ss_pred eEEEeeeeEecCC--ccceece----------EEEEecCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCcee--
Q 008771 424 VVTIKNLEFGYED--RLLFNRA----------NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-RGGEVLLGEHNV-- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~--~~~l~~v----------s~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p-~~G~i~~~~~~~-- 488 (554)
.++++++++.|+. +++++.+ +|+++. +||+|+||||||||+++|+|+..| ++|.|.++|.++
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 5788999999964 2333332 366654 999999999999999999999989 799998887664
Q ss_pred -----------eEEEEecccccCCCCCCCHHHHHHhh
Q 008771 489 -----------LPNYFEQNQAEALDLDKTVLETVAEA 514 (554)
Q Consensus 489 -----------~~~y~~Q~~~~~l~~~~tv~e~l~~~ 514 (554)
.++|++|++ .+.+..||.+++..+
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~--~l~~~~tv~e~i~~~ 121 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEI--EISDASEVEKEINKA 121 (608)
T ss_dssp EECSSSSCCEEEESCC---C--CCCCHHHHHTTHHHH
T ss_pred ecCCccccceeEEeeecccc--cCCCHHHHHHHHHHH
Confidence 235778874 466778999988654
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.4e-09 Score=101.43 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=40.7
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCceee------EEEEeccc
Q 008771 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP--RGGEVLLGEHNVL------PNYFEQNQ 497 (554)
Q Consensus 445 ~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p--~~G~i~~~~~~~~------~~y~~Q~~ 497 (554)
-.+++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+.. ++|++|++
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~ 71 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNH 71 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCH
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCH
Confidence 46899999999999999999999999999986 6888877654332 35788764
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-08 Score=95.56 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=31.0
Q ss_pred HHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc
Q 008771 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (554)
Q Consensus 267 Rv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 303 (554)
.+.+|++|+.+|+++++| ||++|..+++.+.+.+.
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTIL 187 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHH
Confidence 367899999999999999 99999999988887764
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.4e-09 Score=106.88 Aligned_cols=52 Identities=31% Similarity=0.407 Sum_probs=36.4
Q ss_pred ccEEEEeE-EEEe-CCeeeEEceeEEEEC---CCEEEEECCCCccHHHHHHHHHCCC
Q 008771 96 SGVKLENI-SKSY-KGVTVLKDVTWEVKK---GEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 96 ~~i~~~~l-s~~y-~~~~~l~~isl~i~~---Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
++|+++|+ +|+| ++.++|+|+||+|.+ |++++|+|++||||||++++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 46999999 9999 777899999999999 9999999999999999999999865
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.63 E-value=6.8e-09 Score=100.57 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=22.9
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHh-CCC
Q 008771 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM-GLE 474 (554)
Q Consensus 439 ~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~-G~~ 474 (554)
...++||++.+|++++|+||||||||||+++|+ |++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 457899999999999999999999999999999 998
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=5.4e-09 Score=106.89 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=54.9
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee----------------EEEEecccccCCCCCCCHHHH
Q 008771 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------------PNYFEQNQAEALDLDKTVLET 510 (554)
Q Consensus 447 i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~----------------~~y~~Q~~~~~l~~~~tv~e~ 510 (554)
..+|++++|+||||||||||++.|+|+++|.+|+|.+.+.++. +.|++|.. .+++..+|.++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~--~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSY--GADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCT--TCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccc--cCCHHHHHHHH
Confidence 3689999999999999999999999999999999998876541 23777763 57788899999
Q ss_pred HHhh
Q 008771 511 VAEA 514 (554)
Q Consensus 511 l~~~ 514 (554)
+..+
T Consensus 204 l~~~ 207 (328)
T 3e70_C 204 IQHA 207 (328)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-10 Score=120.97 Aligned_cols=149 Identities=15% Similarity=0.030 Sum_probs=82.8
Q ss_pred eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEE-cCCC----ceEEEEecccccc-cCccHHHHHHH
Q 008771 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK-AKSN----MKIAFLSQEFEVS-MSRTVREEFMS 184 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~-~~~~----~~i~~v~Q~~~~~-~~~tv~e~~~~ 184 (554)
.+|+++++.+++|++++|+||||||||||+++|+|. ..|.+.. .... ..++++||.+.++ .+.+....+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~~r 233 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESR 233 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999985 4677765 2111 1356666665321 11111100000
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhH
Q 008771 185 AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264 (554)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq 264 (554)
... . .........+.+ .....-.-.+...-...+ ..-+.....+.....+++|+
T Consensus 234 ~l~-----------------~-~~~~~~~~~l~~-------~ldG~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~~~~ 287 (377)
T 1svm_A 234 DLP-----------------S-GQGINNLDNLRD-------YLDGSVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVPKTL 287 (377)
T ss_dssp TCC-----------------C-CSHHHHHHTTHH-------HHHCSSCEEECCSSSCCE-EECCCCEEEEECSCCCCHHH
T ss_pred hcc-----------------c-cCcchHHHHHHH-------HhcCCCeEeeccCchhhH-HHhhcCcccChhHHhhcHHH
Confidence 000 0 000000000000 000000000000000000 12233334556677899999
Q ss_pred HHHHHHHHHHccCCCeEe-ecCCCC
Q 008771 265 QMRMSLGKILLQDPDLLL-LDEPTN 288 (554)
Q Consensus 265 rqRv~LAraL~~~p~lLl-LDEPt~ 288 (554)
++|++.+.+++..|++++ ||+|+.
T Consensus 288 ~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 288 QARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp HTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred HHHHhhhhccCCCCCeEEEEeCCHH
Confidence 999999888999999998 999998
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.57 E-value=5.4e-09 Score=99.03 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=36.6
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCC-----CCCceEEEE
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE-----KPRGGEVLL 483 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~-----~p~~G~i~~ 483 (554)
.|+++|++|.|+. .++++ |.+.+|++++|+|+||||||||++.|+|.. .|+.|.+..
T Consensus 3 ~l~~~~~~~~~~~-~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 3 NLNYQQTHFVMSA-PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp --------CEEEE-SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred chhhhhhhheeec-CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 4789999999963 56776 899999999999999999999999999998 788887643
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=5.2e-09 Score=110.07 Aligned_cols=83 Identities=23% Similarity=0.277 Sum_probs=52.7
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCE--EEEECCCCCcHHHHHHHHhCCCCCCceEEEE---CCc-eeeEEEEeccc
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEK--TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEH-NVLPNYFEQNQ 497 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~--iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~---~~~-~~~~~y~~Q~~ 497 (554)
.+++++ ++.|++.+ ++++||+|++|++ ++|+|+||||||||+++|+|+.- .|.... .+. .-.++|++|+.
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~~ 91 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQES 91 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC-
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeecC
Confidence 355666 78888766 9999999999999 99999999999999999999842 121110 011 11356788864
Q ss_pred ccCCCCCCCHHHHHH
Q 008771 498 AEALDLDKTVLETVA 512 (554)
Q Consensus 498 ~~~l~~~~tv~e~l~ 512 (554)
.+.+..||.|++.
T Consensus 92 --~l~~~ltv~D~~~ 104 (427)
T 2qag_B 92 --NVRLKLTIVSTVG 104 (427)
T ss_dssp ---CEEEEEEEEEEC
T ss_pred --ccccccchhhhhh
Confidence 2434556666553
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-09 Score=106.18 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=42.0
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~ 488 (554)
.|+++|+...|+. +|++.+ ++++|+||||||||||+++|+|++.|++|.|.++|.++
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 3778888654431 566666 89999999999999999999999999999988876443
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-07 Score=98.04 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=47.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCeEeec-CCCCCCCHHHHHHHHHHHcc-C-CCeEEEEe--cCHH
Q 008771 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLD-EPTNHLDLDTIEWLEGYLGK-Q-DVPMVIIS--HDRA 317 (554)
Q Consensus 254 ~~~~~~LSGGqrqRv~LAraL~~~p~lLlLD-EPt~~LD~~~~~~l~~~l~~-~-g~tvIiis--Hd~~ 317 (554)
+.++..+|+|++|++. +.+...++-++++| +|++++|......+.+.+.. . +.++|+|. ||+.
T Consensus 226 ~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 226 DRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp SSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred ccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 3456789999998876 55556677789999 99999998876555444432 2 78899998 8864
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.54 E-value=3.2e-08 Score=91.87 Aligned_cols=57 Identities=25% Similarity=0.207 Sum_probs=45.1
Q ss_pred EceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEE---------EcC-------CCceEEEEecccc
Q 008771 114 KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---------KAK-------SNMKIAFLSQEFE 171 (554)
Q Consensus 114 ~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~---------~~~-------~~~~i~~v~Q~~~ 171 (554)
++++|.+.+| +++|+|+||||||||+++|.+++.+..|... ..+ ....|.+++|++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 6789999999 9999999999999999999998887666421 111 2346888998863
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.51 E-value=7e-09 Score=101.98 Aligned_cols=54 Identities=17% Similarity=0.334 Sum_probs=36.4
Q ss_pred CceEEEeee-eEec-CCccceeceEEEEec---CCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 422 RSVVTIKNL-EFGY-EDRLLFNRANLTIER---GEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 422 ~~~l~~~~l-~~~y-~~~~~l~~vs~~i~~---Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
.++++++|+ ++.| ++..+++++||+|.+ |++|+|+|++||||||+.++|++.+.
T Consensus 15 ~~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 15 SALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357999999 9999 667899999999999 99999999999999999999988543
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.51 E-value=4.5e-08 Score=91.39 Aligned_cols=101 Identities=15% Similarity=0.212 Sum_probs=61.9
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee--------EEEEecccccCCCCCCCHHHHHHhhccc
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQNQAEALDLDKTVLETVAEAAED 517 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~--------~~y~~Q~~~~~l~~~~tv~e~l~~~~~~ 517 (554)
.|.+|++++|+||||||||||+++|+|. |..|.|.+++.++. .+|++|... ...+|.+++......
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHHHHH
Confidence 5789999999999999999999999998 77899988875431 234444321 235677776543210
Q ss_pred C---C-HHHHHHHHhhCCCChhhh--ccccCcCChhhhhccc
Q 008771 518 W---R-IDDIKGLLGRCNFKADML--DRKVSLLSGGEKIILL 553 (554)
Q Consensus 518 ~---~-~~~~~~~L~~~~l~~~~~--~~~~~~LSGGek~Rl~ 553 (554)
. . ...+..++..+++. ... +.++..+|+|++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~ls~~~~~~v~ 119 (191)
T 1zp6_A 79 YAKEGYFVILDGVVRPDWLP-AFTALARPLHYIVLRTTAAEA 119 (191)
T ss_dssp HHHTSCEEEECSCCCTTTTH-HHHTTCSCEEEEEEECCHHHH
T ss_pred HhccCCeEEEeccCcHHHHH-HHHhcCCCeEEEEecCCHHHH
Confidence 0 0 00001112222221 111 4466789999999875
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.50 E-value=5.1e-08 Score=92.03 Aligned_cols=32 Identities=19% Similarity=0.399 Sum_probs=26.8
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 444 s~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
||++.+|++++|+||||||||||+++|+|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 57889999999999999999999999999964
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-08 Score=96.50 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=31.6
Q ss_pred eEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC
Q 008771 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160 (554)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~ 160 (554)
.++.++|++++|+|+||||||||+++|++.+ |.+.+++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~ 62 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADA 62 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccc
Confidence 4667899999999999999999999999977 888887643
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=1.1e-07 Score=90.13 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=47.2
Q ss_pred CChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc-CCCeEEEEecCHHHH--HhhcceEEEeeC
Q 008771 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-QDVPMVIISHDRAFL--DQLCTKIVETEM 331 (554)
Q Consensus 260 LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~-~g~tvIiisHd~~~l--~~~~d~i~~l~~ 331 (554)
.+.|+.+|..++..+..+|+.+.++ ++.++|.....+.+.+.. .+.++|+.+|.+.+. ...||.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 3678999999999998888765444 345677777777766653 356788888987665 567999998864
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=9.4e-08 Score=100.73 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=41.2
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G 479 (554)
..|.++|+++.|+++.++++++|+| +|+|+||||||||+++|+|...|..|
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~ 60 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE 60 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred CcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC
Confidence 3588999999998888999999998 99999999999999999999875444
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=2.1e-09 Score=108.49 Aligned_cols=46 Identities=22% Similarity=0.205 Sum_probs=39.1
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee
Q 008771 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (554)
Q Consensus 441 ~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~ 488 (554)
++++|+ +|++++|+|+|||||||++..|++.+.+..|.|.+.+.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 345666 8999999999999999999999999998888887765443
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.42 E-value=2e-07 Score=96.07 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=31.4
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeE
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I 154 (554)
=|++|+++.|+||+|||||||+..+++...+..|.|
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 378999999999999999999999998877665654
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.9e-07 Score=106.20 Aligned_cols=72 Identities=14% Similarity=0.162 Sum_probs=55.0
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCeEeecCCCC-CCCHHHHHHHHHHHc---cCCCeEEE-EecCHHHHHhhcceE
Q 008771 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTN-HLDLDTIEWLEGYLG---KQDVPMVI-ISHDRAFLDQLCTKI 326 (554)
Q Consensus 255 ~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~-~LD~~~~~~l~~~l~---~~g~tvIi-isHd~~~l~~~~d~i 326 (554)
..+.-+|+|+.+|..+++.++.++++||+|||.. +||......+...+. ....+|++ +||+.+.+..+++..
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSC
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCC
Confidence 4456789999999999999999999999999997 999876544444332 22456666 399988887777643
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.3e-07 Score=90.64 Aligned_cols=64 Identities=27% Similarity=0.361 Sum_probs=43.2
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCC-------CceEEEECCcee----eEEEEecccccCCCCCCCHHHHHH
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-------RGGEVLLGEHNV----LPNYFEQNQAEALDLDKTVLETVA 512 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p-------~~G~i~~~~~~~----~~~y~~Q~~~~~l~~~~tv~e~l~ 512 (554)
-|++||+++|+||||||||||+++|+|...+ ..|.+++++... ..+++.|.. .++++ ++.+++.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~--~~~~~-~~~~~~~ 95 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNR--GLDPD-EVLKHIY 95 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT--TSCHH-HHHHTEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHc--CCCHH-HHhhcEE
Confidence 6899999999999999999999999996555 334666655432 122444442 23332 6666654
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.39 E-value=5.8e-08 Score=97.57 Aligned_cols=95 Identities=16% Similarity=0.013 Sum_probs=61.1
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEE-EEecccccCCCCCCCHHHHHHhhc-----------c
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN-YFEQNQAEALDLDKTVLETVAEAA-----------E 516 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~-y~~Q~~~~~l~~~~tv~e~l~~~~-----------~ 516 (554)
++.+|+|+|++|||||||+++|++++.+. | ...... ++.|+.. + ...++.+++.... +
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~~~~~~~iv~~D~f--~-~~~~~~~~l~~~~~~~~l~~~~g~p 99 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------GGEKSIGYASIDDF--Y-LTHEDQLKLNEQFKNNKLLQGRGLP 99 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------GGGSCEEEEEGGGG--B-CCHHHHHHHHHHTTTCGGGSSSCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------CCCceEEEeccccc--c-CChHHHHHHhccccccchhhhccCc
Confidence 57799999999999999999999998763 2 012223 4488742 2 4568888876542 1
Q ss_pred -cCCHHHHHHHHhhCCCCh-----h--hhccccCcCChhhhhccc
Q 008771 517 -DWRIDDIKGLLGRCNFKA-----D--MLDRKVSLLSGGEKIILL 553 (554)
Q Consensus 517 -~~~~~~~~~~L~~~~l~~-----~--~~~~~~~~LSGGek~Rl~ 553 (554)
......+...|..+.-.. . .+......+||||++|+.
T Consensus 100 ~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~ 144 (290)
T 1odf_A 100 GTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCP 144 (290)
T ss_dssp TSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECS
T ss_pred chhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccc
Confidence 122344555665553220 1 123445789999999975
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=98.38 E-value=9.7e-08 Score=95.19 Aligned_cols=98 Identities=15% Similarity=0.185 Sum_probs=62.1
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce----eeEEEEecccccCCCCCCCHHHHHHhhcccCCHH
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN----VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~----~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~ 521 (554)
.+.+|++++|+||||||||||++.|++... .|.+++ |.. -.+.|+..+.. . ..+...+..........
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~-g~~~~~~~~v~~~~~e~~--~---~~~~~r~~~~g~~~~~~ 97 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLL-EVGELPTGPVIYLPAEDP--P---TAIHHRLHALGAHLSAE 97 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTT-CCCCCCCCCEEEEESSSC--H---HHHHHHHHHHHTTSCHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcC-CCccCCCccEEEEECCCC--H---HHHHHHHHHHHhhcChh
Confidence 378999999999999999999999998654 354433 221 12456654321 1 11222222222223444
Q ss_pred HHHHHHhhCCCChhhhccccCcCChhhhhcc
Q 008771 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKIIL 552 (554)
Q Consensus 522 ~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl 552 (554)
....++..+.+.. ..++++..||+||.+++
T Consensus 98 ~~~~~~~~l~l~~-~~~~~~~~ls~g~~~~i 127 (279)
T 1nlf_A 98 ERQAVADGLLIQP-LIGSLPNIMAPEWFDGL 127 (279)
T ss_dssp HHHHHHHHEEECC-CTTSCCCTTSHHHHHHH
T ss_pred hhhhccCceEEee-cCCCCcccCCHHHHHHH
Confidence 5566677777643 45788999999998875
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.8e-07 Score=88.03 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=28.9
Q ss_pred HHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc
Q 008771 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (554)
Q Consensus 268 v~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 303 (554)
...|++|+.+|+++++| ||++|..+++.+.+.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNIL 163 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHH
Confidence 34588999999999999 99999998888777654
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.37 E-value=8.2e-08 Score=91.40 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=28.7
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCC
Q 008771 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (554)
Q Consensus 447 i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~ 477 (554)
..+|++|+|+||||||||||+++|+|++.|.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~ 49 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ 49 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 4689999999999999999999999999864
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=3.9e-08 Score=111.07 Aligned_cols=81 Identities=19% Similarity=0.209 Sum_probs=53.1
Q ss_pred eEEEeeeeEec---CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCceeeEEEEeccccc
Q 008771 424 VVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-PRGGEVLLGEHNVLPNYFEQNQAE 499 (554)
Q Consensus 424 ~l~~~~l~~~y---~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~-p~~G~i~~~~~~~~~~y~~Q~~~~ 499 (554)
.+++++..... ++..++++++|+ |++++|+||||||||||+|+|+|+.. +..|.+... ....++|++|
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa-~~~~i~~v~~---- 621 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA-EEAHLPLFDG---- 621 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS-SEEEECCCSE----
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeeh-hccceeeHHH----
Confidence 46777765444 345689999998 99999999999999999999999874 677765322 2223455554
Q ss_pred CCCCCCCHHHHHHh
Q 008771 500 ALDLDKTVLETVAE 513 (554)
Q Consensus 500 ~l~~~~tv~e~l~~ 513 (554)
++...++.|++..
T Consensus 622 -i~~~~~~~d~l~~ 634 (765)
T 1ewq_A 622 -IYTRIGASDDLAG 634 (765)
T ss_dssp -EEEECCC------
T ss_pred -hhccCCHHHHHHh
Confidence 2233466666543
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=98.36 E-value=2.2e-08 Score=114.82 Aligned_cols=50 Identities=28% Similarity=0.367 Sum_probs=41.3
Q ss_pred eEEEeeeeEec-------CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC
Q 008771 424 VVTIKNLEFGY-------EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 424 ~l~~~~l~~~y-------~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
.+.+++..... ++..++++++|++.+|++++|+||||||||||||+|+++
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 56676665433 245689999999999999999999999999999999753
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.4e-08 Score=96.22 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=44.1
Q ss_pred EeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeE--EEcC
Q 008771 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--IKAK 158 (554)
Q Consensus 101 ~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I--~~~~ 158 (554)
+|+++.++...+.+..++..++|++++|+|+||||||||+++|++.+. ..|.+ ++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~ 61 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDG 61 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecC
Confidence 467777777778888888889999999999999999999999999987 67876 6554
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.7e-06 Score=88.00 Aligned_cols=47 Identities=23% Similarity=0.267 Sum_probs=37.4
Q ss_pred cCCCeEeecCCCCCCCHHHHHHHHHHHcc------CCCeEEEEecCHHHHHhhc
Q 008771 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK------QDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~------~g~tvIiisHd~~~l~~~~ 323 (554)
.+|.+|++||+... |......|..++.+ .+.++|++||+..+...+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 45889999999876 99888888887743 4779999999987665544
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=4.1e-08 Score=101.98 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=40.2
Q ss_pred eeceEEEEec--CCEEEEECCCCCcHHHHHHHHhCCCCCCc----eEEEE
Q 008771 440 FNRANLTIER--GEKTAIIGPNGCGKSTLLKLIMGLEKPRG----GEVLL 483 (554)
Q Consensus 440 l~~vs~~i~~--Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~----G~i~~ 483 (554)
...|+++|.+ |++++|+|+||||||||+++|+|++.|.+ |.+.+
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i 207 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFV 207 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHH
Confidence 4568999999 99999999999999999999999999998 77654
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.3e-07 Score=107.93 Aligned_cols=55 Identities=25% Similarity=0.334 Sum_probs=44.4
Q ss_pred CCceEEEee-----eeEec-CCccceeceEEEEec-------CCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008771 421 GRSVVTIKN-----LEFGY-EDRLLFNRANLTIER-------GEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (554)
Q Consensus 421 ~~~~l~~~~-----l~~~y-~~~~~l~~vs~~i~~-------Ge~iaIvG~NGsGKSTLlk~L~G~~~p 476 (554)
....|++++ +++.| ++..++++++|++.+ |++++|+||||||||||||+| |++.+
T Consensus 747 ~~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~ 814 (1022)
T 2o8b_B 747 TPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV 814 (1022)
T ss_dssp SCCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH
T ss_pred CCceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH
Confidence 345799999 99888 666799999999987 999999999999999999999 98764
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.7e-07 Score=98.81 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHccCCCeEeecCCCC----------CCCHHHHHHHHHHHc-------cCCCeEEEEecCHHHHH
Q 008771 262 SGWQMRMSLGKILLQDPDLLLLDEPTN----------HLDLDTIEWLEGYLG-------KQDVPMVIISHDRAFLD 320 (554)
Q Consensus 262 GGqrqRv~LAraL~~~p~lLlLDEPt~----------~LD~~~~~~l~~~l~-------~~g~tvIiisHd~~~l~ 320 (554)
|++++|..+++|....|.+|++||+.+ +.|......+.++|. ..+..||.+||+++.++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 678889999999999999999999943 566554444444432 24678899999986654
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.3e-07 Score=89.37 Aligned_cols=29 Identities=34% Similarity=0.549 Sum_probs=24.0
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 447 i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
+.+|++++|+||||||||||+++|+|+++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35799999999999999999999999875
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=7.2e-08 Score=96.91 Aligned_cols=45 Identities=24% Similarity=0.178 Sum_probs=41.0
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEE
Q 008771 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVL 482 (554)
Q Consensus 438 ~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G-~i~ 482 (554)
..|+++++.|.+|++++|+|+||||||||++.|+|...|.+| .|.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~ 68 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG 68 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE
Confidence 468999999999999999999999999999999999998877 553
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.3e-07 Score=86.42 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=30.1
Q ss_pred EEEECCCEEEEECCCCccHHHHHHHHHCCCCCCce
Q 008771 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (554)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G 152 (554)
++|.+|++++|+|+||||||||+++|++.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977666
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.8e-08 Score=94.08 Aligned_cols=59 Identities=25% Similarity=0.312 Sum_probs=42.8
Q ss_pred eeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE--EECCcee
Q 008771 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV--LLGEHNV 488 (554)
Q Consensus 429 ~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i--~~~~~~~ 488 (554)
|++..+++....+.+++...+|++|+|+|+||||||||+++|++.+. ..|.+ ++++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 4 NIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp ------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 45555555445566777789999999999999999999999999887 66776 6665443
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.27 E-value=7.9e-07 Score=92.18 Aligned_cols=61 Identities=16% Similarity=0.173 Sum_probs=40.4
Q ss_pred HHHHhhhcCCCcc---ccCCCCCCCChhHHHHHHHH----HHH-ccCCCeEeecCCCCCCCHHHHHHHHHHHc
Q 008771 239 VSKLMPELGFTAD---DGDRLVASFSSGWQMRMSLG----KIL-LQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (554)
Q Consensus 239 ~~~~l~~lgl~~~---~~~~~~~~LSGGqrqRv~LA----raL-~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 303 (554)
+.+++..+++... ....++..+|+|+++++.++ +.+ ..+|++ +|+|++|..+.+.|.+.+.
T Consensus 281 ~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~ 349 (364)
T 2qtf_A 281 SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIY 349 (364)
T ss_dssp HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHH
Confidence 4556666654321 11233566888888888877 666 444454 8999999988888777654
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.2e-07 Score=93.34 Aligned_cols=42 Identities=26% Similarity=0.269 Sum_probs=34.5
Q ss_pred eeEEceeEEEECCCEEEEECCCCccHHHHHHHHH---CCCCCCceeEE
Q 008771 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA---GQEEPDSGNVI 155 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~---G~~~p~~G~I~ 155 (554)
.++++.+ .+|++++|+|+|||||||++++|+ |+..|++|.|+
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 3455544 789999999999999999999999 99999999987
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.23 E-value=5.5e-07 Score=84.91 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=29.9
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008771 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (554)
Q Consensus 445 ~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G 479 (554)
++|.+|++++|+||||||||||+++|++.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 36789999999999999999999999999977655
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=5.2e-06 Score=85.79 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=33.6
Q ss_pred eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHC--CCCCCceeEE
Q 008771 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--QEEPDSGNVI 155 (554)
Q Consensus 110 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G--~~~p~~G~I~ 155 (554)
..+|++++++++ .++|||++|||||||++.|+| ++++.+|.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 357899999997 999999999999999999999 5677777664
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.3e-07 Score=98.42 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=45.2
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCcee------eEEEEecc
Q 008771 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNV------LPNYFEQN 496 (554)
Q Consensus 439 ~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~-~G~i~~~~~~~------~~~y~~Q~ 496 (554)
+|++++ +.+|+.++|+||||||||||+++|+|+++|. +|.|.+.+.++ ..+|++|.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~ 189 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR 189 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee
Confidence 566654 7899999999999999999999999999997 89986554433 23578883
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.6e-06 Score=88.66 Aligned_cols=54 Identities=9% Similarity=0.101 Sum_probs=41.0
Q ss_pred CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHH-HHccC-CCeEEEEec
Q 008771 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG-YLGKQ-DVPMVIISH 314 (554)
Q Consensus 259 ~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~~-g~tvIiisH 314 (554)
.||.++.+|+..|...+.+++++|.|+|... +..+..... +.+++ +..+|||.|
T Consensus 109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 6999999999999999999999999998654 444433333 33455 678888764
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=4.6e-06 Score=89.09 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 008771 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (554)
Q Consensus 263 GqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l 319 (554)
.+.+....+...+.+++++|+......-......++.+++++.++.+|++-+..+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 477777888888889998888776654333445678888888899999998877654
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.4e-05 Score=96.38 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=27.3
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCC
Q 008771 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (554)
Q Consensus 447 i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~ 477 (554)
+.+|+.+.|.|++|+|||||+..++......
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~ 759 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 759 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHc
Confidence 8999999999999999999999997755433
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.5e-06 Score=100.06 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=47.8
Q ss_pred CceEEEeeeeEec-----CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHH--------hCCCCCCceE
Q 008771 422 RSVVTIKNLEFGY-----EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--------MGLEKPRGGE 480 (554)
Q Consensus 422 ~~~l~~~~l~~~y-----~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L--------~G~~~p~~G~ 480 (554)
...+.+++....+ ++..++++++|++.+|++++|+||||||||||||+| .|...|..+.
T Consensus 629 ~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~ 700 (934)
T 3thx_A 629 QGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA 700 (934)
T ss_dssp SCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEE
T ss_pred CcceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccc
Confidence 4457777766544 234688999999999999999999999999999999 8888776553
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.14 E-value=7.3e-07 Score=84.18 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=32.0
Q ss_pred eEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee
Q 008771 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (554)
Q Consensus 443 vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~ 488 (554)
..+...+|++++|+|+||||||||+++|+|.+ |.+.+++.++
T Consensus 22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~ 63 (200)
T 4eun_A 22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF 63 (200)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence 34566789999999999999999999999976 7788876544
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.4e-07 Score=91.03 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=33.5
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHh---CCCCCCceEEE
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIM---GLEKPRGGEVL 482 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~---G~~~p~~G~i~ 482 (554)
.+|++|+|+|||||||||++++|+ |+..|++|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 789999999999999999999999 99999999887
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.12 E-value=1e-06 Score=83.12 Aligned_cols=38 Identities=24% Similarity=0.199 Sum_probs=24.8
Q ss_pred eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 110 ~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
..+++||||++.+|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45899999999999999999999999999999999765
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.12 E-value=7e-08 Score=100.34 Aligned_cols=43 Identities=26% Similarity=0.331 Sum_probs=38.1
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008771 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (554)
Q Consensus 438 ~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~ 483 (554)
.+++++++.+.+|++++|+||||||||||+++|+|. .+|.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~ 199 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALN 199 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEEC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEE
Confidence 478899999999999999999999999999999985 3566655
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=3.8e-07 Score=94.20 Aligned_cols=67 Identities=19% Similarity=0.158 Sum_probs=47.2
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCceee------EEEEecccccCCCCCCCHHHHHHhh
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNVL------PNYFEQNQAEALDLDKTVLETVAEA 514 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~-~G~i~~~~~~~~------~~y~~Q~~~~~l~~~~tv~e~l~~~ 514 (554)
.+.+|+.++|+||||||||||+++|+|+++|. +|.|...+.++. .+++.|.+. .....+..+.|+.+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~--~~~~~~~~~~La~a 192 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREV--HRDTLGFSEALRSA 192 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEB--TTTBSCHHHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeee--ccccCCHHHHHHHH
Confidence 67889999999999999999999999999987 566655433331 235666532 11235666666544
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=8.7e-07 Score=82.25 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=29.9
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCCCC-CceeEEE
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIK 156 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-~~G~I~~ 156 (554)
+|++++|+||||||||||+++|++.+++ ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 6899999999999999999999998864 4565543
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.8e-06 Score=89.00 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=31.3
Q ss_pred CCCeEeecCCCCCCC---HHHHHHHHHHH---ccCCCeEEEEecCHHHHHh
Q 008771 277 DPDLLLLDEPTNHLD---LDTIEWLEGYL---GKQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 277 ~p~lLlLDEPt~~LD---~~~~~~l~~~l---~~~g~tvIiisHd~~~l~~ 321 (554)
.|.+|++||+....+ ......|.+.+ ...+.++|++||+..+...
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 388999999988763 44555566666 3457899999998865443
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.08 E-value=6.9e-06 Score=84.36 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=25.6
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
-|++|+++.|.|++|||||||+..|+..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988875
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.06 E-value=7e-07 Score=90.90 Aligned_cols=46 Identities=30% Similarity=0.294 Sum_probs=41.5
Q ss_pred EEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcC
Q 008771 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (554)
Q Consensus 113 l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~ 158 (554)
+++++|++.+|++++|+|+||+||||++..|++.+.+..|+|.+.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4788999999999999999999999999999999999889988643
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1e-06 Score=85.99 Aligned_cols=63 Identities=22% Similarity=0.382 Sum_probs=47.1
Q ss_pred cCCEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEECCcee------eEEEEecccccCCCCCCCHHHHHHh
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIM---GLEKPRGGEVLLGEHNV------LPNYFEQNQAEALDLDKTVLETVAE 513 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~---G~~~p~~G~i~~~~~~~------~~~y~~Q~~~~~l~~~~tv~e~l~~ 513 (554)
++++++|+||||||||||+++|+ |+..|+.|.|.+.+.+. .+.++.|+. .+.++.++.+++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKS--LLVPDHVITRLMMS 97 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTT--CCCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcC--CCCCHHHHHHHHHH
Confidence 47999999999999999999999 99999999887654211 112334542 35567788888764
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.06 E-value=1.2e-06 Score=81.76 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=30.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008771 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (554)
Q Consensus 450 Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~ 487 (554)
|++++|+||||||||||+++|++ |.+|.+.+++.+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~ 36 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDI 36 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccc
Confidence 68999999999999999999997 667888887644
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.4e-06 Score=97.02 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=40.7
Q ss_pred eEEEeeeeEec-----CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 424 VVTIKNLEFGY-----EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 424 ~l~~~~l~~~y-----~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
.+.+++..-.. ++..++++++|+ .+|++++|+||||||||||||+|+|+.
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 46666654322 345689999999 999999999999999999999999864
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=98.04 E-value=5.2e-07 Score=86.42 Aligned_cols=46 Identities=22% Similarity=0.279 Sum_probs=38.9
Q ss_pred cceeceEE-EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008771 438 LLFNRANL-TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (554)
Q Consensus 438 ~~l~~vs~-~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~ 483 (554)
..|+++.+ .|.+|++++|+||||||||||++.|++...+.+|.+.+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~ 56 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIY 56 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 35677766 79999999999999999999999999988777666644
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.4e-06 Score=80.80 Aligned_cols=34 Identities=9% Similarity=0.239 Sum_probs=28.8
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEE
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKP-RGGEV 481 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p-~~G~i 481 (554)
.+|++++|+||||||||||+++|++.+++ ..|.|
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i 37 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPI 37 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEee
Confidence 36899999999999999999999998864 44444
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.1e-07 Score=93.26 Aligned_cols=57 Identities=28% Similarity=0.374 Sum_probs=47.5
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcC
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~ 158 (554)
.+++++.+.|++..+++++++++++| ++|+||||||||||+++|++... .|.|.+++
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~ 82 (254)
T 1ixz_A 26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 82 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeH
Confidence 35567777776667899999999999 99999999999999999999875 66666553
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.1e-06 Score=80.83 Aligned_cols=37 Identities=22% Similarity=0.104 Sum_probs=24.7
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 438 ~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
..++++||++.+|.+|+|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4789999999999999999999999999999999755
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.4e-05 Score=81.35 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=25.5
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
-|++|+++.|.|++|+|||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4789999999999999999999988764
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.6e-06 Score=96.90 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=36.3
Q ss_pred HHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 008771 271 GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (554)
Q Consensus 271 AraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l 319 (554)
..+-..+.-++++| |+++++..+..++.. +...+.++|++.|.++..
T Consensus 93 ~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~-~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 93 GALEAADAALVAVS-AEAGVQVGTERAWTV-AERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHCSEEEEEEE-TTTCSCHHHHHHHHH-HHHTTCCEEEEEECGGGC
T ss_pred HHHhhcCcEEEEEc-CCcccchhHHHHHHH-HHHccCCEEEEecCCchh
Confidence 33445688899999 999999998866544 445688999999998754
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.3e-07 Score=96.04 Aligned_cols=62 Identities=19% Similarity=0.293 Sum_probs=46.9
Q ss_pred eEEEEeCCeeeEEceeEEEECCC------EEEEECCCCccHHHHHHHHHCCCC--CCceeEEEcCCCceEEEEeccccc
Q 008771 102 NISKSYKGVTVLKDVTWEVKKGE------KVGLVGVNGAGKTTQLRIIAGQEE--PDSGNVIKAKSNMKIAFLSQEFEV 172 (554)
Q Consensus 102 ~ls~~y~~~~~l~~isl~i~~Ge------~~~lvG~NGsGKSTLlk~i~G~~~--p~~G~I~~~~~~~~i~~v~Q~~~~ 172 (554)
.+++.|++...|++++..|..+. ++||+|+||||||||+++|++++. |+.|. +++++++...
T Consensus 65 ll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~---------v~~i~~D~f~ 134 (321)
T 3tqc_A 65 LLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN---------VEVITTDGFL 134 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC---------EEEEEGGGGB
T ss_pred HHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe---------EEEEeecccc
Confidence 34445666677777777777776 999999999999999999999987 44443 5566766543
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=2.2e-07 Score=91.02 Aligned_cols=58 Identities=19% Similarity=0.315 Sum_probs=47.1
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~ 486 (554)
.+++++.+.|....++++++|++.+| ++|+||||||||||+++|++... .|.+.+.+.
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~ 83 (254)
T 1ixz_A 26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 83 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHH
Confidence 34566666666556889999999999 99999999999999999999875 567776654
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.96 E-value=2.6e-07 Score=91.98 Aligned_cols=58 Identities=19% Similarity=0.315 Sum_probs=47.8
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~ 486 (554)
.+++++.+.|....++++++|.+.+| ++|+||||||||||+++|++... .|.+.+.+.
T Consensus 50 ~~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~ 107 (278)
T 1iy2_A 50 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 107 (278)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHH
Confidence 34566666676667889999999999 99999999999999999999876 677777654
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=4.4e-06 Score=87.90 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=32.6
Q ss_pred eeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC
Q 008771 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 440 l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
-++++|+++.|+.|+|+|+||||||||+++|+|.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 4789999999999999999999999999999998
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=7e-07 Score=82.10 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=29.7
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~ 159 (554)
.+|++++|+|+||||||||+++|++.+ |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCc
Confidence 468999999999999999999999865 66666653
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=2.9e-06 Score=81.95 Aligned_cols=39 Identities=23% Similarity=0.133 Sum_probs=32.8
Q ss_pred eEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCC
Q 008771 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159 (554)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~ 159 (554)
+.+.++|++++|+|+||||||||+++|+|. .|+|.+.+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~ 52 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTE 52 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECC
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEec
Confidence 335578999999999999999999999997 677776543
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=7.9e-07 Score=82.27 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=32.4
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008771 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (554)
Q Consensus 444 s~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G 479 (554)
+|.+.+|+.++|+||||||||||+++|++.+.|..|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 466778999999999999999999999999887666
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.91 E-value=4.6e-06 Score=88.38 Aligned_cols=48 Identities=29% Similarity=0.464 Sum_probs=37.5
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~ 478 (554)
|+++|+ ..|++. . ++++..|++++|+||||||||||+++|+++..|.+
T Consensus 7 l~~~~~-~~~~~~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 7 LELSNF-KSYRGV---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EEEESC-SSCCSE---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EEEeCE-EEECCc---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 567777 567542 1 35567899999999999999999999999888765
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.90 E-value=8.3e-06 Score=78.64 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=34.3
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhC--CCCC-----CceEEEECCc
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMG--LEKP-----RGGEVLLGEH 486 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G--~~~p-----~~G~i~~~~~ 486 (554)
-|.+|++++|+||||||||||++.|++ +.+| ..|.+++++.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 488999999999999999999999999 5655 4566766543
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.90 E-value=1.7e-06 Score=81.72 Aligned_cols=39 Identities=21% Similarity=0.118 Sum_probs=33.9
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008771 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (554)
Q Consensus 447 i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~ 485 (554)
..+|++++|+|+||||||||+++|++.+.+..|.|.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 567899999999999999999999999988778776543
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=3.1e-06 Score=81.76 Aligned_cols=37 Identities=22% Similarity=0.175 Sum_probs=31.6
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~ 486 (554)
...+|++|+|.|+||||||||+++|+|. .|.|.+.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~ 52 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTE 52 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEec
Confidence 4578999999999999999999999998 566766544
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.89 E-value=2e-06 Score=81.31 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=33.7
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEc
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~ 157 (554)
..+|++++|+|+||||||||+++|++.+++..|.|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 46789999999999999999999999998888877654
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.1e-05 Score=75.22 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=32.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCceee
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEKP-----------RGGEVLLGEHNVL 489 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~p-----------~~G~i~~~~~~~~ 489 (554)
+++|+|+||||||||++.|+|...+ ..|.|.++|.++.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~ 79 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 79 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEE
Confidence 6899999999999999999998775 5788888876554
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.89 E-value=5e-07 Score=91.82 Aligned_cols=51 Identities=24% Similarity=0.262 Sum_probs=37.1
Q ss_pred eEecCCccceeceEEEEecCC------EEEEECCCCCcHHHHHHHHhCCCC--CCceEE
Q 008771 431 EFGYEDRLLFNRANLTIERGE------KTAIIGPNGCGKSTLLKLIMGLEK--PRGGEV 481 (554)
Q Consensus 431 ~~~y~~~~~l~~vs~~i~~Ge------~iaIvG~NGsGKSTLlk~L~G~~~--p~~G~i 481 (554)
++.|++...+.+++..+..+. +|||+||||||||||+++|.+++. |.+|.+
T Consensus 67 ~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v 125 (321)
T 3tqc_A 67 SFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV 125 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred HHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence 334444445555666666655 899999999999999999999987 445543
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=2.7e-06 Score=86.50 Aligned_cols=38 Identities=32% Similarity=0.442 Sum_probs=33.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC--------CCCceEEEECCcee
Q 008771 451 EKTAIIGPNGCGKSTLLKLIMGLE--------KPRGGEVLLGEHNV 488 (554)
Q Consensus 451 e~iaIvG~NGsGKSTLlk~L~G~~--------~p~~G~i~~~~~~~ 488 (554)
++++|+|+||||||||+++|+|.. .|+.|+|.++|..+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l 50 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLI 50 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHH
Confidence 589999999999999999999997 78999998876543
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.87 E-value=5.8e-06 Score=78.56 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=27.5
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCCCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (554)
++|++++|+||||||||||+++|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999987
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.87 E-value=9.7e-06 Score=82.25 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=40.3
Q ss_pred CChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHH-HHHHHHccCCCe--EEEEecC
Q 008771 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE-WLEGYLGKQDVP--MVIISHD 315 (554)
Q Consensus 260 LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~-~l~~~l~~~g~t--vIiisHd 315 (554)
||.++.+|+..|...+.++++++.|+|... ..... .+..+.++.+.. +|||.|=
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS--VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB--HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC--HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 899999999999999999999999999744 44333 333344455667 8888763
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.84 E-value=3.7e-06 Score=75.73 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=31.8
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCCCce--EEEECCc
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGEH 486 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G--~i~~~~~ 486 (554)
+|+.++|+||||||||||+++|++...+ +| .+++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHH
Confidence 8999999999999999999999998877 46 5665543
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.83 E-value=9.1e-06 Score=85.61 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=44.9
Q ss_pred EEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEc
Q 008771 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (554)
Q Consensus 100 ~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~ 157 (554)
.+++++.|++.. ++++|+ +|++++++|+|||||||++..|++.+.+..|+|.+.
T Consensus 79 ~~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 79 YEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp HHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 346677776544 678888 899999999999999999999999999887777654
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.83 E-value=9.2e-06 Score=83.84 Aligned_cols=33 Identities=33% Similarity=0.474 Sum_probs=31.3
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHhC
Q 008771 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 439 ~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G 472 (554)
.+++++|++.+| +++|+||||||||||+++|++
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 578899999999 999999999999999999997
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.83 E-value=8.6e-06 Score=77.33 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=27.5
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p 476 (554)
.+|++++|+||||||||||+++|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999876
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.82 E-value=2.2e-06 Score=87.16 Aligned_cols=47 Identities=26% Similarity=0.337 Sum_probs=41.6
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008771 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (554)
Q Consensus 441 ~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~ 487 (554)
++++|++.+|++++|+|+||+||||++..|++.+.+..|.|.+.+.+
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 56788889999999999999999999999999999988888775443
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.81 E-value=4e-05 Score=80.87 Aligned_cols=35 Identities=31% Similarity=0.158 Sum_probs=29.9
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEE
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~ 156 (554)
++.+++++|+|||||||++..|++.+.+..++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999999999988776555543
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.81 E-value=6.3e-06 Score=77.72 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=26.8
Q ss_pred eEEEECCCEEEEECCCCccHHHHHHHHHCCCC
Q 008771 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
|+...+|++++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34445899999999999999999999999875
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=1e-05 Score=76.53 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=35.0
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccc
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~ 173 (554)
++++|.+++|+|++|||||||+++|++.++ .+.+++|+..++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-------------~~~~i~~D~~~~ 58 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-------------NCSVISQDDFFK 58 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-------------TEEEEEGGGGBC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-------------CcEEEeCCcccc
Confidence 467899999999999999999999999874 267788876554
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=6.8e-06 Score=75.38 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=30.3
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~ 488 (554)
.+|++++|+|+|||||||++++|++.+ |.+.+++..+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 468999999999999999999999865 5666665443
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.77 E-value=4.9e-05 Score=73.45 Aligned_cols=29 Identities=38% Similarity=0.534 Sum_probs=24.6
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCCcee
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~ 153 (554)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 57999999999999999999988776654
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.76 E-value=4.2e-06 Score=91.13 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=35.5
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCCCCCCce-eEE-EcC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-NVI-KAK 158 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G-~I~-~~~ 158 (554)
.+++|++++|+|+||||||||+++|+|.+.|++| +|. +++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 5779999999999999999999999999999886 674 554
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.76 E-value=3.2e-06 Score=85.43 Aligned_cols=44 Identities=25% Similarity=0.278 Sum_probs=37.8
Q ss_pred eEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008771 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (554)
Q Consensus 443 vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~ 486 (554)
++|...+|++++|+|+|||||||++..|++.+.+..|.|.+.+.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 34556789999999999999999999999999988888876543
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=97.76 E-value=1e-05 Score=83.29 Aligned_cols=66 Identities=27% Similarity=0.375 Sum_probs=47.0
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHHhCCC--CCCc----eE-EEECCcee----eEEEEecccccCCCCCCCHHHHHH
Q 008771 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRG----GE-VLLGEHNV----LPNYFEQNQAEALDLDKTVLETVA 512 (554)
Q Consensus 444 s~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~--~p~~----G~-i~~~~~~~----~~~y~~Q~~~~~l~~~~tv~e~l~ 512 (554)
.+.|++|++++|+||||||||||++.|++.. +|++ |. |++++... ..++++|+. .++++ ++.+|+.
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~--~~~~~-~v~~ni~ 201 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNR--GLDPD-EVLKHIY 201 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTT--TCCHH-HHGGGEE
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHc--CCCHH-HHhhCEE
Confidence 5789999999999999999999999999988 6666 56 77776442 123455543 23322 5555543
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.75 E-value=3.7e-06 Score=91.56 Aligned_cols=43 Identities=30% Similarity=0.324 Sum_probs=37.2
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEE-ECCcee
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVL-LGEHNV 488 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G-~i~-~~~~~~ 488 (554)
.+.+|++++|+|+||||||||+++|+|.+.|.+| .+. +++.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999999887 564 776443
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.74 E-value=8.7e-06 Score=76.75 Aligned_cols=31 Identities=19% Similarity=0.434 Sum_probs=26.7
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 445 ~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
+...+|+.++|+||||||||||++.|++.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4455899999999999999999999998875
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.73 E-value=2.6e-07 Score=95.06 Aligned_cols=59 Identities=19% Similarity=0.158 Sum_probs=48.8
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEE
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~ 156 (554)
++.+++.+.|+...+++++++.+.+|.+++|+|+||+|||||++.|++.+.+..|+|.+
T Consensus 31 ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred hhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 34455555666667889999999999999999999999999999999998877666543
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.72 E-value=1.7e-05 Score=82.75 Aligned_cols=40 Identities=28% Similarity=0.369 Sum_probs=35.9
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhC------------CCCCCceEEEECC
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMG------------LEKPRGGEVLLGE 485 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G------------~~~p~~G~i~~~~ 485 (554)
++.+|++++|+|+||+|||||+++|+| ...|..|.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 456899999999999999999999999 5678999998876
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.71 E-value=1.2e-05 Score=73.49 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=25.4
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p 476 (554)
..|++|+|+|+||||||||+++|++.+.+
T Consensus 2 ~~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp -CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35789999999999999999999997654
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=2.8e-05 Score=72.72 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=30.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC-----CC------ceEEEECCceee
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK-----PR------GGEVLLGEHNVL 489 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~-----p~------~G~i~~~~~~~~ 489 (554)
+++|+|+||||||||++.|+|... |+ .|.|.++|..+.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~ 55 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 55 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEE
Confidence 689999999999999999999753 32 567888776543
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.67 E-value=3.7e-06 Score=84.80 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=39.6
Q ss_pred CChhHHHHHHHHHHHc--cCCCeEeecCCCCCCCHHH-HHHHHHH---H-ccCCC--eEEEEecCHHHHHhhcceEE
Q 008771 260 FSSGWQMRMSLGKILL--QDPDLLLLDEPTNHLDLDT-IEWLEGY---L-GKQDV--PMVIISHDRAFLDQLCTKIV 327 (554)
Q Consensus 260 LSGGqrqRv~LAraL~--~~p~lLlLDEPt~~LD~~~-~~~l~~~---l-~~~g~--tvIiisHd~~~l~~~~d~i~ 327 (554)
+|+|++ .+++.+. ..|.++++ |.+|... ...+.+. + ...+. .+.+++|+-.-+..++|.|.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 898886 4566665 78999998 8888754 3333332 2 33443 56666777777777777665
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.63 E-value=1.7e-05 Score=72.39 Aligned_cols=28 Identities=39% Similarity=0.372 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCCCC
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (554)
.|++++|+|+||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999997753
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=2.5e-05 Score=80.87 Aligned_cols=32 Identities=34% Similarity=0.635 Sum_probs=29.2
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008771 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 439 ~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~ 471 (554)
.++++++++..| .++|+||||||||||+.+|+
T Consensus 13 ~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 13 GLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp TEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 367789999999 88999999999999999998
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.61 E-value=6.7e-06 Score=84.72 Aligned_cols=52 Identities=23% Similarity=0.262 Sum_probs=47.0
Q ss_pred ccEEEEeEEEEeCC-eeeEE--------------ceeEEEECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 96 SGVKLENISKSYKG-VTVLK--------------DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 96 ~~i~~~~ls~~y~~-~~~l~--------------~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
..+.|+|+++.|+. +..|+ |+++.|.+|++++|+|++|+|||||++.|++.+
T Consensus 132 ~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 132 NKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34889999999975 56888 999999999999999999999999999999865
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00019 Score=71.54 Aligned_cols=57 Identities=9% Similarity=0.067 Sum_probs=38.3
Q ss_pred ChhHHHHHHHHHHHccCCCeEeecCCCCCCCH----------HHHHHHHHHHcc-------CCCeEEEEecCHH
Q 008771 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL----------DTIEWLEGYLGK-------QDVPMVIISHDRA 317 (554)
Q Consensus 261 SGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~----------~~~~~l~~~l~~-------~g~tvIiisHd~~ 317 (554)
+++++.+..++.+...+|.+|++||+.+-++. .....|...+.. .+..||.+|++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 46778888888888899999999999877653 222334333322 2345777788753
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00068 Score=61.08 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=22.0
Q ss_pred EEEEECCCCccHHHHHHHHHCCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
+++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999654
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.57 E-value=1.1e-05 Score=83.24 Aligned_cols=51 Identities=27% Similarity=0.341 Sum_probs=45.2
Q ss_pred eEEEeeeeEecCC-cccee--------------ceEEEEecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 424 VVTIKNLEFGYED-RLLFN--------------RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 424 ~l~~~~l~~~y~~-~~~l~--------------~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
-+.++|+++.|+. +..++ |+.+.|.+|++++|+|++|||||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3678999999975 45777 899999999999999999999999999998864
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00032 Score=72.25 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=25.1
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+++|+++.|.|++|+|||||+..++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998877543
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.56 E-value=1.8e-05 Score=87.53 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=47.9
Q ss_pred eeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCc-eEEEECC
Q 008771 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-GEVLLGE 485 (554)
Q Consensus 429 ~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~-G~i~~~~ 485 (554)
+++--|+...+++.+++.+..|+.++|+||||||||||+++|+++..+.. |.+.+.+
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~ 96 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFP 96 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEEC
T ss_pred ccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeC
Confidence 34444566678899999999999999999999999999999999999887 6665543
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.55 E-value=1.2e-06 Score=90.13 Aligned_cols=51 Identities=22% Similarity=0.168 Sum_probs=41.3
Q ss_pred ecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008771 433 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (554)
Q Consensus 433 ~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~ 483 (554)
.|+...+++++++.+.+|.+++|+|+||+|||||++.|++.+.+..|.+.+
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 39 QALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred hhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 343345677888888999999999999999999999999988766665543
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=3.9e-05 Score=68.96 Aligned_cols=28 Identities=36% Similarity=0.510 Sum_probs=23.5
Q ss_pred eeEEEECCCEEEEECCCCccHHHHHHHHH
Q 008771 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (554)
Q Consensus 116 isl~i~~Ge~~~lvG~NGsGKSTLlk~i~ 144 (554)
..+.+.+| +.+|+|||||||||++.+|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 44555555 99999999999999999987
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=1.3e-05 Score=76.61 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=28.4
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCC---CCCceeEEE
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQE---EPDSGNVIK 156 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~---~p~~G~I~~ 156 (554)
+.+++|+|++||||||++++|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999866 556666554
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=5.6e-05 Score=67.86 Aligned_cols=30 Identities=40% Similarity=0.663 Sum_probs=23.8
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008771 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 441 ~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~ 471 (554)
.+.++++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3344555444 89999999999999999986
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=4.5e-05 Score=72.23 Aligned_cols=33 Identities=24% Similarity=0.199 Sum_probs=28.4
Q ss_pred eeceEE-EEecCCEEEEECCCCCcHHHHHHHHhC
Q 008771 440 FNRANL-TIERGEKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 440 l~~vs~-~i~~Ge~iaIvG~NGsGKSTLlk~L~G 472 (554)
|+.+.. -|++|++++|+|+||||||||++.|++
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 444433 588999999999999999999999999
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=1.5e-05 Score=76.27 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=29.5
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC---CCCceEEEE
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLE---KPRGGEVLL 483 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~---~p~~G~i~~ 483 (554)
.+.+|+|+|++||||||++++|++.+ .++.|.+..
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 35789999999999999999998765 667777655
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=2.6e-05 Score=78.33 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=29.7
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G 479 (554)
.+|++++|+|+|||||||++..|++.+.+.+|
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G 134 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH 134 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999999988777
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.44 E-value=2.5e-06 Score=93.14 Aligned_cols=59 Identities=22% Similarity=0.228 Sum_probs=48.8
Q ss_pred EEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcC
Q 008771 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (554)
Q Consensus 99 ~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~ 158 (554)
-++++.+.|....++.++++++ +|+.++|+||||+|||||+++|++...+..|.|.+.+
T Consensus 85 G~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 85 GLEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp SCHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred cHHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 3456666666566788888888 8999999999999999999999999988777776543
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=4.4e-05 Score=72.03 Aligned_cols=30 Identities=23% Similarity=0.127 Sum_probs=27.5
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
++.+|.+|+|+|++|||||||+++|++.+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999999999864
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=8.8e-05 Score=77.60 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=32.1
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHH--hCCCCCCce-----EEEECCc
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLI--MGLEKPRGG-----EVLLGEH 486 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L--~G~~~p~~G-----~i~~~~~ 486 (554)
-|.+|++++|+||||||||||++.| .++.++..| .+++++.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 5889999999999999999999944 577766444 5555543
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00027 Score=74.95 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=30.8
Q ss_pred cCCCeEeecCCCCCCCH-HHHHHHHHHH---ccCCCeEEEEecCH
Q 008771 276 QDPDLLLLDEPTNHLDL-DTIEWLEGYL---GKQDVPMVIISHDR 316 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~-~~~~~l~~~l---~~~g~tvIiisHd~ 316 (554)
.+|++|++||+..-.+. ...+.|...+ .+.+..+|++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887764 4555555554 45688999999983
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.41 E-value=4.9e-05 Score=73.37 Aligned_cols=43 Identities=21% Similarity=0.184 Sum_probs=30.8
Q ss_pred eEEceeEEEE---CCCEEEEECCCCccHHHHHHHHHCCCCCCceeEE
Q 008771 112 VLKDVTWEVK---KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155 (554)
Q Consensus 112 ~l~~isl~i~---~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~ 155 (554)
-|.++||++. +|.+++|.|++||||||+++.|+..+.+ .+.+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 3666677766 8999999999999999999999998877 55554
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=3.5e-05 Score=70.93 Aligned_cols=31 Identities=35% Similarity=0.370 Sum_probs=26.9
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCCCCCce
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G 152 (554)
.+|++++|+|++||||||++++|++.+.+ .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 46899999999999999999999998755 45
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=3.3e-05 Score=71.08 Aligned_cols=37 Identities=24% Similarity=0.215 Sum_probs=29.4
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCCCCce--EEEECC
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGE 485 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G--~i~~~~ 485 (554)
.+|++|+|+|++||||||++++|++.+.+ .| .+.+++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~ 41 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDG 41 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECC
Confidence 46899999999999999999999997755 45 444443
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=9.1e-05 Score=71.47 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.6
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G 145 (554)
..|+.++|+|++||||||++.++..
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 3689999999999999998887653
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=1.2e-05 Score=83.17 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=38.8
Q ss_pred CCccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeE
Q 008771 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I 154 (554)
....+.+.|++..|+.+.++++++|+| +|||++|+|||||++.|.|...+..|.+
T Consensus 14 ~~~~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~ 68 (361)
T 2qag_A 14 TPGYVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVI 68 (361)
T ss_dssp -------CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------
T ss_pred CCceEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 345688999999998888899999987 9999999999999999998766555543
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.36 E-value=7.5e-06 Score=89.37 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=46.4
Q ss_pred EeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008771 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (554)
Q Consensus 427 ~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~ 485 (554)
++++...|....++.++++++ +|+.++|+||||||||||+++|++...+..|.|.+++
T Consensus 86 ~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 86 LEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp CHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 344555554444667777777 8999999999999999999999999988888887655
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.34 E-value=2.4e-05 Score=82.34 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=43.0
Q ss_pred eeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008771 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (554)
Q Consensus 429 ~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~ 487 (554)
+++..|++.. ++++|+ +|++++|+|+|||||||++..|++.+.+..+.|.+.+.+
T Consensus 81 ~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 81 ALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp HHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 3445555432 567777 899999999999999999999999999988877665433
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.32 E-value=5.2e-05 Score=77.97 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=31.8
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEc
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~ 157 (554)
++.+++|+|++|||||||++.|+|.+.+..|+|.+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~ 108 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVL 108 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEE
Confidence 567999999999999999999999988888877654
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.28 E-value=8.2e-05 Score=71.76 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=30.3
Q ss_pred eeceEEEEe---cCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Q 008771 440 FNRANLTIE---RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482 (554)
Q Consensus 440 l~~vs~~i~---~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~ 482 (554)
+.++||.+. +|.+|+|.|++||||||+++.|+..+.+ .+.+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 344555554 8999999999999999999999998887 55553
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00018 Score=72.04 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=26.9
Q ss_pred CEEEEECCCCccHHHHHHHHHCCCCCCceeE
Q 008771 124 EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (554)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I 154 (554)
..+.|+||+|+|||||+++|++...+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5799999999999999999999887666644
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.24 E-value=8.2e-05 Score=80.62 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=30.5
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC
Q 008771 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 439 ~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
.+++++|++.+| +.+|+|+||||||||+.+|..+
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 467899999999 9999999999999999999544
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0012 Score=66.60 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=24.6
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G 145 (554)
-|++|+++.|.|++|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988775
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.20 E-value=2.8e-05 Score=83.64 Aligned_cols=59 Identities=19% Similarity=0.322 Sum_probs=45.8
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~ 487 (554)
.+++++...|....+++++++.+.+| +.|+||||||||||+++|++... .+.+.+.+.+
T Consensus 41 ~~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~ 99 (499)
T 2dhr_A 41 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSD 99 (499)
T ss_dssp HHHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGG
T ss_pred HHHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhH
Confidence 34455554555556788999999999 99999999999999999999875 4567666543
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00081 Score=71.31 Aligned_cols=130 Identities=15% Similarity=0.135 Sum_probs=78.5
Q ss_pred eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCccHHHHHHHhhHHHH
Q 008771 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEM 190 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~ 190 (554)
+-|+.+.--+++|+.+.|.|++|+|||||+.-|+.......| ..+.|+.=+ ++..+...
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g--------~~vl~~slE------~~~~~l~~------- 246 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG--------VGVGIYSLE------MPAAQLTL------- 246 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--------CCEEEEESS------SCHHHHHH-------
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--------CeEEEEECC------CCHHHHHH-------
Confidence 346665545889999999999999999999888765432222 234555422 22221110
Q ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHH
Q 008771 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270 (554)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~L 270 (554)
++.. ...|++..... -..||..+.+|+.-
T Consensus 247 -----------------------------------------------R~~~--~~~~i~~~~l~--~g~l~~~~~~~~~~ 275 (444)
T 2q6t_A 247 -----------------------------------------------RMMC--SEARIDMNRVR--LGQLTDRDFSRLVD 275 (444)
T ss_dssp -----------------------------------------------HHHH--HHTTCCTTTCC--GGGCCHHHHHHHHH
T ss_pred -----------------------------------------------HHHH--HHcCCCHHHHh--CCCCCHHHHHHHHH
Confidence 0000 11233211111 13689999999998
Q ss_pred HHHHccCCCeEeecCCCCCCCHHHH-HHHHHHHccCCCeEEEEec
Q 008771 271 GKILLQDPDLLLLDEPTNHLDLDTI-EWLEGYLGKQDVPMVIISH 314 (554)
Q Consensus 271 AraL~~~p~lLlLDEPt~~LD~~~~-~~l~~~l~~~g~tvIiisH 314 (554)
|...+.+.++++.|+|... .... ..+..+.++.+..+|||.+
T Consensus 276 a~~~l~~~~l~i~d~~~~s--~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 276 VASRLSEAPIYIDDTPDLT--LMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHHTSCEEEECCTTCB--HHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHhcCCEEEECCCCCC--HHHHHHHHHHHHHHcCCCEEEEcC
Confidence 8888888899999987544 4333 2334444456777887764
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00016 Score=68.34 Aligned_cols=29 Identities=38% Similarity=0.547 Sum_probs=23.9
Q ss_pred ceeEEEECCCEEEEECCCCccHHHHHHHHH
Q 008771 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (554)
Q Consensus 115 ~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~ 144 (554)
+.++.+.+| +.+|+|+|||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 345556564 99999999999999999886
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00022 Score=71.61 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=25.7
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.+.++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 34678889999999999999999999866
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.16 E-value=9e-05 Score=76.21 Aligned_cols=36 Identities=25% Similarity=0.406 Sum_probs=30.7
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEC
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~ 484 (554)
.+.+|+|+|++|||||||++.|+|.+.+.+|.|.+-
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~ 108 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVL 108 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEE
Confidence 467899999999999999999999887777766544
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=5.4e-05 Score=71.78 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=32.9
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCCCCCCce--eEEEc
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG--NVIKA 157 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G--~I~~~ 157 (554)
.+.+|.+++|+|++||||||+.+.|++.+.|..| .+.++
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 3567899999999999999999999998877777 55544
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00072 Score=76.46 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=24.5
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008771 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (554)
Q Consensus 447 i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p 476 (554)
+.+.--+.+.||.|||||.|.++|++....
T Consensus 508 ~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~ 537 (806)
T 3cf2_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CCCCSCCEEESSTTSSHHHHHHHHHHTTTC
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHhCC
Confidence 334445899999999999999999997653
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.13 E-value=1.6e-05 Score=80.05 Aligned_cols=54 Identities=26% Similarity=0.196 Sum_probs=43.0
Q ss_pred EEeEEEEeCCeeeEEc-eeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEE
Q 008771 100 LENISKSYKGVTVLKD-VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (554)
Q Consensus 100 ~~~ls~~y~~~~~l~~-isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~ 156 (554)
.+++.+.|++.. ++ ++|+++ |.+++++|+||+||||++..|++.+.+..|+|.+
T Consensus 77 ~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 77 YDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp HHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 456666676543 56 788876 9999999999999999999999999877666654
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00025 Score=65.68 Aligned_cols=34 Identities=35% Similarity=0.514 Sum_probs=20.9
Q ss_pred eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHC
Q 008771 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G 145 (554)
.+++++++..++. .++|+|++|+|||||++.+++
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 4788999998887 889999999999999999997
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00021 Score=67.12 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|+|+|+|||||||+.++|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999984
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=7e-05 Score=70.97 Aligned_cols=41 Identities=24% Similarity=0.148 Sum_probs=35.0
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce--EEEECC
Q 008771 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGE 485 (554)
Q Consensus 445 ~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G--~i~~~~ 485 (554)
+.+.+|..|+|+|++||||||+.+.|++.+.|..| .+.+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 34567999999999999999999999999887777 676654
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=6.8e-05 Score=70.19 Aligned_cols=42 Identities=33% Similarity=0.507 Sum_probs=31.3
Q ss_pred EEEeCCe-eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCC
Q 008771 104 SKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 104 s~~y~~~-~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+++|++. .+++++||..++. .++|+|++|+|||||++.+.+-
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3456553 6889999988877 6899999999999999999873
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.08 E-value=2.8e-05 Score=78.16 Aligned_cols=54 Identities=19% Similarity=0.078 Sum_probs=40.7
Q ss_pred eeeEecCCccceec-eEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008771 429 NLEFGYEDRLLFNR-ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (554)
Q Consensus 429 ~l~~~y~~~~~l~~-vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~ 485 (554)
++...|++.. .+ ++|+++ |.+++++|+||+||||++..|++.+.+..+.|.+.+
T Consensus 79 ~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 79 ELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp HHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3444454321 34 667766 999999999999999999999999988777766543
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0002 Score=67.18 Aligned_cols=21 Identities=33% Similarity=0.694 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00022 Score=66.04 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=26.6
Q ss_pred ceeEEEECCCEEEEECCCCccHHHHHHHHHCC
Q 008771 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 115 ~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
++|++..+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999865
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0003 Score=66.45 Aligned_cols=29 Identities=38% Similarity=0.590 Sum_probs=23.0
Q ss_pred ceEEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008771 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 442 ~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~ 471 (554)
+.++++.+ ...+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 34455444 389999999999999999884
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00017 Score=73.66 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=27.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCc
Q 008771 451 EKTAIIGPNGCGKSTLLKLIMG-LEKPRGGEVLLGEH 486 (554)
Q Consensus 451 e~iaIvG~NGsGKSTLlk~L~G-~~~p~~G~i~~~~~ 486 (554)
..+.|+||||+|||||+++|+| ++.|..|.+.+++.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 3489999999999999999999 78999998877654
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.03 E-value=8.6e-05 Score=79.84 Aligned_cols=56 Identities=29% Similarity=0.392 Sum_probs=43.3
Q ss_pred EEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcC
Q 008771 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (554)
Q Consensus 99 ~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~ 158 (554)
+++++...|.+..+++++++.+++| +.|+||||+|||||+++|++... .+.|.+++
T Consensus 42 ~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g 97 (499)
T 2dhr_A 42 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 97 (499)
T ss_dssp HHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEG
T ss_pred HHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEeh
Confidence 3444444454555788899999998 99999999999999999999874 56666654
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00025 Score=66.44 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
+++|+|+|||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00011 Score=76.01 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=37.2
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G 479 (554)
.+.+.+++..|+.+.+.++++|.| +|+|++|+|||||++.|+|......+
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 477888888887777888888877 99999999999999999987655443
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00035 Score=71.39 Aligned_cols=30 Identities=40% Similarity=0.663 Sum_probs=23.5
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008771 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 441 ~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~ 471 (554)
.+..++..+| +.+|+||||||||||+.+|+
T Consensus 15 ~~~~i~f~~~-~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cCeEEcCCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4445555444 88999999999999999873
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00034 Score=63.77 Aligned_cols=27 Identities=41% Similarity=0.613 Sum_probs=23.6
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
++|.+++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999875
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00031 Score=73.05 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=32.5
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCC-----------CCCCceeEEEcC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ-----------EEPDSGNVIKAK 158 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~-----------~~p~~G~I~~~~ 158 (554)
.+..|..++|||+||+|||||++.|+|. +.|..|.|.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 3457889999999999999999999998 567788887654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00055 Score=72.49 Aligned_cols=37 Identities=38% Similarity=0.601 Sum_probs=30.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEECCcee
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK------------PRGGEVLLGEHNV 488 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~------------p~~G~i~~~~~~~ 488 (554)
+++|+|+||||||||++.|+|... +.+|.+.++|..+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 799999999999999999999864 5678888877543
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00018 Score=66.47 Aligned_cols=35 Identities=34% Similarity=0.403 Sum_probs=29.7
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHCCCCCCceeE
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I 154 (554)
..+|.+++|+|++||||||+++.|+..+.+..|.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 34789999999999999999999999887655554
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00019 Score=66.40 Aligned_cols=36 Identities=31% Similarity=0.419 Sum_probs=30.5
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i 481 (554)
...+|.+|.|+|++||||||+.+.|++.+.+..+.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 345789999999999999999999999887665554
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00031 Score=67.54 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=29.6
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHH-hCCCCCCceEEEEC
Q 008771 444 NLTIERGEKTAIIGPNGCGKSTLLKLI-MGLEKPRGGEVLLG 484 (554)
Q Consensus 444 s~~i~~Ge~iaIvG~NGsGKSTLlk~L-~G~~~p~~G~i~~~ 484 (554)
..-+.+|+.++|+|+||||||||+..+ .+..+...+.+++.
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 446899999999999999999996555 44444433444443
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00031 Score=64.95 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=26.4
Q ss_pred ceEEEEecCCEEEEECCCCCcHHHHHHHHhCC
Q 008771 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 442 ~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
++|+...+|.+|+|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46788889999999999999999999999875
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00057 Score=72.39 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=28.8
Q ss_pred EEEEECCCCccHHHHHHHHHCCCC------------CCceeEEEcCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEE------------PDSGNVIKAKS 159 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~------------p~~G~I~~~~~ 159 (554)
.++|||+||+|||||++.|+|... |.+|.+.++|.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 899999999999999999999864 55677776653
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0002 Score=66.86 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=36.7
Q ss_pred ecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC--------CCCCceEEEECC
Q 008771 433 GYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--------EKPRGGEVLLGE 485 (554)
Q Consensus 433 ~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~--------~~p~~G~i~~~~ 485 (554)
.|++ ..++++++|..+.+ +|+|+|++|+|||||++.+.+- ..+..+.+.+++
T Consensus 8 ~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~ 68 (198)
T 1f6b_A 8 IYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG 68 (198)
T ss_dssp -----CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETT
T ss_pred HHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECC
Confidence 4444 24778888887776 7899999999999999999973 223456666665
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.001 Score=68.16 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=24.0
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3566899999999999999999997653
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00041 Score=63.21 Aligned_cols=27 Identities=41% Similarity=0.603 Sum_probs=23.6
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
.+|.+|+|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999865
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00031 Score=72.35 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=31.6
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhC--CCCCCceEEE
Q 008771 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG--LEKPRGGEVL 482 (554)
Q Consensus 438 ~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G--~~~p~~G~i~ 482 (554)
.+++++++++. .|+|+|++|||||||++.|+| .+++.+|.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 36778888887 999999999999999999999 5566666553
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00071 Score=62.61 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=21.1
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHhC
Q 008771 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 439 ~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G 472 (554)
+++++++..+.. +|+|+|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 567888888777 899999999999999999997
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0061 Score=62.80 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.3
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
-+++|+++.|.|+.|+|||||+..++-.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3689999999999999999999777643
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00055 Score=71.20 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=32.8
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECC
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGL-----------EKPRGGEVLLGE 485 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~-----------~~p~~G~i~~~~ 485 (554)
.+..|.+++|+|+||+|||||++.|+|. ..|..|.+.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 4467889999999999999999999998 667788887654
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00082 Score=69.38 Aligned_cols=39 Identities=21% Similarity=0.471 Sum_probs=30.4
Q ss_pred CCE-EEEECCCCCcHHHHHHHHhCCCC-----------CCceEEEECCcee
Q 008771 450 GEK-TAIIGPNGCGKSTLLKLIMGLEK-----------PRGGEVLLGEHNV 488 (554)
Q Consensus 450 Ge~-iaIvG~NGsGKSTLlk~L~G~~~-----------p~~G~i~~~~~~~ 488 (554)
|-. |+|+|++|||||||++.|+|... |..|.+.++|..+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 444 99999999999999999999876 5678888877543
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0005 Score=64.65 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=26.1
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCCCC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
...+|.+++|+|++|||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346799999999999999999999998764
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00058 Score=62.73 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCCc
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPDS 151 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~ 151 (554)
+++|+|++|+|||||++.++|...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~ 30 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDL 30 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccC
Confidence 689999999999999999999754433
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.003 Score=60.46 Aligned_cols=52 Identities=21% Similarity=0.183 Sum_probs=39.2
Q ss_pred CCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecC----------HHHHHhhcceEEEee
Q 008771 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHD----------RAFLDQLCTKIVETE 330 (554)
Q Consensus 277 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd----------~~~l~~~~d~i~~l~ 330 (554)
+|+++++||-- .|+....+.+.. |.+.+.+||++-|+ ...+..+||+|..|.
T Consensus 89 ~~dvViIDEaQ-~l~~~~ve~l~~-L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQ-FFDDRICEVANI-LAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGG-GSCTHHHHHHHH-HHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCc-cCcHHHHHHHHH-HHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 58999999996 488776555544 44459999999993 345556899999875
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00065 Score=62.19 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0006 Score=64.06 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=26.1
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
.+.+|..|+|+||+|||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999987664
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.76 E-value=6.8e-05 Score=76.59 Aligned_cols=48 Identities=23% Similarity=0.250 Sum_probs=41.2
Q ss_pred EeCCeeeEEceeEEEECCCE--EEEECCCCccHHHHHHHHHCCCCCCcee
Q 008771 106 SYKGVTVLKDVTWEVKKGEK--VGLVGVNGAGKTTQLRIIAGQEEPDSGN 153 (554)
Q Consensus 106 ~y~~~~~l~~isl~i~~Ge~--~~lvG~NGsGKSTLlk~i~G~~~p~~G~ 153 (554)
.|+...+++.++..|..|++ +.|.||+|+||||+++++++.+.+..+.
T Consensus 27 ~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp CCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred hcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 45666788899999999998 9999999999999999999987665543
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00037 Score=71.62 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=31.6
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i 481 (554)
-|.+|+++.|.||+|||||||+..++....+..|.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 478999999999999999999999998877766654
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0008 Score=61.77 Aligned_cols=24 Identities=46% Similarity=0.722 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
+|+|+|++|||||||++.++|...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~ 27 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKK 27 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999999643
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0011 Score=60.58 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|+|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0018 Score=65.40 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.4
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCCCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (554)
+..+.|.||+|+|||||++.|++...+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 457899999999999999999987643
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0007 Score=62.24 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=22.2
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhC
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G 472 (554)
.+|.+|+|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999984
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0017 Score=63.94 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.5
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
..+..+.|.||.|+|||||++.|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345679999999999999999999865
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0011 Score=59.54 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|+|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0051 Score=57.92 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=32.3
Q ss_pred cCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHH
Q 008771 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRA 317 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~ 317 (554)
.+|.+|++||.-. +|......|...+.+ .+..+|++|++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 4578999999765 788888888888865 3567888888764
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00093 Score=64.34 Aligned_cols=27 Identities=37% Similarity=0.446 Sum_probs=23.5
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhC
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G 472 (554)
+-.+|.+|+|+|++||||||+.+.|++
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999999986
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.61 E-value=9.5e-05 Score=75.47 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=37.1
Q ss_pred cCCccceeceEEEEecCCE--EEEECCCCCcHHHHHHHHhCCCCCCc
Q 008771 434 YEDRLLFNRANLTIERGEK--TAIIGPNGCGKSTLLKLIMGLEKPRG 478 (554)
Q Consensus 434 y~~~~~l~~vs~~i~~Ge~--iaIvG~NGsGKSTLlk~L~G~~~p~~ 478 (554)
|+...+++.++..|..|+. +.+.||+|+||||+++++++.+.+..
T Consensus 28 ~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 28 YGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp CSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred cCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 4455577778888889988 99999999999999999999765543
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00019 Score=73.47 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=33.3
Q ss_pred eeEEceeEEEECCCE--EEEECCCCccHHHHHHHHHCCCC
Q 008771 111 TVLKDVTWEVKKGEK--VGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 111 ~~l~~isl~i~~Ge~--~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 367778888889998 99999999999999999998653
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00088 Score=61.53 Aligned_cols=26 Identities=38% Similarity=0.492 Sum_probs=22.7
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999853
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0014 Score=67.76 Aligned_cols=31 Identities=35% Similarity=0.689 Sum_probs=25.5
Q ss_pred eeceEEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008771 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 440 l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~ 471 (554)
+.++.++..+| ..+|+|+|||||||++.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 45566666554 89999999999999999985
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00026 Score=72.36 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=31.7
Q ss_pred ceeceEEEEecCCE--EEEECCCCCcHHHHHHHHhCCC
Q 008771 439 LFNRANLTIERGEK--TAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 439 ~l~~vs~~i~~Ge~--iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+++.+++.+.+|++ |+|+|++||||||+.++|++.+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 56777788889998 9999999999999999998854
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00086 Score=62.74 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.6
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
..+++|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0045 Score=62.22 Aligned_cols=56 Identities=18% Similarity=0.325 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHH--c--cCCCeEeecCCCCCCC-H---------------HH------HHHHHHHHccCCCeEEEEecC
Q 008771 262 SGWQMRMSLGKIL--L--QDPDLLLLDEPTNHLD-L---------------DT------IEWLEGYLGKQDVPMVIISHD 315 (554)
Q Consensus 262 GGqrqRv~LAraL--~--~~p~lLlLDEPt~~LD-~---------------~~------~~~l~~~l~~~g~tvIiisHd 315 (554)
-++++.+.++.++ + .+|+++++|=-++-.- . .. ...|..++++.+.++|+|-|=
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 3566656777766 3 4799999998777642 0 11 111233456789999999998
Q ss_pred HH
Q 008771 316 RA 317 (554)
Q Consensus 316 ~~ 317 (554)
+.
T Consensus 172 ~k 173 (333)
T 3io5_A 172 YE 173 (333)
T ss_dssp --
T ss_pred ee
Confidence 76
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00086 Score=61.76 Aligned_cols=35 Identities=29% Similarity=0.209 Sum_probs=27.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEEC
Q 008771 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPR---GGEVLLG 484 (554)
Q Consensus 450 Ge~iaIvG~NGsGKSTLlk~L~G~~~p~---~G~i~~~ 484 (554)
-.+++|+|++|||||||++.|++.+++. -|.|..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~ 43 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeC
Confidence 3589999999999999999999876543 3555554
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0011 Score=63.94 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=24.2
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.+|.+++|+|++||||||+.++|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 568899999999999999999999743
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00084 Score=62.79 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 450 Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
..+|+|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998764
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00076 Score=67.68 Aligned_cols=26 Identities=38% Similarity=0.503 Sum_probs=23.3
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
++.+|+|+|++|+|||||++.|+|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 44589999999999999999999974
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.00028 Score=71.75 Aligned_cols=114 Identities=13% Similarity=0.097 Sum_probs=0.0
Q ss_pred eCCeeeEEceeEEEECC--CEEEEECCCCccHHHHHHHHHCCCC-CCceeEEEcCCCceEEEEecccccccCccHHHHHH
Q 008771 107 YKGVTVLKDVTWEVKKG--EKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFM 183 (554)
Q Consensus 107 y~~~~~l~~isl~i~~G--e~~~lvG~NGsGKSTLlk~i~G~~~-p~~G~I~~~~~~~~i~~v~Q~~~~~~~~tv~e~~~ 183 (554)
+|...+++.+.-.+..| ..+.|.||+|+|||||++.|++.+. ++.+.+.+.
T Consensus 40 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~-------------------------- 93 (353)
T 1sxj_D 40 TAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRIL-------------------------- 93 (353)
T ss_dssp CSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEE--------------------------
T ss_pred hCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceE--------------------------
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCCCCCCChh
Q 008771 184 SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263 (554)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGG 263 (554)
.-.+.+..|-
T Consensus 94 ----------------------------------------------------------------------~~~~~~~~~~ 103 (353)
T 1sxj_D 94 ----------------------------------------------------------------------ELNASDERGI 103 (353)
T ss_dssp ----------------------------------------------------------------------EECSSSCCCH
T ss_pred ----------------------------------------------------------------------EEccccccch
Q ss_pred HHHHHHHHHHHcc----------------CCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHH
Q 008771 264 WQMRMSLGKILLQ----------------DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRA 317 (554)
Q Consensus 264 qrqRv~LAraL~~----------------~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~ 317 (554)
..-+-.+...... ++.+|++|| ...|+......|.+.+.+ ....+|+++++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 104 SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.00074 Score=65.18 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.0
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.-+++|+|++||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999543
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0011 Score=64.40 Aligned_cols=32 Identities=38% Similarity=0.618 Sum_probs=23.6
Q ss_pred ceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 442 ~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
.+++.+.+| +.|+||+|||||||+++|++...
T Consensus 39 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 39 KLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp ----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 333444444 89999999999999999998764
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.027 Score=59.25 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=24.3
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCCCC
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (554)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999876653
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.001 Score=64.73 Aligned_cols=30 Identities=40% Similarity=0.564 Sum_probs=23.3
Q ss_pred eEEEECCCEEEEECCCCccHHHHHHHHHCCCC
Q 008771 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
++.++.| +.|+||+|+|||||+++|++...
T Consensus 41 ~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 41 GGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp --CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 3334444 89999999999999999998763
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0024 Score=61.34 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=24.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~p~~G 479 (554)
+|+|+|++|+|||||++.|+|...+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999998776554
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0011 Score=61.12 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.2
Q ss_pred CEEEEECCCCccHHHHHHHHHCCCCC
Q 008771 124 EKVGLVGVNGAGKTTQLRIIAGQEEP 149 (554)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~p 149 (554)
.+++|+|++|||||||++.|.+.+++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 58999999999999999999987654
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0021 Score=57.99 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0021 Score=57.91 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|+|+|+.||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998653
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0015 Score=63.61 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=29.5
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008771 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (554)
Q Consensus 447 i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~ 486 (554)
..++.+|.|+|++||||||+.+.|+..+.. +.+.+++.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~--~~~~~~~D 66 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQG--NIVIIDGD 66 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTT--CCEEECGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCC--CcEEEecH
Confidence 345678999999999999999999987642 44555543
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0016 Score=63.54 Aligned_cols=38 Identities=34% Similarity=0.276 Sum_probs=29.3
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~ 158 (554)
....+.++.|+|++||||||+.+.|+..+. .|.+.+++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~ 65 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG 65 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec
Confidence 345677899999999999999999998764 23455543
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.029 Score=60.23 Aligned_cols=28 Identities=25% Similarity=0.178 Sum_probs=24.4
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
-+.+|+.+.|.|+.|+|||||+--++-.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHH
Confidence 4889999999999999999998766643
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0027 Score=57.79 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.2
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997653
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0035 Score=64.41 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.8
Q ss_pred CCEEEEECCCCccHHHHHHHHHCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
|-.++|||.+|+|||||++.|+|-
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999983
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.003 Score=57.41 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 450 GEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 450 Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
|..|.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999987654
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0067 Score=55.59 Aligned_cols=28 Identities=39% Similarity=0.717 Sum_probs=21.9
Q ss_pred EEEEECCCCccHHHHHHHH-HCC----CCCCce
Q 008771 125 KVGLVGVNGAGKTTQLRII-AGQ----EEPDSG 152 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i-~G~----~~p~~G 152 (554)
+++|+|+.|+|||||++.+ .+. +.|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 5899999999999999655 444 456655
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0018 Score=62.54 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.0
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhC
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G 472 (554)
..-+|+|+||+||||||+.+.|+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999983
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0082 Score=55.02 Aligned_cols=37 Identities=32% Similarity=0.595 Sum_probs=26.7
Q ss_pred EEEEECCCCCcHHHHHHHHhC-C----CCCCce----EEEECCcee
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG-L----EKPRGG----EVLLGEHNV 488 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G-~----~~p~~G----~i~~~~~~~ 488 (554)
+|+|+|+.|+|||||++.+++ . ..|+.| .+.+++..+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY 67 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence 689999999999999976654 3 456656 455555443
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0017 Score=66.56 Aligned_cols=34 Identities=29% Similarity=0.517 Sum_probs=27.5
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G 479 (554)
-+.+|+++.|.|+||||||||+..++.......|
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~ 90 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG 90 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 5789999999999999999998888755443333
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0021 Score=69.12 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=33.9
Q ss_pred ceEEEEecCCEEEEECCCCCcHHHHHHHHhC--CCCCCceEEEE
Q 008771 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMG--LEKPRGGEVLL 483 (554)
Q Consensus 442 ~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G--~~~p~~G~i~~ 483 (554)
.+.+++.++.++.|+|.+||||||+++.|.. ++++..|.+.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l 202 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRF 202 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEE
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEE
Confidence 4778999999999999999999999999875 44555455544
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0016 Score=67.69 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=36.5
Q ss_pred CeeeEEceeEEEE---CCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEc
Q 008771 109 GVTVLKDVTWEVK---KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (554)
Q Consensus 109 ~~~~l~~isl~i~---~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~ 157 (554)
+.+++-|+ |... .+..++|+|++|||||||++.|++...+..+.|.+-
T Consensus 19 g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 19 GGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp SCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 44566555 3222 567899999999999999999998877777777654
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0013 Score=73.49 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=29.2
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEE
Q 008771 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP--RGGEV 481 (554)
Q Consensus 444 s~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p--~~G~i 481 (554)
++.+.+|.+++|+|+||+|||||++.|++...+ ..|+|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 467788999999999999999999999966544 34544
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0033 Score=57.64 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.4
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
|.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998643
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0026 Score=57.88 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.013 Score=71.04 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=27.0
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHCCCCC
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (554)
|++|+.+.|.|++|+|||||+..++.....
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~ 758 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR 758 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHH
Confidence 899999999999999999999999876543
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0028 Score=59.97 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.7
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhC
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G 472 (554)
.+-+|+|+|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999987
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0028 Score=57.66 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.039 Score=54.72 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=21.8
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+..+.|.||.|+|||||++.|+..+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999888765
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0034 Score=56.34 Aligned_cols=19 Identities=21% Similarity=0.536 Sum_probs=18.3
Q ss_pred EEEEECCCCccHHHHHHHH
Q 008771 125 KVGLVGVNGAGKTTQLRII 143 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i 143 (554)
+++|+|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.004 Score=57.08 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 450 Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
|-+|.|.|+.||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6689999999999999999997643
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0036 Score=58.01 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999755
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.02 Score=53.42 Aligned_cols=69 Identities=20% Similarity=0.137 Sum_probs=47.0
Q ss_pred HHHHHHHHHHc--cCCCeEeecCCCCC--CCHHHHHHHHHHHcc--CCCeEEEEecCH-HHHHhhcceEEEeeCCe
Q 008771 265 QMRMSLGKILL--QDPDLLLLDEPTNH--LDLDTIEWLEGYLGK--QDVPMVIISHDR-AFLDQLCTKIVETEMGV 333 (554)
Q Consensus 265 rqRv~LAraL~--~~p~lLlLDEPt~~--LD~~~~~~l~~~l~~--~g~tvIiisHd~-~~l~~~~d~i~~l~~g~ 333 (554)
+..+..|+..+ .+.|+|||||.+.. ++.-....+.++|.+ ....||+++++. ..+.+.||-|.+|..-+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRPVK 181 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence 33445566666 56899999999864 333344456777654 356777777764 56667899999997654
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0031 Score=61.46 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+++|+|++|||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0031 Score=61.46 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
.|+|+||+|||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0037 Score=56.12 Aligned_cols=19 Identities=42% Similarity=0.572 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 008771 452 KTAIIGPNGCGKSTLLKLI 470 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L 470 (554)
+|+|+|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0011 Score=62.41 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=22.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEKPR 477 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~p~ 477 (554)
+|+|+|++||||||+++.|+..+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999998876543
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0068 Score=64.17 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=37.6
Q ss_pred CChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHH-HHHHccCCCe--EEEEec
Q 008771 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL-EGYLGKQDVP--MVIISH 314 (554)
Q Consensus 260 LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l-~~~l~~~g~t--vIiisH 314 (554)
|+..+.+++.-|...+.+.+++|.|+|. +++...... ..+.++.+.. +|||.+
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 7788888988888888888999999884 566554433 3334445667 887765
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0036 Score=59.12 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=21.4
Q ss_pred CCEEEEECCCCccHHHHHHHHHC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G 145 (554)
+-+++|+|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999997
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0039 Score=57.84 Aligned_cols=23 Identities=43% Similarity=0.439 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|+|+|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998743
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.022 Score=53.05 Aligned_cols=53 Identities=13% Similarity=0.195 Sum_probs=39.3
Q ss_pred cCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCH----------HHHHhhcceEEEee
Q 008771 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR----------AFLDQLCTKIVETE 330 (554)
Q Consensus 276 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~----------~~l~~~~d~i~~l~ 330 (554)
.+.+++++||.-- +|++..+.+..+. +.+.+||+..+|. ..+..+||.|..|.
T Consensus 80 ~~~dvViIDEaqf-l~~~~v~~l~~l~-~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 80 EDTEVIAIDEVQF-FDDEIVEIVNKIA-ESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TTCSEEEECSGGG-SCTHHHHHHHHHH-HTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred ccCCEEEEECCCC-CCHHHHHHHHHHH-hCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 3579999999544 8877766555444 4489999998864 55667899998875
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0045 Score=56.68 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998543
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0012 Score=62.11 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.5
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEP 149 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p 149 (554)
+++|+|++||||||+++.|+..+.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987754
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0032 Score=57.96 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=23.2
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
..+.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998543
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0034 Score=57.79 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.7
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCC
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
.++-.|.|+|+.||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999754
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0018 Score=68.26 Aligned_cols=36 Identities=28% Similarity=0.218 Sum_probs=31.1
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEC
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~ 484 (554)
++.+++++|+|||||||++..|++.+.+..+.|.+-
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 578999999999999999999999888876666553
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0039 Score=61.24 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=32.5
Q ss_pred CCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcceEEEe
Q 008771 286 PTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKIVET 329 (554)
Q Consensus 286 Pt~~LD~~~~~~l~~~l----~~~g~tvIiisHd~~~l~~~~d~i~~l 329 (554)
|||+++..+...+.+.+ .....+..+.+|....+.+.++++...
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~ 191 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISEL 191 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHHH
Confidence 99999988776666654 334455567788888888888887654
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0054 Score=56.14 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.7
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCC
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
.+.+|.|+|+.||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3668999999999999999999754
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0044 Score=57.47 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=21.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 008771 451 EKTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 451 e~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
.+|+|+|+.||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 47999999999999999999985
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0051 Score=55.75 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.2
Q ss_pred CEEEEECCCCccHHHHHHHHHC
Q 008771 124 EKVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G 145 (554)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0057 Score=56.82 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0049 Score=57.25 Aligned_cols=27 Identities=30% Similarity=0.270 Sum_probs=24.5
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
.+|-+|+|+|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999876
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0048 Score=56.33 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=22.7
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
..+.++.|+|++||||||+.+.|+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999843
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0049 Score=57.28 Aligned_cols=21 Identities=52% Similarity=0.771 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 008771 453 TAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 453 iaIvG~NGsGKSTLlk~L~G~ 473 (554)
|.|+||+|||||||++.|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0046 Score=57.34 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.7
Q ss_pred CCEEEEECCCCccHHHHHHHHHCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999975
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.005 Score=57.23 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.5
Q ss_pred EEEECCCCccHHHHHHHHHCCC
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+.|+||+|||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999987554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 554 | ||||
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-36 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 4e-18 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 9e-34 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 6e-22 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-32 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 8e-19 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 9e-31 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-18 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-30 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-18 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 4e-30 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-17 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-29 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-17 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-28 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-20 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-28 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 6e-20 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-27 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-19 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 5e-27 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-18 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-26 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 8e-21 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 8e-25 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-20 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 9e-25 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-16 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 6e-24 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-16 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-23 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 7e-16 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-23 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-19 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 8e-22 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-16 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 9e-22 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 4e-18 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 6e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 7e-15 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-13 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-12 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-05 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-10 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 0.001 |
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 133 bits (336), Expect = 3e-36
Identities = 39/233 (16%), Positives = 83/233 (35%), Gaps = 19/233 (8%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++ ENI K + L V+ V KG+ ++G NG+GK+T + +I G + D G V
Sbjct: 5 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 64
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
++ + + F+ + + + L
Sbjct: 65 NKDITNKE--------PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLF 116
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
+ + + + K K++ L + DR S G + +G+ L+ +
Sbjct: 117 YKKWIPKEEEMV-------EKAFKILEFLKL-SHLYDRKAGELSGGQMKLVEIGRALMTN 168
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKIV 327
P ++++DEP + + + L + + +II H + +
Sbjct: 169 PKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLY 221
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 81.9 bits (202), Expect = 4e-18
Identities = 33/153 (21%), Positives = 58/153 (37%), Gaps = 29/153 (18%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ +N+ + + + ++++ +G+ T IIGPNG GKSTL+ +I G K G V
Sbjct: 3 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 483 LGEHNVLPNYFEQN---------QAEALDLDKTVLETVAEAA------------------ 515
++ + Q + TVLE +
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 516 -EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
E+ ++ +L + DRK LSGG
Sbjct: 123 KEEEMVEKAFKILEFLKLS-HLYDRKAGELSGG 154
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 126 bits (317), Expect = 9e-34
Identities = 56/249 (22%), Positives = 101/249 (40%), Gaps = 52/249 (20%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
VKLEN++K + T + + +K GE + L+G +G GKTT LR+IAG EEP G +
Sbjct: 5 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ I+ + Q + V TV E AF +++ K E ++
Sbjct: 65 FGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYE--NIAFPLKIKKFPKDEIDKRVRW--- 119
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+ + + +R A S G + R
Sbjct: 120 --------AAELLQI---------------------------EELLNRYPAQLSGGQRQR 144
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+++ + ++ +PD+LL+DEP ++LD + ++ K V + ++HD+ +
Sbjct: 145 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG 204
Query: 324 TKIVETEMG 332
+I G
Sbjct: 205 DRIAVMNRG 213
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 92.5 bits (230), Expect = 6e-22
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V ++NL + + N+ NLTI+ GE ++GP+GCGK+T L++I GLE+P G +
Sbjct: 5 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 483 LG--EHNVLPNYFEQ----NQAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGRC 530
G + LP Q+ A+ TV E +A + + ++
Sbjct: 65 FGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELL 124
Query: 531 NFKADMLDRKVSLLSGGEK 549
++L+R + LSGG++
Sbjct: 125 QI-EELLNRYPAQLSGGQR 142
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 122 bits (307), Expect = 4e-32
Identities = 50/240 (20%), Positives = 106/240 (44%), Gaps = 22/240 (9%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ + ++ K Y G VLK V+ + + G+ + ++G +G+GK+T LR I E+P G +I
Sbjct: 3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVN 62
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL- 216
N +++ R + A K ++ + R+ + +L +
Sbjct: 63 GQN-----------INLVRDKDGQLKVADKNQLRLLRT--RLTMVFQ----HFNLWSHMT 105
Query: 217 -LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
L+ + ++ + K + ++G + S G Q R+S+ + L
Sbjct: 106 VLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALA 165
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMG 332
+PD+LL DEPT+ LD + + + + ++ MV+++H+ F + + ++ G
Sbjct: 166 MEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 225
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 84.1 bits (208), Expect = 8e-19
Identities = 34/155 (21%), Positives = 55/155 (35%), Gaps = 28/155 (18%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ + + +L Y + +L G+ +IIG +G GKST L+ I LEKP G ++
Sbjct: 1 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 483 LGEHNVLPNYFEQN---------------------QAEALDLDKTVLETVAEAA------ 515
+ N+ + Q L TVLE V EA
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 120
Query: 516 -EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+ + L + + LSGG++
Sbjct: 121 SKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQ 155
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 118 bits (296), Expect = 9e-31
Identities = 55/241 (22%), Positives = 108/241 (44%), Gaps = 30/241 (12%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+GV+L ++ K + VT +++++ EVK GE + L+G +G GKTT LR+IAG EEP G +
Sbjct: 2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI- 60
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+ ++ ++ ++ + + K + +S +
Sbjct: 61 ---------------------YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVY 99
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
+ K + V +D +V ++ LG + +R S G + R++LG+ ++
Sbjct: 100 ---DNIAFPLKLRKVPRQEIDQRVREVAELLGL-TELLNRKPRELSGGQRQRVALGRAIV 155
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEM 331
+ P + L+DEP ++LD + L K V + ++HD+ + +I
Sbjct: 156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNR 215
Query: 332 G 332
G
Sbjct: 216 G 216
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 82.3 bits (203), Expect = 3e-18
Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 19/145 (13%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ V + ++ + + +L ++ GE ++GP+GCGK+T L++I GLE+P G++
Sbjct: 2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 483 LGEHNVL------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD------IK 524
+G+ V + Q+ AL TV + +A + ++ ++
Sbjct: 62 IGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR 121
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEK 549
+ ++L+RK LSGG++
Sbjct: 122 EVAELLGL-TELLNRKPRELSGGQR 145
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 116 bits (292), Expect = 3e-30
Identities = 53/242 (21%), Positives = 100/242 (41%), Gaps = 52/242 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
V ++++ K +LK +++E+++GE GL+G NGAGKTT LRII+ +P SG V
Sbjct: 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 62
Query: 156 -------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
+ I++L +E + E +AG +E V+
Sbjct: 63 GKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYL-------RFVAGFYASSSSEIEEMVE 115
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
R + L + V+++S G ++
Sbjct: 116 ------RATEIAGL---------------------------GEKIKDRVSTYSKGMVRKL 142
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTK 325
+ + L+ +P L +LDEPT+ LD+ + ++ + +++ SH+ ++ LC +
Sbjct: 143 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDR 202
Query: 326 IV 327
I
Sbjct: 203 IA 204
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 82.0 bits (202), Expect = 3e-18
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 14/138 (10%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V +K+L + + + IE GE +IGPNG GK+T L++I L KP G V +
Sbjct: 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 62
Query: 485 EHNVLPNYFEQN-------QAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGRCN 531
NV+ E + + +E + A + ++
Sbjct: 63 GKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAG 122
Query: 532 FKADMLDRKVSLLSGGEK 549
+ + +VS S G
Sbjct: 123 L-GEKIKDRVSTYSKGMV 139
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 116 bits (291), Expect = 4e-30
Identities = 45/243 (18%), Positives = 90/243 (37%), Gaps = 54/243 (22%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK-- 156
+++++ Y + +K + +V +G+ V L+G NGAGKTT L IAG G +I
Sbjct: 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67
Query: 157 ---------AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ M IA + + + TV E M E +++ LE
Sbjct: 68 QDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMG----AYNRKDKEGIKRDLE--- 120
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+ F L+ + +L + S G Q
Sbjct: 121 -------WIFSLFPRLKERL--------------------------KQLGGTLSGGEQQM 147
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCT 324
+++G+ L+ P LL++DEP+ L + + + ++ ++++ + ++
Sbjct: 148 LAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAH 207
Query: 325 KIV 327
Sbjct: 208 YGY 210
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 80.3 bits (198), Expect = 1e-17
Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 20/143 (13%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
V+ +++L Y +L + RG+ +IG NG GK+T L I GL + + G+++
Sbjct: 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 484 GEHNVLPNYFEQ---------NQAEALDLDKTVLETVA--------EAAEDWRIDDIKGL 526
++ + + + TV E + + ++ I L
Sbjct: 66 NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSL 125
Query: 527 LGRCNFKADMLDRKVSLLSGGEK 549
R + L + LSGGE+
Sbjct: 126 FPR---LKERLKQLGGTLSGGEQ 145
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 113 bits (285), Expect = 2e-29
Identities = 52/257 (20%), Positives = 101/257 (39%), Gaps = 59/257 (22%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+KL+N++K+YK + LK+V +K+GE V ++G +G+GK+T L II ++P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 154 V--------------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199
V + KI F+ Q+F + T E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVE---------------- 105
Query: 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
L+ + A++ + + + + +
Sbjct: 106 --------------------LPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQ 145
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
S G Q R+++ + L +P ++L D+PT LD T ++ L+ + +V+++HD
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
Query: 316 RAFLDQLCTKIVETEMG 332
+ +I+ + G
Sbjct: 206 INVA-RFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 79.5 bits (196), Expect = 2e-17
Identities = 39/150 (26%), Positives = 57/150 (38%), Gaps = 25/150 (16%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ +KN+ Y+ A NL I+ GE +I+GP+G GKST+L +I L+KP GE
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 481 VLLGEHNV-------LPNYFEQN-----QAEALDLDKTVLETVAEAAE---------DWR 519
V + L Q L T LE V + R
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
L + + K + LSGG++
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQ 151
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 112 bits (282), Expect = 2e-28
Identities = 52/265 (19%), Positives = 104/265 (39%), Gaps = 44/265 (16%)
Query: 66 VESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEK 125
+E++ + + F +QSN S + G VLK++ ++KGE
Sbjct: 5 MENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEM 64
Query: 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185
+ + G G+GKT+ L +I G+ E G + K + +++F SQ + M T++E +
Sbjct: 65 LAITGSTGSGKTSLLMLILGELEASEGII---KHSGRVSFCSQFSWI-MPGTIKENII-- 118
Query: 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245
++ R + +++ D+ + + + +
Sbjct: 119 ----FGVSYDEYRYKSVVKACQLQQDITKF----------------AEQDNTVLGEGGVT 158
Query: 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL---EGYL 302
L S G + R+SL + + +D DL LLD P +LD+ T E +
Sbjct: 159 L--------------SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 204
Query: 303 GKQDVPMVIISHDRAFLDQLCTKIV 327
+ ++++ L + KI+
Sbjct: 205 LMANKTRILVTSKMEHL-RKADKIL 228
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 88.0 bits (218), Expect = 5e-20
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 15/133 (11%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V+ +L L NL IE+GE AI G G GK++LL LI+G + G +
Sbjct: 39 VSFSHLCLVGNPVL--KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 96
Query: 485 --------EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM 536
++P ++N + D+ ++V +A + DI + N +
Sbjct: 97 GRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQ--QDITKFAEQDN---TV 151
Query: 537 LDRKVSLLSGGEK 549
L LSGG++
Sbjct: 152 LGEGGVTLSGGQR 164
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 109 bits (274), Expect = 3e-28
Identities = 49/234 (20%), Positives = 92/234 (39%), Gaps = 53/234 (22%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
S +++ ++S Y VL+ +T ++KG V G NG GKTT L+ I+ +P G +I
Sbjct: 1 SKLEIRDLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 156 -----KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDM 210
K KI FL +E V +V E+++ A + + ALE
Sbjct: 60 YNGVPITKVKGKIFFLPEEIIVPRKISV-EDYLKAVASLYGVKVNKNEIMDALE------ 112
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
++L D + + S G R+ L
Sbjct: 113 --------SVEVL----------------------------DLKKKLGELSQGTIRRVQL 136
Query: 271 GKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLD 320
LL + ++ +LD+P +D D+ ++ + L ++ + ++ + ++ D
Sbjct: 137 ASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCD 190
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 86.1 bits (213), Expect = 6e-20
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 6/131 (4%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S + I++L GY D+ + R +TIE+G GPNG GK+TLLK I KP GE++
Sbjct: 1 SKLEIRDLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 483 LG---EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLD- 538
V F + + +V + + A + + K + ++LD
Sbjct: 60 YNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL 119
Query: 539 -RKVSLLSGGE 548
+K+ LS G
Sbjct: 120 KKKLGELSQGT 130
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 108 bits (271), Expect = 1e-27
Identities = 57/247 (23%), Positives = 101/247 (40%), Gaps = 52/247 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
V+L+N++K++ V V KD+ ++ +GE V VG +G GK+T LR+IAG E SG++
Sbjct: 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 60
Query: 156 ------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
+ + + Q + + +V E K + A K Q+ +
Sbjct: 61 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLK--LAGAKKEVINQRVNQ----- 113
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ + L A DR + S G + R++
Sbjct: 114 ------VAEVLQL---------------------------AHLLDRKPKALSGGQRQRVA 140
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY----LGKQDVPMVIISHDRAFLDQLCTK 325
+G+ L+ +P + LLDEP ++LD + + M+ ++HD+ L K
Sbjct: 141 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADK 200
Query: 326 IVETEMG 332
IV + G
Sbjct: 201 IVVLDAG 207
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 85.0 bits (210), Expect = 3e-19
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 13/137 (9%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++N+ + + ++ NL I GE +GP+GCGKSTLL++I GLE G++ +G
Sbjct: 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 60
Query: 485 EHNVL------PNYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLGRCNF 532
E + Q+ AL +V E ++ + + + +
Sbjct: 61 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL 120
Query: 533 KADMLDRKVSLLSGGEK 549
A +LDRK LSGG++
Sbjct: 121 -AHLLDRKPKALSGGQR 136
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 107 bits (268), Expect = 5e-27
Identities = 56/258 (21%), Positives = 103/258 (39%), Gaps = 65/258 (25%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+KL NI+K + + L +V+ V G+ G++G +GAGK+T +R + E P G+
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 154 VI-------------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLER 198
V+ K+ +I + Q F + SRTV +E+ K E
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVA----LPLELDNTPKDEV 117
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
++ E LL L D D +
Sbjct: 118 KRRVTE-----------LLSLVGL---------------------------GDKHDSYPS 139
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQ-DVPMVIISH 314
+ S G + R+++ + L +P +LL DE T+ LD +I L + ++ + +++I+H
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITH 199
Query: 315 DRAFLDQLCTKIVETEMG 332
+ + ++C + G
Sbjct: 200 EMDVVKRICDCVAVISNG 217
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 81.5 bits (201), Expect = 4e-18
Identities = 36/146 (24%), Positives = 55/146 (37%), Gaps = 22/146 (15%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ + N+ + +A +L + G+ +IG +G GKSTL++ + LE+P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 481 VLLGEHNVLP-----------NYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDI 523
VL+ + Q L +TV VA E D +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEK 549
LL D D S LSGG+K
Sbjct: 122 TELLSLVGL-GDKHDSYPSNLSGGQK 146
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 106 bits (265), Expect = 2e-26
Identities = 57/248 (22%), Positives = 99/248 (39%), Gaps = 49/248 (19%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
+ ++++S Y +LKD+ ++KGE V VG++G GK+T + +I + SG +
Sbjct: 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 76
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
S L Q+ + S TV+E + + E V +A + A
Sbjct: 77 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD-----EEVVEAAKMA 131
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
D L D +V S G +
Sbjct: 132 --------NAHDFIMNLP--------QGYDTEV--------------GERGVKLSGGQKQ 161
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCT 324
R+S+ +I L +P +L+LDE T+ LDL++ ++ L +D +I++H + +
Sbjct: 162 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTI-THAD 220
Query: 325 KIVETEMG 332
KIV E G
Sbjct: 221 KIVVIENG 228
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 89.9 bits (223), Expect = 8e-21
Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 19/144 (13%)
Query: 425 VTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ I ++ F Y D + NL+IE+GE A +G +G GKSTL+ LI G++L
Sbjct: 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 76
Query: 483 LGEHNV-------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK-- 533
+ HN+ L N Q + + TV E + +++ N
Sbjct: 77 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDF 136
Query: 534 --------ADMLDRKVSLLSGGEK 549
+ + LSGG+K
Sbjct: 137 IMNLPQGYDTEVGERGVKLSGGQK 160
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 101 bits (252), Expect = 8e-25
Identities = 36/241 (14%), Positives = 87/241 (36%), Gaps = 35/241 (14%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+ ++ +Y +L+D+++E + + G +G GK+T ++ +P +G +
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 156 --KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ N+ + ++ +E + + + + L +D
Sbjct: 62 DGQPIDNISLENWRS--QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
+ + D L + S G + R+++ +
Sbjct: 120 SFVENMPDQLNTEV--------------------------GERGVKISGGQRQRLAIARA 153
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEM 331
L++P +L+LDE T LD ++ ++ L + ++I+H + + KI E
Sbjct: 154 FLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTI-VDADKIYFIEK 212
Query: 332 G 332
G
Sbjct: 213 G 213
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 89.2 bits (221), Expect = 1e-20
Identities = 23/148 (15%), Positives = 56/148 (37%), Gaps = 25/148 (16%)
Query: 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+++ ++++F Y+D + + + A GP+G GKST+ L+ +P GE+
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 483 LG---------------------EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521
+ + ++ +N L+ D T + +
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 522 DIKGLLGRCNFKADMLDRKVSLLSGGEK 549
++ + + N + + +SGG++
Sbjct: 121 FVENMPDQLN---TEVGERGVKISGGQR 145
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 101 bits (253), Expect = 9e-25
Identities = 48/249 (19%), Positives = 105/249 (42%), Gaps = 50/249 (20%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++ N++ +Y G V L+++ ++ G+ V LVG +G+GK+T +I + D G+++
Sbjct: 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
A ++A +SQ + + +E E++++A
Sbjct: 74 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR-----EQIEEAARM 128
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A +D + + + LD + S G +
Sbjct: 129 A--------YAMDFINKMD--------NGLDTII--------------GENGVLLSGGQR 158
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323
R+++ + LL+D +L+LDE T+ LD ++ ++ L + ++ ++I+H + + +
Sbjct: 159 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI-EQA 217
Query: 324 TKIVETEMG 332
+IV E G
Sbjct: 218 DEIVVVEDG 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 76.8 bits (189), Expect = 2e-16
Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 24/147 (16%)
Query: 425 VTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +N+ F Y R NL I G+ A++G +G GKST+ LI G +L
Sbjct: 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
Query: 483 LGEHNV--------------------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD 522
+ H++ L N N ++ E + EAA D
Sbjct: 74 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMD 133
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEK 549
+ N ++ LLSGG++
Sbjct: 134 FINKMD--NGLDTIIGENGVLLSGGQR 158
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 98.1 bits (244), Expect = 6e-24
Identities = 56/250 (22%), Positives = 89/250 (35%), Gaps = 70/250 (28%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
++L+++++S T L ++ EV+ GE + LVG NGAGK+T L +AG G++
Sbjct: 4 MQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFA 58
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
K + A+LSQ+ + V + E +
Sbjct: 59 GQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLT----LHQHDKTRTELLNDVAG--- 111
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
A+ LD D R S G R
Sbjct: 112 ---------------------ALALD-----------------DKLGRSTNQLSGGEWQR 133
Query: 268 MSLGKILLQ-------DPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRA 317
+ L ++LQ LLLLDEP N LD+ L+ L +Q + +V+ SHD
Sbjct: 134 VRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN 193
Query: 318 FLDQLCTKIV 327
+ +
Sbjct: 194 HTLRHAHRAW 203
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 77.3 bits (190), Expect = 1e-16
Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 11/133 (8%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
V+ ++++ + + GE ++GPNG GKSTLL + G+ +G
Sbjct: 3 VMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFA 58
Query: 484 GE-------HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM 536
G+ + + +Q + V + D ++ + D
Sbjct: 59 GQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK 118
Query: 537 LDRKVSLLSGGEK 549
L R + LSGGE
Sbjct: 119 LGRSTNQLSGGEW 131
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 97.5 bits (242), Expect = 1e-23
Identities = 57/257 (22%), Positives = 104/257 (40%), Gaps = 61/257 (23%)
Query: 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ ++N+SK +K V L +V ++ GE+ G++G +GAGKTT +RIIAG + P +G
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 154 V-------------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK-EEMEIAGKLERV 199
+ I + KI + Q + + + T E +M +RV
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
++ + +D+ L +
Sbjct: 122 EEVAK----ILDIHHVL-------------------------------------NHFPRE 140
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315
S Q R++L + L++DP LLLLDEP ++LD + + + V ++++SHD
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200
Query: 316 RAFLDQLCTKIVETEMG 332
A + + ++ G
Sbjct: 201 PADIFAIADRVGVLVKG 217
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 75.1 bits (184), Expect = 7e-16
Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 20/146 (13%)
Query: 423 SVVTIKNL--EFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ +KN+ F + + N+ IE GE+ I+GP+G GK+T +++I GL+ P GE
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 481 VLLGEHNVLPNYFEQ-----------NQAEALDLDKTVLETVAEAAE------DWRIDDI 523
+ + V N Q AL + T E +A + +
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEK 549
+ + + +L+ LSG ++
Sbjct: 122 EEVAKILDIH-HVLNHFPRELSGAQQ 146
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.7 bits (243), Expect = 2e-23
Identities = 46/252 (18%), Positives = 101/252 (40%), Gaps = 53/252 (21%)
Query: 98 VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
V+ +++S +Y V VL+ +T+ ++ GE LVG NG+GK+T ++ +P G +
Sbjct: 12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
Query: 155 I----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
+ + ++A + QE +V R+++E ++ + K+
Sbjct: 72 LLDGKPLPQYEHRYLHRQVAAVGQEPQV-FGRSLQENIAYGLTQKPTMEEITAAAVKSGA 130
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
+ L +D + D + S G
Sbjct: 131 -----HSFISGLPQGYD-----------------------------TEVDEAGSQLSGGQ 156
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLD 320
+ ++L + L++ P +L+LD+ T+ LD ++ +E L + +++I+ + +
Sbjct: 157 RQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLV- 215
Query: 321 QLCTKIVETEMG 332
+ I+ E G
Sbjct: 216 EQADHILFLEGG 227
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.5 bits (214), Expect = 1e-19
Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 27/149 (18%)
Query: 425 VTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
V +++ F Y +R L+ T+ GE TA++GPNG GKST+ L+ L +P GG++
Sbjct: 12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
Query: 482 LLGEHNV---------------------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520
LL + ++N A L T+ E A A +
Sbjct: 72 LLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAH 131
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
I GL + +D S LSGG++
Sbjct: 132 SFISGLPQGYD---TEVDEAGSQLSGGQR 157
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 92.3 bits (229), Expect = 8e-22
Identities = 45/249 (18%), Positives = 97/249 (38%), Gaps = 51/249 (20%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ NI YK +L ++ +K+GE +G+VG +G+GK+T ++I P++G V+
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
++ + Q+ ++R++ + A K+ K
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNV-LLNRSIIDNISLA--NPGMSVEKVIYAAKLAG- 117
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A D + + + A S G +
Sbjct: 118 AHDFISELREGYNTIV--------------------------------GEQGAGLSGGQR 145
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323
R+++ + L+ +P +L+ DE T+ LD ++ + + K + ++II+H + + +
Sbjct: 146 QRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTV-KNA 204
Query: 324 TKIVETEMG 332
+I+ E G
Sbjct: 205 DRIIVMEKG 213
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 76.9 bits (189), Expect = 2e-16
Identities = 31/145 (21%), Positives = 63/145 (43%), Gaps = 21/145 (14%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +N+ F Y + ++ + NL+I++GE I+G +G GKSTL KLI P G+VL
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 483 LGEHNVL-----------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKG 525
+ H++ ++ + + L + +V + ++
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM-SVEKVIYAAKLAGAHD 120
Query: 526 LLGRCNFKADML-DRKVSLLSGGEK 549
+ + + + + LSGG++
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQR 145
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 92.0 bits (228), Expect = 9e-22
Identities = 57/247 (23%), Positives = 99/247 (40%), Gaps = 56/247 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++E++S+ +K L +++ +V+ GE ++G GAGKT L +IAG PDSG ++
Sbjct: 2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLD 60
Query: 156 ------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
+ IAF+ Q + + V++ F M+ +RV D
Sbjct: 61 GKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK--NLEFGMRMKKIKDPKRVLDTAR----D 114
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ + L DR + S G Q R++
Sbjct: 115 LKIEHLL-------------------------------------DRNPLTLSGGEQQRVA 137
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325
L + L+ +P +LLLDEP + LD T E L + ++ I+HD+ + +
Sbjct: 138 LARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADR 197
Query: 326 IVETEMG 332
I G
Sbjct: 198 IAVVMDG 204
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 81.3 bits (200), Expect = 4e-18
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 11/135 (8%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ I++L +++ L + +L +E GE I+GP G GK+ L+LI G P G +LL
Sbjct: 1 MIEIESLSRKWKNFSL-DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59
Query: 484 GEHNVLPNYFEQ------NQAEALDLDKTVLETVAEAAEDWRIDD---IKGLLGRCNFKA 534
+V E+ Q +L V + + +I D + +
Sbjct: 60 DGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE- 118
Query: 535 DMLDRKVSLLSGGEK 549
+LDR LSGGE+
Sbjct: 119 HLLDRNPLTLSGGEQ 133
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 72.4 bits (177), Expect = 6e-15
Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 10/130 (7%)
Query: 430 LEFGYEDRLLFNRANLTIE-RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
L+ E RL R N+ E + ++GP G GKS L+LI G+ KP GEV L ++
Sbjct: 3 LKVRAEKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI 62
Query: 489 LP------NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGL---LGRCNFKADMLDR 539
P Q AL +V +A + + + A +LDR
Sbjct: 63 TPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDR 122
Query: 540 KVSLLSGGEK 549
K + LSGGE+
Sbjct: 123 KPARLSGGER 132
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 72.4 bits (177), Expect = 7e-15
Identities = 52/243 (21%), Positives = 88/243 (36%), Gaps = 57/243 (23%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI------ 155
K + +V +E+ + L+G GAGK+ L +IAG +PD G V
Sbjct: 6 RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI 62
Query: 156 --KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
I F+ Q++ + +V + +E + RV++ E + L+
Sbjct: 63 TPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLR-NVERVERDRRVREMAE-KLGIAHLL 120
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
DR A S G + R++L +
Sbjct: 121 ----------------------------------------DRKPARLSGGERQRVALARA 140
Query: 274 LLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329
L+ P LLLLDEP + +D +E L + DVP++ ++HD L ++
Sbjct: 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVM 200
Query: 330 EMG 332
G
Sbjct: 201 LNG 203
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 57.3 bits (137), Expect = 3e-10
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF 493
K I G G GK+TL+K I+ R E
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKK 43
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 47.3 bits (111), Expect = 7e-07
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
K+ + G G GKTT ++ I + +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFW 32
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 38.0 bits (87), Expect = 0.001
Identities = 7/81 (8%), Positives = 22/81 (27%), Gaps = 3/81 (3%)
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL--DTIEWLEGYLGKQDVPMVI 311
+ + + + + ++++DE + + + +V +V
Sbjct: 76 NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVA 135
Query: 312 ISHDRAFLDQLCTKIVETEMG 332
R L +I
Sbjct: 136 TIPIRDVH-PLVKEIRRLPGA 155
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 554 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.96 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.96 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.96 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.95 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.95 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.95 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.95 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.95 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.94 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.93 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.93 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.93 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.92 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.92 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.92 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.92 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.92 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.91 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.86 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.86 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.85 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.69 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.64 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.09 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.97 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.78 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.43 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.2 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.91 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.62 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.33 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.31 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.21 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.18 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.04 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.01 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.0 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.99 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.98 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.95 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.94 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.91 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.89 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.87 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.82 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.78 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.76 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.75 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.71 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.7 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.65 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.63 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.62 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.6 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.59 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.56 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 96.54 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.54 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.53 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.51 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.46 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.44 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.43 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.4 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.36 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.33 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.33 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.33 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.33 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.33 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.31 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.3 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.28 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.25 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.23 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.21 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.2 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.13 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.13 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.11 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.05 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.97 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.94 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.93 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.92 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.91 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.9 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.89 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.86 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.85 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.84 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.83 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.83 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.83 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.81 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.8 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.8 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.79 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.79 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.79 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.78 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.78 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.78 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.77 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 95.74 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.72 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.71 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 95.71 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.7 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.69 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.68 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.68 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.64 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.63 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.61 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.6 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.6 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.59 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.59 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.57 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.54 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.51 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.51 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.51 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.5 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.49 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.49 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.47 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.46 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.44 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.43 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.42 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.41 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.4 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.38 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.37 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.33 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.31 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.3 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.3 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.3 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.28 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.26 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.25 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.24 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.23 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.22 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.22 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.21 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.19 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.19 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.19 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.18 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.17 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.17 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.16 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.16 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.16 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.15 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.14 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.05 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.03 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.01 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.01 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.01 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.0 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.0 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.99 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.96 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.95 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.94 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.92 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.9 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.88 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.88 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.83 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.8 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.79 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.79 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.79 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 94.78 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.76 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.73 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.73 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.7 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.7 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.69 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.67 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.65 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.64 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.63 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.6 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.58 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.58 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.57 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.54 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.54 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.52 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.52 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.5 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.49 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.46 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.44 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.44 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.43 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.43 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.42 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.39 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.35 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.35 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.34 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.34 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 94.33 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.33 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.33 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.28 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.27 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.26 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.26 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.22 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.21 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.2 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.2 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 94.19 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 94.19 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.15 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.1 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 94.09 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 94.08 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 94.08 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.07 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 94.07 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 94.07 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.06 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.04 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.03 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.01 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.01 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.0 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.99 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.99 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.96 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.96 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.94 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.94 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 93.94 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.94 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.92 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 93.92 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.91 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.91 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 93.9 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 93.88 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.83 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.83 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.79 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.79 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.79 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.76 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.76 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.75 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.71 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 93.7 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.68 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.68 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 93.65 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.62 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.55 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 93.53 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.53 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.53 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.5 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.49 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.49 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 93.48 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 93.46 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.44 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.43 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.41 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 93.38 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.38 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.36 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 93.35 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.35 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.33 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.33 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.32 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 93.3 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.29 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.28 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.26 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.26 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 93.25 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.23 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 93.21 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.19 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.19 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.15 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 93.15 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 93.13 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.13 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 93.07 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.06 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.06 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 93.04 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 93.04 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.03 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.02 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 93.02 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 93.01 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.01 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.99 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.99 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.99 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.97 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.97 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 92.96 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.94 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.91 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.9 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.87 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.86 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 92.84 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.81 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.81 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.8 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.79 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.77 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.77 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 92.73 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 92.71 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.7 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 92.69 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 92.67 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.64 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.59 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 92.59 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.53 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.52 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.52 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.51 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.5 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 92.48 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.47 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 92.44 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.43 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.43 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 92.37 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.36 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 92.33 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.33 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 92.33 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.31 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.3 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.28 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 92.28 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 92.21 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 92.19 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 92.18 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 92.16 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 92.14 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 92.13 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.1 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.04 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 91.99 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.96 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 91.95 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.91 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 91.85 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.74 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 91.72 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.58 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.57 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.57 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.5 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.44 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 91.34 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 91.3 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.12 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.84 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.71 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 90.71 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 90.7 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 90.66 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 90.66 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 90.55 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 90.51 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 90.47 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 90.41 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 90.33 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 90.32 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 90.15 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 90.12 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 90.07 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 89.98 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 89.97 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 89.83 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 89.75 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 89.56 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 89.3 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 89.29 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 89.21 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 89.05 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 89.01 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 88.92 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 88.88 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 88.71 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 88.7 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.7 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 88.62 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 88.39 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.31 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 88.26 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.23 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 87.95 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 87.9 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.87 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 87.78 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.59 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 87.57 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 87.35 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 87.27 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 87.24 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 87.16 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 87.03 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 86.88 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 86.78 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 86.67 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 86.57 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 86.5 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 86.31 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 86.3 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 86.24 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 86.22 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 85.9 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 85.87 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 85.85 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 85.75 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 84.98 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 84.98 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 84.54 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 84.06 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 84.05 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 83.98 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 83.74 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 83.73 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 83.65 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 83.52 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 83.41 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 83.0 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 83.0 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 82.88 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 82.8 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 82.73 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 82.61 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 82.54 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 82.4 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 81.57 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 80.66 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 80.65 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.1e-54 Score=419.05 Aligned_cols=210 Identities=28% Similarity=0.411 Sum_probs=181.3
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc--------eEEEEe
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLS 167 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~--------~i~~v~ 167 (554)
..|+++||+|+|++..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +|||||
T Consensus 5 ~~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~ 84 (239)
T d1v43a3 5 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 84 (239)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred CeEEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEe
Confidence 349999999999999999999999999999999999999999999999999999999999998642 499999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
|++.+++.+||.||+...... ..++..+.++++.++|+.+|
T Consensus 85 Q~~~l~~~ltv~enl~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~~ 125 (239)
T d1v43a3 85 QSYAVWPHMTVYENIAFPLKI---------------------------------------KKFPKDEIDKRVRWAAELLQ 125 (239)
T ss_dssp C------CCCHHHHHHTTCC-----------------------------------------CCCHHHHHHHHHHHHHHTT
T ss_pred echhhcccchHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHHcC
Confidence 999999999999998643210 12344566788999999999
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhc
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLC 323 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~ 323 (554)
|+ +..++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++++ +.|.|||+||||++++.++|
T Consensus 126 l~-~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~ 204 (239)
T d1v43a3 126 IE-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG 204 (239)
T ss_dssp CG-GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHC
T ss_pred Ch-hhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhC
Confidence 96 57899999999999999999999999999999999999999999988888764 35999999999999999999
Q ss_pred ceEEEeeCCeeeeccCChhHHHH
Q 008771 324 TKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 324 d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
|||++|++|++ +..|+.++...
T Consensus 205 dri~vm~~G~i-v~~G~~~el~~ 226 (239)
T d1v43a3 205 DRIAVMNRGQL-LQIGSPTEVYL 226 (239)
T ss_dssp SEEEEEETTEE-EEEECHHHHHH
T ss_pred CEEEEEECCEE-EEEcCHHHHHh
Confidence 99999999998 57788776654
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=3.9e-54 Score=417.79 Aligned_cols=210 Identities=29% Similarity=0.437 Sum_probs=186.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------------c
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------M 161 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------------~ 161 (554)
..|+++||+|+|++.++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+ .
T Consensus 2 ~~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r 81 (240)
T d1g2912 2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred CcEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccc
Confidence 35899999999999999999999999999999999999999999999999999999999998843 2
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
.||||||++.+++.+||.||+..+.. ...++..+.++++.+
T Consensus 82 ~ig~v~Q~~~L~~~ltV~eni~~~~~---------------------------------------~~~~~~~e~~~~v~~ 122 (240)
T d1g2912 82 DIAMVFQSYALYPHMTVYDNIAFPLK---------------------------------------LRKVPRQEIDQRVRE 122 (240)
T ss_dssp SEEEECSCCCCCTTSCHHHHHHHHHH---------------------------------------HTTCCHHHHHHHHHH
T ss_pred cceecccchhhcchhhhhHhhhhhHH---------------------------------------HcCCCHHHHHHHHHH
Confidence 59999999999999999999864321 012344567788999
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~ 317 (554)
+++.+|+. +..+++|++|||||||||+|||||+.+|+||||||||++||+.++..+.+.++ +.|.|||+||||++
T Consensus 123 ~l~~~~l~-~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~ 201 (240)
T d1g2912 123 VAELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201 (240)
T ss_dssp HHHHHTCG-GGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred HHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH
Confidence 99999996 57799999999999999999999999999999999999999999988888764 35999999999999
Q ss_pred HHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
++..+||||++|++|++ +..|+..+...
T Consensus 202 ~~~~~~drv~vm~~G~i-v~~G~~~el~~ 229 (240)
T d1g2912 202 EAMTMGDRIAVMNRGVL-QQVGSPDEVYD 229 (240)
T ss_dssp HHHHHCSEEEEEETTEE-EEEECHHHHHH
T ss_pred HHHHhCCEEEEEECCEE-EEEcCHHHHHh
Confidence 99999999999999998 45677766543
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-54 Score=418.66 Aligned_cols=208 Identities=27% Similarity=0.420 Sum_probs=153.1
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc--------eEEEEecc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQE 169 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~--------~i~~v~Q~ 169 (554)
|+++||+|+|++..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. .||||||+
T Consensus 1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~ 80 (232)
T d2awna2 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQS 80 (232)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSS
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccc
Confidence 6899999999999999999999999999999999999999999999999999999999998643 59999999
Q ss_pred cccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCC
Q 008771 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (554)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (554)
+.+++.+||+||+..+... ..++..+.++++.++++.+++.
T Consensus 81 ~~l~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~l~~~~l~ 121 (232)
T d2awna2 81 YALYPHLSVAENMSFGLKL---------------------------------------AGAKKEVINQRVNQVAEVLQLA 121 (232)
T ss_dssp CCC------------------------------------------------------------CHHHHHHHHHHHHC---
T ss_pred cccccchhHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHhCCCh
Confidence 9999999999998643210 1123456678899999999997
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcce
Q 008771 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTK 325 (554)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d~ 325 (554)
+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+ +.|+|||+||||++++..+|||
T Consensus 122 -~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dr 200 (232)
T d2awna2 122 -HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADK 200 (232)
T ss_dssp -------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSE
T ss_pred -hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 57899999999999999999999999999999999999999999888877663 4699999999999999999999
Q ss_pred EEEeeCCeeeeccCChhHHHH
Q 008771 326 IVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 326 i~~l~~g~~~~~~G~~~~~~~ 346 (554)
|++|++|++ ...|+..+.+.
T Consensus 201 i~vm~~G~i-v~~G~~~el~~ 220 (232)
T d2awna2 201 IVVLDAGRV-AQVGKPLELYH 220 (232)
T ss_dssp EEEEETTEE-EEEECHHHHHH
T ss_pred EEEEECCEE-EEEeCHHHHHh
Confidence 999999998 56677776554
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.8e-53 Score=412.74 Aligned_cols=209 Identities=25% Similarity=0.386 Sum_probs=184.3
Q ss_pred cEEEEeEEEEe--CCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-------------c
Q 008771 97 GVKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (554)
Q Consensus 97 ~i~~~~ls~~y--~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-------------~ 161 (554)
.|+++||+|+| +...+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 48999999999 55789999999999999999999999999999999999999999999998853 2
Q ss_pred eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 008771 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (554)
Q Consensus 162 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (554)
+||||||++.+++.+||+||+..+... ..++..+.++++.+
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~---------------------------------------~~~~~~~~~~~v~~ 123 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTN---------------------------------------MKMSKEEIRKRVEE 123 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTT---------------------------------------SSCCHHHHHHHHHH
T ss_pred cceEEeccccccccccHHHHhhhhhHh---------------------------------------hcCCHHHHHHHHHH
Confidence 599999999999999999999754310 02334556788999
Q ss_pred HhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 008771 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (554)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~ 317 (554)
+++.+||. +..+++|++|||||||||+|||||+.+|++|||||||++||+.++..+.+.++ +.|.|+|+||||++
T Consensus 124 ~l~~~gL~-~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~ 202 (242)
T d1oxxk2 124 VAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA 202 (242)
T ss_dssp HHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred HHhhcChH-hhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH
Confidence 99999996 67899999999999999999999999999999999999999999888887654 35999999999999
Q ss_pred HHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 318 ~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
++.++||||++|++|++ +..|+..+...
T Consensus 203 ~~~~~~dri~vm~~G~i-v~~g~~~el~~ 230 (242)
T d1oxxk2 203 DIFAIADRVGVLVKGKL-VQVGKPEDLYD 230 (242)
T ss_dssp HHHHHCSEEEEEETTEE-EEEECHHHHHH
T ss_pred HHHHhCCEEEEEECCEE-EEEcCHHHHHh
Confidence 99999999999999997 56677665543
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.5e-53 Score=408.85 Aligned_cols=205 Identities=27% Similarity=0.384 Sum_probs=180.6
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc--------eEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~--------~i~~v~Q 168 (554)
+|+++||+|+|++ .+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. .||||||
T Consensus 1 mi~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q 79 (229)
T d3d31a2 1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (229)
T ss_dssp CEEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeecc
Confidence 4899999999986 489999999999999999999999999999999999999999999998643 5999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++.+||.||+..+... .. ....+++.++++.+|+
T Consensus 80 ~~~l~~~~tV~enl~~~~~~---------------------------------------~~---~~~~~~~~~~l~~~~l 117 (229)
T d3d31a2 80 NYSLFPHMNVKKNLEFGMRM---------------------------------------KK---IKDPKRVLDTARDLKI 117 (229)
T ss_dssp TCCCCTTSCHHHHHHHHHHH---------------------------------------HC---CCCHHHHHHHHHHTTC
T ss_pred ccccCccccHHHHHHHHHhh---------------------------------------cc---ccHHHHHHHHHHHhcc
Confidence 99999999999998643210 01 1124578888999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d 324 (554)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++++ +.|.|||+||||++++.++||
T Consensus 118 ~-~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~d 196 (229)
T d3d31a2 118 E-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMAD 196 (229)
T ss_dssp T-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCS
T ss_pred h-hhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCC
Confidence 6 57799999999999999999999999999999999999999999988887763 469999999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHHHH
Q 008771 325 KIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||++|++|++ ++.|+.++...
T Consensus 197 rv~vm~~G~i-v~~g~~~el~~ 217 (229)
T d3d31a2 197 RIAVVMDGKL-IQVGKPEEIFE 217 (229)
T ss_dssp EEEEESSSCE-EEEECHHHHHS
T ss_pred EEEEEECCEE-EEEcCHHHHHh
Confidence 9999999998 57788776543
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.4e-53 Score=407.66 Aligned_cols=202 Identities=26% Similarity=0.376 Sum_probs=174.7
Q ss_pred cEEEEeEEEEeCC----eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------
Q 008771 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------- 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~----~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------- 161 (554)
+|+++||+|+|+. ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence 4899999999953 2489999999999999999999999999999999999999999999998542
Q ss_pred ---eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 008771 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (554)
Q Consensus 162 ---~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (554)
.||||||++.+++.+||.||+..+... .. .......+...+
T Consensus 81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~---------------~~---------------------~~~~~~~~~~~~ 124 (230)
T d1l2ta_ 81 RRDKIGFVFQQFNLIPLLTALENVELPLIF---------------KY---------------------RGAMSGEERRKR 124 (230)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHT---------------CC---------------------SSCCCHHHHHHH
T ss_pred hcceEEEEecchhhCcCccHHHHHhHHHHH---------------hc---------------------cCCCCHHHHHHH
Confidence 499999999999999999998643210 00 001123345667
Q ss_pred HHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEec
Q 008771 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISH 314 (554)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisH 314 (554)
+.++|+.+||+....+++|++|||||||||+|||||+.+|+||||||||++||+.++..+.++|+ +.|+|||+|||
T Consensus 125 ~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTH 204 (230)
T d1l2ta_ 125 ALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204 (230)
T ss_dssp HHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred HHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECC
Confidence 88899999998667899999999999999999999999999999999999999999998888764 46999999999
Q ss_pred CHHHHHhhcceEEEeeCCeee
Q 008771 315 DRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~ 335 (554)
|++++ ++||||++|++|+++
T Consensus 205 d~~~a-~~~drv~~m~~G~Iv 224 (230)
T d1l2ta_ 205 DINVA-RFGERIIYLKDGEVE 224 (230)
T ss_dssp CHHHH-TTSSEEEEEETTEEE
T ss_pred CHHHH-HhCCEEEEEECCEEE
Confidence 99987 699999999999985
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.5e-53 Score=411.07 Aligned_cols=207 Identities=26% Similarity=0.438 Sum_probs=182.5
Q ss_pred cEEEEeEEEEeCCe----eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------
Q 008771 97 GVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------- 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~~----~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------- 161 (554)
+|+++||+|+|+.. .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence 48999999999642 589999999999999999999999999999999999999999999998642
Q ss_pred --eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 008771 162 --KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (554)
Q Consensus 162 --~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (554)
+||||||++.+++.+||.||+..+.. ...++..+.++++
T Consensus 81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~---------------------------------------~~~~~~~~~~~~v 121 (240)
T d3dhwc1 81 RRQIGMIFQHFNLLSSRTVFGNVALPLE---------------------------------------LDNTPKDEVKRRV 121 (240)
T ss_dssp HHHEEECCSSCCCCTTSBHHHHHHHHHH---------------------------------------TTTCCTTHHHHHH
T ss_pred hccccccccccccCCCccHHHHHHHHHH---------------------------------------HcCCCHHHHHHHH
Confidence 49999999999999999999864321 0123455677889
Q ss_pred HHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecC
Q 008771 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHD 315 (554)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd 315 (554)
.++|+.+||. +..+++|++|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+ +.|.|||+||||
T Consensus 122 ~~~L~~vgL~-~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd 200 (240)
T d3dhwc1 122 TELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHE 200 (240)
T ss_dssp HHHHHHHSTT-TTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSC
T ss_pred HHHHHHcCCc-hhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCC
Confidence 9999999997 56799999999999999999999999999999999999999999988888764 359999999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~ 344 (554)
++++..+||||++|++|++ +..|+.++.
T Consensus 201 l~~~~~~~dri~vl~~G~i-v~~G~~~ei 228 (240)
T d3dhwc1 201 MDVVKRICDCVAVISNGEL-IEQDTVSEV 228 (240)
T ss_dssp HHHHHHHCSEEEEEETTEE-EEEEETTTT
T ss_pred HHHHHHhCCEEEEEECCEE-EEECCHHHH
Confidence 9999999999999999998 456665543
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.8e-52 Score=410.82 Aligned_cols=211 Identities=26% Similarity=0.432 Sum_probs=186.2
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------------
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------------- 161 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~--------------- 161 (554)
.|+++||+|+|++..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~ 81 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 81 (258)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred eEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccH
Confidence 38999999999999999999999999999999999999999999999999999999999998542
Q ss_pred --------eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcc
Q 008771 162 --------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (554)
Q Consensus 162 --------~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (554)
+||||||++.+++.+||.+|+..+... .......
T Consensus 82 ~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~--------------------------------------~~~~~~~ 123 (258)
T d1b0ua_ 82 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ--------------------------------------VLGLSKH 123 (258)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH--------------------------------------TTCCCHH
T ss_pred hHHHHHhcceEEEEechhhccchhcchhhhhhHHH--------------------------------------hcCCCHH
Confidence 499999999999999999998643100 0112334
Q ss_pred cHHHHHHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEE
Q 008771 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMV 310 (554)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvI 310 (554)
+..+++.++++.+|+.....+++|.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+ +.|.|||
T Consensus 124 ~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til 203 (258)
T d1b0ua_ 124 DARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 203 (258)
T ss_dssp HHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceE
Confidence 5667889999999998666788899999999999999999999999999999999999999988887764 4689999
Q ss_pred EEecCHHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 311 iisHd~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
+||||++++..+||||++|++|++ +..|+.++.+.
T Consensus 204 ~vtHdl~~~~~~adri~vm~~G~i-v~~g~~~ev~~ 238 (258)
T d1b0ua_ 204 VVTHEMGFARHVSSHVIFLHQGKI-EEEGDPEQVFG 238 (258)
T ss_dssp EECSCHHHHHHHCSEEEEEETTEE-EEEECHHHHHH
T ss_pred EEeCCHHHHHHhCCEEEEEECCEE-EEEcCHHHHHh
Confidence 999999999999999999999998 47788877654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=4.9e-51 Score=398.44 Aligned_cols=210 Identities=21% Similarity=0.319 Sum_probs=178.3
Q ss_pred CccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------eE
Q 008771 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KI 163 (554)
Q Consensus 95 ~~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-----------~i 163 (554)
..+|+++||+|+|++..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. .|
T Consensus 4 d~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi 83 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred ceEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcc
Confidence 3579999999999999999999999999999999999999999999999999999999999998642 49
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+|+||+..+++.+||.||+...... ........+.+..++
T Consensus 84 ~~~~q~~~l~~~ltv~en~~~~~~~----------------------------------------~~~~~~~~~~~~~~~ 123 (240)
T d1ji0a_ 84 ALVPEGRRIFPELTVYENLMMGAYN----------------------------------------RKDKEGIKRDLEWIF 123 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTT----------------------------------------CCCSSHHHHHHHHHH
T ss_pred cccCcccccCCcccHHHHHHHHHHh----------------------------------------cCCHHHHHHHHHHHH
Confidence 9999999999999999998643210 011122333344444
Q ss_pred hhc-CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 008771 244 PEL-GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (554)
Q Consensus 244 ~~l-gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l 319 (554)
..+ ++. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.++ +.|.|||+||||++++
T Consensus 124 ~~~~~l~-~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~ 202 (240)
T d1ji0a_ 124 SLFPRLK-ERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGA 202 (240)
T ss_dssp HHCHHHH-TTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHH
T ss_pred HHhhChH-HHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 444 332 46688999999999999999999999999999999999999999999888764 4699999999999999
Q ss_pred HhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 320 DQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 320 ~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
.++||||++|++|++ ++.|+.++...
T Consensus 203 ~~~~drv~vl~~G~i-v~~g~~~el~~ 228 (240)
T d1ji0a_ 203 LKVAHYGYVLETGQI-VLEGKASELLD 228 (240)
T ss_dssp HHHCSEEEEEETTEE-EEEEEHHHHHT
T ss_pred HHhCCEEEEEECCEE-EEEcCHHHHhc
Confidence 999999999999997 57788877654
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3e-51 Score=403.78 Aligned_cols=222 Identities=21% Similarity=0.253 Sum_probs=184.1
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc-----------eEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~-----------~i~ 164 (554)
.+|+++||+++|++.++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. .|+
T Consensus 3 ~iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~ 82 (254)
T d1g6ha_ 3 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 82 (254)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred ceEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCC
Confidence 469999999999999999999999999999999999999999999999999999999999998643 499
Q ss_pred EEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhh
Q 008771 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (554)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (554)
|+||++.+++.+||.||+..+.... . .. .+..+.............+++.++++
T Consensus 83 ~v~Q~~~~~~~ltv~enl~~~~~~~---------------~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~ 136 (254)
T d1g6ha_ 83 RTFQTPQPLKEMTVLENLLIGEICP---------------G-ES----------PLNSLFYKKWIPKEEEMVEKAFKILE 136 (254)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTST---------------T-SC----------HHHHHHHCSSCCCCHHHHHHHHHHHH
T ss_pred ccCCccccCCCCeeeeeeeehhhhc---------------c-cc----------chhhhhhhcccccHHHHHHHHHHHHH
Confidence 9999999999999999986531000 0 00 00000000001122334567888999
Q ss_pred hcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHHh
Q 008771 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l---~~~g~tvIiisHd~~~l~~ 321 (554)
.+++. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+ ++.|.|||+||||++++.+
T Consensus 137 ~~~l~-~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~ 215 (254)
T d1g6ha_ 137 FLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLN 215 (254)
T ss_dssp HTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGG
T ss_pred hcCcc-hhccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHH
Confidence 99986 4678999999999999999999999999999999999999999998888776 4579999999999999999
Q ss_pred hcceEEEeeCCeeeeccCChhHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~ 345 (554)
+||||++|++|++ ++.|+.++..
T Consensus 216 ~~Drv~vm~~G~i-v~~g~~~e~~ 238 (254)
T d1g6ha_ 216 YIDHLYVMFNGQI-IAEGRGEEEI 238 (254)
T ss_dssp GCSEEEEEETTEE-EEEEESHHHH
T ss_pred hCCEEEEEeCCEE-EEEecHHHHh
Confidence 9999999999998 4667766544
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.4e-50 Score=392.72 Aligned_cols=209 Identities=26% Similarity=0.375 Sum_probs=183.5
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC---------ceEEEEe
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS 167 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~---------~~i~~v~ 167 (554)
.|.++||+|+|+++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ ..+||+|
T Consensus 2 aI~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vp 81 (238)
T d1vpla_ 2 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP 81 (238)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred CEEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEee
Confidence 4899999999999999999999999999999999999999999999999999999999999854 3599999
Q ss_pred cccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcC
Q 008771 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (554)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (554)
|++.+++++|+.||+..... .......+....++.+++.++
T Consensus 82 q~~~~~~~ltv~e~l~~~~~---------------------------------------~~~~~~~~~~~~~~~~l~~~~ 122 (238)
T d1vpla_ 82 EEAGAYRNMQGIEYLRFVAG---------------------------------------FYASSSSEIEEMVERATEIAG 122 (238)
T ss_dssp TTCCCCTTSBHHHHHHHHHH---------------------------------------HHCCCHHHHHHHHHHHHHHHC
T ss_pred eccccCCCccHHHHHHHHHH---------------------------------------hcCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999753210 011233445667888899999
Q ss_pred CCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcc
Q 008771 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~~~d 324 (554)
+. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++++ +.|+|||++|||++++..+||
T Consensus 123 l~-~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~d 201 (238)
T d1vpla_ 123 LG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCD 201 (238)
T ss_dssp CG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCS
T ss_pred CH-HHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 85 56788999999999999999999999999999999999999999998888764 469999999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHHHH
Q 008771 325 KIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||++|++|++ .+.|+.++...
T Consensus 202 rv~vl~~G~i-v~~g~~~el~~ 222 (238)
T d1vpla_ 202 RIALIHNGTI-VETGTVEELKE 222 (238)
T ss_dssp EEEEEETTEE-EEEEEHHHHHH
T ss_pred EEEEEECCEE-EEEcCHHHHHh
Confidence 9999999998 46788776654
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.8e-49 Score=383.58 Aligned_cols=203 Identities=28% Similarity=0.385 Sum_probs=177.3
Q ss_pred cEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC--------ceEEEEec
Q 008771 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (554)
Q Consensus 97 ~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (554)
.|++ ++.++|++..+ ||||++. +|+++|+||||||||||+|+|+|+++|++|+|.++|.+ .+||||||
T Consensus 2 ~l~v-~~~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q 77 (240)
T d2onka1 2 FLKV-RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp CEEE-EEEEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred EEEE-EEEEEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeecc
Confidence 3677 67899998765 7999995 68999999999999999999999999999999999853 36999999
Q ss_pred ccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCC
Q 008771 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (554)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (554)
++.+++.+||.||+..++. .....+.++++.++++.+|+
T Consensus 78 ~~~l~~~ltV~enl~~~l~-----------------------------------------~~~~~~~~~~v~~~l~~~gl 116 (240)
T d2onka1 78 DYALFPHLSVYRNIAYGLR-----------------------------------------NVERVERDRRVREMAEKLGI 116 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCT-----------------------------------------TSCHHHHHHHHHHHHHTTTC
T ss_pred chhhcccchhhHhhhhhhc-----------------------------------------ccCHHHHHHHHHHHHHhcCc
Confidence 9999999999999875421 11223456778999999999
Q ss_pred CccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcc
Q 008771 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (554)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d 324 (554)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.++ +.|.|||+||||++++.++||
T Consensus 117 ~-~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~ad 195 (240)
T d2onka1 117 A-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD 195 (240)
T ss_dssp T-TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCS
T ss_pred H-hhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCC
Confidence 6 57899999999999999999999999999999999999999999998888764 358999999999999999999
Q ss_pred eEEEeeCCeeeeccCChhHHHH
Q 008771 325 KIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 325 ~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
||++|++|++ ++.|+..+.+.
T Consensus 196 ri~vm~~G~i-i~~G~~~el~~ 216 (240)
T d2onka1 196 EVAVMLNGRI-VEKGKLKELFS 216 (240)
T ss_dssp EEEEEETTEE-EEEECHHHHHH
T ss_pred EEEEEECCEE-EEEecHHHHhc
Confidence 9999999998 56788777654
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.8e-49 Score=384.89 Aligned_cols=216 Identities=22% Similarity=0.387 Sum_probs=170.1
Q ss_pred CCccEEEEeEEEEeCCe---eeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc---------
Q 008771 94 ISSGVKLENISKSYKGV---TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------- 161 (554)
Q Consensus 94 ~~~~i~~~~ls~~y~~~---~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~--------- 161 (554)
..+.|+++||+|+|+++ .+|+||||+|++||++|||||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred ccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHH
Confidence 34569999999999753 599999999999999999999999999999999999999999999998643
Q ss_pred -eEEEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 008771 162 -KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (554)
Q Consensus 162 -~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (554)
.|+||+|++.++ ..||++|+..+....... .... . . .......
T Consensus 88 ~~i~~v~Q~~~lf-~~tv~eni~~g~~~~~~~-----------------~~~~----~-------~-------~~~~~~~ 131 (251)
T d1jj7a_ 88 RQVAAVGQEPQVF-GRSLQENIAYGLTQKPTM-----------------EEIT----A-------A-------AVKSGAH 131 (251)
T ss_dssp HHEEEECSSCCCC-SSBHHHHHHCSCSSCCCH-----------------HHHH----H-------H-------HHHHTCH
T ss_pred HHhhhcccccccc-CcchhhhhhhhhcccchH-----------------HHHH----H-------H-------HHHHHHH
Confidence 599999999875 579999997542110000 0000 0 0 0000111
Q ss_pred HHhhhc--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc----CCCeEEEEec
Q 008771 241 KLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISH 314 (554)
Q Consensus 241 ~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~g~tvIiisH 314 (554)
..+..+ |+. ...++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|.+ .++|+|+|||
T Consensus 132 ~~i~~l~~g~~-~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH 210 (251)
T d1jj7a_ 132 SFISGLPQGYD-TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQ 210 (251)
T ss_dssp HHHHTSTTGGG-CBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECS
T ss_pred HHHHhccccch-hhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeC
Confidence 122222 232 234566789999999999999999999999999999999999999999888743 4899999999
Q ss_pred CHHHHHhhcceEEEeeCCeeeeccCChhHHHHHH
Q 008771 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEK 348 (554)
Q Consensus 315 d~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~~~ 348 (554)
|++.+. .||||++|++|++ +..|++++.+...
T Consensus 211 ~l~~~~-~aDrI~vl~~G~i-v~~Gt~~eLl~~~ 242 (251)
T d1jj7a_ 211 HLSLVE-QADHILFLEGGAI-REGGTHQQLMEKK 242 (251)
T ss_dssp CHHHHH-TCSEEEEEETTEE-EEEECHHHHHHHT
T ss_pred CHHHHH-hCCEEEEEECCEE-EEECCHHHHHhCC
Confidence 999885 5999999999998 5679999887653
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-48 Score=379.67 Aligned_cols=211 Identities=24% Similarity=0.420 Sum_probs=166.8
Q ss_pred EEEEeEEEEeC--CeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEE
Q 008771 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (554)
Q Consensus 98 i~~~~ls~~y~--~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~ 165 (554)
|+++||+|+|+ +.++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.+. .|+|
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence 79999999994 45799999999999999999999999999999999999999999999998653 5999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
|||++.+ +..||++|+....... . .+.+.... . ...+.+.+..
T Consensus 82 v~Q~~~l-f~~Ti~eNi~~~~~~~-~----~~~~~~~~---------------------~----------~~~~~~~i~~ 124 (241)
T d2pmka1 82 VLQDNVL-LNRSIIDNISLANPGM-S----VEKVIYAA---------------------K----------LAGAHDFISE 124 (241)
T ss_dssp ECSSCCC-TTSBHHHHHCTTSTTC-C----HHHHHHHH---------------------H----------HHTCHHHHTT
T ss_pred Eeccccc-CCccccccccccCccc-c----HHHHHHHH---------------------H----------HHhhHHHHHh
Confidence 9999977 5679999996432100 0 00000000 0 0001111222
Q ss_pred c--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 008771 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~ 321 (554)
+ |+. ......+..|||||||||+|||||+.+|+||||||||++||+.+...+.+.|++ .++|+|+||||++.+.
T Consensus 125 ~~~~~~-t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~- 202 (241)
T d2pmka1 125 LREGYN-TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK- 202 (241)
T ss_dssp STTGGG-SBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-
T ss_pred hhcchh-hhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH-
Confidence 1 221 234556789999999999999999999999999999999999999999888754 4899999999999885
Q ss_pred hcceEEEeeCCeeeeccCChhHHHHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYVLEK 348 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~~~~ 348 (554)
.||+|++|++|++ +..|++++.+.+.
T Consensus 203 ~~D~i~vl~~G~I-v~~G~~~ell~~~ 228 (241)
T d2pmka1 203 NADRIIVMEKGKI-VEQGKHKELLSEP 228 (241)
T ss_dssp TSSEEEEEETTEE-EEEECHHHHHHST
T ss_pred hCCEEEEEECCEE-EEECCHHHHHhCC
Confidence 6999999999998 5779998887653
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=3.9e-49 Score=385.33 Aligned_cols=212 Identities=20% Similarity=0.347 Sum_probs=163.2
Q ss_pred cEEEEeEEEEeCC-eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC----------ceEEE
Q 008771 97 GVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (554)
Q Consensus 97 ~i~~~~ls~~y~~-~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~----------~~i~~ 165 (554)
+|+++||+|+|++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ .+|+|
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence 5899999999964 579999999999999999999999999999999999999999999999853 25999
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
|||++.++. .||++|+....... ..+ ..+.. ..... . ....+..
T Consensus 81 v~Q~~~lf~-~ti~eNi~~~~~~~-----------------~~~-~~~~~-------~~~~~---~-------~~~~~~~ 124 (242)
T d1mv5a_ 81 VSQDSAIMA-GTIRENLTYGLEGD-----------------YTD-EDLWQ-------VLDLA---F-------ARSFVEN 124 (242)
T ss_dssp ECCSSCCCC-EEHHHHTTSCTTSC-----------------SCH-HHHHH-------HHHHH---T-------CTTTTTS
T ss_pred EccccccCC-cchhhheecccccc-----------------cch-hhHHH-------HHHHH---H-------hhhhhcc
Confidence 999998754 59999985432100 000 00000 00000 0 0000001
Q ss_pred c--CCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 008771 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~ 321 (554)
+ ++. ........+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|++ .++|+|+||||++.+.
T Consensus 125 ~~~~~~-~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~- 202 (242)
T d1mv5a_ 125 MPDQLN-TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV- 202 (242)
T ss_dssp STTGGG-CEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-
T ss_pred Cccccc-ccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-
Confidence 0 111 122334568999999999999999999999999999999999988877777653 4899999999999996
Q ss_pred hcceEEEeeCCeeeeccCChhHHHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
.||+|++|++|++ +..|++++.+..
T Consensus 203 ~~D~i~vl~~G~i-v~~G~~~eLl~~ 227 (242)
T d1mv5a_ 203 DADKIYFIEKGQI-TGSGKHNELVAT 227 (242)
T ss_dssp HCSEEEEEETTEE-CCCSCHHHHHHH
T ss_pred hCCEEEEEECCEE-EEECCHHHHHhC
Confidence 5999999999997 688999988764
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.6e-47 Score=376.28 Aligned_cols=215 Identities=24% Similarity=0.408 Sum_probs=167.2
Q ss_pred ccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eE
Q 008771 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (554)
Q Consensus 96 ~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i 163 (554)
+.|+++||+|+|++ .++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 12 g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 91 (253)
T d3b60a1 12 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 91 (253)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred eEEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheE
Confidence 45999999999975 3699999999999999999999999999999999999999999999998642 59
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+||||++.+ +..|+.+|+..+...... .+.+... +.. ..+...+..+-
T Consensus 92 ~~v~Q~~~l-~~~ti~~n~~~~~~~~~~----~~~i~~a------------------------~~~---~~l~~~i~~l~ 139 (253)
T d3b60a1 92 ALVSQNVHL-FNDTVANNIAYARTEEYS----REQIEEA------------------------ARM---AYAMDFINKMD 139 (253)
T ss_dssp EEECSSCCC-CSSBHHHHHHTTTTSCCC----HHHHHHH------------------------HHT---TTCHHHHHHST
T ss_pred EEEeecccc-CCcchhhhhhhcCcccCC----HHHHHHH------------------------HHH---HhHHHHHHhcc
Confidence 999999977 466899997643110000 0000000 000 01111111111
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~ 321 (554)
. |+.. .....+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|++ .++|+|+||||++.+.
T Consensus 140 ~--gl~t-~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~- 215 (253)
T d3b60a1 140 N--GLDT-IIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE- 215 (253)
T ss_dssp T--GGGS-BCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-
T ss_pred c--cchh-hhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-
Confidence 1 3322 33556789999999999999999999999999999999999999999888753 4899999999999885
Q ss_pred hcceEEEeeCCeeeeccCChhHHHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
.||+|++|++|++ +..|++++.+..
T Consensus 216 ~~D~v~vl~~G~I-v~~G~~~eLl~~ 240 (253)
T d3b60a1 216 QADEIVVVEDGII-VERGTHSELLAQ 240 (253)
T ss_dssp TCSEEEEEETTEE-EEEECHHHHHHH
T ss_pred hCCEEEEEECCEE-EEECCHHHHHhC
Confidence 6999999999998 577899887764
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.8e-47 Score=375.39 Aligned_cols=214 Identities=26% Similarity=0.433 Sum_probs=166.7
Q ss_pred ccEEEEeEEEEeCC--eeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eE
Q 008771 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (554)
Q Consensus 96 ~~i~~~~ls~~y~~--~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i 163 (554)
+.|+++||+|+|++ .++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 15 g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 94 (255)
T d2hyda1 15 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 94 (255)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhhee
Confidence 45999999999965 4699999999999999999999999999999999999999999999998643 59
Q ss_pred EEEecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHh
Q 008771 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (554)
Q Consensus 164 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (554)
+||+|++.+ +..||+||+..+..... .+.+...+ +.. .+...+..+-
T Consensus 95 ~~v~Q~~~l-f~~Ti~eNi~~g~~~~~-----~~~~~~al------------------------~~~---~l~~~i~~lp 141 (255)
T d2hyda1 95 GLVQQDNIL-FSDTVKENILLGRPTAT-----DEEVVEAA------------------------KMA---NAHDFIMNLP 141 (255)
T ss_dssp EEECSSCCC-CSSBHHHHHGGGCSSCC-----HHHHHHHH------------------------HHT---TCHHHHHTST
T ss_pred eeeeccccC-CCCCHHHHHhccCcCCC-----HHHHHHHH------------------------HHh---CCHHHHHhcc
Confidence 999999977 46799999964321000 00000000 000 0111111111
Q ss_pred hhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 008771 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (554)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~ 321 (554)
. |++. .......+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|.+ .++|+|+||||++.+.
T Consensus 142 ~--gl~t-~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~- 217 (255)
T d2hyda1 142 Q--GYDT-EVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT- 217 (255)
T ss_dssp T--GGGC-BCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-
T ss_pred c--cccc-hhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-
Confidence 1 2221 22334578999999999999999999999999999999999999999988753 4889999999999885
Q ss_pred hcceEEEeeCCeeeeccCChhHHHHH
Q 008771 322 LCTKIVETEMGVSRTYEGNYSQYVLE 347 (554)
Q Consensus 322 ~~d~i~~l~~g~~~~~~G~~~~~~~~ 347 (554)
.||+|++|++|++ ...|++++.+..
T Consensus 218 ~~D~ii~l~~G~i-v~~G~~~eLl~~ 242 (255)
T d2hyda1 218 HADKIVVIENGHI-VETGTHRELIAK 242 (255)
T ss_dssp TCSEEEEEETTEE-EEEECHHHHHHT
T ss_pred hCCEEEEEECCEE-EEECCHHHHHhC
Confidence 6999999999997 567999887764
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-43 Score=344.21 Aligned_cols=200 Identities=28% Similarity=0.328 Sum_probs=168.4
Q ss_pred ccEEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCc----------eEEE
Q 008771 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (554)
Q Consensus 96 ~~i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~----------~i~~ 165 (554)
.+|+++||+++| +|+||||+|++||++||+||||||||||+++|+|+. |++|+|.++|.+. ..+|
T Consensus 2 ~il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~ 76 (231)
T d1l7vc_ 2 IVMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAY 76 (231)
T ss_dssp EEEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEE
T ss_pred eEEEEECcccCc----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhcee
Confidence 358999998665 699999999999999999999999999999999976 6899999998753 4899
Q ss_pred EecccccccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhh
Q 008771 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (554)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (554)
++|+....+..++.+++.... ......+.+.+++..
T Consensus 77 ~~~~~~~~~~~~v~~~~~~~~--------------------------------------------~~~~~~~~~~~~~~~ 112 (231)
T d1l7vc_ 77 LSQQQTPPFATPVWHYLTLHQ--------------------------------------------HDKTRTELLNDVAGA 112 (231)
T ss_dssp ECSCCCCCSSCBHHHHHHHHC--------------------------------------------SCTTCHHHHHHHHHH
T ss_pred eeccccCCccccHHHHhhhcc--------------------------------------------chhhHHHHHHHHHHh
Confidence 999987767778877653210 111223456777888
Q ss_pred cCCCccccCCCCCCCChhHHHHHHHHHHHcc-------CCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecC
Q 008771 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQ-------DPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHD 315 (554)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~-------~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd 315 (554)
+++. +..++++.+|||||||||+|||||++ +|+||||||||++||+.+...+.++++ +.|.|||+||||
T Consensus 113 ~~l~-~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHd 191 (231)
T d1l7vc_ 113 LALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHD 191 (231)
T ss_dssp TTCT-TTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred cCCH-hHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 8886 45688999999999999999999997 779999999999999999888877664 569999999999
Q ss_pred HHHHHhhcceEEEeeCCeeeeccCChhHHHH
Q 008771 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (554)
Q Consensus 316 ~~~l~~~~d~i~~l~~g~~~~~~G~~~~~~~ 346 (554)
++++.++||||++|++|++ ++.|+..+...
T Consensus 192 l~~~~~~~dri~vl~~G~i-v~~G~~~ev~~ 221 (231)
T d1l7vc_ 192 LNHTLRHAHRAWLLKGGKM-LASGRREEVLT 221 (231)
T ss_dssp HHHHHHHCSBCCBEETTEE-CCCSBHHHHSC
T ss_pred HHHHHHHCCEEEEEECCEE-EEECCHHHHhC
Confidence 9999999999999999997 67788776643
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.1e-43 Score=349.90 Aligned_cols=205 Identities=25% Similarity=0.369 Sum_probs=156.1
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccccCcc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~t 177 (554)
|+++|++ |.++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|+|+||++.++ ..|
T Consensus 39 i~~~~~~--~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g---~i~~v~Q~~~l~-~~t 112 (281)
T d1r0wa_ 39 VSFSHLC--LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG---RVSFCSQFSWIM-PGT 112 (281)
T ss_dssp -CHHHHH--HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS---CEEEECSSCCCC-SEE
T ss_pred EEEEEcC--CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC---EEEEEecccccc-Cce
Confidence 5555554 4678999999999999999999999999999999999999999999999987 599999998875 469
Q ss_pred HHHHHHHhhHH-HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccccCCC
Q 008771 178 VREEFMSAFKE-EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (554)
Q Consensus 178 v~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (554)
|++|+..+... .... ..+ + ... .....+..+.... .....+.
T Consensus 113 v~eni~~~~~~~~~~~----~~~---~------------------------~~~---~~~~~i~~l~~~~---~~~~~~~ 155 (281)
T d1r0wa_ 113 IKENIIFGVSYDEYRY----KSV---V------------------------KAC---QLQQDITKFAEQD---NTVLGEG 155 (281)
T ss_dssp HHHHHTTTSCCCHHHH----HHH---H------------------------HHT---TCHHHHTTSTTGG---GCEECTT
T ss_pred eeccccccccccchHH----HHH---H------------------------HHH---HhHHHHHhchhhh---hhhhhhh
Confidence 99998643210 0000 000 0 000 0001111111111 1233455
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHH-Hcc--CCCeEEEEecCHHHHHhhcceEEEeeCCe
Q 008771 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (554)
Q Consensus 257 ~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~~--~g~tvIiisHd~~~l~~~~d~i~~l~~g~ 333 (554)
..+|||||||||+|||||+.+|+||||||||++||+.+...+.+. +.. .++|+|+|||+++.+. .||||++|++|+
T Consensus 156 ~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~-~aDrI~vl~~G~ 234 (281)
T d1r0wa_ 156 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLR-KADKILILHQGS 234 (281)
T ss_dssp CTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHH-TCSEEEEEETTE
T ss_pred ccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHH-hCCEEEEEECCE
Confidence 678999999999999999999999999999999999998888765 332 4889999999999885 699999999999
Q ss_pred eeeccCChhHHHHH
Q 008771 334 SRTYEGNYSQYVLE 347 (554)
Q Consensus 334 ~~~~~G~~~~~~~~ 347 (554)
+ .+.|+++++...
T Consensus 235 i-~~~Gt~~eL~~~ 247 (281)
T d1r0wa_ 235 S-YFYGTFSELQSL 247 (281)
T ss_dssp E-EEEECHHHHHHH
T ss_pred E-EEECCHHHHhcc
Confidence 7 677999987654
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.1e-42 Score=330.79 Aligned_cols=186 Identities=21% Similarity=0.316 Sum_probs=150.4
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCC-----ceEEEEeccccc
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEFEV 172 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~-----~~i~~v~Q~~~~ 172 (554)
|+++||+++|+ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ .+++|+||+..+
T Consensus 3 lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~ 81 (200)
T d1sgwa_ 3 LEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIV 81 (200)
T ss_dssp EEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCC
T ss_pred EEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecccC
Confidence 89999999995 579999999999999999999999999999999999999999999999854 269999999988
Q ss_pred ccCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHhhhcCCCccc
Q 008771 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (554)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 252 (554)
+...|+.+++..... ..+.+..+..+.+.++.+++..
T Consensus 82 ~~~~t~~~~l~~~~~-----------------------------------------~~~~~~~~~~~~~~l~~~~~~~-- 118 (200)
T d1sgwa_ 82 PRKISVEDYLKAVAS-----------------------------------------LYGVKVNKNEIMDALESVEVLD-- 118 (200)
T ss_dssp CTTSBHHHHHHHHHH-----------------------------------------HTTCCCCHHHHHHHHHHTTCCC--
T ss_pred CCCcCHHHHHHHHHH-----------------------------------------hcCCccCHHHHHHHHHHcCCcc--
Confidence 888899988642110 0011112334556667777642
Q ss_pred cCCCCCCCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcceEEE
Q 008771 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVE 328 (554)
Q Consensus 253 ~~~~~~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~g~tvIiisHd~~~l~~~~d~i~~ 328 (554)
.++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+. +.+.+||.++|++ .+||++.+
T Consensus 119 ~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~ 194 (200)
T d1sgwa_ 119 LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNEN 194 (200)
T ss_dssp TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEE
T ss_pred cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhh
Confidence 356788999999999999999999999999999999999998887776553 3455666666664 47999988
Q ss_pred eeC
Q 008771 329 TEM 331 (554)
Q Consensus 329 l~~ 331 (554)
|+.
T Consensus 195 l~~ 197 (200)
T d1sgwa_ 195 LHK 197 (200)
T ss_dssp GGG
T ss_pred eee
Confidence 853
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.3e-29 Score=243.51 Aligned_cols=127 Identities=29% Similarity=0.445 Sum_probs=81.3
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEecc
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q~ 496 (554)
|+++|+++.|++..+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .++|++|+
T Consensus 1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~ 80 (232)
T d2awna2 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQS 80 (232)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSS
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccc
Confidence 6899999999999999999999999999999999999999999999999999999999999766 37999999
Q ss_pred cccCCCCCCCHHHHHHhhccc------CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 497 QAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+ .+++.+||+||+..+... .....+.++|+.+++. +..+++|..|||||||||+|
T Consensus 81 ~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LSGGqkQRvai 141 (232)
T d2awna2 81 Y--ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAI 141 (232)
T ss_dssp C--CC---------------------CHHHHHHHHHHHHC----------------------CH
T ss_pred c--ccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCh-hhhhCChhhCCHHHHHHHHH
Confidence 6 588999999999865331 1134588999999996 57899999999999999985
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.96 E-value=2.5e-29 Score=242.37 Aligned_cols=127 Identities=30% Similarity=0.476 Sum_probs=109.0
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEecc
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q~ 496 (554)
|+++|+++.|++..++++|||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|+
T Consensus 7 I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~ 86 (239)
T d1v43a3 7 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQS 86 (239)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC-
T ss_pred EEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeec
Confidence 8999999999999999999999999999999999999999999999999999999999999876 27999998
Q ss_pred cccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 497 QAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+ .+++..||.||+..... ... ...+..+|+.+++. +..+++|..|||||||||+|
T Consensus 87 ~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGq~QRvai 147 (239)
T d1v43a3 87 Y--AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLSGGQRQRVAV 147 (239)
T ss_dssp -------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCCSSCHHHHHH
T ss_pred h--hhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHH
Confidence 6 58899999999987643 222 24577899999995 57899999999999999975
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.96 E-value=3.5e-29 Score=241.76 Aligned_cols=128 Identities=26% Similarity=0.407 Sum_probs=113.6
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------------e
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------------L 489 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------------~ 489 (554)
.|+++|+++.|++..+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .
T Consensus 3 ~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ 82 (240)
T d1g2912 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred cEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccccccc
Confidence 58999999999998899999999999999999999999999999999999999999999998765 3
Q ss_pred EEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 490 PNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++|++ .+++.+||.||+..+.. ... ...+..+|+.+++. +..+++|+.|||||||||+|
T Consensus 83 ig~v~Q~~--~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~-~~~~~~p~~LSGGqkQRv~I 150 (240)
T d1g2912 83 IAMVFQSY--ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQRVAL 150 (240)
T ss_dssp EEEECSCC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-GGTTCCGGGSCHHHHHHHHH
T ss_pred ceecccch--hhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHH
Confidence 68999996 58899999999987632 122 24588899999995 57899999999999999975
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.95 E-value=9.8e-29 Score=236.72 Aligned_cols=127 Identities=26% Similarity=0.399 Sum_probs=113.1
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEec
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q 495 (554)
+|+++|++++|++ .++++|||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 1 mi~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q 79 (229)
T d3d31a2 1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (229)
T ss_dssp CEEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeecc
Confidence 4899999999987 489999999999999999999999999999999999999999999999877 3689999
Q ss_pred ccccCCCCCCCHHHHHHhhcc---cCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAE---DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~---~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++.+||.||+..+.. ......+.+++..+++. +..+++|..|||||||||+|
T Consensus 80 ~~--~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGG~~QRvai 138 (229)
T d3d31a2 80 NY--SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVAL 138 (229)
T ss_dssp TC--CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHH
T ss_pred cc--ccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcch-hhHhCChhhCCHHHhcchhh
Confidence 96 58899999999976532 23456789999999995 57899999999999999975
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.95 E-value=8.1e-29 Score=238.98 Aligned_cols=128 Identities=24% Similarity=0.388 Sum_probs=112.8
Q ss_pred eEEEeeeeEec--CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------
Q 008771 424 VVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y--~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~------------- 488 (554)
.|+++|+++.| ++..++++|||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 48899999999 456789999999999999999999999999999999999999999999999766
Q ss_pred eEEEEecccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++.+||+|||..+.. ... ...+.++|+.+++. +..+++|+.|||||||||+|
T Consensus 83 ~ig~vfQ~~--~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~p~~LSGGqkQRvai 151 (242)
T d1oxxk2 83 KIGMVFQTW--ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQRVAL 151 (242)
T ss_dssp CEEEEETTS--CCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHH
T ss_pred cceEEeccc--cccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChH-hhhhCChhhCCHHHHhHHHH
Confidence 378999996 48899999999987643 222 24588999999995 67899999999999999975
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.95 E-value=1.1e-28 Score=237.06 Aligned_cols=129 Identities=28% Similarity=0.365 Sum_probs=111.3
Q ss_pred eEEEeeeeEecCCc----cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008771 424 VVTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~~----~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------- 488 (554)
+|+++|+++.|+.. .+++++||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence 47999999999632 379999999999999999999999999999999999999999999999766
Q ss_pred ---eEEEEecccccCCCCCCCHHHHHHhhcc-----cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 ---LPNYFEQNQAEALDLDKTVLETVAEAAE-----DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 ---~~~y~~Q~~~~~l~~~~tv~e~l~~~~~-----~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.||+..+.. ... .+.+.++|+.+++.....+++|..|||||||||+|
T Consensus 81 r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaI 156 (230)
T d1l2ta_ 81 RRDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAI 156 (230)
T ss_dssp HHHHEEEECTTC--CCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHH
T ss_pred hcceEEEEecch--hhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHH
Confidence 279999996 58899999999876531 122 24578899999997666789999999999999975
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=2e-28 Score=236.38 Aligned_cols=128 Identities=27% Similarity=0.366 Sum_probs=111.7
Q ss_pred eEEEeeeeEecCCc----cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008771 424 VVTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (554)
Q Consensus 424 ~l~~~~l~~~y~~~----~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------- 488 (554)
+|+++|+++.|+.. .++++|||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence 47999999999642 479999999999999999999999999999999999999999999999876
Q ss_pred --eEEEEecccccCCCCCCCHHHHHHhhcc--cC--C--HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 --LPNYFEQNQAEALDLDKTVLETVAEAAE--DW--R--IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 --~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~--~--~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.||+..+.. .+ . .+.+.++|+.+|+. +..+++|..|||||||||+|
T Consensus 81 rr~ig~VfQ~~--~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~-~~~~~~~~~LSGG~~QRvai 151 (240)
T d3dhwc1 81 RRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAI 151 (240)
T ss_dssp HHHEEECCSSC--CCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTT-TTTSSCBSCCCHHHHHHHHH
T ss_pred hcccccccccc--ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHH
Confidence 279999996 47789999999987532 11 1 35688999999996 57899999999999999975
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.95 E-value=4e-28 Score=237.74 Aligned_cols=128 Identities=27% Similarity=0.339 Sum_probs=112.9
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------------
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------------- 488 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------------- 488 (554)
|+++|+++.|++..++++|||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~ 82 (258)
T d1b0ua_ 3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKN 82 (258)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHH
T ss_pred EEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHh
Confidence 8999999999998999999999999999999999999999999999999999999999999876
Q ss_pred -------eEEEEecccccCCCCCCCHHHHHHhhc---ccCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 489 -------LPNYFEQNQAEALDLDKTVLETVAEAA---EDWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 489 -------~~~y~~Q~~~~~l~~~~tv~e~l~~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++|++|++ .+++..||.+|+..+. .... ...+.++|..+++.....++.|.+|||||||||+|
T Consensus 83 ~~~~~r~~ig~vfQ~~--~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~i 160 (258)
T d1b0ua_ 83 QLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 160 (258)
T ss_dssp HHHHHHHHEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred HHHHHhcceEEEEech--hhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHH
Confidence 268999996 4789999999988652 1222 24578899999998666678899999999999975
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.94 E-value=3.5e-27 Score=228.88 Aligned_cols=131 Identities=23% Similarity=0.373 Sum_probs=110.1
Q ss_pred CCceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-----------
Q 008771 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489 (554)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~----------- 489 (554)
.+.+|+++|+++.|++..+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 sd~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred cceEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence 367899999999999989999999999999999999999999999999999999999999999998762
Q ss_pred EEEEecccccCCCCCCCHHHHHHhhccc---CC--HHHHHHHHhhC-CCChhhhccccCcCChhhhhcccC
Q 008771 490 PNYFEQNQAEALDLDKTVLETVAEAAED---WR--IDDIKGLLGRC-NFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~~---~~--~~~~~~~L~~~-~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++|+. .++++.||.||+...... .. ...+..++..+ ++ .+..++++.+|||||||||+|
T Consensus 83 i~~~~q~~--~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~LSGG~~Qrv~i 150 (240)
T d1ji0a_ 83 IALVPEGR--RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRL-KERLKQLGGTLSGGEQQMLAI 150 (240)
T ss_dssp EEEECSSC--CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHH-HTTTTSBSSSSCHHHHHHHHH
T ss_pred ccccCccc--ccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCh-HHHHhCchhhCCHHHHHHHHH
Confidence 56888874 588999999998765431 11 22345566666 34 456889999999999999974
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.93 E-value=6.6e-27 Score=229.14 Aligned_cols=128 Identities=25% Similarity=0.361 Sum_probs=111.2
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-----------EEE
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PNY 492 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~-----------~~y 492 (554)
+|+++|+++.|++..++++|||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ++|
T Consensus 4 iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~ 83 (254)
T d1g6ha_ 4 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR 83 (254)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEE
T ss_pred eEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCc
Confidence 689999999999989999999999999999999999999999999999999999999999998762 679
Q ss_pred EecccccCCCCCCCHHHHHHhhcc-------------c---C---CHHHHHHHHhhCCCChhhhccccCcCChhhhhccc
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAE-------------D---W---RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILL 553 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~-------------~---~---~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~ 553 (554)
++|++ .++++.||.||+..+.. . . ....+..+|+.+++. ...++++..|||||||||+
T Consensus 84 v~Q~~--~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~Qrv~ 160 (254)
T d1g6ha_ 84 TFQTP--QPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMKLVE 160 (254)
T ss_dssp CCCCC--GGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHH
T ss_pred cCCcc--ccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcc-hhccCchhhCCcHHHHHHH
Confidence 99987 36789999999975421 0 1 123577789999985 4678999999999999987
Q ss_pred C
Q 008771 554 Y 554 (554)
Q Consensus 554 l 554 (554)
|
T Consensus 161 i 161 (254)
T d1g6ha_ 161 I 161 (254)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=2.4e-26 Score=222.82 Aligned_cols=127 Identities=26% Similarity=0.486 Sum_probs=104.3
Q ss_pred EEEeeeeEecC--CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEEE
Q 008771 425 VTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNY 492 (554)
Q Consensus 425 l~~~~l~~~y~--~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~y 492 (554)
|+++||+|+|+ .+.+|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence 68999999995 35699999999999999999999999999999999999999999999999876 3789
Q ss_pred EecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCC----------hhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK----------ADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~----------~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++ .+ ++.||+||+....+....+++...+...++. ...++..+..|||||||||+|
T Consensus 82 v~Q~~--~l-f~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRval 150 (241)
T d2pmka1 82 VLQDN--VL-LNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAI 150 (241)
T ss_dssp ECSSC--CC-TTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHH
T ss_pred Eeccc--cc-CCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhh
Confidence 99986 24 5679999998876656665555554444321 113456778999999999975
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=4.6e-26 Score=220.56 Aligned_cols=127 Identities=27% Similarity=0.340 Sum_probs=110.5
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eEEEEec
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~---------~~~y~~Q 495 (554)
|+++|+++.|+++.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 3 I~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq 82 (238)
T d1vpla_ 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPE 82 (238)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECT
T ss_pred EEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeee
Confidence 7899999999999999999999999999999999999999999999999999999999999765 3689999
Q ss_pred ccccCCCCCCCHHHHHHhhcc--cCC----HHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.. .+++..|+.||+..... ... .+.++.++..+++. +..++++..|||||||||+|
T Consensus 83 ~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lSgG~~qrv~i 144 (238)
T d1vpla_ 83 EA--GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLI 144 (238)
T ss_dssp TC--CCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-GGGGSBGGGCCHHHHHHHHH
T ss_pred cc--ccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHhhhhhhCCHHHHHHHHH
Confidence 74 67889999999865432 112 23467788889984 57899999999999999874
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.92 E-value=1.1e-25 Score=212.87 Aligned_cols=126 Identities=26% Similarity=0.395 Sum_probs=107.6
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eEEEEecccc
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQNQA 498 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-----~~~y~~Q~~~ 498 (554)
.|+++|+++.|+ +++|+++||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++ .++|++|+.
T Consensus 2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~- 79 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI- 79 (200)
T ss_dssp EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC-
T ss_pred eEEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecc-
Confidence 489999999996 5799999999999999999999999999999999999999999999999766 367888874
Q ss_pred cCCCCCCCHHHHHHhhc----ccCCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 499 EALDLDKTVLETVAEAA----EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 499 ~~l~~~~tv~e~l~~~~----~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
.++...|+.+++.... ......++...+..+++.. +.+++.+|||||||||+|
T Consensus 80 -~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~LSgG~~qrv~i 136 (200)
T d1sgwa_ 80 -IVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--LKKKLGELSQGTIRRVQL 136 (200)
T ss_dssp -CCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--TTSBGGGSCHHHHHHHHH
T ss_pred -cCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc--cccccCcCCCcHHHHHHH
Confidence 4667789999986542 2345677888899888742 567899999999999864
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.92 E-value=7.8e-26 Score=220.79 Aligned_cols=128 Identities=28% Similarity=0.408 Sum_probs=108.2
Q ss_pred eEEEeeeeEecCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEE
Q 008771 424 VVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPN 491 (554)
Q Consensus 424 ~l~~~~l~~~y~~--~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~ 491 (554)
-|+++||+|+|++ .++|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 95 (255)
T d2hyda1 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG 95 (255)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEE
T ss_pred EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheee
Confidence 3999999999975 4699999999999999999999999999999999999999999999999876 368
Q ss_pred EEecccccCCCCCCCHHHHHHhhcccCCHHHHHHHHhhCCCChh----------hhccccCcCChhhhhcccC
Q 008771 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSGGek~Rl~l 554 (554)
|++|++ .+ ++.||+|||..+.+....+++...+...++... .+...+..|||||||||+|
T Consensus 96 ~v~Q~~--~l-f~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~i 165 (255)
T d2hyda1 96 LVQQDN--IL-FSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSI 165 (255)
T ss_dssp EECSSC--CC-CSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHH
T ss_pred eeeccc--cC-CCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHH
Confidence 999985 34 567999999887766677778888877775321 2334567899999999975
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.92 E-value=4e-26 Score=221.69 Aligned_cols=128 Identities=22% Similarity=0.438 Sum_probs=99.7
Q ss_pred eEEEeeeeEecCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEEE
Q 008771 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNY 492 (554)
Q Consensus 424 ~l~~~~l~~~y~~-~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~y 492 (554)
+|+++||+|+|++ +.+|++|||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence 4899999999965 5799999999999999999999999999999999999999999999999766 2589
Q ss_pred EecccccCCCCCCCHHHHHHhhcc-cCCHHHHHHHHhhCCCC------hh----hhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAE-DWRIDDIKGLLGRCNFK------AD----MLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~L~~~~l~------~~----~~~~~~~~LSGGek~Rl~l 554 (554)
++|++. + +..||+||+..... ......+...+...++. ++ .+...+..|||||||||+|
T Consensus 81 v~Q~~~--l-f~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~i 150 (242)
T d1mv5a_ 81 VSQDSA--I-MAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAI 150 (242)
T ss_dssp ECCSSC--C-CCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHH
T ss_pred Eccccc--c-CCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHH
Confidence 999863 5 44599999875532 33444444443333221 11 2234556899999999975
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.92 E-value=1.8e-25 Score=214.82 Aligned_cols=124 Identities=25% Similarity=0.401 Sum_probs=105.5
Q ss_pred eEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eEEEEec
Q 008771 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (554)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~--------~~~y~~Q 495 (554)
.|++ ++.+.|++.. + |+||++. +|+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 2 ~l~v-~~~k~~g~~~-~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q 77 (240)
T d2onka1 2 FLKV-RAEKRLGNFR-L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp CEEE-EEEEEETTEE-E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred EEEE-EEEEEECCEE-E-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeecc
Confidence 3667 5678888754 3 7999995 689999999999999999999999999999999999766 3689999
Q ss_pred ccccCCCCCCCHHHHHHhhcccCCH----HHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 496 NQAEALDLDKTVLETVAEAAEDWRI----DDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++ .+++.+||.||+..+...... +.+..+|..+|+. +..+++|..|||||||||+|
T Consensus 78 ~~--~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~-~~~~~~~~~LSGG~kQRvai 137 (240)
T d2onka1 78 DY--ALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVAL 137 (240)
T ss_dssp SC--CCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHH
T ss_pred ch--hhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcH-hhhhCChhhCCHHHHHHHHH
Confidence 85 588999999999987543332 4588899999995 67899999999999999975
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.9e-25 Score=218.00 Aligned_cols=127 Identities=28% Similarity=0.520 Sum_probs=100.9
Q ss_pred eEEEeeeeEecCCc---cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eE
Q 008771 424 VVTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (554)
Q Consensus 424 ~l~~~~l~~~y~~~---~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~ 490 (554)
.|+++||+|+|+++ .+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 90 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQV 90 (251)
T ss_dssp CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHh
Confidence 49999999999753 589999999999999999999999999999999999999999999999876 26
Q ss_pred EEEecccccCCCCCCCHHHHHHhhcc-cCCHHHHH---------HHHhhC--CCChhhhccccCcCChhhhhcccC
Q 008771 491 NYFEQNQAEALDLDKTVLETVAEAAE-DWRIDDIK---------GLLGRC--NFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~-~~~~~~~~---------~~L~~~--~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
+|++|++. + ++.||.+|+..+.. .....++. ..+..+ ++ ...+++.+..|||||||||+|
T Consensus 91 ~~v~Q~~~--l-f~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~-~~~i~~~~~~LSGGqkQRvai 162 (251)
T d1jj7a_ 91 AAVGQEPQ--V-FGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGY-DTEVDEAGSQLSGGQRQAVAL 162 (251)
T ss_dssp EEECSSCC--C-CSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGG-GCBCCSSCSSSCHHHHHHHHH
T ss_pred hhcccccc--c-cCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccc-hhhHhccCccCChhHceEEEE
Confidence 89999973 4 45799999987632 22222221 223333 22 224567788999999999975
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.91 E-value=5.7e-25 Score=214.83 Aligned_cols=127 Identities=25% Similarity=0.407 Sum_probs=104.5
Q ss_pred EEEeeeeEecCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eEEE
Q 008771 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNY 492 (554)
Q Consensus 425 l~~~~l~~~y~~--~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~----------~~~y 492 (554)
|+++||+|.|++ .++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 14 I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 93 (253)
T d3b60a1 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL 93 (253)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEE
T ss_pred EEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEE
Confidence 899999999975 3689999999999999999999999999999999999999999999999766 3689
Q ss_pred EecccccCCCCCCCHHHHHHhhcc-cCCHHHHHHHHhhCCCCh----------hhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAE-DWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSGGek~Rl~l 554 (554)
++|++. + +..|+.+|+..+.. ....+++...+...++.. ..+.+.+..|||||||||+|
T Consensus 94 v~Q~~~--l-~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvai 163 (253)
T d3b60a1 94 VSQNVH--L-FNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAI 163 (253)
T ss_dssp ECSSCC--C-CSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHH
T ss_pred Eeeccc--c-CCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHH
Confidence 999862 3 56799999987643 455666666666555421 12446678999999999975
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=3.6e-22 Score=192.48 Aligned_cols=124 Identities=24% Similarity=0.364 Sum_probs=103.2
Q ss_pred ceEEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee----------EEE
Q 008771 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (554)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~----------~~y 492 (554)
.+++++|++++| .++++||+|++||++||+||||||||||+++|+|+. |.+|+|.++|.++. .+|
T Consensus 2 ~il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~ 76 (231)
T d1l7vc_ 2 IVMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAY 76 (231)
T ss_dssp EEEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEE
T ss_pred eEEEEECcccCc----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhcee
Confidence 478999998765 689999999999999999999999999999999975 68999999998662 478
Q ss_pred EecccccCCCCCCCHHHHHHhhccc-CCHHHHHHHHhhCCCChhhhccccCcCChhhhhcccC
Q 008771 493 FEQNQAEALDLDKTVLETVAEAAED-WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGek~Rl~l 554 (554)
++|+. ...+..++.+++...... ...+.+..++..+++. +.+++++..|||||||||+|
T Consensus 77 ~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~LSgG~~Qrv~i 136 (231)
T d1l7vc_ 77 LSQQQ--TPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRL 136 (231)
T ss_dssp ECSCC--CCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHH
T ss_pred eeccc--cCCccccHHHHhhhccchhhHHHHHHHHHHhcCCH-hHhCcChhhcCHHHHHHHHH
Confidence 88874 344667899988765443 3355678889999995 46899999999999999864
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.85 E-value=4.2e-22 Score=197.27 Aligned_cols=121 Identities=25% Similarity=0.381 Sum_probs=91.9
Q ss_pred EEEeeeeEecCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeEEEEecccccCCCCC
Q 008771 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504 (554)
Q Consensus 425 l~~~~l~~~y~~~~~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~~~~y~~Q~~~~~l~~~ 504 (554)
+.++++++ .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +++|++|++ .+ +.
T Consensus 39 i~~~~~~~--~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g---~i~~v~Q~~--~l-~~ 110 (281)
T d1r0wa_ 39 VSFSHLCL--VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG---RVSFCSQFS--WI-MP 110 (281)
T ss_dssp -CHHHHHH--TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS---CEEEECSSC--CC-CS
T ss_pred EEEEEcCC--CCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC---EEEEEeccc--cc-cC
Confidence 44555553 456899999999999999999999999999999999999999999999987 478999985 34 45
Q ss_pred CCHHHHHHhhcccCCHHHHHHHHhhCCCC----------hhhhccccCcCChhhhhcccC
Q 008771 505 KTVLETVAEAAEDWRIDDIKGLLGRCNFK----------ADMLDRKVSLLSGGEKIILLY 554 (554)
Q Consensus 505 ~tv~e~l~~~~~~~~~~~~~~~L~~~~l~----------~~~~~~~~~~LSGGek~Rl~l 554 (554)
.||.+|+..+.. .........+..+.+. ...+.+.+..|||||||||+|
T Consensus 111 ~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~l 169 (281)
T d1r0wa_ 111 GTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISL 169 (281)
T ss_dssp EEHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHH
T ss_pred ceeecccccccc-ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHH
Confidence 699999976542 3334444444444321 112345567899999999975
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.69 E-value=1.4e-18 Score=159.49 Aligned_cols=85 Identities=11% Similarity=0.002 Sum_probs=69.9
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEeecCCCCC--CCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcceEEEeeCCeee
Q 008771 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNH--LDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (554)
Q Consensus 258 ~~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~--LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~~d~i~~l~~g~~~ 335 (554)
..+|+|++++.++++++..+|++|++|||+.. .+......+.+.+++.+.++|+++|+.... .+|+++..+.+|+++
T Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~~-~~~~~i~~~~~~~i~ 158 (178)
T d1ye8a1 80 FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVH-PLVKEIRRLPGAVLI 158 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCS-HHHHHHHTCTTCEEE
T ss_pred hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHHH-HhhceEEEEeCCEEE
Confidence 36899999999999999999999999997644 466778888888988899999999998654 579999999999875
Q ss_pred ec-cCChhH
Q 008771 336 TY-EGNYSQ 343 (554)
Q Consensus 336 ~~-~G~~~~ 343 (554)
.- ..|++.
T Consensus 159 ~v~~~nrd~ 167 (178)
T d1ye8a1 159 ELTPENRDV 167 (178)
T ss_dssp ECCTTTTTT
T ss_pred EECCccHHH
Confidence 43 334443
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.09 E-value=5.2e-10 Score=110.44 Aligned_cols=79 Identities=19% Similarity=0.309 Sum_probs=64.2
Q ss_pred CCCCCCChhHHHHHHHHHH----HccCCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcceEEE
Q 008771 255 RLVASFSSGWQMRMSLGKI----LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVE 328 (554)
Q Consensus 255 ~~~~~LSGGqrqRv~LAra----L~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~~~~d~i~~ 328 (554)
.....+|+|||+...++.. ...+|.++++|||-+||+|.....|.++|++ .+.-||++||.+.+++ .+|+++.
T Consensus 215 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~-~~d~~~~ 293 (308)
T d1e69a_ 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVME-AADLLHG 293 (308)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGG-GCSEEEE
T ss_pred chhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hcccEEE
Confidence 3457899999998777654 5567789999999999999999999998853 4678999999999996 5898855
Q ss_pred --eeCCee
Q 008771 329 --TEMGVS 334 (554)
Q Consensus 329 --l~~g~~ 334 (554)
+++|..
T Consensus 294 v~~~~g~s 301 (308)
T d1e69a_ 294 VTMVNGVS 301 (308)
T ss_dssp EEESSSCE
T ss_pred EEEeCCEE
Confidence 566643
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.78 E-value=7.9e-09 Score=105.94 Aligned_cols=74 Identities=19% Similarity=0.391 Sum_probs=60.7
Q ss_pred CCCCCCChhHHHHHHHHHHH----ccCCCeEeecCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcceEE
Q 008771 255 RLVASFSSGWQMRMSLGKIL----LQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIV 327 (554)
Q Consensus 255 ~~~~~LSGGqrqRv~LAraL----~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~g~tvIiisHd~~~l~~~~d~i~ 327 (554)
++...||||||.+++||-.+ ..+++++|||||+++||+..+..+.++|. ..+.-+|+|||++.++. .||+++
T Consensus 328 ~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~-~ad~~~ 406 (427)
T d1w1wa_ 328 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE-KSDALV 406 (427)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT-TCSEEE
T ss_pred hhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHH-hcccEE
Confidence 34577899999998876543 56778999999999999999999988874 34557999999999886 589987
Q ss_pred Ee
Q 008771 328 ET 329 (554)
Q Consensus 328 ~l 329 (554)
.+
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
Confidence 55
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.43 E-value=2.5e-08 Score=89.67 Aligned_cols=34 Identities=35% Similarity=0.360 Sum_probs=31.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~ 485 (554)
+|+|+||||||||||+++|+|.++|..|.+...+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~ 35 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEE 35 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECC
Confidence 6899999999999999999999999999887764
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.20 E-value=1.3e-05 Score=74.88 Aligned_cols=47 Identities=15% Similarity=0.028 Sum_probs=35.7
Q ss_pred HccCCCeEeecCCCCCCCHHHHH----HHHHHHccCCCeEEEEecCHHHHH
Q 008771 274 LLQDPDLLLLDEPTNHLDLDTIE----WLEGYLGKQDVPMVIISHDRAFLD 320 (554)
Q Consensus 274 L~~~p~lLlLDEPt~~LD~~~~~----~l~~~l~~~g~tvIiisHd~~~l~ 320 (554)
.+.+..++|+||+..|=|+..-. .+.+.|.+.+..++++||..++..
T Consensus 111 ~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 111 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred cCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 44566799999999999996433 344555566889999999987765
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=2.3e-05 Score=73.61 Aligned_cols=46 Identities=15% Similarity=0.005 Sum_probs=31.4
Q ss_pred HccCCCeEeecCCCCCCCHHHHHH----HHHHH-ccCCCeEEEEecCHHHH
Q 008771 274 LLQDPDLLLLDEPTNHLDLDTIEW----LEGYL-GKQDVPMVIISHDRAFL 319 (554)
Q Consensus 274 L~~~p~lLlLDEPt~~LD~~~~~~----l~~~l-~~~g~tvIiisHd~~~l 319 (554)
.+.+..++|+||+..|=++..-.. +.+.+ .+.+..+|++||..+..
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 355566999999999999854332 33334 44566788889986544
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=7.1e-06 Score=73.86 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=29.0
Q ss_pred eEEceeEEEECCCEEEEECCCCccHHHHHHHHHCC
Q 008771 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 112 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
.+++.+|.+.+| +++|+|+|||||||++.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 467778888776 9999999999999999999744
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=1.1e-05 Score=72.42 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=27.3
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008771 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 439 ~l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~ 471 (554)
.|.+.+|++.+| +..|+|+|||||||+|.+|.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 366777777666 99999999999999999995
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.18 E-value=0.00093 Score=63.35 Aligned_cols=34 Identities=29% Similarity=0.312 Sum_probs=26.5
Q ss_pred eEEceeEEEECCCEEEEECCCCccHHHHHHHHHC
Q 008771 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 112 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G 145 (554)
-|+++..=+.+|+.+.|.|++|+|||||+.-|+-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3444432368999999999999999999887763
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.00014 Score=63.43 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
+++|+|++|||||||++.|+..+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999986544
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.01 E-value=0.00012 Score=65.44 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=24.4
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCCCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (554)
|.++.|+||+|||||||++.|....+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 889999999999999999999877653
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.00 E-value=0.00019 Score=66.36 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=26.5
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCCCCCceeEE
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~ 155 (554)
+|.+.+++|++|+|||||++.|.|...-..|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 4889999999999999999999998776677765
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=5.9e-05 Score=66.53 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=24.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceE
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~p~~G~ 480 (554)
.|.|+||+|||||||++.|+..+....+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~ 31 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVP 31 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCE
Confidence 58899999999999999999887655443
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.00017 Score=62.83 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.3
Q ss_pred EEEEECCCCccHHHHHHHHHCCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
+++|+|++|||||||++.|+..+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999986543
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.95 E-value=0.00018 Score=63.05 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=24.4
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
.|.+|.|+|++||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999998654
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.94 E-value=0.00018 Score=72.31 Aligned_cols=41 Identities=34% Similarity=0.614 Sum_probs=29.8
Q ss_pred EEEEeEEEEeCCeeeEEceeEEEECCCEEEEECCCCccHHHHHHHHH
Q 008771 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (554)
Q Consensus 98 i~~~~ls~~y~~~~~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~ 144 (554)
|+++|. ++|.+.. .+.+..+.+.+|+|+|||||||++.+|+
T Consensus 6 l~l~NF-ks~~~~~-----~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 6 LELSNF-KSYRGVT-----KVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEEESC-SSCCSEE-----EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEEeCe-eeeCCCE-----EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 667775 3554332 3344556699999999999999999984
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.89 E-value=0.00022 Score=62.43 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.|.++.|+|++||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999999765
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.87 E-value=0.0002 Score=63.95 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=23.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 450 GEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 450 Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
|.+|.|+||+|||||||.+.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987654
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.00011 Score=64.67 Aligned_cols=30 Identities=30% Similarity=0.277 Sum_probs=25.6
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCCceeE
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I 154 (554)
.+.|+||+|+|||||++.|+..+....+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v 32 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence 589999999999999999999886655444
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.78 E-value=0.00026 Score=62.01 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=23.9
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.+|-++.|+|.+||||||+.+.|+-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998554
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.76 E-value=0.00029 Score=61.63 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=23.8
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
.+|-+|.|+|+.||||||+.+.|+..+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998544
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.75 E-value=0.00015 Score=63.54 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEKP 476 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~p 476 (554)
+++|+|.+|||||||+..|+..++.
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999988776554
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.71 E-value=0.00034 Score=61.42 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
+|+|+|+.|||||||.+.|+..+.
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999987653
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.70 E-value=0.00031 Score=61.26 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=23.9
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357889999999999999999999754
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.65 E-value=0.00056 Score=63.16 Aligned_cols=34 Identities=38% Similarity=0.449 Sum_probs=26.3
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~ 482 (554)
+|...+++|++|+|||||++.|.|......|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 4889999999999999999999997766666653
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.63 E-value=0.00042 Score=60.80 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=21.8
Q ss_pred CEEEEECCCCccHHHHHHHHHCCC
Q 008771 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
..++|+|+.|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999765
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.62 E-value=0.00021 Score=66.37 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCCCCCceeEE
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~ 155 (554)
+|.+.+++|++|+|||||++.|.|...-..|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 4789999999999999999999998766677775
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.60 E-value=0.00052 Score=59.86 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=24.0
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
++|-.++|.|++||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998655
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.59 E-value=0.0018 Score=59.83 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=23.8
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHCC
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
|++|..+.|.|++|||||||+.-|+-.
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 789999999999999999998766643
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.56 E-value=0.00032 Score=61.44 Aligned_cols=26 Identities=23% Similarity=0.219 Sum_probs=22.2
Q ss_pred CEEEEECCCCccHHHHHHHHHCCCCC
Q 008771 124 EKVGLVGVNGAGKTTQLRIIAGQEEP 149 (554)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~p 149 (554)
.+++|+|.+|||||||+.-|...+..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999988776653
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.54 E-value=0.00052 Score=66.08 Aligned_cols=20 Identities=55% Similarity=0.916 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 008771 452 KTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~ 471 (554)
..+|+|||||||||+|.+|.
T Consensus 26 lnvlvG~NgsGKS~iL~Ai~ 45 (308)
T d1e69a_ 26 VTAIVGPNGSGKSNIIDAIK 45 (308)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 88999999999999999983
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=0.00053 Score=58.74 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
.|.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.53 E-value=0.00062 Score=59.35 Aligned_cols=28 Identities=25% Similarity=0.448 Sum_probs=24.1
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
++|=.|+|+|+.||||||+.+.|+..+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999987554
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.51 E-value=0.00057 Score=58.52 Aligned_cols=23 Identities=48% Similarity=0.466 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.+.|+|++||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.0094 Score=55.81 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.2
Q ss_pred ECCCEEEEECCCCccHHHHHHHHH
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIA 144 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~ 144 (554)
.+|+++.|.|+.|+|||||+-.|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 469999999999999999987655
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.44 E-value=0.00062 Score=59.22 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=23.0
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
.+-++.|+|++||||||+.+.|+..+
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46688999999999999999998755
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.43 E-value=0.00062 Score=60.54 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
+|||.|+.|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999976544
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.40 E-value=0.00087 Score=58.28 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.4
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
..++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.36 E-value=0.00053 Score=61.00 Aligned_cols=26 Identities=38% Similarity=0.441 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+|-++.|+|++||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999998644
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.33 E-value=0.00096 Score=58.48 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.6
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
+.+++|.|+.||||||+.+.|+-.+.
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999986554
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.33 E-value=0.00098 Score=60.77 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCCC
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
.|.++.|+||+|||||||++.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999999876554
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.33 E-value=0.001 Score=57.83 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 450 GEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 450 Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
..+|.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999998765
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.33 E-value=0.00077 Score=59.90 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
++||.|+.|||||||.+.|.-.+
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.33 E-value=0.00073 Score=58.67 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
.|.|+|+.||||||+.+.|+-.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.31 E-value=0.00087 Score=57.14 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.1
Q ss_pred CEEEEECCCCccHHHHHHHHHC
Q 008771 124 EKVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G 145 (554)
.++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999997753
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.30 E-value=0.00093 Score=57.78 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
.|.|+||.||||||+.+.|+..+.
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999997654
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.28 E-value=0.0008 Score=58.39 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.++|+|+.||||||+.+.|+-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999998543
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.25 E-value=0.0011 Score=56.55 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 008771 451 EKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 451 e~iaIvG~NGsGKSTLlk~L~G 472 (554)
..|.|+|+.|||||||.+.|+.
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999998754
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.23 E-value=0.0011 Score=57.35 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.5
Q ss_pred EEEEECCCCccHHHHHHHHHCCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
++.|.|+.||||||+.+.|+..+.
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999997653
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.21 E-value=0.0012 Score=57.79 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Q 008771 451 EKTAIIGPNGCGKSTLLKLIMGLEKP 476 (554)
Q Consensus 451 e~iaIvG~NGsGKSTLlk~L~G~~~p 476 (554)
-+|+|.|+.||||||+.+.|+..+..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999765543
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.20 E-value=0.00069 Score=60.22 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.9
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|-+|.|+|+.||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999997643
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.13 E-value=0.0011 Score=59.44 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+++|+|+.|+|||||++.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 59999999999999999999863
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.13 E-value=0.0006 Score=63.16 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=22.6
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~ 482 (554)
+|.+.+++|++|+|||||++.|.|......|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 4788899999999999999999998766666654
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.11 E-value=0.0015 Score=59.49 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=22.8
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
.|-.+.|+||+|+|||||.+.|+-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 48899999999999999999987543
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.05 E-value=0.0014 Score=59.52 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
+|||.|+.|||||||.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999998876543
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.97 E-value=0.0016 Score=58.14 Aligned_cols=22 Identities=50% Similarity=0.696 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 008771 453 TAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 453 iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
|.|+||+|||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999997654
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.94 E-value=0.0019 Score=56.41 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.|+|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.93 E-value=0.0017 Score=57.97 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.1
Q ss_pred EEEECCCCccHHHHHHHHHCCCC
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
+.|+||+|||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999976543
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.92 E-value=0.0012 Score=57.66 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHCCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
+++|||+.|||||||++.|.+-..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 789999999999999999988653
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.91 E-value=0.0018 Score=58.82 Aligned_cols=43 Identities=19% Similarity=0.208 Sum_probs=28.6
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccc
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~ 171 (554)
++||.|+.|||||||.+.|+-.+.-.. +.-....+.++++|..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~----~~~~~~~~~vi~~D~y 46 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE----VDYRQKQVVILSQDSF 46 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG----SCGGGCSEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchhc----cccCCCceEEEecccc
Confidence 689999999999999999976553110 0001124667777643
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.90 E-value=0.0014 Score=57.29 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|+|+|+.|||||||++.|.+-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999998864
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.89 E-value=0.0017 Score=55.26 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+++|||++|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.86 E-value=0.002 Score=56.83 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
++||+|..|+|||||++.|+|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999853
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.85 E-value=0.0019 Score=57.86 Aligned_cols=21 Identities=48% Similarity=0.754 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 008771 453 TAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 453 iaIvG~NGsGKSTLlk~L~G~ 473 (554)
|.|+||+|||||||.+.|+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998653
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.84 E-value=0.002 Score=56.04 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.9
Q ss_pred EEEECCCCccHHHHHHHHHCCC
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+.|+|+.||||||+.++|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998654
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.0021 Score=56.20 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+|+|+|..|+|||||++.|+|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.83 E-value=0.0019 Score=55.46 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
+|+|+|..|||||||++.+.+-..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999987543
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.83 E-value=0.0019 Score=55.45 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+++|||..|||||||++.+.+-.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998764
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.81 E-value=0.0023 Score=56.85 Aligned_cols=26 Identities=42% Similarity=0.514 Sum_probs=23.2
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
++|=++.|+||.||||||+.+.|+-.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999953
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.80 E-value=0.002 Score=57.66 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=19.4
Q ss_pred EEEECCCCccHHHHHHHHHCCC
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
++|+||+|||||||++.|+-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987544
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.80 E-value=0.0018 Score=57.81 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|+|+|+.|+|||||++.|+|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 59999999999999999999864
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.79 E-value=0.002 Score=56.43 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=20.2
Q ss_pred CEEEEECCCCccHHHHHHHHHCCC
Q 008771 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+.+.|+|+.||||||+.+.|+-.+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999998543
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.79 E-value=0.0019 Score=56.79 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=21.1
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.++|||+.|+|||||++.|+|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.79 E-value=0.002 Score=54.82 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|+|+|+.|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999853
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.78 E-value=0.0023 Score=56.24 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=21.4
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+|+|+|..|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999863
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.78 E-value=0.002 Score=54.84 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
++.|+|+.|||||||++.+++-.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999987643
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.78 E-value=0.0013 Score=58.17 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
-|||||+.++|||||++.|+|..
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999998753
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.77 E-value=0.0022 Score=55.73 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 008771 453 TAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 453 iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
|.|+|+.||||||+.++|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998754
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=95.74 E-value=0.018 Score=54.22 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=26.1
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCCCC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
=|+.|.++-|.|++|||||||+-.++....
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHH
Confidence 467899999999999999999988877654
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.72 E-value=0.0023 Score=58.78 Aligned_cols=22 Identities=36% Similarity=0.371 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+++|+|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.71 E-value=0.0023 Score=54.55 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|.|+|+.|||||||++.|.+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999998643
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.71 E-value=0.0033 Score=58.30 Aligned_cols=28 Identities=32% Similarity=0.413 Sum_probs=22.5
Q ss_pred EEEEecC-CEEEEECCCCCcHHHHHHHHh
Q 008771 444 NLTIERG-EKTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 444 s~~i~~G-e~iaIvG~NGsGKSTLlk~L~ 471 (554)
++.+.++ ..+.|+|||.+||||+||.++
T Consensus 34 di~l~~~~~~~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 34 PLNLSPQRRMLIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp EEEECSSSCEEEEECCTTSSHHHHHHHHH
T ss_pred eEEECCCceEEEEeccCchhhHHHHHHHH
Confidence 4556554 468899999999999999874
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.70 E-value=0.0023 Score=55.03 Aligned_cols=25 Identities=44% Similarity=0.652 Sum_probs=22.1
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
|=+++|+|+.|+|||||++.|+|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999864
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.69 E-value=0.0024 Score=58.65 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|+|+|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.68 E-value=0.0023 Score=57.13 Aligned_cols=25 Identities=32% Similarity=0.250 Sum_probs=21.8
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
..+++|+||.||||||+.+.|+-.+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998644
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.68 E-value=0.0018 Score=57.09 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=20.6
Q ss_pred EEEECCCCccHHHHHHHHHCCC
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
|||+|..|+|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999864
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.64 E-value=0.0031 Score=55.91 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=20.9
Q ss_pred CEEEEECCCCccHHHHHHHHHCCC
Q 008771 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
..+.|+||+|+|||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999999888544
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.63 E-value=0.0021 Score=55.88 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|.|+|+.||||||+.++|+..+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 47788999999999999998654
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.61 E-value=0.0033 Score=55.87 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=22.5
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhC
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G 472 (554)
++|=+|.|+||.||||||+.+.|+.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 3677999999999999999999984
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.60 E-value=0.0031 Score=54.96 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
.|+|+|+.|+|||||++.|+|...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999998543
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.60 E-value=0.0029 Score=56.55 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=22.1
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
-.++.|+||.||||||+.+.|+..+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999999755
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.59 E-value=0.003 Score=55.65 Aligned_cols=23 Identities=48% Similarity=0.677 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|||+|..|+|||||++.|+|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999853
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.59 E-value=0.0028 Score=55.35 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=19.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 008771 451 EKTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 451 e~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+.|.|+|+.||||||+.+.|+-.
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999754
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.57 E-value=0.0038 Score=53.87 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=21.4
Q ss_pred EEEEECCCCccHHHHHHHHHCCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
+++|+|+.|||||||++.|.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 588999999999999999998643
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.54 E-value=0.0029 Score=54.93 Aligned_cols=23 Identities=43% Similarity=0.486 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.+.|+|+.||||||+.++|+..+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 36788999999999999998654
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.51 E-value=0.0028 Score=56.81 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.++|||+.|||||||++.|+|-.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998753
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.51 E-value=0.0033 Score=55.16 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|.|+||.||||||+.+.|+..+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999996543
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.51 E-value=0.0034 Score=54.19 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
+|+|+|+.|||||||++.|.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 689999999999999999998544
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.50 E-value=0.0046 Score=56.92 Aligned_cols=34 Identities=38% Similarity=0.504 Sum_probs=26.0
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHHh--------CCCCCCc
Q 008771 444 NLTIERGEKTAIIGPNGCGKSTLLKLIM--------GLEKPRG 478 (554)
Q Consensus 444 s~~i~~Ge~iaIvG~NGsGKSTLlk~L~--------G~~~p~~ 478 (554)
|+.+. ++.+.|+|||.+||||+||.++ |..-|.+
T Consensus 30 di~~~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~ 71 (224)
T d1ewqa2 30 DLEMA-HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAE 71 (224)
T ss_dssp EEEES-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSS
T ss_pred eEEeC-CcEEEEECCCccccchhhhhhHHHHHHHhccceeecC
Confidence 44553 4589999999999999999764 6666653
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.49 E-value=0.0034 Score=55.08 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
++.|+|+.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998654
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.49 E-value=0.0029 Score=56.33 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 008771 450 GEKTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 450 Ge~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
.-+|.|+||.||||||+.+.|+..
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999753
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.47 E-value=0.0045 Score=55.08 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=24.2
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHCC
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
|++|+++.|.|++|||||||+--++..
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 789999999999999999998877654
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.46 E-value=0.003 Score=56.16 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|||+|+.||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.44 E-value=0.0036 Score=55.67 Aligned_cols=23 Identities=39% Similarity=0.335 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
++.|+||.||||||+.+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998644
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.43 E-value=0.0037 Score=55.35 Aligned_cols=23 Identities=13% Similarity=0.458 Sum_probs=20.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 008771 451 EKTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 451 e~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
..|.|+||+|+|||||++.|+..
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998854
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.42 E-value=0.0024 Score=57.08 Aligned_cols=27 Identities=37% Similarity=0.393 Sum_probs=23.9
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+++.++.|+||.||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998654
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.41 E-value=0.0027 Score=56.46 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
++.|+||.||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998544
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.40 E-value=0.0037 Score=55.80 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 008771 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 451 e~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
-+|.|+||.||||||+.+.|+.-+
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999998755
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.38 E-value=0.0028 Score=56.36 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|.|+||.||||||+.+.|+--
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999753
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.37 E-value=0.0027 Score=61.88 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=27.5
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHCCCCCCc
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~ 151 (554)
++.+..+.|.|+.|||||||++.|++.++|+.
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhccccc
Confidence 45566789999999999999999999998753
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.33 E-value=0.0042 Score=54.45 Aligned_cols=23 Identities=43% Similarity=0.684 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|+|+|..|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.31 E-value=0.0037 Score=54.73 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
+|.|.|+.||||||+.+.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999987654
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.30 E-value=0.0042 Score=55.61 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
++.++|..|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999644
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.30 E-value=0.0038 Score=54.70 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHCCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
++.|.|++||||||+.+.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 577889999999999999987653
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.30 E-value=0.0038 Score=53.51 Aligned_cols=25 Identities=44% Similarity=0.640 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 450 Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
|=+|+|+|+.|+|||||++.|+|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999999864
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.28 E-value=0.0043 Score=54.66 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
++.|+|+.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999654
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.26 E-value=0.0043 Score=56.30 Aligned_cols=23 Identities=43% Similarity=0.484 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|+|-||.||||||+.+.|+.-+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998533
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.25 E-value=0.0022 Score=56.21 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.++|+|..++|||||++.|+|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999999864
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.24 E-value=0.0045 Score=54.96 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|.|+||.||||||..+.|+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.23 E-value=0.0033 Score=55.98 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 451 EKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 451 e~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
=+|+|-|+-||||||+++.|...+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999999987653
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.22 E-value=0.004 Score=55.76 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|+|+|+.|||||||++.|+|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999998763
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.22 E-value=0.003 Score=55.79 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
.|||+|+.++|||||++.|+|..
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998743
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.21 E-value=0.0043 Score=53.94 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|+|+|..|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999985
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.19 E-value=0.0053 Score=53.93 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.7
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhC
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G 472 (554)
..-+.|.++|+.||||||+.+.++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999998864
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.19 E-value=0.0041 Score=55.26 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=19.3
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
++||.|+.||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999863
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.19 E-value=0.0041 Score=54.50 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
.|+|+|+.|+|||||++.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.18 E-value=0.0063 Score=54.06 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=24.0
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhC
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G 472 (554)
=|.+|+.+.|.||.|||||||+--++.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 378999999999999999999877764
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.17 E-value=0.005 Score=53.69 Aligned_cols=22 Identities=45% Similarity=0.646 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|+|+|..|+|||||++.|+|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.17 E-value=0.0045 Score=53.82 Aligned_cols=23 Identities=48% Similarity=0.548 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+++|+|..|||||||++.|.+-.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999853
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.16 E-value=0.0037 Score=60.89 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=31.3
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~ 483 (554)
-+..|.-+.|+|+-|||||||+++|++..+|..=.|.+
T Consensus 162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 35566779999999999999999999999886544544
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.16 E-value=0.0049 Score=54.27 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|.|+||.||||||+.+.|+.-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998644
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.16 E-value=0.005 Score=54.13 Aligned_cols=25 Identities=36% Similarity=0.318 Sum_probs=21.4
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G 145 (554)
+.-+.+.++|+.||||||+.+-++-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999998853
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.15 E-value=0.0018 Score=55.71 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+++|+|..|+|||||++.|+|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.14 E-value=0.0048 Score=55.70 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|||+|..||||||+.+.|..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.05 E-value=0.0048 Score=57.97 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=20.8
Q ss_pred EEEECCCCccHHHHHHHHHCCC
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
++|+|..|+|||||++.|.|..
T Consensus 35 I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 8999999999999999999965
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.03 E-value=0.0041 Score=58.06 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEKP 476 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~p 476 (554)
-|.+.||.|||||||.+.|++.+..
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhc
Confidence 4779999999999999999997653
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.01 E-value=0.0057 Score=55.17 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=21.2
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+++|.||.||||||+.+.|+..+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 88999999999999999999655
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.01 E-value=0.0057 Score=55.17 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|+|.||.||||||+.+.|+.-+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999997543
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.01 E-value=0.0042 Score=54.55 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 008771 453 TAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 453 iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
|||+|..++|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999864
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.00 E-value=0.006 Score=53.61 Aligned_cols=23 Identities=43% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.+.|+|+.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.00 E-value=0.0041 Score=55.38 Aligned_cols=24 Identities=33% Similarity=0.279 Sum_probs=21.7
Q ss_pred CEEEEECCCCccHHHHHHHHHCCC
Q 008771 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
-+++|-|..||||||+++.|+..+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998755
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.99 E-value=0.0059 Score=54.58 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
.|.++|..|||||||.+.|+..
T Consensus 4 li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999853
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.96 E-value=0.0054 Score=53.81 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
++.|+|+.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998543
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.95 E-value=0.0043 Score=55.36 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=23.8
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 447 IERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 447 i~~Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+.++-+|.|+||.||||||+.+.|+.-+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467789999999999999999998643
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.94 E-value=0.006 Score=55.25 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+++|-||.||||||+.+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57888999999999999999755
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.92 E-value=0.0045 Score=57.71 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=21.8
Q ss_pred EEEEECCCCccHHHHHHHHHCCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
.+.|.||.|||||||.+.|++.+.
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 588999999999999999999764
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.90 E-value=0.0061 Score=55.32 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.8
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCC
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
.+|-+|.|+|.+|||||||.+.|...
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56778999999999999999999743
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.88 E-value=0.0034 Score=54.84 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|+|+|+.++|||||++.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999864
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.88 E-value=0.0058 Score=53.56 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|.|+||.||||||..+.|+--
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999754
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.83 E-value=0.007 Score=53.10 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|.|+||.||||||+.+.|+.-+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999997543
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.80 E-value=0.0067 Score=54.73 Aligned_cols=21 Identities=43% Similarity=0.582 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
++||.|..||||||+.+++.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999963
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.79 E-value=0.0071 Score=54.56 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+|..++|-|+.||||||+++.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998654
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.79 E-value=0.0073 Score=53.09 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
++.|+|+-||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998644
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.79 E-value=0.0067 Score=55.03 Aligned_cols=27 Identities=37% Similarity=0.513 Sum_probs=23.9
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
++|-+++|-|+.||||||+.+.|...+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999988654
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.78 E-value=0.14 Score=47.86 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=20.4
Q ss_pred CCEEEEECCCCccHHHHHHHHHC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G 145 (554)
..+++|+|.-|.|||||++.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998864
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.76 E-value=0.0075 Score=53.00 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|.|+||-||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999999998643
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.73 E-value=0.0077 Score=53.65 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.3
Q ss_pred CEEEEECCCCccHHHHHHHHHCCC
Q 008771 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
=++.|+|+.||||||+.+.|+-.+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999644
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.73 E-value=0.013 Score=50.57 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=18.9
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
+++|+|..|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 579999999999999997775
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.70 E-value=0.007 Score=52.18 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+++|+|+.|+|||||++.+.+-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999977653
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.70 E-value=0.0079 Score=53.55 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 008771 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 451 e~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
=+|.|+||-||||||+.+.|+--+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998643
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.69 E-value=0.0071 Score=52.15 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|+|+|+.|+|||||++.+.+-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6889999999999999988653
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.67 E-value=0.0073 Score=52.53 Aligned_cols=21 Identities=33% Similarity=0.665 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 589999999999999999875
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.65 E-value=0.0095 Score=51.73 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+++|||+.|+|||||++.+.+-
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 4789999999999999988753
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.64 E-value=0.005 Score=56.45 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=23.9
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
++-+|+|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999998764
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.63 E-value=0.0076 Score=54.69 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=22.9
Q ss_pred ECCCEEEEECCCCccHHHHHHHHHCC
Q 008771 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
++|-++-|.|.+|||||||.+.|.-.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999998743
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.60 E-value=0.009 Score=51.56 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+++|||+.|+|||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999987764
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.58 E-value=0.0081 Score=52.82 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.3
Q ss_pred EEEECCCCccHHHHHHHHHCCC
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+||||...||||||++.|+|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999743
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.58 E-value=0.005 Score=56.42 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCCC
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357899999999999999999998763
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.57 E-value=0.0079 Score=52.18 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.1
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+++++|..|+|||||++.+.+-
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 3899999999999999987643
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.54 E-value=0.0088 Score=54.63 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
.+.|.||+|+||||++++|+..+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 37899999999999999998643
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.54 E-value=0.0081 Score=52.10 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+++|+.|||||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 489999999999999998864
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.52 E-value=0.0089 Score=54.02 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|||+|..||||||+.+.|..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 6899999999999999998643
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.52 E-value=0.01 Score=53.80 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=21.0
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
++.+++++||+|+||||.+--|+-.+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999997655554443
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.50 E-value=0.009 Score=54.16 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=24.3
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
++|-.|+|-|+-||||||+.+.|+..+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999999877543
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.49 E-value=0.0085 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.|+|+|+.|+|||||++.|.+-.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.46 E-value=0.0095 Score=53.66 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.1
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|-.|+|-|+-||||||+++.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998644
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.44 E-value=0.013 Score=50.81 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=18.6
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
+++|||..|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999987654
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.44 E-value=0.0088 Score=52.17 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+++|||+.|+|||||++.+.+-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999977653
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.43 E-value=0.003 Score=54.14 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|+|+|..|+|||||++.|+|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.43 E-value=0.0089 Score=52.15 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998765
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.42 E-value=0.0069 Score=58.36 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
+|||.|++||||||+.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 689999999999999999987664
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.39 E-value=0.0088 Score=56.06 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|+|+|..|+|||||++.|+|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999964
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.35 E-value=0.0083 Score=51.81 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|+|+|+.|+|||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988753
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.35 E-value=0.0085 Score=52.07 Aligned_cols=22 Identities=41% Similarity=0.696 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+++|||+.|+|||||++.|.+-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999764
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.34 E-value=0.0088 Score=58.19 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 008771 450 GEKTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 450 Ge~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
.-+|||+|+.|+|||||+..|...
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~ 77 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGML 77 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHH
Confidence 347999999999999999999753
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.34 E-value=0.01 Score=54.82 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHhCCCC
Q 008771 453 TAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 453 iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
+.|.||+||||||++++|+..+.
T Consensus 55 lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 55 AMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999998654
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.33 E-value=0.013 Score=50.44 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.3
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
+++|+|+.|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999986664
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.33 E-value=0.0093 Score=51.80 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|+|+|+.|+|||||++.|.+-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999775
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.33 E-value=0.01 Score=53.88 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=24.6
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCCC
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
+|..++|-|..||||||+.++|+-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 689999999999999999999987664
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.28 E-value=0.01 Score=54.21 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=20.2
Q ss_pred EEEECCCCccHHHHHHHHHCCC
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+.|.||+|+||||++++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 7899999999999999999755
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.27 E-value=0.0094 Score=57.39 Aligned_cols=42 Identities=12% Similarity=0.231 Sum_probs=30.7
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccccc
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~ 173 (554)
++||.|++||||||+.+.|..++.-.. ...+|..+++|..+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~-------~~~~v~~Is~D~F~~ 123 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWP-------EHRRVELITTDGFLH 123 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTST-------TCCCEEEEEGGGGBC
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhc-------CCCceEEEeeeeeEC
Confidence 689999999999999999987764211 123467778776543
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.26 E-value=0.011 Score=53.33 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
++||+|..||||||..+++..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 789999999999999999863
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.26 E-value=0.012 Score=51.72 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|+|+|+.|+|||||++.+.+-
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4899999999999999998864
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.22 E-value=0.012 Score=50.81 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|..|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998775
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.21 E-value=0.0094 Score=53.42 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
.|+|+|+.|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.20 E-value=0.013 Score=53.12 Aligned_cols=40 Identities=35% Similarity=0.488 Sum_probs=27.1
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccc
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~ 170 (554)
++.+++++||+|+||||.+-=|+-.+. .. ..+|+++.=|.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~-~~--------g~kV~lit~Dt 44 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NL--------GKKVMFCAGDT 44 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-TT--------TCCEEEECCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HC--------CCcEEEEEecc
Confidence 568999999999999886555564443 12 23577776553
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.20 E-value=0.012 Score=51.60 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+++|+|+.|+|||||++.+.+-.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 38899999999999999888643
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.19 E-value=0.011 Score=51.50 Aligned_cols=22 Identities=45% Similarity=0.542 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|+|+|+.|||||||++.+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 5889999999999999988754
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.19 E-value=0.012 Score=50.66 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.3
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+++++|.+|+|||||++.+++-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999987654
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.15 E-value=0.011 Score=53.93 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 008771 453 TAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 453 iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+.|.||+|+||||++++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999998753
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.10 E-value=0.011 Score=51.80 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.6
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
+++|+|..|+|||||++.+++
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987764
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.09 E-value=0.014 Score=50.54 Aligned_cols=24 Identities=46% Similarity=0.711 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHCCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
+++|+|..|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCcCHHHHHHHHhCCcc
Confidence 478999999999999999988643
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.08 E-value=0.017 Score=50.25 Aligned_cols=24 Identities=42% Similarity=0.679 Sum_probs=21.1
Q ss_pred EEEEECCCCccHHHHHHHHHCCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
++.|+|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCcC
Confidence 478999999999999999987653
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.08 E-value=0.012 Score=50.70 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|+.|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987664
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.07 E-value=0.01 Score=54.39 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=22.8
Q ss_pred EEEECCCCCcHHHHHHHHhCCCCCCce
Q 008771 453 TAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (554)
Q Consensus 453 iaIvG~NGsGKSTLlk~L~G~~~p~~G 479 (554)
+.+.||.||||||+.++|+..+....+
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~~~ 64 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTNIH 64 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEECCCCCcHHHHHHHHHhccCCCcc
Confidence 679999999999999999987665433
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=94.07 E-value=0.013 Score=50.68 Aligned_cols=30 Identities=37% Similarity=0.224 Sum_probs=25.7
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCCCC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
..++|.+++|.|+=|||||||.|.|+.-+-
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 346899999999999999999998886553
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.07 E-value=0.012 Score=51.22 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+++|||+.|+|||||++.+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4789999999999999987654
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.06 E-value=0.013 Score=53.27 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=25.3
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~~p 476 (554)
+|-.|+|-|+-||||||+.++|+..+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 6889999999999999999999877654
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.04 E-value=0.011 Score=54.22 Aligned_cols=25 Identities=44% Similarity=0.517 Sum_probs=22.0
Q ss_pred EEEECCCCccHHHHHHHHHCCCCCC
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEEPD 150 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~ 150 (554)
+.+.||.|+||||+.++|+..+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCcHHHHHHHHHhccCCC
Confidence 6899999999999999999876544
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.03 E-value=0.011 Score=51.33 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|..|||||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999997764
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.01 E-value=0.055 Score=53.81 Aligned_cols=49 Identities=24% Similarity=0.265 Sum_probs=35.5
Q ss_pred HHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 008771 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (554)
Q Consensus 267 Rv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l 319 (554)
--+|..+|=++||+++..|-. |.++.....+.- ..|.-|+-+-|=-+-+
T Consensus 217 ~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa-~tGhlV~tTlHa~~a~ 265 (401)
T d1p9ra_ 217 ARGLRAILRQDPDVVMVGEIR---DLETAQIAVQAS-LTGHLVMSTLHTNTAV 265 (401)
T ss_dssp HHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSSSH
T ss_pred HHHHHHHHhhcCCEEEecCcC---ChHHHHHHHHHH-hcCCeEEEEeccCchH
Confidence 446778899999999999987 446666555443 3477788887765544
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.01 E-value=0.013 Score=54.05 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.6
Q ss_pred EEEECCCCccHHHHHHHHHCCCC
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
+.|.||+|+||||++++|+..+.
T Consensus 55 lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 55 AMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998653
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.00 E-value=0.0068 Score=57.74 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
+|||.|++||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999877554
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.99 E-value=0.014 Score=50.38 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=26.3
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p 476 (554)
..++|++|++.|+=|||||||.|.|+..+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 3468999999999999999999999865543
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.99 E-value=0.014 Score=50.29 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=19.1
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
+++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998764
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.96 E-value=0.014 Score=58.35 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=21.1
Q ss_pred EEEECCCCccHHHHHHHHHCCCC
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
++|+|+.|+|||||++.|.|...
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHhCCCc
Confidence 79999999999999999999643
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.96 E-value=0.016 Score=49.80 Aligned_cols=22 Identities=27% Similarity=0.361 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+++|||..|+|||||++.+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999888764
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.94 E-value=0.015 Score=52.89 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=23.5
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHC
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G 145 (554)
|++|.++.|.|+.|||||||+--++-
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999999977653
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.94 E-value=0.013 Score=51.47 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|..|||||||++.+++
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998774
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=0.014 Score=49.96 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+++|||..|+|||||++.+.+-
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988753
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.94 E-value=0.0082 Score=57.13 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=26.1
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEecccc
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~~ 171 (554)
++||.|++||||||+.+.|...+.. .+..+..+.+|..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~---------~~v~~~iI~~Dsf 43 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRR---------EGVKAVSIEGDAF 43 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHH---------HTCCEEEEEGGGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhh---------cCCCeEEEeCCCC
Confidence 7999999999999999998875532 1234567888764
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.92 E-value=0.014 Score=50.12 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|+++|..|+|||||++.+++-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999988754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.92 E-value=0.013 Score=50.49 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|..|||||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 579999999999999998764
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.91 E-value=0.016 Score=50.18 Aligned_cols=24 Identities=38% Similarity=0.710 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
+|+|+|+.|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCcCHHHHHHHHhCCcc
Confidence 589999999999999999988643
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.91 E-value=0.012 Score=50.84 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999999764
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.90 E-value=0.013 Score=50.46 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998874
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.88 E-value=0.014 Score=50.40 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=18.9
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
+++|||..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998775
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.83 E-value=0.015 Score=52.76 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=18.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 008771 450 GEKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 450 Ge~iaIvG~NGsGKSTLlk~L~G 472 (554)
.-+|+++||+|+||||.+--|+-
T Consensus 11 p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 11 PFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34889999999999996555553
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.83 E-value=0.014 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
.|||+|.-.+|||||++.|+|..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Confidence 39999999999999999999853
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.79 E-value=0.02 Score=49.66 Aligned_cols=23 Identities=39% Similarity=0.768 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|.|+|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 58899999999999999998754
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.79 E-value=0.016 Score=50.13 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+++|+|..|+|||||++.+.+-
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999988763
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.79 E-value=0.014 Score=50.18 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|+|+|..|+|||||++.+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999988753
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.76 E-value=0.019 Score=49.45 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.0
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+++|+|..|+|||||++.+.+-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999877653
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.76 E-value=0.016 Score=51.75 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|+|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998644
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.75 E-value=0.014 Score=53.07 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.0
Q ss_pred EEEECCCCccHHHHHHHHHCCC
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+.|.||+|+|||||+++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6899999999999999999754
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.71 E-value=0.014 Score=56.74 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.7
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.-++||.|+.|||||||+..|+..+
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998544
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.70 E-value=0.017 Score=49.51 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|..|||||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999875
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.68 E-value=0.016 Score=53.58 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.0
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
.+..+.|+||.|||||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 45689999999999999999887543
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.68 E-value=0.017 Score=51.59 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+++|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998654
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.65 E-value=0.021 Score=49.20 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=18.7
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
+++|+|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.62 E-value=0.018 Score=52.24 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=19.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 451 EKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 451 e~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
-+|+++||+|+||||.+--|+-.++
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999997666664443
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.55 E-value=0.018 Score=54.76 Aligned_cols=22 Identities=32% Similarity=0.298 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|||.|+.|||||||...|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 6899999999999999877543
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.53 E-value=0.015 Score=50.73 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|.|+|+.|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999887753
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.53 E-value=0.011 Score=51.85 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+++|+|+.|+|||||++.+.+-
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998654
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.53 E-value=0.021 Score=51.49 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=21.7
Q ss_pred EECCCEEEEECCCCccHHHHHHHH
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRII 143 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i 143 (554)
|++|+++.|.|++|+|||||+--+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 789999999999999999998543
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.50 E-value=0.017 Score=50.08 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=17.9
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
+++|||+.|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999976654
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.49 E-value=0.021 Score=51.85 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.4
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHh
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~ 471 (554)
=+.+|..+.|.|+.|||||||.--++
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 37899999999999999999987765
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.49 E-value=0.016 Score=52.94 Aligned_cols=41 Identities=22% Similarity=0.288 Sum_probs=28.0
Q ss_pred CCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHH
Q 008771 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (554)
Q Consensus 277 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l 319 (554)
+--||++| ...++.+.....+ .++...+..+|++-.-++.+
T Consensus 95 D~~ilVvd-a~~g~~~~~~~~~-~~~~~~~~p~iivlNK~D~~ 135 (227)
T d1g7sa4 95 DLAILIVD-INEGFKPQTQEAL-NILRMYRTPFVVAANKIDRI 135 (227)
T ss_dssp SEEEEEEE-TTTCCCHHHHHHH-HHHHHTTCCEEEEEECGGGS
T ss_pred ceEEEEEe-cccCcccchhHHH-HHhhcCCCeEEEEEECccCC
Confidence 44577778 6778888876554 45555677777777776654
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.48 E-value=0.023 Score=48.63 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=18.5
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
+++|||..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.46 E-value=0.035 Score=47.81 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.0
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
+++|||+.|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999998875
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.44 E-value=0.012 Score=51.44 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|+|+|+.|+|||||++.|.+-
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999764
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.43 E-value=0.017 Score=52.23 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=19.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 450 Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
.-++.++||||+||||.+--|+-.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3478899999999999777676443
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.41 E-value=0.02 Score=49.48 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|.|+|+.|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999875
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.38 E-value=0.02 Score=49.74 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
++.|+|..|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6889999999999999887754
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.38 E-value=0.018 Score=54.70 Aligned_cols=29 Identities=34% Similarity=0.526 Sum_probs=27.0
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCC
Q 008771 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 445 ~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+.|-+|++++|+|+.|+|||||+..|+..
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999864
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.36 E-value=0.017 Score=52.99 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEECCCCccHHHHHHHHHCCCC
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
+.+.||.|+||||++++|++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 46999999999999999998653
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.35 E-value=0.019 Score=49.16 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998864
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.35 E-value=0.019 Score=49.81 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|+.|||||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999977654
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.33 E-value=0.02 Score=51.77 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=26.6
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccc
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~ 170 (554)
..++.++||+|+||||.+-=|+-.+. .. ..+|+++.=|.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~-~~--------g~kV~lit~Dt 48 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK-GK--------GRRPLLVAADT 48 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH-HT--------TCCEEEEECCS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HC--------CCcEEEEeccc
Confidence 45789999999999887766665443 11 23577776553
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.33 E-value=0.024 Score=48.68 Aligned_cols=22 Identities=45% Similarity=0.528 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|+|+|..|+|||||++.+.+-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999887653
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.32 E-value=0.018 Score=54.69 Aligned_cols=32 Identities=28% Similarity=0.289 Sum_probs=28.0
Q ss_pred eeEEEECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 116 isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.=+.|-+|++.+|+|+.|+|||||+..|+...
T Consensus 36 ~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 36 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 34678899999999999999999999998644
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.30 E-value=0.019 Score=49.52 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999997764
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.29 E-value=0.017 Score=52.85 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHhCCCC
Q 008771 453 TAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 453 iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
+.+.||.|+||||+.++|++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999998544
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.28 E-value=0.02 Score=52.80 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.+..+.|.|+.|+|||||++.++-..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 35678999999999999999887543
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.26 E-value=0.014 Score=53.15 Aligned_cols=40 Identities=28% Similarity=0.294 Sum_probs=25.7
Q ss_pred CCCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccc
Q 008771 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (554)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~ 170 (554)
+-.++++|||+|+||||.+-=|+-.+. . ...+|+++.=|.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~-~--------~~~kV~lit~Dt 49 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFV-D--------EGKSVVLAAADT 49 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH-H--------TTCCEEEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-H--------CCCceEEEeecc
Confidence 445889999999999886554453332 1 123577777553
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.26 E-value=0.025 Score=49.19 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+++++|..|+|||||++.+.+-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999988764
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.25 E-value=0.025 Score=48.70 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.0
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+++|||..|+|||||++-+.+-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6889999999999999976643
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.23 E-value=0.02 Score=55.12 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.4
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+.-+.++||.|||||+|.|.|+...
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhhcc
Confidence 3456789999999999999999864
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.21 E-value=0.018 Score=50.00 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=18.7
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
+++|||..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987664
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.19 E-value=0.02 Score=49.81 Aligned_cols=22 Identities=45% Similarity=0.557 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|+|+|..|+|||||++.+.+-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999988763
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.19 E-value=0.019 Score=52.08 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=16.3
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
..-+|+++||+|+||||.+--|+-.++
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345799999999999997665554443
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.15 E-value=0.023 Score=51.54 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=23.5
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHC
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G 145 (554)
+++|+++.|.|+.|+|||||+--++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999877763
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.15 E-value=0.017 Score=50.54 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=25.4
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCCCceeE
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I 154 (554)
++.|||..|+|||||++-+.....|+.|..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 579999999999999999877667777743
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.13 E-value=0.021 Score=51.95 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=23.3
Q ss_pred EEEEECCCCccHHHHHHHH-HCCCCCCce
Q 008771 125 KVGLVGVNGAGKTTQLRII-AGQEEPDSG 152 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i-~G~~~p~~G 152 (554)
++.|+|.+|+|||||++-+ .+...|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 6899999999999999876 455667777
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=93.13 E-value=0.016 Score=50.18 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEKP 476 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~p 476 (554)
+|.|+|+.|+|||||++.+.+-..+
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~~ 38 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQSV 38 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6889999999999999999876544
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.07 E-value=0.028 Score=48.46 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
++++||..|+|||||++-+.+-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5799999999999999888743
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.06 E-value=0.024 Score=56.59 Aligned_cols=23 Identities=30% Similarity=0.674 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
.|||+|..|+|||||++.|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999853
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.06 E-value=0.019 Score=55.20 Aligned_cols=24 Identities=29% Similarity=0.638 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
-+.++||.|||||+|.|+|+..+.
T Consensus 51 ~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHhhccc
Confidence 456899999999999999998654
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.02 Score=49.73 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999988764
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.022 Score=49.87 Aligned_cols=21 Identities=33% Similarity=0.297 Sum_probs=18.8
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
+++|||..|+|||||++.+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999987664
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.03 E-value=0.024 Score=51.83 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.1
Q ss_pred EECCCEEEEECCCCccHHHHHHHHH
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIA 144 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~ 144 (554)
+++|.++.|.|+.|||||||.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 6899999999999999999977443
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=93.02 E-value=0.015 Score=50.49 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHCCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
++.|+|+.|+|||||++.+.+-..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999999986543
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.02 E-value=0.02 Score=53.22 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
-|.+.||.|||||+|.+.|+....
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECcCCCCHHHHHHHHhhccc
Confidence 367899999999999999997643
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.01 E-value=0.022 Score=49.83 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|..|+|||||++.+++
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999988765
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.01 E-value=0.023 Score=54.94 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 008771 450 GEKTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 450 Ge~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
.-+|||+|+-|+|||||+..|...
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHH
Confidence 347899999999999999998753
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.99 E-value=0.027 Score=52.57 Aligned_cols=26 Identities=38% Similarity=0.608 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 450 GEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 450 Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
.--+.+.||.|||||+|.+.|+..+.
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 34578999999999999999998654
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.99 E-value=0.021 Score=52.11 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=23.5
Q ss_pred EECCCEEEEECCCCccHHHHHHHHHC
Q 008771 120 VKKGEKVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G 145 (554)
|++|.++.|.|++|||||||.-.++.
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 77999999999999999999887763
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.99 E-value=0.026 Score=50.01 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=18.7
Q ss_pred EEEECCCCccHHHHHHHHHCC
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~ 146 (554)
++|+|+.|+|||||++.+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 899999999999999977753
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.97 E-value=0.023 Score=51.51 Aligned_cols=21 Identities=29% Similarity=0.320 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 008771 453 TAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 453 iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+.+.||.||||||++++|+..
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHH
Confidence 678999999999999998754
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.97 E-value=0.026 Score=51.10 Aligned_cols=38 Identities=34% Similarity=0.449 Sum_probs=25.3
Q ss_pred CEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccc
Q 008771 124 EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (554)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~ 170 (554)
.++++|||+|+||||.+-=|+-.+. ..| .+|+++.=|.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~-~~g--------~kV~lit~Dt 47 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE-QQG--------KSVMLAAGDT 47 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH-TTT--------CCEEEECCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-HCC--------CcEEEEeccc
Confidence 5799999999999886555564443 222 3577776543
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=92.96 E-value=0.025 Score=51.77 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|||+|.-||||||+.+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999954
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.94 E-value=0.019 Score=52.68 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 008771 453 TAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 453 iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+.|.||.|+||||+.++++..
T Consensus 36 lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999999864
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.91 E-value=0.024 Score=48.87 Aligned_cols=21 Identities=43% Similarity=0.612 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|.|+|+.|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998874
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.90 E-value=0.023 Score=51.93 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|||+|...+|||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 6999999999999999999874
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.87 E-value=0.021 Score=50.61 Aligned_cols=21 Identities=43% Similarity=0.566 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|+.|||||||++.+.+
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhh
Confidence 389999999999999998775
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.86 E-value=0.021 Score=49.39 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.7
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
+++|+|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999998764
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.84 E-value=0.024 Score=54.07 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=23.0
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCCCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (554)
+=.+||||...||||||+++|++.-.|
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~~~ 36 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSVLG 36 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCCC
Confidence 346999999999999999999986443
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.81 E-value=0.027 Score=53.45 Aligned_cols=22 Identities=23% Similarity=0.227 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999877543
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.81 E-value=0.031 Score=50.97 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=23.2
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhC
Q 008771 447 IERGEKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 447 i~~Ge~iaIvG~NGsGKSTLlk~L~G 472 (554)
|.+|..+.|.|+.|||||||+.-|+-
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999876653
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.80 E-value=0.031 Score=50.30 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.6
Q ss_pred EecCCEEEEECCCCCcHHHHHHHH
Q 008771 447 IERGEKTAIIGPNGCGKSTLLKLI 470 (554)
Q Consensus 447 i~~Ge~iaIvG~NGsGKSTLlk~L 470 (554)
+.+|+.+.|.|++|+|||||+--+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 789999999999999999997543
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.79 E-value=0.022 Score=49.29 Aligned_cols=21 Identities=43% Similarity=0.629 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|..|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998764
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.77 E-value=0.03 Score=52.31 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.4
Q ss_pred CEEEEECCCCccHHHHHHHHHCCC
Q 008771 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.-+.|.||.|||||+|++.|+..+
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHHHc
Confidence 457899999999999999999765
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.77 E-value=0.017 Score=50.03 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+|+|+|+.|+|||||++.+++-
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999988654
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.73 E-value=0.033 Score=47.98 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|..|+|||||+.-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998874
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.71 E-value=0.027 Score=48.67 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=18.7
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
++.|+|..|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997765
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.70 E-value=0.016 Score=50.17 Aligned_cols=22 Identities=41% Similarity=0.444 Sum_probs=18.3
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+++|+|+.|+|||||++.+++-
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999977653
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.69 E-value=0.027 Score=48.45 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.1
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+++|||..|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999987643
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.67 E-value=0.027 Score=48.42 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|..|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998764
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.64 E-value=0.024 Score=52.62 Aligned_cols=23 Identities=35% Similarity=0.287 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
-+.|.||.|||||+|.+.|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 47899999999999999999753
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.59 E-value=0.019 Score=49.76 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=9.1
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
+++|+|..|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999987665
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.59 E-value=0.028 Score=48.49 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|.++|..|||||||++.+++
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998875
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.53 E-value=0.02 Score=49.65 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=9.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|..|||||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987775
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.52 E-value=0.029 Score=50.83 Aligned_cols=42 Identities=10% Similarity=0.185 Sum_probs=27.6
Q ss_pred CCCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHH
Q 008771 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL 319 (554)
Q Consensus 277 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l 319 (554)
+..++|+||.- ++.......|...+.. ....+++++++..-+
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhccccccceeeeeccCchhhh
Confidence 35799999965 4555556666665544 355777888887554
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.52 E-value=0.066 Score=46.81 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=24.4
Q ss_pred eEEceeEEEECCCEEEEECCCCccHHHHHHHHH
Q 008771 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (554)
Q Consensus 112 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~ 144 (554)
.++..-+.+ .|.=+.|.|++|+|||||.-.+.
T Consensus 4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 445444444 57889999999999999987765
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.51 E-value=0.054 Score=47.46 Aligned_cols=32 Identities=31% Similarity=0.300 Sum_probs=26.0
Q ss_pred eEEceeEEEECCCEEEEECCCCccHHHHHHHHH
Q 008771 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (554)
Q Consensus 112 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~ 144 (554)
.++..-+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 456555666 68889999999999999997765
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.50 E-value=0.029 Score=48.37 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=18.8
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
+++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998754
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.48 E-value=0.029 Score=48.31 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999997644
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.47 E-value=0.028 Score=50.93 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=22.2
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCCCCCceeEEEcCCCceEEEEeccc
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~~~~~~i~~v~Q~~ 170 (554)
..++++|||+|+||||.+-=|+-.+. . ...+|+++.=|.
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~~-~--------~g~kV~lit~Dt 50 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFYK-K--------KGFKVGLVGADV 50 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHHH-H--------TTCCEEEEECCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH-H--------CCCceEEEEeec
Confidence 45799999999999886555554332 1 123577777554
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.44 E-value=0.03 Score=48.25 Aligned_cols=21 Identities=48% Similarity=0.514 Sum_probs=18.2
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
+++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999996544
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.43 E-value=0.032 Score=49.12 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=22.6
Q ss_pred EEEEECCCCccHHHHHHHHHCC--CCCCce
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ--EEPDSG 152 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~--~~p~~G 152 (554)
++.|+|..|+|||||++-+.-. +.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 5789999999999999988422 357777
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.43 E-value=0.032 Score=51.27 Aligned_cols=27 Identities=26% Similarity=0.519 Sum_probs=23.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC
Q 008771 451 EKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (554)
Q Consensus 451 e~iaIvG~NGsGKSTLlk~L~G~~~p~ 477 (554)
-.+.|.||.|+||||+++.|+..+...
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~ 70 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDK 70 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhcc
Confidence 478899999999999999999876543
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.37 E-value=0.033 Score=50.37 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=23.0
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHh
Q 008771 447 IERGEKTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 447 i~~Ge~iaIvG~NGsGKSTLlk~L~ 471 (554)
+.+|+.+.|.|+.|+|||||.--++
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8899999999999999999877775
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.36 E-value=0.028 Score=52.21 Aligned_cols=23 Identities=30% Similarity=0.707 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHhCCCC
Q 008771 453 TAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 453 iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
+.+.||.|||||+|.+.|++...
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEecCCCCChhHHHHHHHHHcC
Confidence 57999999999999999998654
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.33 E-value=0.032 Score=48.71 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=19.3
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+++++|..|+|||||++-+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999976654
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.33 E-value=0.03 Score=51.03 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=23.5
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHh
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~ 471 (554)
=|.+|..+.|.|+.|||||||.-.++
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 37889999999999999999988776
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.33 E-value=0.031 Score=50.57 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 008771 453 TAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 453 iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+-+.||.|+||||++++|+..
T Consensus 38 lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHH
Confidence 679999999999999999864
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.31 E-value=0.032 Score=48.11 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|.|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998764
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.30 E-value=0.026 Score=51.71 Aligned_cols=41 Identities=12% Similarity=0.243 Sum_probs=30.6
Q ss_pred CCCeEeecCCCCCCCHHHHHHHHHHHccC--CCeEEEEecCHHH
Q 008771 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDRAF 318 (554)
Q Consensus 277 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--g~tvIiisHd~~~ 318 (554)
+..++|+||.-. |.......|...+... ...+|++|++.+.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~ 173 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 173 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeeccccc
Confidence 456999999864 7888887787777653 3457889988753
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.28 E-value=0.032 Score=56.36 Aligned_cols=44 Identities=18% Similarity=0.363 Sum_probs=28.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-eEEEEeccc
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-LPNYFEQNQ 497 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~~~~~~-~~~y~~Q~~ 497 (554)
-|.++||.|||||-|.+.|++.+... -+..+.... ..||+..+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fTeaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFTEVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC----CCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC--EEEeecceeeecceeecch
Confidence 47789999999999999999976543 344443322 357776653
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=92.28 E-value=0.034 Score=51.94 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=26.0
Q ss_pred eeceEEEEecCCEEEEECCCCCcHHHHHHHHhC
Q 008771 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 440 l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G 472 (554)
|+.+..=+.+|+.+.|.|+.|+|||||+.-|+-
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 343333378999999999999999999877763
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.21 E-value=0.033 Score=48.56 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|..|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999997765
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.19 E-value=0.033 Score=48.79 Aligned_cols=21 Identities=38% Similarity=0.360 Sum_probs=18.4
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
+++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999987654
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.18 E-value=0.033 Score=48.62 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=17.8
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
+++|+|..|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999975544
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.16 E-value=0.036 Score=48.29 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=24.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceE
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~p~~G~ 480 (554)
+|.|+|..|+|||||++-+....-|+.|.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccE
Confidence 68999999999999999987666676663
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=92.14 E-value=0.037 Score=50.55 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
++||.|.-||||||+.++|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999964
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.13 E-value=0.034 Score=48.73 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|..|+|||||++.++.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999988764
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.10 E-value=0.039 Score=50.67 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=23.7
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCCCCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPD 150 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~ 150 (554)
...+.|.||.|+||||+++.|+..+...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~ 70 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDK 70 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3478899999999999999999877543
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.04 E-value=0.029 Score=52.57 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=23.0
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 449 RGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 449 ~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
..--|.|.||.|||||+|+++|++.+.
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 344588999999999999999998764
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.99 E-value=0.039 Score=50.34 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=22.5
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHh
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~ 471 (554)
=+.+|..+.|.|+.|||||||.--++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 37889999999999999999876553
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.96 E-value=0.04 Score=48.43 Aligned_cols=28 Identities=36% Similarity=0.546 Sum_probs=22.7
Q ss_pred EEEEECCCCCcHHHHHHHHh--CCCCCCce
Q 008771 452 KTAIIGPNGCGKSTLLKLIM--GLEKPRGG 479 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~--G~~~p~~G 479 (554)
+|.|+|..|+|||||++-+. -...|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 68999999999999999883 23457767
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.95 E-value=0.037 Score=48.33 Aligned_cols=21 Identities=33% Similarity=0.757 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|.|+|..|+|||||++-++.
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999976654
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.91 E-value=0.037 Score=50.02 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=28.2
Q ss_pred CCeEeecCCCCCCCHHHHHHHHHHHccC--CCeEEEEecCHHHH
Q 008771 278 PDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDRAFL 319 (554)
Q Consensus 278 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--g~tvIiisHd~~~l 319 (554)
..++|+||.- .+.......|...+.+. ..-+++++++...+
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred eEEEEEeccc-cchhhHHHHHHHHhhhcccceeeccccCcHHHh
Confidence 4699999964 67777778888887653 44556667665443
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=91.85 E-value=0.04 Score=53.20 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=21.0
Q ss_pred CCEEEEECCCCccHHHHHHHHHCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
.-++||.|+-|+|||||+..|...
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHH
Confidence 457999999999999999998754
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=91.74 E-value=0.049 Score=48.18 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.5
Q ss_pred EEEECCCCccHHHHHHHHHCCC
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+||+|.-.+|||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999865
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=91.72 E-value=0.036 Score=51.36 Aligned_cols=22 Identities=50% Similarity=0.665 Sum_probs=20.0
Q ss_pred EEEECCCCccHHHHHHHHHCCC
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+.|.||.|||||+|++.|+...
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 5799999999999999999754
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.58 E-value=0.038 Score=51.48 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHhCCCC
Q 008771 453 TAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 453 iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
+.|.||.|||||+|+++++....
T Consensus 41 iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEecCCCCCchHHHHHHHHHhC
Confidence 67899999999999999998544
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.57 E-value=0.038 Score=48.68 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|+|+|+.|+|||||++.+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999977653
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.57 E-value=0.046 Score=49.54 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=23.3
Q ss_pred EEEEECCCCCcHHHHHHHH-hCCCCCCce
Q 008771 452 KTAIIGPNGCGKSTLLKLI-MGLEKPRGG 479 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L-~G~~~p~~G 479 (554)
+|.|+|++|+|||||++-+ .+...|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 6899999999999999887 455667766
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.50 E-value=0.039 Score=48.60 Aligned_cols=21 Identities=33% Similarity=0.297 Sum_probs=18.0
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
+++|+|..|+|||||++-+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999876654
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.44 E-value=0.036 Score=51.91 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.2
Q ss_pred CCEEEEECCCCccHHHHHHHHHCCC
Q 008771 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
..-+.|.||.|+|||+|++.|++..
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcchhHHHHHHHHh
Confidence 3448899999999999999999877
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.34 E-value=0.045 Score=52.44 Aligned_cols=73 Identities=12% Similarity=0.071 Sum_probs=42.0
Q ss_pred HHHHhhhcCCCccccCCCCCCCChhHHHHHHHHHHHccCCCeEee--cCCCCCCCHHHHHHHHHHHccCCCeEEEEecCH
Q 008771 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLL--DEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR 316 (554)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~LAraL~~~p~lLlL--DEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~ 316 (554)
+.+.+...++.. ....++.-+..++....-+...|-++++ +|.. .....+++.+...+.+..++.++...
T Consensus 182 ~~~~l~~~~l~~-----~~~~~~~~e~~~~~~~~~~~~kP~~~v~Nk~d~~---~~e~~~~~~~~~~~~~~~vi~~sa~~ 253 (319)
T d1wxqa1 182 VWEAMHKLNLPE-----DPTKWSQDDLLAFASEIRRVNKPMVIAANKADAA---SDEQIKRLVREEEKRGYIVIPTSAAA 253 (319)
T ss_dssp HHHHHHHTTCCS-----CGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS---CHHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHhcCCcc-----hhhhcCHHHHHHhHHHhhhhcCchhhhcccccch---hhHHHHHHHHHHhhcCCEEEEecHHH
Confidence 344445555432 2245677777777777767777766663 3332 23444555555555677777777666
Q ss_pred HHH
Q 008771 317 AFL 319 (554)
Q Consensus 317 ~~l 319 (554)
+.-
T Consensus 254 E~~ 256 (319)
T d1wxqa1 254 ELT 256 (319)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=91.30 E-value=0.023 Score=54.94 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=23.6
Q ss_pred CEEEEECCCCccHHHHHHHHHCCCCC
Q 008771 124 EKVGLVGVNGAGKTTQLRIIAGQEEP 149 (554)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~p 149 (554)
.-+.|+|+-|+|||||+|.|+++++|
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 45799999999999999999999876
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=91.12 E-value=0.067 Score=47.24 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
.|||+|.-.+|||||+..|.|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEeccCCcHHHHHHHHHhhh
Confidence 47999999999999999999853
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.84 E-value=0.05 Score=50.62 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEECCCCccHHHHHHHHHCCC
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+.|.||.|||||+|++.|+...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 7899999999999999999854
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.71 E-value=0.043 Score=55.37 Aligned_cols=45 Identities=20% Similarity=0.434 Sum_probs=29.6
Q ss_pred CEEEEECCCCccHHHHHHHHHCCCC-CCceeEEEcCCC-ceEEEEecccc
Q 008771 124 EKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKSN-MKIAFLSQEFE 171 (554)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~-p~~G~I~~~~~~-~~i~~v~Q~~~ 171 (554)
.-+.+|||+|||||-|.|.|++.+. | -+..+... ..+|||-.+..
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l~VP---Fv~~daT~fTeaGYvG~DVe 96 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKFTEVGYVGKEVD 96 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEGGGGC----CCCCTH
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCC---EEEeecceeeecceeecchh
Confidence 4689999999999999999999763 3 23333221 24788887763
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.71 E-value=0.049 Score=51.34 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=22.0
Q ss_pred CEEEEECCCCccHHHHHHHHHCCC
Q 008771 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
-+|+|+|+-++||||||+.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999865
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.70 E-value=0.1 Score=48.86 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.3
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.+||||-..+|||||++.|++.-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999764
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.66 E-value=0.055 Score=50.81 Aligned_cols=31 Identities=32% Similarity=0.461 Sum_probs=26.6
Q ss_pred eeEEEECCCEEEEECCCCccHHHHHHHHHCC
Q 008771 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 116 isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
.=+.+-+|++.+|+|+.|+|||||+..|+..
T Consensus 61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eeccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 4468899999999999999999997777643
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=90.66 E-value=0.094 Score=45.83 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=24.1
Q ss_pred eeceEEEEecCCEEEEECCCCCcHHHHHHHHhC
Q 008771 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 440 l~~vs~~i~~Ge~iaIvG~NGsGKSTLlk~L~G 472 (554)
++..-+.+ .|.-+.|.|++|+|||||.-.|..
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34333444 688899999999999999877653
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.55 E-value=0.076 Score=49.83 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=26.5
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHHhCC
Q 008771 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 444 s~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
=+.+.+|++++|.|+.|+|||||+..|+..
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 378999999999999999999998888643
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.51 E-value=0.056 Score=50.94 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+|+|+||-++||||||+.|+|..
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 78999999999999999999864
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.47 E-value=0.062 Score=51.06 Aligned_cols=26 Identities=31% Similarity=0.584 Sum_probs=22.6
Q ss_pred EEEEECCCCccHHHHHHHHHCCCC-CC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEE-PD 150 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~-p~ 150 (554)
.+++||.-+||||||++.|+|.-- |.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence 478999999999999999999763 53
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=90.41 E-value=0.033 Score=53.84 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEKP 476 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~p 476 (554)
.+.|+|+-|+|||||++.|+++++|
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCCC
Confidence 6899999999999999999998765
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.33 E-value=0.064 Score=48.76 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
+|+|=|+=||||||+++.|.-.+.
T Consensus 4 ~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 789999999999999999987554
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.32 E-value=0.064 Score=48.74 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=21.4
Q ss_pred CEEEEECCCCccHHHHHHHHHCCC
Q 008771 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.+++|=|.-||||||+++.|.-.+
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 378999999999999999999655
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.15 E-value=0.064 Score=50.67 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=21.3
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.+++||.-.||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 38899999999999999999975
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.12 E-value=0.046 Score=50.46 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.4
Q ss_pred EEEECCCCccHHHHHHHHHCCC
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+.|.||.|+||||+++.++..+
T Consensus 49 l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHHH
Confidence 5667999999999999999765
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=90.07 E-value=0.099 Score=48.75 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=24.8
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
=|+.|.++-|.|++|||||||+-.++...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence 47799999999999999999987666554
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=89.98 E-value=0.12 Score=44.96 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=21.7
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhC
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G 472 (554)
-.-.|.=|.|+|++|+|||||.-.|..
T Consensus 10 v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 10 VDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 344577899999999999998877653
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.97 E-value=0.048 Score=50.32 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
++.|.||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 35667999999999999998764
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.83 E-value=0.12 Score=48.80 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
.|+|+|.-.||||||+++|+|..-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~ 49 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999999764
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=89.75 E-value=0.094 Score=48.52 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.0
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHh
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~ 471 (554)
.+|+.+.|.|+.|+|||||+-.|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 469999999999999999986664
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.56 E-value=0.082 Score=46.07 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=21.7
Q ss_pred EEEEECCCCccHHHHHHHHHCC---CCCCce
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ---EEPDSG 152 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~---~~p~~G 152 (554)
++.|+|..|+|||||++-+..- +.|+-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 5789999999999999988543 235545
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=89.30 E-value=0.074 Score=52.87 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=23.4
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 448 ~~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
.++-.|.|+||.||||||.+..+...+.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 3455899999999999999999987543
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=89.29 E-value=0.13 Score=44.50 Aligned_cols=32 Identities=28% Similarity=0.315 Sum_probs=24.0
Q ss_pred eEEceeEEEECCCEEEEECCCCccHHHHHHHHH
Q 008771 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (554)
Q Consensus 112 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~ 144 (554)
.++..-+.+ .|.=+.|.|++|+|||||.-.+.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 5 SLHGVLVDV-YGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 455544444 67889999999999999886554
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=89.21 E-value=0.14 Score=49.38 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=26.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~p~~G~i~~ 483 (554)
+|.|=|+=||||||+++.|+..+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence 68899999999999999999987665444444
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=89.05 E-value=0.091 Score=49.78 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=21.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 008771 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 451 e~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
=++||||..-||||||+++|++..
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHST
T ss_pred cEEEEECCCCCCHHHHHHHHHCCC
Confidence 369999999999999999999764
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.01 E-value=0.094 Score=45.64 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
+|.|+|..|+|||||++-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 688999999999999998853
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.92 E-value=0.066 Score=50.19 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=24.1
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
=|+.|.++-|.|++|||||||+-.++...
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~ 84 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANA 84 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHH
Confidence 46789999999999999999976665443
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.88 E-value=0.093 Score=50.27 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.+.++||+|+|||.|.+.|+-.+
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHhhc
Confidence 37899999999999999999765
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=88.71 E-value=0.091 Score=49.14 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 008771 452 KTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~ 471 (554)
-|+|+|+.|||||||...|+
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 37999999999999999983
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.70 E-value=0.1 Score=49.87 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
.|||||..-+|||||+++|+|...
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~~ 25 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVDV 25 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---
T ss_pred cEeEECCCCCCHHHHHHHHHCCCC
Confidence 589999999999999999998643
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.70 E-value=0.11 Score=48.86 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
.|+|+|.-.||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999976
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=88.62 E-value=0.16 Score=44.01 Aligned_cols=28 Identities=29% Similarity=0.266 Sum_probs=22.1
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008771 444 NLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 444 s~~i~~Ge~iaIvG~NGsGKSTLlk~L~ 471 (554)
++-...|.-|.|.|++|+|||||.-.+.
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCEEEEEEeCCCCCHHHHHHHHH
Confidence 3444568889999999999999886554
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=88.39 E-value=0.065 Score=50.37 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=28.5
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceE
Q 008771 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (554)
Q Consensus 445 ~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~ 480 (554)
+.|.+|++++|+|+.|+|||+|+..++-...-....
T Consensus 62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v 97 (276)
T d1fx0a3 62 IPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVI 97 (276)
T ss_dssp SCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCE
T ss_pred ccccCCceEeeccCCCCChHHHHHHHHhhhcccCce
Confidence 789999999999999999999987654444444433
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.31 E-value=0.14 Score=45.49 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=21.6
Q ss_pred EEEEECCCCccHHHHHHHHHCCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
.+||+|.-.+|||||+..|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999998654
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=88.26 E-value=0.16 Score=47.30 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=23.8
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCC
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
=|..|.++-|.||+|||||||.-.++..
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHH
Confidence 5788999999999999999987666543
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.23 E-value=0.12 Score=46.16 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=18.8
Q ss_pred EEEEECCCCccHHHHHHHHHC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAG 145 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (554)
.+||+|.-++|||||+..|.+
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 379999999999999999963
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.95 E-value=0.13 Score=48.14 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 008771 451 EKTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 451 e~iaIvG~NGsGKSTLlk~L~G 472 (554)
-+|+|+|.-|+|||||.+.++.
T Consensus 45 ~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 45 FFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.90 E-value=0.11 Score=48.72 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 008771 452 KTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~ 471 (554)
-|||+|+.|||||||...|+
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 37999999999999999984
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.87 E-value=0.17 Score=44.95 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
.|||+|.-.+|||||+..|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 589999999999999999998544
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=87.78 E-value=0.11 Score=48.46 Aligned_cols=20 Identities=45% Similarity=0.609 Sum_probs=18.3
Q ss_pred EEEEECCCCccHHHHHHHHH
Q 008771 125 KVGLVGVNGAGKTTQLRIIA 144 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~ 144 (554)
.++|+|..|+|||||+..|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999999884
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.59 E-value=0.14 Score=45.72 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 008771 452 KTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~ 471 (554)
-|||+|.-++|||||+..|.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll 24 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALT 24 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHH
Confidence 48999999999999999995
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=87.57 E-value=0.13 Score=46.77 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
.+.|.||+|+||||+.++++..
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~ 57 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKG 57 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3678999999999999998653
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=87.35 E-value=0.12 Score=50.65 Aligned_cols=30 Identities=20% Similarity=0.072 Sum_probs=26.7
Q ss_pred EEECCCEEEEECCCCccHHHHHHHHHCCCC
Q 008771 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
.++++..+.+.||.|+|||||.+.|++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 447788999999999999999999998764
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.27 E-value=0.15 Score=48.77 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHhCCCC
Q 008771 453 TAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 453 iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
+.++||.|+|||.|.+.|+..+.
T Consensus 55 ~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 55 FLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCcchhHHHHHHHHhhcc
Confidence 67899999999999999987653
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=87.24 E-value=0.14 Score=45.92 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 008771 453 TAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 453 iaIvG~NGsGKSTLlk~L~G~ 473 (554)
+-|.||.|||||-|+.+++..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 569999999999999999764
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.16 E-value=0.12 Score=46.85 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGL 473 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~ 473 (554)
++.|+|.=|||||||++-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 5679999999999999999874
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=87.03 E-value=0.089 Score=49.41 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=26.8
Q ss_pred eeEEEECCCEEEEECCCCccHHHHHHHHHCCCC
Q 008771 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (554)
Q Consensus 116 isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (554)
.=+.|-+|++++|+|+.|+|||+|+..++-...
T Consensus 60 ~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~ 92 (276)
T d1fx0a3 60 AMIPVGRGQRELIIGDRQTGKTAVATDTILNQQ 92 (276)
T ss_dssp TTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred ccccccCCceEeeccCCCCChHHHHHHHHhhhc
Confidence 346788999999999999999999986544333
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.88 E-value=0.11 Score=48.73 Aligned_cols=39 Identities=26% Similarity=0.477 Sum_probs=27.5
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceE-EEEC
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE-VLLG 484 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~p~~G~-i~~~ 484 (554)
=+..|.++-|.||+|||||||+-.++.......|. |+++
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyID 95 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFID 95 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 46789999999999999999975555433333333 4444
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.78 E-value=0.14 Score=47.98 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=29.7
Q ss_pred CCChhHHHHHHHHHHHccCCCeEeecCCCCCCCHHHHHHHHHHHccCCCeEEEE
Q 008771 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVII 312 (554)
Q Consensus 259 ~LSGGqrqRv~LAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIii 312 (554)
++++-.. +..-+.+.-||++| +..|.-+.++..+ +..++++...|+.
T Consensus 83 dF~~e~~-----~~l~~~D~avlVvd-a~~Gv~~~T~~~w-~~a~~~~lP~i~f 129 (276)
T d2bv3a2 83 DFTIEVE-----RSMRVLDGAIVVFD-SSQGVEPQSETVW-RQAEKYKVPRIAF 129 (276)
T ss_dssp SCSTTHH-----HHHHHCCEEEEEEE-TTTSSCHHHHHHH-HHHHTTTCCEEEE
T ss_pred hhHHHHH-----HHHHhhhheEEecc-ccCCcchhHHHHH-HHHHHcCCCEEEE
Confidence 4555443 33345577788888 8899998887654 4555566654444
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.67 E-value=0.16 Score=46.19 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=36.0
Q ss_pred CCeEeecCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHH-hhcceEEE
Q 008771 278 PDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD-QLCTKIVE 328 (554)
Q Consensus 278 p~lLlLDEPt~~LD~~~~~~l~~~l~~--~g~tvIiisHd~~~l~-~~~d~i~~ 328 (554)
..++|+||.-. |.......|...+.+ .+..+|++|++..-+. .+-.|..+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~~i~SRc~~ 168 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 168 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCccccChhHhhhhcc
Confidence 45999999965 888888889888876 3568889998875442 23344433
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=86.57 E-value=0.17 Score=47.28 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=21.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 008771 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 451 e~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
=++||||---+|||||+++|++..
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHCCC
Confidence 378999999999999999999754
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.50 E-value=0.17 Score=45.05 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
.+.+.||.|+||||+.+.++..+
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHhc
Confidence 37789999999999999887643
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=86.31 E-value=0.15 Score=49.80 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=25.6
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 447 i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
+.++-.+.+.||.|+||||+.+.|++.+.
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 46677899999999999999999998765
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.30 E-value=0.18 Score=44.93 Aligned_cols=52 Identities=10% Similarity=0.080 Sum_probs=36.3
Q ss_pred CCCeEeecCCCCCCCHHHHHHHHHHHccC--CCeEEEEecCHHHH-HhhcceEEEe
Q 008771 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDRAFL-DQLCTKIVET 329 (554)
Q Consensus 277 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--g~tvIiisHd~~~l-~~~~d~i~~l 329 (554)
+.+|+|+||.- .|...+...|...+.+. +.-+|++|++..-+ ..+-.|+..+
T Consensus 108 ~~kviIide~d-~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc~~i 162 (207)
T d1a5ta2 108 GAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLH 162 (207)
T ss_dssp SCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred ccceEEechhh-hhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcceeEEE
Confidence 36799999864 46677888899999864 45668889998633 3344565444
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=86.24 E-value=0.23 Score=47.52 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=26.8
Q ss_pred eEEceeEEEECCCEEEEECCCCccHHHHHHHHHCCC
Q 008771 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 112 ~l~~isl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
++.-+-..+++| ++.++||.|+|||.|.+.|++..
T Consensus 113 ~~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 113 VAEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHHHhhcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 344444566666 56668999999999999999864
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=86.22 E-value=0.25 Score=47.51 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=22.1
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEP 149 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p 149 (554)
+|.|=|+-|+||||+++.|+..+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCccCCHHHHHHHHHHHhcc
Confidence 5788899999999999999987754
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.90 E-value=0.15 Score=46.09 Aligned_cols=22 Identities=50% Similarity=0.534 Sum_probs=19.3
Q ss_pred EEEEECCCCccHHHHHHHHHCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (554)
++.|.|-=|||||||++-+...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6789999999999999988763
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=85.87 E-value=0.13 Score=48.07 Aligned_cols=30 Identities=40% Similarity=0.563 Sum_probs=25.6
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008771 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 446 ~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
=|..|.++-|.||.|||||||.-.++....
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHH
Confidence 578899999999999999999887776543
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=85.85 E-value=0.18 Score=49.19 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 008771 453 TAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 453 iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
+.++||.|||||.|.|.|+...
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eeeeCCCCccHHHHHHHHHhhc
Confidence 4568999999999999999865
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=85.75 E-value=0.19 Score=45.04 Aligned_cols=41 Identities=22% Similarity=0.111 Sum_probs=27.0
Q ss_pred ccCCCeEeecCCCCCC-CHHHHHHHHHH---HccCCCeEEEEecC
Q 008771 275 LQDPDLLLLDEPTNHL-DLDTIEWLEGY---LGKQDVPMVIISHD 315 (554)
Q Consensus 275 ~~~p~lLlLDEPt~~L-D~~~~~~l~~~---l~~~g~tvIiisHd 315 (554)
+.+.++|++|+--.-. +......|..+ +.+.|+.+|++|..
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~ 139 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 139 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCC
Confidence 4588999999864433 24444445444 45578888888874
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=84.98 E-value=0.2 Score=48.08 Aligned_cols=24 Identities=38% Similarity=0.649 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~ 475 (554)
+|.|=|+=||||||+++.|...+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 588999999999999999987654
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=84.98 E-value=0.19 Score=48.34 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=23.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMGLEKPR 477 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G~~~p~ 477 (554)
+|.|=|+=||||||+++.|...+...
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~ 32 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAIT 32 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 68999999999999999999877654
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=84.54 E-value=0.22 Score=44.07 Aligned_cols=21 Identities=38% Similarity=0.408 Sum_probs=19.3
Q ss_pred EEEECCCCccHHHHHHHHHCC
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQ 146 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~ 146 (554)
+||+|.-++|||||+..|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 799999999999999999864
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=84.06 E-value=0.24 Score=47.40 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=23.1
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008771 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (554)
Q Consensus 445 ~~i~~Ge~iaIvG~NGsGKSTLlk~L~G~~ 474 (554)
..+.+| ++.++||.|||||.|.+.|++..
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 345555 56668999999999999999863
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=84.05 E-value=0.22 Score=49.29 Aligned_cols=43 Identities=19% Similarity=0.115 Sum_probs=33.7
Q ss_pred eEeecCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhh
Q 008771 280 LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322 (554)
Q Consensus 280 lLlLDEPt~~LD~~~~~~l~~~l~~~g~tvIiisHd~~~l~~~ 322 (554)
++++||.-+-........+....+++|..+++++.++..+...
T Consensus 279 ~l~lDE~~~~~~~~~l~~~l~~~Rk~Gv~~~l~~Qs~~ql~~~ 321 (433)
T d1e9ra_ 279 WLFIDELASLEKLASLADALTKGRKAGLRVVAGLQSTSQLDDV 321 (433)
T ss_dssp EEEESCGGGSCBCSSHHHHHHHCTTTTEEEEEEESCHHHHHHH
T ss_pred EEEechHhhhcccHHHHHHHHHhCCCCceEEEEeccHHHHHHH
Confidence 6888998776665556666667788999999999998887553
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.98 E-value=0.13 Score=48.33 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=24.8
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008771 444 NLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 444 s~~i~~Ge~iaIvG~NGsGKSTLlk~L~ 471 (554)
=+.+.+|++++|.|+.|+|||||+.-++
T Consensus 62 l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 62 LVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred ccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 3789999999999999999999986554
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=83.74 E-value=0.2 Score=49.48 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=23.5
Q ss_pred CEEEEECCCCCcHHHHHHHH-hCCCCCCceEEEEC
Q 008771 451 EKTAIIGPNGCGKSTLLKLI-MGLEKPRGGEVLLG 484 (554)
Q Consensus 451 e~iaIvG~NGsGKSTLlk~L-~G~~~p~~G~i~~~ 484 (554)
.++.|+|+.|||||++++.| ........+.|.++
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD 85 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD 85 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 46899999999999998754 34443333455554
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=83.73 E-value=0.3 Score=44.05 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 008771 453 TAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 453 iaIvG~NGsGKSTLlk~L~ 471 (554)
++++|.-.+|||||+..|+
T Consensus 12 i~viGHVd~GKSTL~~~Ll 30 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLL 30 (222)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 7999999999999999995
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.65 E-value=0.29 Score=43.22 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
-+.|||+.|.|||++..-|+-.+
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHH
Confidence 36799999999999998887543
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=83.52 E-value=0.26 Score=43.59 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
.|||+|.-.+|||||+..|.+
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 389999999999999999976
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=83.41 E-value=0.27 Score=47.25 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=22.3
Q ss_pred EEEEECCCCccHHHHHHHHHCCCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQEEP 149 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p 149 (554)
++.|=|.-||||||+++.|...+..
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5889999999999999999987754
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.00 E-value=0.32 Score=42.94 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
-+.|||+.|+|||+++.-|+.
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHH
Confidence 367999999999999988875
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=83.00 E-value=0.29 Score=47.67 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.8
Q ss_pred EEEECCCCccHHHHHHHHHCCC
Q 008771 126 VGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+.++||+|+|||-|.|.|+.+.
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eeeeCCCCccHHHHHHHHHhhc
Confidence 5679999999999999999765
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=82.88 E-value=0.25 Score=47.34 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
+|+|=|+-||||||+++.|....
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEECCcCCCHHHHHHHHHHHh
Confidence 47899999999999999998655
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=82.80 E-value=0.31 Score=45.30 Aligned_cols=23 Identities=35% Similarity=0.291 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
-+.|||+.|+|||+++.-++..+
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHH
Confidence 56899999999999999887543
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=82.73 E-value=0.32 Score=45.27 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008771 452 KTAIIGPNGCGKSTLLKLIMG 472 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~G 472 (554)
-+.|||+.|+|||+++.-++.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ 61 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAW 61 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHH
Confidence 467999999999999988875
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=82.61 E-value=0.26 Score=47.01 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHCCC
Q 008771 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (554)
.+.++||+|+|||.|.+.|+-.+
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHHHh
Confidence 47889999999999999999765
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=82.54 E-value=0.29 Score=44.09 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 008771 452 KTAIIGPNGCGKSTLLKLIM 471 (554)
Q Consensus 452 ~iaIvG~NGsGKSTLlk~L~ 471 (554)
.|+|+|.-++|||||+..|.
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHH
Confidence 48999999999999998883
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.40 E-value=0.13 Score=48.34 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=24.9
Q ss_pred eeEEEECCCEEEEECCCCccHHHHHHHHH
Q 008771 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (554)
Q Consensus 116 isl~i~~Ge~~~lvG~NGsGKSTLlk~i~ 144 (554)
.=+.|-+|++++|+|+.|+|||||+.-++
T Consensus 61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 61 SLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred cccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 45688999999999999999999976444
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=81.57 E-value=0.33 Score=43.69 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=18.1
Q ss_pred EEEEECCCCccHHHHHHHHH
Q 008771 125 KVGLVGVNGAGKTTQLRIIA 144 (554)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~ 144 (554)
.+|++|.-++|||||+..|.
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHH
Confidence 37999999999999999885
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=80.66 E-value=0.33 Score=45.95 Aligned_cols=20 Identities=40% Similarity=0.642 Sum_probs=17.9
Q ss_pred ECCCEEEEECCCCccHHHHH
Q 008771 121 KKGEKVGLVGVNGAGKTTQL 140 (554)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLl 140 (554)
+.|++..+.|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 36899999999999999976
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=80.65 E-value=0.46 Score=42.75 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=17.9
Q ss_pred EEEECCCCccHHHHHHHHH
Q 008771 126 VGLVGVNGAGKTTQLRIIA 144 (554)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~ 144 (554)
++++|.-.+|||||+..|.
T Consensus 12 i~viGHVd~GKSTL~~~Ll 30 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLL 30 (222)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 7999999999999999995
|