Citrus Sinensis ID: 008801

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550---

MNSINLLGNSTMKLSGRFLIPCRNASFSAFIVIKHPNHHCLSNKSSTFCFKFDQINQIQAHPYKISGFQRILKDTQKPLCVFGPSCGQIRVNSRPFSVVSTKSRGLYLVASRVASNVSSFSTSVETRVNDGNFERIYVQNGLNVKPLVVERIDKDENIVGQEESCVEVNDDEKVGKDNLEGVRTKREETEIEKEAWRLLQEAVVTYCESPIGTVAANDPGDKQPLNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIKLIMNLCLADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFHIREYYWVDMKKINEIYRYKTEEYSTDATNKFNIYPEQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLGTPKQNESILNLIEAKWDDLVGHMPLKICYPALESEDWRIITGSDPKNT

ccccccEEcccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccEEEEEcccccccccccccEEEEEcccccEEEEEEccccccccEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccEEEcccccccccccEEEcccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccEEEccccccEEEcccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHcccccccccccccHHccccccccEEcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccEEccccccccccEEEcccccccc

cccEEEEEEcccccccEEEEEcccccccccccccccccccccccccccccccccccEEEcccccccccEEEEcccccccEcccccccccccccccEEEEccccccEEEEEEccHHccccccccEEEEcccccccEEEEccccccccEEEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHEEccccEEEEEEccccccccccccHEEHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEccccccccEEEcccccHHHEEEcccccHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHccccccccEEEccccccEEccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcEEcHHHHHHHHccccHHcccccEcccccccccccHHHHHHccccccEEEEccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccEEEccccccccEEEEcccccccc

mnsinllgnstmklsgrflipcrnasfSAFIVikhpnhhclsnksstfcfkfdqinqiqahpykisgfQRILkdtqkplcvfgpscgqirvnsrpfsvvstksrGLYLVASRVASNVSSFSTSVETRVNDGNFERIYVQnglnvkplvveridkdenivgqeescvevnddekvgkdnlegvrtkreETEIEKEAWRLLQEAVVTYCespigtvaandpgdkqplnydqvfIRDFVPSALAFLLKGEGEIVRNFLLHTLQlqswektvdcyspgqglmpasfkvrnvplesnkfeevldpdfgesaigrvapvdsgLWWIILLRAYGKitgdyalqeRVDVQTGIKLIMNLCladgfdmfpsllvtdgscmidrrmgihghpLEIQALFYTALRCsremltvsdgsgsnnLVRAINNRLSALSFHIREYYWVDMKKINEIYRYkteeystdatnkfniypeqipswlmdwipeeggylignlqpahmdfrFFTLGNLWSIVSslgtpkqnESILNLIEAKWddlvghmplkicypalesedwriitgsdpknt

MNSINLLGNSTMKLSGRFLIPCRNASFSAFIVIKHPNHHCLSNKSSTFCFKFDQINQIQAHPYKISGFQRILKDTQKPLCVFgpscgqirvnsrpfsvvsTKSRGLYLVASrvasnvssfstsvetrvndgNFERIyvqnglnvkplvveridkdenivgqeescvevnddekvgkdnlegvrtkreeteiekEAWRLLQEAVVTYCESPIGtvaandpgdkQPLNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGrvapvdsglWWIILLRAYGKITGDYALQERVDVQTGIKLIMNLCLADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYTALRCSREMLTvsdgsgsnnLVRAINNRLSALSFHIREYYWVDMKKINEIYRYKTeeystdatnkFNIYPEQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLGTPKQNESILNLIEAKWDDLVGHMPLKICypalesedwriitgsdpknt

MNSINLLGNSTMKLSGRFLIPCRNASFSAFIVIKHPNHHCLSNKSSTFCFKFDQINQIQAHPYKISGFQRILKDTQKPLCVFGPSCGQIRVNSRPFSVVSTKSRGLYLVASRVASNVSSFSTSVETRVNDGNFERIYVQNGLNVKPLVVERIDKDENIVGQEESCVEVNDDEKVGKDNLEGVrtkreeteiekeAWRLLQEAVVTYCESPIGTVAANDPGDKQPLNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIKLIMNLCLADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFHIREYYWVDMKKINEIYRYKTEEYSTDATNKFNIYPEQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLGTPKQNESILNLIEAKWDDLVGHMPLKICYPALESEDWRIITGSDPKNT

**********TMKLSGRFLIPCRNASFSAFIVIKHPNHHCLSNKSSTFCFKFDQINQIQAHPYKISGFQRILKDTQKPLCVFGPSCGQIRVNSRPFSVVSTKSRGLYLVASRVASNVSSFSTSVETRVNDGNFERIYVQNGLNVKPLVVERIDKDENIVG********************************KEAWRLLQEAVVTYCESPIGTVAANDPGDKQPLNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIKLIMNLCLADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFHIREYYWVDMKKINEIYRYKTEEYSTDATNKFNIYPEQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLGTPKQNESILNLIEAKWDDLVGHMPLKICYPALESEDWRIIT*******

****NL*GNSTMKLSGRFLIPCRNASFSAFIV***********************NQIQAHPYKISGFQRILKDTQKPLCVFGPSCG**********************A*R*AS********************************************************************************WRLLQEAVVTYCESPIGTVAANDPGDKQPLNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIKLIMNLCLADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFHIREYYWVDMKKINEIYRYKTEEYSTDATNKFNIYPEQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLGTPKQNESILNLIEAKWDDLVGHMPLKICYPALESEDWRIITGSD****

*NSINLLGNSTMKLSGRFLIPCRNASFSAFIVIKHPNHHCLSNKSSTFCFKFDQINQIQAHPYKISGFQRILKDTQKPLCVFGPSCGQIRVNSRPFSVVSTKSRGLYLVASRVASNVSSFSTSVETRVNDGNFERIYVQNGLNVKPLVVERIDKD*********************************TEIEKEAWRLLQEAVVTYCESPIGTVAANDPGDKQPLNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIKLIMNLCLADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFHIREYYWVDMKKINEIYRYKTEEYSTDATNKFNIYPEQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLGTPKQNESILNLIEAKWDDLVGHMPLKICYPALESEDWRIITGSDP***

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		553
375300672		682	neutral/alkaline invertase [Manihot escu	0.972	0.788	0.743	0.0
255542946		685	beta-fructofuranosidase, putative [Ricin	0.987	0.797	0.741	0.0
449490800		601	PREDICTED: uncharacterized LOC101218389	0.837	0.770	0.831	0.0
359487679		673	PREDICTED: uncharacterized protein LOC10	0.980	0.805	0.748	0.0
163913884		674	putative neutral invertase [Vitis vinife	0.980	0.804	0.748	0.0
449454129		589	PREDICTED: uncharacterized protein LOC10	0.799	0.750	0.853	0.0
163913886		674	putative neutral invertase [Vitis vinife	0.980	0.804	0.746	0.0
296089802		647	unnamed protein product [Vitis vinifera]	0.942	0.805	0.738	0.0
153850908		673	neutral invertase [Vitis vinifera]	0.981	0.806	0.720	0.0
147773544		673	hypothetical protein VITISV_029106 [Viti	0.981	0.806	0.718	0.0

>gi\|375300672\|gb\|AFA46813.1\| neutral/alkaline invertase [Manihot esculenta]	Back alignment and taxonomy information

 Score =  837 bits (2162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/573 (74%), Positives = 465/573 (81%), Gaps = 35/573 (6%)

Query: 1   MNSINLLGNSTMKLSGRFLIPCRNASFSAFIVIKHPNHHCLSNKSSTFCFKFDQINQIQA 60
           M ++  L NSTMK S RFLI  R      F   K+  HH L+   S     FD   Q   
Sbjct: 1   MATLIFLSNSTMKPSCRFLITRRTPGI--FGSAKY--HHTLTGDISRNEISFDHNKQFSE 56

Query: 61  HPYKISGFQRILKDTQKPLCV----FGP-------SCGQIRVNSRPFSVVSTKSRGLYLV 109
           +P+   GF+ I+  TQK  C+    FGP       SCG  R   R        SRG+ +V
Sbjct: 57  YPFGFFGFRSIINSTQKIFCIPIANFGPPRLVSGSSCGD-RTRRR-------ASRGVSVV 108

Query: 110 ASRVASNVSSFSTSVETRVNDGNFERIYVQNGLNVKPLVVERIDKDENIVGQEESCVEV- 168
           AS VAS V  +STSVETRVND NFERIYV NG+ VKPLVVE+IDKDE+++G+  S + V 
Sbjct: 109 AS-VASEVKEYSTSVETRVNDKNFERIYVHNGIGVKPLVVEKIDKDEDVLGEAASRIGVV 167

Query: 169 --NDDEKVGKDNLEGVR------TKREETEIEKEAWRLLQEAVVTYCESPIGTVAANDPG 220
             ++ EKV  +NLEGV+      + REE+EIEKEAW+LL +A+VTYC SP+GTVAAND G
Sbjct: 168 VPDEGEKVNTENLEGVKGVEIGNSWREESEIEKEAWKLLNDAIVTYCGSPVGTVAANDQG 227

Query: 221 DKQPLNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPA 280
           DKQPLNYDQVFIRDFVPSALAFLL+GEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPA
Sbjct: 228 DKQPLNYDQVFIRDFVPSALAFLLRGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPA 287

Query: 281 SFKVRNVPLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVD 340
           SFKVR VPL+ NK EEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGD  LQERVD
Sbjct: 288 SFKVRTVPLDGNKSEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDNTLQERVD 347

Query: 341 VQTGIKLIMNLCLADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYTALRCSREML 400
           VQ GIKLI+NLCL DGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFY+ALRCSREML
Sbjct: 348 VQIGIKLILNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYSALRCSREML 407

Query: 401 TVSDGSGSNNLVRAINNRLSALSFHIREYYWVDMKKINEIYRYKTEEYSTDATNKFNIYP 460
           TV+D  GS NLVR INNRLSALSFHIREYYWVD+KKINEIYRYKTEEYS DATNKFNIYP
Sbjct: 408 TVND--GSKNLVRTINNRLSALSFHIREYYWVDIKKINEIYRYKTEEYSMDATNKFNIYP 465

Query: 461 EQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLGTPKQNESILNLIEAK 520
           EQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWS++SSLGTPKQN++ILNLIEAK
Sbjct: 466 EQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSVISSLGTPKQNKAILNLIEAK 525

Query: 521 WDDLVGHMPLKICYPALESEDWRIITGSDPKNT 553
           WDDLVG MPLKICYPALE EDWRIITGSDPKNT
Sbjct: 526 WDDLVGRMPLKICYPALEDEDWRIITGSDPKNT 558

Source: Manihot esculenta

Species: Manihot esculenta

Genus: Manihot

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255542946\|ref\|XP_002512536.1\| beta-fructofuranosidase, putative [Ricinus communis] gi\|223548497\|gb\|EEF49988.1\| beta-fructofuranosidase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449490800\|ref\|XP_004158710.1\| PREDICTED: uncharacterized LOC101218389 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|359487679\|ref\|XP_002277312.2\| PREDICTED: uncharacterized protein LOC100254513 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|163913884\|emb\|CAP59645.1\| putative neutral invertase [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449454129\|ref\|XP_004144808.1\| PREDICTED: uncharacterized protein LOC101218389 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|163913886\|emb\|CAP59646.1\| putative neutral invertase [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296089802\|emb\|CBI39621.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|153850908\|gb\|ABS52644.1\| neutral invertase [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147773544\|emb\|CAN63178.1\| hypothetical protein VITISV_029106 [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		553
TAIR\|locus:2074434		659	INVH "invertase H" [Arabidopsi	0.781	0.655	0.761	5.9e-187
TAIR\|locus:2027600		616	A/N-InvA "alkaline/neutral inv	0.703	0.631	0.815	1.6e-186
TAIR\|locus:2084329		664	A/N-InvC "alkaline/neutral inv	0.967	0.805	0.627	8.3e-177
TAIR\|locus:2171112		617	INV-E "alkaline/neutral invert	0.645	0.578	0.778	2.4e-156
TAIR\|locus:2116870		571	A/N-InvB "alkaline/neutral inv	0.638	0.618	0.590	4.2e-118
TAIR\|locus:2133737		558	CINV2 "cytosolic invertase 2"	0.640	0.634	0.584	2.7e-116
TAIR\|locus:2014676		551	CINV1 "cytosolic invertase 1"	0.640	0.642	0.587	2.2e-114
TAIR\|locus:2016064		499	A/N-InvF "alkaline/neutral inv	0.640	0.709	0.576	1.2e-113
TAIR\|locus:2199690		534	A/N-InvD "alkaline/neutral inv	0.640	0.662	0.571	4.1e-113

TAIR\|locus:2074434 INVH "invertase H" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1783 (632.7 bits), Expect = 5.9e-187, Sum P(2) = 5.9e-187
 Identities = 341/448 (76%), Positives = 381/448 (85%)

Query:   109 VASRVASNVSSFSTSVETRVNDGNFERIYVQNGLNVKPLVVERIDKDENIVGQEESCVEV 168
             V ++V S   S S S  T  ND   ++IY +NGLNVKPLVVER+ +DE     EE+   V
Sbjct:   101 VTAQVVSEARSHSAST-TCANDTTLDQIYTKNGLNVKPLVVERLKRDEK---DEEA---V 153

Query:   169 NDDEK-VGKDNLEGVXXXXXXXXXXXXAWRLLQEAVVTYCESPIGTVAANDPGDKQPLNY 227
             N+DE+ V +D  EGV            AWRLL++++VTYC+SP+GTVAA DP D  P NY
Sbjct:   154 NEDEEGVKRDGFEGVKCNDVEEE----AWRLLRDSIVTYCDSPVGTVAAKDPTDTTPSNY 209

Query:   228 DQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNV 287
             DQVFIRDFVPSALAFLLKGE EIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVR +
Sbjct:   210 DQVFIRDFVPSALAFLLKGESEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTL 269

Query:   288 PLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIKL 347
             PLE +KFEEVLDPDFGE+AIGRVAPVDSGLWWIILLRAYGKITGDY+LQER+DVQTGIK+
Sbjct:   270 PLEEDKFEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKITGDYSLQERIDVQTGIKM 329

Query:   348 IMNLCLADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYTALRCSREMLTVSDGSG 407
             I NLCLADGFDMFP+LLVTDGSCMIDRRMGIHGHPLEIQALFY+ALR SREM+TV+D S 
Sbjct:   330 IANLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALRSSREMITVNDSS- 388

Query:   408 SNNLVRAINNRLSALSFHIREYYWVDMKKINEIYRYKTEEYSTDATNKFNIYPEQIPSWL 467
               N+++ I+NRLSALSFHIRE YWVD  KINEIYRYKTEEYS DATNKFNIYPEQ+  WL
Sbjct:   389 -KNIIKTISNRLSALSFHIRENYWVDKNKINEIYRYKTEEYSMDATNKFNIYPEQVSPWL 447

Query:   468 MDWIPE--EGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLGTPKQNESILNLIEAKWDDLV 525
             MDW+PE  + G+LIGNLQPAHMDFRFFTLGNLWSI+SSLGTPKQN++ILNL+E KWDDLV
Sbjct:   448 MDWVPESPDSGFLIGNLQPAHMDFRFFTLGNLWSIISSLGTPKQNQAILNLVEEKWDDLV 507

Query:   526 GHMPLKICYPALESEDWRIITGSDPKNT 553
             GHMPLKICYPALES +W IITGSDPKNT
Sbjct:   508 GHMPLKICYPALESSEWHIITGSDPKNT 535

GO:0003824 "catalytic activity" evidence=IEA

GO:0004564 "beta-fructofuranosidase activity" evidence=ISS

TAIR\|locus:2027600 A/N-InvA "alkaline/neutral invertase A" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2084329 A/N-InvC "alkaline/neutral invertase C" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2171112 INV-E "alkaline/neutral invertase E" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2116870 A/N-InvB "alkaline/neutral invertase B" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2133737 CINV2 "cytosolic invertase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2014676 CINV1 "cytosolic invertase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2016064 A/N-InvF "alkaline/neutral invertase F" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2199690 A/N-InvD "alkaline/neutral invertase D" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		553
pfam12899		437	pfam12899, Glyco_hydro_100, Alkaline and neutral i	0.0
PLN02703		618	PLN02703, PLN02703, beta-fructofuranosidase	0.0
PLN03005		550	PLN03005, PLN03005, beta-fructofuranosidase	1e-163
PLN02973		571	PLN02973, PLN02973, beta-fructofuranosidase	1e-160

>gnl\|CDD\|221840 pfam12899, Glyco_hydro_100, Alkaline and neutral invertase	Back alignment and domain information

 Score =  680 bits (1756), Expect = 0.0
 Identities = 247/360 (68%), Positives = 291/360 (80%), Gaps = 6/360 (1%)

Query: 194 EAWRLLQEAVVTYCESPIGTVAANDPGDKQPLNYDQVFIRDFVPSALAFLLKGEGEIVRN 253
           EAW LL++++V Y   P+GTVAA DP  +  LNYDQ FIRDFVPSALAFLLKG  EIVRN
Sbjct: 1   EAWELLEKSLVYYQGRPVGTVAALDPSAEDALNYDQCFIRDFVPSALAFLLKGRPEIVRN 60

Query: 254 FLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGRVAPV 313
           FLL TLQLQS EKTVDC+ PG+G+MPASFKV +   E    EE L  DFGE AIGRVAPV
Sbjct: 61  FLLETLQLQSQEKTVDCFEPGRGVMPASFKVLHDKDE----EETLIADFGERAIGRVAPV 116

Query: 314 DSGLWWIILLRAYGKITGDYALQERVDVQTGIKLIMNLCLADGFDMFPSLLVTDGSCMID 373
           DSGLWWIILLRAY K TGDY+  E  DVQ GI+LI++LCL+D FDMFP+LLV DG+ MID
Sbjct: 117 DSGLWWIILLRAYVKATGDYSFAESPDVQRGIRLILDLCLSDRFDMFPTLLVPDGAFMID 176

Query: 374 RRMGIHGHPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFHIREYYWVD 433
           RRMG++GHPLEIQALFY ALRC+RE+L   +     +L+  I+NRL AL FHIREYYW+D
Sbjct: 177 RRMGVYGHPLEIQALFYGALRCARELLEPDEDGK--DLIERIDNRLRALRFHIREYYWLD 234

Query: 434 MKKINEIYRYKTEEYSTDATNKFNIYPEQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFT 493
           + ++NEIYRYKTEEY  DA NKFNIYPE IP WL DW+PE GGYLIGNL P  MDFRFF+
Sbjct: 235 LDRLNEIYRYKTEEYGDDAVNKFNIYPESIPDWLFDWLPERGGYLIGNLGPGRMDFRFFS 294

Query: 494 LGNLWSIVSSLGTPKQNESILNLIEAKWDDLVGHMPLKICYPALESEDWRIITGSDPKNT 553
           LGNL +I+SSL T +Q+++I++LIE +WDDL+G MP+KICYPALE E+WRI+TG DPKNT
Sbjct: 295 LGNLLAILSSLATEEQSQAIMDLIEERWDDLIGEMPMKICYPALEGEEWRIVTGCDPKNT 354

This is a family of bacterial and plant alkaline and neutral invertases, EC:3.2.1.26, previously known as Invertase_neut pfam04853. Length = 437

>gnl\|CDD\|178306 PLN02703, PLN02703, beta-fructofuranosidase	Back alignment and domain information

>gnl\|CDD\|178582 PLN03005, PLN03005, beta-fructofuranosidase	Back alignment and domain information

>gnl\|CDD\|178556 PLN02973, PLN02973, beta-fructofuranosidase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		553
PF12899		436	Glyco_hydro_100: Alkaline and neutral invertase; I	100.0
PLN03005		550	beta-fructofuranosidase	100.0
PLN02973		571	beta-fructofuranosidase	100.0
PLN02703		618	beta-fructofuranosidase	100.0
PF06202		370	GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR	99.67
TIGR01561		575	gde_arch glycogen debranching enzyme, archaeal typ	99.53
TIGR01577		616	oligosac_amyl oligosaccharide amylase. The name of	99.05
COG3408		641	GDB1 Glycogen debranching enzyme [Carbohydrate tra	99.04
TIGR01531		1464	glyc_debranch glycogen debranching enzymye. glycog	98.72
PF05592		509	Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; Int	98.37
PF04685		365	DUF608: Protein of unknown function, DUF608; Inter	98.31
PRK10137		786	alpha-glucosidase; Provisional	97.32
TIGR01535		648	glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc	96.12
PF00723		448	Glyco_hydro_15: Glycosyl hydrolases family 15; Int	94.63
PF06824		424	DUF1237: Protein of unknown function (DUF1237); In	94.55
COG3459		1056	Cellobiose phosphorylase [Carbohydrate transport a	93.15
COG3387		612	SGA1 Glucoamylase and related glycosyl hydrolases	93.05
PLN02567		554	alpha,alpha-trehalase	91.63
PRK13271		569	treA trehalase; Provisional	88.29
COG4354		721	Predicted bile acid beta-glucosidase [Carbohydrate	84.62
PRK13270		549	treF trehalase; Provisional	83.33

>PF12899 Glyco_hydro_100: Alkaline and neutral invertase; InterPro: IPR024746 This is a family of endo-alpha-N-acetylgalactosaminidases	Back alignment and domain information

Probab=100.00  E-value=7.4e-173  Score=1320.29  Aligned_cols=353  Identities=71%  Similarity=1.266  Sum_probs=347.4

Q ss_pred             HHHHHHHHhhhhhcCceeEEEeecCCCCCCCCCCCceeeccchHHHHHHHhcCChHHHHHHHHhhhhhchhhhhccccCC
Q 008801          194 EAWRLLQEAVVTYCESPIGTVAANDPGDKQPLNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSP  273 (553)
Q Consensus       194 eAwe~l~~siV~y~g~PvGTvAA~D~~~~~alNYdQVFiRDfVPSaLafLl~Ge~eIVRnFL~~tLqLQs~ek~ld~~~~  273 (553)
                      ||||+|++|+|+|||+|||||||+||+.+++|||+||||||||||||+|||+||+|||||||++||+|||+||++|||+|
T Consensus         1 ~a~~~l~~s~v~~~g~pvGtvAa~d~~~~~~lNY~qvF~RDfvps~l~fL~~g~~eIVrnFL~~tl~Lq~~~~~~d~~~~   80 (436)
T PF12899_consen    1 EAWELLERSIVYYQGQPVGTVAALDPSAEEALNYDQVFVRDFVPSALAFLMKGEPEIVRNFLLETLQLQSWEKQVDCFKP   80 (436)
T ss_pred             ChHHHHhhheEeeCCceeeeeeecCCcccccccccceEeecChHHHHHHHHcCCHHHHHHHHHHHHhhhhhhhhcccccc
Confidence            69999999999999999999999999877899999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccceEEEeeccCCCCCccccccCCccccccccccccccccHHHHHHHHHhhccccchhccchhhHHHHHHHHHHhh
Q 008801          274 GQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIKLIMNLCL  353 (553)
Q Consensus       274 g~GlmPASFkV~~~~~~~~~~ee~l~aDFGe~AIGRVapVDSgLWWIILlraY~k~TGD~sla~~pevQrGirlIL~lCL  353 (553)
                      |+|+|||||||.+++     ++|+|+|||||+|||||||||||||||||||||+|+|||++|+++||||+||||||+|||
T Consensus        81 g~G~mPaSFkv~~~~-----~~e~l~aDfGe~AIgRv~pVDs~~WWiillraY~k~tgD~s~~~~~~~Q~gi~liL~lcL  155 (436)
T PF12899_consen   81 GRGVMPASFKVLHEN-----EEETLIADFGERAIGRVAPVDSGLWWIILLRAYVKATGDYSLAESPEVQRGIRLILDLCL  155 (436)
T ss_pred             CCCcccceEEEecCC-----CCceEecCcchhhhccccCcccccHHHHHHHHHHHHhcchhhhhcHHHHHHHHHHHHHHc
Confidence            999999999998643     789999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCceeecCCccccccccccCCCchhHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHhhhhhcccc
Q 008801          354 ADGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFHIREYYWVD  433 (553)
Q Consensus       354 ~~~Fd~fPtLlVpDg~~MIDRRMgv~G~PLEIQaLfY~ALRca~eLL~~~~~~~~~~~~~~I~~RL~aLs~hir~yYWlD  433 (553)
                      +++||||||||||||||||||||||||||||||||||+|||||++||+++++  +++++++|++||++|++|||+|||||
T Consensus       156 ~~~Fd~~PtLlvpDg~~MiDRrMgv~G~PlEiQ~Lf~~aLr~a~~ll~~~~~--~~~~~~~i~~rl~~L~~h~r~~yWld  233 (436)
T PF12899_consen  156 ADGFDMFPTLLVPDGACMIDRRMGVYGHPLEIQALFYMALRCARELLKPDEE--GKDLIERIDKRLHALSFHIREYYWLD  233 (436)
T ss_pred             ccccCCCceEEecCCceeecccccccCCcchHHHHHHHHHHHHHHhcCcccc--hhHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999999999999998766  89999999999999999999999999


Q ss_pred             hhhhhhhhccCCcccchhhhcccCcCCCCcchhhhhccCCCCCeeeeeccCCcccchhhhhhhHHHHHhcCCCHHHHHHH
Q 008801          434 MKKINEIYRYKTEEYSTDATNKFNIYPEQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLGTPKQNESI  513 (553)
Q Consensus       434 ~~~ln~IyRykTEeYs~~a~NkFNI~pesIP~Wl~dWlp~~GGYliGNl~P~rmDFRfFsLGNllAILssLat~~Qs~aI  513 (553)
                      +++||+||||||||||++|+|||||||||||+||+||||++||||+|||+|+|||||||+|||||||||||||++|+++|
T Consensus       234 ~~~ln~iyr~~teey~~~a~N~fNi~p~~ip~wl~dwlp~~gGY~ignv~P~~~dfRff~lGNlLAiLsgLat~~qa~~I  313 (436)
T PF12899_consen  234 LKRLNEIYRYKTEEYGHTAVNKFNIYPDSIPDWLFDWLPEKGGYFIGNVSPARMDFRFFSLGNLLAILSGLATPEQAEAI  313 (436)
T ss_pred             HHHHHHHHhccHhhhhhhhhhcccCCcccchHHHHHhcccCCceeEeeccccccceeehhhhhHHHHHhcCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcCCCceecccCCCCCCceeeeCCCCCCC
Q 008801          514 LNLIEAKWDDLVGHMPLKICYPALESEDWRIITGSDPKNT  553 (553)
Q Consensus       514 m~Lie~rW~dLvg~MPlKICyPAle~~EWRiiTG~DPKNt  553 (553)
                      |++||++|++|+|+||||||||||+++|||++|||||||+
T Consensus       314 ~~lIe~~~~~L~g~mPlki~yPale~~eWri~tg~dpKN~  353 (436)
T PF12899_consen  314 MDLIEERWEDLVGPMPLKICYPALEGEEWRIYTGCDPKNT  353 (436)
T ss_pred             HHHHHHHHhhhccccchhhccCCCCCCCCccccCcCcCcc
Confidence            9999999999999999999999999999999999999996

This is a unique enzyme that hydrolyses core 1-type O-glycan from glycoproteins. The proteins are produced in the gut-flora bacteria from Actinobacteria and Firmicutes [].; GO: 0033926 glycopeptide alpha-N-acetylgalactosaminidase activity

>PLN03005 beta-fructofuranosidase	Back alignment and domain information

>PLN02973 beta-fructofuranosidase	Back alignment and domain information

>PLN02703 beta-fructofuranosidase	Back alignment and domain information

>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT	Back alignment and domain information

>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative	Back alignment and domain information

>TIGR01577 oligosac_amyl oligosaccharide amylase	Back alignment and domain information

>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR01531 glyc_debranch glycogen debranching enzymye	Back alignment and domain information

>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes	Back alignment and domain information

>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []	Back alignment and domain information

>PRK10137 alpha-glucosidase; Provisional	Back alignment and domain information

>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase	Back alignment and domain information

>PF00723 Glyco_hydro_15: Glycosyl hydrolases family 15; InterPro: IPR011613 O-Glycosyl hydrolases 3	Back alignment and domain information

>PF06824 DUF1237: Protein of unknown function (DUF1237); InterPro: IPR008313 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function	Back alignment and domain information

>COG3459 Cellobiose phosphorylase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	Back alignment and domain information

>PLN02567 alpha,alpha-trehalase	Back alignment and domain information

>PRK13271 treA trehalase; Provisional	Back alignment and domain information

>COG4354 Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK13270 treF trehalase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		553
1v7w_A		807	Chitobiose phosphorylase; beta-sandwich, (alpha/al	2e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A* Length = 807	Back alignment and structure

 Score = 59.0 bits (142), Expect = 2e-09
 Identities = 38/321 (11%), Positives = 86/321 (26%), Gaps = 50/321 (15%)

Query: 233 RDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESN 292
           RD    A++       E+ R  ++  L+ Q                P      +V    +
Sbjct: 349 RDTAQDAISVPH-ANPEMTRKRIVDLLRGQVKAGYGLHLFDPDWFDPEK---EDVAPSKS 404

Query: 293 KFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYA-LQERVDVQTGIKLIMNL 351
                   D  +    +    D  LW I  +  Y   TG+ +   + +    G +  +  
Sbjct: 405 PTVVPTPSDEDKIHGIKDTCSDDHLWLIPTICKYVMETGETSFFDQMIPYADGGEASVYE 464

Query: 352 CLADGFDMFPSLLVTDGSCMI--------DRRMGIHGHPLEIQALFYTALRCSREMLTVS 403
            +    D   S      + +         D      G    +  L + AL   +E + ++
Sbjct: 465 HMKAALD--FSAEYVGQTGICKGLRADWNDCLNLGGGESSMVSFLHFWAL---QEFIDLA 519

Query: 404 DGSGSNNLVRAINNRLSALSFHIREYYWVDMKKINEIYRYKTEEYSTDATNKFNIYPEQI 463
              G +  V       + +      + W D                              
Sbjct: 520 KFLGKDQDVNTYTEMAANVREACETHLWDDEGG--------------------------- 552

Query: 464 PSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLGTPKQNESILNLIEAKWDD 523
             W +  + + G  +         + R     N  +++S L + ++ E  ++ ++     
Sbjct: 553 --WYIRGLTKNGDKIGT---AQQQEGRVHLESNTLAVLSGLASQERGEQAMDAVDEHLFS 607

Query: 524 LVGHMPLKICYPALESEDWRI 544
             G       +     +   +
Sbjct: 608 PYGLHLNAPSFSTPNDDIGFV 628

PyMOL of 1v7w

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		553
1v7w_A		807	Chitobiose phosphorylase; beta-sandwich, (alpha/al	99.74
3qde_A		811	Cellobiose phosphorylase; cellulase, phosphate, tr	99.59
3rrs_A		822	Cellobiose phosphorylase; GH94, alpha barrel, disa	99.54
3c68_A		761	Uncharacterized protein YGJK; GH63, processing alp	99.13
2okx_A		956	Rhamnosidase B; alpha barrel, glycoside hydrolase	99.12
3cih_A		739	Putative alpha-rhamnosidase; structural genomics,	98.99
2z07_A		420	Putative uncharacterized protein TTHA0978; unchara	98.6
2jg0_A		535	Periplasmic trehalase; family 37, hydrolase, inhib	98.55
1lf6_A		684	Glucoamylase; (alpha/alpha) barrel, 6 alpha-helica	98.09
1ulv_A		1020	Glucodextranase; GH family 15, (alpha-alpha)6-barr	98.08
3qry_B		426	Putative uncharacterized protein; alpha-alpha six	96.75
3p2c_A		463	Putative glycosyl hydrolase; structural genomics,	96.58
3qt9_A		427	Putative uncharacterized protein CPE0426; alpha-al	96.42
2p0v_A		489	Hypothetical protein BT3781; alpha-beta protein, s	96.02
2vn4_A		599	Glucoamylase; hydrolase, carbohydrate binding, gly	95.18
2fba_A		492	Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hy	95.08
1gai_A		472	Glucoamylase-471; hydrolase, glycosidase, polysacc	94.57

>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*	Back alignment and structure

Probab=99.74  E-value=1.4e-17  Score=177.73  Aligned_cols=248  Identities=17%  Similarity=0.212  Sum_probs=166.5

Q ss_pred             ccchHHHHHHHhcCChHHHHHHHHhhhhhchhhhhccccCCCCC-cccceEEEeeccCCCCCcc------ccccCCcccc
Q 008801          233 RDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQG-LMPASFKVRNVPLESNKFE------EVLDPDFGES  305 (553)
Q Consensus       233 RDfVPSaLafLl~Ge~eIVRnFL~~tLqLQs~ek~ld~~~~g~G-lmPASFkV~~~~~~~~~~e------e~l~aDFGe~  305 (553)
                      ||...++++++ .|++|++|++|......|..          .| ++|.-|....++   +.++      .+++.+.|+.
T Consensus       349 RD~~~~~~~l~-~~~p~~ar~~l~~~~~~Q~~----------~G~~~p~~~p~~~~~---~~g~~~~~~~~~~~g~~~~~  414 (807)
T 1v7w_A          349 RDTAQDAISVP-HANPEMTRKRIVDLLRGQVK----------AGYGLHLFDPDWFDP---EKEDVAPSKSPTVVPTPSDE  414 (807)
T ss_dssp             HHHHHHTTSCT-TTCHHHHHHHHHHHHHTBCT----------TSCBCSEECGGGGCC-----------------------
T ss_pred             hHHhHHHHHHh-hcCHHHHHHHHHHHHhcccc----------CCCcceeeeeccccc---cccccCCccccccccCCCcc
Confidence            99999999966 99999999999988888854          34 455544110111   0011      1123335554


Q ss_pred             c--cc-cccccccccHHHHHHHHHhhccccchhccc--hh-----------hHHHHHHHHHHhhhcCCCCCCceeecCCc
Q 008801          306 A--IG-RVAPVDSGLWWIILLRAYGKITGDYALQER--VD-----------VQTGIKLIMNLCLADGFDMFPSLLVTDGS  369 (553)
Q Consensus       306 A--IG-RVapVDSgLWWIILlraY~k~TGD~sla~~--pe-----------vQrGirlIL~lCL~~~Fd~fPtLlVpDg~  369 (553)
                      +  +| +..-.|..+|||++++.|.+.|||.+|++.  |-           ++++++++++.+-.   +..|.....|=.
T Consensus       415 ~~~~g~~~~~~D~~lw~~~~~~~y~~~tGD~~~L~e~~p~~~~~~~~v~e~~~~~~~~~~~~~~~---~GL~~~~~~DW~  491 (807)
T 1v7w_A          415 DKIHGIKDTCSDDHLWLIPTICKYVMETGETSFFDQMIPYADGGEASVYEHMKAALDFSAEYVGQ---TGICKGLRADWN  491 (807)
T ss_dssp             --CCCGGGCBSSGGGGHHHHHHHHHHHHCCGGGGGCEEECTTSCEEEHHHHHHHHHHHHHHSBCT---TSCBEEETCSSS
T ss_pred             hhhcCCCCCccchhhHHHHHHHHHHHHhCCHHHHhcccccccCCcchHHHHHHHHHHHHHhcCCC---CCCcccCCCCCC
Confidence            4  43 334449999999999999999999999996  53           99999988875432   444443333321


Q ss_pred             -cccccccccCCCchhHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHhhhhhcccchhhhhhhhccCCccc
Q 008801          370 -CMIDRRMGIHGHPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFHIREYYWVDMKKINEIYRYKTEEY  448 (553)
Q Consensus       370 -~MIDRRMgv~G~PLEIQaLfY~ALRca~eLL~~~~~~~~~~~~~~I~~RL~aLs~hir~yYWlD~~~ln~IyRykTEeY  448 (553)
                       +| +  +| .|.++++|+|+|.||+++.+|.+...+   .+.++...++...|+..|+++||-+-.   ..|+  .--|
T Consensus       492 D~~-~--~~-~g~~v~~~a~~y~al~~~a~la~~lG~---~~~a~~~~~~A~~lk~~~~~~~w~~~~---~~f~--~~~~  559 (807)
T 1v7w_A          492 DCL-N--LG-GGESSMVSFLHFWALQEFIDLAKFLGK---DQDVNTYTEMAANVREACETHLWDDEG---GWYI--RGLT  559 (807)
T ss_dssp             TTC-C--CE-EEEEHHHHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHHSEETTT---TEEC--CEEC
T ss_pred             CcC-C--CC-CCeehhHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHHhccCCCC---Ceee--eeec
Confidence             22 3  35 899999999999999999999987533   456677788888889999999997530   0010  0000


Q ss_pred             chhhhcccCcCCCCcchhhhhccCCCCCeeeeeccCCcccchhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCC
Q 008801          449 STDATNKFNIYPEQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLGTPKQNESILNLIEAKWDDLVGHM  528 (553)
Q Consensus       449 s~~a~NkFNI~pesIP~Wl~dWlp~~GGYliGNl~P~rmDFRfFsLGNllAILssLat~~Qs~aIm~Lie~rW~dLvg~M  528 (553)
                                              ..| -.+|..  ...+.+.++.+|.+|+++++++++|++++|+.|++   .|..+.
T Consensus       560 ------------------------~d~-~~~g~~--~~~~~~~~~~~~~~al~~g~~~~e~a~~~l~~v~~---~L~~~~  609 (807)
T 1v7w_A          560 ------------------------KNG-DKIGTA--QQQEGRVHLESNTLAVLSGLASQERGEQAMDAVDE---HLFSPY  609 (807)
T ss_dssp             ------------------------TTS-CEESCT--TCSSCCEEHHHHHHHHHTTCSCHHHHHHHHHHHHH---HHEETT
T ss_pred             ------------------------cCC-CCcCCc--cCCCCcCcccchHHHHhhCCCCHHHHHHHHHHHHH---hcCCCC
Confidence                                    000 011111  11345788999999999999999999999999954   566677


Q ss_pred             CceecccCCCC
Q 008801          529 PLKICYPALES  539 (553)
Q Consensus       529 PlKICyPAle~  539 (553)
                      .++.++|+...
T Consensus       610 G~~~~~p~~~~  620 (807)
T 1v7w_A          610 GLHLNAPSFST  620 (807)
T ss_dssp             EECSEESCCCS
T ss_pred             ceeecCCcccc
Confidence            79999998764

PyMOL of 1v7w

>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}	Back alignment and structure

>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*	Back alignment and structure

>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}	Back alignment and structure

>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482}	Back alignment and structure

>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}	Back alignment and structure

>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A*	Back alignment and structure

>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*	Back alignment and structure

>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*	Back alignment and structure

>3qry_B Putative uncharacterized protein; alpha-alpha six fold, glycoside hydrolase, mannosidase, 1- deoxymannojirimycin, hydrolase; HET: DMJ; 1.75A {Streptococcus pneumoniae} SCOP: a.102.1.0 PDB: 3qpf_A* 3qsp_A*	Back alignment and structure

>3p2c_A Putative glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE PGE; 1.60A {Bacteroides ovatus} SCOP: a.102.1.8 PDB: 3on6_A*	Back alignment and structure

>3qt9_A Putative uncharacterized protein CPE0426; alpha-alpha six fold, glycoside hydrolase, mannosidase, HYDR; HET: YDR; 2.05A {Clostridium perfringens} SCOP: a.102.1.8 PDB: 3qt3_A* 2nvp_A	Back alignment and structure

>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8	Back alignment and structure

>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*	Back alignment and structure

>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A	Back alignment and structure

>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		553
d1v7wa1		531	a.102.1.4 (A:271-801) Chitobiose phosphorylase Chb	1e-11

>d1v7wa1 a.102.1.4 (A:271-801) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]} Length = 531	Back information, alignment and structure


class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Glycosyltransferase family 36 C-terminal domain
domain: Chitobiose phosphorylase ChbP
species: Vibrio proteolyticus [TaxId: 671]

 Score = 64.9 bits (157), Expect = 1e-11
 Identities = 37/341 (10%), Positives = 83/341 (24%), Gaps = 46/341 (13%)

Query: 211 IGTVAANDPGDKQPLNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDC 270
              V +      +      +  RD    A++       E+ R  ++  L+ Q        
Sbjct: 57  TCVVWSRFASFIEVGGRTGLGYRDTAQDAISVPH-ANPEMTRKRIVDLLRGQVKAGYGLH 115

Query: 271 YSPGQGLMPASFKVRNVPLESNKFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKIT 330
                   P      +V    +        D  +    +    D  LW I  +  Y   T
Sbjct: 116 LFDPDWFDPEK---EDVAPSKSPTVVPTPSDEDKIHGIKDTCSDDHLWLIPTICKYVMET 172

Query: 331 GDYA-LQERVDVQTGIKLIMNLCLADGFDMFPSLLVTDGSCMI------DRRMGIHGHPL 383
           G+ +   + +    G +  +   +    D     +   G C        D      G   
Sbjct: 173 GETSFFDQMIPYADGGEASVYEHMKAALDFSAEYVGQTGICKGLRADWNDCLNLGGGESS 232

Query: 384 EIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFHIREYYWVDMKKINEIYRY 443
            +  L + AL+                               I    ++   +    Y  
Sbjct: 233 MVSFLHFWALQ-----------------------------EFIDLAKFLGKDQDVNTYTE 263

Query: 444 KTEEYSTDATNKFNIYPEQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSIVSS 503
                                 W +  + + G  +         + R     N  +++S 
Sbjct: 264 MAANVREACETHLWDDEGG---WYIRGLTKNGDKI---GTAQQQEGRVHLESNTLAVLSG 317

Query: 504 LGTPKQNESILNLIEAKWDDLVGHMPLKICYPALESEDWRI 544
           L + ++ E  ++ ++       G       +     +   +
Sbjct: 318 LASQERGEQAMDAVDEHLFSPYGLHLNAPSFSTPNDDIGFV 358

PyMOL of d1v7wa1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		553
d1v7wa1		531	Chitobiose phosphorylase ChbP {Vibrio proteolyticu	99.48
d1lf6a1		397	Bacterial glucoamylase, C-terminal domain {Thermoa	99.07
d1ulva1		413	Glucodextranase, domain A {Arthrobacter globiformi	98.63
d2jg0a1		511	Periplasmic trehalase TreA {Escherichia coli [TaxI	97.27
d2p0va1		443	Hypothetical protein BT3781 {Bacteroides thetaiota	94.86
d2nvpa1		426	Hypothetical protein CPF0428 {Clostridium perfring	92.85
d2fbaa1		492	Glucoamylase {Yeast (Saccharomycopsis fibuligera)	89.83
d1gaia_		472	Glucoamylase {Aspergillus awamori, variant x100 [T	83.65

>d1v7wa1 a.102.1.4 (A:271-801) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Glycosyltransferase family 36 C-terminal domain
domain: Chitobiose phosphorylase ChbP
species: Vibrio proteolyticus [TaxId: 671]

Probab=99.48  E-value=1.1e-14  Score=140.73  Aligned_cols=271  Identities=15%  Similarity=0.097  Sum_probs=166.7

Q ss_pred             CCCCCceeeccchHHHHHHHhcCChHHHHHHHHhhhhhchhhhhccccCCCCCcccceEEEeeccCCCCC-ccccccCCc
Q 008801          224 PLNYDQVFIRDFVPSALAFLLKGEGEIVRNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRNVPLESNK-FEEVLDPDF  302 (553)
Q Consensus       224 alNYdQVFiRDfVPSaLafLl~Ge~eIVRnFL~~tLqLQs~ek~ld~~~~g~GlmPASFkV~~~~~~~~~-~ee~l~aDF  302 (553)
                      .-.|.-.+-||....+++|+ .+.||++|++|.-.++.|..+...-+-....|.++.......    ... .........
T Consensus        70 ~~~~~~~~~rD~~~~~~~~~-~~~pe~Ar~~L~~~~~~q~~~g~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~  144 (531)
T d1v7wa1          70 VGGRTGLGYRDTAQDAISVP-HANPEMTRKRIVDLLRGQVKAGYGLHLFDPDWFDPEKEDVAP----SKSPTVVPTPSDE  144 (531)
T ss_dssp             CSSCCSEEHHHHHHHTTSCT-TTCHHHHHHHHHHHHHTBCTTSCBCSEECGGGGCC------------------------
T ss_pred             CCCCCcEEEcHHHHHHHHHH-hcCHHHHHHHHHHHHhhhhhcccchhhcCCCcCcCCcccccc----cccCcCCCCCccc
Confidence            34566666799999999976 589999999999999988776654444344677777664322    111 111112223


Q ss_pred             cccccccccccccccHHHHHHHHHhhccccchhccc--hhhHHHHHHHH-------HHhhhcCCC-CCCceeecCCcccc
Q 008801          303 GESAIGRVAPVDSGLWWIILLRAYGKITGDYALQER--VDVQTGIKLIM-------NLCLADGFD-MFPSLLVTDGSCMI  372 (553)
Q Consensus       303 Ge~AIGRVapVDSgLWWIILlraY~k~TGD~sla~~--pevQrGirlIL-------~lCL~~~Fd-~fPtLlVpDg~~MI  372 (553)
                      +..+.-+-.-+|..+|++.+++.|.+.|||.+|.+.  |++.++..+++       +.......+ ..+..--.|-..-+
T Consensus       145 ~~~~~~~~~~~d~~~~i~~a~~~Y~~~TgD~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~g~~dw~d~~  224 (531)
T d1v7wa1         145 DKIHGIKDTCSDDHLWLIPTICKYVMETGETSFFDQMIPYADGGEASVYEHMKAALDFSAEYVGQTGICKGLRADWNDCL  224 (531)
T ss_dssp             --CCCGGGCBSSGGGGHHHHHHHHHHHHCCGGGGGCEEECTTSCEEEHHHHHHHHHHHHHHSBCTTSCBEEETCSSSTTC
T ss_pred             cccccccccccccHHHHHHHHHHHHHhhCCHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhheeCCCCCcccCCCcccccc
Confidence            333333455679999999999999999999999975  55433322222       222222111 11111111111111


Q ss_pred             ccccccCCCchhHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHhhhhhcccchhhhhhhhccCCcccchhh
Q 008801          373 DRRMGIHGHPLEIQALFYTALRCSREMLTVSDGSGSNNLVRAINNRLSALSFHIREYYWVDMKKINEIYRYKTEEYSTDA  452 (553)
Q Consensus       373 DRRMgv~G~PLEIQaLfY~ALRca~eLL~~~~~~~~~~~~~~I~~RL~aLs~hir~yYWlD~~~ln~IyRykTEeYs~~a  452 (553)
                      +   .-.|...+.|+++|.||+++.+|.+...+   .+.+..-.+....|+..+++++|.+-..          .|    
T Consensus       225 ~---~~~~~~~~~~~~~~~al~~~~~la~~~g~---~~~a~~~~~~a~~l~~~~~~~~~~~~~~----------~~----  284 (531)
T d1v7wa1         225 N---LGGGESSMVSFLHFWALQEFIDLAKFLGK---DQDVNTYTEMAANVREACETHLWDDEGG----------WY----  284 (531)
T ss_dssp             C---CEEEEEHHHHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHHSEETTTT----------EE----
T ss_pred             c---CCCCccHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHHhcCCcccc----------ce----
Confidence            1   12356799999999999999999987543   4445555555556677788888874211          11    


Q ss_pred             hcccCcCCCCcchhhhhccCCCCCeeeeeccCCcccchhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCcee
Q 008801          453 TNKFNIYPEQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSIVSSLGTPKQNESILNLIEAKWDDLVGHMPLKI  532 (553)
Q Consensus       453 ~NkFNI~pesIP~Wl~dWlp~~GGYliGNl~P~rmDFRfFsLGNllAILssLat~~Qs~aIm~Lie~rW~dLvg~MPlKI  532 (553)
                                     .+++.. .|.-++..  ...|.+++.++|.+++++++++++|++.+++.+.   ..|..+..+..
T Consensus       285 ---------------~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~---~~l~~~~~~~~  343 (531)
T d1v7wa1         285 ---------------IRGLTK-NGDKIGTA--QQQEGRVHLESNTLAVLSGLASQERGEQAMDAVD---EHLFSPYGLHL  343 (531)
T ss_dssp             ---------------CCEECT-TSCEESCT--TCSSCCEEHHHHHHHHHTTCSCHHHHHHHHHHHH---HHHEETTEECS
T ss_pred             ---------------eEEEcC-CCCccccc--CccccccchhhcchhhhcCCCCHHHHHHHHHHHH---HhhcCchhhhc
Confidence                           111111 12222322  2366789999999999999999999999999884   46888888888


Q ss_pred             cccCCCCC
Q 008801          533 CYPALESE  540 (553)
Q Consensus       533 CyPAle~~  540 (553)
                      .+|+....
T Consensus       344 ~~~~~~~~  351 (531)
T d1v7wa1         344 NAPSFSTP  351 (531)
T ss_dssp             EESCCCSC
T ss_pred             cccccccc
Confidence            88887664

PyMOL of d1v7wa1

>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]}	Back information, alignment and structure

>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]}	Back information, alignment and structure

>d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2p0va1 a.102.1.8 (A:39-481) Hypothetical protein BT3781 {Bacteroides thetaiotaomicron [TaxId: 818]}	Back information, alignment and structure

>d2nvpa1 a.102.1.8 (A:2-427) Hypothetical protein CPF0428 {Clostridium perfringens [TaxId: 1502]}	Back information, alignment and structure

>d2fbaa1 a.102.1.1 (A:1-492) Glucoamylase {Yeast (Saccharomycopsis fibuligera) [TaxId: 4944]}	Back information, alignment and structure

>d1gaia_ a.102.1.1 (A:) Glucoamylase {Aspergillus awamori, variant x100 [TaxId: 105351]}	Back information, alignment and structure