Citrus Sinensis ID: 008817

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550--
MSTPVPTVVEETVRPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDAVQRLGVAYHFEKEIEDELEKILDHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVFEKFKNNEGKFKASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSHASPNLAEQINHALKLPLRKALPRLEARYFLDVCSRGDRHDKSLLKFAKLDFNLLQAAHQKEVSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINEELLSPTAVSLPLLERILNLARVCHFMYEDGDRYTQPLLMKDQVALVLKDPVTL
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccHHHHcccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEccccHHHHHHHHHHHccccccHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccc
ccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccHcccHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcHHHHHHHHHHHHHcHcccccccHHHHHHHHHHHHcccccc
mstpvptvveetvrpiagfsptvwgnhflksasdfkAIDATTQELYEALKQEVRMMITATADKIADKLHLIDAVQRLGVAYHFEKEIEDELEKILDHldndniggddfYTLSLSFRLLRQQGVKISCDVFEKFknnegkfkASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSmvshaspnlAEQINHALKLPLRKALPRLEARYFldvcsrgdrhdkSLLKFAKLDFNLLQAAHQKEVSDMTRWWIdldfstklpyaRDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDdtfdaygtYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAkegrssygvKYVKQTMEESIMMYFSEAkwlhegflpkieeyegvalgssgVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHefeqkrghipsaVECYmkqhgvseEEAKKALRIQVDNAWKDINEellsptavsLPLLERILNLARVCHFmyedgdrytqpllmKDQVALVLKDPVTL
mstpvptvveetvrpiagfsptvwGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDAVQRLGVAYHFEKEIEDELEKILDHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVFEKFknnegkfkASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSHASPNLAEQINHALKLPLRKALPRLEARYFLDVCSRGDRHDKSLLKFAKLDFNLLQAAHQKEVSDMTRWWIDLdfstklpyardRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEEslakegrssygvKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINEELLSPTAVSLPLLERILNLARVCHFMYEDGDRYTQPLLMKDQVALVLKDPVTL
MStpvptvveetvRPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDAVQRLGVAYHFekeiedelekildHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVfekfknnegkfkASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSHASPNLAEQINHalklplrkalprlEARYFLDVCSRGDRHDKSLLKFAKLDFNLLQAAHQKEVSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINEELLSPTAVSLPLLERILNLARVCHFMYEDGDRYTQPLLMKDQVALVLKDPVTL
********VEETVRPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDAVQRLGVAYHFEKEIEDELEKILDHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVFEKFKNNEGKFKASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSHASPNLAEQINHALKLPLRKALPRLEARYFLDVCSRGDRHDKSLLKFAKLDFNLLQAAHQKEVSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEE*******SSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGV*****KKALRIQVDNAWKDINEELLSPTAVSLPLLERILNLARVCHFMYEDGDRYTQPLLMKDQVALVL******
******************FSPTVWGNHFLKSASD***********YEALKQEVRMMITATADKIADKLHLIDAVQRLGVAYHFEKEIEDELEKILDHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVFEKFKNNEGKFKASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMV******LAEQINHALKLPLRKALPRLEARYFLDVCSRGDRHDKSLLKFAKLDFNLLQAAHQKEVSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINEELLSPTAVSLPLLERILNLARVCHFMYEDGDRYTQPLLMKDQVALVLKDPVTL
MSTPVPTVVEETVRPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDAVQRLGVAYHFEKEIEDELEKILDHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVFEKFKNNEGKFKASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSHASPNLAEQINHALKLPLRKALPRLEARYFLDVCSRGDRHDKSLLKFAKLDFNLLQAAHQKEVSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINEELLSPTAVSLPLLERILNLARVCHFMYEDGDRYTQPLLMKDQVALVLKDPVTL
***************I*GFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDAVQRLGVAYHFEKEIEDELEKILDHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVFEKFKNNEGKFKASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSHASPNLAEQINHALKLPLRKALPRLEARYFLDVCSRGDRHDKSLLKFAKLDFNLLQAAHQKEVSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINEELLSPTAVSLPLLERILNLARVCHFMYEDGDRYTQPLLMKDQVALVLKDPVTL
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MSTPVPTVVEETVRPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDAVQRLGVAYHFEKEIEDELEKILDHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVFEKFKNNEGKFKASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSHASPNLAEQINHALKLPLRKALPRLEARYFLDVCSRGDRHDKSLLKFAKLDFNLLQAAHQKEVSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINEELLSPTAVSLPLLERILNLARVCHFMYEDGDRYTQPLLMKDQVALVLKDPVTL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query552 2.2.26 [Sep-21-2011]
Q94JS8560 (E)-beta-farnesene syntha N/A no 0.989 0.975 0.674 0.0
Q6Q3H3557 (-)-germacrene D synthase yes no 0.985 0.976 0.549 1e-174
Q6Q3H2556 Valencene synthase OS=Vit no no 0.969 0.962 0.541 1e-167
B5A435559 Sesquiterpene synthase OS N/A no 0.992 0.980 0.508 1e-164
E3W207559 Sesquiterpene synthase OS N/A no 0.992 0.980 0.510 1e-164
F6M8H7562 Probable sesquiterpene sy N/A no 0.972 0.955 0.511 1e-164
F6M8H4559 Probable sesquiterpene sy N/A no 0.990 0.978 0.503 1e-163
E3W208562 Sesquiterpene synthase OS N/A no 0.969 0.951 0.511 1e-162
F6M8H5562 Probable sesquiterpene sy N/A no 0.972 0.955 0.504 1e-161
F6M8H6562 Probable sesquiterpene sy N/A no 0.969 0.951 0.502 1e-160
>sp|Q94JS8|FARS_CITJU (E)-beta-farnesene synthase OS=Citrus junos PE=1 SV=1 Back     alignment and function desciption
 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/563 (67%), Positives = 455/563 (80%), Gaps = 17/563 (3%)

Query: 1   MSTP----VPTVVEETVRPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMM 56
           MS P    V +  EETVRPIA F PT+WGNHFLKSA+D + IDA TQE + ALKQEVR M
Sbjct: 4   MSIPLLAAVSSSTEETVRPIADFHPTLWGNHFLKSAADVETIDAATQEQHAALKQEVRRM 63

Query: 57  ITATADKIADKLHLIDAVQRLGVAYHFEKEIEDELEKILDHLDNDNIGGDDFYTLSLSFR 116
           IT TA+K+A KLH+IDAVQRLGVAYHFEKEIEDEL K+   LD+D     D Y +SL FR
Sbjct: 64  ITTTANKLAQKLHMIDAVQRLGVAYHFEKEIEDELGKVSHDLDSD-----DLYVVSLRFR 118

Query: 117 LLRQQGVKISCDVFEKFKNNEGKFKASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTT 176
           L RQQGVKISCDVF+KFK++EGKFK S+IND++ MLSLYEAA+LAI GEDILDEAIVFTT
Sbjct: 119 LFRQQGVKISCDVFDKFKDDEGKFKESLINDIRGMLSLYEAAYLAIRGEDILDEAIVFTT 178

Query: 177 THLKSMVS-----HASPNLAEQINHALKLPLRKALPRLEARYFLDVCSRGDRHDKSLLKF 231
           THLKS++S     HA+ NLAEQI H+L++PLRKA  RLEARYFLD+ SR D HD++LLKF
Sbjct: 179 THLKSVISISDHSHANSNLAEQIRHSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKF 238

Query: 232 AKLDFNLLQAAHQKEVSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGR 291
           AKLDFN+LQAAHQKE S MTRWW DL F  K+PYARDRI+E Y W+L+G  YEP  AFGR
Sbjct: 239 AKLDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIIETYIWMLLGVSYEPNLAFGR 298

Query: 292 IFMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYD 351
           IF SK++ MI+ +DDTFDAYGT++EL LF EAV RWDIG IDTLPEYMKFI K+LLD+Y 
Sbjct: 299 IFASKVVCMITTIDDTFDAYGTFEELTLFTEAVTRWDIGLIDTLPEYMKFIVKALLDIYR 358

Query: 352 KAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLT 411
           +AEE LAKEGR SYG+ Y KQ M+E I++YF+EAKWL++G++P  +EY+ VAL S G+ T
Sbjct: 359 EAEEELAKEGR-SYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRT 417

Query: 412 LATASFVDMGD-IATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVEC 470
           LA ASFVD+GD IATK+ FE ++K  K + A +TIGRLMDDIA ++FEQKRGH PSAVEC
Sbjct: 418 LAVASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFEQKRGHNPSAVEC 477

Query: 471 YMKQHGVSEEEAKKALRIQVDNAWKDINEELLSPTAVSLPLLERILNLARVCHFMYEDG- 529
           Y  QHGVSEEEA K L ++V N+WKDINEELL+PT V LP+L+R+L  AR  HF+Y+DG 
Sbjct: 478 YKNQHGVSEEEAVKELLLEVANSWKDINEELLNPTTVPLPMLQRLLYFARSGHFIYDDGH 537

Query: 530 DRYTQPLLMKDQVALVLKDPVTL 552
           DRYT  L+MK QVAL+L +P+ +
Sbjct: 538 DRYTHSLMMKRQVALLLTEPLAI 560
Sesquiterpene cyclase catalyzing the production of beta-farnesene from farnesyl diphosphate.
Citrus junos (taxid: 135197)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 4EC: 7
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function description
>sp|Q6Q3H2|TPSVS_VITVI Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|E3W208|SPISS_SANSP Sesquiterpene synthase OS=Santalum spicatum PE=2 SV=1 Back     alignment and function description
>sp|F6M8H5|SAUST_SANAS Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|F6M8H6|SPIST_SANSP Probable sesquiterpene synthase OS=Santalum spicatum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query552
75250254560 RecName: Full=(E)-beta-farnesene synthas 0.989 0.975 0.674 0.0
300079902560 (E)-beta-farnesene synthase [Citrus reti 0.989 0.975 0.669 0.0
313585892551 Tps2-1 [Clausena lansium] 0.971 0.972 0.636 0.0
9864189555 terpene synthase [Citrus junos] 0.987 0.981 0.62 0.0
261343328548 terpene synthase 1 [Citrus sinensis] 0.969 0.976 0.606 0.0
33316389548 valencene synthase [Citrus sinensis] 0.969 0.976 0.605 0.0
19880625548 putative terpene synthase [Citrus x para 0.969 0.976 0.605 0.0
359493937557 PREDICTED: (-)-germacrene D synthase [Vi 0.983 0.974 0.554 1e-175
147828675557 hypothetical protein VITISV_013313 [Viti 0.983 0.974 0.552 1e-174
147856860557 hypothetical protein VITISV_030783 [Viti 0.983 0.974 0.550 1e-174
>gi|75250254|sp|Q94JS8.1|FARS_CITJU RecName: Full=(E)-beta-farnesene synthase; Short=CjFS; AltName: Full=Terpene synthase 10 gi|14134188|gb|AAK54279.1| (E)-beta-farnesene synthase [Citrus junos] Back     alignment and taxonomy information
 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/563 (67%), Positives = 455/563 (80%), Gaps = 17/563 (3%)

Query: 1   MSTP----VPTVVEETVRPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMM 56
           MS P    V +  EETVRPIA F PT+WGNHFLKSA+D + IDA TQE + ALKQEVR M
Sbjct: 4   MSIPLLAAVSSSTEETVRPIADFHPTLWGNHFLKSAADVETIDAATQEQHAALKQEVRRM 63

Query: 57  ITATADKIADKLHLIDAVQRLGVAYHFEKEIEDELEKILDHLDNDNIGGDDFYTLSLSFR 116
           IT TA+K+A KLH+IDAVQRLGVAYHFEKEIEDEL K+   LD+D     D Y +SL FR
Sbjct: 64  ITTTANKLAQKLHMIDAVQRLGVAYHFEKEIEDELGKVSHDLDSD-----DLYVVSLRFR 118

Query: 117 LLRQQGVKISCDVFEKFKNNEGKFKASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTT 176
           L RQQGVKISCDVF+KFK++EGKFK S+IND++ MLSLYEAA+LAI GEDILDEAIVFTT
Sbjct: 119 LFRQQGVKISCDVFDKFKDDEGKFKESLINDIRGMLSLYEAAYLAIRGEDILDEAIVFTT 178

Query: 177 THLKSMVS-----HASPNLAEQINHALKLPLRKALPRLEARYFLDVCSRGDRHDKSLLKF 231
           THLKS++S     HA+ NLAEQI H+L++PLRKA  RLEARYFLD+ SR D HD++LLKF
Sbjct: 179 THLKSVISISDHSHANSNLAEQIRHSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKF 238

Query: 232 AKLDFNLLQAAHQKEVSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGR 291
           AKLDFN+LQAAHQKE S MTRWW DL F  K+PYARDRI+E Y W+L+G  YEP  AFGR
Sbjct: 239 AKLDFNILQAAHQKEASIMTRWWNDLGFPKKVPYARDRIIETYIWMLLGVSYEPNLAFGR 298

Query: 292 IFMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYD 351
           IF SK++ MI+ +DDTFDAYGT++EL LF EAV RWDIG IDTLPEYMKFI K+LLD+Y 
Sbjct: 299 IFASKVVCMITTIDDTFDAYGTFEELTLFTEAVTRWDIGLIDTLPEYMKFIVKALLDIYR 358

Query: 352 KAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLT 411
           +AEE LAKEGR SYG+ Y KQ M+E I++YF+EAKWL++G++P  +EY+ VAL S G+ T
Sbjct: 359 EAEEELAKEGR-SYGIPYAKQMMQELIILYFTEAKWLYKGYVPTFDEYKSVALRSIGLRT 417

Query: 412 LATASFVDMGD-IATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVEC 470
           LA ASFVD+GD IATK+ FE ++K  K + A +TIGRLMDDIA ++FEQKRGH PSAVEC
Sbjct: 418 LAVASFVDLGDFIATKDNFECILKNAKSLKATETIGRLMDDIAGYKFEQKRGHNPSAVEC 477

Query: 471 YMKQHGVSEEEAKKALRIQVDNAWKDINEELLSPTAVSLPLLERILNLARVCHFMYEDG- 529
           Y  QHGVSEEEA K L ++V N+WKDINEELL+PT V LP+L+R+L  AR  HF+Y+DG 
Sbjct: 478 YKNQHGVSEEEAVKELLLEVANSWKDINEELLNPTTVPLPMLQRLLYFARSGHFIYDDGH 537

Query: 530 DRYTQPLLMKDQVALVLKDPVTL 552
           DRYT  L+MK QVAL+L +P+ +
Sbjct: 538 DRYTHSLMMKRQVALLLTEPLAI 560

Source: Citrus junos

Species: Citrus junos

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|300079902|gb|ADJ67476.1| (E)-beta-farnesene synthase [Citrus reticulata] Back     alignment and taxonomy information
>gi|313585892|gb|ADR71055.1| Tps2-1 [Clausena lansium] Back     alignment and taxonomy information
>gi|9864189|gb|AAG01339.1| terpene synthase [Citrus junos] Back     alignment and taxonomy information
>gi|261343328|gb|ACX70155.1| terpene synthase 1 [Citrus sinensis] Back     alignment and taxonomy information
>gi|33316389|gb|AAQ04608.1|AF441124_1 valencene synthase [Citrus sinensis] Back     alignment and taxonomy information
>gi|19880625|gb|AAM00426.1|AF411120_1 putative terpene synthase [Citrus x paradisi] Back     alignment and taxonomy information
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query552
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 0.969 0.957 0.475 6e-135
UNIPROTKB|J7LP58564 J7LP58 "Alpha-copaene/delta-ca 0.961 0.941 0.430 1.5e-115
UNIPROTKB|B2KSJ5571 B2KSJ5 "(+)-gamma-cadinene syn 0.963 0.931 0.422 1.5e-113
UNIPROTKB|J7LMP2565 J7LMP2 "Bicyclogermacrene synt 0.960 0.938 0.415 5.2e-113
UNIPROTKB|Q49SP4545 Q49SP4 "Germacrene D synthase 0.961 0.974 0.416 3.6e-112
UNIPROTKB|J7LJN5555 J7LJN5 "Beta-caryophyllene syn 0.954 0.949 0.428 4.6e-112
UNIPROTKB|Q49SP5554 Q49SP5 "Germacrene A synthase" 0.967 0.963 0.414 1.9e-108
UNIPROTKB|B3TPQ6550 B3TPQ6 "Beta-cubebene synthase 0.969 0.972 0.392 1.5e-106
UNIPROTKB|E2E2N7555 TPS4 "Bicyclogermacrene syntha 0.956 0.951 0.391 1.5e-106
UNIPROTKB|Q8LSC3583 Q8LSC3 "Germacrene A synthase 0.963 0.912 0.387 6.4e-99
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 1322 (470.4 bits), Expect = 6.0e-135, P = 6.0e-135
 Identities = 257/541 (47%), Positives = 358/541 (66%)

Query:    14 RPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDA 73
             RPIA F P++WG+ F+  A + +   A  +   E LK++VR  + AT DK   +L++IDA
Sbjct:    19 RPIANFPPSIWGDRFINYACEDENEQAQKERQVEELKEQVRRELAATVDKPLQQLNIIDA 78

Query:    74 VQRLGVAYHFXXXXXXXXXXXXXH--LDNDNI-GGDDFYTLSLSFRLLRQQGVKISCDVX 130
              QRLG+AYHF             H  ++N+   G  D Y+++L FRLLRQ G K+SCDV 
Sbjct:    79 TQRLGIAYHFENEIEESLEHIYLHTYVENNCFQGSHDLYSVALWFRLLRQDGYKVSCDVF 138

Query:   131 XXXXXXXXXXXASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSHASPNL 190
                         S++ D + +L LYEA HL+++GE++LD+A+ F  T L+S+V+H +  L
Sbjct:   139 DKFRDYEDNFKNSLMEDAKGLLELYEATHLSVHGEEMLDDALEFAKTRLESIVNHLNYPL 198

Query:   191 AEQINHXXXXXXXXXXXXXEARYFLDVCSRGDRHDKSLLKFAKLDFNLLQAAHQKEVSDM 250
             AEQ+ H             EA YF  +    D H+K+LLK AKLDFNLLQ+ H+KE+SDM
Sbjct:   199 AEQVRHALYRPLRKGLPRLEAVYFFRIYEAYDSHNKALLKLAKLDFNLLQSLHKKELSDM 258

Query:   251 TRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDA 310
              RWW  LDF+ K P+ARDR+VE YFW+L G Y+EP+Y+  R  + K+ +MIS +DD +DA
Sbjct:   259 ARWWKSLDFAAKFPFARDRLVEGYFWVL-GVYFEPQYSLARKIIIKVFTMISTIDDIYDA 317

Query:   311 YGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYV 370
             YGT DEL+LF +A++RWD+G++D LPEYMK  YKS+LDVY++ EE +  +G S + + Y 
Sbjct:   318 YGTLDELELFTKAMQRWDVGSLDQLPEYMKPCYKSILDVYNEIEEEMDNQG-SLFRMHYA 376

Query:   371 KQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFE 430
             K+ M++ +  Y  EAKW HE ++P  EEY  VAL +SG   L T S++ MG+IA+KEAF+
Sbjct:   377 KEVMKKLVEGYMDEAKWCHEKYVPTFEEYMPVALVTSGYTFLTTISYLGMGEIASKEAFD 436

Query:   431 WLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKALRIQV 490
             WL   P ++ A++++ RLMDD+ SH+FEQ+RGH+ S +ECYMKQ+GV+EEEA    R Q+
Sbjct:   437 WLFSHPPVIEASESVCRLMDDMRSHKFEQERGHVASGIECYMKQYGVTEEEAHDEFRKQL 496

Query:   491 DNAWKDINEELLSPTAVSLPLLERILNLARVCHFMYEDGDRYTQ-PLLMKDQVALVLKDP 549
               AWKDINEE L P  V  PLL RILNL RV   +Y++ D YT     MKD +A +L DP
Sbjct:   497 VKAWKDINEECLRPYRVPKPLLMRILNLTRVIDVIYKNEDGYTHVKKAMKDNIASLLIDP 556

Query:   550 V 550
             +
Sbjct:   557 M 557
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP4 Q49SP4 "Germacrene D synthase 1" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|E2E2N7 TPS4 "Bicyclogermacrene synthase" [Origanum vulgare (taxid:39352)] Back     alignment and assigned GO terms
UNIPROTKB|Q8LSC3 Q8LSC3 "Germacrene A synthase long form" [Cichorium intybus (taxid:13427)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94JS8FARS_CITJU4, ., 2, ., 3, ., 4, 70.67490.98910.975N/Ano
Q84UU4HUMS_ARATH4, ., 2, ., 3, ., -0.41490.97640.9853yesno
F6M8H5SAUST_SANAS4, ., 2, ., 3, ., -0.50460.97280.9555N/Ano
F6M8H4SAST_SANAL4, ., 2, ., 3, ., -0.50360.99090.9785N/Ano
F6M8H7SMST_SANMU4, ., 2, ., 3, ., -0.51190.97280.9555N/Ano
F6M8H6SPIST_SANSP4, ., 2, ., 3, ., -0.50270.96920.9519N/Ano
E3W207SAUSS_SANAS4, ., 2, ., 3, ., -0.51070.99270.9803N/Ano
E3W208SPISS_SANSP4, ., 2, ., 3, ., -0.51190.96920.9519N/Ano
B5A435STPS1_SANAL4, ., 2, ., 3, ., -0.50890.99270.9803N/Ano
Q6Q3H3TPSGD_VITVI4, ., 2, ., 3, ., 7, 50.54970.98550.9766yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.976
3rd Layer4.2.3.23LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027449001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (557 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query552
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 0.0
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 1e-110
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-109
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 1e-78
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 4e-35
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 3e-31
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 3e-22
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 2e-15
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  690 bits (1782), Expect = 0.0
 Identities = 271/545 (49%), Positives = 389/545 (71%), Gaps = 12/545 (2%)

Query: 14  RPIAGFSPTVWGN-HFLKSASDFKAIDATTQELYEALKQEVRMMITAT--ADKIADKLHL 70
           RP A F P++WG+ HFL  +SD+   D   +E+ E LK+EVR M+  +     + ++L L
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEI-EELKEEVRKMLEDSEYPVDLFERLWL 59

Query: 71  IDAVQRLGVAYHFEKEIEDELEKILDHL-DNDNIGGDDFYTLSLSFRLLRQQGVKISCDV 129
           ID +QRLG++YHFE EI++ L+ I  +  +      DD YT +L FRLLRQ G  +S DV
Sbjct: 60  IDRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDV 119

Query: 130 FEKFKNNEGKFKASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSH---A 186
           F+KFK+ +GKFK S+  DV+ MLSLYEA+HL+  GEDILDEA+ FTT HL+  +      
Sbjct: 120 FKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWII 179

Query: 187 SPNLAEQINHALKLPLRKALPRLEARYFLDVCSRGDRHDKSLLKFAKLDFNLLQAAHQKE 246
            P+L+ +I +AL++PL  +LPRLEAR++++   + D H+++LL+ AKLDFN+LQA HQ+E
Sbjct: 180 DPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEE 239

Query: 247 VSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDD 306
           +  ++RWW DLD ++KLP+ARDR+VE YFW   G Y+EP+Y+  RI ++K I++I+++DD
Sbjct: 240 LKILSRWWKDLDLASKLPFARDRLVECYFWAA-GTYFEPQYSLARIALAKTIALITVIDD 298

Query: 307 TFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYG 366
           T+D YGT +EL+LF EAV+RWDI AID LPEYMK ++K+LL+  ++ EE L KEG S Y 
Sbjct: 299 TYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGS-YV 357

Query: 367 VKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATK 426
           V Y+K+  ++ +  Y  EAKW HEG++P  EEY   AL S G+  L   SF+ MGDI T+
Sbjct: 358 VPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTE 417

Query: 427 EAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKAL 486
           EAFEWL  +PK+V A+ TIGRLM+DIA++E E KRG + S++ECYMK++GVSEEEA++ +
Sbjct: 418 EAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEI 477

Query: 487 RIQVDNAWKDINEELLSP-TAVSLPLLERILNLARVCHFMYEDGDRYTQPL-LMKDQVAL 544
           +  +++AWK++NEE L P + V  P+ +R LNLARV    Y++GD +T P   +KD +  
Sbjct: 478 KKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITS 537

Query: 545 VLKDP 549
           +L +P
Sbjct: 538 LLFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 552
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
PLN0215096 terpene synthase/cyclase family protein 99.97
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.85
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 97.78
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 97.66
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 91.45
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 91.43
cd00685259 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase 87.33
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 86.21
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=1.2e-154  Score=1275.89  Aligned_cols=533  Identities=51%  Similarity=0.914  Sum_probs=511.8

Q ss_pred             CCCCCCCCCCccc-cccccCCchhhhhHHHHHHHHHHHHHHHHHHhhc--hhccccchhHHHHHHHhCcccccHHHHHHH
Q 008817           14 RPIAGFSPTVWGN-HFLKSASDFKAIDATTQELYEALKQEVRMMITAT--ADKIADKLHLIDAVQRLGVAYHFEKEIEDE   90 (552)
Q Consensus        14 r~~~~~~ps~W~~-~f~~~~~~~~~~~~~~~~~~~~lk~~vr~~l~~~--~~d~~~~l~lID~lqrLGi~~hF~~EI~~~   90 (552)
                      ||+++||||+||| +|+++++++.. ...+.+++++||++||+||...  |.|++++|++||+||||||+|||++||+++
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~~-~~~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~   79 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYSE-EDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEI   79 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcch-hHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence            7899999999999 77776554432 2267889999999999999875  789999999999999999999999999999


Q ss_pred             HHHHHhhccCCC-CCCCChhhhHHHHHHhhhcCcccccccccccccccccccccchhhHHHHHhHHhhcccCCCCcchHH
Q 008817           91 LEKILDHLDNDN-IGGDDFYTLSLSFRLLRQQGVKISCDVFEKFKNNEGKFKASMINDVQVMLSLYEAAHLAINGEDILD  169 (552)
Q Consensus        91 L~~i~~~~~~~~-~~~~dl~~~al~FRLLR~hGy~vS~dvf~~F~d~~g~F~~~l~~d~~glL~LyeAs~l~~~gE~iL~  169 (552)
                      |++||++|.+.. ....||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+|||
T Consensus        80 L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLd  159 (542)
T cd00684          80 LDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILD  159 (542)
T ss_pred             HHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHH
Confidence            999999986532 2357999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhc---CCCcHHHHHHHhccCCccccchhhHHHHhHHhhcCCCCCCHHHHHHHhhhhHHHHHhhHHH
Q 008817          170 EAIVFTTTHLKSMVSH---ASPNLAEQINHALKLPLRKALPRLEARYFLDVCSRGDRHDKSLLKFAKLDFNLLQAAHQKE  246 (552)
Q Consensus       170 ea~~ft~~~L~~~~~~---~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~E  246 (552)
                      ||++||++||++.+++   ++++|+++|++||++|||+++||||||+||++|++++++|++||||||+|||+||++||+|
T Consensus       160 eA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~E  239 (542)
T cd00684         160 EALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEE  239 (542)
T ss_pred             HHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHHH
Confidence            9999999999999986   7889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCChhhhhhHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHhhhcccccCCCHHHHHHHHHHHhh
Q 008817          247 VSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKR  326 (552)
Q Consensus       247 l~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~a~~feP~~s~~Rl~laK~~~l~~iiDD~fD~~gt~eEl~~ft~ai~r  326 (552)
                      |+++++||+++||.++|||+|+|+++||||+ +|++|+|++|.+|+++||+++|+|++||+||.|||++|++.||+||+|
T Consensus       240 l~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~-~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~r  318 (542)
T cd00684         240 LKILSRWWKDLDLASKLPFARDRLVECYFWA-AGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVER  318 (542)
T ss_pred             HHHHhHHHHhcCCcccCCcccchhHHHHHHH-HhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHh
Confidence            9999999999999888899999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             ccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHhhhhccc
Q 008817          327 WDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGS  406 (552)
Q Consensus       327 Wd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S  406 (552)
                      ||+++++++|+|||+||.+|+++++++++.+.++|++ +++.|++++|+++++||++||+|+++||+||++|||++|++|
T Consensus       319 wd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~-~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S  397 (542)
T cd00684         319 WDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGS-YVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVS  397 (542)
T ss_pred             ccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHH
Confidence            9999999999999999999999999999888888887 899999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCccchHHHhhcCCCcchHHHHHHhcCCCHHHHHHHH
Q 008817          407 SGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKAL  486 (552)
Q Consensus       407 ~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~g~S~eeA~~~i  486 (552)
                      +|++++++++++++|+.+|+++++|+..+|+|+++++.++||+|||+||++|+++|+++|+|.|||+|+|+|+|||++++
T Consensus       398 ~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g~s~eeA~~~i  477 (542)
T cd00684         398 IGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEI  477 (542)
T ss_pred             hhHHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcCCCHHHHHHHH
Confidence            99999999999999999999999998778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHhhhhhhcccCCCCCCc-hhHHHHHHHhhcCC
Q 008817          487 RIQVDNAWKDINEELLSP-TAVSLPLLERILNLARVCHFMYEDGDRYTQP-LLMKDQVALVLKDP  549 (552)
Q Consensus       487 ~~~i~~~wk~ln~e~l~~-~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~-~~~k~~i~~l~~~p  549 (552)
                      +++|+++||++|++++++ +++|++|+++++|+||+++++|+++||||.| +.||++|++||++|
T Consensus       478 ~~~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~~p  542 (542)
T cd00684         478 KKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP  542 (542)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence            999999999999999987 7899999999999999999999999999999 78999999999998

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query552
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 1e-133
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-119
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-119
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-118
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 1e-118
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 1e-118
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-118
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-118
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 1e-117
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 1e-116
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 1e-83
2j5c_A569 Rational Conversion Of Substrate And Product Specif 4e-72
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 4e-69
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 8e-64
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 2e-61
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 3e-51
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 4e-44
3pya_A727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 3e-05
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  471 bits (1211), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/520 (45%), Positives = 328/520 (63%), Gaps = 7/520 (1%)
Query: 14  RPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDA 73
           RP A F P++WG+ FL      K IDA T++ ++ LK+EVR MI A       KL  ID+
Sbjct: 22  RPKADFQPSIWGDLFLNCPD--KNIDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDS 79
Query: 74  VQRLGVAYHFXXXXXXXXXXXXXHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVXXXX 133
           VQRLGV+YHF                N+N   +D YT S+ FRLLR+ G  +SCDV    
Sbjct: 80  VQRLGVSYHFTKEIEDELENI---YHNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKF 136
Query: 134 XXXXXXXXASMINDVQVMLSLYEAAHLAINGEDILDEAIVFTTTHLKSMVSHASPNLAEQ 193
                   +S+ +DV+ +L LY+A++L ++GEDILDEAI FTT HL   V+     L+E+
Sbjct: 137 KDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEE 196
Query: 194 INHXXXXXXXXXXXXXEARYFLDVCSRGDRHDKSLLKFAKLDFNLLQAAHQKEVSDMTRW 253
           ++H             EAR++L V    + H+K+LL+FAK+DFN+LQ  H+KE+S++ RW
Sbjct: 197 VSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRW 256
Query: 254 WIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGT 313
           W DLDF  KLPYARDR+VE YFWI  G Y+EP+Y+ GR  ++K+I+M SI+DDT+D+Y T
Sbjct: 257 WKDLDFQRKLPYARDRVVEGYFWI-SGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYAT 315
Query: 314 YDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQT 373
           Y+EL  +  A++RWDI  ID +PEYMK  YK+LLDVY++  + +A+ GR  Y V+Y K  
Sbjct: 316 YEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGR-QYRVEYAKNA 374
Query: 374 MEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLI 433
           M      Y  EAKW  + + P  EE++  AL + G   LA  SFV MGDI T E F+W  
Sbjct: 375 MIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAA 434
Query: 434 KKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVSEEEAKKALRIQVDNA 493
             PKI+ A+  I R MDD+A H+F+ +R    SA+ECYM+++GV+ +EA       V++A
Sbjct: 435 SDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESA 494
Query: 494 WKDINEELLSPTAVSLPLLERILNLARVCHFMYEDGDRYT 533
           WKD+N+E L PT +   +L R LNLARV   +Y +GD YT
Sbjct: 495 WKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYT 534
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query552
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 0.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 0.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 0.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 0.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 0.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 0.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-155
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-154
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-151
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 1e-101
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 3e-32
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 1e-28
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 7e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 2e-04
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  552 bits (1422), Expect = 0.0
 Identities = 263/561 (46%), Positives = 371/561 (66%), Gaps = 16/561 (2%)

Query: 1   MSTPVPTVV--------EETVRPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQE 52
           M++ V  +         ++ +RP A F P++WG+ FL        IDA T++ ++ LK+E
Sbjct: 1   MASQVSQMPSSSPLSSNKDEMRPKADFQPSIWGDLFLNCPDK--NIDAETEKRHQQLKEE 58

Query: 53  VRMMITATADKIADKLHLIDAVQRLGVAYHFEKEIEDELEKILDHLDNDNIGGDDFYTLS 112
           VR MI A       KL  ID+VQRLGV+YHF KEIEDELE I  + ++     +D YT S
Sbjct: 59  VRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAE---NDLYTTS 115

Query: 113 LSFRLLRQQGVKISCDVFEKFKNNEGKFKASMINDVQVMLSLYEAAHLAINGEDILDEAI 172
           + FRLLR+ G  +SCDVF KFK+ +G FK+S+ +DV+ +L LY+A++L ++GEDILDEAI
Sbjct: 116 IRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAI 175

Query: 173 VFTTTHLKSMVSHASPNLAEQINHALKLPLRKALPRLEARYFLDVCSRGDRHDKSLLKFA 232
            FTT HL   V+     L+E+++HALK  +R+ LPR+EAR++L V    + H+K+LL+FA
Sbjct: 176 SFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFA 235

Query: 233 KLDFNLLQAAHQKEVSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRI 292
           K+DFN+LQ  H+KE+S++ RWW DLDF  KLPYARDR+VE YFWI  G Y+EP+Y+ GR 
Sbjct: 236 KIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWI-SGVYFEPQYSLGRK 294

Query: 293 FMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDK 352
            ++K+I+M SI+DDT+D+Y TY+EL  +  A++RWDI  ID +PEYMK  YK+LLDVY++
Sbjct: 295 MLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEE 354

Query: 353 AEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALGSSGVLTL 412
             + +A+ GR  Y V+Y K  M      Y  EAKW  + + P  EE++  AL + G   L
Sbjct: 355 MVQLVAEHGR-QYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAML 413

Query: 413 ATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYM 472
           A  SFV MGDI T E F+W    PKI+ A+  I R MDD+A H+F+ +R    SA+ECYM
Sbjct: 414 AITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYM 473

Query: 473 KQHGVSEEEAKKALRIQVDNAWKDINEELLSPTAVSLPLLERILNLARVCHFMYEDGDRY 532
           +++GV+ +EA       V++AWKD+N+E L PT +   +L R LNLARV   +Y +GD Y
Sbjct: 474 EEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGY 533

Query: 533 TQP-LLMKDQVALVLKDPVTL 552
           T      K  +  +L +P+ L
Sbjct: 534 TYVGKAAKGGITSLLIEPIAL 554
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query552
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 100.0
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.76
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.28
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 83.97
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 82.43
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 81.4
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
Probab=100.00  E-value=3.8e-170  Score=1385.26  Aligned_cols=544  Identities=46%  Similarity=0.806  Sum_probs=509.9

Q ss_pred             CCCCCCCC-cccccCCCCCCCCCCccccccccCCchhhhhHHHHHHHHHHHHHHHHHHhhchhccccchhHHHHHHHhCc
Q 008817            1 MSTPVPTV-VEETVRPIAGFSPTVWGNHFLKSASDFKAIDATTQELYEALKQEVRMMITATADKIADKLHLIDAVQRLGV   79 (552)
Q Consensus         1 ~~~~~~~~-~~~~~r~~~~~~ps~W~~~f~~~~~~~~~~~~~~~~~~~~lk~~vr~~l~~~~~d~~~~l~lID~lqrLGi   79 (552)
                      ||++++++ ..++.||+||||||+|||+||++.+.. ...+.+.+|+++||++||+||.+...|++++|+|||+||||||
T Consensus         3 ~~~~~~~~~~~~~~R~~~~~~ps~W~d~fl~~~~~~-~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqrLGi   81 (550)
T 3m00_A            3 MASAAVANYEEEIVRPVADFSPSLWGDQFLSFSIKN-QVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGI   81 (550)
T ss_dssp             -------------CCCCCCCCCCTTTTTTSCCCCCH-HHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTTC
T ss_pred             cccccccccccccCCCCCCCCcccccccccccCCcc-hhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCc
Confidence            89988554 566789999999999999999975433 3456788999999999999997535789999999999999999


Q ss_pred             ccccHHHHHHHHHHHHhhccCCCCCCCChhhhHHHHHHhhhcCcccccccccccccccccccccchhhHHHHHhHHhhcc
Q 008817           80 AYHFEKEIEDELEKILDHLDNDNIGGDDFYTLSLSFRLLRQQGVKISCDVFEKFKNNEGKFKASMINDVQVMLSLYEAAH  159 (552)
Q Consensus        80 ~~hF~~EI~~~L~~i~~~~~~~~~~~~dl~~~al~FRLLR~hGy~vS~dvf~~F~d~~g~F~~~l~~d~~glL~LyeAs~  159 (552)
                      +|||++||+++|++||++|.+    ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||
T Consensus        82 ~~hF~~EI~~~L~~i~~~~~~----~~dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~G~F~~~l~~d~~glL~LYeAs~  157 (550)
T 3m00_A           82 SYHFEKEIDDILDQIYNQNSN----CNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASH  157 (550)
T ss_dssp             GGGCHHHHHHHHHHHHHHCCC----CSSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHT
T ss_pred             hhhhHHHHHHHHHHHHHhccc----CCCHHHHHHHHHHHHhcCCCCChHHhhhccccCCCccccchhchHHHHHHHHHHh
Confidence            999999999999999998843    4799999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcchHHHHHHHHHHHHHhhhhcCCCcHHHHHHHhccCCccccchhhHHHHhHH-hhcCCCCCCHHHHHHHhhhhHH
Q 008817          160 LAINGEDILDEAIVFTTTHLKSMVSHASPNLAEQINHALKLPLRKALPRLEARYFLD-VCSRGDRHDKSLLKFAKLDFNL  238 (552)
Q Consensus       160 l~~~gE~iL~ea~~ft~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yI~-~y~~~~~~n~~lLelAkldFn~  238 (552)
                      +++|||+|||||+.||++||++.+++++++|+++|+|||++|||+++||||||+||+ +|++++++|++||||||||||+
T Consensus       158 l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~~~~n~~lLelAkldFn~  237 (550)
T 3m00_A          158 VRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNL  237 (550)
T ss_dssp             TCCTTCGGGTTHHHHHHHHHHHHGGGCCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGCTTCCHHHHHHHHHHHHH
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHhCCCccCCchHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence            999999999999999999999998877888999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHHhccCCCChhhhhhHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHhhhcccccCCCHHHHH
Q 008817          239 LQAAHQKEVSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISILDDTFDAYGTYDELK  318 (552)
Q Consensus       239 ~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~a~~feP~~s~~Rl~laK~~~l~~iiDD~fD~~gt~eEl~  318 (552)
                      ||++||+||++++||||++||.++|||||||++|||||+ +|++|||+||.+|+++||+++|++++||+||+|||+|||+
T Consensus       238 ~Q~~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~-~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~  316 (550)
T 3m00_A          238 LQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWT-LGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELE  316 (550)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHH-HHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCccccCcHHHhHHHHHHHH-HHhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHH
Confidence            999999999999999999999889999999999999999 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHH
Q 008817          319 LFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEE  398 (552)
Q Consensus       319 ~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~iPtleE  398 (552)
                      .||+||+|||++++++||+|||+||.+|+++++|+++++.++||+ ++++|++++|+++++||++||+|+++||+||+||
T Consensus       317 ~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~-~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EE  395 (550)
T 3m00_A          317 AYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRS-HIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSE  395 (550)
T ss_dssp             HHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCG-GGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred             HHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence            999999999999999999999999999999999999888899998 8999999999999999999999999999999999


Q ss_pred             HhhhhcccchhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCccchHHHhhcCCCcchHHHHHHhcCCC
Q 008817          399 YEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHIPSAVECYMKQHGVS  478 (552)
Q Consensus       399 Yl~~~~~S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~~~n~V~cyMke~g~S  478 (552)
                      ||+||++|+|++++++++++|+ +.+|+++++|+.++|+|++++++|+||+|||+||++|++||+++|+|+|||+|+|+|
T Consensus       396 Yl~na~vSsg~~~l~~~~f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke~GvS  474 (550)
T 3m00_A          396 YLSNALATTTYYLLATTSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGIS  474 (550)
T ss_dssp             HHHHHTGGGSHHHHHHHHHHTC-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHHHTCC
T ss_pred             HHHhccccchHHHHHHHHHHcC-CCCcHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccHHHHHHHhcCCC
Confidence            9999999999999999998887 679999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhcccC-CCCCCc-hhHHHHHHHhhcCCcCC
Q 008817          479 EEEAKKALRIQVDNAWKDINEELLSPTAVSLPLLERILNLARVCHFMYEDG-DRYTQP-LLMKDQVALVLKDPVTL  552 (552)
Q Consensus       479 ~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~-D~~t~~-~~~k~~i~~l~~~pi~~  552 (552)
                      +|||++++++||+++||+||+++++++++|+||+++++|+||++++||+++ ||||.| +.||++|++||++|||+
T Consensus       475 eEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~Pi~~  550 (550)
T 3m00_A          475 TKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI  550 (550)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHhhCCCCC
Confidence            999999999999999999999999988999999999999999999999998 999999 58999999999999986
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 552
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-134
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-131
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 2e-70
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 3e-64
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 1e-49
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 6e-36
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  391 bits (1005), Expect = e-134
 Identities = 104/327 (31%), Positives = 179/327 (54%), Gaps = 4/327 (1%)

Query: 226 KSLLKFAKLDFNLLQAAHQKEVSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEP 285
             + + AKL+FN++QA HQ+E+ D++RWW  L F  KLP+ RDR+VE +FW  +G +   
Sbjct: 3   PLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWA-VGMFEPH 61

Query: 286 KYAFGRIFMSKLISMISILDDTFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKS 345
           ++ + R   + +I + +++DD +D YGT DEL+LF +  KRWD  +I  LP YM+  Y  
Sbjct: 62  QHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWG 121

Query: 346 LLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFSEAKWLHEGFLPKIEEYEGVALG 405
           + +    A   + KE    + ++Y+++++ + +  YF EAKW H G+ P ++EY  +A  
Sbjct: 122 VHNYISDAAYDILKEHGF-FCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKI 180

Query: 406 SSGVLTLATASFVDMGD-IATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGHI 464
           S     + + ++    +        + L +   I+  A  I RL DD+ +  FE  RG +
Sbjct: 181 SVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDV 240

Query: 465 PSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINEELLSPTAVSLPLLERILNLARVCHF 524
           P  ++CYMK+   SEEEA + ++  +  AWKD+N  + +       ++    N+ RV  F
Sbjct: 241 PKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQF 300

Query: 525 MYEDGDRYTQP-LLMKDQVALVLKDPV 550
           +Y  GD +        + +A +L +P 
Sbjct: 301 IYLHGDGFGVQHSKTYEHIAGLLFEPY 327
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query552
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.96
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.43
d1ezfa_333 Squalene synthase {Human (Homo sapiens) [TaxId: 96 84.06
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=1e-98  Score=778.19  Aligned_cols=326  Identities=47%  Similarity=0.846  Sum_probs=311.2

Q ss_pred             CCHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHhccCCCChhhhhhHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHh
Q 008817          224 HDKSLLKFAKLDFNLLQAAHQKEVSDMTRWWIDLDFSTKLPYARDRIVELYFWILMGAYYEPKYAFGRIFMSKLISMISI  303 (552)
Q Consensus       224 ~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~a~~feP~~s~~Rl~laK~~~l~~i  303 (552)
                      +|++||||||||||+||++||+||+.++|||+++||.+++||||||++|||||+ +|++|||+||.+|+++||+++++++
T Consensus         1 ~N~~lLelAKlDFN~~Q~~hq~El~~l~rWw~~~~l~~~l~~aRdr~ve~Yfw~-~~~~fEP~~s~~R~~~aK~~~l~ti   79 (328)
T d5easa2           1 KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWA-LGVYFEPQYSQARVMLVKTISMISI   79 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHH-HHHCCSGGGHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCcccCCchHHHHHHHHHHH-HHhhcChhhHHHHHHHHHHHHHHHh
Confidence            599999999999999999999999999999999999889999999999999999 9999999999999999999999999


Q ss_pred             hhcccccCCCHHHHHHHHHHHhhccCCccCcCChhHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHH
Q 008817          304 LDDTFDAYGTYDELKLFVEAVKRWDIGAIDTLPEYMKFIYKSLLDVYDKAEESLAKEGRSSYGVKYVKQTMEESIMMYFS  383 (552)
Q Consensus       304 iDD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~g~~~~~~~~l~~~w~~~~~a~l~  383 (552)
                      +||+||+|||+||++.||+||+|||.+++++||+|||+||.++++++++++.++.++||. +++++++++|++++++|++
T Consensus        80 ~DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~~~-~~~~~l~~~w~~~~~~~l~  158 (328)
T d5easa2          80 VDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRS-HIVCHAIERMKEVVRNYNV  158 (328)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHTCSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCG-GGHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCCCHHHHHHHHHHHhcCCcchhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCe-eeHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998888888 8999999999999999999


Q ss_pred             HHHHhhcCCCCChHHHhhhhcccchhHHHHHHHHhhcCCCCcHHHHHhhhcchHHHHHHHHHhHHccCccchHHHhhcCC
Q 008817          384 EAKWLHEGFLPKIEEYEGVALGSSGVLTLATASFVDMGDIATKEAFEWLIKKPKIVVAAQTIGRLMDDIASHEFEQKRGH  463 (552)
Q Consensus       384 EAkW~~~g~iPtleEYl~~~~~S~g~~~~~~~~~~~~G~~l~~e~~e~~~~~p~l~~~~~~i~RL~NDI~S~~kE~~rG~  463 (552)
                      ||+|+++||+||+||||++|.+|+|++++++++++++|. ++++.++|+.++|+|+++++.|+||+|||+||++|+++|+
T Consensus       159 EA~W~~~g~vPt~eEYl~~~~~s~~~~~l~~~~~~~~g~-~~~e~~~~~~~~p~l~~~~~~i~RL~NDi~s~~~E~~rG~  237 (328)
T d5easa2         159 ESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQ  237 (328)
T ss_dssp             HHHHHHHTCCCCHHHHHHHHTGGGCHHHHHHHHHHTCTT-CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCCCCCChHhhhcceeeeehHHHHHHHHHHhCCC-CcHHHHHhcccchHHHHHHHHHHHHHhhhHHHHHHhccCC
Confidence            999999999999999999999999999999999999997 5778999999999999999999999999999999999999


Q ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhhhhhcccC-CCCCCc-hhHHHH
Q 008817          464 IPSAVECYMKQHGVSEEEAKKALRIQVDNAWKDINEELLSPTAVSLPLLERILNLARVCHFMYEDG-DRYTQP-LLMKDQ  541 (552)
Q Consensus       464 ~~n~V~cyMke~g~S~eeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~-D~~t~~-~~~k~~  541 (552)
                      ++|+|+|||+|+|+|+|||+++++++|+++||+||+++++++++|++|+++++|+||+++++|+++ ||||+| +.+|++
T Consensus       238 ~~s~I~cym~e~g~t~EeA~~~i~~~ie~~wk~ln~e~l~~~~~~~~~~~~~~n~ar~~~~~Y~~~~D~yt~~~~~~k~~  317 (328)
T d5easa2         238 IATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPH  317 (328)
T ss_dssp             TTCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTC-----------CCHHH
T ss_pred             CCeeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999987 999999 679999


Q ss_pred             HHHhhcCCcCC
Q 008817          542 VALVLKDPVTL  552 (552)
Q Consensus       542 i~~l~~~pi~~  552 (552)
                      |++||++|||+
T Consensus       318 i~~ll~epi~~  328 (328)
T d5easa2         318 IINLLVDSIKI  328 (328)
T ss_dssp             HHHHHTCCCCC
T ss_pred             HHHHhccCCcC
Confidence            99999999996
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure