Citrus Sinensis ID: 008820
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 552 | 2.2.26 [Sep-21-2011] | |||||||
| P90648 | 732 | Myosin heavy chain kinase | yes | no | 0.409 | 0.308 | 0.304 | 4e-19 | |
| Q93794 | 587 | F-box/WD repeat-containin | yes | no | 0.485 | 0.456 | 0.23 | 4e-14 | |
| P87053 | 605 | F-box/WD repeat-containin | yes | no | 0.442 | 0.403 | 0.270 | 4e-14 | |
| Q922B6 | 594 | E3 ubiquitin-protein liga | yes | no | 0.411 | 0.382 | 0.290 | 5e-14 | |
| Q61FW2 | 589 | F-box/WD repeat-containin | N/A | no | 0.463 | 0.434 | 0.239 | 8e-14 | |
| Q6Q0C0 | 670 | E3 ubiquitin-protein liga | yes | no | 0.411 | 0.338 | 0.290 | 1e-13 | |
| O14170 | 703 | WD repeat-containing prot | no | no | 0.394 | 0.310 | 0.249 | 8e-13 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.469 | 0.153 | 0.253 | 9e-13 | |
| P42527 | 1146 | Myosin heavy chain kinase | no | no | 0.336 | 0.162 | 0.289 | 1e-12 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.320 | 0.115 | 0.310 | 2e-12 |
| >sp|P90648|MHCKB_DICDI Myosin heavy chain kinase B OS=Dictyostelium discoideum GN=mhkB PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 114/246 (46%), Gaps = 20/246 (8%)
Query: 248 LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPL 307
L+GH V + +LFS S D SI VW LK + T +GHD V V+ D+
Sbjct: 498 LKGHEGPVESICYNDQYLFSGSSDHSIKVWDLKKLRCIFTLEGHDKPVHTVLLNDK---Y 554
Query: 308 CISGDSGGGIFVWSFSFPLGHEPLK-KWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKA 366
SG S I VW + L+ K+ E R + L SG+YL++GS D+TIK
Sbjct: 555 LFSGSSDKTIKVWDL------KTLECKYTLESHAR--AVKTLCISGQYLFSGSNDKTIKV 606
Query: 367 WSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAV 426
W L + T+ GH V+T+ + LYSGS D TIR+W+L L G
Sbjct: 607 WDLKTFRCNYTLKGHTKWVTTICILGTNLYSGSYDKTIRVWNLKSLECSATLR----GHD 662
Query: 427 SSVLSLTAVQHTLVVSHESGSIKVWRNDKFM--KSMQTHKGSV--FAVFLEGKWLFTGGW 482
V + L + + +IK+W + +++ H +V AV+ + K + +
Sbjct: 663 RWVEHMVICDKLLFTASDDNTIKIWDLETLRCNTTLEGHNATVQCLAVWEDKKCVISCSH 722
Query: 483 DKTVSV 488
D+++ V
Sbjct: 723 DQSIRV 728
|
Phosphorylates threonine in the C-terminal tail region of myosin II heavy chain. This phosphorylation is critical in regulating the assembly and disassembly of myosin II filament. Dictyostelium discoideum (taxid: 44689) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 7 |
| >sp|Q93794|SEL10_CAEEL F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis elegans GN=sel-10 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 133/300 (44%), Gaps = 32/300 (10%)
Query: 244 KFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDE 303
+F LQ D A +L + +K+ W+ +GH+ V+ + + +
Sbjct: 210 RFLKLQKFGDIFERAADKSRYLRADKIEKN---WNANPIMGSAVLRGHEDHVITCMQIHD 266
Query: 304 DQPLCISGDSGGGIFVWSFS-----FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTG 358
D + ++G + VW + L W + ++ GRY+ +G
Sbjct: 267 D--VLVTGSDDNTLKVWCIDKGEVMYTLVGHTGGVWTSQ----------ISQCGRYIVSG 314
Query: 359 SGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVL 418
S DRT+K WS +DG+L T+ GH S V +A+ +L +GSRD T+R+W + L L
Sbjct: 315 STDRTVKVWSTVDGSLLHTLQGHTSTVRCMAMAGSILVTGSRDTTLRVWDVESGRHLATL 374
Query: 419 EEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLEGKW 476
G ++V + T+V ++K+W + ++++ H V+++ E +
Sbjct: 375 H----GHHAAVRCVQFDGTTVVSGGYDFTVKIWNAHTGRCIRTLTGHNNRVYSLLFESER 430
Query: 477 --LFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGC-ADRTVKI 533
+ +G D ++ V + E +E V + + +T+ + +G + V C AD V++
Sbjct: 431 SIVCSGSLDTSIRVWDFTRPEGQECV---ALLQGHTSLTSGMQLRGNILVSCNADSHVRV 487
|
Cell autonomous negative regulator of lin-12/Notch-mediated signaling, with respect to lin-12 activity in cell fate decisions and tumorigenesis. May function as part of an E3 complex to target the intracellular domains of lin-12/Notch proteins for ubiquitin-dependent degradation. Involved in sex determination by promoting female development. Potential regulator of presenilin. May have a role in egg laying. Caenorhabditis elegans (taxid: 6239) |
| >sp|P87053|POF1_SCHPO F-box/WD repeat-containing protein pof1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pof1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 117/270 (43%), Gaps = 26/270 (9%)
Query: 248 LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPL 307
L+GH VT L L S S DK+I +W+ + + GH V+ + + D L
Sbjct: 309 LEGHSSGVTCLQFDQCKLISGSMDKTIRIWNYRTSECISILHGHTDSVLCLTF---DSTL 365
Query: 308 CISGDSGGGIFVWSFS-----FPLGHE-PLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD 361
+SG + + +W FS GH P+ N + R G+ + +GS D
Sbjct: 366 LVSGSADCTVKLWHFSGGKRITLRGHTGPV---NSVRIIRDRGL---------VLSGSDD 413
Query: 362 RTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEED 421
TIK WSL T T S H V +LA+ + L+S S DGTI+ W + + L
Sbjct: 414 STIKIWSLETNTCLHTFSAHIGPVQSLALADSRLFSCSLDGTIKQWDIEKKKCVHTL--- 470
Query: 422 SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLFTGG 481
G + V + A L+ G +KVW + + +++ H V +V L + +G
Sbjct: 471 -FGHIEGVWEIAADHLRLISGAHDGVVKVWEACECVHTLKNHSEPVTSVALGDCEVVSGS 529
Query: 482 WDKTVSVQELAGDEFEEDVIPTGAIPCGSV 511
D + + L + E + T ++P S+
Sbjct: 530 EDGKIYLW-LFNNAPNESPVSTQSVPISSL 558
|
Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Required for the inactivation of zip1 via ubiquitination. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q922B6|TRAF7_MOUSE E3 ubiquitin-protein ligase TRAF7 OS=Mus musculus GN=Traf7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 118/251 (47%), Gaps = 24/251 (9%)
Query: 246 KDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
K L+GH V L + G L+S S D +I VW +++ V+T + HD+ V +V
Sbjct: 357 KTLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLV---SSH 413
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
+ SG S I VW +G E K +E + AL + YLY+GS +TIK
Sbjct: 414 NMLFSG-SLKAIKVWDI---VGTE--LKLKKELTGLNHWVRALVAAQSYLYSGSY-QTIK 466
Query: 366 AWSLLDGTLSC--TMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + TL C + +V ++AV N + G+ + I +W + + L +
Sbjct: 467 IWDI--RTLDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTL----T 520
Query: 424 GAVSSVLSLTAV----QHTLVVSHESGSIKVWRNDKFM--KSMQTHKGSVFAVFLEGKWL 477
G V +V +L + Q + + S++VW D + +++ H+GSV A+ + L
Sbjct: 521 GHVGTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRL 580
Query: 478 FTGGWDKTVSV 488
F+G D TV V
Sbjct: 581 FSGAVDSTVKV 591
|
E3 ubiquitin ligase capable of auto-ubiquitination, following phosphorylation by MAP3K3. Potentiates MEKK3-mediated activation of the NF-kappa-B, JUN/AP1 and DDIT3 transcriptional regulators. Induces apoptosis when overexpressed. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q61FW2|SEL10_CAEBR F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis briggsae GN=sel-10 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 138/317 (43%), Gaps = 61/317 (19%)
Query: 223 DQARAAGGVKDLVNGLSKGNVKFKDLQGHRD-CVTGLAVGGGFLFSSSFDKSIHVWSLKD 281
D++R G K N S+ + L+GH + +T + + L + S D ++ VWS+ D
Sbjct: 228 DKSRYLRGEKIEKNWHSRPIMGSAILRGHEEHVITCMQIHNDLLVTGSDDNTLKVWSIDD 287
Query: 282 FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWR 341
HT GH SGG VW+
Sbjct: 288 GEVKHTLNGH---------------------SGG---VWT-------------------- 303
Query: 342 YSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRD 401
++ GRY+ +GS DRT+K W DG L T+ GH S V +A+ N L +GSRD
Sbjct: 304 ----SQISQCGRYIVSGSTDRTVKVWRAEDGFLLHTLQGHTSTVRCMAMANTTLVTGSRD 359
Query: 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR--NDKFMKS 459
T+R+W + + L+ G ++V + + +V ++K+W + K +++
Sbjct: 360 CTLRVWDIETGLHVRTLQ----GHQAAVRCVQFDGNIVVSGGYDFTVKIWDAFSGKCLRT 415
Query: 460 MQTHKGSVFAVFLEGKW--LFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY 517
+ H V+++ E + + +G D ++ V + + E +E + + + +T+ +
Sbjct: 416 LIGHSNRVYSLLYESERSIVCSGSLDTSIRVWDFSRPEGQELI---AFLSGHTSLTSGMQ 472
Query: 518 WQGKLFVGC-ADRTVKI 533
+G + V C AD V++
Sbjct: 473 LRGNILVSCNADSHVRV 489
|
Cell autonomous negative regulator of lin-12/Notch-mediated signaling, with respect to lin-12 activity in cell fate decisions and tumorigenesis. May function as part of an E3 complex to target the intracellular domains of lin-12/Notch proteins for ubiquitin-dependent degradation. Involved in sex determination by promoting female development. Potential regulator of presenilin. May have a role in egg laying. Caenorhabditis briggsae (taxid: 6238) |
| >sp|Q6Q0C0|TRAF7_HUMAN E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens GN=TRAF7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 118/251 (47%), Gaps = 24/251 (9%)
Query: 246 KDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
K L+GH V L + G L+S S D +I VW +++ V+T + HD+ V +V
Sbjct: 433 KTLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLV---SSH 489
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
+ SG S I VW +G E K +E + AL + YLY+GS +TIK
Sbjct: 490 NVLFSG-SLKAIKVWDI---VGTE--LKLKKELTGLNHWVRALVAAQSYLYSGSY-QTIK 542
Query: 366 AWSLLDGTLSC--TMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + TL C + +V ++AV N + G+ + I +W + + L +
Sbjct: 543 IWDI--RTLDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTL----T 596
Query: 424 GAVSSVLSLTAV----QHTLVVSHESGSIKVWRNDKFM--KSMQTHKGSVFAVFLEGKWL 477
G V +V +L + Q + + S++VW D + +++ H+GSV A+ + L
Sbjct: 597 GHVGTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRL 656
Query: 478 FTGGWDKTVSV 488
F+G D TV V
Sbjct: 657 FSGAVDSTVKV 667
|
E3 ubiquitin ligase capable of auto-ubiquitination, following phosphorylation by MAP3K3. Potentiates MEKK3-mediated activation of the NF-kappa-B, JUN/AP1 and DDIT3 transcriptional regulators. Induces apoptosis when overexpressed. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|O14170|POP2_SCHPO WD repeat-containing protein pop2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pop2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 115/293 (39%), Gaps = 75/293 (25%)
Query: 248 LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVM----------- 296
L+GH++ V + + L S S DK++ VW+++ H F+GH +
Sbjct: 387 LEGHKEGVWAVKIHENTLVSGSIDKTVRVWNIEKAKCTHIFRGHISIIRCLEILVPSRLI 446
Query: 297 --AVVYVDEDQPLCISGDSGGGIFVWSFS-------FPLGHEPLKKWNEEKDWRY----- 342
V V+ DQP +SG + VW P + +W + + +
Sbjct: 447 RHGVEIVEPDQPYIVSGSRDHTLRVWKLPKNTDPPYLPDNTNSIDRWEKNPYFVHTLIGH 506
Query: 343 -------SGIHALTTSGRY--------------LY----------------------TGS 359
SG + SG Y LY +GS
Sbjct: 507 TDSVRTISGYGDILVSGSYDSSIRIWRVSTGECLYHLRGHSLRIYSVLYEPERNICISGS 566
Query: 360 GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLE 419
D++I+ W L GT + GH + V+ L V L SGS D TIR+W L+ L VL
Sbjct: 567 MDKSIRVWDLSTGTCKYVLEGHDAFVTLLNVFQNRLISGSADSTIRIWDLNTGKPLMVLP 626
Query: 420 EDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAV 470
+ SG +SS +S ++S GS+K+W R K ++ + T ++ V
Sbjct: 627 SN-SGYISSFVS----DEHKIISGNDGSVKLWDVRTGKLLRFLLTDLTKIWHV 674
|
Involved in maintenance of ploidy through proteasome dependent degradation of CDK inhibitor rum1 and S-phase initiator cdc18. Functions as a recognition factor for rum1 and cdc18, which are subsequently ubiquitinated and targeted to the 26S proteasome for degradation. Together with pop1, required for cig2 instability during G2 and M phase and cig2 degradation in exponentially growing cells. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 135/304 (44%), Gaps = 45/304 (14%)
Query: 190 LVLGELSCLPKERLETEDKDELLGAEN--------SDGADIDQARAAGGVKDLVNGLSKG 241
L L ++ L + E ++++ L G ++ DG I A+G + + S+
Sbjct: 1047 LKLATVTTLQQALFEMQERNRLEGHKDGVISISISRDGQTI----ASGSLDKTIKLWSRD 1102
Query: 242 NVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVV 299
F+ L GH D V ++ G + S DK+I +W D + + T GH+ V V
Sbjct: 1103 GRLFRTLNGHEDAVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLKTITGHEQTVNNVY 1162
Query: 300 YVDEDQPLCISGDSGGGIFVWSFSFP------LGHEPLKKWNEEKDWRYSGIHALTTS-- 351
+ + + L S S I +W + GH +G+ + S
Sbjct: 1163 FSPDGKNLA-SASSDHSIKLWDTTSGQLLMTLTGHS-------------AGVITVRFSPD 1208
Query: 352 GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSL 409
G+ + GS D+T+K W DG L T++GH+ V++L+ L S S D TI+LW +
Sbjct: 1209 GQTIAAGSEDKTVKLWHRQDGKLLKTLNGHQDWVNSLSFSPDGKTLASASADKTIKLWRI 1268
Query: 410 SDHSLLTVLEEDSSGAVSSV--LSLTAVQHTLVVSHESGSIKVW-RNDKFMKSMQTHKGS 466
+D L+ L+ G SV ++ ++ + + +IK+W R+ +++ H G
Sbjct: 1269 ADGKLVKTLK----GHNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGG 1324
Query: 467 VFAV 470
V+AV
Sbjct: 1325 VYAV 1328
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|P42527|MHCKA_DICDI Myosin heavy chain kinase A OS=Dictyostelium discoideum GN=mhkA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 93/211 (44%), Gaps = 25/211 (11%)
Query: 248 LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLK--DFSHVHTFKGHDHKVMAVVYVDEDQ 305
+ GHR + +A ++F+SS D +I V ++ + + T GH +V VV ++
Sbjct: 908 VNGHRKSIESIACNSNYIFTSSPDNTIKVHIIRSGNTKCIETLVGHTGEVNCVVA---NE 964
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHA-----LTTSGRYLYTGSG 360
S I VW S + E K + G+H L SGRYL++G
Sbjct: 965 KYLFSCSYDKTIKVWDLS---------TFKEIKS--FEGVHTKYIKTLALSGRYLFSGGN 1013
Query: 361 DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEE 420
D+ I W ++ M GH+ V +L L+S S+D I++W LS+ S + L+
Sbjct: 1014 DQIIYVWDTETLSMLFNMQGHEDWVLSLHCTASYLFSTSKDNVIKIWDLSNFSCIDTLK- 1072
Query: 421 DSSGAVSSVLSLTAVQHTLVVSHESGSIKVW 451
G +SV S L E SIKVW
Sbjct: 1073 ---GHWNSVSSCVVKDRYLYSGSEDNSIKVW 1100
|
Phosphorylates threonine in the C-terminal tail region of myosin II heavy chain. This phosphorylation is critical in regulating the assembly and disassembly of myosin II filament. Requires autophosphorylation for activity. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 7 |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 87/187 (46%), Gaps = 10/187 (5%)
Query: 249 QGHRDCVT--GLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQP 306
+GH V G + G L S S D+++ +W + + TFKGH +V +VV+ +
Sbjct: 903 KGHNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVF-SPNSL 961
Query: 307 LCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKA 366
+ SG S + +W S E L + W YS A G L TGSGD+T++
Sbjct: 962 MLASGSSDQTVRLWDIS---SGECLYIFQGHTGWVYS--VAFNLDGSMLATGSGDQTVRL 1016
Query: 367 WSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSG 424
W + GH S V ++ + +L SGS D T+RLW +S + L L+ +S
Sbjct: 1017 WDISSSQCFYIFQGHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSGNCLYTLQGHTSC 1076
Query: 425 AVSSVLS 431
S V S
Sbjct: 1077 VRSVVFS 1083
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 552 | ||||||
| 359492369 | 1817 | PREDICTED: uncharacterized protein LOC10 | 0.942 | 0.286 | 0.601 | 1e-180 | |
| 302141770 | 734 | unnamed protein product [Vitis vinifera] | 0.878 | 0.660 | 0.563 | 1e-165 | |
| 356518567 | 1815 | PREDICTED: uncharacterized protein LOC10 | 0.887 | 0.269 | 0.540 | 1e-153 | |
| 255558580 | 1794 | F-box and wd40 domain protein, putative | 0.822 | 0.253 | 0.545 | 1e-150 | |
| 334182750 | 1805 | preprotein translocase secA-like protein | 0.945 | 0.289 | 0.495 | 1e-140 | |
| 186478734 | 811 | zinc ion binding protein [Arabidopsis th | 0.958 | 0.652 | 0.488 | 1e-139 | |
| 5263316 | 860 | Contains PF|00097 Zinc finger C3HC4 type | 0.972 | 0.624 | 0.480 | 1e-139 | |
| 449459378 | 761 | PREDICTED: uncharacterized protein LOC10 | 0.778 | 0.565 | 0.479 | 1e-109 | |
| 449500824 | 741 | PREDICTED: uncharacterized LOC101212974, | 0.777 | 0.578 | 0.477 | 1e-109 | |
| 242056063 | 823 | hypothetical protein SORBIDRAFT_03g00277 | 0.860 | 0.577 | 0.432 | 1e-105 |
| >gi|359492369|ref|XP_002284600.2| PREDICTED: uncharacterized protein LOC100248990 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 320/532 (60%), Positives = 392/532 (73%), Gaps = 12/532 (2%)
Query: 2 ILVMGRRVTKSVAKVGCVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECE 61
+LV GR++ +S+ + RI DKE+G+ ++ ++ F SPEV EL +KEGI +EC+
Sbjct: 297 MLVTGRKIHRSLVESVSGRRRIDDKEMGIISTNLIKREAFLSPEVFIELLQKEGIELECD 356
Query: 62 ESEFSVGYGSDVWPVACILLSLLIGEQFTKELIDYIRCVSTKASDDNIACLGMYMAWMEK 121
+SVGY SDVW +AC+LL L IG FT EL +IR S K D L +YM E+
Sbjct: 357 SLSYSVGYSSDVWSLACMLLRLFIGNPFT-EL--HIR--SAKRHSD---YLEVYMDCREE 408
Query: 122 VTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELIIKPEFDKMIRFAGPV 181
V+ LLE K G+ FV+LQ + C+CLN DP RPL+ +VWKCIREL+IKP+FD M+ G V
Sbjct: 409 VSSLLETKLGTNFVALQKILCECLNLDPKSRPLVADVWKCIRELVIKPQFDIMVSQEGTV 468
Query: 182 NLENENHCLVLGELSCLPKERLETEDKDELLGAENSDGADIDQARAAGGVKDLVNGLSKG 241
N N HCLVLGEL LPKE T + + + S ++DQA KD + GLS
Sbjct: 469 NEGNNVHCLVLGELCQLPKE---TNKGSKAVKTDESGRENVDQAGELQDDKDFIEGLSGS 525
Query: 242 NVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYV 301
VK +LQGH DC+TGLAVGGGFLFSSSFDK+IHVWSL+DF+ VH F+GH+H+VMAVV+V
Sbjct: 526 TVKSINLQGHLDCITGLAVGGGFLFSSSFDKTIHVWSLQDFTLVHQFRGHEHRVMAVVFV 585
Query: 302 DEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSG 360
DE+QPLCISGD GGGIFVW S PLG EPLKKW E+KDWRYSGIHAL SG YLYTGSG
Sbjct: 586 DEEQPLCISGDIGGGIFVWGISIPLGQEPLKKWFEQKDWRYSGIHALAISGTGYLYTGSG 645
Query: 361 DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEE 420
D++IKAWSL D TLSCTM+GHKS VS LAV +GVLYSGS DGTIRLWSL+DHS LTVL E
Sbjct: 646 DKSIKAWSLQDCTLSCTMNGHKSVVSALAVSDGVLYSGSWDGTIRLWSLNDHSPLTVLGE 705
Query: 421 DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLFTG 480
D+ G V SVLSL A H L+ +HE G +K+WRND FMKS+Q H G+VFAV + GKWLFTG
Sbjct: 706 DTPGNVISVLSLKADHHMLLAAHEDGCLKIWRNDVFMKSIQAHDGAVFAVAMGGKWLFTG 765
Query: 481 GWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVK 532
GWDK+V+VQE++GD+ + + +P G+I S +TALLYWQGKLFVGCADR +K
Sbjct: 766 GWDKSVNVQEISGDDLQIEALPVGSIASDSAVTALLYWQGKLFVGCADRIIK 817
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302141770|emb|CBI18973.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 308/547 (56%), Positives = 370/547 (67%), Gaps = 62/547 (11%)
Query: 38 SNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGEQFTKELIDYI 97
S F SPEV EL +KEGI +EC+ +SVGY SDVW +AC+LL L IG FT+ +I
Sbjct: 199 SEAFLSPEVFIELLQKEGIELECDSLSYSVGYSSDVWSLACMLLRLFIGNPFTEL---HI 255
Query: 98 RCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTN 157
R S K D L +YM E+V+ LLE K G+ FV+LQ + C+CLN DP RPL+ +
Sbjct: 256 R--SAKRHSDY---LEVYMDCREEVSSLLETKLGTNFVALQKILCECLNLDPKSRPLVAD 310
Query: 158 VWKCIRELIIKPEFDKMIRFAGPVNLENENHCLVLGELSCLPKERLETEDKDELLGAENS 217
VWKCIREL+IKP+FD M+ G VN N HCLVLGEL LPKE T + + + S
Sbjct: 311 VWKCIRELVIKPQFDIMVSQEGTVNEGNNVHCLVLGELCQLPKE---TNKGSKAVKTDES 367
Query: 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKDLQGHRDCVTGLAVG---------------- 261
++DQA KD + GLS VK +LQGH DC+TGLAVG
Sbjct: 368 GRENVDQAGELQDDKDFIEGLSGSTVKSINLQGHLDCITGLAVGEDAEIQELNFFLFQLS 427
Query: 262 ----------------------------------GGFLFSSSFDKSIHVWSLKDFSHVHT 287
GGFLFSSSFDK+IHVWSL+DF+ VH
Sbjct: 428 VCLVMVYRDFFVILVHDHLAIHSKPASLSFLSFIGGFLFSSSFDKTIHVWSLQDFTLVHQ 487
Query: 288 FKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHA 347
F+GH+H+VMAVV+VDE+QPLCISGD GGGIFVW S PLG EPLKKW E+KDWRYSGIHA
Sbjct: 488 FRGHEHRVMAVVFVDEEQPLCISGDIGGGIFVWGISIPLGQEPLKKWFEQKDWRYSGIHA 547
Query: 348 LTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRL 406
L SG YLYTGSGD++IKAWSL D TLSCTM+GHKS VS LAV +GVLYSGS DGTIRL
Sbjct: 548 LAISGTGYLYTGSGDKSIKAWSLQDCTLSCTMNGHKSVVSALAVSDGVLYSGSWDGTIRL 607
Query: 407 WSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGS 466
WSL+DHS LTVL ED+ G V SVLSL A H L+ +HE G +K+WRND FMKS+Q H G+
Sbjct: 608 WSLNDHSPLTVLGEDTPGNVISVLSLKADHHMLLAAHEDGCLKIWRNDVFMKSIQAHDGA 667
Query: 467 VFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGC 526
VFAV + GKWLFTGGWDK+V+VQE++GD+ + + +P G+I S +TALLYWQGKLFVGC
Sbjct: 668 VFAVAMGGKWLFTGGWDKSVNVQEISGDDLQIEALPVGSIASDSAVTALLYWQGKLFVGC 727
Query: 527 ADRTVKI 533
ADR +K+
Sbjct: 728 ADRIIKV 734
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518567|ref|XP_003527950.1| PREDICTED: uncharacterized protein LOC100793437 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 269/498 (54%), Positives = 356/498 (71%), Gaps = 8/498 (1%)
Query: 36 LESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGEQFTKELID 95
LE+ VF SPEVLYEL K G + S + +GYGSDVW +AC+LL LLIG ++
Sbjct: 329 LENEVFASPEVLYELLHKRGTAPDSGHSRYPIGYGSDVWSLACVLLRLLIGNVLAWNTLE 388
Query: 96 YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155
K +D + Y W+EKV+ +LE+K GSE++SL+ + C+CL+ +PG RP +
Sbjct: 389 ------MKEENDGDSS-ASYACWVEKVSSVLEDKLGSEYLSLRQILCKCLDVNPGNRPDV 441
Query: 156 TNVWKCIRELIIKPEFDKMIRFAGPVNLENENHCLVLGELSCLPKERLETEDKDELLGAE 215
+V KCI+ +++KP+FD + ++ + CLVLGEL LPK+ + EL E
Sbjct: 442 VDVRKCIQNMLVKPQFDFLGNLEVTISRDYTGICLVLGELCLLPKQSSNELIEHELWEKE 501
Query: 216 NSDGADIDQARAAGGVKDLVNGLSKGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIH 275
++ Q +D GL KG + KDLQGH DC++GLAVGG +L SSSFDK++H
Sbjct: 502 IGGQPNVVQDGKGKSDEDFAAGLPKGMTELKDLQGHLDCISGLAVGGRYLLSSSFDKTVH 561
Query: 276 VWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWN 335
VWSL+DFSH+HTF+GH++KVMA+VYVDE++PLCISGDSGGGIF+W + PL +PL+KW
Sbjct: 562 VWSLQDFSHLHTFRGHENKVMALVYVDEEEPLCISGDSGGGIFIWGIAAPLRQDPLRKWY 621
Query: 336 EEKDWRYSGIHALTTSGRY-LYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGV 394
E+KDWR+SGIH+L S + LYTGSGDRTIKAWSL D TL CTM+GH+S VSTLAVC+ V
Sbjct: 622 EKKDWRFSGIHSLVVSKNHSLYTGSGDRTIKAWSLKDETLICTMTGHRSVVSTLAVCDEV 681
Query: 395 LYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND 454
LYSGS DGT+RLWSL+DHS LTVL ED + S+L++T +H LV +HE+G IKVWRND
Sbjct: 682 LYSGSWDGTVRLWSLNDHSPLTVLGEDPPAEMKSILAITVDRHLLVAAHENGCIKVWRND 741
Query: 455 KFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITA 514
FM S HKG++FA+ ++GK L+TGGWDK V++QEL+GDEFE DV G+IPC +V TA
Sbjct: 742 VFMNSKTLHKGAIFAMSMQGKCLYTGGWDKNVNIQELSGDEFELDVKAYGSIPCSAVATA 801
Query: 515 LLYWQGKLFVGCADRTVK 532
+L QGKL+VG AD+++K
Sbjct: 802 ILCSQGKLYVGYADKSIK 819
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558580|ref|XP_002520315.1| F-box and wd40 domain protein, putative [Ricinus communis] gi|223540534|gb|EEF42101.1| F-box and wd40 domain protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 276/506 (54%), Positives = 343/506 (67%), Gaps = 52/506 (10%)
Query: 2 ILVMGRRVTKSVAKVGCVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECE 61
+L+ R+V +SV RI D E+G+ +++ + VF SPE+L+E+FKKE I V+C
Sbjct: 282 VLLTSRKVHESVMAARSGSRRIGDIEMGILVTELFKREVFVSPEMLFEIFKKESIEVKCG 341
Query: 62 ES-EFSVGYGSDVWPVACILLSLLIGEQFTKELIDYIRCVSTKASDDNIACLGMYMAWME 120
S +S Y SD+W +AC + LLIG+QF +EL+DY+ +K
Sbjct: 342 SSFSYSAVYSSDIWSLACTFVRLLIGKQFVEELVDYVDYSVSKQ---------------- 385
Query: 121 KVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELIIKPEFDKMIRFAGP 180
+ C+CLNF PG RP L +VWKCIRELIIKPEFD M+R
Sbjct: 386 -------------------ILCRCLNFYPGSRPPLIDVWKCIRELIIKPEFDTMLRLNKA 426
Query: 181 VNLENENHCLVLGELSCLPKERLETEDKDELLGAENSDGADIDQARAAGGVKDLVNGLSK 240
+ + + H LVL EL+ + + E KDE+ G N+ +++Q KDLV GL +
Sbjct: 427 TDEKIKRHFLVLSELARVHIKASEMHVKDEVEGPVNNSEENVEQFEGRMVDKDLVKGLVQ 486
Query: 241 GNVKFKDLQGHRDCVTGLAVGG---------------GFLFSSSFDKSIHVWSLKDFSHV 285
GNVK KDLQGH DCVTGLA+GG GFLFSSSFDKS+ VWSL+D S +
Sbjct: 487 GNVKLKDLQGHLDCVTGLAIGGDEPQQDVPTYVYPAGGFLFSSSFDKSVRVWSLQDLSPL 546
Query: 286 HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGI 345
HTFKGH+HKVMAV+YVDE+QPLCISGD+GGGIF+WS + PL E LK W E+KDWRYSGI
Sbjct: 547 HTFKGHEHKVMAVIYVDEEQPLCISGDAGGGIFLWSINHPLRQESLKNWYEQKDWRYSGI 606
Query: 346 HALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTI 404
HALTT+G YLYTGSGDR++KAWSL DG LSCTM GHKS VS+LA +GVLYSGS DGTI
Sbjct: 607 HALTTAGNGYLYTGSGDRSVKAWSLRDGILSCTMDGHKSVVSSLAASDGVLYSGSWDGTI 666
Query: 405 RLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHK 464
RLWSL+DHSLLTVL ED G ++SVLSL+ Q+ LV +HE+G IKVWRNDKFMKS+Q H
Sbjct: 667 RLWSLTDHSLLTVLGEDMPGTMTSVLSLSVCQNILVAAHENGHIKVWRNDKFMKSIQLHN 726
Query: 465 GSVFAVFLEGKWLFTGGWDKTVSVQE 490
G++FA +EGK+LFTGGWDKTV V E
Sbjct: 727 GAIFATGMEGKYLFTGGWDKTVYVLE 752
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334182750|ref|NP_001185058.1| preprotein translocase secA-like protein [Arabidopsis thaliana] gi|332192012|gb|AEE30133.1| preprotein translocase secA-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 265/535 (49%), Positives = 365/535 (68%), Gaps = 13/535 (2%)
Query: 2 ILVMGRRVTKSVAK-VGCVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVEC 60
++ GR V + +A+ + + E+GL + +F S EVL+E K++ + ++
Sbjct: 280 LIETGRNVYRIIAEETSSLRKPVGASEMGLIFVGLQQKGIFISSEVLFEFLKEQNMLIKN 339
Query: 61 EESEFSVGYGSDVWPVACILLSLLIGEQFTKELIDYIRCVSTKASDDNIA-CLGMYMAWM 119
S+ V + SDVWPV +LL L +G++ T+E I+ + CV K ++ I L +Y
Sbjct: 340 TSSKSFVSHNSDVWPVCFLLLKLRLGKRCTEEFIESVNCVDGKGCEEGIEDILVLYTGIT 399
Query: 120 EKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELIIKPEFDKMIRFAG 179
EK++ LE++ +F S+ + QC DP RP+LT++WKCIREL++KP F+ M R
Sbjct: 400 EKLS--LESELQGKFKSMVEILRQCCCLDPQARPVLTDLWKCIRELVMKPRFNSMSRLHK 457
Query: 180 PVNLENENHCLVLGELSCLPKERLETEDKDELLGAENSDGADIDQARAAGGVK-DLVNGL 238
+ + + CL EL L + + DK EL G + D A+ G V D +
Sbjct: 458 TIYGKRKQFCLAQSELCRLVEVESKEVDK-ELPGMKIGDEAE------EGKVDIDFPGRV 510
Query: 239 SKGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAV 298
S+G V+ KD++GH+D VTGLAVGGGFLFSSS+D++I +WSLKDFSHVHTFKGH KVMA+
Sbjct: 511 SEGKVRSKDMRGHQDSVTGLAVGGGFLFSSSYDRTILIWSLKDFSHVHTFKGHQDKVMAL 570
Query: 299 VYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYT 357
++++ +P+C+SGD GGGIFVWS +FPL +PL+KW E KDWRY+GIHAL S ++YT
Sbjct: 571 IHIEGTEPVCVSGDGGGGIFVWSTTFPLEEQPLRKWYEPKDWRYTGIHALAYSEYGHVYT 630
Query: 358 GSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTV 417
GSGD TIKAWSL DG+L CTMSGHKS VSTL V NGVLYSGS DGT+RLWSLSD+SLLTV
Sbjct: 631 GSGDNTIKAWSLQDGSLLCTMSGHKSVVSTLVVVNGVLYSGSWDGTVRLWSLSDNSLLTV 690
Query: 418 LEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWL 477
L E++ G V S+LSL A TLV ++++G I++WR+D MKSM+ G++ ++ + GKWL
Sbjct: 691 LGEETPGIVRSILSLAADDQTLVAAYQNGDIQIWRDDTLMKSMKIQNGAILSIAVNGKWL 750
Query: 478 FTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVK 532
FTGGWDKT++VQEL+GDE + G+IP SVIT+LLYW+GKLF G AD+T+K
Sbjct: 751 FTGGWDKTINVQELSGDEISVNCAHVGSIPGSSVITSLLYWEGKLFAGFADKTIK 805
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186478734|ref|NP_001117325.1| zinc ion binding protein [Arabidopsis thaliana] gi|17529236|gb|AAL38845.1| putative SecA-type chloroplast protein transport factor [Arabidopsis thaliana] gi|20465933|gb|AAM20152.1| putative SecA-type chloroplast transport factor protein [Arabidopsis thaliana] gi|110739333|dbj|BAF01579.1| hypothetical protein [Arabidopsis thaliana] gi|332192014|gb|AEE30135.1| zinc ion binding protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 264/540 (48%), Positives = 366/540 (67%), Gaps = 11/540 (2%)
Query: 2 ILVMGRRVTKSVAK-VGCVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVEC 60
++ GR V + +A+ + + E+GL + +F S EVL+E K++ + ++
Sbjct: 280 LIETGRNVYRIIAEETSSLRKPVGASEMGLIFVGLQQKGIFISSEVLFEFLKEQNMLIKN 339
Query: 61 EESEFSVGYGSDVWPVACILLSLLIGEQFTKELIDYIRCVSTKASDDNIA-CLGMYMAWM 119
S+ V + SDVWPV +LL L +G++ T+E I+ + CV K ++ I L +Y
Sbjct: 340 TSSKSFVSHNSDVWPVCFLLLKLRLGKRCTEEFIESVNCVDGKGCEEGIEDILVLYTGIT 399
Query: 120 EKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELIIKPEFDKMIRFAG 179
EK++ LE++ +F S+ + QC DP RP+LT++WKCIREL++KP F+ M R
Sbjct: 400 EKLS--LESELQGKFKSMVEILRQCCCLDPQARPVLTDLWKCIRELVMKPRFNSMSRLHK 457
Query: 180 PVNLENENHCLVLGELSCLPKERLETEDKDELLGAENSDGADIDQARAAGGVKDLVNGLS 239
+ + + CL EL L + + DK EL G + D A+ + D +S
Sbjct: 458 TIYGKRKQFCLAQSELCRLVEVESKEVDK-ELPGMKIGDEAEEGKVDI-----DFPGRVS 511
Query: 240 KGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVV 299
+G V+ KD++GH+D VTGLAVGGGFLFSSS+D++I +WSLKDFSHVHTFKGH KVMA++
Sbjct: 512 EGKVRSKDMRGHQDSVTGLAVGGGFLFSSSYDRTILIWSLKDFSHVHTFKGHQDKVMALI 571
Query: 300 YVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTG 358
+++ +P+C+SGD GGGIFVWS +FPL +PL+KW E KDWRY+GIHAL S ++YTG
Sbjct: 572 HIEGTEPVCVSGDGGGGIFVWSTTFPLEEQPLRKWYEPKDWRYTGIHALAYSEYGHVYTG 631
Query: 359 SGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVL 418
SGD TIKAWSL DG+L CTMSGHKS VSTL V NGVLYSGS DGT+RLWSLSD+SLLTVL
Sbjct: 632 SGDNTIKAWSLQDGSLLCTMSGHKSVVSTLVVVNGVLYSGSWDGTVRLWSLSDNSLLTVL 691
Query: 419 EEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLF 478
E++ G V S+LSL A TLV ++++G I++WR+D MKSM+ G++ ++ + GKWLF
Sbjct: 692 GEETPGIVRSILSLAADDQTLVAAYQNGDIQIWRDDTLMKSMKIQNGAILSIAVNGKWLF 751
Query: 479 TGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCNR 538
TGGWDKT++VQEL+GDE + G+IP SVIT+LLYW+GKLF G AD+T+K+ R
Sbjct: 752 TGGWDKTINVQELSGDEISVNCAHVGSIPGSSVITSLLYWEGKLFAGFADKTIKVYYFGR 811
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5263316|gb|AAD41418.1|AC007727_7 Contains PF|00097 Zinc finger C3HC4 type and 4 WD40 PF|00400 (G beta) domains [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 267/556 (48%), Positives = 372/556 (66%), Gaps = 19/556 (3%)
Query: 2 ILVMGRRVTKSVAK-VGCVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVEC 60
++ GR V + +A+ + + E+GL + +F S EVL+E K++ + ++
Sbjct: 280 LIETGRNVYRIIAEETSSLRKPVGASEMGLIFVGLQQKGIFISSEVLFEFLKEQNMLIKN 339
Query: 61 EESEFSVGYGSDVWPVACILLSLLIGEQFTKELIDYIRCVSTKASDDNIA-CLGMYMAWM 119
S+ V + SDVWPV +LL L +G++ T+E I+ + CV K ++ I L +Y
Sbjct: 340 TSSKSFVSHNSDVWPVCFLLLKLRLGKRCTEEFIESVNCVDGKGCEEGIEDILVLYTGIT 399
Query: 120 EKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELIIKPEFDKMIRFAG 179
EK++ LE++ +F S+ + QC DP RP+LT++WKCIREL++KP F+ M R
Sbjct: 400 EKLS--LESELQGKFKSMVEILRQCCCLDPQARPVLTDLWKCIRELVMKPRFNSMSRLHK 457
Query: 180 PVNLENENHCLVLGELSCLPKERLETEDKDELLGAENSDGADIDQARAAGGVKDLVNGLS 239
+ + + CL EL L + + DK EL G + D A+ + D +S
Sbjct: 458 TIYGKRKQFCLAQSELCRLVEVESKEVDK-ELPGMKIGDEAEEGKVDI-----DFPGRVS 511
Query: 240 KGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVV 299
+G V+ KD++GH+D VTGLAVGGGFLFSSS+D++I +WSLKDFSHVHTFKGH KVMA++
Sbjct: 512 EGKVRSKDMRGHQDSVTGLAVGGGFLFSSSYDRTILIWSLKDFSHVHTFKGHQDKVMALI 571
Query: 300 YVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTG 358
+++ +P+C+SGD GGGIFVWS +FPL +PL+KW E KDWRY+GIHAL S ++YTG
Sbjct: 572 HIEGTEPVCVSGDGGGGIFVWSTTFPLEEQPLRKWYEPKDWRYTGIHALAYSEYGHVYTG 631
Query: 359 SGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVL 418
SGD TIKAWSL DG+L CTMSGHKS VSTL V NGVLYSGS DGT+RLWSLSD+SLLTVL
Sbjct: 632 SGDNTIKAWSLQDGSLLCTMSGHKSVVSTLVVVNGVLYSGSWDGTVRLWSLSDNSLLTVL 691
Query: 419 EEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLF 478
E++ G V S+LSL A TLV ++++G I++WR+D MKSM+ G++ ++ + GKWLF
Sbjct: 692 GEETPGIVRSILSLAADDQTLVAAYQNGDIQIWRDDTLMKSMKIQNGAILSIAVNGKWLF 751
Query: 479 TGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIA---- 534
TGGWDKT++VQEL+GDE + G+IP SVIT+LLYW+GKLF G AD+T+K+
Sbjct: 752 TGGWDKTINVQELSGDEISVNCAHVGSIPGSSVITSLLYWEGKLFAGFADKTIKVIIVQI 811
Query: 535 ----LCNRQIPEIFSL 546
LC +P + +L
Sbjct: 812 VCLFLCIHDLPLLLNL 827
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459378|ref|XP_004147423.1| PREDICTED: uncharacterized protein LOC101212974 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 217/453 (47%), Positives = 293/453 (64%), Gaps = 23/453 (5%)
Query: 2 ILVMGRRVTKSVAKVGCVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECE 61
+LVMGR V ++V + GS++ KE+G+ S+ ++ F PEVL +L KE + +EC
Sbjct: 309 VLVMGRTVCETVIEAVSSGSKLHMKELGMLTSNLIKKEAFVPPEVLLKLLNKEDVGLECS 368
Query: 62 ESEFSVGYGSDVWPVACILLSLLIGEQFTKELIDYIRCVSTKASDDNIACLGMYMAWMEK 121
+ SVG D+W + +LLSLL+G+ +E + + + + C Y +W+EK
Sbjct: 369 TTLCSVGNKCDIWSLVLVLLSLLLGKDCFEETLGSVE-------ESHSDCSAFYGSWVEK 421
Query: 122 VTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELIIKPEFDKMIRFAGPV 181
V+ L+ KFG + SL+ C+ L+FDP RP + + +C RELI+ E D + V
Sbjct: 422 VSSCLDTKFGLGYASLKQTLCRSLDFDPENRPHVVELLRCCRELIVSSELDALASLKLGV 481
Query: 182 N---LENENHCLVLGELSCLPKERLETEDKDELLGAENSDGADIDQARAAGGVKDLVNGL 238
N E+ +HCLVLG+L LP + +ET D +DQ K V+G+
Sbjct: 482 NESGSESGDHCLVLGDLIRLPDKLIETHRDD------------MDQITEEKTTKKFVDGI 529
Query: 239 SKGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAV 298
S G VK +D+ GHRD VTGL +GG +LFSSS+DK++ WSL+DFSHVHTF GH+H++M +
Sbjct: 530 SVGMVKSRDMLGHRDSVTGLVIGGDYLFSSSYDKTVQAWSLQDFSHVHTFIGHEHRIMDL 589
Query: 299 VYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALT-TSGRYLYT 357
VY+DE+QPLC+S D GGGI+VWS + PL +PLKKW EEKDWRY GIHAL +S YLYT
Sbjct: 590 VYIDEEQPLCVSADIGGGIYVWSVALPLKQDPLKKWYEEKDWRYDGIHALAYSSNGYLYT 649
Query: 358 GSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTV 417
G GD+ +K WSL DGTLS +M GHKS VS L NGVLYSGS DG IRLWSL++ S L V
Sbjct: 650 GGGDKLVKEWSLKDGTLSGSMHGHKSVVSALVASNGVLYSGSWDGAIRLWSLANRSQLAV 709
Query: 418 LEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKV 450
L E+SSG++ SVL L A + LV +HE+GSIKV
Sbjct: 710 LGEESSGSLGSVLRLAAKMNILVATHENGSIKV 742
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449500824|ref|XP_004161204.1| PREDICTED: uncharacterized LOC101212974, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 216/452 (47%), Positives = 292/452 (64%), Gaps = 23/452 (5%)
Query: 2 ILVMGRRVTKSVAKVGCVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECE 61
+LVMGR V ++V + GS++ KE+G+ S+ ++ F PEVL +L KE + +EC
Sbjct: 309 VLVMGRTVCETVIEAVSSGSKLHMKELGMLTSNLIKKEAFVPPEVLLKLLNKEDVGLECS 368
Query: 62 ESEFSVGYGSDVWPVACILLSLLIGEQFTKELIDYIRCVSTKASDDNIACLGMYMAWMEK 121
+ SVG D+W + +LLSLL+G+ +E + + + + C Y +W+EK
Sbjct: 369 TTLCSVGNKCDIWSLVLVLLSLLLGKDCFEETLGSVE-------ESHSDCSAFYGSWVEK 421
Query: 122 VTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELIIKPEFDKMIRFAGPV 181
V+ L+ KFG + SL+ C+ L+FDP RP + + +C RELI+ E D + V
Sbjct: 422 VSSCLDTKFGLGYASLKQTLCRSLDFDPENRPHVVELLRCCRELIVSSELDALASLKLGV 481
Query: 182 N---LENENHCLVLGELSCLPKERLETEDKDELLGAENSDGADIDQARAAGGVKDLVNGL 238
N E+ +HCLVLG+L LP + +ET D +DQ K V+G+
Sbjct: 482 NESGSESGDHCLVLGDLIRLPDKLIETHRDD------------MDQITEEKTTKKFVDGI 529
Query: 239 SKGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAV 298
S G VK +D+ GHRD VTGL +GG +LFSSS+DK++ WSL+DFSHVHTF GH+H++M +
Sbjct: 530 SVGMVKSRDMLGHRDSVTGLVIGGDYLFSSSYDKTVQAWSLQDFSHVHTFIGHEHRIMDL 589
Query: 299 VYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALT-TSGRYLYT 357
VY+DE+QPLC+S D GGGI+VWS + PL +PLKKW EEKDWRY GIHAL +S YLYT
Sbjct: 590 VYIDEEQPLCVSADIGGGIYVWSVALPLKQDPLKKWYEEKDWRYDGIHALAYSSNGYLYT 649
Query: 358 GSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTV 417
G GD+ +K WSL DGTLS +M GHKS VS L NGVLYSGS DG IRLWSL++ S L V
Sbjct: 650 GGGDKLVKEWSLKDGTLSGSMHGHKSVVSALVASNGVLYSGSWDGAIRLWSLANRSQLAV 709
Query: 418 LEEDSSGAVSSVLSLTAVQHTLVVSHESGSIK 449
L E+SSG++ SVL L A + LV +HE+GSIK
Sbjct: 710 LGEESSGSLGSVLRLAAKMNILVATHENGSIK 741
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242056063|ref|XP_002457177.1| hypothetical protein SORBIDRAFT_03g002770 [Sorghum bicolor] gi|241929152|gb|EES02297.1| hypothetical protein SORBIDRAFT_03g002770 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 220/509 (43%), Positives = 307/509 (60%), Gaps = 34/509 (6%)
Query: 39 NVFFSPEVLYELFKKEGIWVECEESEFS--VGYGSDVWPVACILLSLLIGEQFTKELIDY 96
F +PEV L + ++ +F VG SD+W + C+ ++LL ++
Sbjct: 330 RAFIAPEVRVVLDDISRV----KDRDFDGLVGCSSDIWSLGCVFVALLTRDE-------- 377
Query: 97 IRCVSTKASDDNIACLGMYMAW-MEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155
+ V+ S+ G+Y W E VT L + G+ L + CL +DP CRP +
Sbjct: 378 -QLVAGWNSE------GLYDDWEKEVVTRLDASLLGTILEPLAAVIASCLRYDPKCRPEI 430
Query: 156 TNVWKCIRELIIKPEFDKMIRFAGPVNLENENHCLVLGELSCLPKER--LETEDKDELLG 213
+VWKCIR L+ K + D + V + CL+LGELS + + +E++DK +L
Sbjct: 431 ADVWKCIRGLLTKSD-DVTLAPGDDVAAQKSFRCLLLGELSSMFTDSGAVESDDKTQLSR 489
Query: 214 AENSDGADIDQARAAGGVKDLVNGLS-------KGNVKFKDLQGHRDCVTGLAVGGGFLF 266
+ + + D G + + N LS G K L HRDCVTGL VGGGFLF
Sbjct: 490 GADDNRLNQDHGSHDGFLNNRGNDLSGIDSPQSAGVFKSSTLLAHRDCVTGLDVGGGFLF 549
Query: 267 SSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDED-QPLCISGDSGGGIFVWSFSFP 325
SSS+DK+I+VWSL+DFSHV KGH+HK+ A+V D D LCISGDSG GIFVW
Sbjct: 550 SSSYDKTINVWSLQDFSHVQCLKGHEHKITAIVAADNDSHSLCISGDSGSGIFVWHVDST 609
Query: 326 LGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSA 384
L EPL KW E DW Y G++ L SG YLYTGS D++IKAWSL D +L CTM+GHKS
Sbjct: 610 LKEEPLNKWYEHDDWLYRGVNCLAVSGTGYLYTGSRDKSIKAWSLEDYSLRCTMTGHKST 669
Query: 385 VSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHE 444
VS L V +G+LYSGS DGTIRLW L+DH+ L+VLE+D++G ++ VLS++A + + S+E
Sbjct: 670 VSCLVVASGILYSGSWDGTIRLWWLTDHTPLSVLEDDTAGTIAPVLSISAEANFVASSYE 729
Query: 445 SGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTG 504
+G K+W+ND +KS + G+V+AV L KWL+TGGWDK +++QEL DE E ++
Sbjct: 730 NGYFKIWKNDMLVKSEKLQNGAVYAVKLSDKWLYTGGWDKVINIQELLDDESEVELRDVA 789
Query: 505 AIPCGSVITALLYWQGKLFVGCADRTVKI 533
+I C S+IT++L W +L VG + R +K+
Sbjct: 790 SITCDSIITSILPWDERLIVGLSSRDIKV 818
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 552 | ||||||
| TAIR|locus:4515102561 | 811 | AT1G21651 [Arabidopsis thalian | 0.947 | 0.644 | 0.494 | 4e-138 | |
| DICTYBASE|DDB_G0289115 | 732 | mhkB "myosin heavy chain kinas | 0.409 | 0.308 | 0.304 | 1.7e-18 | |
| TAIR|locus:2085929 | 473 | AT3G18950 "AT3G18950" [Arabido | 0.297 | 0.346 | 0.252 | 2e-15 | |
| UNIPROTKB|I3LMJ3 | 512 | LOC100738291 "Uncharacterized | 0.416 | 0.449 | 0.298 | 2.1e-15 | |
| UNIPROTKB|F1P0J6 | 660 | TRAF7 "Uncharacterized protein | 0.416 | 0.348 | 0.294 | 3.6e-15 | |
| UNIPROTKB|F1NEH1 | 670 | TRAF7 "Uncharacterized protein | 0.416 | 0.343 | 0.294 | 3.7e-15 | |
| UNIPROTKB|F1RFA9 | 670 | TRAF7 "Uncharacterized protein | 0.416 | 0.343 | 0.298 | 3.7e-15 | |
| POMBASE|SPAC57A10.05c | 605 | pof1 "F-box/WD repeat protein | 0.452 | 0.413 | 0.265 | 3.9e-15 | |
| MGI|MGI:3042141 | 594 | Traf7 "TNF receptor-associated | 0.416 | 0.387 | 0.294 | 4.9e-15 | |
| RGD|1559653 | 629 | Traf7 "TNF receptor-associated | 0.416 | 0.365 | 0.294 | 5.4e-15 |
| TAIR|locus:4515102561 AT1G21651 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1352 (481.0 bits), Expect = 4.0e-138, P = 4.0e-138
Identities = 265/536 (49%), Positives = 366/536 (68%)
Query: 2 ILVMGRRVTKSVAK-VGCVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVEC 60
++ GR V + +A+ + + E+GL + +F S EVL+E K++ + ++
Sbjct: 280 LIETGRNVYRIIAEETSSLRKPVGASEMGLIFVGLQQKGIFISSEVLFEFLKEQNMLIKN 339
Query: 61 EESEFSVGYGSDVWPVACILLSLLIGEQFTKELIDYIRCVSTKASDDNIA-CLGMYMAWM 119
S+ V + SDVWPV +LL L +G++ T+E I+ + CV K ++ I L +Y
Sbjct: 340 TSSKSFVSHNSDVWPVCFLLLKLRLGKRCTEEFIESVNCVDGKGCEEGIEDILVLYTGIT 399
Query: 120 EKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELIIKPEFDKMIRFAG 179
EK++ LE++ +F S+ + QC DP RP+LT++WKCIREL++KP F+ M R
Sbjct: 400 EKLS--LESELQGKFKSMVEILRQCCCLDPQARPVLTDLWKCIRELVMKPRFNSMSRLHK 457
Query: 180 PVNLENENHCLVLGELSCLPKERLETEDKDELLGAENSDGADIDQARAAGGVK-DLVNGL 238
+ + + CL EL L + + DK EL G + D A+ G V D +
Sbjct: 458 TIYGKRKQFCLAQSELCRLVEVESKEVDK-ELPGMKIGDEAE------EGKVDIDFPGRV 510
Query: 239 SKGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAV 298
S+G V+ KD++GH+D VTGLAVGGGFLFSSS+D++I +WSLKDFSHVHTFKGH KVMA+
Sbjct: 511 SEGKVRSKDMRGHQDSVTGLAVGGGFLFSSSYDRTILIWSLKDFSHVHTFKGHQDKVMAL 570
Query: 299 VYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYT 357
++++ +P+C+SGD GGGIFVWS +FPL +PL+KW E KDWRY+GIHAL S ++YT
Sbjct: 571 IHIEGTEPVCVSGDGGGGIFVWSTTFPLEEQPLRKWYEPKDWRYTGIHALAYSEYGHVYT 630
Query: 358 GSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTV 417
GSGD TIKAWSL DG+L CTMSGHKS VSTL V NGVLYSGS DGT+RLWSLSD+SLLTV
Sbjct: 631 GSGDNTIKAWSLQDGSLLCTMSGHKSVVSTLVVVNGVLYSGSWDGTVRLWSLSDNSLLTV 690
Query: 418 LEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWL 477
L E++ G V S+LSL A TLV ++++G I++WR+D MKSM+ G++ ++ + GKWL
Sbjct: 691 LGEETPGIVRSILSLAADDQTLVAAYQNGDIQIWRDDTLMKSMKIQNGAILSIAVNGKWL 750
Query: 478 FTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKI 533
FTGGWDKT++VQEL+GDE + G+IP SVIT+LLYW+GKLF G AD+T+K+
Sbjct: 751 FTGGWDKTINVQELSGDEISVNCAHVGSIPGSSVITSLLYWEGKLFAGFADKTIKV 806
|
|
| DICTYBASE|DDB_G0289115 mhkB "myosin heavy chain kinase B" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 255 (94.8 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 75/246 (30%), Positives = 114/246 (46%)
Query: 248 LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPL 307
L+GH V + +LFS S D SI VW LK + T +GHD V V+ D+
Sbjct: 498 LKGHEGPVESICYNDQYLFSGSSDHSIKVWDLKKLRCIFTLEGHDKPVHTVLLNDK---Y 554
Query: 308 CISGDSGGGIFVWSFSFPLGHEPLK-KWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKA 366
SG S I VW + L+ K+ E R + L SG+YL++GS D+TIK
Sbjct: 555 LFSGSSDKTIKVWDL------KTLECKYTLESHAR--AVKTLCISGQYLFSGSNDKTIKV 606
Query: 367 WSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAV 426
W L + T+ GH V+T+ + LYSGS D TIR+W+L L G
Sbjct: 607 WDLKTFRCNYTLKGHTKWVTTICILGTNLYSGSYDKTIRVWNLKSLECSATLR----GHD 662
Query: 427 SSVLSLTAVQHTLVVSHESGSIKVWRNDKFM--KSMQTHKGSV--FAVFLEGKWLFTGGW 482
V + L + + +IK+W + +++ H +V AV+ + K + +
Sbjct: 663 RWVEHMVICDKLLFTASDDNTIKIWDLETLRCNTTLEGHNATVQCLAVWEDKKCVISCSH 722
Query: 483 DKTVSV 488
D+++ V
Sbjct: 723 DQSIRV 728
|
|
| TAIR|locus:2085929 AT3G18950 "AT3G18950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 181 (68.8 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 45/178 (25%), Positives = 87/178 (48%)
Query: 329 EPLKKWNEEKDWRYSGIHALTTSGRY--LYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVS 386
E ++ N K Y + L+ + LY+GS D+T+K W L D ++ H A++
Sbjct: 236 EVRRRKNVLKIRHYDAVSCLSLNEELGLLYSGSWDKTLKVWRLSDSKCLESIQAHDDAIN 295
Query: 387 TLAV-CNGVLYSGSRDGTIRLWSL------SDHSLLTVLEEDSSGAVSSVLSLTAVQHTL 439
T+A + +L++GS DGT+++W + H L+ VL + + + +++TA +
Sbjct: 296 TVAAGFDDLLFTGSADGTLKVWKRELQGKGTKHFLVNVLMKQENAVTALAVNITAA--VV 353
Query: 440 VVSHESGSIKVWRNDKFMK---SMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGD 494
G++ W K++ +++ H+ +V + G + +GG DK + V GD
Sbjct: 354 YCGSSDGTVNFWEGQKYLSHGGTLRGHRLAVLCLAAAGSLVLSGGADKNICVWRRNGD 411
|
|
| UNIPROTKB|I3LMJ3 LOC100738291 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 74/248 (29%), Positives = 116/248 (46%)
Query: 246 KDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
K L+GH V L + G L+S S D +I VW +++ V+T + HD+ V +V
Sbjct: 275 KTLEGHDGIVLALCIQGCRLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLV---SSH 331
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L SG S I VW +G E K +E + AL + YLY+GS +TIK
Sbjct: 332 NLLFSG-SLKAIKVWDI---VGTE--LKLKKELTGLNHWVRALVAAQSYLYSGSY-QTIK 384
Query: 366 AWSLLDGTLSC--TMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + TL C + +V ++AV N + G+ + I +W + + L
Sbjct: 385 IWDIR--TLDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTLT-GHV 441
Query: 424 GAVSSVLSLTAVQHTLVVSHE-SGSIKVWRNDKFM--KSMQTHKGSVFAVFLEGKWLFTG 480
G V ++ ++ T V S S++VW D + +++ H+GSV A+ + LF+G
Sbjct: 442 GTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSG 501
Query: 481 GWDKTVSV 488
D TV V
Sbjct: 502 AVDSTVKV 509
|
|
| UNIPROTKB|F1P0J6 TRAF7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 3.6e-15, P = 3.6e-15
Identities = 73/248 (29%), Positives = 116/248 (46%)
Query: 246 KDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
K L+GH V L + G L+S S D +I VW +++ V+T + HD+ V +V
Sbjct: 423 KTLEGHDGIVLALCIQGNKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLV---SSH 479
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
+ SG S I VW +G E K +E + AL S YLY+GS +TIK
Sbjct: 480 NMLFSG-SLKAIKVWDI---VGTE--LKLKKELTGLNHWVRALVASQNYLYSGSY-QTIK 532
Query: 366 AWSLLDGTLSCT--MSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + + L C + +V ++AV N + G+ + I +W + + L
Sbjct: 533 IWDIRN--LECVHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIETKEQVRTLT-GHV 589
Query: 424 GAVSSVLSLTAVQHTLVVSHE-SGSIKVWRNDKFM--KSMQTHKGSVFAVFLEGKWLFTG 480
G V ++ ++ T V S S++VW D + +++ H+GSV A+ + LF+G
Sbjct: 590 GTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSG 649
Query: 481 GWDKTVSV 488
D TV V
Sbjct: 650 AVDSTVKV 657
|
|
| UNIPROTKB|F1NEH1 TRAF7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 73/248 (29%), Positives = 116/248 (46%)
Query: 246 KDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
K L+GH V L + G L+S S D +I VW +++ V+T + HD+ V +V
Sbjct: 433 KTLEGHDGIVLALCIQGNKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLV---SSH 489
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
+ SG S I VW +G E K +E + AL S YLY+GS +TIK
Sbjct: 490 NMLFSG-SLKAIKVWDI---VGTE--LKLKKELTGLNHWVRALVASQNYLYSGSY-QTIK 542
Query: 366 AWSLLDGTLSCT--MSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + + L C + +V ++AV N + G+ + I +W + + L
Sbjct: 543 IWDIRN--LECVHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIETKEQVRTLT-GHV 599
Query: 424 GAVSSVLSLTAVQHTLVVSHE-SGSIKVWRNDKFM--KSMQTHKGSVFAVFLEGKWLFTG 480
G V ++ ++ T V S S++VW D + +++ H+GSV A+ + LF+G
Sbjct: 600 GTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSG 659
Query: 481 GWDKTVSV 488
D TV V
Sbjct: 660 AVDSTVKV 667
|
|
| UNIPROTKB|F1RFA9 TRAF7 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 74/248 (29%), Positives = 116/248 (46%)
Query: 246 KDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
K L+GH V L + G L+S S D +I VW +++ V+T + HD+ V +V
Sbjct: 433 KTLEGHDGIVLALCIQGCRLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLV---SSH 489
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L SG S I VW +G E K +E + AL + YLY+GS +TIK
Sbjct: 490 NLLFSG-SLKAIKVWDI---VGTE--LKLKKELTGLNHWVRALVAAQSYLYSGSY-QTIK 542
Query: 366 AWSLLDGTLSC--TMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + TL C + +V ++AV N + G+ + I +W + + L
Sbjct: 543 IWDIR--TLDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTLT-GHV 599
Query: 424 GAVSSVLSLTAVQHTLVVSHE-SGSIKVWRNDKFM--KSMQTHKGSVFAVFLEGKWLFTG 480
G V ++ ++ T V S S++VW D + +++ H+GSV A+ + LF+G
Sbjct: 600 GTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSG 659
Query: 481 GWDKTVSV 488
D TV V
Sbjct: 660 AVDSTVKV 667
|
|
| POMBASE|SPAC57A10.05c pof1 "F-box/WD repeat protein protein Pof1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 3.9e-15, P = 3.9e-15
Identities = 70/264 (26%), Positives = 115/264 (43%)
Query: 248 LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPL 307
L+GH VT L L S S DK+I +W+ + + GH V+ + + D L
Sbjct: 309 LEGHSSGVTCLQFDQCKLISGSMDKTIRIWNYRTSECISILHGHTDSVLCLTF---DSTL 365
Query: 308 CISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAW 367
+SG + + +W FS G + + + + + G L +GS D TIK W
Sbjct: 366 LVSGSADCTVKLWHFS---GGKRITLRGHTGP--VNSVRIIRDRGLVL-SGSDDSTIKIW 419
Query: 368 SLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVS 427
SL T T S H V +LA+ + L+S S DGTI+ W + + L G +
Sbjct: 420 SLETNTCLHTFSAHIGPVQSLALADSRLFSCSLDGTIKQWDIEKKKCVHTL----FGHIE 475
Query: 428 SVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVS 487
V + A L+ G +KVW + + +++ H V +V L + +G D +
Sbjct: 476 GVWEIAADHLRLISGAHDGVVKVWEACECVHTLKNHSEPVTSVALGDCEVVSGSEDGKIY 535
Query: 488 VQELAGDEFEEDVIPTGAIPCGSV 511
+ L + E + T ++P S+
Sbjct: 536 LW-LFNNAPNESPVSTQSVPISSL 558
|
|
| MGI|MGI:3042141 Traf7 "TNF receptor-associated factor 7" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 222 (83.2 bits), Expect = 4.9e-15, P = 4.9e-15
Identities = 73/248 (29%), Positives = 116/248 (46%)
Query: 246 KDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
K L+GH V L + G L+S S D +I VW +++ V+T + HD+ V +V
Sbjct: 357 KTLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLV---SSH 413
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
+ SG S I VW +G E K +E + AL + YLY+GS +TIK
Sbjct: 414 NMLFSG-SLKAIKVWDI---VGTE--LKLKKELTGLNHWVRALVAAQSYLYSGSY-QTIK 466
Query: 366 AWSLLDGTLSC--TMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + TL C + +V ++AV N + G+ + I +W + + L
Sbjct: 467 IWDIR--TLDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTLT-GHV 523
Query: 424 GAVSSVLSLTAVQHTLVVSHE-SGSIKVWRNDKFM--KSMQTHKGSVFAVFLEGKWLFTG 480
G V ++ ++ T V S S++VW D + +++ H+GSV A+ + LF+G
Sbjct: 524 GTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSG 583
Query: 481 GWDKTVSV 488
D TV V
Sbjct: 584 AVDSTVKV 591
|
|
| RGD|1559653 Traf7 "TNF receptor-associated factor 7, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 222 (83.2 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 73/248 (29%), Positives = 116/248 (46%)
Query: 246 KDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
K L+GH V L + G L+S S D +I VW +++ V+T + HD+ V +V
Sbjct: 392 KTLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLV---SSH 448
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
+ SG S I VW +G E K +E + AL + YLY+GS +TIK
Sbjct: 449 NMLFSG-SLKAIKVWDI---VGTE--LKLKKELTGLNHWVRALVAAQSYLYSGSY-QTIK 501
Query: 366 AWSLLDGTLSC--TMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + TL C + +V ++AV N + G+ + I +W + + L
Sbjct: 502 IWDIR--TLDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTLT-GHV 558
Query: 424 GAVSSVLSLTAVQHTLVVSHE-SGSIKVWRNDKFM--KSMQTHKGSVFAVFLEGKWLFTG 480
G V ++ ++ T V S S++VW D + +++ H+GSV A+ + LF+G
Sbjct: 559 GTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSG 618
Query: 481 GWDKTVSV 488
D TV V
Sbjct: 619 AVDSTVKV 626
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00015442001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (840 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 552 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-32 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-30 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-24 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-24 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-21 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-19 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-09 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 1e-08 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-04 | |
| pfam13360 | 234 | pfam13360, PQQ_2, PQQ-like domain | 1e-04 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-32
Identities = 72/249 (28%), Positives = 111/249 (44%), Gaps = 16/249 (6%)
Query: 248 LQGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
L+GH VT +A G L + S D +I VW L+ + T KGH V V +
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L S I +W E ++ + S A + GR L + S D+TIK
Sbjct: 65 YLASGS-SDKTIRLWDLETG---ECVRTLTGHTSYVSSV--AFSPDGRILSSSSRDKTIK 118
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAV--CNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + G T+ GH V+++A + S S+DGTI+LW L + L +
Sbjct: 119 VWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL-TGHT 177
Query: 424 GAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAV--FLEGKWLFT 479
G V+SV + + L+ S G+IK+W K + +++ H+ V +V +G L +
Sbjct: 178 GEVNSV-AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236
Query: 480 GGWDKTVSV 488
G D T+ V
Sbjct: 237 GSEDGTIRV 245
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 4e-30
Identities = 75/257 (29%), Positives = 115/257 (44%), Gaps = 16/257 (6%)
Query: 240 KGNVKFKDLQGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMA 297
+ + L+GH V +A G +L S S DK+I +W L+ V T GH V +
Sbjct: 39 ETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSS 98
Query: 298 VVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYT 357
V + D + S I VW + L DW S A + G ++ +
Sbjct: 99 VAFSP-DGRILSSSSRDKTIKVWDVETG---KCLTTLRGHTDWVNSV--AFSPDGTFVAS 152
Query: 358 GSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLL 415
S D TIK W L G T++GH V+++A L S S DGTI+LW LS L
Sbjct: 153 SSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL 212
Query: 416 TVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFL- 472
L +G S ++ + + L E G+I+VW R + ++++ H SV ++
Sbjct: 213 GTLRGHENGVNS--VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS 270
Query: 473 -EGKWLFTGGWDKTVSV 488
+GK L +G D T+ +
Sbjct: 271 PDGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 3e-24
Identities = 70/265 (26%), Positives = 110/265 (41%), Gaps = 35/265 (13%)
Query: 284 HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPL------GHEPLKKWNEE 337
T KGH V V + D L +G G I VW GH
Sbjct: 1 LRRTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHT-------- 51
Query: 338 KDWRYSGIHALTTS--GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAV--CNG 393
+ + S G YL +GS D+TI+ W L G T++GH S VS++A
Sbjct: 52 -----GPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR 106
Query: 394 VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW-- 451
+L S SRD TI++W + LT L + V+SV + + + S + G+IK+W
Sbjct: 107 ILSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSV-AFSPDGTFVASSSQDGTIKLWDL 164
Query: 452 RNDKFMKSMQTHKGSVFAV--FLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCG 509
R K + ++ H G V +V +G+ L + D T+ + +L+ + T
Sbjct: 165 RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS----TGKCLGTLRGHEN 220
Query: 510 SVITALLYWQGKLFVGCA-DRTVKI 533
V + G L + D T+++
Sbjct: 221 GVNSVAFSPDGYLLASGSEDGTIRV 245
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-24
Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 26/173 (15%)
Query: 248 LQGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
L+GH D V +A G F+ SSS D +I +W L+ V T GH +V +V + + +
Sbjct: 131 LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE 190
Query: 306 PLCISGDSGGGIFVWSFSFP------LGHEPLKKWNEEKDWRYSGIHALTTS--GRYLYT 357
L S G I +W S GHE +G++++ S G L +
Sbjct: 191 KLLSSSSD-GTIKLWDLSTGKCLGTLRGHE-------------NGVNSVAFSPDGYLLAS 236
Query: 358 GSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWS 408
GS D TI+ W L G T+SGH ++V++LA L SGS DGTIR+W
Sbjct: 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.9 bits (237), Expect = 4e-21
Identities = 80/306 (26%), Positives = 123/306 (40%), Gaps = 18/306 (5%)
Query: 238 LSKGNVKFKDLQGHRDCVTGLAV---GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHK 294
LS + L+GH + VT LA G SS D +I +W L+ + T GH
Sbjct: 141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP 200
Query: 295 VMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRY 354
V ++ + + L SG S G I +W S G + D + + + G
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLST--GKLLRSTLSGHSDS---VVSSFSPDGSL 255
Query: 355 LYTGSGDRTIKAWSLL-DGTLSCTMSGHKSAVSTLAV--CNGVLYSGSRDGTIRLWSLSD 411
L +GS D TI+ W L +L T+SGH S+V ++A +L SGS DGT+RLW L
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET 315
Query: 412 HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS-HESGSIKVWRNDKFMKSMQTHKGSV--- 467
LL+ L S LS + LV + G+I++W S
Sbjct: 316 GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLS 375
Query: 468 FAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCA 527
+ +G+ + +G D TV + +L + L G +
Sbjct: 376 VSFSPDGRVVSSGSTDGTVRLWDL---STGSLLRNLDGHTSRVTSLDFSPDGKSLASGSS 432
Query: 528 DRTVKI 533
D T+++
Sbjct: 433 DNTIRL 438
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.4 bits (220), Expect = 6e-19
Identities = 75/254 (29%), Positives = 109/254 (42%), Gaps = 17/254 (6%)
Query: 248 LQGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSH-VHTFKG-HDHKVMAVVYVDE 303
L+GH D +T +A G L S S D +I +W L + + + +G HD V +
Sbjct: 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120
Query: 304 DQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG-DR 362
D + S V + + ++ + S A + G+ L +GS D
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSL--AFSPDGKLLASGSSLDG 178
Query: 363 TIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLLTVLE 419
TIK W L G T++GH VS+LA ++ SGS DGTIRLW LS LL
Sbjct: 179 TIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL 238
Query: 420 EDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQT---HKGSVFAVFL--EG 474
S +V S S L G+I++W ++T H SV +V +G
Sbjct: 239 SGHSDSVVSSFSPD--GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDG 296
Query: 475 KWLFTGGWDKTVSV 488
K L +G D TV +
Sbjct: 297 KLLASGSSDGTVRL 310
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.5 bits (184), Expect = 2e-14
Identities = 68/228 (29%), Positives = 97/228 (42%), Gaps = 10/228 (4%)
Query: 238 LSKGNVKFKDLQGHRD-CVTGLAVGGGFLFSSSFDKSIHVWSLK-DFSHVHTFKGHDHKV 295
LS G + L GH D V+ + G L S S D +I +W L+ S + T GH V
Sbjct: 228 LSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV 287
Query: 296 MAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYL 355
++V + D L SG S G + +W L E S + +
Sbjct: 288 LSVAF-SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSFSPDGSLLV 344
Query: 356 YTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLY--SGSRDGTIRLWSLSDHS 413
GS D TI+ W L G T+ GH S V +++ SGS DGT+RLW LS S
Sbjct: 345 SGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGS 403
Query: 414 LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQ 461
LL L+ +S S L + +L +I++W +KS+
Sbjct: 404 LLRNLDGHTSRVTS--LDFSPDGKSLASGSSDNTIRLWDLKTSLKSVS 449
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.1 bits (183), Expect = 2e-14
Identities = 54/203 (26%), Positives = 79/203 (38%), Gaps = 12/203 (5%)
Query: 238 LSKGNVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSL--KDFSHVHTFKGHDH 293
L + + L GH V +A G L S S D ++ +W L T KGH+
Sbjct: 270 LRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG 329
Query: 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR 353
V ++ + + L G G I +W + L+ + +S GR
Sbjct: 330 PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP------DGR 383
Query: 354 YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSD 411
+ +GS D T++ W L G+L + GH S V++L L SGS D TIRLW L
Sbjct: 384 VVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443
Query: 412 HSLLTVLEEDSSGAVSSVLSLTA 434
D S L+
Sbjct: 444 SLKSVSFSPDGKVLASKSSDLSV 466
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.6 bits (140), Expect = 4e-09
Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 15/199 (7%)
Query: 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM--SGHKSAVSTLAVCNG-----VLYSGS 399
A + G L +GS D TIK W L +G H S+VS LA+ + +L S S
Sbjct: 72 AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS 131
Query: 400 RDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFM 457
DGT++LW LS L E S +V+S+ + S G+IK+W R K +
Sbjct: 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL 191
Query: 458 KSMQTHKGSVFAV---FLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITA 514
++ H V ++ G + +G D T+ + +L+ + + SV+++
Sbjct: 192 STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS---GHSDSVVSS 248
Query: 515 LLYWQGKLFVGCADRTVKI 533
L G +D T+++
Sbjct: 249 FSPDGSLLASGSSDGTIRL 267
|
Length = 466 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (139), Expect = 1e-08
Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 9/147 (6%)
Query: 267 SSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPL 326
SS+F+ + VW + V K H+ +V ++ Y D L SG G + +WS + +
Sbjct: 550 SSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609
Query: 327 GHEPLK-KWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLS-CTMSGHKSA 384
+K K N + + SGR L GS D + + L + L CTM GH
Sbjct: 610 SIGTIKTKAN------ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKT 663
Query: 385 VSTLA-VCNGVLYSGSRDGTIRLWSLS 410
VS + V + L S S D T++LW LS
Sbjct: 664 VSYVRFVDSSTLVSSSTDNTLKLWDLS 690
|
Length = 793 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 1e-04
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 371 DGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWS 408
G L T+ GH V+++A L SGS DGTI+LW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 1e-04
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 372 GTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWS 408
G L T+ GH V+++A +L SGS DGT+R+W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 27/138 (19%), Positives = 41/138 (29%), Gaps = 20/138 (14%)
Query: 312 DSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLD 371
D+ G +W G A G LY +G + A
Sbjct: 9 DAATGKVLWRVDLGGT-------------ALGGGVA--VDGGRLYVATGKGELVALDAAT 53
Query: 372 GTL--SCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLL-TVLEEDSSGAVSS 428
G L +SG + V GV+ + DG++ LL + +
Sbjct: 54 GKLLWRKDLSG--EILGAPTVAGGVVVVVTADGSLYALDAETGKLLWSYQRSLPPLTLRG 111
Query: 429 VLSLTAVQHTLVVSHESG 446
S V T++V SG
Sbjct: 112 SSSPAIVGDTVIVGFSSG 129
|
This domain contains several repeats of the PQQ repeat. Length = 234 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 552 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.98 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.98 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.98 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.98 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.96 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.95 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.93 | |
| PTZ00420 | 568 | coronin; Provisional | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.93 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.93 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.93 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.93 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.93 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.92 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.92 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.92 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.91 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.91 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.91 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.91 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.9 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.9 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.9 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.89 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.89 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.89 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.88 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.88 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.87 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.87 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.87 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.86 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.86 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.86 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.86 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.86 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.85 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.85 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.85 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.84 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.84 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.84 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.84 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.83 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.83 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.82 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.82 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.81 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.81 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.8 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.79 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.79 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.79 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.78 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.77 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.76 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.75 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.75 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.74 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.74 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.74 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.73 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.72 | |
| KOG0591 | 375 | consensus NIMA (never in mitosis)-related G2-speci | 99.72 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.71 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.71 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.7 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.7 | |
| KOG0575 | 592 | consensus Polo-like serine/threonine protein kinas | 99.69 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.69 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG0598 | 357 | consensus Ribosomal protein S6 kinase and related | 99.68 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.67 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.67 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG0615 | 475 | consensus Serine/threonine protein kinase Chk2 and | 99.66 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.66 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG0581 | 364 | consensus Mitogen-activated protein kinase kinase | 99.65 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.65 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.65 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.64 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.64 | |
| KOG0033 | 355 | consensus Ca2+/calmodulin-dependent protein kinase | 99.64 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.63 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.62 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.61 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.6 | |
| KOG0616 | 355 | consensus cAMP-dependent protein kinase catalytic | 99.6 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.6 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.6 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.58 | |
| KOG0595 | 429 | consensus Serine/threonine-protein kinase involved | 99.57 | |
| KOG0596 | 677 | consensus Dual specificity; serine/threonine and t | 99.57 | |
| smart00750 | 176 | KIND kinase non-catalytic C-lobe domain. It is an | 99.56 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.56 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.56 | |
| KOG0605 | 550 | consensus NDR and related serine/threonine kinases | 99.55 | |
| KOG0589 | 426 | consensus Serine/threonine protein kinase [General | 99.55 | |
| KOG0694 | 694 | consensus Serine/threonine protein kinase [Signal | 99.55 | |
| KOG0599 | 411 | consensus Phosphorylase kinase gamma subunit [Carb | 99.55 | |
| KOG0597 | 808 | consensus Serine-threonine protein kinase FUSED [G | 99.55 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.55 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.54 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.53 | |
| KOG0583 | 370 | consensus Serine/threonine protein kinase [Signal | 99.53 | |
| KOG0198 | 313 | consensus MEKK and related serine/threonine protei | 99.53 | |
| KOG0201 | 467 | consensus Serine/threonine protein kinase [Signal | 99.53 | |
| KOG0578 | 550 | consensus p21-activated serine/threonine protein k | 99.52 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.52 | |
| KOG0192 | 362 | consensus Tyrosine kinase specific for activated ( | 99.52 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.52 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.51 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.5 | |
| PHA02988 | 283 | hypothetical protein; Provisional | 99.5 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.49 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.48 | |
| KOG0585 | 576 | consensus Ca2+/calmodulin-dependent protein kinase | 99.48 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.47 | |
| KOG0588 | 786 | consensus Serine/threonine protein kinase [Cell cy | 99.47 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.47 | |
| cd05102 | 338 | PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi | 99.47 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.47 | |
| cd05585 | 312 | STKc_YPK1_like Catalytic domain of Yeast Protein K | 99.46 | |
| KOG0592 | 604 | consensus 3-phosphoinositide-dependent protein kin | 99.46 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.46 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.45 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.44 | |
| cd05602 | 325 | STKc_SGK1 Catalytic domain of the Protein Serine/T | 99.43 | |
| cd05571 | 323 | STKc_PKB Catalytic domain of the Protein Serine/Th | 99.43 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.43 | |
| KOG0983 | 391 | consensus Mitogen-activated protein kinase (MAPK) | 99.43 | |
| cd05631 | 285 | STKc_GRK4 Catalytic domain of the Protein Serine/T | 99.43 | |
| cd05048 | 283 | PTKc_Ror Catalytic Domain of the Protein Tyrosine | 99.42 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.42 | |
| KOG0582 | 516 | consensus Ste20-like serine/threonine protein kina | 99.42 | |
| cd05575 | 323 | STKc_SGK Catalytic domain of the Protein Serine/Th | 99.42 | |
| cd05106 | 374 | PTKc_CSF-1R Catalytic domain of the Protein Tyrosi | 99.42 | |
| KOG0032 | 382 | consensus Ca2+/calmodulin-dependent protein kinase | 99.42 | |
| cd05590 | 320 | STKc_nPKC_eta Catalytic domain of the Protein Seri | 99.42 | |
| cd05616 | 323 | STKc_cPKC_beta Catalytic domain of the Protein Ser | 99.41 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.41 | |
| cd05612 | 291 | STKc_PRKX_like Catalytic domain of PRKX-like Prote | 99.41 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.41 | |
| cd07868 | 317 | STKc_CDK8 Catalytic domain of the Serine/Threonine | 99.41 | |
| PTZ00283 | 496 | serine/threonine protein kinase; Provisional | 99.41 | |
| PTZ00267 | 478 | NIMA-related protein kinase; Provisional | 99.4 | |
| cd05589 | 324 | STKc_PKN Catalytic domain of the Protein Serine/Th | 99.4 | |
| cd07862 | 290 | STKc_CDK6 Catalytic domain of the Serine/Threonine | 99.4 | |
| cd05592 | 316 | STKc_nPKC_theta_delta Catalytic domain of the Prot | 99.4 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 99.39 | |
| cd05603 | 321 | STKc_SGK2 Catalytic domain of the Protein Serine/T | 99.39 | |
| cd05054 | 337 | PTKc_VEGFR Catalytic domain of the Protein Tyrosin | 99.39 | |
| PTZ00263 | 329 | protein kinase A catalytic subunit; Provisional | 99.39 | |
| cd05582 | 318 | STKc_RSK_N N-terminal catalytic domain of the Prot | 99.39 | |
| KOG0986 | 591 | consensus G protein-coupled receptor kinase [Signa | 99.39 | |
| cd05091 | 283 | PTKc_Ror2 Catalytic domain of the Protein Tyrosine | 99.39 | |
| KOG0690 | 516 | consensus Serine/threonine protein kinase [Signal | 99.39 | |
| cd05584 | 323 | STKc_p70S6K Catalytic domain of the Protein Serine | 99.39 | |
| PTZ00266 | 1021 | NIMA-related protein kinase; Provisional | 99.39 | |
| cd05593 | 328 | STKc_PKB_gamma Catalytic domain of the Protein Ser | 99.39 | |
| cd05594 | 325 | STKc_PKB_alpha Catalytic domain of the Protein Ser | 99.39 | |
| cd05620 | 316 | STKc_nPKC_delta Catalytic domain of the Protein Se | 99.38 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| cd05591 | 321 | STKc_nPKC_epsilon Catalytic domain of the Protein | 99.38 | |
| cd05619 | 316 | STKc_nPKC_theta Catalytic domain of the Protein Se | 99.38 | |
| KOG4717 | 864 | consensus Serine/threonine protein kinase [Signal | 99.38 | |
| PTZ00426 | 340 | cAMP-dependent protein kinase catalytic subunit; P | 99.38 | |
| KOG0610 | 459 | consensus Putative serine/threonine protein kinase | 99.38 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.37 | |
| cd05570 | 318 | STKc_PKC Catalytic domain of the Protein Serine/Th | 99.37 | |
| cd05094 | 291 | PTKc_TrkC Catalytic domain of the Protein Tyrosine | 99.37 | |
| cd07848 | 287 | STKc_CDKL5 Catalytic domain of the Serine/Threonin | 99.37 | |
| cd05604 | 325 | STKc_SGK3 Catalytic domain of the Protein Serine/T | 99.37 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.37 | |
| PTZ00284 | 467 | protein kinase; Provisional | 99.37 | |
| cd05036 | 277 | PTKc_ALK_LTK Catalytic domain of the Protein Tyros | 99.37 | |
| cd05614 | 332 | STKc_MSK2_N N-terminal catalytic domain of the Pro | 99.37 | |
| cd07867 | 317 | STKc_CDC2L6 Catalytic domain of Serine/Threonine K | 99.37 | |
| cd05608 | 280 | STKc_GRK1 Catalytic domain of the Protein Serine/T | 99.36 | |
| KOG1187 | 361 | consensus Serine/threonine protein kinase [Signal | 99.36 | |
| KOG2345 | 302 | consensus Serine/threonine protein kinase/TGF-beta | 99.36 | |
| cd05104 | 375 | PTKc_Kit Catalytic domain of the Protein Tyrosine | 99.35 | |
| cd05049 | 280 | PTKc_Trk Catalytic domain of the Protein Tyrosine | 99.35 | |
| cd05595 | 323 | STKc_PKB_beta Catalytic domain of the Protein Seri | 99.35 | |
| cd05093 | 288 | PTKc_TrkB Catalytic domain of the Protein Tyrosine | 99.35 | |
| cd05587 | 324 | STKc_cPKC Catalytic domain of the Protein Serine/T | 99.35 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.35 | |
| KOG4721 | 904 | consensus Serine/threonine protein kinase, contain | 99.35 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.34 | |
| PTZ00036 | 440 | glycogen synthase kinase; Provisional | 99.34 | |
| cd05617 | 327 | STKc_aPKC_zeta Catalytic domain of the Protein Ser | 99.34 | |
| cd05615 | 323 | STKc_cPKC_alpha Catalytic domain of the Protein Se | 99.34 | |
| cd05610 | 669 | STKc_MASTL Catalytic domain of the Protein Serine/ | 99.34 | |
| cd05586 | 330 | STKc_Sck1_like Catalytic domain of Suppressor of l | 99.33 | |
| KOG0193 | 678 | consensus Serine/threonine protein kinase RAF [Sig | 99.33 | |
| cd06649 | 331 | PKc_MEK2 Catalytic domain of the dual-specificity | 99.33 | |
| cd05605 | 285 | STKc_GRK4_like Catalytic domain of G protein-coupl | 99.33 | |
| cd07863 | 288 | STKc_CDK4 Catalytic domain of the Serine/Threonine | 99.33 | |
| KOG0584 | 632 | consensus Serine/threonine protein kinase [General | 99.33 | |
| PHA03207 | 392 | serine/threonine kinase US3; Provisional | 99.32 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.32 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.32 | |
| PLN00034 | 353 | mitogen-activated protein kinase kinase; Provision | 99.32 | |
| cd05052 | 263 | PTKc_Abl Catalytic domain of the Protein Tyrosine | 99.32 | |
| cd05111 | 279 | PTK_HER3 Pseudokinase domain of the Protein Tyrosi | 99.32 | |
| cd05607 | 277 | STKc_GRK7 Catalytic domain of the Protein Serine/T | 99.32 | |
| cd05600 | 333 | STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- | 99.32 | |
| cd05072 | 261 | PTKc_Lyn Catalytic domain of the Protein Tyrosine | 99.32 | |
| KOG4645 | 1509 | consensus MAPKKK (MAP kinase kinase kinase) SSK2 a | 99.31 | |
| cd05044 | 269 | PTKc_c-ros Catalytic domain of the Protein Tyrosin | 99.31 | |
| cd05055 | 302 | PTKc_PDGFR Catalytic domain of the Protein Tyrosin | 99.31 | |
| cd08529 | 256 | STKc_FA2-like Catalytic domain of the Protein Seri | 99.31 | |
| cd05618 | 329 | STKc_aPKC_iota Catalytic domain of the Protein Ser | 99.31 | |
| cd07875 | 364 | STKc_JNK1 Catalytic domain of the Serine/Threonine | 99.31 | |
| cd05588 | 329 | STKc_aPKC Catalytic domain of the Protein Serine/T | 99.31 | |
| cd05062 | 277 | PTKc_IGF-1R Catalytic domain of the Protein Tyrosi | 99.31 | |
| cd05105 | 400 | PTKc_PDGFR_alpha Catalytic domain of the Protein T | 99.31 | |
| cd05092 | 280 | PTKc_TrkA Catalytic domain of the Protein Tyrosine | 99.3 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.3 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.3 | |
| cd05630 | 285 | STKc_GRK6 Catalytic domain of the Protein Serine/T | 99.3 | |
| cd05090 | 283 | PTKc_Ror1 Catalytic domain of the Protein Tyrosine | 99.3 | |
| cd06609 | 274 | STKc_MST3_like Catalytic domain of Mammalian Ste20 | 99.3 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.3 | |
| cd07859 | 338 | STKc_TDY_MAPK_plant Catalytic domain of the Serine | 99.3 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.3 | |
| cd08229 | 267 | STKc_Nek7 Catalytic domain of the Protein Serine/T | 99.29 | |
| cd07871 | 288 | STKc_PCTAIRE3 Catalytic domain of the Serine/Threo | 99.29 | |
| cd05596 | 370 | STKc_ROCK Catalytic domain of the Protein Serine/T | 99.29 | |
| cd07876 | 359 | STKc_JNK2 Catalytic domain of the Serine/Threonine | 99.29 | |
| cd05096 | 304 | PTKc_DDR1 Catalytic domain of the Protein Tyrosine | 99.29 | |
| cd05573 | 350 | STKc_ROCK_NDR_like Catalytic domain of ROCK- and N | 99.29 | |
| PHA02882 | 294 | putative serine/threonine kinase; Provisional | 99.29 | |
| cd05035 | 273 | PTKc_Axl_like Catalytic Domain of Axl-like Protein | 99.29 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.28 | |
| cd08228 | 267 | STKc_Nek6 Catalytic domain of the Protein Serine/T | 99.28 | |
| cd05051 | 296 | PTKc_DDR Catalytic domain of the Protein Tyrosine | 99.28 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.28 | |
| cd08219 | 255 | STKc_Nek3 Catalytic domain of the Protein Serine/T | 99.28 | |
| cd06637 | 272 | STKc_TNIK Catalytic domain of the Protein Serine/T | 99.28 | |
| cd05070 | 260 | PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros | 99.28 | |
| cd05043 | 280 | PTK_Ryk Pseudokinase domain of Ryk (Receptor relat | 99.28 | |
| PHA03212 | 391 | serine/threonine kinase US3; Provisional | 99.28 | |
| cd05053 | 293 | PTKc_FGFR Catalytic domain of the Protein Tyrosine | 99.27 | |
| cd05632 | 285 | STKc_GRK5 Catalytic domain of the Protein Serine/T | 99.27 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.27 | |
| cd05098 | 307 | PTKc_FGFR1 Catalytic domain of the Protein Tyrosin | 99.27 | |
| cd08223 | 257 | STKc_Nek4 Catalytic domain of the Protein Serine/T | 99.27 | |
| cd05075 | 272 | PTKc_Axl Catalytic domain of the Protein Tyrosine | 99.27 | |
| cd05045 | 290 | PTKc_RET Catalytic domain of the Protein Tyrosine | 99.27 | |
| cd07874 | 355 | STKc_JNK3 Catalytic domain of the Serine/Threonine | 99.27 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.26 | |
| cd05109 | 279 | PTKc_HER2 Catalytic domain of the Protein Tyrosine | 99.26 | |
| cd06654 | 296 | STKc_PAK1 Catalytic domain of the Protein Serine/T | 99.26 | |
| cd05032 | 277 | PTKc_InsR_like Catalytic domain of Insulin Recepto | 99.26 | |
| cd05108 | 316 | PTKc_EGFR Catalytic domain of the Protein Tyrosine | 99.26 | |
| cd05071 | 262 | PTKc_Src Catalytic domain of the Protein Tyrosine | 99.26 | |
| cd05622 | 371 | STKc_ROCK1 Catalytic domain of the Protein Serine/ | 99.26 | |
| cd05101 | 304 | PTKc_FGFR2 Catalytic domain of the Protein Tyrosin | 99.26 | |
| cd06650 | 333 | PKc_MEK1 Catalytic domain of the dual-specificity | 99.26 | |
| cd06636 | 282 | STKc_MAP4K4_6 Catalytic domain of the Protein Seri | 99.26 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.26 | |
| cd05099 | 314 | PTKc_FGFR4 Catalytic domain of the Protein Tyrosin | 99.26 | |
| cd05116 | 257 | PTKc_Syk Catalytic domain of the Protein Tyrosine | 99.26 | |
| cd05598 | 376 | STKc_LATS Catalytic domain of the Protein Serine/T | 99.26 | |
| KOG0604 | 400 | consensus MAP kinase-activated protein kinase 2 [S | 99.25 | |
| cd05082 | 256 | PTKc_Csk Catalytic domain of the Protein Tyrosine | 99.25 | |
| cd05601 | 330 | STKc_CRIK Catalytic domain of the Protein Serine/T | 99.25 | |
| cd07869 | 303 | STKc_PFTAIRE1 Catalytic domain of the Serine/Threo | 99.25 | |
| cd05069 | 260 | PTKc_Yes Catalytic domain of the Protein Tyrosine | 99.25 | |
| cd05599 | 364 | STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel | 99.25 | |
| cd05078 | 258 | PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain | 99.25 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.25 | |
| cd07831 | 282 | STKc_MOK Catalytic domain of the Serine/Threonine | 99.24 | |
| cd06619 | 279 | PKc_MKK5 Catalytic domain of the dual-specificity | 99.24 | |
| cd06616 | 288 | PKc_MKK4 Catalytic domain of the dual-specificity | 99.24 | |
| cd07878 | 343 | STKc_p38beta_MAPK11 Catalytic domain of the Serine | 99.24 | |
| cd05625 | 382 | STKc_LATS1 Catalytic domain of the Protein Serine/ | 99.24 | |
| cd05148 | 261 | PTKc_Srm_Brk Catalytic domain of the Protein Tyros | 99.24 | |
| cd05033 | 266 | PTKc_EphR Catalytic domain of Ephrin Receptor Prot | 99.24 | |
| KOG0574 | 502 | consensus STE20-like serine/threonine kinase MST [ | 99.24 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.23 | |
| cd06625 | 263 | STKc_MEKK3_like Catalytic domain of MAP/ERK kinase | 99.23 | |
| cd00192 | 262 | PTKc Catalytic domain of Protein Tyrosine Kinases. | 99.23 | |
| cd05626 | 381 | STKc_LATS2 Catalytic domain of the Protein Serine/ | 99.23 | |
| cd05064 | 266 | PTKc_EphR_A10 Catalytic domain of the Protein Tyro | 99.23 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 99.23 | |
| PHA03211 | 461 | serine/threonine kinase US3; Provisional | 99.23 | |
| cd05067 | 260 | PTKc_Lck_Blk Catalytic domain of the Protein Tyros | 99.23 | |
| cd05621 | 370 | STKc_ROCK2 Catalytic domain of the Protein Serine/ | 99.23 | |
| cd05627 | 360 | STKc_NDR2 Catalytic domain of the Protein Serine/T | 99.23 | |
| cd08528 | 269 | STKc_Nek10 Catalytic domain of the Protein Serine/ | 99.23 | |
| cd06608 | 275 | STKc_myosinIII_like Catalytic domain of Class III | 99.23 | |
| cd05097 | 295 | PTKc_DDR_like Catalytic domain of Discoidin Domain | 99.23 | |
| cd06642 | 277 | STKc_STK25-YSK1 Catalytic domain of the Protein Se | 99.22 | |
| cd08224 | 267 | STKc_Nek6_Nek7 Catalytic domain of the Protein Ser | 99.22 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.22 | |
| cd05060 | 257 | PTKc_Syk_like Catalytic domain of Spleen Tyrosine | 99.22 | |
| cd06645 | 267 | STKc_MAP4K3 Catalytic domain of the Protein Serine | 99.22 | |
| KOG0586 | 596 | consensus Serine/threonine protein kinase [General | 99.22 | |
| cd07853 | 372 | STKc_NLK Catalytic domain of the Serine/Threonine | 99.22 | |
| cd06655 | 296 | STKc_PAK2 Catalytic domain of the Protein Serine/T | 99.22 | |
| cd05040 | 257 | PTKc_Ack_like Catalytic domain of the Protein Tyro | 99.22 | |
| cd05073 | 260 | PTKc_Hck Catalytic domain of the Protein Tyrosine | 99.22 | |
| cd08220 | 256 | STKc_Nek8 Catalytic domain of the Protein Serine/T | 99.21 | |
| cd08225 | 257 | STKc_Nek5 Catalytic domain of the Protein Serine/T | 99.21 | |
| cd05088 | 303 | PTKc_Tie2 Catalytic domain of the Protein Tyrosine | 99.21 | |
| cd05629 | 377 | STKc_NDR_like_fungal Catalytic domain of Fungal Nu | 99.21 | |
| cd05089 | 297 | PTKc_Tie1 Catalytic domain of the Protein Tyrosine | 99.21 | |
| cd07861 | 285 | STKc_CDK1_euk Catalytic domain of the Serine/Threo | 99.21 | |
| cd05095 | 296 | PTKc_DDR2 Catalytic domain of the Protein Tyrosine | 99.21 | |
| KOG0603 | 612 | consensus Ribosomal protein S6 kinase [Signal tran | 99.21 | |
| cd06610 | 267 | STKc_OSR1_SPAK Catalytic domain of the Protein Ser | 99.21 | |
| KOG1989 | 738 | consensus ARK protein kinase family [Signal transd | 99.21 | |
| cd07872 | 309 | STKc_PCTAIRE2 Catalytic domain of the Serine/Threo | 99.21 | |
| cd05084 | 252 | PTKc_Fes Catalytic domain of the Protein Tyrosine | 99.21 | |
| cd05107 | 401 | PTKc_PDGFR_beta Catalytic domain of the Protein Ty | 99.21 | |
| cd06620 | 284 | PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr | 99.21 | |
| cd06643 | 282 | STKc_SLK Catalytic domain of the Protein Serine/Th | 99.2 | |
| cd05068 | 261 | PTKc_Frk_like Catalytic domain of Fyn-related kina | 99.2 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.2 | |
| cd05057 | 279 | PTKc_EGFR_like Catalytic domain of Epidermal Growt | 99.2 | |
| KOG0580 | 281 | consensus Serine/threonine protein kinase [Cell cy | 99.2 | |
| cd05628 | 363 | STKc_NDR1 Catalytic domain of the Protein Serine/T | 99.2 | |
| cd05050 | 288 | PTKc_Musk Catalytic domain of the Protein Tyrosine | 99.2 | |
| cd06648 | 285 | STKc_PAK_II Catalytic domain of the Protein Serine | 99.2 | |
| cd06640 | 277 | STKc_MST4 Catalytic domain of the Protein Serine/T | 99.2 | |
| cd06659 | 297 | STKc_PAK6 Catalytic domain of the Protein Serine/T | 99.2 | |
| KOG0579 | 1187 | consensus Ste20-like serine/threonine protein kina | 99.2 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.19 | |
| cd05100 | 334 | PTKc_FGFR3 Catalytic domain of the Protein Tyrosin | 99.19 | |
| cd05047 | 270 | PTKc_Tie Catalytic domain of Tie Protein Tyrosine | 99.19 | |
| cd05077 | 262 | PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th | 99.19 | |
| KOG0661 | 538 | consensus MAPK related serine/threonine protein ki | 99.19 | |
| PF00069 | 260 | Pkinase: Protein kinase domain Protein kinase; unc | 99.19 | |
| cd07873 | 301 | STKc_PCTAIRE1 Catalytic domain of the Serine/Threo | 99.19 | |
| cd05074 | 273 | PTKc_Tyro3 Catalytic domain of the Protein Tyrosin | 99.19 | |
| cd08218 | 256 | STKc_Nek1 Catalytic domain of the Protein Serine/T | 99.19 | |
| cd06612 | 256 | STKc_MST1_2 Catalytic domain of the Protein Serine | 99.19 | |
| cd05085 | 250 | PTKc_Fer Catalytic domain of the Protein Tyrosine | 99.19 | |
| PF07714 | 259 | Pkinase_Tyr: Protein tyrosine kinase Protein kinas | 99.19 | |
| cd05061 | 288 | PTKc_InsR Catalytic domain of the Protein Tyrosine | 99.19 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.19 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.19 | |
| cd07839 | 284 | STKc_CDK5 Catalytic domain of the Serine/Threonine | 99.19 | |
| cd06658 | 292 | STKc_PAK5 Catalytic domain of the Protein Serine/T | 99.19 | |
| cd06638 | 286 | STKc_myosinIIIA Catalytic domain of the Protein Se | 99.18 | |
| cd05058 | 262 | PTKc_Met_Ron Catalytic domain of the Protein Tyros | 99.18 | |
| cd05114 | 256 | PTKc_Tec_Rlk Catalytic domain of the Protein Tyros | 99.18 | |
| cd05115 | 257 | PTKc_Zap-70 Catalytic domain of the Protein Tyrosi | 99.18 | |
| KOG0607 | 463 | consensus MAP kinase-interacting kinase and relate | 99.18 | |
| cd06628 | 267 | STKc_MAPKKK_Byr2_like Catalytic domain of fungal B | 99.18 | |
| cd08217 | 265 | STKc_Nek2 Catalytic domain of the Protein Serine/T | 99.18 | |
| cd06624 | 268 | STKc_ASK Catalytic domain of the Protein Serine/Th | 99.18 | |
| cd05609 | 305 | STKc_MAST Catalytic domain of the Protein Serine/T | 99.18 | |
| cd07866 | 311 | STKc_BUR1 Catalytic domain of the Serine/Threonine | 99.18 | |
| PHA03390 | 267 | pk1 serine/threonine-protein kinase 1; Provisional | 99.18 | |
| cd05063 | 268 | PTKc_EphR_A2 Catalytic domain of the Protein Tyros | 99.18 | |
| KOG0695 | 593 | consensus Serine/threonine protein kinase [Signal | 99.17 | |
| cd06613 | 262 | STKc_MAP4K3_like Catalytic domain of Mitogen-activ | 99.17 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 99.17 | |
| cd05574 | 316 | STKc_phototropin_like Catalytic domain of Phototro | 99.17 | |
| cd05041 | 251 | PTKc_Fes_like Catalytic domain of Fes-like Protein | 99.17 | |
| cd06622 | 286 | PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS | 99.17 | |
| cd05611 | 260 | STKc_Rim15_like Catalytic domain of fungal Rim15-l | 99.17 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.17 | |
| cd05103 | 343 | PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi | 99.17 | |
| cd05080 | 283 | PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the | 99.17 | |
| cd05110 | 303 | PTKc_HER4 Catalytic domain of the Protein Tyrosine | 99.16 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.16 | |
| cd06646 | 267 | STKc_MAP4K5 Catalytic domain of the Protein Serine | 99.16 | |
| cd07842 | 316 | STKc_CDK8_like Catalytic domain of Cyclin-Dependen | 99.16 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.16 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.16 | |
| cd08221 | 256 | STKc_Nek9 Catalytic domain of the Protein Serine/T | 99.16 | |
| cd05580 | 290 | STKc_PKA Catalytic domain of the Protein Serine/Th | 99.16 | |
| cd05059 | 256 | PTKc_Tec_like Catalytic domain of Tec-like Protein | 99.16 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.15 | |
| cd05056 | 270 | PTKc_FAK Catalytic domain of the Protein Tyrosine | 99.15 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.15 | |
| cd06917 | 277 | STKc_NAK1_like Catalytic domain of Fungal Nak1-lik | 99.15 | |
| cd05087 | 269 | PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein | 99.15 | |
| KOG0197 | 468 | consensus Tyrosine kinases [Signal transduction me | 99.15 | |
| cd06644 | 292 | STKc_STK10_LOK Catalytic domain of the Protein Ser | 99.15 | |
| cd05113 | 256 | PTKc_Btk_Bmx Catalytic domain of the Protein Tyros | 99.15 | |
| cd07837 | 295 | STKc_CdkB_plant Catalytic domain of the Serine/Thr | 99.14 | |
| cd06639 | 291 | STKc_myosinIIIB Catalytic domain of the Protein Se | 99.14 | |
| cd06605 | 265 | PKc_MAPKK Catalytic domain of the dual-specificity | 99.14 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=322.33 Aligned_cols=312 Identities=23% Similarity=0.369 Sum_probs=268.8
Q ss_pred hhcCCCCCCCccccceeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEe
Q 008820 210 ELLGAENSDGADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWS 278 (552)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd 278 (552)
+..++...++..+.++.|++.+..++++..|.++++|+ .+||..+|.|++|+ |+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 34455667788899999999999999999999999998 47999999999999 99999999999999999
Q ss_pred CCCCeEE-EEEeCCCCCeEEEEEecC----CCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCC
Q 008820 279 LKDFSHV-HTFKGHDHKVMAVVYVDE----DQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR 353 (552)
Q Consensus 279 ~~~~~~~-~~~~~h~~~v~~v~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (552)
.++|+++ ..+.+|...|++++|.|- ...+|++++.||+++|||+..+..... ..+ +..++.|+.+.|.
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~---lsg----HT~~VTCvrwGG~ 258 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT---LSG----HTASVTCVRWGGE 258 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE---ecc----CccceEEEEEcCC
Confidence 9998765 678999999999999862 345889999999999999986543333 333 3446788899866
Q ss_pred -EEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-------------CC-------------------------E
Q 008820 354 -YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-------------NG-------------------------V 394 (552)
Q Consensus 354 -~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-------------~~-------------------------~ 394 (552)
++++|+.|++|++|+...|.+...+++|...|+.++.+ +. .
T Consensus 259 gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~er 338 (480)
T KOG0271|consen 259 GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGER 338 (480)
T ss_pred ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcce
Confidence 99999999999999999999999999999999999876 22 3
Q ss_pred EEEEeCCCcEEEEECCCCc-eeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEe--CCcceeeeecccceEEEEE
Q 008820 395 LYSGSRDGTIRLWSLSDHS-LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR--NDKFMKSMQTHKGSVFAVF 471 (552)
Q Consensus 395 l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd--~~~~~~~~~~h~~~v~~v~ 471 (552)
+++|+.|.++.+|+....+ ++....+| ...+.. +.|+||++++++++.|..|++|| .++.+.++.+|-+.|+.++
T Consensus 339 lVSgsDd~tlflW~p~~~kkpi~rmtgH-q~lVn~-V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva 416 (480)
T KOG0271|consen 339 LVSGSDDFTLFLWNPFKSKKPITRMTGH-QALVNH-VSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA 416 (480)
T ss_pred eEEecCCceEEEecccccccchhhhhch-hhheee-EEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE
Confidence 9999999999999986544 66666665 345555 69999999999999999999998 5678899999999999999
Q ss_pred e--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEEeCCCeEEEEE
Q 008820 472 L--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGCADRTVKIAL 535 (552)
Q Consensus 472 ~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~Dg~v~iw~ 535 (552)
| |.++|++||.|.++++||+++.++...+..+ ...|.++.|+| .++++|+.|..+++|.
T Consensus 417 wsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh-----~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 417 WSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGH-----ADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eccCccEEEEcCCCceEEEEEeeeeeecccCCCC-----CceEEEEEecCCCceeecCCCceEEEeec
Confidence 9 8889999999999999999998887765543 77899999995 3589999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-44 Score=320.91 Aligned_cols=290 Identities=24% Similarity=0.365 Sum_probs=246.7
Q ss_pred EEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC
Q 008820 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (552)
Q Consensus 246 ~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (552)
..+.||.++|.|++|+ +..|+||+.|.++|+||+.+..+..+.++|...|.|++|+|++. .+++|+.||+|++||..
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk-~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGK-KIASGSKDGSIRLWDPK 187 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcc-hhhccccCCeEEEecCC
Confidence 4588999999999999 99999999999999999999999999999999999999999876 67999999999999988
Q ss_pred CCCCCccccccccCCCceeeeEEEEe-------eCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CCEE
Q 008820 324 FPLGHEPLKKWNEEKDWRYSGIHALT-------TSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NGVL 395 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l 395 (552)
+++.. ...+.+|.. .|.+++ |..++|++++.||.|+|||+..+.++..+.+|+.+|+|+.|- ++++
T Consensus 188 tg~~~--g~~l~gH~K----~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gli 261 (480)
T KOG0271|consen 188 TGQQI--GRALRGHKK----WITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLI 261 (480)
T ss_pred CCCcc--cccccCccc----ceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceE
Confidence 76533 233334333 233333 345689999999999999999999999999999999999999 7799
Q ss_pred EEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEE-----------EcCCCC-------------------------EE
Q 008820 396 YSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLS-----------LTAVQH-------------------------TL 439 (552)
Q Consensus 396 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----------~s~~~~-------------------------~l 439 (552)
++|+.|++|++|+...|.+...+++|.. .+.. ++ |.|.++ .+
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r~lkGHah-wvN~-lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erl 339 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCRELKGHAH-WVNH-LALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERL 339 (480)
T ss_pred EecCCCceEEEEEccchhHHHhhcccch-heee-eeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCccee
Confidence 9999999999999999999988887742 2222 23 334343 49
Q ss_pred EEEECCCcEEEEeC---CcceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEE
Q 008820 440 VVSHESGSIKVWRN---DKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITA 514 (552)
Q Consensus 440 ~~g~~dg~i~iwd~---~~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 514 (552)
++|+.|.++.+|+. .+++....+|..-|+.+.| |+++++++|.|..|++||.++++....+..+ ...|..
T Consensus 340 VSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH-----v~~VYq 414 (480)
T KOG0271|consen 340 VSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH-----VAAVYQ 414 (480)
T ss_pred EEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc-----cceeEE
Confidence 99999999999984 4578888999999998876 9999999999999999999999988877653 678999
Q ss_pred EEEeCC--eEEEEeCCCeEEEEEecCCcceeEEEeccc
Q 008820 515 LLYWQG--KLFVGCADRTVKIALCNRQIPEIFSLLLHI 550 (552)
Q Consensus 515 l~~~~~--~l~s~s~Dg~v~iw~~~~~~~~~~~~~gh~ 550 (552)
++|+.+ .|++||.|.++++|++. +.+..+.+.||.
T Consensus 415 vawsaDsRLlVS~SkDsTLKvw~V~-tkKl~~DLpGh~ 451 (480)
T KOG0271|consen 415 VAWSADSRLLVSGSKDSTLKVWDVR-TKKLKQDLPGHA 451 (480)
T ss_pred EEeccCccEEEEcCCCceEEEEEee-eeeecccCCCCC
Confidence 999954 48899999999999998 566677888885
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=364.87 Aligned_cols=279 Identities=18% Similarity=0.215 Sum_probs=213.9
Q ss_pred eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCC----e----EEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcE
Q 008820 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF----S----HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGI 317 (552)
Q Consensus 248 l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~----~----~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i 317 (552)
+.+|.+.|.+++|+ ++++++|+.|++|+|||..+. . +...+. +...+.+++|++....++++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 45699999999999 899999999999999997532 1 223333 356899999998777889999999999
Q ss_pred EEEeCCCCCCCccccccccCCCceeeeEEEEee-CCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe---CC
Q 008820 318 FVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NG 393 (552)
Q Consensus 318 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~ 393 (552)
++||+.++... ..+..+.. .. ...++++ ++++|++|+.||.|++||++++..+..+..+ ..|.++.|. +.
T Consensus 558 ~lWd~~~~~~~---~~~~~H~~-~V-~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~ 631 (793)
T PLN00181 558 QVWDVARSQLV---TEMKEHEK-RV-WSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGR 631 (793)
T ss_pred EEEECCCCeEE---EEecCCCC-CE-EEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCC
Confidence 99999865432 33333332 11 2234554 6789999999999999999999998888754 679999996 34
Q ss_pred EEEEEeCCCcEEEEECCCCc-eeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--------cceeeeeccc
Q 008820 394 VLYSGSRDGTIRLWSLSDHS-LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--------KFMKSMQTHK 464 (552)
Q Consensus 394 ~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--------~~~~~~~~h~ 464 (552)
.+++|+.||.|++||+++.+ .+..+..| ...+.. +.|. ++.++++++.|++|++||+. +++..+.+|.
T Consensus 632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h-~~~V~~-v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~ 708 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPKLPLCTMIGH-SKTVSY-VRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT 708 (793)
T ss_pred EEEEEeCCCeEEEEECCCCCccceEecCC-CCCEEE-EEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC
Confidence 99999999999999998876 45555554 445555 5675 67899999999999999975 3567888999
Q ss_pred ceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeee--ccC------CCcccCcceEEEEEeCC--eEEEEeCCCeEE
Q 008820 465 GSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDV--IPT------GAIPCGSVITALLYWQG--KLFVGCADRTVK 532 (552)
Q Consensus 465 ~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~--~~~------~~~~~~~~v~~l~~~~~--~l~s~s~Dg~v~ 532 (552)
..+.++.+ ++.+|++|+.|+.|++|+.......... ... ....+...|.+++|+++ .|++|+.||.|+
T Consensus 709 ~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~ 788 (793)
T PLN00181 709 NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIK 788 (793)
T ss_pred CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEE
Confidence 98877765 7899999999999999998654322111 100 01122456999999953 599999999999
Q ss_pred EEEe
Q 008820 533 IALC 536 (552)
Q Consensus 533 iw~~ 536 (552)
||++
T Consensus 789 i~~~ 792 (793)
T PLN00181 789 ILEM 792 (793)
T ss_pred EEec
Confidence 9986
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=303.57 Aligned_cols=274 Identities=22% Similarity=0.313 Sum_probs=242.9
Q ss_pred cCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecC-CCCEEEEEcCCCcEEEEeCCCCC
Q 008820 250 GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDE-DQPLCISGDSGGGIFVWSFSFPL 326 (552)
Q Consensus 250 ~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~~ 326 (552)
|-+.+|..+.|+ ++.|+|||.+|.++||+..+...+.+|.+|.+.|.++.|+|. +..-+++|+.||++++|++++..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 567899999999 999999999999999999999999999999999999999998 46688999999999999998653
Q ss_pred CCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeCCCcE
Q 008820 327 GHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGTI 404 (552)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i 404 (552)
++..+.+|. ....-.+|+|+|++|+|++.|.+-++||+++++.+...+||...|.+++|. ++ ++++|+.|..-
T Consensus 253 ---~l~~l~gH~--~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~ 327 (459)
T KOG0272|consen 253 ---PLQDLEGHL--ARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLG 327 (459)
T ss_pred ---chhhhhcch--hhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchh
Confidence 444444443 223345899999999999999999999999999999999999999999999 44 99999999999
Q ss_pred EEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEe---cCCEEEE
Q 008820 405 RLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL---EGKWLFT 479 (552)
Q Consensus 405 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~---~~~~l~s 479 (552)
+|||+++|+++..+.+| ...+.. +.|+|+|..+++|+.|++++|||++ +.+.++.+|.+-|+.+.+ .|.+|+|
T Consensus 328 RvWDlRtgr~im~L~gH-~k~I~~-V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~T 405 (459)
T KOG0272|consen 328 RVWDLRTGRCIMFLAGH-IKEILS-VAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVT 405 (459)
T ss_pred heeecccCcEEEEeccc-ccceee-EeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEE
Confidence 99999999999999986 455666 6999999999999999999999976 478888999999999887 6889999
Q ss_pred EeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCe--EEEEeCCCeEEEEE
Q 008820 480 GGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK--LFVGCADRTVKIAL 535 (552)
Q Consensus 480 gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~s~s~Dg~v~iw~ 535 (552)
+|.|+++++|...+..+...+..+ ...|.+++++++. +++++.|.++++|.
T Consensus 406 asyD~t~kiWs~~~~~~~ksLaGH-----e~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 406 ASYDNTVKIWSTRTWSPLKSLAGH-----EGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccCcceeeecCCCcccchhhcCC-----ccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999988777766554 7789999999644 99999999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=289.08 Aligned_cols=267 Identities=22% Similarity=0.317 Sum_probs=235.2
Q ss_pred CCCCccccceeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc----CCEEEEEeCCCcEEEEeCCCC
Q 008820 216 NSDGADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG----GGFLFSSSFDKSIHVWSLKDF 282 (552)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s----~~~l~s~s~dg~I~iwd~~~~ 282 (552)
-.+..++....++.+++.+++++.+|..++|. |.||.+.|.++.|+ +..+|||+.||++++|++++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 34556788999999999999999999999986 78999999999999 358999999999999999999
Q ss_pred eEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCC
Q 008820 283 SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR 362 (552)
Q Consensus 283 ~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg 362 (552)
.++..+.+|...|..++|+|+|. +|+|++.|.+-++||+++.........+ .. . ....+|.+||..+++|+.|.
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~ElL~QEGH---s~-~-v~~iaf~~DGSL~~tGGlD~ 325 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSELLLQEGH---SK-G-VFSIAFQPDGSLAATGGLDS 325 (459)
T ss_pred cchhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccchhhHhhccc---cc-c-cceeEecCCCceeeccCccc
Confidence 99999999999999999999766 7899999999999999976544333322 21 1 12347889999999999999
Q ss_pred cEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcC-CCCEE
Q 008820 363 TIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA-VQHTL 439 (552)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l 439 (552)
.-++||+++|.++..+.+|..+|.+|+|+ ++ .++|||.|++++|||++..+.+.++..|. +.+.. +.|+| .|.+|
T Consensus 326 ~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~-nlVS~-Vk~~p~~g~fL 403 (459)
T KOG0272|consen 326 LGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHS-NLVSQ-VKYSPQEGYFL 403 (459)
T ss_pred hhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccccc-chhhh-eEecccCCeEE
Confidence 99999999999999999999999999999 44 89999999999999999999999988874 44444 68887 78999
Q ss_pred EEEECCCcEEEEeCC--cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEe
Q 008820 440 VVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQE 490 (552)
Q Consensus 440 ~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd 490 (552)
++++.|++++||... .+++++.||.+.|.++.. |+++++|++.|.++++|.
T Consensus 404 ~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 404 VTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999855 589999999999999875 999999999999999995
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=268.39 Aligned_cols=282 Identities=21% Similarity=0.388 Sum_probs=240.6
Q ss_pred EeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCC
Q 008820 247 DLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF 324 (552)
Q Consensus 247 ~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 324 (552)
.+.||.++|.|+++. +.+|+||+.|++|+|||+.+|+...++.||-..|..+++++-.. ++++++.|+.|+.||++.
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHp-YlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHP-YLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCc-eEEEecCCCeeEEEechh
Confidence 378999999999999 89999999999999999999999999999999999999988544 789999999999999985
Q ss_pred CCCCccccccccCCCceeeeEEE--EeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeC
Q 008820 325 PLGHEPLKKWNEEKDWRYSGIHA--LTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSR 400 (552)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~ 400 (552)
. +.++.+.+| ...+.+ +.|.-+.|++|+.|.++++||+++...+..+.+|..+|.++.+. +..+++||.
T Consensus 225 n---kvIR~YhGH----lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 225 N---KVIRHYHGH----LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred h---hhHHHhccc----cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 4 344444443 334444 45556799999999999999999999999999999999999998 779999999
Q ss_pred CCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEe-cCCEE
Q 008820 401 DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL-EGKWL 477 (552)
Q Consensus 401 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~-~~~~l 477 (552)
|++|++||++.|+.+.++..+.. . ..+++.+|....+++++.| .|+-|++. ..++.+.+|..-|++++. +..++
T Consensus 298 D~tvrlWDl~agkt~~tlt~hkk-s-vral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~ 374 (460)
T KOG0285|consen 298 DSTVRLWDLRAGKTMITLTHHKK-S-VRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVL 374 (460)
T ss_pred CceEEEeeeccCceeEeeecccc-e-eeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceE
Confidence 99999999999999999887743 3 3347899999999999888 69999965 456779999999999998 67799
Q ss_pred EEEeCCCeEEEEecCCCeeee---eeccCCCcccCcceEEEEEe--CCeEEEEeCCCeEEEEEecCC
Q 008820 478 FTGGWDKTVSVQELAGDEFEE---DVIPTGAIPCGSVITALLYW--QGKLFVGCADRTVKIALCNRQ 539 (552)
Q Consensus 478 ~sgs~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~Dg~v~iw~~~~~ 539 (552)
++|+++|.+.+||.+++...+ .....+.+.....|.+.+|. ..+|++|..|.+|++|.-+..
T Consensus 375 ~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 375 VSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred EEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 999999999999999774433 23445566667789999998 356999999999999987644
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=278.61 Aligned_cols=275 Identities=21% Similarity=0.339 Sum_probs=236.5
Q ss_pred cCccceEEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCc
Q 008820 250 GHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHE 329 (552)
Q Consensus 250 ~H~~~V~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 329 (552)
.....|.|+.+....+++|..|++|+|||.++..+.+.+.||++.|.|+.| +..++++|+.|.+|++||++++...+
T Consensus 195 e~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy---d~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 195 ENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY---DERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred ccCCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec---cceEEEecCCCceEEEEeccCCchhh
Confidence 356789999999999999999999999999999999999999999999998 55699999999999999999876555
Q ss_pred cccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCc---eeEEecCCCCCeEEEEEeCCEEEEEeCCCcEEE
Q 008820 330 PLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT---LSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRL 406 (552)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~i 406 (552)
.+.. +...+..+-.++.++++++.|.++.+||+.... +.+.+.||...|+.+.|++.++++++.|.+|++
T Consensus 272 tlih-------HceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikv 344 (499)
T KOG0281|consen 272 TLIH-------HCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKV 344 (499)
T ss_pred HHhh-------hcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEE
Confidence 4433 333566778888999999999999999997654 344678999999999999999999999999999
Q ss_pred EECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeC--CcceeeeecccceEEEEEecCCEEEEEeCCC
Q 008820 407 WSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFMKSMQTHKGSVFAVFLEGKWLFTGGWDK 484 (552)
Q Consensus 407 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~--~~~~~~~~~h~~~v~~v~~~~~~l~sgs~dg 484 (552)
|++.+++.+.++.+|..+. .+..-.++++++|+.|.+|++||. +.+++.+++|+.-|.++.||.+.+++|+.||
T Consensus 345 W~~st~efvRtl~gHkRGI----AClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDG 420 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGI----ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDG 420 (499)
T ss_pred Eeccceeeehhhhcccccc----eehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccc
Confidence 9999999999998875543 456667999999999999999995 5789999999999999999999999999999
Q ss_pred eEEEEecCCCeeee----eeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEecC
Q 008820 485 TVSVQELAGDEFEE----DVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCNR 538 (552)
Q Consensus 485 ~i~iwd~~~~~~~~----~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~~ 538 (552)
+|++||+..+.-.. ++-....+.+.+.|..+.|..-++++++.|.+|-|||+..
T Consensus 421 kikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 421 KIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred eEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCC
Confidence 99999998653221 1111222345778999999888999999999999999974
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=255.15 Aligned_cols=279 Identities=17% Similarity=0.253 Sum_probs=235.7
Q ss_pred EEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC
Q 008820 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (552)
Q Consensus 246 ~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (552)
+.|+||.+.|.++.|+ .++++++|.||.+.|||.-+....+.++-....|..++|+|.++ ++++|+.|+...||++.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~-~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGN-FVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCC-eEEecCcCceeEEEecc
Confidence 6799999999999999 89999999999999999999998999998999999999999665 88999999999999998
Q ss_pred CCCCC---ccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeC---CEEEE
Q 008820 324 FPLGH---EPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN---GVLYS 397 (552)
Q Consensus 324 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s 397 (552)
+.... ...+.+..|..+ . .+..|. +...|++++.|.++.+||+++++.+..|.+|.+.|.++.+++ +.+++
T Consensus 128 ~~d~~g~~~v~r~l~gHtgy-l-ScC~f~-dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvS 204 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGY-L-SCCRFL-DDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVS 204 (343)
T ss_pred cccccccceeeeeecCccce-e-EEEEEc-CCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEe
Confidence 65322 233334444432 2 222333 356899999999999999999999999999999999999984 59999
Q ss_pred EeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeeec--ccceEEEEEe-
Q 008820 398 GSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQT--HKGSVFAVFL- 472 (552)
Q Consensus 398 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~--h~~~v~~v~~- 472 (552)
|+.|++.++||+|.+.++++|.+|. ..+.+ +.|.|+|.-+++|+.|++.++||++. .+..+.. -..+|+++.|
T Consensus 205 g~cD~~aklWD~R~~~c~qtF~ghe-sDINs-v~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS 282 (343)
T KOG0286|consen 205 GGCDKSAKLWDVRSGQCVQTFEGHE-SDINS-VRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFS 282 (343)
T ss_pred cccccceeeeeccCcceeEeecccc-cccce-EEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEc
Confidence 9999999999999999999999885 44555 69999999999999999999999875 4444442 2357788888
Q ss_pred -cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCe--EEEEeCCCeEEEEE
Q 008820 473 -EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK--LFVGCADRTVKIAL 535 (552)
Q Consensus 473 -~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~s~s~Dg~v~iw~ 535 (552)
.|++|++|..|.++.+||.-.++....+..+ ...|+++..+|+. +++||.|..+|||.
T Consensus 283 ~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH-----eNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 283 KSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH-----ENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccccEEEeeecCCceeEeeccccceEEEeecc-----CCeeEEEEECCCCcEEEecchhHheeecC
Confidence 8999999999999999999877766665543 7789999999654 88999999999994
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=266.03 Aligned_cols=358 Identities=20% Similarity=0.297 Sum_probs=267.1
Q ss_pred hcccCCCCCcch---hhHHHHHHhhhcCccccccccccccccccccccccccccccCCCcccccccchhhhcCCCCCCCc
Q 008820 144 CLNFDPGCRPLL---TNVWKCIRELIIKPEFDKMIRFAGPVNLENENHCLVLGELSCLPKERLETEDKDELLGAENSDGA 220 (552)
Q Consensus 144 ~l~~~p~~R~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (552)
.....|..-|+. .++...++.++ +....+....+|+|++.+++.+.+...+..... .+.+.
T Consensus 20 aVpD~p~~iP~~~~r~gLs~ivN~ll---------~se~~~~K~~pFDFLi~gelLRtsL~e~l~~kg---iSsE~---- 83 (423)
T KOG0313|consen 20 AVPDVPFAIPTSVERYGLSNIVNKLL---------KSENGFWKPVPFDFLIKGELLRTSLDEHLEEKG---ISSEE---- 83 (423)
T ss_pred CCCCcceeccCcceEccHHHHHHHHH---------hccCCcCCCCcceEEEcceeeeccHHHHHHHcC---cChhh----
Confidence 344455555653 25555666655 224445677899999999999998876442221 11111
Q ss_pred cccceeeecCcceEEEeeCCCeEEEEEeecCccceEEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEE
Q 008820 221 DIDQARAAGGVKDLVNGLSKGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVY 300 (552)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~ 300 (552)
+.. ..++-+...+ ..+ .---|.++|.++...+++++||++||++++||. .|+...++.+|.++|.+++|
T Consensus 84 -~le-------IEYv~~~~aP-~pl-~~~~hdDWVSsv~~~~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~ 152 (423)
T KOG0313|consen 84 -ILE-------IEYVEAITAP-KPL-QCFLHDDWVSSVKGASKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAW 152 (423)
T ss_pred -eeE-------EEEEEecCCC-Ccc-ccccchhhhhhhcccCceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEE
Confidence 000 1111111111 111 123599999999999999999999999999995 68999999999999999998
Q ss_pred ecCCC--CEEEEEcCCCcEEEEeCCCCCCCcccc-ccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCC------
Q 008820 301 VDEDQ--PLCISGDSGGGIFVWSFSFPLGHEPLK-KWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLD------ 371 (552)
Q Consensus 301 ~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~------ 371 (552)
...+. ..+++++.|.++++|.++.+....... ...+|.. . ....+...++..+++|+.|.+|++|+..+
T Consensus 153 v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~-~-V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~ 230 (423)
T KOG0313|consen 153 VIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKR-S-VDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDEL 230 (423)
T ss_pred EecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccccc-c-eeEEEecCCCCeEEeecccceeeecccCCCccccc
Confidence 75433 468999999999999998765433222 2223322 1 12235567888999999999999999321
Q ss_pred -------------------CceeEEecCCCCCeEEEEEe-CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEE
Q 008820 372 -------------------GTLSCTMSGHKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLS 431 (552)
Q Consensus 372 -------------------~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 431 (552)
+.++.++.+|..+|.++.|+ ...+++++.|.+|+.||+.++..+.++.... ...+ +.
T Consensus 231 E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~k--sl~~-i~ 307 (423)
T KOG0313|consen 231 ESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNK--SLNC-IS 307 (423)
T ss_pred cccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCc--ceeE-ee
Confidence 24566789999999999999 5599999999999999999999988887642 2344 68
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCc-----ceeeeecccceEEEEEe---cCCEEEEEeCCCeEEEEecCCCe-eeeeecc
Q 008820 432 LTAVQHTLVVSHESGSIKVWRNDK-----FMKSMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQELAGDE-FEEDVIP 502 (552)
Q Consensus 432 ~s~~~~~l~~g~~dg~i~iwd~~~-----~~~~~~~h~~~v~~v~~---~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~ 502 (552)
.+|..++|++|+.|..+++||.++ ..+++.+|.+.|.++.| +...|++|+.|+++++||+++.. ....+..
T Consensus 308 ~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~ 387 (423)
T KOG0313|consen 308 YSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG 387 (423)
T ss_pred cccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc
Confidence 899999999999999999999764 46788999999999987 77899999999999999999765 3333333
Q ss_pred CCCcccCcceEEEEEeCC-eEEEEeCCCeEEEEEecC
Q 008820 503 TGAIPCGSVITALLYWQG-KLFVGCADRTVKIALCNR 538 (552)
Q Consensus 503 ~~~~~~~~~v~~l~~~~~-~l~s~s~Dg~v~iw~~~~ 538 (552)
+ ...|.++.|..+ .+++|+.|.+|+|+.-..
T Consensus 388 h-----~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 388 H-----NDKVLSVDWNEGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred C-----CceEEEEeccCCceEEeccCcceEEEecccc
Confidence 2 778999999965 799999999999998663
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=250.03 Aligned_cols=278 Identities=21% Similarity=0.319 Sum_probs=228.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCce
Q 008820 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWR 341 (552)
Q Consensus 262 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 341 (552)
.-+|+|+|.|.+||+|...+|.+..+++...+.|+.+...|+.. .|++++ ...||+||+++.... ++..+..+..
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~-~LAaa~-~qhvRlyD~~S~np~-Pv~t~e~h~k-- 84 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKK-DLAAAG-NQHVRLYDLNSNNPN-PVATFEGHTK-- 84 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcc-hhhhcc-CCeeEEEEccCCCCC-ceeEEeccCC--
Confidence 34799999999999999999999999998889999999999766 444443 578999999987654 6666666543
Q ss_pred eeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCC--EEEEEeCCCcEEEEECCCCceeEEEe
Q 008820 342 YSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNG--VLYSGSRDGTIRLWSLSDHSLLTVLE 419 (552)
Q Consensus 342 ~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~ 419 (552)
......|..+|+.+++|++||+++|||++...+.+.+. |..+|+++..+++ .|++|..+|.|++||+.+..+...+.
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI 163 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence 12345788899999999999999999999977776666 7799999999944 99999999999999999988877776
Q ss_pred cCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--------cceeeeecccceEEEEE--ecCCEEEEEeCCCeEEEE
Q 008820 420 EDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--------KFMKSMQTHKGSVFAVF--LEGKWLFTGGWDKTVSVQ 489 (552)
Q Consensus 420 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--------~~~~~~~~h~~~v~~v~--~~~~~l~sgs~dg~i~iw 489 (552)
......+.+ +.+.|||.+++.+...|+.++|++- .++..++.|.+.+..+. +|+++|+++|.|.+++||
T Consensus 164 Pe~~~~i~s-l~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 164 PEDDTSIQS-LTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred CCCCcceee-EEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEE
Confidence 554444444 7999999999999999999999943 35667889999887754 599999999999999999
Q ss_pred ecCCCeeeeeeccCCCcccCcceEEEEEe-C-CeEEEEeCCCeEEEEEecCCcceeEEEecccc
Q 008820 490 ELAGDEFEEDVIPTGAIPCGSVITALLYW-Q-GKLFVGCADRTVKIALCNRQIPEIFSLLLHIN 551 (552)
Q Consensus 490 d~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~-~~l~s~s~Dg~v~iw~~~~~~~~~~~~~gh~~ 551 (552)
+.++- +.......++ ...+...+|+ + .+|++|+.|+.+++|+++ ..+++....||..
T Consensus 243 n~~~~-~kle~~l~gh---~rWvWdc~FS~dg~YlvTassd~~~rlW~~~-~~k~v~qy~gh~K 301 (311)
T KOG0315|consen 243 NTDDF-FKLELVLTGH---QRWVWDCAFSADGEYLVTASSDHTARLWDLS-AGKEVRQYQGHHK 301 (311)
T ss_pred ecCCc-eeeEEEeecC---CceEEeeeeccCccEEEecCCCCceeecccc-cCceeeecCCccc
Confidence 99887 3333333222 5679999999 4 459999999999999998 6778899999863
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=248.35 Aligned_cols=286 Identities=23% Similarity=0.359 Sum_probs=227.2
Q ss_pred EEEEEeecCccceEEEEEc---CCEEEEEeCCCcEEEEeCC-----CCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCC
Q 008820 243 VKFKDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLK-----DFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSG 314 (552)
Q Consensus 243 ~~~~~l~~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~-----~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d 314 (552)
+..-++++|.+.|+.++.. .+.+++++.|.++.+|++. .|.+++.++||+..|..++.+++++ ++++++.|
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~-~alS~swD 84 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN-FALSASWD 84 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc-eEEecccc
Confidence 3445689999999999998 7899999999999999875 4678999999999999999999665 78999999
Q ss_pred CcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCC--CCCeEEEEEeC
Q 008820 315 GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGH--KSAVSTLAVCN 392 (552)
Q Consensus 315 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~~~ 392 (552)
+++++||+.+++... .+.+|... .-..+++++++.+++|+.|.+|++||.. +.+..++..+ .+.|+|+.|++
T Consensus 85 ~~lrlWDl~~g~~t~---~f~GH~~d--Vlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP 158 (315)
T KOG0279|consen 85 GTLRLWDLATGESTR---RFVGHTKD--VLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSP 158 (315)
T ss_pred ceEEEEEecCCcEEE---EEEecCCc--eEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcC
Confidence 999999999874433 33343321 1234788899999999999999999985 4555555433 78999999993
Q ss_pred C----EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcceee-eecccceE
Q 008820 393 G----VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKS-MQTHKGSV 467 (552)
Q Consensus 393 ~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~-~~~h~~~v 467 (552)
+ .|++++.|+++++||+++.+....+.+| .+.+.. +.+||||.++++|+.||.+.+||+++.... ...|...|
T Consensus 159 ~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh-~~~v~t-~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v 236 (315)
T KOG0279|consen 159 NESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH-SGYVNT-VTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIV 236 (315)
T ss_pred CCCCcEEEEccCCceEEEEccCCcchhhccccc-cccEEE-EEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeE
Confidence 3 8999999999999999999988888876 345555 699999999999999999999998754432 34578899
Q ss_pred EEEEe-cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCc----ccCcceEEEEEe-CC-eEEEEeCCCeEEEEEec
Q 008820 468 FAVFL-EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAI----PCGSVITALLYW-QG-KLFVGCADRTVKIALCN 537 (552)
Q Consensus 468 ~~v~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~v~~l~~~-~~-~l~s~s~Dg~v~iw~~~ 537 (552)
.+++| -.++.++...+..|+|||+.+..+...+...... .....+.+++|+ ++ .|++|-.|+.|++|.+.
T Consensus 237 ~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 237 NSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 99988 3444455555677999999988766554433221 123457788999 34 49999999999999975
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=268.55 Aligned_cols=255 Identities=25% Similarity=0.434 Sum_probs=225.0
Q ss_pred CcceEEEeeCCCeEEEEE---------eecCccceEEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEE
Q 008820 230 GVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVY 300 (552)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~ 300 (552)
++..++++..+.++++|+ |.||++.|.|+.|..+.+++||.|.+|+|||+++++++.++-+|.+.|..+.|
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf 285 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRF 285 (499)
T ss_pred cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEE
Confidence 456788999999999998 67999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecC
Q 008820 301 VDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSG 380 (552)
Q Consensus 301 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~ 380 (552)
+. .++++++.|.++.+||+..+........+.++ ...+..+..+.+++++++.|.+|++|++.+++.++++.+
T Consensus 286 ~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGH----rAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~g 358 (499)
T KOG0281|consen 286 SN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGH----RAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNG 358 (499)
T ss_pred eC---CEEEEecCCceeEEEeccCchHHHHHHHHhhh----hhheeeeccccceEEEecCCceEEEEeccceeeehhhhc
Confidence 53 48899999999999999987755544555443 345667788899999999999999999999999999999
Q ss_pred CCCCeEEEEEeCCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc-----
Q 008820 381 HKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK----- 455 (552)
Q Consensus 381 h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~----- 455 (552)
|...|-|+.+.+.++++|+.|.+|++||+..|.++..+++|.. .+. ++-.|.+.+++|..||+|++||+..
T Consensus 359 HkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe-LvR---ciRFd~krIVSGaYDGkikvWdl~aaldpr 434 (499)
T KOG0281|consen 359 HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVR---CIRFDNKRIVSGAYDGKIKVWDLQAALDPR 434 (499)
T ss_pred ccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHH-hhh---heeecCceeeeccccceEEEEecccccCCc
Confidence 9999999999999999999999999999999999999988743 333 3344678899999999999999542
Q ss_pred ------ceeeeecccceEEEEEecCCEEEEEeCCCeEEEEecCCCe
Q 008820 456 ------FMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDE 495 (552)
Q Consensus 456 ------~~~~~~~h~~~v~~v~~~~~~l~sgs~dg~i~iwd~~~~~ 495 (552)
++..+..|++.|..+.||...+++++.|.+|-|||+.++.
T Consensus 435 a~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 435 APASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred ccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCC
Confidence 4556677999999999999999999999999999997653
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=243.44 Aligned_cols=265 Identities=18% Similarity=0.297 Sum_probs=225.6
Q ss_pred CccccceeeecCcceEEEeeCCCeEEEEEe---------ecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCC-----
Q 008820 219 GADIDQARAAGGVKDLVNGLSKGNVKFKDL---------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF----- 282 (552)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~----- 282 (552)
...+....++.+.+++++++.+|.+.+|+. .--..+|..++|+ ++++|+|+.|+...||++.+.
T Consensus 55 ~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~ 134 (343)
T KOG0286|consen 55 LNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGN 134 (343)
T ss_pred ccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccccccc
Confidence 345788889999999999999999999983 3346789999999 999999999999999999865
Q ss_pred -eEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEee-CCCEEEEeeC
Q 008820 283 -SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSG 360 (552)
Q Consensus 283 -~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sgs~ 360 (552)
+..+.+.+|.+.+.++.|.+++ .+++++.|.+..+||+++++.... +.+|... . -..+++| +++.+++|+.
T Consensus 135 ~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~---f~GH~gD-V-~slsl~p~~~ntFvSg~c 207 (343)
T KOG0286|consen 135 VRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQV---FHGHTGD-V-MSLSLSPSDGNTFVSGGC 207 (343)
T ss_pred ceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEE---ecCCccc-E-EEEecCCCCCCeEEeccc
Confidence 4557789999999999998743 579999999999999998754444 4444332 1 1246677 7889999999
Q ss_pred CCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCE
Q 008820 361 DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHT 438 (552)
Q Consensus 361 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 438 (552)
|+..++||++.+.++++|.+|...|+++.|. ++ -+++|+.|+++|+||+|..+.+..+...........++||..|++
T Consensus 208 D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRl 287 (343)
T KOG0286|consen 208 DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRL 287 (343)
T ss_pred ccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccE
Confidence 9999999999999999999999999999999 33 899999999999999999999988876543333334799999999
Q ss_pred EEEEECCCcEEEEeC--CcceeeeecccceEEEEE--ecCCEEEEEeCCCeEEEEe
Q 008820 439 LVVSHESGSIKVWRN--DKFMKSMQTHKGSVFAVF--LEGKWLFTGGWDKTVSVQE 490 (552)
Q Consensus 439 l~~g~~dg~i~iwd~--~~~~~~~~~h~~~v~~v~--~~~~~l~sgs~dg~i~iwd 490 (552)
|++|..|.++.+||. ++.+..+.+|.+.|.++. +||..+++||+|.+++||.
T Consensus 288 Lfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 288 LFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999994 456778899999999986 5999999999999999994
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=254.53 Aligned_cols=280 Identities=23% Similarity=0.330 Sum_probs=236.6
Q ss_pred EEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q 008820 245 FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (552)
Q Consensus 245 ~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 322 (552)
...+.||..+|+.+-|+ -..+++++.|++|++||..++++...+++|.+.|.+++|...+ .++++++.|-.+++||.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASG-KYLATCSSDLSAKLWDF 179 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCc-cEEEecCCccchhheeH
Confidence 45578999999999999 5678888899999999999999999999999999999998865 58899999999999998
Q ss_pred CCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeC
Q 008820 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSR 400 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~ 400 (552)
++. ...++...++. +.....++-|.|+++++++.|.+|+.|++.++-++.++.+|...|..+..+ |+ .+++++.
T Consensus 180 ~~~--~~c~ks~~gh~--h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 180 DTF--FRCIKSLIGHE--HGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred HHH--HHHHHHhcCcc--cceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence 853 23334333333 344456788889999999999999999999999999999999999999999 55 8899999
Q ss_pred CCcEEEEECCCCceeEEEecCCCCceEEEEEEcC---------------CCCEEEEEECCCcEEEEeC--Ccceeeeecc
Q 008820 401 DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA---------------VQHTLVVSHESGSIKVWRN--DKFMKSMQTH 463 (552)
Q Consensus 401 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~---------------~~~~l~~g~~dg~i~iwd~--~~~~~~~~~h 463 (552)
|.++++|-+.++++...++.|.. .+ -+++|.| .+.++.+++.|++|++||+ +.++.++.+|
T Consensus 256 dqtl~vW~~~t~~~k~~lR~hEh-~v-Eci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh 333 (406)
T KOG0295|consen 256 DQTLRVWVVATKQCKAELREHEH-PV-ECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH 333 (406)
T ss_pred CceEEEEEeccchhhhhhhcccc-ce-EEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc
Confidence 99999999999987777776532 22 2244433 1358999999999999995 5688899999
Q ss_pred cceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEEeCCCeEEEEEe
Q 008820 464 KGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCADRTVKIALC 536 (552)
Q Consensus 464 ~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~Dg~v~iw~~ 536 (552)
.+.|..+++ .|+||+++.+|+++++||+++.++......+ ...|++++|+.+ ++++|+-|.++++|..
T Consensus 334 dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah-----~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 334 DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH-----EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC-----cceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999988 5999999999999999999999888776643 567999999953 5999999999999974
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=260.95 Aligned_cols=283 Identities=23% Similarity=0.283 Sum_probs=235.0
Q ss_pred CccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCC
Q 008820 251 HRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328 (552)
Q Consensus 251 H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 328 (552)
-+.+|..+.|. |+.|++|+..|.+.+|+..+......++.|..+|.++.|++++. .+++|+.+|.|++|+....
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~-wmiSgD~gG~iKyWqpnmn--- 170 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGT-WMISGDKGGMIKYWQPNMN--- 170 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCC-EEEEcCCCceEEecccchh---
Confidence 34689999999 89999999999999999866555555678999999999999665 7799999999999987632
Q ss_pred ccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEE
Q 008820 329 EPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRL 406 (552)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~i 406 (552)
.++....++...+ ...+|+|+...|++++.||+|+|||....+....+.+|.-.|.|++|+ .+++++||.|..|++
T Consensus 171 -nVk~~~ahh~eaI-RdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKl 248 (464)
T KOG0284|consen 171 -NVKIIQAHHAEAI-RDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKL 248 (464)
T ss_pred -hhHHhhHhhhhhh-heeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEe
Confidence 2333333332222 245788888899999999999999999999988999999999999999 459999999999999
Q ss_pred EECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEe---cCCEEEEEe
Q 008820 407 WSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL---EGKWLFTGG 481 (552)
Q Consensus 407 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~---~~~~l~sgs 481 (552)
||.+++.++.++..|. ..+.. +.|++++++|++++.|..++++|++ +.+..+++|+..++++.| ....|.+|+
T Consensus 249 WDprSg~cl~tlh~HK-ntVl~-~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg 326 (464)
T KOG0284|consen 249 WDPRSGSCLATLHGHK-NTVLA-VKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGG 326 (464)
T ss_pred ecCCCcchhhhhhhcc-ceEEE-EEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeecc
Confidence 9999999999998774 34444 6999999999999999999999988 467788999999999976 889999999
Q ss_pred CCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-Ce-EEEEeCCCeEEEEEecCCcceeEE
Q 008820 482 WDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-GK-LFVGCADRTVKIALCNRQIPEIFS 545 (552)
Q Consensus 482 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~-l~s~s~Dg~v~iw~~~~~~~~~~~ 545 (552)
.||.|..|.+...+...... ..+...|.+++|+| +. |++|+.|.++++|.-++++.....
T Consensus 327 ~Dgsvvh~~v~~~~p~~~i~----~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~d~~~~ 388 (464)
T KOG0284|consen 327 SDGSVVHWVVGLEEPLGEIP----PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPGDKNAD 388 (464)
T ss_pred CCCceEEEeccccccccCCC----cccccceeeeeccccceeEeecCCCcceeeeccCCCCCcccc
Confidence 99999999998443333222 23478899999997 44 889999999999998876655443
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=254.85 Aligned_cols=299 Identities=18% Similarity=0.247 Sum_probs=244.3
Q ss_pred ccceeeecCcc-eEEEeeCCCeEEEEEeec-------------------C----ccceEEEEEc--CCEEEEEeCCCcEE
Q 008820 222 IDQARAAGGVK-DLVNGLSKGNVKFKDLQG-------------------H----RDCVTGLAVG--GGFLFSSSFDKSIH 275 (552)
Q Consensus 222 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~-------------------H----~~~V~~l~~s--~~~l~s~s~dg~I~ 275 (552)
+......+... .++++..+...++|++.. + ...|++++|+ |..||+|+.||.++
T Consensus 181 V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~r 260 (524)
T KOG0273|consen 181 VFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEAR 260 (524)
T ss_pred eEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEE
Confidence 34444444444 566677777777777653 2 2579999999 99999999999999
Q ss_pred EEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeC-CCE
Q 008820 276 VWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTS-GRY 354 (552)
Q Consensus 276 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 354 (552)
||+. +|..+.++..|.++|.++.|+..+. ++++++.|+++.+||..++.....+..... +...+.+. ...
T Consensus 261 iw~~-~G~l~~tl~~HkgPI~slKWnk~G~-yilS~~vD~ttilwd~~~g~~~q~f~~~s~-------~~lDVdW~~~~~ 331 (524)
T KOG0273|consen 261 IWNK-DGNLISTLGQHKGPIFSLKWNKKGT-YILSGGVDGTTILWDAHTGTVKQQFEFHSA-------PALDVDWQSNDE 331 (524)
T ss_pred EEec-CchhhhhhhccCCceEEEEEcCCCC-EEEeccCCccEEEEeccCceEEEeeeeccC-------CccceEEecCce
Confidence 9994 6788899999999999999988655 789999999999999976654433332221 11233343 348
Q ss_pred EEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEE
Q 008820 355 LYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSL 432 (552)
Q Consensus 355 l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 432 (552)
+++++.|+.|+++.+....++.++.+|.++|.++.|+ +.+|++++.|++++||+.......+.+..|.+. +.+ +.|
T Consensus 332 F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hske-i~t-~~w 409 (524)
T KOG0273|consen 332 FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKE-IYT-IKW 409 (524)
T ss_pred EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccc-eee-Eee
Confidence 9999999999999999999999999999999999999 559999999999999999988888888877543 344 477
Q ss_pred cCCC---------CEEEEEECCCcEEEEeC--CcceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeee
Q 008820 433 TAVQ---------HTLVVSHESGSIKVWRN--DKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEED 499 (552)
Q Consensus 433 s~~~---------~~l~~g~~dg~i~iwd~--~~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~ 499 (552)
+|.| ..+++++.|++|++||. +.++..+..|..+|++++| +|+++++|+.||.|.+|+..++++...
T Consensus 410 sp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s 489 (524)
T KOG0273|consen 410 SPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS 489 (524)
T ss_pred cCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe
Confidence 7754 57899999999999995 4678899999999999988 799999999999999999999988776
Q ss_pred eccCCCcccCcceEEEEEe--CCeEEEEeCCCeEEEEEec
Q 008820 500 VIPTGAIPCGSVITALLYW--QGKLFVGCADRTVKIALCN 537 (552)
Q Consensus 500 ~~~~~~~~~~~~v~~l~~~--~~~l~s~s~Dg~v~iw~~~ 537 (552)
... ...|..++|+ ++++..+-.||.+++-|+.
T Consensus 490 ~~~------~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 490 YQG------TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ecC------CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 554 5559999999 5678888899999999875
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-32 Score=232.54 Aligned_cols=288 Identities=20% Similarity=0.302 Sum_probs=228.6
Q ss_pred eEEEEEeecCccceEEEEEc-C--CEEEEEeCCCcEEEEeCCC---CeEEEEE-eCCCCCeEEEEEecCCCCEEEEEcCC
Q 008820 242 NVKFKDLQGHRDCVTGLAVG-G--GFLFSSSFDKSIHVWSLKD---FSHVHTF-KGHDHKVMAVVYVDEDQPLCISGDSG 314 (552)
Q Consensus 242 ~~~~~~l~~H~~~V~~l~~s-~--~~l~s~s~dg~I~iwd~~~---~~~~~~~-~~h~~~v~~v~~~~~~~~~l~s~~~d 314 (552)
-+.+..+++|.+.|..++|+ + ..||||+.|+.||+|+... ..+...+ .+|+..|.+++|+|.++ +|+++|.|
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD 82 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFD 82 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeecc
Confidence 34577899999999999999 4 4899999999999999885 3444444 36999999999999776 88999999
Q ss_pred CcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCC---ceeEEecCCCCCeEEEEEe
Q 008820 315 GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDG---TLSCTMSGHKSAVSTLAVC 391 (552)
Q Consensus 315 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~ 391 (552)
.++.||.-..+ .-..+..+.+|.+. ....+++.+|++|++++.|++|-+|.+..+ ++...++.|...|..+.|+
T Consensus 83 ~t~~Iw~k~~~-efecv~~lEGHEnE--VK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 83 ATVVIWKKEDG-EFECVATLEGHENE--VKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH 159 (312)
T ss_pred ceEEEeecCCC-ceeEEeeeeccccc--eeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence 99999975532 23345555555542 234588899999999999999999998743 5778899999999999999
Q ss_pred C--CEEEEEeCCCcEEEEECCC---CceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcceeeeecccce
Q 008820 392 N--GVLYSGSRDGTIRLWSLSD---HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGS 466 (552)
Q Consensus 392 ~--~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~h~~~ 466 (552)
+ ++|+++|.|++|++|+-.. -.+++++..++. .+.+ ++|++.|..|++++.|++++||..... .-..|+..
T Consensus 160 Pt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TVW~-~~F~~~G~rl~s~sdD~tv~Iw~~~~~--~~~~~sr~ 235 (312)
T KOG0645|consen 160 PTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TVWS-LAFDNIGSRLVSCSDDGTVSIWRLYTD--LSGMHSRA 235 (312)
T ss_pred CCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eEEE-EEecCCCceEEEecCCcceEeeeeccC--cchhcccc
Confidence 5 6999999999999998763 347888887743 4555 699999999999999999999985421 12347889
Q ss_pred EEEEEecCCEEEEEeCCCeEEEEecCCCeeee--eeccCCCcccCcceEEEEEeC---CeEEEEeCCCeEEEEEec
Q 008820 467 VFAVFLEGKWLFTGGWDKTVSVQELAGDEFEE--DVIPTGAIPCGSVITALLYWQ---GKLFVGCADRTVKIALCN 537 (552)
Q Consensus 467 v~~v~~~~~~l~sgs~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~l~~~~---~~l~s~s~Dg~v~iw~~~ 537 (552)
++.+.|+...|++++.|+.|++|.-....... .........|...|+++.|.| ++|++|+.||.|++|.+.
T Consensus 236 ~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 236 LYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 99999998899999999999999776431111 111112223466899999997 569999999999999975
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=232.02 Aligned_cols=281 Identities=16% Similarity=0.252 Sum_probs=232.4
Q ss_pred CeEEEEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEE
Q 008820 241 GNVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIF 318 (552)
Q Consensus 241 ~~~~~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~ 318 (552)
+++++..+..|+++|+++.|+ |++.++++.|.+|++|+...+.+++++.+|...|..++.+.++. -+++|+.|..+.
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dns-kf~s~GgDk~v~ 84 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNS-KFASCGGDKAVQ 84 (307)
T ss_pred cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccccc-ccccCCCCceEE
Confidence 455678899999999999999 99999999999999999999999999999999999999887655 569999999999
Q ss_pred EEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCC--CceeEEecCCCCCeEEEEEeCCEEE
Q 008820 319 VWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLD--GTLSCTMSGHKSAVSTLAVCNGVLY 396 (552)
Q Consensus 319 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~~~~~l~ 396 (552)
+||+++++....++.+.... ....|+.+...+++|+.|.++++||.++ .++++.+......|.++...+..++
T Consensus 85 vwDV~TGkv~Rr~rgH~aqV-----NtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIv 159 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQV-----NTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIV 159 (307)
T ss_pred EEEcccCeeeeeccccccee-----eEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEE
Confidence 99999987666555433221 2235556667999999999999999975 4788889888899999999999999
Q ss_pred EEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEe--CCcceeeeecccceEEEEE--e
Q 008820 397 SGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR--NDKFMKSMQTHKGSVFAVF--L 472 (552)
Q Consensus 397 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd--~~~~~~~~~~h~~~v~~v~--~ 472 (552)
+|+.||++|.||++.|+....+.++ ++.+ ++|+++++..++++-|+++++.| .++.++.+++|.+.-..+. +
T Consensus 160 aGS~DGtvRtydiR~G~l~sDy~g~---pit~-vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l 235 (307)
T KOG0316|consen 160 AGSVDGTVRTYDIRKGTLSSDYFGH---PITS-VSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCL 235 (307)
T ss_pred eeccCCcEEEEEeecceeehhhcCC---ccee-EEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeee
Confidence 9999999999999999887766543 3444 69999999999999999999998 6688999999988665543 2
Q ss_pred --cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCe--EEEEeCCCeEEEEEe
Q 008820 473 --EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK--LFVGCADRTVKIALC 536 (552)
Q Consensus 473 --~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~s~s~Dg~v~iw~~ 536 (552)
....+++||+||.|++||+.+......+.... ...|.+++++|.. ++++... .+..|.-
T Consensus 236 ~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~----~v~v~dl~~hp~~~~f~~A~~~-~~~~~~~ 298 (307)
T KOG0316|consen 236 NQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVS----TVIVTDLSCHPTMDDFITATGH-GDLFWYQ 298 (307)
T ss_pred cccceeEEeccCCceEEEEEeccceeeeeeccCC----ceeEEeeecccCccceeEecCC-ceeceee
Confidence 67799999999999999999887766655432 3348899999854 6666544 4555643
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=265.91 Aligned_cols=281 Identities=16% Similarity=0.230 Sum_probs=236.3
Q ss_pred eEEEEEeecCccceEEEEEc---CCEEEEEeCCCcEEEEeCCC-CeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcE
Q 008820 242 NVKFKDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKD-FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGI 317 (552)
Q Consensus 242 ~~~~~~l~~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i 317 (552)
...++++.||...|+++.|. +.+|++++.|+.|+||++-. +++++++.+|..+|.+++|++++. .+++++.|+.+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~-~fLS~sfD~~l 282 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT-SFLSASFDRFL 282 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC-eeeeeecceee
Confidence 34567899999999999998 89999999999999999865 899999999999999999998766 56899999999
Q ss_pred EEEeCCCCCCCccccccccCCCceeeeEEEEeeCC-CEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCE
Q 008820 318 FVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSG-RYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGV 394 (552)
Q Consensus 318 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~ 394 (552)
++||++++.....+..- ....+..+.|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|- +..
T Consensus 283 KlwDtETG~~~~~f~~~------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLD------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRR 356 (503)
T ss_pred eeeccccceEEEEEecC------CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCce
Confidence 99999998765544432 223456788887 699999999999999999999999999999999999998 349
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC-----cceeeeecccceEEE
Q 008820 395 LYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND-----KFMKSMQTHKGSVFA 469 (552)
Q Consensus 395 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~-----~~~~~~~~h~~~v~~ 469 (552)
+++.+.|++++||+.+.+-.+..+.....-... ++..+|++.++++-+.|+.|.++.+. +..+.+++|..+=.+
T Consensus 357 FissSDdks~riWe~~~~v~ik~i~~~~~hsmP-~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 357 FISSSDDKSVRIWENRIPVPIKNIADPEMHTMP-CLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred EeeeccCccEEEEEcCCCccchhhcchhhccCc-ceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 999999999999999988776655444322233 36899999999999999999999854 345677888654333
Q ss_pred ----EEecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC---CeEEEEeCCCeEEEEE
Q 008820 470 ----VFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ---GKLFVGCADRTVKIAL 535 (552)
Q Consensus 470 ----v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~s~s~Dg~v~iw~ 535 (552)
+++||.+|++|+.||.+.+||.++.++...+..+ ..+|..+.|+| ..+++++.||.|++|+
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah-----~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH-----DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC-----CcceEEEEecCCCcceeEecccCceeEecC
Confidence 3459999999999999999999988776665553 67899999996 4699999999999996
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-32 Score=233.48 Aligned_cols=253 Identities=21% Similarity=0.315 Sum_probs=207.6
Q ss_pred eEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCC--CCccccccccCCCceeeeEEEEeeCCCEEEEeeC
Q 008820 283 SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPL--GHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG 360 (552)
Q Consensus 283 ~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~ 360 (552)
....++++|++.|+.++..+.+..++++++.|.++.+|++.... ...+.+.+.+|. +...-..++++|++.++++.
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHs--H~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHS--HFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccc--eEecceEEccCCceEEeccc
Confidence 44567899999999999999888999999999999999997653 233455666644 33344578899999999999
Q ss_pred CCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeCCCcEEEEECCCCceeEEEecCC-CCceEEEEEEcCC--
Q 008820 361 DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDS-SGAVSSVLSLTAV-- 435 (552)
Q Consensus 361 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~s~~-- 435 (552)
|+++++||+.+++..+.|.+|...|.+++|+ ++ .+++|+.|.+|++||... .+..++.... .+.+.+ +.|+|+
T Consensus 84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVsc-vrfsP~~~ 161 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSC-VRFSPNES 161 (315)
T ss_pred cceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEE-EEEcCCCC
Confidence 9999999999999999999999999999999 44 999999999999999864 4555555443 445554 799998
Q ss_pred CCEEEEEECCCcEEEEeCCc--ceeeeecccceEEEEE--ecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcc
Q 008820 436 QHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAVF--LEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSV 511 (552)
Q Consensus 436 ~~~l~~g~~dg~i~iwd~~~--~~~~~~~h~~~v~~v~--~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 511 (552)
..+|++++.|++|++||+++ ....+.+|.+.++.+. +||..+++|+.||.+.+||++.++....+.+ ...
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a------~~~ 235 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA------FDI 235 (315)
T ss_pred CcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC------CCe
Confidence 67999999999999999875 4667889999998776 4999999999999999999998877665544 667
Q ss_pred eEEEEEeCCe-EEEEeCCCeEEEEEecCCcceeEEE
Q 008820 512 ITALLYWQGK-LFVGCADRTVKIALCNRQIPEIFSL 546 (552)
Q Consensus 512 v~~l~~~~~~-l~s~s~Dg~v~iw~~~~~~~~~~~~ 546 (552)
|.+++|+|++ .+++..+..|+|||++ +...++++
T Consensus 236 v~sl~fspnrywL~~at~~sIkIwdl~-~~~~v~~l 270 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAATATSIKIWDLE-SKAVVEEL 270 (315)
T ss_pred EeeEEecCCceeEeeccCCceEEEecc-chhhhhhc
Confidence 9999999987 4456667779999998 34344433
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-32 Score=236.65 Aligned_cols=278 Identities=19% Similarity=0.288 Sum_probs=228.6
Q ss_pred eEEEEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeC-CCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEE
Q 008820 242 NVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSL-KDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIF 318 (552)
Q Consensus 242 ~~~~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~-~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~ 318 (552)
...+..+.||++.|..+.|+ |.+|+||+.|..|.+|++ ...+....+++|.++|..+.|.+++. .+++++.|.+++
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s-~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGS-HILSCGTDKTVR 115 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCC-EEEEecCCceEE
Confidence 34566789999999999999 999999999999999994 45567788999999999999998665 779999999999
Q ss_pred EEeCCCCCCCccccccccCCCceeeeEEEEeeC---CCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CC
Q 008820 319 VWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTS---GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NG 393 (552)
Q Consensus 319 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~ 393 (552)
.||+++++.....+... ..+.++.|. ...+.+|+.||++++||+++..+++++. .+.+++++.|. .+
T Consensus 116 ~wD~~tG~~~rk~k~h~-------~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~ 187 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHT-------SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSD 187 (338)
T ss_pred EEecccceeeehhcccc-------ceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEeccccc
Confidence 99999887665554422 223344443 3388999999999999999999988876 46679999999 44
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC------cceeeeecccc--
Q 008820 394 VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND------KFMKSMQTHKG-- 465 (552)
Q Consensus 394 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~------~~~~~~~~h~~-- 465 (552)
.+.+|+-|+.|++||++.+...+++.++. ..++. ++.+++|.++.+-+-|.++++||.+ .++..+.+|.-
T Consensus 188 qv~sggIdn~ikvWd~r~~d~~~~lsGh~-DtIt~-lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf 265 (338)
T KOG0265|consen 188 QVISGGIDNDIKVWDLRKNDGLYTLSGHA-DTITG-LSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF 265 (338)
T ss_pred ceeeccccCceeeeccccCcceEEeeccc-Cceee-EEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhh
Confidence 99999999999999999999999999884 55555 6999999999999999999999965 34677776543
Q ss_pred eE--EEE--EecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEEeCCCeEEEEE
Q 008820 466 SV--FAV--FLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCADRTVKIAL 535 (552)
Q Consensus 466 ~v--~~v--~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~Dg~v~iw~ 535 (552)
.. ..+ ++++..+.+|+.|..+++||.....+...+..+ ...|++++|+|. .|.+++.|.+|++=.
T Consensus 266 eknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh-----~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 266 EKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH-----YGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred hhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc-----ceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 22 233 349999999999999999999887666554443 677999999975 489999999998743
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-31 Score=255.16 Aligned_cols=312 Identities=20% Similarity=0.296 Sum_probs=257.0
Q ss_pred CCCCccccceeeecCcceEEEeeCCCeEEEEEee------------------------c-------------------Cc
Q 008820 216 NSDGADIDQARAAGGVKDLVNGLSKGNVKFKDLQ------------------------G-------------------HR 252 (552)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------------------------~-------------------H~ 252 (552)
+.+...+....+..+...+++-..+|.+.+|++. + ..
T Consensus 186 ~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~ 265 (893)
T KOG0291|consen 186 NGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNS 265 (893)
T ss_pred cCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccc
Confidence 4444567777777888888888888888888765 1 12
Q ss_pred cceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcc
Q 008820 253 DCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP 330 (552)
Q Consensus 253 ~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 330 (552)
..|++.+|+ .+.|++|-..|...+|++....+++.+.-...+|..++|+..|..+.+.|+.-|.+.||++.+....-.
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK 345 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK 345 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee
Confidence 568889999 678999999999999999999999999988899999999988887766666779999999986543332
Q ss_pred ccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEE
Q 008820 331 LKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWS 408 (552)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd 408 (552)
.+.+ .......+.+|||+++++|+.||.|++||..++-|..+|..|++.|+.+.|+ ++.+++.|.||+|+.||
T Consensus 346 QQgH-----~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 346 QQGH-----SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred cccc-----ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence 2221 1233456889999999999999999999999999999999999999999999 66999999999999999
Q ss_pred CCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCC-cEEEEe--CCcceeeeecccceEEEEEe--cCCEEEEEeCC
Q 008820 409 LSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG-SIKVWR--NDKFMKSMQTHKGSVFAVFL--EGKWLFTGGWD 483 (552)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg-~i~iwd--~~~~~~~~~~h~~~v~~v~~--~~~~l~sgs~d 483 (552)
+...+..+++..+.+.... +++..|.|..+++|+.|. .|++|+ .++.+..+.||.++|.+++| ++..|+++|+|
T Consensus 421 lkRYrNfRTft~P~p~Qfs-cvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD 499 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEPIQFS-CVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD 499 (893)
T ss_pred ecccceeeeecCCCceeee-EEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc
Confidence 9999999999987654444 479999999999998875 699998 56788999999999998665 89999999999
Q ss_pred CeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEEeCCCeEEEEEecC
Q 008820 484 KTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGCADRTVKIALCNR 538 (552)
Q Consensus 484 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~Dg~v~iw~~~~ 538 (552)
.+|++||+-+..-... .+.....+..++|+| ..+++++.||.|.+||.+.
T Consensus 500 kTVRiW~if~s~~~vE-----tl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 500 KTVRIWDIFSSSGTVE-----TLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred ceEEEEEeeccCceee-----eEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence 9999999965422211 122256689999995 3499999999999999983
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=244.53 Aligned_cols=309 Identities=18% Similarity=0.250 Sum_probs=242.1
Q ss_pred ceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEe---CCCCCeEE
Q 008820 232 KDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFK---GHDHKVMA 297 (552)
Q Consensus 232 ~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~---~h~~~v~~ 297 (552)
-+++++..|..+.+++ +..|..-|+|+.|+ |.+++|++.||+|.+||-.+++.+..+. +|.+.|.+
T Consensus 161 fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfa 240 (603)
T KOG0318|consen 161 FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFA 240 (603)
T ss_pred eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEE
Confidence 4455666666555443 67899999999999 9999999999999999999999999998 89999999
Q ss_pred EEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEE
Q 008820 298 VVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT 377 (552)
Q Consensus 298 v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~ 377 (552)
++|+|++. .+++++.|.+++|||+.+.+.. +++..........+ ..-+.+..|++.+.+|+|.+++.....+...
T Consensus 241 lsWsPDs~-~~~T~SaDkt~KIWdVs~~slv---~t~~~~~~v~dqqv-G~lWqkd~lItVSl~G~in~ln~~d~~~~~~ 315 (603)
T KOG0318|consen 241 LSWSPDST-QFLTVSADKTIKIWDVSTNSLV---STWPMGSTVEDQQV-GCLWQKDHLITVSLSGTINYLNPSDPSVLKV 315 (603)
T ss_pred EEECCCCc-eEEEecCCceEEEEEeeccceE---EEeecCCchhceEE-EEEEeCCeEEEEEcCcEEEEecccCCChhhe
Confidence 99999776 6699999999999999976433 33333222112222 3334477899999999999999999999999
Q ss_pred ecCCCCCeEEEEEe-C-CEEEEEeCCCcEEEEECCCCcee-----------EEEecCC----------------------
Q 008820 378 MSGHKSAVSTLAVC-N-GVLYSGSRDGTIRLWSLSDHSLL-----------TVLEEDS---------------------- 422 (552)
Q Consensus 378 ~~~h~~~v~~l~~~-~-~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~~~~---------------------- 422 (552)
+.+|...|+++..+ + .+|++|+.||.|.-||..++..- ..+....
T Consensus 316 i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 316 ISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNG 395 (603)
T ss_pred ecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCc
Confidence 99999999999999 3 39999999999999998754321 1110000
Q ss_pred --------------------C--------------------------CceEEEEEEcCCCCEEEEEECCCcEEEEeCCc-
Q 008820 423 --------------------S--------------------------GAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK- 455 (552)
Q Consensus 423 --------------------~--------------------------~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~- 455 (552)
. +....+++++|++..+++|+.||.|++|.+..
T Consensus 396 ~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~ 475 (603)
T KOG0318|consen 396 YTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGD 475 (603)
T ss_pred ccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCC
Confidence 0 00112367899999999999999999998543
Q ss_pred ---ceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEEeCC
Q 008820 456 ---FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCAD 528 (552)
Q Consensus 456 ---~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~D 528 (552)
....+..|.++|+++++ |+.+|++|...+.+.+||+.+.+....... -|.+.|.+++|+|+ ++++|+-|
T Consensus 476 ~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~----FHtakI~~~aWsP~n~~vATGSlD 551 (603)
T KOG0318|consen 476 ELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWA----FHTAKINCVAWSPNNKLVATGSLD 551 (603)
T ss_pred cccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceee----eeeeeEEEEEeCCCceEEEecccc
Confidence 34466789999999886 999999999999999999998766322221 13788999999974 49999999
Q ss_pred CeEEEEEecCCcceeEEEecc
Q 008820 529 RTVKIALCNRQIPEIFSLLLH 549 (552)
Q Consensus 529 g~v~iw~~~~~~~~~~~~~gh 549 (552)
.+|.||+++++...+.-...|
T Consensus 552 t~Viiysv~kP~~~i~iknAH 572 (603)
T KOG0318|consen 552 TNVIIYSVKKPAKHIIIKNAH 572 (603)
T ss_pred ceEEEEEccChhhheEecccc
Confidence 999999999777665444445
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=264.53 Aligned_cols=326 Identities=21% Similarity=0.292 Sum_probs=252.4
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc----CCEEEEEeCCCcEEEEeCCCCeE
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG----GGFLFSSSFDKSIHVWSLKDFSH 284 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s----~~~l~s~s~dg~I~iwd~~~~~~ 284 (552)
+..++..+++.+.+..++++..++.+++|+ |+||.+.|.++.|+ ...|++|+.|+++++||+.+...
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t 183 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT 183 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch
Confidence 345577788888888888999999999887 67999999999999 45689999999999999996554
Q ss_pred -EEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccc----------------------------
Q 008820 285 -VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWN---------------------------- 335 (552)
Q Consensus 285 -~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------------------------- 335 (552)
+.++..|.+.|++++|++++. .+++++.|..+.+||+...+....+..+.
T Consensus 184 cl~~~~~H~S~vtsL~~~~d~~-~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~ 262 (775)
T KOG0319|consen 184 CLHTMILHKSAVTSLAFSEDSL-ELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVV 262 (775)
T ss_pred HHHHHHhhhhheeeeeeccCCc-eEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceE
Confidence 788899999999999999754 66889999999999975311100000000
Q ss_pred ----------------------------------------------------------cCC-------------C-----
Q 008820 336 ----------------------------------------------------------EEK-------------D----- 339 (552)
Q Consensus 336 ----------------------------------------------------------~~~-------------~----- 339 (552)
+.+ .
T Consensus 263 ~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVA 342 (775)
T KOG0319|consen 263 QYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVA 342 (775)
T ss_pred EEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEE
Confidence 000 0
Q ss_pred --------------------ceeeeEEEEe--eCCCEEEEeeCCCcEEEEECCCC----ceeEEecCCCCCeEEEEEe--
Q 008820 340 --------------------WRYSGIHALT--TSGRYLYTGSGDRTIKAWSLLDG----TLSCTMSGHKSAVSTLAVC-- 391 (552)
Q Consensus 340 --------------------~~~~~~~~~~--~~~~~l~sgs~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~-- 391 (552)
.|...+.++. .+|.+|++|+.|.++++|.++++ .++....+|.+.|.+++++
T Consensus 343 TNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~ 422 (775)
T KOG0319|consen 343 TNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL 422 (775)
T ss_pred eCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeeccc
Confidence 0000011333 34568999999999999987544 3455668999999999998
Q ss_pred -CCEEEEEeCCCcEEEEECCCCcee---EEE-----ecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeee
Q 008820 392 -NGVLYSGSRDGTIRLWSLSDHSLL---TVL-----EEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSM 460 (552)
Q Consensus 392 -~~~l~s~~~dg~i~iwd~~~~~~~---~~~-----~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~ 460 (552)
..+|+++|.|+++++|++...+.. ..+ ...|...+.+ ++++|+.+++++|+.|.+.+||++.+ ...++
T Consensus 423 ~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~-Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vL 501 (775)
T KOG0319|consen 423 GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINC-VAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVL 501 (775)
T ss_pred CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccc-eEecCCCceEEecccccceeeecccCceEEEEe
Confidence 349999999999999999762211 111 1223444555 69999999999999999999999774 56789
Q ss_pred ecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEe--CCeEEEEeCCCeEEEEEe
Q 008820 461 QTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW--QGKLFVGCADRTVKIALC 536 (552)
Q Consensus 461 ~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~Dg~v~iw~~ 536 (552)
.+|+..|.++.| ..+.++|+|.|++|+||.+++..+..++..+ ...|....|- +.+|++++.||-|++|++
T Consensus 502 sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH-----~~aVlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 502 SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGH-----TSAVLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred eCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCc-----cceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 999999999998 7789999999999999999999998888764 5667777776 356999999999999999
Q ss_pred cCCcceeEEEecccc
Q 008820 537 NRQIPEIFSLLLHIN 551 (552)
Q Consensus 537 ~~~~~~~~~~~gh~~ 551 (552)
+ +...+.++..|.+
T Consensus 577 k-t~eC~~tlD~H~D 590 (775)
T KOG0319|consen 577 K-TNECEMTLDAHND 590 (775)
T ss_pred c-chhhhhhhhhccc
Confidence 8 6777888888864
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=241.07 Aligned_cols=265 Identities=22% Similarity=0.388 Sum_probs=231.0
Q ss_pred CccccceeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCC-CeEEE
Q 008820 219 GADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD-FSHVH 286 (552)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~-~~~~~ 286 (552)
...+..+.+.+....+++...+.++++|+ |+||.+.|..++|+ |+++++++.|=.+++||.++ .++++
T Consensus 108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~k 187 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIK 187 (406)
T ss_pred ccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHH
Confidence 34567777778888888888899999887 68999999999999 99999999998899999987 67888
Q ss_pred EEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEE
Q 008820 287 TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKA 366 (552)
Q Consensus 287 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~i 366 (552)
.+.+|...|.+++|.|.+ .++++++.|.+|+.|+++++.+.. .+.++.. ...+..+..||..+++++.|.+|++
T Consensus 188 s~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~---t~~~h~e--wvr~v~v~~DGti~As~s~dqtl~v 261 (406)
T KOG0295|consen 188 SLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVK---TFPGHSE--WVRMVRVNQDGTIIASCSNDQTLRV 261 (406)
T ss_pred HhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEE---eccCchH--hEEEEEecCCeeEEEecCCCceEEE
Confidence 899999999999999987 588999999999999999875444 4444443 3345677788999999999999999
Q ss_pred EECCCCceeEEecCCCCCeEEEEEe------------C-----CEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEE
Q 008820 367 WSLLDGTLSCTMSGHKSAVSTLAVC------------N-----GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSV 429 (552)
Q Consensus 367 wd~~~~~~~~~~~~h~~~v~~l~~~------------~-----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 429 (552)
|-+.++++...++.|+-+|.|++|. + .++.+++.|++|++||+.++.++.++.+|. ..+..
T Consensus 262 W~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghd-nwVr~- 339 (406)
T KOG0295|consen 262 WVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHD-NWVRG- 339 (406)
T ss_pred EEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccc-ceeee-
Confidence 9999999999999999999999984 1 289999999999999999999999999884 44444
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEec
Q 008820 430 LSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQEL 491 (552)
Q Consensus 430 ~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~ 491 (552)
++|+|.|++|+++.+|+++++||++ ++.+.+..|..-++++++ +..+++||+-|.++++|.-
T Consensus 340 ~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 340 VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 6999999999999999999999965 578889999999999998 6679999999999999964
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=257.90 Aligned_cols=283 Identities=19% Similarity=0.315 Sum_probs=232.3
Q ss_pred EEEEEeecCccceEEEEEcC---CEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEE
Q 008820 243 VKFKDLQGHRDCVTGLAVGG---GFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFV 319 (552)
Q Consensus 243 ~~~~~l~~H~~~V~~l~~s~---~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~v 319 (552)
.....+-|..+.|..++|-| ++++.++..+.+|+|+..+..+. .+.||++.|.++....++ .+|++|+.|.++++
T Consensus 314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g-~llat~sKD~svil 391 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSG-DLLATGSKDKSVIL 391 (775)
T ss_pred EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccC-cEEEEecCCceEEE
Confidence 33445778999999999984 99999999999999999887776 789999999999954444 69999999999999
Q ss_pred EeCCCCCCC-ccccccccCCCceeeeEEEEeeC-CCEEEEeeCCCcEEEEECCCCc-----ee----EEecCCCCCeEEE
Q 008820 320 WSFSFPLGH-EPLKKWNEEKDWRYSGIHALTTS-GRYLYTGSGDRTIKAWSLLDGT-----LS----CTMSGHKSAVSTL 388 (552)
Q Consensus 320 wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~l~sgs~dg~i~iwd~~~~~-----~~----~~~~~h~~~v~~l 388 (552)
|.++.+... .++....+|.. ....+ +++.. ...|+++|.|+++++|++...+ .+ .+...|...|+|+
T Consensus 392 Wr~~~~~~~~~~~a~~~gH~~-svgav-a~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~V 469 (775)
T KOG0319|consen 392 WRLNNNCSKSLCVAQANGHTN-SVGAV-AGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCV 469 (775)
T ss_pred EEecCCcchhhhhhhhccccc-cccee-eecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccce
Confidence 998544332 23333334332 22223 33333 3399999999999999997521 11 1335799999999
Q ss_pred EEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeeccc
Q 008820 389 AVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHK 464 (552)
Q Consensus 389 ~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~ 464 (552)
+++ +.+++|||.|.+.++|++.+.....++.+|..+ +.+ +.|++....+++++.|++|+||.+. .+++++.||+
T Consensus 470 aia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RG-vw~-V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~ 547 (775)
T KOG0319|consen 470 AIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRG-VWC-VSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHT 547 (775)
T ss_pred EecCCCceEEecccccceeeecccCceEEEEeeCCccc-eEE-EEeccccceeEeccCCceEEEEEeccceeeeeecCcc
Confidence 999 449999999999999999999999999998654 455 6999999999999999999999865 5899999999
Q ss_pred ceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEEeCCCeEEEEEe
Q 008820 465 GSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGCADRTVKIALC 536 (552)
Q Consensus 465 ~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~Dg~v~iw~~ 536 (552)
..|..++| +|+.|+|++.||.|++|+++++.+...+..+ ...|.+++.++ +.++||+.||.|.+|.=
T Consensus 548 ~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H-----~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 548 SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH-----NDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc-----cceeEEEeecCccceeEecCCCeEEEEeec
Confidence 99999998 9999999999999999999999888877664 77899999985 45899999999999974
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=237.12 Aligned_cols=293 Identities=18% Similarity=0.232 Sum_probs=241.6
Q ss_pred EEEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEe
Q 008820 244 KFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (552)
Q Consensus 244 ~~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 321 (552)
.+.+|..|++.|.+++.+ .++++||+.|..-.+|++.++.....+.+|.+.|+++.|+.++. +|++|+.+|.|+||+
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdgt-lLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGT-LLATGDMSGKVLVFK 134 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCce-EEEecCCCccEEEEE
Confidence 367799999999999999 89999999999999999999999999999999999999998665 889999999999999
Q ss_pred CCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEe
Q 008820 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGS 399 (552)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~ 399 (552)
..++.....+.... .-..-..++|.+..|+.|+.||.+-+|.+.++...+.+.+|+.++++=.|. +..++++.
T Consensus 135 ~stg~~~~~~~~e~-----~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEV-----EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeeccc-----CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEe
Confidence 99876555443111 111224667777899999999999999999988889999999999999998 34999999
Q ss_pred CCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeC--Ccceeeee--------cccceEEE
Q 008820 400 RDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFMKSMQ--------THKGSVFA 469 (552)
Q Consensus 400 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~--~~~~~~~~--------~h~~~v~~ 469 (552)
.||+|++||+.+++++..+......... .+.++..+..++.|+.++.+++-+. ++.+.... .+...+.+
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~~~~~-~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEGLELP-CISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred cCceEEEEecCCCceeEEecccccCcCC-ccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 9999999999999999998865433333 3688888899999999998888873 33333333 34444444
Q ss_pred EEe-----cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-CeEEEEeCCCeEEEEEecCCccee
Q 008820 470 VFL-----EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-GKLFVGCADRTVKIALCNRQIPEI 543 (552)
Q Consensus 470 v~~-----~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~s~s~Dg~v~iw~~~~~~~~~ 543 (552)
+.+ .=.+.|+|+.||+|.|||+...+++....+ ...|..+.|-+ ..|++++.||.|+.||.. ++..+
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~h------e~~V~~l~w~~t~~l~t~c~~g~v~~wDaR-tG~l~ 361 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEH------EDGVTKLKWLNTDYLLTACANGKVRQWDAR-TGQLK 361 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccchhheeccC------CCceEEEEEcCcchheeeccCceEEeeecc-ccceE
Confidence 443 445789999999999999998776666554 55699999987 669999999999999998 88899
Q ss_pred EEEeccc
Q 008820 544 FSLLLHI 550 (552)
Q Consensus 544 ~~~~gh~ 550 (552)
+.+.||.
T Consensus 362 ~~y~GH~ 368 (399)
T KOG0296|consen 362 FTYTGHQ 368 (399)
T ss_pred EEEecCc
Confidence 9999995
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-31 Score=230.23 Aligned_cols=266 Identities=20% Similarity=0.298 Sum_probs=224.2
Q ss_pred CccccceeeecCcceEEEeeCCCeEEEEE----------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEE
Q 008820 219 GADIDQARAAGGVKDLVNGLSKGNVKFKD----------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVH 286 (552)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~ 286 (552)
...+....|.+++..++++..|..+.+|. ++||+++|..+.|. ++.+++++.|.+|+.||.++|+.++
T Consensus 47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r 126 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIR 126 (338)
T ss_pred cceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeee
Confidence 34588899999999999999999999987 68999999999999 9999999999999999999999999
Q ss_pred EEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEE
Q 008820 287 TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKA 366 (552)
Q Consensus 287 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~i 366 (552)
.+++|...|+++.-..-+..++.+++.|+++++||++.....+... .. ......+|...+..+++|+-|+.|++
T Consensus 127 k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~---~k---yqltAv~f~d~s~qv~sggIdn~ikv 200 (338)
T KOG0265|consen 127 KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE---NK---YQLTAVGFKDTSDQVISGGIDNDIKV 200 (338)
T ss_pred hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc---cc---eeEEEEEecccccceeeccccCceee
Confidence 9999999999998666678899999999999999999654433332 11 11122345556779999999999999
Q ss_pred EECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCC----ceeEEEecCCCCce--EEEEEEcCCCCE
Q 008820 367 WSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDH----SLLTVLEEDSSGAV--SSVLSLTAVQHT 438 (552)
Q Consensus 367 wd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~--~~~~~~s~~~~~ 438 (552)
||++.....+.+.||.++|+.+..+ +.++.+-+.|.++++||++.. +++..+.++..+.. ..-++|+|+++.
T Consensus 201 Wd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~ 280 (338)
T KOG0265|consen 201 WDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTK 280 (338)
T ss_pred eccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCc
Confidence 9999999999999999999999999 459999999999999999853 34666665432211 122589999999
Q ss_pred EEEEECCCcEEEEeC--CcceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEe
Q 008820 439 LVVSHESGSIKVWRN--DKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQE 490 (552)
Q Consensus 439 l~~g~~dg~i~iwd~--~~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd 490 (552)
+.+|+.|..+++||. +..+..+.+|.+.|.++.| ....|.+++.|.+|++=.
T Consensus 281 i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 281 ITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 999999999999994 4578889999999999987 788999999999998743
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-31 Score=259.47 Aligned_cols=231 Identities=27% Similarity=0.449 Sum_probs=203.1
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEE----------------------------------------eecCccceEE
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKD----------------------------------------LQGHRDCVTG 257 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------l~~H~~~V~~ 257 (552)
....+.++.++.+...++.++.+..+.+|. +.||.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 344677888888888888888888887776 3479999999
Q ss_pred EEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccc
Q 008820 258 LAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWN 335 (552)
Q Consensus 258 l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 335 (552)
+.|+ .++|+++|.|++||+|.+.+..++-.++||..+|.++.|+|. +.+++|++.|++.++|..+.. .+++.+.
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~-GyYFatas~D~tArLWs~d~~---~PlRifa 532 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR-GYYFATASHDQTARLWSTDHN---KPLRIFA 532 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC-ceEEEecCCCceeeeeecccC---Cchhhhc
Confidence 9999 899999999999999999999999999999999999999984 678999999999999998864 4444444
Q ss_pred cCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCc
Q 008820 336 EEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHS 413 (552)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~ 413 (552)
+|.. ...+..|+|+.+++++||.|.+|++||+.+|..++.|.||.++|++++|+ +.+|++|+.||.|.+||+.+++
T Consensus 533 ghls--DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 533 GHLS--DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS 610 (707)
T ss_pred cccc--ccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc
Confidence 4432 23457899999999999999999999999999999999999999999999 3499999999999999999999
Q ss_pred eeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcc
Q 008820 414 LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF 456 (552)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 456 (552)
.+..+..| .+.+.+ +.|+.+|..|++|+.|.+|++||..+.
T Consensus 611 ~v~~l~~H-t~ti~S-lsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 611 LVKQLKGH-TGTIYS-LSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred chhhhhcc-cCceeE-EEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999988 666666 699999999999999999999996543
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=262.26 Aligned_cols=248 Identities=23% Similarity=0.371 Sum_probs=213.7
Q ss_pred CCCeEEEEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCC-------------------------------eEE
Q 008820 239 SKGNVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF-------------------------------SHV 285 (552)
Q Consensus 239 ~~~~~~~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~-------------------------------~~~ 285 (552)
....++++++..-...++|..|+ +.++|.|-.|..|++|.+... ...
T Consensus 365 ~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~ 444 (707)
T KOG0263|consen 365 SLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTS 444 (707)
T ss_pred CCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCcee
Confidence 45678889988888899999999 789999999999999987631 223
Q ss_pred EEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEE
Q 008820 286 HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365 (552)
Q Consensus 286 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~ 365 (552)
+++.+|.++|..+.|+|+.. +|++|+.|+++|+|.+++.......+ +|. .......|+|.|-+++||+.|++-+
T Consensus 445 ~~L~GH~GPVyg~sFsPd~r-fLlScSED~svRLWsl~t~s~~V~y~---GH~--~PVwdV~F~P~GyYFatas~D~tAr 518 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRR-FLLSCSEDSSVRLWSLDTWSCLVIYK---GHL--APVWDVQFAPRGYYFATASHDQTAR 518 (707)
T ss_pred EEeecCCCceeeeeeccccc-ceeeccCCcceeeeecccceeEEEec---CCC--cceeeEEecCCceEEEecCCCceee
Confidence 55789999999999999654 88999999999999998754333332 322 2223346889999999999999999
Q ss_pred EEECCCCceeEEecCCCCCeEEEEEeCC--EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEE
Q 008820 366 AWSLLDGTLSCTMSGHKSAVSTLAVCNG--VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH 443 (552)
Q Consensus 366 iwd~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 443 (552)
+|......+.+.+.+|-+.|.|+.|+++ ++++||.|.++|+||..+|..++.|.+| .+.+.+ ++|+|+|++|++|+
T Consensus 519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH-~~~V~a-l~~Sp~Gr~LaSg~ 596 (707)
T KOG0263|consen 519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH-KGPVTA-LAFSPCGRYLASGD 596 (707)
T ss_pred eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC-CCceEE-EEEcCCCceEeecc
Confidence 9999999999999999999999999954 9999999999999999999999999886 456665 79999999999999
Q ss_pred CCCcEEEEeCC--cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCC
Q 008820 444 ESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGD 494 (552)
Q Consensus 444 ~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~ 494 (552)
.||.|.+||+. +.+..+.+|++.|.+++| +|..|++||.|++|++||+...
T Consensus 597 ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 597 EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999965 578899999999999998 9999999999999999998743
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=262.32 Aligned_cols=280 Identities=25% Similarity=0.351 Sum_probs=244.3
Q ss_pred CccceEEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEE-EeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCc
Q 008820 251 HRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHT-FKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHE 329 (552)
Q Consensus 251 H~~~V~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~-~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 329 (552)
|...+.+..|.++++++++.|++|++||..++..+.. +.+|.+.|.++++.. +..++++|+.|.++++||..++.+..
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~ 285 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTH 285 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEE
Confidence 6677888999999999999999999999999999988 999999999999965 77799999999999999998876655
Q ss_pred cccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEeCCCcEEEEEC
Q 008820 330 PLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSL 409 (552)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~ 409 (552)
.+.. +...+.++...+..+++|+.|.+|++|++.++.++..+.+|..+|.++..+++++++|+.|++|++||+
T Consensus 286 ~l~g-------h~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 286 SLQG-------HTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred EecC-------CCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEh
Confidence 5543 334567888888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC---cceeeeecccceEEEEEecCCEEEEEeCCCeE
Q 008820 410 SDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND---KFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTV 486 (552)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~---~~~~~~~~h~~~v~~v~~~~~~l~sgs~dg~i 486 (552)
.++++++.+.+| .+.+.+ +.+... ..+++|+.|++|++||++ +++..+.+|..-+..+.+.+++|++++.|++|
T Consensus 359 ~~~~cl~sl~gH-~~~V~s-l~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~I 435 (537)
T KOG0274|consen 359 RTGKCLKSLSGH-TGRVYS-LIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTI 435 (537)
T ss_pred hhceeeeeecCC-cceEEE-EEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccE
Confidence 999999999986 455555 344443 899999999999999964 46889999999999999999999999999999
Q ss_pred EEEecCCCeeeeeeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEecCCcceeEEE
Q 008820 487 SVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCNRQIPEIFSL 546 (552)
Q Consensus 487 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~~~~~~~~~~ 546 (552)
++||..++++....... +...|.++++....+++++.||.+++||++ ++.....+
T Consensus 436 k~WD~~~~~~~~~~~~~----~~~~v~~l~~~~~~il~s~~~~~~~l~dl~-~~~~~~~l 490 (537)
T KOG0274|consen 436 KLWDAEEGECLRTLEGR----HVGGVSALALGKEEILCSSDDGSVKLWDLR-SGTLIRTL 490 (537)
T ss_pred EEeecccCceeeeeccC----CcccEEEeecCcceEEEEecCCeeEEEecc-cCchhhhh
Confidence 99999998887776653 256688888877789999999999999998 45544443
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-30 Score=259.75 Aligned_cols=283 Identities=23% Similarity=0.387 Sum_probs=233.7
Q ss_pred EEeecC-ccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCe--EEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 008820 246 KDLQGH-RDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS--HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (552)
Q Consensus 246 ~~l~~H-~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vw 320 (552)
..+.+| ...|.++.|+ |+.+++++.|+.+++|+..+.+ ..+.+.+|...|.+++|+|++. ++++++.|++|++|
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~-~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS-YLLSGSDDKTLRIW 230 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc-EEEEecCCceEEEe
Confidence 345454 7899999999 9999999999999999998877 7788889999999999999776 88999999999999
Q ss_pred eCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEE
Q 008820 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSG 398 (552)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~ 398 (552)
|+.. ....++.+.+|.... ...+|+++++.+++|+.|++|++||+++++++..+.+|.+.|++++|+ +++|+++
T Consensus 231 d~~~--~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 231 DLKD--DGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred eccC--CCeEEEEecCCCCce--EEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc
Confidence 9932 234555555655433 456899999999999999999999999999999999999999999999 4499999
Q ss_pred eCCCcEEEEECCCCc--eeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEE---
Q 008820 399 SRDGTIRLWSLSDHS--LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVF--- 471 (552)
Q Consensus 399 ~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~--- 471 (552)
+.|+.|++||+.++. +...+...........+.|+|++.++++++.|+.+++||++ .....+.+|...+.++.
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 999999999999999 55666655443134447999999999999999999999976 46778888887654442
Q ss_pred --ecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEEe--CCCeEEEEEec
Q 008820 472 --LEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGC--ADRTVKIALCN 537 (552)
Q Consensus 472 --~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s--~Dg~v~iw~~~ 537 (552)
..+.++++|+.|+.|++||+.++........+. ...+..+.+++ +.+++++ .|+.+++|..+
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~----~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS----KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC----CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 289999999999999999999866655544432 45678888885 5577777 79999999875
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-29 Score=216.20 Aligned_cols=261 Identities=18% Similarity=0.314 Sum_probs=205.6
Q ss_pred ceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCe--EEEEEeCCCCCeEEE
Q 008820 232 KDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS--HVHTFKGHDHKVMAV 298 (552)
Q Consensus 232 ~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~h~~~v~~v 298 (552)
-.+++.+.|.++++|+ ++-..+.|+.+... ++.||+|+. ..||+||+++++ ++.++.+|+..|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 3456666777777766 44556789999998 677777765 479999998765 589999999999999
Q ss_pred EEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008820 299 VYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM 378 (552)
Q Consensus 299 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~ 378 (552)
.|..++. .+++|+.||+++|||++.....+.++.. .......++|+...|++|..+|.|++||+....+...+
T Consensus 90 gF~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~~~------spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l 162 (311)
T KOG0315|consen 90 GFQCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQHN------SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL 162 (311)
T ss_pred EEeecCe-EEEecCCCceEEEEeccCcccchhccCC------CCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc
Confidence 9987554 7799999999999999975544433322 11123356677779999999999999999988776655
Q ss_pred -cCCCCCeEEEEEe-C-CEEEEEeCCCcEEEEECCCCc------eeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEE
Q 008820 379 -SGHKSAVSTLAVC-N-GVLYSGSRDGTIRLWSLSDHS------LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIK 449 (552)
Q Consensus 379 -~~h~~~v~~l~~~-~-~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 449 (552)
......|.++... + .+++.+...|+.++|++-+.. ++.+++.+ .+.+.. +.+||++++|++++.|.+++
T Consensus 163 iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah-~~~il~-C~lSPd~k~lat~ssdktv~ 240 (311)
T KOG0315|consen 163 IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH-NGHILR-CLLSPDVKYLATCSSDKTVK 240 (311)
T ss_pred CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc-cceEEE-EEECCCCcEEEeecCCceEE
Confidence 3345678888887 4 488999999999999997643 45556655 344554 58999999999999999999
Q ss_pred EEeCCc---ceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeecc
Q 008820 450 VWRNDK---FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIP 502 (552)
Q Consensus 450 iwd~~~---~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~ 502 (552)
||++.. ....+++|...+....| ||.||++|+.|+.+++||++.++.......
T Consensus 241 iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 241 IWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG 298 (311)
T ss_pred EEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCC
Confidence 999765 45678899999999888 999999999999999999998876655444
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.2e-32 Score=245.85 Aligned_cols=266 Identities=20% Similarity=0.366 Sum_probs=222.8
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEE
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVH 286 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~ 286 (552)
-..+++.+...+++++++++...|...+|. +++|..+|+++.|+ +.+++||+.+|.|++|+.+ ...++
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk 173 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVK 173 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhH
Confidence 345688899999999999999999999998 47899999999999 9999999999999999965 44455
Q ss_pred EEeCCC-CCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEE
Q 008820 287 TFKGHD-HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365 (552)
Q Consensus 287 ~~~~h~-~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~ 365 (552)
.++.|. ..|++++|+|++. .+++|+.||+|+|||...++....+.. + .+.. ....++|....+++|+.|..|+
T Consensus 174 ~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~G---H-gwdV-ksvdWHP~kgLiasgskDnlVK 247 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRG---H-GWDV-KSVDWHPTKGLIASGSKDNLVK 247 (464)
T ss_pred HhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheecc---C-CCCc-ceeccCCccceeEEccCCceeE
Confidence 555554 9999999999554 779999999999999987665554432 2 2122 2346677777999999999999
Q ss_pred EEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcC-CCCEEEEE
Q 008820 366 AWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA-VQHTLVVS 442 (552)
Q Consensus 366 iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g 442 (552)
+||.++++++.++.+|+..|..+.|+ +++|+++|.|..++++|+++.+.+.+++.|.+ .+.+ +.|+| ...+|.+|
T Consensus 248 lWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk-dv~~-~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 248 LWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK-DVTS-LTWHPLNESLFTSG 325 (464)
T ss_pred eecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh-hhee-eccccccccceeec
Confidence 99999999999999999999999999 55999999999999999999999999988754 3444 46666 56788899
Q ss_pred ECCCcEEEEeCC--cceeee-ecccceEEEEEe--cCCEEEEEeCCCeEEEEecC
Q 008820 443 HESGSIKVWRND--KFMKSM-QTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 443 ~~dg~i~iwd~~--~~~~~~-~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~ 492 (552)
+.||.|..|... +++..+ .+|...|.++++ -|..|++|+.|.++++|.-.
T Consensus 326 g~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 326 GSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred cCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 999999999854 344333 579999999997 79999999999999999653
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-30 Score=237.12 Aligned_cols=279 Identities=19% Similarity=0.250 Sum_probs=224.6
Q ss_pred EEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCC---eEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 008820 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF---SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (552)
Q Consensus 246 ~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~---~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vw 320 (552)
..+..|.+.|+-+.|+ |++||||+.|.+..+|++..- +..+++.+|..+|..+.|+|++. ++++|+.|..+++|
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr-yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR-YLLACGFDEVLSLW 296 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC-eEEecCchHheeec
Confidence 4478999999999999 999999999999999987543 45788999999999999999776 66788888889999
Q ss_pred eCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCC-CCeEEEEEe-C-CEEEE
Q 008820 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHK-SAVSTLAVC-N-GVLYS 397 (552)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~-~-~~l~s 397 (552)
|+.++........- .. ......++.|||..+++|+.|+++..||++ |+.....++-. ..|.+++.. + ..+++
T Consensus 297 Dv~tgd~~~~y~~~---~~-~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~ 371 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSG---LG-FSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLL 371 (519)
T ss_pred cCCcchhhhhcccC---cC-CCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEE
Confidence 99987654433322 11 223456899999999999999999999985 44455554433 458888887 4 48888
Q ss_pred EeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeeecccceEEEE--Ee-
Q 008820 398 GSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAV--FL- 472 (552)
Q Consensus 398 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~h~~~v~~v--~~- 472 (552)
.+.|..|++++..+......+..+ ..+.+ .++|.+++++++.-.+..+++||+.+ .++.+.||+..-.-+ +|
T Consensus 372 v~~d~~i~l~~~e~~~dr~lise~--~~its-~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg 448 (519)
T KOG0293|consen 372 VTVDKKIRLYNREARVDRGLISEE--QPITS-FSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG 448 (519)
T ss_pred Eecccceeeechhhhhhhcccccc--CceeE-EEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC
Confidence 899999999999876655555443 33444 69999999999999999999999764 567788887654333 34
Q ss_pred --cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC---CeEEEEeCCCeEEEEEecC
Q 008820 473 --EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ---GKLFVGCADRTVKIALCNR 538 (552)
Q Consensus 473 --~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~s~s~Dg~v~iw~~~~ 538 (552)
+..++++||+|+.|+||+..++++...+..+ ...|++++|+| ..+|+||.||+||||...+
T Consensus 449 g~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH-----s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 449 GGNDKFIASGSEDSKVYIWHRISGKLLAVLSGH-----SKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCcceEEecCCCceEEEEEccCCceeEeecCC-----cceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 6789999999999999999999888877664 67799999996 3599999999999999874
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-29 Score=239.91 Aligned_cols=277 Identities=30% Similarity=0.458 Sum_probs=227.6
Q ss_pred EEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC
Q 008820 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (552)
Q Consensus 246 ~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (552)
..+.+|.++|++++|+ ++++++++.||.|++|++.+++....+..|...+..+.|+|++ ..+++++.||.|++||+.
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDLE 81 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcC
Confidence 4577999999999999 7999999999999999999998888899999999999999976 577899999999999998
Q ss_pred CCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeC-C-EEEEEeCC
Q 008820 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN-G-VLYSGSRD 401 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~-~l~s~~~d 401 (552)
.......+. .+.. ......+.++++++++++.||.|.+||+++++....+..|...+.++.|++ + ++++++.|
T Consensus 82 ~~~~~~~~~---~~~~--~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 156 (289)
T cd00200 82 TGECVRTLT---GHTS--YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD 156 (289)
T ss_pred cccceEEEe---ccCC--cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCC
Confidence 653333222 2211 122335666667888888899999999999999999999999999999994 4 67777779
Q ss_pred CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEe--cCCEE
Q 008820 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWL 477 (552)
Q Consensus 402 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l 477 (552)
+.|++||+++++.+..+..+. ..+.. +.++++++.+++++.|+.|++||.+ +....+..|...+.++.+ ++.++
T Consensus 157 ~~i~i~d~~~~~~~~~~~~~~-~~i~~-~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 234 (289)
T cd00200 157 GTIKLWDLRTGKCVATLTGHT-GEVNS-VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL 234 (289)
T ss_pred CcEEEEEccccccceeEecCc-cccce-EEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEE
Confidence 999999999888888887553 34444 6899999999999999999999975 466677788889999887 56788
Q ss_pred EEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEEeCCCeEEEEE
Q 008820 478 FTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGCADRTVKIAL 535 (552)
Q Consensus 478 ~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~Dg~v~iw~ 535 (552)
++++.||.|++||+.+++....+.. +...+.+++|++ ..+++++.||.|++|+
T Consensus 235 ~~~~~~~~i~i~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 235 ASGSEDGTIRVWDLRTGECVQTLSG-----HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEcCCCcEEEEEcCCceeEEEccc-----cCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 8888899999999987766555442 256799999996 5699999999999996
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=224.98 Aligned_cols=307 Identities=12% Similarity=0.145 Sum_probs=243.0
Q ss_pred ccccceeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008820 220 ADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF 288 (552)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~ 288 (552)
+.+.++...+..+.++++..+....+|+ +.||++.|+++.|+ |.+||||+.+|.|+||+..++.....+
T Consensus 65 ~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~ 144 (399)
T KOG0296|consen 65 DSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL 144 (399)
T ss_pred CceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe
Confidence 3455555555555555666555555554 78999999999999 999999999999999999999999988
Q ss_pred eCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEE
Q 008820 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWS 368 (552)
Q Consensus 289 ~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd 368 (552)
...-+.+.=+.|+| ...+|++|+.||.+.+|.+.+.. ..+.+.++. .....-.|.|+|+.+++|..||+|++||
T Consensus 145 ~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~---~~kv~~Gh~--~~ct~G~f~pdGKr~~tgy~dgti~~Wn 218 (399)
T KOG0296|consen 145 DQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQA---LCKVMSGHN--SPCTCGEFIPDGKRILTGYDDGTIIVWN 218 (399)
T ss_pred ecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcc---eeeEecCCC--CCcccccccCCCceEEEEecCceEEEEe
Confidence 76677888899999 55688999999999999998653 333333333 2233457899999999999999999999
Q ss_pred CCCCceeEEecC-CCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecC-------CCCceEE--EEEEcCCC
Q 008820 369 LLDGTLSCTMSG-HKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEED-------SSGAVSS--VLSLTAVQ 436 (552)
Q Consensus 369 ~~~~~~~~~~~~-h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~--~~~~s~~~ 436 (552)
+.+++++.++.. ......++.++ +..++.|+.++.+++-+..+|+.+...... +.....+ .+.++..=
T Consensus 219 ~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l 298 (399)
T KOG0296|consen 219 PKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL 298 (399)
T ss_pred cCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccccc
Confidence 999999998863 23456777777 558999999999999999999988776631 1111111 13445555
Q ss_pred CEEEEEECCCcEEEEeCCc-ceeeeecccceEEEEEecC-CEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEE
Q 008820 437 HTLVVSHESGSIKVWRNDK-FMKSMQTHKGSVFAVFLEG-KWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITA 514 (552)
Q Consensus 437 ~~l~~g~~dg~i~iwd~~~-~~~~~~~h~~~v~~v~~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 514 (552)
.+.++|+-||+|.|||+.. ..+..-.|...|+.+.|.+ .+|++++.+|.|+.||.+++++...+..+ ...|.+
T Consensus 299 pL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH-----~~~Il~ 373 (399)
T KOG0296|consen 299 PLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGH-----QMGILD 373 (399)
T ss_pred chhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecC-----chheeE
Confidence 6889999999999999764 4555567899999999954 89999999999999999999998887764 667999
Q ss_pred EEEeC--CeEEEEeCCCeEEEEEec
Q 008820 515 LLYWQ--GKLFVGCADRTVKIALCN 537 (552)
Q Consensus 515 l~~~~--~~l~s~s~Dg~v~iw~~~ 537 (552)
++.++ ++++|+|.|++.+||+++
T Consensus 374 f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 374 FALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEcCCCcEEEEecCCCeEEEEecC
Confidence 99996 459999999999999875
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=240.06 Aligned_cols=311 Identities=20% Similarity=0.313 Sum_probs=245.1
Q ss_pred ccccceeeecCcceEEEeeCCCeEEEEEeec---------CccceEEEEEc--CCEEEEEeCC-CcEEEEeCCCCeEEEE
Q 008820 220 ADIDQARAAGGVKDLVNGLSKGNVKFKDLQG---------HRDCVTGLAVG--GGFLFSSSFD-KSIHVWSLKDFSHVHT 287 (552)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------H~~~V~~l~~s--~~~l~s~s~d-g~I~iwd~~~~~~~~~ 287 (552)
..+.++.+....+.++++...|...++.+.+ -+.+|..++|+ |+.+|.|+.. |.+-||++.+...+..
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK 345 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK 345 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee
Confidence 5677888888899999999999887777644 35688899999 9999998765 8899999999999999
Q ss_pred EeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEE
Q 008820 288 FKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAW 367 (552)
Q Consensus 288 ~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iw 367 (552)
.++|...+++++++|+++ ++++|+.||.|++||..++- ++.++..|.. ......|+..++.+++.+-||+|+.|
T Consensus 346 QQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~Sgf---C~vTFteHts--~Vt~v~f~~~g~~llssSLDGtVRAw 419 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGF---CFVTFTEHTS--GVTAVQFTARGNVLLSSSLDGTVRAW 419 (893)
T ss_pred ccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCce---EEEEeccCCC--ceEEEEEEecCCEEEEeecCCeEEee
Confidence 999999999999999776 78999999999999998654 4444444443 22345777889999999999999999
Q ss_pred ECCCCceeEEecCCC-CCeEEEEEe--CCEEEEEeCCC-cEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEE
Q 008820 368 SLLDGTLSCTMSGHK-SAVSTLAVC--NGVLYSGSRDG-TIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH 443 (552)
Q Consensus 368 d~~~~~~~~~~~~h~-~~v~~l~~~--~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 443 (552)
|+...+..+++.... -...|++.. +..+.+|+.|. .|.+|++++|+.+-.+.+| .+++.+ ++|+|++..|++|+
T Consensus 420 DlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGH-EgPVs~-l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 420 DLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGH-EGPVSG-LSFSPDGSLLASGS 497 (893)
T ss_pred eecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCC-CCccee-eEEccccCeEEecc
Confidence 999999999887533 345677776 44777777765 6999999999999999988 466665 69999999999999
Q ss_pred CCCcEEEEeCCc---ceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeecc---------------C
Q 008820 444 ESGSIKVWRNDK---FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIP---------------T 503 (552)
Q Consensus 444 ~dg~i~iwd~~~---~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~---------------~ 503 (552)
.|.+|++||.-. .+.++ .+...+..++| +|+.|++++-||.|.+||............ .
T Consensus 498 WDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta 576 (893)
T KOG0291|consen 498 WDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITA 576 (893)
T ss_pred ccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeeh
Confidence 999999999432 33333 34556666655 899999999999999999875543321111 1
Q ss_pred CCcccCcceEEEEEe-C-CeEEEEeCCCeEEEEEecCC
Q 008820 504 GAIPCGSVITALLYW-Q-GKLFVGCADRTVKIALCNRQ 539 (552)
Q Consensus 504 ~~~~~~~~v~~l~~~-~-~~l~s~s~Dg~v~iw~~~~~ 539 (552)
.........+.++++ + +.+++|+....|+||++...
T Consensus 577 ~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 577 ENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred hhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchh
Confidence 111224568899999 4 45999999999999999843
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-29 Score=229.06 Aligned_cols=269 Identities=20% Similarity=0.304 Sum_probs=229.5
Q ss_pred CCCCCCccccceeeecCcceEEEeeCCCeEEEEEe--------ecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCe
Q 008820 214 AENSDGADIDQARAAGGVKDLVNGLSKGNVKFKDL--------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS 283 (552)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~ 283 (552)
...++...+.......++..++++..+|.+++|+. ..|+++|.++.|+ |.+|++++.|+++.+||..++.
T Consensus 230 ~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 230 KSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred ccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce
Confidence 44455567889999999999999999999999985 4599999999999 9999999999999999999999
Q ss_pred EEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCc
Q 008820 284 HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT 363 (552)
Q Consensus 284 ~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~ 363 (552)
..+.+.-|..+-.+|.|..++ -+++++.|+.|+++.+.... +..++.+|++. .....+.|.+.+|+++|.|++
T Consensus 310 ~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~---P~~t~~GH~g~--V~alk~n~tg~LLaS~SdD~T 382 (524)
T KOG0273|consen 310 VKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDR---PVKTFIGHHGE--VNALKWNPTGSLLASCSDDGT 382 (524)
T ss_pred EEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCC---cceeeecccCc--eEEEEECCCCceEEEecCCCe
Confidence 999999999988899997544 57999999999999998554 44444444431 223456666889999999999
Q ss_pred EEEEECCCCceeEEecCCCCCeEEEEEeC-----------CEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEE
Q 008820 364 IKAWSLLDGTLSCTMSGHKSAVSTLAVCN-----------GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSL 432 (552)
Q Consensus 364 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~-----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 432 (552)
++||..........+.+|...|..+.|++ ..+++++.|++|++||+..+.+++++..|. .++.. ++|
T Consensus 383 lkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~-~pVys-vaf 460 (524)
T KOG0273|consen 383 LKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQ-EPVYS-VAF 460 (524)
T ss_pred eEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCC-CceEE-EEe
Confidence 99999999999999999999999999971 179999999999999999999999997764 44555 799
Q ss_pred cCCCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecC
Q 008820 433 TAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 433 s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~ 492 (552)
+|+|+++++|+.||.|.+|+.+ +..+.+.+ .+.|..+.| +|..|..+-.|+.+++.|++
T Consensus 461 S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 461 SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999999999999999954 56666665 455888888 78999999999999999875
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=250.76 Aligned_cols=282 Identities=19% Similarity=0.306 Sum_probs=233.7
Q ss_pred EeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCC
Q 008820 247 DLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF 324 (552)
Q Consensus 247 ~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 324 (552)
.|+..+..|.+++|+ ..+++++-..|.|++||..-+.++..|..|.++|..++|+|... ++++|+.|-.|++|+..+
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCC-eEEecCCccEEEEEeccc
Confidence 355667789999999 78999999999999999999999999999999999999999654 889999999999999986
Q ss_pred CCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCC
Q 008820 325 PLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDG 402 (552)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg 402 (552)
.+ ++.++.+|-+. .....|++.--.|+++|.|.+|+||+..+++++..+.||...|.|..|+ ++.++++|.|.
T Consensus 83 rr---clftL~GHlDY--VRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQ 157 (1202)
T KOG0292|consen 83 RR---CLFTLLGHLDY--VRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQ 157 (1202)
T ss_pred ce---ehhhhccccce--eEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccc
Confidence 54 44444455443 2334677777799999999999999999999999999999999999999 45999999999
Q ss_pred cEEEEECCCCc-----------------------------eeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 008820 403 TIRLWSLSDHS-----------------------------LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN 453 (552)
Q Consensus 403 ~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 453 (552)
+||+||+..-+ ..+.+.+|..+.-. ++|.|.-.++++|+.|..|++|..
T Consensus 158 TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNw--aAfhpTlpliVSG~DDRqVKlWrm 235 (1202)
T KOG0292|consen 158 TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNW--AAFHPTLPLIVSGADDRQVKLWRM 235 (1202)
T ss_pred eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccce--EEecCCcceEEecCCcceeeEEEe
Confidence 99999985211 11233444333333 589999999999999999999986
Q ss_pred Cc----ceeeeecccceEEEEEecC--CEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCe-EEEEe
Q 008820 454 DK----FMKSMQTHKGSVFAVFLEG--KWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK-LFVGC 526 (552)
Q Consensus 454 ~~----~~~~~~~h~~~v~~v~~~~--~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~s~s 526 (552)
.. .+.+..+|.+.|.++-|++ ..++|.|+|++|++||+...+....+... ......++.+|.. |+.++
T Consensus 236 netKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre-----ndRFW~laahP~lNLfAAg 310 (1202)
T KOG0292|consen 236 NETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE-----NDRFWILAAHPELNLFAAG 310 (1202)
T ss_pred ccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeecc-----CCeEEEEEecCCcceeeee
Confidence 53 4557789999999998854 89999999999999999988777776554 5678888999866 88888
Q ss_pred CCCeEEEEEecCCcc
Q 008820 527 ADRTVKIALCNRQIP 541 (552)
Q Consensus 527 ~Dg~v~iw~~~~~~~ 541 (552)
.|+-+.+|.+++..+
T Consensus 311 HDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 311 HDSGMIVFKLERERP 325 (1202)
T ss_pred cCCceEEEEEcccCc
Confidence 899999999985444
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=215.93 Aligned_cols=268 Identities=16% Similarity=0.278 Sum_probs=225.7
Q ss_pred EEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEE--EEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEe
Q 008820 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVH--TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (552)
Q Consensus 246 ~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~--~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 321 (552)
+++++|...|.+++|+ |..|++|+.|+++++|+++..+... ...+|.+.|-.++|.|....++++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5678999999999999 9999999999999999998775543 34689999999999999999999999999999999
Q ss_pred CCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEe
Q 008820 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGS 399 (552)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~ 399 (552)
++.+++...+..-.+. -...++|+|+++++++.|..|...|.++.+.....+ ....+.-++|+ +++++...
T Consensus 94 ~r~~k~~~~i~~~~en------i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~ 166 (313)
T KOG1407|consen 94 IRSGKCTARIETKGEN------INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTN 166 (313)
T ss_pred eccCcEEEEeeccCcc------eEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEec
Confidence 9987655444332221 235789999999999999999999999888877665 45567888888 45777777
Q ss_pred CCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeeecccceEEEEEe--cCC
Q 008820 400 RDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGK 475 (552)
Q Consensus 400 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~h~~~v~~v~~--~~~ 475 (552)
..|+|.|......+++..++.|. ....+ +.|+|+|+++++|+.|..+.+||..+ +++.+..+.-+|..++| ||+
T Consensus 167 GlG~v~ILsypsLkpv~si~AH~-snCic-I~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~ 244 (313)
T KOG1407|consen 167 GLGCVEILSYPSLKPVQSIKAHP-SNCIC-IEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGR 244 (313)
T ss_pred CCceEEEEeccccccccccccCC-cceEE-EEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcc
Confidence 78999999999999999999885 34444 69999999999999999999999887 56788889999999998 999
Q ss_pred EEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCe--EEEEeCC
Q 008820 476 WLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK--LFVGCAD 528 (552)
Q Consensus 476 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~s~s~D 528 (552)
+||+||+|-.|-|=+++++....... +.++-..++|+|.+ |+-++.|
T Consensus 245 ~lASaSEDh~IDIA~vetGd~~~eI~------~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 245 MLASASEDHFIDIAEVETGDRVWEIP------CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eeeccCccceEEeEecccCCeEEEee------ccCCceeEEecCCCceeeEEecC
Confidence 99999999999999999987766543 47778999999976 5555554
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=211.85 Aligned_cols=260 Identities=23% Similarity=0.306 Sum_probs=210.2
Q ss_pred ccceeeecC-cceEEEeeCCCeEEEEEee-------------cCccceEEEEEc--CCEEEEEeCCCcEEEEeCC--CCe
Q 008820 222 IDQARAAGG-VKDLVNGLSKGNVKFKDLQ-------------GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK--DFS 283 (552)
Q Consensus 222 ~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-------------~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~--~~~ 283 (552)
+..++..+. +..++++..+..+++|... +|+..|++++|+ |++|++||.|.++.||.-. +.+
T Consensus 17 ~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efe 96 (312)
T KOG0645|consen 17 VWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFE 96 (312)
T ss_pred EEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCcee
Confidence 555666666 6678888889999988865 499999999998 9999999999999999755 457
Q ss_pred EEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCc
Q 008820 284 HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT 363 (552)
Q Consensus 284 ~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~ 363 (552)
++.++.||...|.+++|++++. +||+|+.|+.|-+|.+...........+..|.... ....++|...+|++++.|++
T Consensus 97 cv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDV--K~V~WHPt~dlL~S~SYDnT 173 (312)
T KOG0645|consen 97 CVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDV--KHVIWHPTEDLLFSCSYDNT 173 (312)
T ss_pred EEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccc--cEEEEcCCcceeEEeccCCe
Confidence 8999999999999999999665 88999999999999999776666666666655422 23467787789999999999
Q ss_pred EEEEECC---CCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCE
Q 008820 364 IKAWSLL---DGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHT 438 (552)
Q Consensus 364 i~iwd~~---~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 438 (552)
|++|+-. .-.+++++.+|...|.+++|+ +..+++++.|++++||-..+ .+...+...... +++. ...
T Consensus 174 Ik~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~-v~W~--~~~ 245 (312)
T KOG0645|consen 174 IKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSGMHSRALYD-VPWD--NGV 245 (312)
T ss_pred EEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----CcchhcccceEe-eeec--ccc
Confidence 9999876 336899999999999999999 44999999999999998663 233333444554 4565 558
Q ss_pred EEEEECCCcEEEEeCCc----c-----eeeeecccceEEEEEec---CCEEEEEeCCCeEEEEecC
Q 008820 439 LVVSHESGSIKVWRNDK----F-----MKSMQTHKGSVFAVFLE---GKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 439 l~~g~~dg~i~iwd~~~----~-----~~~~~~h~~~v~~v~~~---~~~l~sgs~dg~i~iwd~~ 492 (552)
|++++.|+.|++|.... + .+.-..|...|+++.|+ .++|++|+.||.|++|.+.
T Consensus 246 IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 246 IASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 99999999999996321 1 12335689999999983 5799999999999999874
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=252.08 Aligned_cols=239 Identities=29% Similarity=0.420 Sum_probs=210.3
Q ss_pred eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCC
Q 008820 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFP 325 (552)
Q Consensus 248 l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~ 325 (552)
+.||.+.|+++++. ++++++|+.|.++++||..+|.+.+++.+|.+.|.++.. .+.++++|+.|.+|++|+++++
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~---~~~~~~sgs~D~tVkVW~v~n~ 321 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI---DPFLLVSGSRDNTVKVWDVTNG 321 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc---cCceEeeccCCceEEEEeccCc
Confidence 89999999999999 999999999999999999999999999999999999987 4557889999999999999976
Q ss_pred CCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeC-CEEEEEeCCCcE
Q 008820 326 LGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN-GVLYSGSRDGTI 404 (552)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~~~dg~i 404 (552)
.....+.. +...+.++..++.++++|+.|++|++||+.++++++++.+|...|.++.+.. +.+++|+.|++|
T Consensus 322 ~~l~l~~~-------h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 322 ACLNLLRG-------HTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTI 394 (537)
T ss_pred ceEEEecc-------ccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccce
Confidence 54444433 3335778888899999999999999999999999999999999999999987 899999999999
Q ss_pred EEEECCCC-ceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeC--Ccceeeeec-ccceEEEEEecCCEEEEE
Q 008820 405 RLWSLSDH-SLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFMKSMQT-HKGSVFAVFLEGKWLFTG 480 (552)
Q Consensus 405 ~iwd~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~--~~~~~~~~~-h~~~v~~v~~~~~~l~sg 480 (552)
++||+++. +++.++..+.. .+ ..+...+++|++++.|++|++||. +++.+.+.+ |...|.++.+....++++
T Consensus 395 kvWdl~~~~~c~~tl~~h~~-~v---~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s 470 (537)
T KOG0274|consen 395 KVWDLRTKRKCIHTLQGHTS-LV---SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCS 470 (537)
T ss_pred EeecCCchhhhhhhhcCCcc-cc---cccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEE
Confidence 99999999 89999987743 22 345566889999999999999984 467888888 778999988887889999
Q ss_pred eCCCeEEEEecCCCeeeeee
Q 008820 481 GWDKTVSVQELAGDEFEEDV 500 (552)
Q Consensus 481 s~dg~i~iwd~~~~~~~~~~ 500 (552)
+.||++++||++++......
T Consensus 471 ~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 471 SDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ecCCeeEEEecccCchhhhh
Confidence 99999999999998776654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=234.92 Aligned_cols=259 Identities=19% Similarity=0.282 Sum_probs=216.4
Q ss_pred ccceeeecCcceEEEeeCCCeEEEEEee---------cCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeC
Q 008820 222 IDQARAAGGVKDLVNGLSKGNVKFKDLQ---------GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKG 290 (552)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 290 (552)
+.++.+.+...-++.+..+|.+++|+++ -..-+|++..|- .+++++|+.|..||||++++++.++.|..
T Consensus 16 VKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeA 95 (794)
T KOG0276|consen 16 VKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEA 95 (794)
T ss_pred eeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeec
Confidence 6667777777888888999999999854 345688888887 88999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEee-CCCEEEEeeCCCcEEEEEC
Q 008820 291 HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAWSL 369 (552)
Q Consensus 291 h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sgs~dg~i~iwd~ 369 (552)
|.+.|.+++.+|..+ +++++|.|-+|++||.+.. ....+.+.+|.. ..-..+|.| |.+.+++++-|++|++|.+
T Consensus 96 H~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~--wa~~qtfeGH~H--yVMqv~fnPkD~ntFaS~sLDrTVKVWsl 170 (794)
T KOG0276|consen 96 HSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENE--WACEQTFEGHEH--YVMQVAFNPKDPNTFASASLDRTVKVWSL 170 (794)
T ss_pred cccceeeeeecCCCC-eEEecCCccEEEEeeccCc--eeeeeEEcCcce--EEEEEEecCCCccceeeeeccccEEEEEc
Confidence 999999999999665 7799999999999999843 345556666653 333346666 5669999999999999999
Q ss_pred CCCceeEEecCCCCCeEEEEEe-CC---EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECC
Q 008820 370 LDGTLSCTMSGHKSAVSTLAVC-NG---VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES 445 (552)
Q Consensus 370 ~~~~~~~~~~~h~~~v~~l~~~-~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 445 (552)
.+..+..++.+|...|+|+.+. ++ +|++|+.|.+|++||.++..+++++.+|.. .+.. .+|.|.-.++++|++|
T Consensus 171 gs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~-Nvs~-v~fhp~lpiiisgsED 248 (794)
T KOG0276|consen 171 GSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN-NVSF-VFFHPELPIIISGSED 248 (794)
T ss_pred CCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc-cceE-EEecCCCcEEEEecCC
Confidence 9999999999999999999998 33 999999999999999999999999998854 4444 6899999999999999
Q ss_pred CcEEEEeCCc--ceeeeecccceEEEEEe--cCCEEEEEeCCCeEE
Q 008820 446 GSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVS 487 (552)
Q Consensus 446 g~i~iwd~~~--~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~ 487 (552)
|+++||+..+ ...++...-..++|+.. .++.++.|..+|.|.
T Consensus 249 GTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 249 GTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred ccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 9999998653 55566666678888874 556677777666654
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-28 Score=262.85 Aligned_cols=266 Identities=20% Similarity=0.307 Sum_probs=215.6
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEEee----------------cCccceEEEEEc---CCEEEEEeCCCcEEEEe
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKDLQ----------------GHRDCVTGLAVG---GGFLFSSSFDKSIHVWS 278 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------------~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd 278 (552)
+...+..+.+++++..++++..++.+++|++. .+...|.+++|+ +.+|++++.||+|++||
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 34567888999999999999999999999853 134578899997 68999999999999999
Q ss_pred CCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEE-eeCCCEEEE
Q 008820 279 LKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHAL-TTSGRYLYT 357 (552)
Q Consensus 279 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~s 357 (552)
+.+++.+..+.+|.+.|++++|+|.++.+|++|+.||+|++||+.++.....+. .+. ... ...+ ++++.++++
T Consensus 562 ~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~---~~~--~v~-~v~~~~~~g~~lat 635 (793)
T PLN00181 562 VARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK---TKA--NIC-CVQFPSESGRSLAF 635 (793)
T ss_pred CCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe---cCC--CeE-EEEEeCCCCCEEEE
Confidence 999999999999999999999998777799999999999999998654332222 111 122 2234 456889999
Q ss_pred eeCCCcEEEEECCCCc-eeEEecCCCCCeEEEEEe-CCEEEEEeCCCcEEEEECCCC------ceeEEEecCCCCceEEE
Q 008820 358 GSGDRTIKAWSLLDGT-LSCTMSGHKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDH------SLLTVLEEDSSGAVSSV 429 (552)
Q Consensus 358 gs~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~ 429 (552)
|+.||.|++||+++.+ .+..+.+|...|.++.|. ++.+++++.|++|++||++.+ ..+..+..+. ..+. .
T Consensus 636 gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~-~~i~-~ 713 (793)
T PLN00181 636 GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT-NVKN-F 713 (793)
T ss_pred EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC-CCee-E
Confidence 9999999999998765 567888999999999998 559999999999999999753 4566776653 3333 3
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCcc--eee-------------eecccceEEEEEe--cCCEEEEEeCCCeEEEEec
Q 008820 430 LSLTAVQHTLVVSHESGSIKVWRNDKF--MKS-------------MQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQEL 491 (552)
Q Consensus 430 ~~~s~~~~~l~~g~~dg~i~iwd~~~~--~~~-------------~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~ 491 (552)
+++++++.+|++|+.|+.|++|+.... ... ...|...|.++.| ++..|++|+.||.|++|++
T Consensus 714 v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 714 VGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 689999999999999999999995422 111 1235567888887 7889999999999999996
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=231.74 Aligned_cols=274 Identities=19% Similarity=0.272 Sum_probs=221.4
Q ss_pred EEEeecCccceEEEEEc---CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEe
Q 008820 245 FKDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (552)
Q Consensus 245 ~~~l~~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 321 (552)
+-.|.||.+.|.|++=+ -..++||+.||.|+|||+.+..+..+++.|.+.|..+++.. ..+++++.|.+|+.|.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeeee
Confidence 44578999999999998 36799999999999999999999999999999999999965 4578999999999999
Q ss_pred CCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe---CCEEEEE
Q 008820 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLYSG 398 (552)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~ 398 (552)
++.+ +...+.+.... ..+ .....++.++|++. .|.|||.+...++..+.--...|.++.|+ .+.|++|
T Consensus 136 ~~~~----p~~tilg~s~~--~gI-dh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 136 IDGP----PLHTILGKSVY--LGI-DHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC 206 (433)
T ss_pred ccCC----cceeeeccccc--ccc-ccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeee
Confidence 8753 33332222110 011 22334567888876 59999999999999998888899999999 3488899
Q ss_pred eCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC---cceeeeecccceEEEEEe--c
Q 008820 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND---KFMKSMQTHKGSVFAVFL--E 473 (552)
Q Consensus 399 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~---~~~~~~~~h~~~v~~v~~--~ 473 (552)
+.|+.|.+||++++.+++.+..... +..++|+|.+-.+++|++|..++.||++ .++....+|.+.|.++.| .
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfspt 283 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPT 283 (433)
T ss_pred ccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCC
Confidence 9999999999999999887765432 2236999988889999999999999966 567778889999999887 8
Q ss_pred CCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEe-C-CeEEEEeCCCeEEEEEec
Q 008820 474 GKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-Q-GKLFVGCADRTVKIALCN 537 (552)
Q Consensus 474 ~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~-~~l~s~s~Dg~v~iw~~~ 537 (552)
|+-+++||.|.+|+||.++.+......... . ...|.++.|+ + .++++||.|+.|++|..+
T Consensus 284 G~EfvsgsyDksIRIf~~~~~~SRdiYhtk-R---Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 284 GQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-R---MQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred cchhccccccceEEEeecCCCcchhhhhHh-h---hheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 999999999999999999876544332221 1 4459999999 4 459999999999999876
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-29 Score=237.35 Aligned_cols=274 Identities=21% Similarity=0.337 Sum_probs=228.7
Q ss_pred EeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCC
Q 008820 247 DLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF 324 (552)
Q Consensus 247 ~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 324 (552)
++..|++.|.++.++ ...++++-.+|.|.|||.++...++++....-+|.+..|.+ ..+.+++|+.|..|++|+.++
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee-ccceEEEecCCceEEEEeccc
Confidence 456699999999999 89999999999999999999999999999999999999988 455889999999999999998
Q ss_pred CCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCC-ceeEEecCCCCCeEEEEEe---CCEEEEEeC
Q 008820 325 PLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDG-TLSCTMSGHKSAVSTLAVC---NGVLYSGSR 400 (552)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~---~~~l~s~~~ 400 (552)
......+ ..|.+. ....+++|..-+++++|.|-+|++||.+.. .+.+++.+|...|.+++|+ ++.++++|.
T Consensus 87 ~ekV~~F---eAH~Dy--IR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 87 GEKVKTF---EAHSDY--IRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred ceeeEEe---eccccc--eeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 7655444 444432 234567777779999999999999999754 6888999999999999999 349999999
Q ss_pred CCcEEEEECCCCceeEEEecCCCCceEEEEEEcC--CCCEEEEEECCCcEEEEeC--CcceeeeecccceEEEEEe--cC
Q 008820 401 DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA--VQHTLVVSHESGSIKVWRN--DKFMKSMQTHKGSVFAVFL--EG 474 (552)
Q Consensus 401 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~g~~dg~i~iwd~--~~~~~~~~~h~~~v~~v~~--~~ 474 (552)
|++|++|.+.+..+..++.+|..+ +.++ .+-+ |..+|++|+.|.+|+|||. .++++++.+|...|..+.| .-
T Consensus 162 DrTVKVWslgs~~~nfTl~gHekG-VN~V-dyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~l 239 (794)
T KOG0276|consen 162 DRTVKVWSLGSPHPNFTLEGHEKG-VNCV-DYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPEL 239 (794)
T ss_pred cccEEEEEcCCCCCceeeeccccC-cceE-EeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCC
Confidence 999999999999999999988654 4554 4433 4469999999999999995 4699999999999999988 55
Q ss_pred CEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEe--CCeEEEEeCCCeEEE
Q 008820 475 KWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW--QGKLFVGCADRTVKI 533 (552)
Q Consensus 475 ~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~Dg~v~i 533 (552)
..++|||+||+++||+..+-++...+... ...+.+++.. ++.+++|...|.|.+
T Consensus 240 piiisgsEDGTvriWhs~Ty~lE~tLn~g-----leRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 240 PIIISGSEDGTVRIWNSKTYKLEKTLNYG-----LERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cEEEEecCCccEEEecCcceehhhhhhcC-----CceEEEEeecCCCCeEEEeccCCcEEE
Confidence 68999999999999999887665554432 5668888876 455777777776654
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=210.96 Aligned_cols=268 Identities=17% Similarity=0.252 Sum_probs=209.8
Q ss_pred EEEEEc---CCEEEEEe-------CCCcEEEEeCCCCeEEEEEe--CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC
Q 008820 256 TGLAVG---GGFLFSSS-------FDKSIHVWSLKDFSHVHTFK--GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (552)
Q Consensus 256 ~~l~~s---~~~l~s~s-------~dg~I~iwd~~~~~~~~~~~--~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (552)
.++.|+ .++|+.+. ..|++.|-++..++-+..+. .-.+.+..++|+++.++.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 356666 44444432 36889999986555444433 2467899999999999999999999999999954
Q ss_pred CCCCCccccccccCCCceeeeEEEEeeC---CCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe---CCEEEE
Q 008820 324 FPLGHEPLKKWNEEKDWRYSGIHALTTS---GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLYS 397 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s 397 (552)
....++..+..|.. .+.++.++ +..++++|.|++|++|+...++.+.++.+|..-|....|+ ++.+++
T Consensus 92 --~~s~Pi~~~kEH~~----EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas 165 (311)
T KOG0277|consen 92 --MPSKPIHKFKEHKR----EVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFAS 165 (311)
T ss_pred --CCCcchhHHHhhhh----heEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEE
Confidence 34457777776654 34455543 4478888999999999999999999999999999999999 679999
Q ss_pred EeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEc-CCCCEEEEEECCCcEEEEeCC---cceeeeecccceEEEEEe-
Q 008820 398 GSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLT-AVQHTLVVSHESGSIKVWRND---KFMKSMQTHKGSVFAVFL- 472 (552)
Q Consensus 398 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~~g~~dg~i~iwd~~---~~~~~~~~h~~~v~~v~~- 472 (552)
+|.|+++++||++.......+..|. ..+.+ +.|+ .+.+.+++|+.|+.|++||++ .++..+.+|.-.|..+.+
T Consensus 166 ~Sgd~~l~lwdvr~~gk~~~i~ah~-~Eil~-cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~S 243 (311)
T KOG0277|consen 166 ASGDGTLRLWDVRSPGKFMSIEAHN-SEILC-CDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFS 243 (311)
T ss_pred ccCCceEEEEEecCCCceeEEEecc-ceeEe-ecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecC
Confidence 9999999999998755444477664 34444 3555 467889999999999999965 578889999999999987
Q ss_pred --cCCEEEEEeCCCeEEEEecCCCe-eeeeeccCCCcccCcceEEEEEe---CCeEEEEeCCCeEEEEEe
Q 008820 473 --EGKWLFTGGWDKTVSVQELAGDE-FEEDVIPTGAIPCGSVITALLYW---QGKLFVGCADRTVKIALC 536 (552)
Q Consensus 473 --~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~Dg~v~iw~~ 536 (552)
....|++++.|-+++|||...+. ......+ |...+..+.|+ ++.+++++.|+.++||+.
T Consensus 244 ph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~-----HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 244 PHHASLLASASYDMTVRIWDPERQDSAIETVDH-----HTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cchhhHhhhccccceEEecccccchhhhhhhhc-----cceEEeccccccccCceeeecccccceeeecc
Confidence 56789999999999999998443 2223222 25568888888 578999999999999984
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-28 Score=245.49 Aligned_cols=267 Identities=23% Similarity=0.373 Sum_probs=224.2
Q ss_pred ccccceeeecCcceEEEeeCCCeEEEEEe-----------ecCccceEEEEEc--CCEEEEEeCCCcEEEEeC-CCCeEE
Q 008820 220 ADIDQARAAGGVKDLVNGLSKGNVKFKDL-----------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSL-KDFSHV 285 (552)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~-~~~~~~ 285 (552)
..+....++..++.+++...++.+.+|.. .+|...|++++|+ ++++++++.|++|+|||+ ..+..+
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~ 239 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNL 239 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEE
Confidence 34666888888888888888888887765 6899999999999 889999999999999999 566899
Q ss_pred EEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEE
Q 008820 286 HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365 (552)
Q Consensus 286 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~ 365 (552)
+++++|...|++++|+|++ +++++|+.|++|++||+++++.. ..+..+.. .....+|++++++|++++.|+.|+
T Consensus 240 ~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~---~~l~~hs~--~is~~~f~~d~~~l~s~s~d~~i~ 313 (456)
T KOG0266|consen 240 KTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECV---RKLKGHSD--GISGLAFSPDGNLLVSASYDGTIR 313 (456)
T ss_pred EEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEE---EeeeccCC--ceEEEEECCCCCEEEEcCCCccEE
Confidence 9999999999999999988 79999999999999999985443 44444443 233458899999999999999999
Q ss_pred EEECCCCc--eeEEecCCCCC--eEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCc-eEEEEEEcCCCCE
Q 008820 366 AWSLLDGT--LSCTMSGHKSA--VSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGA-VSSVLSLTAVQHT 438 (552)
Q Consensus 366 iwd~~~~~--~~~~~~~h~~~--v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~ 438 (552)
+||+.++. +...+.++... ++++.|+ +.++++++.|+.+++||++.+.....+..+.... .......++.+.+
T Consensus 314 vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (456)
T KOG0266|consen 314 VWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKL 393 (456)
T ss_pred EEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCe
Confidence 99999999 66777776665 9999998 3499999999999999999999999998886652 1111234778999
Q ss_pred EEEEECCCcEEEEeCC--cceeeeecc-cceEEEEEe--cCCEEEEEe--CCCeEEEEecC
Q 008820 439 LVVSHESGSIKVWRND--KFMKSMQTH-KGSVFAVFL--EGKWLFTGG--WDKTVSVQELA 492 (552)
Q Consensus 439 l~~g~~dg~i~iwd~~--~~~~~~~~h-~~~v~~v~~--~~~~l~sgs--~dg~i~iwd~~ 492 (552)
+++|+.|+.|++||.. ..+..+.+| ...+..+.+ ...++++++ .|+.+++|..+
T Consensus 394 i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 394 IYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999999999999965 467788899 788777765 788999888 78999999764
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=230.68 Aligned_cols=318 Identities=21% Similarity=0.339 Sum_probs=253.5
Q ss_pred ccccceeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008820 220 ADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF 288 (552)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~ 288 (552)
+.+.....+++...++.|..+|.+++|+ +.||..+|+++.|+ |..|+|||.|+.|.+||+-...-...+
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL 145 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRL 145 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEe
Confidence 3466666677777889999999999887 56899999999999 999999999999999999988888999
Q ss_pred eCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEE
Q 008820 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWS 368 (552)
Q Consensus 289 ~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd 368 (552)
.||.+.|+..-|.. +..++++.+.|+.|++||+++.. ++.+...+. ..+.++..+++.+++++.|+.+++|+
T Consensus 146 ~GHkd~iT~~~F~~-~~~~lvS~sKDs~iK~WdL~tqh---Cf~Thvd~r----~Eiw~l~~~~~~lvt~~~dse~~v~~ 217 (888)
T KOG0306|consen 146 RGHKDSITQALFLN-GDSFLVSVSKDSMIKFWDLETQH---CFETHVDHR----GEIWALVLDEKLLVTAGTDSELKVWE 217 (888)
T ss_pred ecchHHHhHHhccC-CCeEEEEeccCceEEEEecccce---eeeEEeccc----ceEEEEEEecceEEEEecCCceEEEE
Confidence 99999999998876 56799999999999999998653 334433332 34667777778899999999999998
Q ss_pred CCCC----------------------------------------------------------------------------
Q 008820 369 LLDG---------------------------------------------------------------------------- 372 (552)
Q Consensus 369 ~~~~---------------------------------------------------------------------------- 372 (552)
+...
T Consensus 218 L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~ 297 (888)
T KOG0306|consen 218 LAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETE 297 (888)
T ss_pred eecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccc
Confidence 8100
Q ss_pred ------------------------------------ce------------------------------eEEecCCCCCeE
Q 008820 373 ------------------------------------TL------------------------------SCTMSGHKSAVS 386 (552)
Q Consensus 373 ------------------------------------~~------------------------------~~~~~~h~~~v~ 386 (552)
.. -..+.+|...|.
T Consensus 298 e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVR 377 (888)
T KOG0306|consen 298 ENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVR 377 (888)
T ss_pred ccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhhee
Confidence 00 012347888999
Q ss_pred EEEEe-CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecc
Q 008820 387 TLAVC-NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTH 463 (552)
Q Consensus 387 ~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h 463 (552)
+++++ ++.++..+..+.+++|+..+.+++.++... ...+..|-|.++++++|...|.+.+||+. ..+.+.+.|
T Consensus 378 sl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AH 453 (888)
T KOG0306|consen 378 SLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG----YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAH 453 (888)
T ss_pred EEEeecCceeeeecCCCcEEEEEccCcceeEEeccc----cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcc
Confidence 99999 556666667889999999999999999743 33336899999999999999999999954 567788899
Q ss_pred cceEEEEE--ecCCEEEEEeCCCeEEEEecCC-----Ce--eeeeeccCCCcccCcceEEEEEeCC--eEEEEeCCCeEE
Q 008820 464 KGSVFAVF--LEGKWLFTGGWDKTVSVQELAG-----DE--FEEDVIPTGAIPCGSVITALLYWQG--KLFVGCADRTVK 532 (552)
Q Consensus 464 ~~~v~~v~--~~~~~l~sgs~dg~i~iwd~~~-----~~--~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~Dg~v~ 532 (552)
.+.+++++ +|+..+++||.|.+|++||..- +. ......+...+.-...|.++.++|+ .|+++--|.+|+
T Consensus 454 dgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVk 533 (888)
T KOG0306|consen 454 DGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVK 533 (888)
T ss_pred ccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEE
Confidence 99999887 4999999999999999999741 11 1112222233344667999999964 377888999999
Q ss_pred EEEecCCcceeEEEeccc
Q 008820 533 IALCNRQIPEIFSLLLHI 550 (552)
Q Consensus 533 iw~~~~~~~~~~~~~gh~ 550 (552)
||-++ +.+-..++.||+
T Consensus 534 VyflD-tlKFflsLYGHk 550 (888)
T KOG0306|consen 534 VYFLD-TLKFFLSLYGHK 550 (888)
T ss_pred EEEec-ceeeeeeecccc
Confidence 99998 777788999996
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-28 Score=204.70 Aligned_cols=262 Identities=18% Similarity=0.253 Sum_probs=216.2
Q ss_pred ccccceeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008820 220 ADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF 288 (552)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~ 288 (552)
..+..+.+...++..++...+..+++|+ +.||...|..++.+ +..+++|+.|..|.+||+++|+.++.+
T Consensus 18 gaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~ 97 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF 97 (307)
T ss_pred cceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec
Confidence 3477888999999999999999988886 67999999999887 889999999999999999999999999
Q ss_pred eCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEE
Q 008820 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWS 368 (552)
Q Consensus 289 ~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd 368 (552)
.+|.+.|+.+.|+. ....+++|+.|.++++||.++.. ..+++.+....+ .+.++...+..|++|+.||+++.||
T Consensus 98 rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s-~ePiQildea~D----~V~Si~v~~heIvaGS~DGtvRtyd 171 (307)
T KOG0316|consen 98 RGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRS-FEPIQILDEAKD----GVSSIDVAEHEIVAGSVDGTVRTYD 171 (307)
T ss_pred ccccceeeEEEecC-cceEEEeccccceeEEEEcccCC-CCccchhhhhcC----ceeEEEecccEEEeeccCCcEEEEE
Confidence 99999999999976 55689999999999999998643 345555544333 4667788888999999999999999
Q ss_pred CCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCC
Q 008820 369 LLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG 446 (552)
Q Consensus 369 ~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 446 (552)
++.|+....+.+ .+|+|++|+ ++..+.++.|+++++.|-.+|+.+..+++|.......-++++.....+++|++||
T Consensus 172 iR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG 249 (307)
T KOG0316|consen 172 IRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDG 249 (307)
T ss_pred eecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCc
Confidence 999988776654 579999999 4588999999999999999999999999887665555567888889999999999
Q ss_pred cEEEEeCC--cceeeeecccce-EEEEEe--cCCEEEEEeCCCeEEEEe
Q 008820 447 SIKVWRND--KFMKSMQTHKGS-VFAVFL--EGKWLFTGGWDKTVSVQE 490 (552)
Q Consensus 447 ~i~iwd~~--~~~~~~~~h~~~-v~~v~~--~~~~l~sgs~dg~i~iwd 490 (552)
.|++||+- ..+..+..|... +.++++ .-..++++. ++.+.+|-
T Consensus 250 ~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 250 KVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred eEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceecee
Confidence 99999964 455666667666 667765 333444444 34556664
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=220.81 Aligned_cols=242 Identities=21% Similarity=0.327 Sum_probs=200.2
Q ss_pred CeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCC
Q 008820 282 FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD 361 (552)
Q Consensus 282 ~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d 361 (552)
.+..+.+++|.+.|.++++-|. +.+|++|+.|++|+|||+.+++....+.. +.. ...-.++++...++++++.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltG---hi~--~vr~vavS~rHpYlFs~ged 214 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTG---HIE--TVRGVAVSKRHPYLFSAGED 214 (460)
T ss_pred ceehhhhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecc---hhh--eeeeeeecccCceEEEecCC
Confidence 3556778899999999999885 56889999999999999998765444332 211 11123566666699999999
Q ss_pred CcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEE
Q 008820 362 RTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTL 439 (552)
Q Consensus 362 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 439 (552)
+.|+.||++..+.++.+.+|-+.|.|++.+ .+.|++|+.|.++|+||+++...+..+.+|. ..+..+ .+.|-...+
T Consensus 215 k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~-~~V~~V-~~~~~dpqv 292 (460)
T KOG0285|consen 215 KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT-NPVASV-MCQPTDPQV 292 (460)
T ss_pred CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCC-CcceeE-EeecCCCce
Confidence 999999999999999999999999999999 5699999999999999999999999999874 556664 566666789
Q ss_pred EEEECCCcEEEEeCC--cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEE
Q 008820 440 VVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITAL 515 (552)
Q Consensus 440 ~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l 515 (552)
++|+.|++|++||++ +...++..|...|.++.. ....+++++.| .|+.|++..+.....+..+ ...|+++
T Consensus 293 it~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh-----~~iintl 366 (460)
T KOG0285|consen 293 ITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGH-----NAIINTL 366 (460)
T ss_pred EEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccc-----cceeeee
Confidence 999999999999964 567788889999988875 67788888876 6999999988776653332 6678899
Q ss_pred EEe-CCeEEEEeCCCeEEEEEec
Q 008820 516 LYW-QGKLFVGCADRTVKIALCN 537 (552)
Q Consensus 516 ~~~-~~~l~s~s~Dg~v~iw~~~ 537 (552)
+.+ ++.+++|+..|.+.+||.+
T Consensus 367 ~~nsD~v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 367 SVNSDGVLVSGGDNGSIMFWDWK 389 (460)
T ss_pred eeccCceEEEcCCceEEEEEecC
Confidence 887 6889999999999999997
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-26 Score=216.82 Aligned_cols=313 Identities=16% Similarity=0.214 Sum_probs=251.1
Q ss_pred cCCCCCCCccccceeeecCcceEEEeeCCCeEEEEEe-----------ecCccceEEEEEc--CCEEEEEeC--CCcEEE
Q 008820 212 LGAENSDGADIDQARAAGGVKDLVNGLSKGNVKFKDL-----------QGHRDCVTGLAVG--GGFLFSSSF--DKSIHV 276 (552)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~H~~~V~~l~~s--~~~l~s~s~--dg~I~i 276 (552)
......++..+..+.+++.+..++++...|++++|.- +--.++|..++|+ +++++..+. ++-.++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence 3344555667888999999999999999999999973 3346899999999 666666543 333444
Q ss_pred EeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcccc-ccccCCCceeeeEEEEeeCCCEE
Q 008820 277 WSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLK-KWNEEKDWRYSGIHALTTSGRYL 355 (552)
Q Consensus 277 wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 355 (552)
+-.++|..+-.+.||...|+++.|-|..+..+++|+.|++|.+|+=.. ..++ .+..|.. ......++|||+.+
T Consensus 132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP----FKFk~s~r~Hsk--FV~~VRysPDG~~F 205 (603)
T KOG0318|consen 132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP----FKFKSSFREHSK--FVNCVRYSPDGSRF 205 (603)
T ss_pred EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC----eeeeeccccccc--ceeeEEECCCCCeE
Confidence 444588889999999999999999999999999999999999997431 1111 2222222 23456889999999
Q ss_pred EEeeCCCcEEEEECCCCceeEEec---CCCCCeEEEEEe-CC-EEEEEeCCCcEEEEECCCCceeEEEecCCC--CceEE
Q 008820 356 YTGSGDRTIKAWSLLDGTLSCTMS---GHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSS--GAVSS 428 (552)
Q Consensus 356 ~sgs~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~ 428 (552)
++++.||++.+||-.+++.+..+. +|++.|.+++|+ ++ .+++++.|.+++|||+.+.+++.++..... .....
T Consensus 206 at~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG 285 (603)
T KOG0318|consen 206 ATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVG 285 (603)
T ss_pred EEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEE
Confidence 999999999999999999999997 899999999999 43 999999999999999999999999876644 33333
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCC
Q 008820 429 VLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTG 504 (552)
Q Consensus 429 ~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~ 504 (552)
+ -|. ...|++-+.+|+|.+++.. ...+.+.+|...|+++.. ++++|++|+.||.|.-||..++........
T Consensus 286 ~-lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~-- 360 (603)
T KOG0318|consen 286 C-LWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGK-- 360 (603)
T ss_pred E-EEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccc--
Confidence 2 233 5678899999999999854 478899999999999875 899999999999999999988754333211
Q ss_pred CcccCcceEEEEEeC-CeEEEEeCCCeEEEEEec
Q 008820 505 AIPCGSVITALLYWQ-GKLFVGCADRTVKIALCN 537 (552)
Q Consensus 505 ~~~~~~~v~~l~~~~-~~l~s~s~Dg~v~iw~~~ 537 (552)
.+...|..++.+. +.+++.+.|.++++.++.
T Consensus 361 --~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~ 392 (603)
T KOG0318|consen 361 --GHTNQIKGMAASESGELFTIGWDDTLRVISLK 392 (603)
T ss_pred --cccceEEEEeecCCCcEEEEecCCeEEEEecc
Confidence 2367799999886 889999999999999875
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=210.75 Aligned_cols=277 Identities=20% Similarity=0.263 Sum_probs=226.4
Q ss_pred EeecCccceEEEEEc-----CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEe
Q 008820 247 DLQGHRDCVTGLAVG-----GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (552)
Q Consensus 247 ~l~~H~~~V~~l~~s-----~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 321 (552)
.-.||..+|-.++|+ |-+|++++.|+.=.+-+-++|.-+.+|.+|.+.|.+..... +....++++.|=+-++||
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~-na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNK-NATRAASAAADFTAKVWD 87 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCc-hhhhhhhhcccchhhhhh
Confidence 457999999999999 88999999999999989999999999999999999988755 445678999999999999
Q ss_pred CCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCc-eeEEecCCCCCeEEEEEe--CCEEEEE
Q 008820 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT-LSCTMSGHKSAVSTLAVC--NGVLYSG 398 (552)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~--~~~l~s~ 398 (552)
.-++.....+.. .+.....+|+.|.++|++|+.+..+++||++..+ +...+.+|.+.|..+.|. ++.++++
T Consensus 88 a~tgdelhsf~h------khivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 88 AVTGDELHSFEH------KHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhhhhhh------hheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence 887754443322 1445567899999999999999999999998654 566889999999999998 6699999
Q ss_pred eCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeeecccc-eEEEEEecCC
Q 008820 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKG-SVFAVFLEGK 475 (552)
Q Consensus 399 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~h~~-~v~~v~~~~~ 475 (552)
+.|++||+||.++++.++++...+. +.+ +.++++|++|.++ ..+.|.+||... .++.++.... .-.++.|+..
T Consensus 162 add~tVRLWD~rTgt~v~sL~~~s~--VtS-lEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~ 237 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLEFNSP--VTS-LEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKE 237 (334)
T ss_pred ccCCceEEEEeccCcEEEEEecCCC--Ccc-eeeccCCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCCc
Confidence 9999999999999999999987543 444 6899999877665 456899999664 4444443221 2234567889
Q ss_pred EEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCe--EEEEeCCCeEEEEEecC
Q 008820 476 WLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK--LFVGCADRTVKIALCNR 538 (552)
Q Consensus 476 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~s~s~Dg~v~iw~~~~ 538 (552)
.+++|++|..++.||..+++...... ..+.++|.++.|+|+. .++||.||+|++|....
T Consensus 238 ~fVaGged~~~~kfDy~TgeEi~~~n----kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 238 FFVAGGEDFKVYKFDYNTGEEIGSYN----KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred eEEecCcceEEEEEeccCCceeeecc----cCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 99999999999999999987766531 2237789999999754 78899999999999874
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-28 Score=221.67 Aligned_cols=269 Identities=16% Similarity=0.280 Sum_probs=222.3
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEE------------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCe
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKD------------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS 283 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~ 283 (552)
+...+.-..++.+++.+++++.+.+..+|. +.||..+|..+.|+ .++|++|+.|..+++||+.+|.
T Consensus 223 htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd 302 (519)
T KOG0293|consen 223 HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD 302 (519)
T ss_pred CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcch
Confidence 344577888899999999999888877765 67999999999999 8999999999999999999999
Q ss_pred EEEEEe-CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCC
Q 008820 284 HVHTFK-GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR 362 (552)
Q Consensus 284 ~~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg 362 (552)
....+. +|...+.+++|.|++. .+++|+.|+++..||++.. ....|..... ......++++||+++++.+.|.
T Consensus 303 ~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn----~~~~W~gvr~-~~v~dlait~Dgk~vl~v~~d~ 376 (519)
T KOG0293|consen 303 LRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGN----ILGNWEGVRD-PKVHDLAITYDGKYVLLVTVDK 376 (519)
T ss_pred hhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcc----hhhccccccc-ceeEEEEEcCCCcEEEEEeccc
Confidence 988775 3568899999999877 4699999999999999843 2444444333 2223457889999999999999
Q ss_pred cEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEc-CCCCEE
Q 008820 363 TIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLT-AVQHTL 439 (552)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l 439 (552)
.|++++.++......+. ...+|+++..+ ++ ++++.-.+..+++||+...+.+..+.++..+...-..+|. .+..++
T Consensus 377 ~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fi 455 (519)
T KOG0293|consen 377 KIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFI 455 (519)
T ss_pred ceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceE
Confidence 99999998766654444 45679999999 44 7778889999999999988888888888766655444554 345899
Q ss_pred EEEECCCcEEEEe--CCcceeeeecccceEEEEEe---cCCEEEEEeCCCeEEEEecCC
Q 008820 440 VVSHESGSIKVWR--NDKFMKSMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQELAG 493 (552)
Q Consensus 440 ~~g~~dg~i~iwd--~~~~~~~~~~h~~~v~~v~~---~~~~l~sgs~dg~i~iwd~~~ 493 (552)
++|++|+.|+||+ .++++..+.||...|++++| +..++|++|.||+|+||....
T Consensus 456 aSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 456 ASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999999999 56789999999999999998 677999999999999998764
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-27 Score=229.34 Aligned_cols=329 Identities=22% Similarity=0.297 Sum_probs=244.6
Q ss_pred cCCCCCCCccccceeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCC
Q 008820 212 LGAENSDGADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK 280 (552)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~ 280 (552)
....+.+-..+....++..+.++++++.|+.+.+|+ |+||.+.|+..-|. .+++++.|.|+.|++||++
T Consensus 100 ~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~ 179 (888)
T KOG0306|consen 100 LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLE 179 (888)
T ss_pred eeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecc
Confidence 334444556688889999999999999999999998 58999999999998 7899999999999999999
Q ss_pred CCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCC--------------------------------
Q 008820 281 DFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH-------------------------------- 328 (552)
Q Consensus 281 ~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-------------------------------- 328 (552)
+..+..+.-.|.+.+.++++.+ .++++++.|+.+++|++......
T Consensus 180 tqhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~ 256 (888)
T KOG0306|consen 180 TQHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSD 256 (888)
T ss_pred cceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcc
Confidence 9999999999999999999976 58899999999999998210000
Q ss_pred --------------------------------------c-----------------ccccc------------cc-CC--
Q 008820 329 --------------------------------------E-----------------PLKKW------------NE-EK-- 338 (552)
Q Consensus 329 --------------------------------------~-----------------~~~~~------------~~-~~-- 338 (552)
. .+... .. +.
T Consensus 257 r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~ 336 (888)
T KOG0306|consen 257 RFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTEN 336 (888)
T ss_pred cEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcce
Confidence 0 00000 00 00
Q ss_pred ---------------------------------CceeeeEE--EEeeCCCEEEEeeCCCcEEEEECCCCcee--------
Q 008820 339 ---------------------------------DWRYSGIH--ALTTSGRYLYTGSGDRTIKAWSLLDGTLS-------- 375 (552)
Q Consensus 339 ---------------------------------~~~~~~~~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~~-------- 375 (552)
..+...+. +++.+...+++|+ .+.+++|+..+.+++
T Consensus 337 ~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~ 415 (888)
T KOG0306|consen 337 TLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYI 415 (888)
T ss_pred eEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccE
Confidence 00000011 2222222333332 345666666555444
Q ss_pred --------------------------------EEecCCCCCeEEEEEe-CC-EEEEEeCCCcEEEEECCC-----CceeE
Q 008820 376 --------------------------------CTMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLSD-----HSLLT 416 (552)
Q Consensus 376 --------------------------------~~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~~-----~~~~~ 416 (552)
.++++|.+.|.+++.+ ++ .+++||.|.+|++||..- +...+
T Consensus 416 l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k 495 (888)
T KOG0306|consen 416 LASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKK 495 (888)
T ss_pred EEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccce
Confidence 3445789999999998 44 999999999999999742 22211
Q ss_pred EEecCC------CCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEE--ecCCEEEEEeCCCeE
Q 008820 417 VLEEDS------SGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVF--LEGKWLFTGGWDKTV 486 (552)
Q Consensus 417 ~~~~~~------~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~--~~~~~l~sgs~dg~i 486 (552)
.+..++ ...+.+ +.+|||+++|+++--|++|++|-+. +..-.+.||.-||.|+. +|++.++|||.|.+|
T Consensus 496 ~lsl~~~rtLel~ddvL~-v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnV 574 (888)
T KOG0306|consen 496 VLSLKHTRTLELEDDVLC-VSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNV 574 (888)
T ss_pred eeeeccceEEeccccEEE-EEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCce
Confidence 122111 233444 6999999999999999999999655 45668889999999875 599999999999999
Q ss_pred EEEecCCCeeeeeeccCCCcccCcceEEEEEeCCe--EEEEeCCCeEEEEEecCCcceeEEEecccc
Q 008820 487 SVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK--LFVGCADRTVKIALCNRQIPEIFSLLLHIN 551 (552)
Q Consensus 487 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~s~s~Dg~v~iw~~~~~~~~~~~~~gh~~ 551 (552)
++|-++=+.+...+.. |...|.++.|-|.. ++++|.|+.|+-||-+ +...++.+.||.+
T Consensus 575 KiWGLdFGDCHKS~fA-----HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~-kFe~iq~L~~H~~ 635 (888)
T KOG0306|consen 575 KIWGLDFGDCHKSFFA-----HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGE-KFEEIQKLDGHHS 635 (888)
T ss_pred EEeccccchhhhhhhc-----ccCceeEEEEcccceeEEEecCcceEEeechh-hhhhheeeccchh
Confidence 9999987777665544 37779999999743 8999999999999988 7888999999863
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-28 Score=226.56 Aligned_cols=267 Identities=18% Similarity=0.278 Sum_probs=212.5
Q ss_pred CCccccceeeec-CcceEEEeeCCCeEEEEE----------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeE
Q 008820 218 DGADIDQARAAG-GVKDLVNGLSKGNVKFKD----------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSH 284 (552)
Q Consensus 218 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~ 284 (552)
+...+.++.+-+ .+..+++++.++.+.+|+ |.||..+|.+++|+ |..++|+|.|+.|++||+++|++
T Consensus 213 H~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~ 292 (503)
T KOG0282|consen 213 HTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQV 292 (503)
T ss_pred CccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceE
Confidence 334456666666 666777888888888886 57899999999999 99999999999999999999999
Q ss_pred EEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcE
Q 008820 285 VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTI 364 (552)
Q Consensus 285 ~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i 364 (552)
+..+. -...++++.|.|++.+++++|+.|+.|+.||+++++..+ .+..+-. ... -..|-+++..+++.+.|+++
T Consensus 293 ~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq---eYd~hLg-~i~-~i~F~~~g~rFissSDdks~ 366 (503)
T KOG0282|consen 293 LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ---EYDRHLG-AIL-DITFVDEGRRFISSSDDKSV 366 (503)
T ss_pred EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH---HHHhhhh-hee-eeEEccCCceEeeeccCccE
Confidence 99986 346789999999999999999999999999999876333 2222221 111 23566788899999999999
Q ss_pred EEEECCCCceeEEec-CCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCC---ceeEEEecCCCCceEEEEEEcCCCCE
Q 008820 365 KAWSLLDGTLSCTMS-GHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDH---SLLTVLEEDSSGAVSSVLSLTAVQHT 438 (552)
Q Consensus 365 ~iwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~ 438 (552)
++|+.+..-++.... .+.-...|+..+ ++.+++-+.|+.|.++.+... .....+.+|......+-+.|||||++
T Consensus 367 riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~ 446 (503)
T KOG0282|consen 367 RIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRT 446 (503)
T ss_pred EEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCe
Confidence 999998876665432 222234466666 559999999999999987543 23345566655555566899999999
Q ss_pred EEEEECCCcEEEEeCC--cceeeeecccceEEEEEe---cCCEEEEEeCCCeEEEEe
Q 008820 439 LVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQE 490 (552)
Q Consensus 439 l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~---~~~~l~sgs~dg~i~iwd 490 (552)
|++|+.||.+.+||.+ +.+..++.|..++..+.| ....+|+++.||.|++||
T Consensus 447 l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 447 LCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999965 578899999999999998 567899999999999996
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-27 Score=233.70 Aligned_cols=262 Identities=19% Similarity=0.310 Sum_probs=206.8
Q ss_pred cccceeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q 008820 221 DIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFK 289 (552)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 289 (552)
.+....|.+...-++++...|.+++|+ |.+|.++|+.++|+ +.+++||+.|.+|+||++++.+++.++.
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~ 90 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLL 90 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhc
Confidence 355667777788889999999999998 57899999999999 8999999999999999999999999999
Q ss_pred CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEEC
Q 008820 290 GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSL 369 (552)
Q Consensus 290 ~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~ 369 (552)
||-+.|..+.|++.-. .++++|.|.+|+||++.+.++ +....+|. |..-+..|+|..+.++++|-|.+|++||+
T Consensus 91 GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~---iavltGHn--HYVMcAqFhptEDlIVSaSLDQTVRVWDi 164 (1202)
T KOG0292|consen 91 GHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKC---IAVLTGHN--HYVMCAQFHPTEDLIVSASLDQTVRVWDI 164 (1202)
T ss_pred cccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCce---EEEEecCc--eEEEeeccCCccceEEEecccceEEEEee
Confidence 9999999999998555 789999999999999987654 44444444 55667789999999999999999999998
Q ss_pred CCC-----------------------------ceeEEecCCCCCeEEEEEeC--CEEEEEeCCCcEEEEECCCCc--eeE
Q 008820 370 LDG-----------------------------TLSCTMSGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHS--LLT 416 (552)
Q Consensus 370 ~~~-----------------------------~~~~~~~~h~~~v~~l~~~~--~~l~s~~~dg~i~iwd~~~~~--~~~ 416 (552)
..- -..+.+.||...|+-++|++ .++++|+.|..|++|.+...+ .+-
T Consensus 165 sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvD 244 (1202)
T KOG0292|consen 165 SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD 244 (1202)
T ss_pred cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeeh
Confidence 421 12235689999999999996 499999999999999987654 244
Q ss_pred EEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecccce--EEEEEecCCEEEEEeCCCeEEEEec
Q 008820 417 VLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGS--VFAVFLEGKWLFTGGWDKTVSVQEL 491 (552)
Q Consensus 417 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~--v~~v~~~~~~l~sgs~dg~i~iwd~ 491 (552)
+..+| .+.+.+ +-|+|..+++++.++|++|++||+. +.+++++..... +.+..|..+++++|- |+-+.+|.+
T Consensus 245 tcrgH-~nnVss-vlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkl 320 (1202)
T KOG0292|consen 245 TCRGH-YNNVSS-VLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKL 320 (1202)
T ss_pred hhhcc-cCCcce-EEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEE
Confidence 44555 455666 5789999999999999999999964 567777543333 333334555554443 444444444
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-28 Score=211.35 Aligned_cols=284 Identities=14% Similarity=0.241 Sum_probs=229.7
Q ss_pred EEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCC------------------CeEEEEEeCCCCCeEEEEEecCCC
Q 008820 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD------------------FSHVHTFKGHDHKVMAVVYVDEDQ 305 (552)
Q Consensus 246 ~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~------------------~~~~~~~~~h~~~v~~v~~~~~~~ 305 (552)
..+..|+.++++-+|+ |.+++||+.|.+|+|.|++. .-.++++..|.++|+++.|+|. +
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr-e 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR-E 184 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch-h
Confidence 3477899999999999 99999999999999999861 1346788899999999999995 5
Q ss_pred CEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEe---cCCC
Q 008820 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM---SGHK 382 (552)
Q Consensus 306 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~---~~h~ 382 (552)
.+|++|+.|++|+++|+......+.++.+.... .....+|+|.|.++++|....++++||+++.++...- ..|.
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~---~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTE---PVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccc---eeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 589999999999999998766666666555433 3345688999999999999999999999998876543 5699
Q ss_pred CCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--ccee
Q 008820 383 SAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMK 458 (552)
Q Consensus 383 ~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~ 458 (552)
+.|+++.++ +++.++++.||.|++||--+++++.++...|.+...+...|..+++++++.+.|..+++|.+. .++.
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence 999999999 458899999999999999999999999988888888888999999999999999999999954 5666
Q ss_pred eeeccc--ceE---EEEEe--cCCEEEEEeC-CCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCe--EEEEeCC
Q 008820 459 SMQTHK--GSV---FAVFL--EGKWLFTGGW-DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK--LFVGCAD 528 (552)
Q Consensus 459 ~~~~h~--~~v---~~v~~--~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~s~s~D 528 (552)
.+.+-. +.. +...| ...+++.-.+ .+.+.-||.++........ ..|.+.+..+..+|.. +++|+.|
T Consensus 342 ~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s----lgHn~a~R~i~HSP~~p~FmTcsdD 417 (430)
T KOG0640|consen 342 EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS----LGHNGAVRWIVHSPVEPAFMTCSDD 417 (430)
T ss_pred EEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc----cCCCCCceEEEeCCCCCceeeeccc
Confidence 665531 111 12234 4566666554 4789999999875544332 2247889999998754 9999999
Q ss_pred CeEEEEEec
Q 008820 529 RTVKIALCN 537 (552)
Q Consensus 529 g~v~iw~~~ 537 (552)
-..|+|--.
T Consensus 418 ~raRFWyrr 426 (430)
T KOG0640|consen 418 FRARFWYRR 426 (430)
T ss_pred ceeeeeeec
Confidence 999999754
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=209.82 Aligned_cols=254 Identities=23% Similarity=0.360 Sum_probs=199.7
Q ss_pred cceEEEeeCCCeEEEEE--------eecCccceEEEEEc-----CCEEEEEeCCCcEEEEeCCCCeE----EEEEeCCCC
Q 008820 231 VKDLVNGLSKGNVKFKD--------LQGHRDCVTGLAVG-----GGFLFSSSFDKSIHVWSLKDFSH----VHTFKGHDH 293 (552)
Q Consensus 231 ~~~~~~~~~~~~~~~~~--------l~~H~~~V~~l~~s-----~~~l~s~s~dg~I~iwd~~~~~~----~~~~~~h~~ 293 (552)
.+.++++..+|..++|+ +.||.++|.++++. ...|++++.|.++++|.++.+.. ++.-+||..
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~ 194 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKR 194 (423)
T ss_pred CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccccc
Confidence 67889999999999887 46799999999886 34699999999999999987654 333459999
Q ss_pred CeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCC----------------------CCccccccccCCCceeeeEEEEeeC
Q 008820 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPL----------------------GHEPLKKWNEEKDWRYSGIHALTTS 351 (552)
Q Consensus 294 ~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (552)
.|-+|...+++. .+++|+.|.+|++|+..... ...++..+.+| ..++.++-+.
T Consensus 195 ~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH----t~~Vs~V~w~ 269 (423)
T KOG0313|consen 195 SVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH----TEPVSSVVWS 269 (423)
T ss_pred ceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc----ccceeeEEEc
Confidence 999999888655 77999999999999943211 00111122222 2233344433
Q ss_pred -CCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCc---eeEEEecCCCCc
Q 008820 352 -GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHS---LLTVLEEDSSGA 425 (552)
Q Consensus 352 -~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~ 425 (552)
...+++++.|.+|+.||+.++..+.++.+ ...++|+.++ ..+|++|+.|..|++||.+++. ..+++.+| .+.
T Consensus 270 d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH-~nw 347 (423)
T KOG0313|consen 270 DATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH-KNW 347 (423)
T ss_pred CCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecc-hhh
Confidence 55899999999999999999999988874 5568999998 4599999999999999999864 34555555 456
Q ss_pred eEEEEEEcCC-CCEEEEEECCCcEEEEeCCc---ceeeeecccceEEEEEe-cCCEEEEEeCCCeEEEEecC
Q 008820 426 VSSVLSLTAV-QHTLVVSHESGSIKVWRNDK---FMKSMQTHKGSVFAVFL-EGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 426 ~~~~~~~s~~-~~~l~~g~~dg~i~iwd~~~---~~~~~~~h~~~v~~v~~-~~~~l~sgs~dg~i~iwd~~ 492 (552)
+.. +.++|. ..+|++|+.|+++++||.+. ++..+.+|...|.++.| ++..+++||.|++|+++.-.
T Consensus 348 Vss-vkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 348 VSS-VKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred hhh-eecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEeccc
Confidence 666 466665 56788999999999999774 67788999999999999 67799999999999998654
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=214.87 Aligned_cols=276 Identities=18% Similarity=0.273 Sum_probs=224.8
Q ss_pred cCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEE--------eCCCCCeEEEEEecCCCCEEEEEcCCCcEEE
Q 008820 250 GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF--------KGHDHKVMAVVYVDEDQPLCISGDSGGGIFV 319 (552)
Q Consensus 250 ~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~--------~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~v 319 (552)
|...-+.|..|+ |++|++|+.||-|.+||..+|+..+.+ --+..+|.|+.|+.+.+ ++++|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCcEEE
Confidence 445667889999 999999999999999999999876544 34788999999998665 7899999999999
Q ss_pred EeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEE
Q 008820 320 WSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYS 397 (552)
Q Consensus 320 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s 397 (552)
|.+.++.+...+.. .+. ....+..|+.|+..+++++.|.++++.-+.+|++++.+++|++.|+...|. ++.+++
T Consensus 290 Wri~tG~ClRrFdr---AHt-kGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iis 365 (508)
T KOG0275|consen 290 WRIETGQCLRRFDR---AHT-KGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIIS 365 (508)
T ss_pred EEEecchHHHHhhh---hhc-cCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEE
Confidence 99998865544432 222 122345778888899999999999999999999999999999999999999 349999
Q ss_pred EeCCCcEEEEECCCCceeEEEecCC-CCceEEEEEEcCCCCEEEEEECCCcEEEEeCC-cceeeeecc----cceEE-EE
Q 008820 398 GSRDGTIRLWSLSDHSLLTVLEEDS-SGAVSSVLSLTAVQHTLVVSHESGSIKVWRND-KFMKSMQTH----KGSVF-AV 470 (552)
Q Consensus 398 ~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~h----~~~v~-~v 470 (552)
++.||+|++|+..+.+++.+++... .-.+.+++-+..+...++++...++|+|.++. +.++.+..- ..-|. ++
T Consensus 366 aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 366 ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEe
Confidence 9999999999999999999987543 33455666777778899999999999999964 455665431 12343 45
Q ss_pred EecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEEeCCCeEEEEE
Q 008820 471 FLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGCADRTVKIAL 535 (552)
Q Consensus 471 ~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~Dg~v~iw~ 535 (552)
++.|.++++.++|+.++.|.+.++++......+ ...+..++.+| +.+++-+.||.+++|.
T Consensus 446 SpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh-----EkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 446 SPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH-----EKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCCcEEEEEccCcEEEEEEeecCceeeeeecc-----cccccccccCcccchhhhhcccchhhhcC
Confidence 679999999999999999999999887765543 44577788776 4599999999999996
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-27 Score=205.52 Aligned_cols=301 Identities=21% Similarity=0.345 Sum_probs=223.4
Q ss_pred ceEEEeeCCCeEE---EEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCC
Q 008820 232 KDLVNGLSKGNVK---FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQP 306 (552)
Q Consensus 232 ~~~~~~~~~~~~~---~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 306 (552)
.++++.+.++.+. ++.|.||.+.|+.++.. ...+.+++.|.+.+||.+++++|+.++.||.+.|++++|++.+ .
T Consensus 125 srivssFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~-~ 203 (481)
T KOG0300|consen 125 SRIVSSFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSG-L 203 (481)
T ss_pred chheeeecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecccc-c
Confidence 4456666677644 35689999999999987 6789999999999999999999999999999999999999854 5
Q ss_pred EEEEEcCCCcEEEEeCC----CCCCC--c------ccccccc---------CCC------------ceeeeEEE--EeeC
Q 008820 307 LCISGDSGGGIFVWSFS----FPLGH--E------PLKKWNE---------EKD------------WRYSGIHA--LTTS 351 (552)
Q Consensus 307 ~l~s~~~dg~i~vwd~~----~~~~~--~------~~~~~~~---------~~~------------~~~~~~~~--~~~~ 351 (552)
++++++.|++..||... .++.. . ....... ..+ .+...+.+ +-..
T Consensus 204 L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g 283 (481)
T KOG0300|consen 204 LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG 283 (481)
T ss_pred eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC
Confidence 88999999999999621 11100 0 0000000 000 01111112 2235
Q ss_pred CCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCC--EEEEEeCCCcEEEEECCCCc-eeEEEecCCCCceEE
Q 008820 352 GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNG--VLYSGSRDGTIRLWSLSDHS-LLTVLEEDSSGAVSS 428 (552)
Q Consensus 352 ~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~ 428 (552)
++.+++++.|.+-.+||+++++++..+.+|....+.++-++. ++++++.|.+.++||++..- .+..|.+|. ..+.+
T Consensus 284 g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt-dtVTS 362 (481)
T KOG0300|consen 284 GQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT-DTVTS 362 (481)
T ss_pred cceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc-cceeE
Confidence 779999999999999999999999999999999998888843 88999999999999998543 456666664 44555
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCc---ceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccC
Q 008820 429 VLSLTAVQHTLVVSHESGSIKVWRNDK---FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPT 503 (552)
Q Consensus 429 ~~~~s~~~~~l~~g~~dg~i~iwd~~~---~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~ 503 (552)
..|..+ ..+++|+.|.+|++||+++ ++.++.. ..+++.+.. .+..++.--.+..|++||+++.++..... .
T Consensus 363 -~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPr-t 438 (481)
T KOG0300|consen 363 -VVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPR-T 438 (481)
T ss_pred -EEEecC-CceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCc-c
Confidence 356554 4689999999999999765 4555543 455665554 45577777777899999999876654332 1
Q ss_pred CCcccCcceEEEEEeCCe----EEEEeCCCeEEEEEecC
Q 008820 504 GAIPCGSVITALLYWQGK----LFVGCADRTVKIALCNR 538 (552)
Q Consensus 504 ~~~~~~~~v~~l~~~~~~----l~s~s~Dg~v~iw~~~~ 538 (552)
....+...|++++|.+.. |++++.|..+.=|+++.
T Consensus 439 sRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 439 SRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred cccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 222346779999999543 99999999999999984
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=203.66 Aligned_cols=241 Identities=19% Similarity=0.331 Sum_probs=199.1
Q ss_pred EEEEEeecCccceEEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q 008820 243 VKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (552)
Q Consensus 243 ~~~~~l~~H~~~V~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 322 (552)
.+++.+..|.++|++++.++.++||||.|-+|+|||+.+...+..+-.|.+.|+++.|.++-.
T Consensus 34 ~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S----------------- 96 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLS----------------- 96 (362)
T ss_pred eccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcc-----------------
Confidence 357889999999999999999999999999999999999999999999999999999976421
Q ss_pred CCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeC
Q 008820 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSR 400 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~ 400 (552)
.+.|++|+.||.|.+|+.....++..+++|.+.|+.++.+ +.+.++.+.
T Consensus 97 -----------------------------~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~ 147 (362)
T KOG0294|consen 97 -----------------------------KSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGG 147 (362)
T ss_pred -----------------------------hhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcC
Confidence 1268999999999999999999999999999999999999 347789999
Q ss_pred CCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeeecccceEEEEEe-cCCEE
Q 008820 401 DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAVFL-EGKWL 477 (552)
Q Consensus 401 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~h~~~v~~v~~-~~~~l 477 (552)
|+.++.||+-+|+.-......+. ...+.|+|.|.+++.+..+ .|-+|.+.. ....+.. ...+.++.| ++..|
T Consensus 148 D~~lr~WNLV~Gr~a~v~~L~~~---at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l~~~~L 222 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAFVLNLKNK---ATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFLDGSEL 222 (362)
T ss_pred CceeeeehhhcCccceeeccCCc---ceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeecCCceE
Confidence 99999999999987777665433 2236899999999888776 588997653 2222222 255677777 89999
Q ss_pred EEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC----CeEEEEeCCCeEEEEEecCC
Q 008820 478 FTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ----GKLFVGCADRTVKIALCNRQ 539 (552)
Q Consensus 478 ~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~l~s~s~Dg~v~iw~~~~~ 539 (552)
++|+.|+.|.+||.++......+.. |...|-++.+-. .+|+++|+||.|++||++..
T Consensus 223 ~vG~d~~~i~~~D~ds~~~~~~~~A-----H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 223 LVGGDNEWISLKDTDSDTPLTEFLA-----HENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEecCCceEEEeccCCCccceeeec-----chhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 9999999999999998655554444 377788888553 25999999999999999854
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=223.47 Aligned_cols=273 Identities=25% Similarity=0.424 Sum_probs=220.5
Q ss_pred EEEeecCccceEEEEEc-CCEEEEEeCCCcEEEEeCCCCeEE--EEEeCCCCCeEE-EEEecCCCCEEEEEcCCCcEEEE
Q 008820 245 FKDLQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHV--HTFKGHDHKVMA-VVYVDEDQPLCISGDSGGGIFVW 320 (552)
Q Consensus 245 ~~~l~~H~~~V~~l~~s-~~~l~s~s~dg~I~iwd~~~~~~~--~~~~~h~~~v~~-v~~~~~~~~~l~s~~~dg~i~vw 320 (552)
-+.+.||..-|..+++. +..++++|.||++++|+-...+.+ ..+.+|.+-|.. +++.+.++..+++|+.|++|.+|
T Consensus 7 s~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF 86 (745)
T ss_pred EEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEE
Confidence 35689999999999988 788999999999999997655544 456778888877 88877566678999999999999
Q ss_pred eCCCCCCCccccccccCCCceeeeEEEEeeCCC-EEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CCEEEEE
Q 008820 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NGVLYSG 398 (552)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~ 398 (552)
...... ++..+.+|+ ..+++++.... .+++||.|.++++|- .+++...+.+|+..|.+++.- ++.++||
T Consensus 87 ~~~~~~---P~~~LkgH~----snVC~ls~~~~~~~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~~~vTg 157 (745)
T KOG0301|consen 87 KLSQAE---PLYTLKGHK----SNVCSLSIGEDGTLISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPENTYVTG 157 (745)
T ss_pred ecCCCC---chhhhhccc----cceeeeecCCcCceEecccccceEEec--chhhhcccCCcchheeeeeecCCCcEEec
Confidence 988654 444444433 34666764433 589999999999996 467777899999999999887 6699999
Q ss_pred eCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeC-CcceeeeecccceEEEEEe--cCC
Q 008820 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN-DKFMKSMQTHKGSVFAVFL--EGK 475 (552)
Q Consensus 399 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~-~~~~~~~~~h~~~v~~v~~--~~~ 475 (552)
|.|.+|++|.- ++.++++.+| ...+.. +++-+++ .+++++.||.|+.|++ +..+..+.+|++-+++++. ++.
T Consensus 158 saDKtIklWk~--~~~l~tf~gH-tD~VRg-L~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~ 232 (745)
T KOG0301|consen 158 SADKTIKLWKG--GTLLKTFSGH-TDCVRG-LAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDG 232 (745)
T ss_pred cCcceeeeccC--Cchhhhhccc-hhheee-eEEecCC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCC
Confidence 99999999974 7888999986 455555 4555543 5889999999999997 7889999999999999984 899
Q ss_pred EEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEe-CCeEEEEeCCCeEEEEEecC
Q 008820 476 WLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QGKLFVGCADRTVKIALCNR 538 (552)
Q Consensus 476 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~Dg~v~iw~~~~ 538 (552)
.++++++|++++||+.. .+.+.+... ...|.++.+- ++.+++|++||.||||..+.
T Consensus 233 ~Ivs~gEDrtlriW~~~--e~~q~I~lP-----ttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 233 LIVSTGEDRTLRIWKKD--ECVQVITLP-----TTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred eEEEecCCceEEEeecC--ceEEEEecC-----ccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 99999999999999987 454444443 3346666655 78899999999999999873
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=214.09 Aligned_cols=263 Identities=30% Similarity=0.475 Sum_probs=217.8
Q ss_pred ccccceeeecCcceEEEeeCCCeEEEEEe---------ecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008820 220 ADIDQARAAGGVKDLVNGLSKGNVKFKDL---------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF 288 (552)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~ 288 (552)
..+..+.+.+.+..++++..++.+.+|++ .+|...+..+.|+ ++++++++.||.|++||+.+++.+..+
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~ 89 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL 89 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE
Confidence 45777888888888888888888888864 5688899999998 679999999999999999998888999
Q ss_pred eCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEE
Q 008820 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWS 368 (552)
Q Consensus 289 ~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd 368 (552)
..|...+.++.|+++ ..++++++.|+.+++||+.+.+....+. .+.. ......+++++.++++++.|+.|++||
T Consensus 90 ~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~--~i~~~~~~~~~~~l~~~~~~~~i~i~d 163 (289)
T cd00200 90 TGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLR---GHTD--WVNSVAFSPDGTFVASSSQDGTIKLWD 163 (289)
T ss_pred eccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEec---cCCC--cEEEEEEcCcCCEEEEEcCCCcEEEEE
Confidence 999999999999987 4577888889999999998554333322 2211 123346677777888888899999999
Q ss_pred CCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCC
Q 008820 369 LLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG 446 (552)
Q Consensus 369 ~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 446 (552)
+++++.+..+..|...+.++.|+ ++ .+++++.|+.|++||+++++.+..+..+. ..+.. +.+++++.++++++.||
T Consensus 164 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~i~~-~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 164 LRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE-NGVNS-VAFSPDGYLLASGSEDG 241 (289)
T ss_pred ccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC-CceEE-EEEcCCCcEEEEEcCCC
Confidence 99999999999999999999999 33 89999999999999999988888775543 34444 68999988888888899
Q ss_pred cEEEEeCC--cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEe
Q 008820 447 SIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQE 490 (552)
Q Consensus 447 ~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd 490 (552)
.|++||.. +....+..|...+.++.+ ++.+|++++.||.+++|+
T Consensus 242 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999965 566777889999999887 668999999999999996
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-27 Score=200.54 Aligned_cols=235 Identities=19% Similarity=0.326 Sum_probs=191.8
Q ss_pred cCccceEEEEEc---CCEEEEEeCCCcEEEEeCC-CCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCC
Q 008820 250 GHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLK-DFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFP 325 (552)
Q Consensus 250 ~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~-~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~ 325 (552)
.-.+.+..++|+ .+.+++++.||++++||+. ...+++.++.|...|.++.|++.....+++++.|++|++|+...+
T Consensus 58 d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~ 137 (311)
T KOG0277|consen 58 DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP 137 (311)
T ss_pred ecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC
Confidence 346789999998 7899999999999999964 346789999999999999999988888999999999999998755
Q ss_pred CCCccccccccCCCceeeeEEEEee-CCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe---CCEEEEEeCC
Q 008820 326 LGHEPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLYSGSRD 401 (552)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~d 401 (552)
+ .+.++.++...... ..++| .++.++++|.|+++++||++..-....+..|...+.|+.|+ ++.++||+.|
T Consensus 138 ~---Sv~Tf~gh~~~Iy~--a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd 212 (311)
T KOG0277|consen 138 N---SVQTFNGHNSCIYQ--AAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVD 212 (311)
T ss_pred c---ceEeecCCccEEEE--EecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCC
Confidence 4 44555555442222 24555 47799999999999999998654444588999999999998 5599999999
Q ss_pred CcEEEEECCCCc-eeEEEecCCCCceEEEEEEcCC-CCEEEEEECCCcEEEEeCC---cceeeeecccceEEEEEe---c
Q 008820 402 GTIRLWSLSDHS-LLTVLEEDSSGAVSSVLSLTAV-QHTLVVSHESGSIKVWRND---KFMKSMQTHKGSVFAVFL---E 473 (552)
Q Consensus 402 g~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iwd~~---~~~~~~~~h~~~v~~v~~---~ 473 (552)
+.|+.||+++.+ ++..+.+| .-.+.. +.+||. ...|++++.|-+++|||.. ..+.+...|+.-+..+.| +
T Consensus 213 ~~vr~wDir~~r~pl~eL~gh-~~AVRk-vk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~ 290 (311)
T KOG0277|consen 213 NLVRGWDIRNLRTPLFELNGH-GLAVRK-VKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFD 290 (311)
T ss_pred ceEEEEehhhccccceeecCC-ceEEEE-EecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccccccc
Confidence 999999999865 56666544 334444 578876 4688999999999999954 356777889999998887 8
Q ss_pred CCEEEEEeCCCeEEEEec
Q 008820 474 GKWLFTGGWDKTVSVQEL 491 (552)
Q Consensus 474 ~~~l~sgs~dg~i~iwd~ 491 (552)
+.++++.+.|+.++||+.
T Consensus 291 ~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 291 PGQVASTGWDELLYVWNP 308 (311)
T ss_pred Cceeeecccccceeeecc
Confidence 899999999999999984
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-26 Score=196.47 Aligned_cols=284 Identities=15% Similarity=0.198 Sum_probs=212.2
Q ss_pred EeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCC
Q 008820 247 DLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF 324 (552)
Q Consensus 247 ~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 324 (552)
-++||+.+++.+.|+ |++|.||+.|.+..||-..+|+.+-++.||++.|.++....+ ...+++|+.|.++++||+.+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~-s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWD-SKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCC-cceeeeccccceeEEEEcCC
Confidence 378999999999999 999999999999999999999999999999999999998664 45789999999999999998
Q ss_pred CCCCccccccccCCCceeeeEEEEeeCCCEEEEeeC-----CCcEEEEECC-------CCceeEEecCCCCCeEEEEEe-
Q 008820 325 PLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG-----DRTIKAWSLL-------DGTLSCTMSGHKSAVSTLAVC- 391 (552)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~-----dg~i~iwd~~-------~~~~~~~~~~h~~~v~~l~~~- 391 (552)
++.....+.. .......|+++|++++.... .+.|.++|++ ..++...+..+.+.++.+.|.
T Consensus 84 Gk~la~~k~~------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~ 157 (327)
T KOG0643|consen 84 GKQLATWKTN------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP 157 (327)
T ss_pred CcEEEEeecC------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc
Confidence 8655444332 22234578889997777654 4679999998 446788888889999999998
Q ss_pred -CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcc--eeeeecccceEE
Q 008820 392 -NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF--MKSMQTHKGSVF 468 (552)
Q Consensus 392 -~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~h~~~v~ 468 (552)
+..|++|..||.|.+||+++++.+..-...|...+.. +.++++..++++++.|.+-++||...+ ++++. -..+|+
T Consensus 158 l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind-~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN 235 (327)
T KOG0643|consen 158 LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKIND-LQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVN 235 (327)
T ss_pred cCCEEEEecCCCcEEEEEcccCceeeechhhhcccccc-ccccCCcceEEecccCccceeeeccceeeEEEee-eccccc
Confidence 6799999999999999999987655544444445555 799999999999999999999997753 44443 345666
Q ss_pred EEE--ecCCEEEEEe-CCC-eEEEEecCCCeeeeeecc-------CCCcccCcceEEEEEeCC-e-EEEEeCCCeEEEEE
Q 008820 469 AVF--LEGKWLFTGG-WDK-TVSVQELAGDEFEEDVIP-------TGAIPCGSVITALLYWQG-K-LFVGCADRTVKIAL 535 (552)
Q Consensus 469 ~v~--~~~~~l~sgs-~dg-~i~iwd~~~~~~~~~~~~-------~~~~~~~~~v~~l~~~~~-~-l~s~s~Dg~v~iw~ 535 (552)
+.+ |...+++.|+ .+- -|.-=+.+.++....+.+ ..-..|-++|++++|+|+ . .++|+.||.||+.-
T Consensus 236 ~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 236 TAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred ceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEE
Confidence 654 4444555444 331 122112222222111100 011124678999999974 3 88999999999998
Q ss_pred ecCC
Q 008820 536 CNRQ 539 (552)
Q Consensus 536 ~~~~ 539 (552)
++.+
T Consensus 316 Fd~~ 319 (327)
T KOG0643|consen 316 FDSN 319 (327)
T ss_pred eccc
Confidence 7743
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-25 Score=221.17 Aligned_cols=271 Identities=13% Similarity=0.189 Sum_probs=192.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEE-------------EEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCC
Q 008820 262 GGFLFSSSFDKSIHVWSLKDFSHV-------------HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328 (552)
Q Consensus 262 ~~~l~s~s~dg~I~iwd~~~~~~~-------------~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 328 (552)
+..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+|.++.+|++|+.|++|++||+......
T Consensus 32 ~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~ 111 (493)
T PTZ00421 32 CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLT 111 (493)
T ss_pred CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccc
Confidence 456666666666666765433222 2467899999999999966668999999999999999764321
Q ss_pred ----ccccccccCCCceeeeEEEEeeCC-CEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCC
Q 008820 329 ----EPLKKWNEEKDWRYSGIHALTTSG-RYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRD 401 (552)
Q Consensus 329 ----~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~d 401 (552)
..+..+..+.. .....+|+|++ ++|++|+.|++|++||+++++.+..+.+|...|.+++|+ +.+|++++.|
T Consensus 112 ~~~~~~l~~L~gH~~--~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~D 189 (493)
T PTZ00421 112 QNISDPIVHLQGHTK--KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD 189 (493)
T ss_pred cccCcceEEecCCCC--cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCC
Confidence 22333444332 22345677765 699999999999999999999999999999999999999 3489999999
Q ss_pred CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEE----CCCcEEEEeCCcc---eeeeecccc-eEEEEE--
Q 008820 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH----ESGSIKVWRNDKF---MKSMQTHKG-SVFAVF-- 471 (552)
Q Consensus 402 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~----~dg~i~iwd~~~~---~~~~~~h~~-~v~~v~-- 471 (552)
++|++||+++++.+..+..+....... +.|.+++..+++++ .|+.|++||+++. ......+.. .+....
T Consensus 190 g~IrIwD~rsg~~v~tl~~H~~~~~~~-~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d 268 (493)
T PTZ00421 190 KKLNIIDPRDGTIVSSVEAHASAKSQR-CLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFD 268 (493)
T ss_pred CEEEEEECCCCcEEEEEecCCCCcceE-EEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEc
Confidence 999999999999988887764333333 46777777777654 4789999998753 333333332 333333
Q ss_pred ecCCEEEEEe-CCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEecCC
Q 008820 472 LEGKWLFTGG-WDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCNRQ 539 (552)
Q Consensus 472 ~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~~~ 539 (552)
+++++|++++ .|+.|++||+.++........ ....++..+++.|.+.+-...--..|++.+..+
T Consensus 269 ~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~----~s~~~~~g~~~~pk~~~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 269 EDTNLLYIGSKGEGNIRCFELMNERLTFCSSY----SSVEPHKGLCMMPKWSLDTRKCEIARFYALTYH 333 (493)
T ss_pred CCCCEEEEEEeCCCeEEEEEeeCCceEEEeec----cCCCCCcceEecccccccccceeeeEEEEecCC
Confidence 3888888887 599999999998765544322 124457777787765443333334466666543
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-25 Score=221.75 Aligned_cols=248 Identities=11% Similarity=0.124 Sum_probs=183.8
Q ss_pred EeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCC-----ccccccccCCCcee
Q 008820 268 SSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH-----EPLKKWNEEKDWRY 342 (552)
Q Consensus 268 ~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~~ 342 (552)
|+.++.|++|+......+..+.+|.+.|.+++|+|....+|++|+.|++|++||+.+.... ..+..+..+.. .
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~--~ 127 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK--K 127 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC--c
Confidence 6678899999988888889999999999999999987779999999999999999864321 11122223322 2
Q ss_pred eeEEEEeeCCC-EEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEe
Q 008820 343 SGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLE 419 (552)
Q Consensus 343 ~~~~~~~~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 419 (552)
....+|+|++. .+++++.|++|++||+++++.+..+. |...|.+++|+ +.+|++++.|+.|++||+++++.+..+.
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 23457778776 46799999999999999998887776 66789999999 4488889999999999999999998888
Q ss_pred cCCCCceEEE---EEEcCCCCEEEEEECCC----cEEEEeCCc---ceeeeec--ccceEEEE-Ee-cCCEEEEEeCCCe
Q 008820 420 EDSSGAVSSV---LSLTAVQHTLVVSHESG----SIKVWRNDK---FMKSMQT--HKGSVFAV-FL-EGKWLFTGGWDKT 485 (552)
Q Consensus 420 ~~~~~~~~~~---~~~s~~~~~l~~g~~dg----~i~iwd~~~---~~~~~~~--h~~~v~~v-~~-~~~~l~sgs~dg~ 485 (552)
.|.......+ ..+++++.++++++.|+ .|+|||++. ++..+.. +.+.+... .. ++.++++|+.|++
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t 286 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN 286 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe
Confidence 7753322221 23568889999988774 799999764 4443332 22333222 22 5889999999999
Q ss_pred EEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCeE
Q 008820 486 VSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKL 522 (552)
Q Consensus 486 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l 522 (552)
|++|++..+.+... . ...+..++.+++|.|.+.
T Consensus 287 Ir~~e~~~~~~~~l-~---~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 287 CRYYQHSLGSIRKV-N---EYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEEEccCCcEEee-c---ccccCCCccceEEccccc
Confidence 99999987643222 1 122366788889988654
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-27 Score=201.00 Aligned_cols=258 Identities=19% Similarity=0.309 Sum_probs=210.9
Q ss_pred ecCcceEEEeeCCCeEEE---------EEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeE
Q 008820 228 AGGVKDLVNGLSKGNVKF---------KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVM 296 (552)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~---------~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~ 296 (552)
.+.+-.+++...++..-+ -+|.||.++|++...+ ....++++.|-+-+|||.-+|..+++|. |..-|.
T Consensus 26 tp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk 104 (334)
T KOG0278|consen 26 TPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVK 104 (334)
T ss_pred CCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheee
Confidence 456677777777766544 4599999999999998 6678899999999999999999999986 889999
Q ss_pred EEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeE
Q 008820 297 AVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSC 376 (552)
Q Consensus 297 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~ 376 (552)
+++|+.+.+ .|++|+.+..++++|++.+.. +...+.++.... ..+ -|....+.|++.+.|++|++||.+++..++
T Consensus 105 ~~af~~ds~-~lltgg~ekllrvfdln~p~A--pp~E~~ghtg~I-r~v-~wc~eD~~iLSSadd~tVRLWD~rTgt~v~ 179 (334)
T KOG0278|consen 105 AVAFSQDSN-YLLTGGQEKLLRVFDLNRPKA--PPKEISGHTGGI-RTV-LWCHEDKCILSSADDKTVRLWDHRTGTEVQ 179 (334)
T ss_pred eEEecccch-hhhccchHHHhhhhhccCCCC--CchhhcCCCCcc-eeE-EEeccCceEEeeccCCceEEEEeccCcEEE
Confidence 999988655 679999999999999986543 233333333322 222 344455678888999999999999999999
Q ss_pred EecCCCCCeEEEEEe-CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeC--
Q 008820 377 TMSGHKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN-- 453 (552)
Q Consensus 377 ~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~-- 453 (552)
++. ...+|+++.++ ++.+++-...+.|.+||..+...++.++.+. .+.+ .+++|+...+++|++|..++.||.
T Consensus 180 sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~--nV~S-ASL~P~k~~fVaGged~~~~kfDy~T 255 (334)
T KOG0278|consen 180 SLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPC--NVES-ASLHPKKEFFVAGGEDFKVYKFDYNT 255 (334)
T ss_pred EEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCcc--cccc-ccccCCCceEEecCcceEEEEEeccC
Confidence 987 56789999999 7889999999999999999999999888753 3444 588999999999999999999984
Q ss_pred Ccceeee-ecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCe
Q 008820 454 DKFMKSM-QTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDE 495 (552)
Q Consensus 454 ~~~~~~~-~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~ 495 (552)
+..+..+ ++|-++|.|+.| +|...++||.||+|++|.+.-++
T Consensus 256 geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 256 GEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred CceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 4455554 899999999987 99999999999999999986543
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-27 Score=212.86 Aligned_cols=276 Identities=18% Similarity=0.260 Sum_probs=222.0
Q ss_pred EEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCe--EEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 008820 245 FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS--HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (552)
Q Consensus 245 ~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vw 320 (552)
...+..|.+.|..+.|- ...|++|+.|..|++|+....+ .+.++.+..++|+++.|.+++. .+++++.|+.+++|
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~-~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNK-HVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCc-eEEeecCCCceeee
Confidence 45578999999999998 5899999999999999987766 6788889999999999988655 66888999999999
Q ss_pred eCCCCCCCccccccccCCCceeeeEEEE--eeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEE
Q 008820 321 SFSFPLGHEPLKKWNEEKDWRYSGIHAL--TTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSG 398 (552)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~ 398 (552)
+++.......+. +|.+ .+++. ......+++|+.|.+|++||+....+.+++. ..+.+..|...+..+++|
T Consensus 247 nvd~~r~~~TLs---GHtd----kVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~~~~~~Sg 318 (459)
T KOG0288|consen 247 NVDSLRLRHTLS---GHTD----KVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCSISDVISG 318 (459)
T ss_pred eccchhhhhhhc---cccc----ceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEecceeeeec
Confidence 999765444443 3333 22233 2333359999999999999999988887765 345677777777789999
Q ss_pred eCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeee------cccceEEEE
Q 008820 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQ------THKGSVFAV 470 (552)
Q Consensus 399 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~------~h~~~v~~v 470 (552)
..|++||+||.++..+......+ +.+.+ +..++++..+.+++.|.++.+.|++. ..+.+. +|.-.-..+
T Consensus 319 H~DkkvRfwD~Rs~~~~~sv~~g--g~vtS-l~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 319 HFDKKVRFWDIRSADKTRSVPLG--GRVTS-LDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVF 395 (459)
T ss_pred ccccceEEEeccCCceeeEeecC--cceee-EeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEE
Confidence 99999999999999999888775 44555 69999999999999999999999764 233332 233333455
Q ss_pred EecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEEeCCCeEEEEE
Q 008820 471 FLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGCADRTVKIAL 535 (552)
Q Consensus 471 ~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~Dg~v~iw~ 535 (552)
+|++.|+++||.||.|+||++.++++......... ...|++++|++ ..+++++.++.+.+|.
T Consensus 396 Spd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s---~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 396 SPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTS---NAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCCCceeeeccCCCcEEEEEccCceEEEEeccCCC---CcceEEEEEcCCCchhhcccCCcceEecC
Confidence 67999999999999999999999998877666543 44799999995 3499999999999994
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-27 Score=212.58 Aligned_cols=262 Identities=17% Similarity=0.299 Sum_probs=213.3
Q ss_pred CccccceeeecCcceEEEeeCCCeEEEEEee-----------cCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEE
Q 008820 219 GADIDQARAAGGVKDLVNGLSKGNVKFKDLQ-----------GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHV 285 (552)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~ 285 (552)
...+..+.+..+...+.++..+..+++|... |-.++|+++.|. ++++++++.|+.+++|++.+.+..
T Consensus 175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~ 254 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLR 254 (459)
T ss_pred ccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhh
Confidence 3456777888888889999999999988754 445679999998 999999999999999999999999
Q ss_pred EEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEE
Q 008820 286 HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365 (552)
Q Consensus 286 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~ 365 (552)
.++.+|++.|+++.|..... .+++|+.|.+|++||+....+.+.+.... .+..+...+..+++|..|+.|+
T Consensus 255 ~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~kt~l~~S--------~cnDI~~~~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 255 HTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSKTVLPGS--------QCNDIVCSISDVISGHFDKKVR 325 (459)
T ss_pred hhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhhheeccccccc--------cccceEecceeeeecccccceE
Confidence 99999999999999976444 38999999999999998754443332221 1222333356789999999999
Q ss_pred EEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeCCCcEEEEECCCCceeEEEecCC--CCceEEEEEEcCCCCEEEE
Q 008820 366 AWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDS--SGAVSSVLSLTAVQHTLVV 441 (552)
Q Consensus 366 iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~l~~ 441 (552)
+||.++..+......+. .|+++..+ ++ .+++++.|.++.+.|+++.+..+.+.... .+.-.+...|||++.|+++
T Consensus 326 fwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaA 404 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAA 404 (459)
T ss_pred EEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeee
Confidence 99999999999998766 89999998 44 88888999999999999999888876532 1222334689999999999
Q ss_pred EECCCcEEEEeC--Ccceeeeecccc--eEEEEEe--cCCEEEEEeCCCeEEEEe
Q 008820 442 SHESGSIKVWRN--DKFMKSMQTHKG--SVFAVFL--EGKWLFTGGWDKTVSVQE 490 (552)
Q Consensus 442 g~~dg~i~iwd~--~~~~~~~~~h~~--~v~~v~~--~~~~l~sgs~dg~i~iwd 490 (552)
|+.||.|+||+. +++...+..... .|++++| .|..|++++.++.+.+|.
T Consensus 405 GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 405 GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999994 456666655443 5999998 789999999999999993
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=204.43 Aligned_cols=265 Identities=19% Similarity=0.267 Sum_probs=217.0
Q ss_pred ccceeeecCcceEEEeeCCCeEEE---------EEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeC
Q 008820 222 IDQARAAGGVKDLVNGLSKGNVKF---------KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKG 290 (552)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 290 (552)
+.+....+....++++..+.+..+ ..|+||...|+.+.|+ ...+++++.|..|+||.............
T Consensus 222 i~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~ 301 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRP 301 (506)
T ss_pred eeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccccc
Confidence 334444444455666666655444 4489999999999999 78899999999999999988888888889
Q ss_pred CCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECC
Q 008820 291 HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLL 370 (552)
Q Consensus 291 h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~ 370 (552)
|.++|+.+..+|.++ +|++++.||+..+.|++++........- ..........|+|||..|.+|+.||.|++||+.
T Consensus 302 h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~---~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 302 HEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDE---TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred ccccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEEEEeec---cccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence 999999999999776 7799999999999999977543332221 111223456899999999999999999999999
Q ss_pred CCceeEEecCCCCCeEEEEEe-CC-EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcE
Q 008820 371 DGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSI 448 (552)
Q Consensus 371 ~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 448 (552)
++..+..|.+|.++|.+++|+ ++ ++++++.|+.|++||+|..+...++.......+.+ +.|.+.|.+|+.++.|=+|
T Consensus 378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s-~~fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNS-LSFDQSGTYLGIAGSDLQV 456 (506)
T ss_pred CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccccccee-EEEcCCCCeEEeecceeEE
Confidence 999999999999999999999 45 89999999999999999999888888776554555 6999999999999888777
Q ss_pred EEEeCC----cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEec
Q 008820 449 KVWRND----KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQEL 491 (552)
Q Consensus 449 ~iwd~~----~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~ 491 (552)
++++.. +.+..+..|.+..+++.| ..++++++|.|..++++.+
T Consensus 457 y~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 457 YICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 777722 356677778888899998 6789999999999888754
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-26 Score=218.90 Aligned_cols=306 Identities=21% Similarity=0.303 Sum_probs=223.6
Q ss_pred cCcceEEEeeCCCeEEEEEe---------------ecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCC--eEEEEEe
Q 008820 229 GGVKDLVNGLSKGNVKFKDL---------------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF--SHVHTFK 289 (552)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~l---------------~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~--~~~~~~~ 289 (552)
+.++.++++..|+.+++|.+ +.|.++|+.++.. ++.|+|+|.|-+|++|+...+ -+..++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 44556889999999998874 4577888888776 889999999999999999877 5778889
Q ss_pred CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCC--Cc---cccccccCCCceeeeEEEEee--CCCEEEEeeCCC
Q 008820 290 GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLG--HE---PLKKWNEEKDWRYSGIHALTT--SGRYLYTGSGDR 362 (552)
Q Consensus 290 ~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~--~~~~l~sgs~dg 362 (552)
.|.+.|.|+++...+..++++|+-|+.|.+||++++.. .. .+..-... ..+..++.++.. .+..|++|+..+
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~-sG~k~siYSLA~N~t~t~ivsGgtek 193 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLG-SGPKDSIYSLAMNQTGTIIVSGGTEK 193 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCC-CCCccceeeeecCCcceEEEecCccc
Confidence 99999999999655677999999999999999997633 11 11110000 013334555544 455999999999
Q ss_pred cEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEE
Q 008820 363 TIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLV 440 (552)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 440 (552)
.+++||.++++.+..+++|...|.++..+ ++ .++++|.||+|++||+...+++.++..|..+ +.+ +..+|+-..++
T Consensus 194 ~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~-VWa-L~~~~sf~~vY 271 (735)
T KOG0308|consen 194 DLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG-VWA-LQSSPSFTHVY 271 (735)
T ss_pred ceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc-eEE-EeeCCCcceEE
Confidence 99999999999999999999999999999 44 9999999999999999999999999988665 555 67788889999
Q ss_pred EEECCCcEEEEeCCccee--eeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCC-------eeeeeec--------
Q 008820 441 VSHESGSIKVWRNDKFMK--SMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGD-------EFEEDVI-------- 501 (552)
Q Consensus 441 ~g~~dg~i~iwd~~~~~~--~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~-------~~~~~~~-------- 501 (552)
+|+.||.|+.=|++.... .+-....+|..+.. ..+-+.+++.|+.|+-|...-. .+.....
T Consensus 272 sG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~ 351 (735)
T KOG0308|consen 272 SGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCD 351 (735)
T ss_pred ecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCcccc
Confidence 999999999998776311 11223345555544 2344477788899999965421 1110000
Q ss_pred ----cCCCcccCcceEEEEEe-CC-eEEEEeCCCeEEEEEec
Q 008820 502 ----PTGAIPCGSVITALLYW-QG-KLFVGCADRTVKIALCN 537 (552)
Q Consensus 502 ----~~~~~~~~~~v~~l~~~-~~-~l~s~s~Dg~v~iw~~~ 537 (552)
+...++....+..-+.- +. +++|-..+|.+.+||+-
T Consensus 352 ~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl 393 (735)
T KOG0308|consen 352 LTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDIL 393 (735)
T ss_pred ccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEee
Confidence 00001111122222222 22 39999999999999985
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-26 Score=203.59 Aligned_cols=263 Identities=15% Similarity=0.217 Sum_probs=221.3
Q ss_pred ccccceeeecCcceEEEeeCCCeEEEEEe-----------------ecCccceEEEEEc--CCEEEEEeCCCcEEEEeCC
Q 008820 220 ADIDQARAAGGVKDLVNGLSKGNVKFKDL-----------------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK 280 (552)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------------~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~ 280 (552)
..+.++.++++++.+++++.+|-+.+|++ .-|.++|.|+.|+ ..++++|+.||.|+||.+.
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence 34778999999999999999999999985 2478999999999 8899999999999999999
Q ss_pred CCeEEEEEe-CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEee
Q 008820 281 DFSHVHTFK-GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS 359 (552)
Q Consensus 281 ~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs 359 (552)
+|.+++.|. .|+..|+++.|+.++. .+++++.|.++++--+.+++..+.+ .++..+ ..-..|.++|..+++++
T Consensus 294 tG~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~LKEf---rGHsSy--vn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 294 TGQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKCLKEF---RGHSSY--VNEATFTDDGHHIISAS 367 (508)
T ss_pred cchHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchhHHHh---cCcccc--ccceEEcCCCCeEEEec
Confidence 999999996 8999999999998766 5689999999999999877654444 444432 22346889999999999
Q ss_pred CCCcEEEEECCCCceeEEecC--CCCCeEEEEEe---CCEEEEEeCCCcEEEEECCCCceeEEEecCC--CCceEEEEEE
Q 008820 360 GDRTIKAWSLLDGTLSCTMSG--HKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDS--SGAVSSVLSL 432 (552)
Q Consensus 360 ~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~ 432 (552)
.||+|++|+..+.+++.+++. ...+|+++-.- +..++.|...++|++.++. |+.++.+.... .+...+ ++.
T Consensus 368 sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~-~~l 445 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFIN-AIL 445 (508)
T ss_pred CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEE-EEe
Confidence 999999999999999998864 44567777665 4489999999999999984 77777775432 233333 588
Q ss_pred cCCCCEEEEEECCCcEEEEe--CCcceeeeecccceEEEEE--ecCCEEEEEeCCCeEEEEe
Q 008820 433 TAVQHTLVVSHESGSIKVWR--NDKFMKSMQTHKGSVFAVF--LEGKWLFTGGWDKTVSVQE 490 (552)
Q Consensus 433 s~~~~~l~~g~~dg~i~iwd--~~~~~~~~~~h~~~v~~v~--~~~~~l~sgs~dg~i~iwd 490 (552)
+|.|.++++.++|+.++.|. .++....+..|...+..+. |..+.+++-++||.+++|.
T Consensus 446 SpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 446 SPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 99999999999999999998 5678888999999998886 4888999999999999995
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=207.15 Aligned_cols=267 Identities=21% Similarity=0.334 Sum_probs=209.6
Q ss_pred ccceEEEEEc---C-CEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCC
Q 008820 252 RDCVTGLAVG---G-GFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLG 327 (552)
Q Consensus 252 ~~~V~~l~~s---~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 327 (552)
.++|++++|+ . ++.+|+|. .+.||+..+....+++.-....|.++.|-.+|. ++++|+..|.|+++|..+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~--rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~-LlaaGD~sG~V~vfD~k~--- 99 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSV--RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGR-LLAAGDESGHVKVFDMKS--- 99 (487)
T ss_pred cCcceeEecCCCCCCceEEeccc--EEEEEecchhhhhhhHHhhccceeEEEeecCCe-EEEccCCcCcEEEecccc---
Confidence 4689999999 3 45555543 699999998888888888889999999987554 889999999999999553
Q ss_pred CccccccccCCCceeeeEEEEeeCCC-EEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe---CCEEEEEeCCCc
Q 008820 328 HEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLYSGSRDGT 403 (552)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~ 403 (552)
...++.+..+.. ......|++.++ .+++|+.|+.+++||+.+......+.+|++.|.|.+++ +..+++||.||+
T Consensus 100 r~iLR~~~ah~a--pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~ 177 (487)
T KOG0310|consen 100 RVILRQLYAHQA--PVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGK 177 (487)
T ss_pred HHHHHHHhhccC--ceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCce
Confidence 234444444432 233456777655 88999999999999999998877899999999999999 338999999999
Q ss_pred EEEEECCCC-ceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC---cceeeeecccceEEEEEe--cCCEE
Q 008820 404 IRLWSLSDH-SLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND---KFMKSMQTHKGSVFAVFL--EGKWL 477 (552)
Q Consensus 404 i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~---~~~~~~~~h~~~v~~v~~--~~~~l 477 (552)
|++||++.. ..+..+. +..++..+ .+-|.|..+++++. ..|++||+- +.+.....|...|+|+.+ ++..|
T Consensus 178 vrl~DtR~~~~~v~eln--hg~pVe~v-l~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rL 253 (487)
T KOG0310|consen 178 VRLWDTRSLTSRVVELN--HGCPVESV-LALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRL 253 (487)
T ss_pred EEEEEeccCCceeEEec--CCCceeeE-EEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceE
Confidence 999999987 4444444 34556664 66677888888765 479999954 344455569999999988 77999
Q ss_pred EEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEEeCCCeEEEEEe
Q 008820 478 FTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGCADRTVKIALC 536 (552)
Q Consensus 478 ~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~Dg~v~iw~~ 536 (552)
++||-|+.|++||+.+-+....... .++|.+++.+| ..++.|..||.+.+=+.
T Consensus 254 lS~sLD~~VKVfd~t~~Kvv~s~~~------~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 254 LSGSLDRHVKVFDTTNYKVVHSWKY------PGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred eecccccceEEEEccceEEEEeeec------ccceeeEEecCCCceEEEecccceeeeehh
Confidence 9999999999999877666555443 67799999996 44999999999887643
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=188.29 Aligned_cols=267 Identities=16% Similarity=0.224 Sum_probs=204.9
Q ss_pred cccceeeecCcceEEEeeCCCeEE---------EEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q 008820 221 DIDQARAAGGVKDLVNGLSKGNVK---------FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFK 289 (552)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 289 (552)
++.++.+..++..+.+...+.... +-++.||+++|+|+..+ .+.++||+.|.++++||+++|+++.+++
T Consensus 12 plTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k 91 (327)
T KOG0643|consen 12 PLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK 91 (327)
T ss_pred ccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee
Confidence 355566666666666666555444 44689999999999998 8999999999999999999999999998
Q ss_pred CCCCCeEEEEEecCCCCEEEEE----cCCCcEEEEeCCCCC----CCccccccccCCCceeeeEEEEeeCCCEEEEeeCC
Q 008820 290 GHDHKVMAVVYVDEDQPLCISG----DSGGGIFVWSFSFPL----GHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD 361 (552)
Q Consensus 290 ~h~~~v~~v~~~~~~~~~l~s~----~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d 361 (552)
...+|..+.|++.++..+++. +..+.|.++|++... ...++.....+. ......-+.+-++.|++|..|
T Consensus 92 -~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--skit~a~Wg~l~~~ii~Ghe~ 168 (327)
T KOG0643|consen 92 -TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD--SKITSALWGPLGETIIAGHED 168 (327)
T ss_pred -cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc--cceeeeeecccCCEEEEecCC
Confidence 567899999999777555544 245789999998543 222233222222 222344677889999999999
Q ss_pred CcEEEEECCCCc-eeEEecCCCCCeEEEEEe-CC-EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCE
Q 008820 362 RTIKAWSLLDGT-LSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHT 438 (552)
Q Consensus 362 g~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 438 (552)
|.|..||+++|+ .+...+.|...|+.+.++ +. +++++|.|.+-++||.++.+.++++.... ++.+ .+++|....
T Consensus 169 G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~--PvN~-aaisP~~d~ 245 (327)
T KOG0643|consen 169 GSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTER--PVNT-AAISPLLDH 245 (327)
T ss_pred CcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecc--cccc-eecccccce
Confidence 999999999984 555667899999999999 33 99999999999999999999999998653 3555 588888877
Q ss_pred EEEEECCCcEEEE--------------e--CCcceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCC
Q 008820 439 LVVSHESGSIKVW--------------R--NDKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAG 493 (552)
Q Consensus 439 l~~g~~dg~i~iw--------------d--~~~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~ 493 (552)
++.|+.....-+= + ..+.+..+++|-++|+++++ +|+..++|++||.|++.-+..
T Consensus 246 VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 246 VILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred EEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 7777654333222 1 11345677899999999886 999999999999999976554
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-24 Score=216.86 Aligned_cols=203 Identities=19% Similarity=0.236 Sum_probs=159.5
Q ss_pred EeecCccceEEEEEc---CCEEEEEeCCCcEEEEeCCCC-------eEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCc
Q 008820 247 DLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDF-------SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGG 316 (552)
Q Consensus 247 ~l~~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~~-------~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~ 316 (552)
.+.||.+.|++++|+ +++|++|+.|++|++||+.++ +++..+.+|...|.+++|+|++..+|++++.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 378999999999998 579999999999999999765 3567889999999999999988789999999999
Q ss_pred EEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCe-EEEEEe--CC
Q 008820 317 IFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAV-STLAVC--NG 393 (552)
Q Consensus 317 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v-~~l~~~--~~ 393 (552)
|++||++++.... .+..+.. .....++++++++|++|+.|+.|++||+++++.+..+.+|.+.+ ..+.|. ++
T Consensus 150 VrIWDl~tg~~~~---~l~~h~~--~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~ 224 (493)
T PTZ00421 150 VNVWDVERGKAVE---VIKCHSD--QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKD 224 (493)
T ss_pred EEEEECCCCeEEE---EEcCCCC--ceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCC
Confidence 9999998764332 2222222 12335778899999999999999999999999999999898654 455666 34
Q ss_pred EEEEEe----CCCcEEEEECCCCc-eeEEEecCCCCceEEEEEEcCCCCEEEEEE-CCCcEEEEeCCc
Q 008820 394 VLYSGS----RDGTIRLWSLSDHS-LLTVLEEDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRNDK 455 (552)
Q Consensus 394 ~l~s~~----~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~ 455 (552)
.+++++ .|+.|++||+++.. ++.....+... ......++++++++++++ .|+.|++||+.+
T Consensus 225 ~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~-~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 225 LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS-ALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCC-ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 666554 47999999998765 34333333222 333457899999999887 599999999754
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-24 Score=187.90 Aligned_cols=279 Identities=14% Similarity=0.164 Sum_probs=217.9
Q ss_pred eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcC--CCcEEEEeCC
Q 008820 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDS--GGGIFVWSFS 323 (552)
Q Consensus 248 l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~--dg~i~vwd~~ 323 (552)
|..-.+.|+++.|+ |.++++++.|.++++||..+++.++++..+.-.+..++|......+ +.++. |.+|+..++.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~-i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTV-IHSSTKEDDTIRYLSLH 88 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceE-EEccCCCCCceEEEEee
Confidence 44566789999999 9999999999999999999999999999888899999998766544 44444 8999999998
Q ss_pred CCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeCC
Q 008820 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRD 401 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~d 401 (552)
+. +.++-+.+|... + .-.+++|-++.+++++.|++|++||++..++...+.....+ ..+|+ .+ ++|++...
T Consensus 89 dN---kylRYF~GH~~~-V-~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 89 DN---KYLRYFPGHKKR-V-NSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGS 161 (311)
T ss_pred cC---ceEEEcCCCCce-E-EEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCC
Confidence 65 445555555542 2 23477888899999999999999999988888777644444 45677 44 66666666
Q ss_pred CcEEEEECCCC--ceeEEEecC-CCCceEEEEEEcCCCCEEEEEECCCcEEEEe--CCcceeeeecccceE----E-EEE
Q 008820 402 GTIRLWSLSDH--SLLTVLEED-SSGAVSSVLSLTAVQHTLVVSHESGSIKVWR--NDKFMKSMQTHKGSV----F-AVF 471 (552)
Q Consensus 402 g~i~iwd~~~~--~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd--~~~~~~~~~~h~~~v----~-~v~ 471 (552)
..|++||+|.. .+..++... ........+.|+|||+.++.++..+.+++.| .+.....+.++...- . +..
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence 69999999874 345555443 2233445589999999999999999999999 456677777665432 2 344
Q ss_pred ecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEecC
Q 008820 472 LEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCNR 538 (552)
Q Consensus 472 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~~ 538 (552)
||++++++|+.||+|.+|+++++......... +..++.++.|+|.....++.+..+.+|-.+.
T Consensus 242 Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~----~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~ 304 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP----NGGPVSCVRFNPRYAMFVSASSNLVFWLPDE 304 (311)
T ss_pred CCCcEEEEecCCCcEEEEEcCCCcEeeEecCC----CCCCccccccCCceeeeeecCceEEEEeccc
Confidence 69999999999999999999988776665543 3667888999999988888888999998763
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-25 Score=204.86 Aligned_cols=252 Identities=19% Similarity=0.269 Sum_probs=199.8
Q ss_pred EEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccc-cc----------cccC--CCceeeeEEEEeeC
Q 008820 285 VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPL-KK----------WNEE--KDWRYSGIHALTTS 351 (552)
Q Consensus 285 ~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~----------~~~~--~~~~~~~~~~~~~~ 351 (552)
...+..|.-++.+++++|++. +.++++.||+|.-|++.++.....+ .. .... ......-..++++|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeecccc-ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 455677999999999999766 6699999999999999887643111 11 0011 11112234578999
Q ss_pred CCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEE
Q 008820 352 GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSV 429 (552)
Q Consensus 352 ~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 429 (552)
+++|++|+.|..|.|||.++.+.++.+.+|.+.|.+++|. .+.+++++.|.+|++|++.....+.++.+|+. .+..
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-~v~~- 291 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-GVLG- 291 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc-ceee-
Confidence 9999999999999999999999999999999999999999 44999999999999999998888888877754 3444
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCc-ceeeeecccceEEEEEe-cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcc
Q 008820 430 LSLTAVQHTLVVSHESGSIKVWRNDK-FMKSMQTHKGSVFAVFL-EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIP 507 (552)
Q Consensus 430 ~~~s~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~h~~~v~~v~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~ 507 (552)
+....-++.+-+|+.|+++++|++.. ....+.+|.+.+-|+++ +...+++||.||.|.+|++...+........+.+.
T Consensus 292 IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 292 IDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred echhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeecccccc
Confidence 34455577788888999999999754 45567889999999998 99999999999999999998776655443333222
Q ss_pred c-------CcceEEEEEeC--CeEEEEeCCCeEEEEEecCC
Q 008820 508 C-------GSVITALLYWQ--GKLFVGCADRTVKIALCNRQ 539 (552)
Q Consensus 508 ~-------~~~v~~l~~~~--~~l~s~s~Dg~v~iw~~~~~ 539 (552)
. ...|++++..+ +.+++|+.+|.|++|.++..
T Consensus 372 ~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred CCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 1 23788998886 56999999999999999866
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-25 Score=219.79 Aligned_cols=280 Identities=16% Similarity=0.268 Sum_probs=191.2
Q ss_pred EEee-cCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCC----------CeEEEEEec---CCC-CEE
Q 008820 246 KDLQ-GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH----------KVMAVVYVD---EDQ-PLC 308 (552)
Q Consensus 246 ~~l~-~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~----------~v~~v~~~~---~~~-~~l 308 (552)
..+. +|.++|+++.|+ |+|||+|+.|+.|+||.+...+....-.+..+ .+..+.-++ .+. ...
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3455 899999999999 99999999999999999865332111000000 000000000 000 000
Q ss_pred EEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCC-EEEEeeCCCcEEEEECCCCceeEEecCCCCCeEE
Q 008820 309 ISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVST 387 (552)
Q Consensus 309 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 387 (552)
-.+.....+.+-+-...-...++..+.+ |...++.+++..+ +|++++.|.+|++|++...+++..|. |.+-|+|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~G----Ht~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKG----HTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTC 414 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhc----cchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEE
Confidence 1111112211111111112344444444 4446778888755 99999999999999999999999998 9999999
Q ss_pred EEEe---CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcceeee----
Q 008820 388 LAVC---NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSM---- 460 (552)
Q Consensus 388 l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~---- 460 (552)
++|+ ++++++|+-||.||||++...+.+.-...+ ..++. +++.|||+..++|+.+|.+++|++..+....
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~--~lITA-vcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR--DLITA-VCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehhhh--hhhee-EEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 9999 559999999999999999887766554443 44444 7999999999999999999999976432211
Q ss_pred -------ecccceEEEEEe---cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEe-C-CeEEEEeCC
Q 008820 461 -------QTHKGSVFAVFL---EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-Q-GKLFVGCAD 528 (552)
Q Consensus 461 -------~~h~~~v~~v~~---~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~-~~l~s~s~D 528 (552)
..|. .|+.+.+ +...+++.+.|..|||+|.++..+...+...... ...+.+ .|+ + ..|++|+.|
T Consensus 492 ~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~--~SQ~~A-sfs~Dgk~IVs~seD 567 (712)
T KOG0283|consen 492 RLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT--SSQISA-SFSSDGKHIVSASED 567 (712)
T ss_pred eeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC--Ccceee-eEccCCCEEEEeecC
Confidence 1133 7999886 4556888889999999999877776665544321 233333 333 4 459999999
Q ss_pred CeEEEEEec
Q 008820 529 RTVKIALCN 537 (552)
Q Consensus 529 g~v~iw~~~ 537 (552)
..|+||+++
T Consensus 568 s~VYiW~~~ 576 (712)
T KOG0283|consen 568 SWVYIWKND 576 (712)
T ss_pred ceEEEEeCC
Confidence 999999985
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-25 Score=219.91 Aligned_cols=229 Identities=20% Similarity=0.303 Sum_probs=195.2
Q ss_pred CCCccccceeeecCcceEEEeeCCCeEEEEE-------------------------------------------------
Q 008820 217 SDGADIDQARAAGGVKDLVNGLSKGNVKFKD------------------------------------------------- 247 (552)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 247 (552)
.+...|.+..|+.+++.++++..|+-+++|.
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4455699999999999999999999999885
Q ss_pred --------------------eecCccceEEEEEc-CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCC
Q 008820 248 --------------------LQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQP 306 (552)
Q Consensus 248 --------------------l~~H~~~V~~l~~s-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 306 (552)
|.||.+.|..+.|+ .++|+|+|.|.|||+|++....+++.|. |.+.|+||+|+|.+.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDR 423 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCC
Confidence 24799999999999 9999999999999999999999999987 9999999999999999
Q ss_pred EEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEec-------
Q 008820 307 LCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMS------- 379 (552)
Q Consensus 307 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~------- 379 (552)
++++|+-||.|+||++... .+..|..-+ ......++.|+|+..++|+.+|.+++|+....+....+.
T Consensus 424 yFiSGSLD~KvRiWsI~d~----~Vv~W~Dl~--~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDK----KVVDWNDLR--DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred cEeecccccceEEeecCcC----eeEeehhhh--hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 9999999999999998743 233333322 223456899999999999999999999998777665442
Q ss_pred --CCCCCeEEEEEe---CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 008820 380 --GHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN 453 (552)
Q Consensus 380 --~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 453 (552)
.|. .|+.+.|. .+.+++.+.|..|||+|.++..++..+++.+.........|+.||++|+++++|..|++|+.
T Consensus 498 k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 498 KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 133 79999998 33789999999999999999999999987765555444689999999999999999999985
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-23 Score=174.73 Aligned_cols=285 Identities=18% Similarity=0.248 Sum_probs=211.5
Q ss_pred ecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCC------C---------eEEEEEeCCCCCeEEEEEecCCCCEEEEE
Q 008820 249 QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD------F---------SHVHTFKGHDHKVMAVVYVDEDQPLCISG 311 (552)
Q Consensus 249 ~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~------~---------~~~~~~~~h~~~v~~v~~~~~~~~~l~s~ 311 (552)
-....+|.+++|+ |.+.+.|+...+.||..... + -..+.-+.|.+.|+|.+|+|.++ ++++|
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge-liatg 107 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE-LIATG 107 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC-eEEec
Confidence 3456789999999 99999999999999875431 1 01223357999999999999776 88999
Q ss_pred cCCCcEEEEeCCCCCCC--ccccccccCCCceeeeEEEEeeC----CCEEEEee-CCCcEEEEECCCCceeEEecCCCCC
Q 008820 312 DSGGGIFVWSFSFPLGH--EPLKKWNEEKDWRYSGIHALTTS----GRYLYTGS-GDRTIKAWSLLDGTLSCTMSGHKSA 384 (552)
Q Consensus 312 ~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~h~~~ 384 (552)
+.|.+|++..++..... ..-..++.+.. .... .+|--+ +..|++++ .|..|++-|..+|+..+.+.+|.+.
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~nmhdg-tird-l~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtgh 185 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEFNMHDG-TIRD-LAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGH 185 (350)
T ss_pred CCCceEEEEecccccccccCcceeeeecCC-ceee-eEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCccc
Confidence 99999999877643322 11122222222 1111 123222 33666654 5778888899999999999999999
Q ss_pred eEEEE-EeCCEEEEEeCCCcEEEEECCCCceeEEEecCC--C---CceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cc
Q 008820 385 VSTLA-VCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDS--S---GAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KF 456 (552)
Q Consensus 385 v~~l~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~---~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~ 456 (552)
|.++- |++-++++|+.|.+|++||++-..++.++.... . ......++..|.|++|++|..|....+||++ .+
T Consensus 186 ilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~ 265 (350)
T KOG0641|consen 186 ILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM 265 (350)
T ss_pred EEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence 98874 445699999999999999999988888775321 1 1233346899999999999999999999975 58
Q ss_pred eeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCe--EEEEeCCCeEE
Q 008820 457 MKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK--LFVGCADRTVK 532 (552)
Q Consensus 457 ~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~s~s~Dg~v~ 532 (552)
++.+..|+..|.++.| ...++++++.|..|++=|+.+.-.. .+.......+...+..+.|++.. +++.+.|.++.
T Consensus 266 iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~-el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~t 344 (350)
T KOG0641|consen 266 IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH-ELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTAT 344 (350)
T ss_pred eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhh-cCceEEEEeccCceEEEEecCccceeeeccCcceEE
Confidence 8999999999999987 6779999999999999999864211 11111111235667778899643 89999999999
Q ss_pred EEEec
Q 008820 533 IALCN 537 (552)
Q Consensus 533 iw~~~ 537 (552)
+|-++
T Consensus 345 lwa~~ 349 (350)
T KOG0641|consen 345 LWALN 349 (350)
T ss_pred EeccC
Confidence 99876
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-24 Score=208.54 Aligned_cols=233 Identities=21% Similarity=0.379 Sum_probs=199.4
Q ss_pred ccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeC-CCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCC
Q 008820 252 RDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKG-HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328 (552)
Q Consensus 252 ~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 328 (552)
.+.|+++.|+ |++|+.|..+|.|.|||..+.+.+.++.+ |...|.+++|. ...+.+|+.|+.|..+|++..+..
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhh
Confidence 8999999999 99999999999999999999999999999 99999999996 558899999999999999976544
Q ss_pred ccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe---CCEEEEEe--CCCc
Q 008820 329 EPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLYSGS--RDGT 403 (552)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~--~dg~ 403 (552)
.. ....|. ...+-..++++++++++|+.|+.+.|||....+++..+..|...|.+++|+ .++||+|+ .|++
T Consensus 294 ~~--~~~~H~--qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~ 369 (484)
T KOG0305|consen 294 VS--TLQGHR--QEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC 369 (484)
T ss_pred hh--hhhccc--ceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE
Confidence 33 222222 223345788899999999999999999998889999999999999999999 67999875 6999
Q ss_pred EEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEE--ECCCcEEEEeCC--cceeeeecccceEEEEEe--cCCEE
Q 008820 404 IRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS--HESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWL 477 (552)
Q Consensus 404 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g--~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l 477 (552)
|++||..++..+..+... ...+.+.|++..+.|+++ ..++.|.||+.. +.+..+.+|...|..+++ ||..+
T Consensus 370 i~fwn~~~g~~i~~vdtg---sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i 446 (484)
T KOG0305|consen 370 IKFWNTNTGARIDSVDTG---SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETI 446 (484)
T ss_pred EEEEEcCCCcEecccccC---CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEE
Confidence 999999999998888643 334447999998777764 457789999964 467788999999988765 99999
Q ss_pred EEEeCCCeEEEEecCCC
Q 008820 478 FTGGWDKTVSVQELAGD 494 (552)
Q Consensus 478 ~sgs~dg~i~iwd~~~~ 494 (552)
++|+.|.++++|++-+.
T Consensus 447 ~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 447 VTGAADETLRFWNLFDE 463 (484)
T ss_pred EEecccCcEEeccccCC
Confidence 99999999999999764
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-25 Score=214.42 Aligned_cols=279 Identities=20% Similarity=0.346 Sum_probs=217.0
Q ss_pred cCccceE---EEEEc---CCEEEEEeCCCcEEEEeCCCC------eEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcE
Q 008820 250 GHRDCVT---GLAVG---GGFLFSSSFDKSIHVWSLKDF------SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGI 317 (552)
Q Consensus 250 ~H~~~V~---~l~~s---~~~l~s~s~dg~I~iwd~~~~------~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i 317 (552)
.|...|. ++..+ +++|+||+.||.|++|+.... ..+.+++.|.+.|++++...+++ .|+++|.|-+|
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~-tlIS~SsDtTV 97 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK-TLISASSDTTV 97 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC-ceEEecCCceE
Confidence 4555555 44444 788999999999999998532 24677889999999998876555 67999999999
Q ss_pred EEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCc--eeE--------Eec-CCCCCeE
Q 008820 318 FVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT--LSC--------TMS-GHKSAVS 386 (552)
Q Consensus 318 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~--~~~--------~~~-~h~~~v~ 386 (552)
++|+..... ..+...+..|.+. ..++.-...+...+++|+-|+.|.+||++++. .+. .+. ++...|+
T Consensus 98 K~W~~~~~~-~~c~stir~H~DY-Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY 175 (735)
T KOG0308|consen 98 KVWNAHKDN-TFCMSTIRTHKDY-VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY 175 (735)
T ss_pred EEeecccCc-chhHhhhhcccch-heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcccee
Confidence 999998664 4455555555543 22222225567799999999999999999772 222 223 7888999
Q ss_pred EEEEeCC--EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeec
Q 008820 387 TLAVCNG--VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQT 462 (552)
Q Consensus 387 ~l~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~ 462 (552)
+++.++. .+++|+..+.+++||.++.+.+..+.+|. ..+.. +-.+.||..++++++||+|++||++ .++.++..
T Consensus 176 SLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHT-dNVr~-ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v 253 (735)
T KOG0308|consen 176 SLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHT-DNVRV-LLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV 253 (735)
T ss_pred eeecCCcceEEEecCcccceEEeccccccceeeeeccc-cceEE-EEEcCCCCeEeecCCCceEEeeeccccceeeeEEe
Confidence 9999844 88999999999999999999999999774 44444 6889999999999999999999987 47889999
Q ss_pred ccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEe--CCeEEEEeCCCeEEEEEecC
Q 008820 463 HKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW--QGKLFVGCADRTVKIALCNR 538 (552)
Q Consensus 463 h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~Dg~v~iw~~~~ 538 (552)
|...|+++.. +-.++++|+.||.|+.=|+++......+... ..+|..+..+ ++.+.+++.|+.|+-|....
T Consensus 254 H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~-----daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 254 HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE-----DAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred ccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC-----CCchhhhhhccccCCceeeeccccceecCCcc
Confidence 9999998875 6779999999999999999874322222111 4456666666 45678999999999998764
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=206.62 Aligned_cols=297 Identities=21% Similarity=0.323 Sum_probs=238.9
Q ss_pred ceEEEeeCCCeEEE---------EEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEE
Q 008820 232 KDLVNGLSKGNVKF---------KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVY 300 (552)
Q Consensus 232 ~~~~~~~~~~~~~~---------~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~ 300 (552)
+.++.+...|..++ ++++++...|+++.-+ -+.++.|..+|+|.+++++.++.+.+++...+.|++++|
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSF 252 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSF 252 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEe
Confidence 44455555555554 5578899999999988 789999999999999999999999999966799999999
Q ss_pred ecCCCCEEEEEcCCCcEEEEeCCCCCCCcccc--------------------------------------------c---
Q 008820 301 VDEDQPLCISGDSGGGIFVWSFSFPLGHEPLK--------------------------------------------K--- 333 (552)
Q Consensus 301 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--------------------------------------------~--- 333 (552)
..||..++++|+..|.+.+||++..+....++ .
T Consensus 253 rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~G 332 (910)
T KOG1539|consen 253 RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGG 332 (910)
T ss_pred ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccC
Confidence 99999999999999999999997411000000 0
Q ss_pred --------------------------------------------------------------------------------
Q 008820 334 -------------------------------------------------------------------------------- 333 (552)
Q Consensus 334 -------------------------------------------------------------------------------- 333 (552)
T Consensus 333 Hs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~ 412 (910)
T KOG1539|consen 333 HSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD 412 (910)
T ss_pred CCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhc
Confidence
Q ss_pred --------------cccC-----------C----CceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEe---cCC
Q 008820 334 --------------WNEE-----------K----DWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM---SGH 381 (552)
Q Consensus 334 --------------~~~~-----------~----~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~---~~h 381 (552)
|.-. . ........++++.|++.+.|+..|.|-+|++++|-....+ ..|
T Consensus 413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah 492 (910)
T KOG1539|consen 413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH 492 (910)
T ss_pred ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccc
Confidence 0000 0 0000112266778899999999999999999999988888 589
Q ss_pred CCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeC--Ccce
Q 008820 382 KSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFM 457 (552)
Q Consensus 382 ~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~--~~~~ 457 (552)
.++|+.++.+ +..+++++.+|.+++||..+...+..+..... +.. +..+.....++.+..|-.|+++|. ++.+
T Consensus 493 ~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~--~~~-iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv 569 (910)
T KOG1539|consen 493 KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSS--ITG-IVYHRVSDLLAIALDDFSIRVVDVVTRKVV 569 (910)
T ss_pred cCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCC--cce-eeeeehhhhhhhhcCceeEEEEEchhhhhh
Confidence 9999999998 56899999999999999999888888876532 222 456667778999999999999994 5688
Q ss_pred eeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEEeCC-CeEE
Q 008820 458 KSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGCAD-RTVK 532 (552)
Q Consensus 458 ~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~D-g~v~ 532 (552)
+.+.+|.+.|++++| ||++|++++.|++|++||+.++.+.-.+.. ..++.++.|+| +.|+|+..| .-|+
T Consensus 570 R~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v------d~~~~sls~SPngD~LAT~Hvd~~gIy 643 (910)
T KOG1539|consen 570 REFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV------DSPCTSLSFSPNGDFLATVHVDQNGIY 643 (910)
T ss_pred HHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec------CCcceeeEECCCCCEEEEEEecCceEE
Confidence 999999999999887 999999999999999999999887765554 67789999997 459999988 7799
Q ss_pred EEEec
Q 008820 533 IALCN 537 (552)
Q Consensus 533 iw~~~ 537 (552)
+|.-.
T Consensus 644 lWsNk 648 (910)
T KOG1539|consen 644 LWSNK 648 (910)
T ss_pred EEEch
Confidence 99754
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=212.63 Aligned_cols=223 Identities=13% Similarity=0.181 Sum_probs=167.2
Q ss_pred EEEEeecCccceEEEEEc---CCEEEEEeCCCcEEEEeCCCCe--------EEEEEeCCCCCeEEEEEecCCCCEEEEEc
Q 008820 244 KFKDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFS--------HVHTFKGHDHKVMAVVYVDEDQPLCISGD 312 (552)
Q Consensus 244 ~~~~l~~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~~~--------~~~~~~~h~~~v~~v~~~~~~~~~l~s~~ 312 (552)
.+..+.+|.++|.+++|+ +.+|+||+.|++|+|||+.++. ++..+.+|...|.+++|+|++..++++++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 456789999999999998 5799999999999999997642 34567899999999999998888889999
Q ss_pred CCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEE---
Q 008820 313 SGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLA--- 389 (552)
Q Consensus 313 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~--- 389 (552)
.|++|++||++++.....+. .. ......+|+++|++|++++.|+.|++||+++++.+.++.+|.+.+.+..
T Consensus 146 ~DgtIrIWDl~tg~~~~~i~---~~---~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~ 219 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAFQIN---MP---KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWI 219 (568)
T ss_pred CCCeEEEEECCCCcEEEEEe---cC---CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEe
Confidence 99999999998765332221 11 1123457888999999999999999999999999999999988764433
Q ss_pred --Ee--CCEEEEEeCCC----cEEEEECCC-CceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcc-eee
Q 008820 390 --VC--NGVLYSGSRDG----TIRLWSLSD-HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF-MKS 459 (552)
Q Consensus 390 --~~--~~~l~s~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~ 459 (552)
|+ ++++++++.|+ +|++||+++ ++++..+..+...........++++.++++|+.|+.|++|+.... ...
T Consensus 220 ~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~ 299 (568)
T PTZ00420 220 DGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRK 299 (568)
T ss_pred eeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEe
Confidence 22 34888888774 799999995 566666554432222222234566889999999999999996532 222
Q ss_pred eec--ccceEEEEEe
Q 008820 460 MQT--HKGSVFAVFL 472 (552)
Q Consensus 460 ~~~--h~~~v~~v~~ 472 (552)
+.. +..+..++.+
T Consensus 300 l~~~~s~~p~~g~~f 314 (568)
T PTZ00420 300 VNEYKSCSPFRSFGF 314 (568)
T ss_pred ecccccCCCccceEE
Confidence 221 3455555655
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-24 Score=186.85 Aligned_cols=261 Identities=18% Similarity=0.223 Sum_probs=194.9
Q ss_pred ccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCc
Q 008820 252 RDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHE 329 (552)
Q Consensus 252 ~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 329 (552)
++.|+++.|+ ++.|+.+++||++++||+........++ |..++.+++|.+ ...+++|+.||.|+.+|+.++....
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC--CceEEEeccCceEEEEEecCCccee
Confidence 5789999999 7888888899999999998876555555 899999999986 3467999999999999999764332
Q ss_pred cccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEeCCCcEEEEEC
Q 008820 330 PLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSL 409 (552)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~ 409 (552)
.-. |.. . ..+....+..+.+++|+.|++|++||.++......+.. ...|.|+...++.|+.|+.|..+.+||+
T Consensus 90 igt----h~~-~-i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 90 IGT----HDE-G-IRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVSGNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred ecc----CCC-c-eEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEeccCCEEEEeecCceEEEEEc
Confidence 211 111 1 12223445567899999999999999998666666653 4489999999999999999999999999
Q ss_pred CCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEE--eCC----cceeeeecccc---------eEEEEEe--
Q 008820 410 SDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW--RND----KFMKSMQTHKG---------SVFAVFL-- 472 (552)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw--d~~----~~~~~~~~h~~---------~v~~v~~-- 472 (552)
++.....+.....-...+.++++-|++.-.++++-||.|.+= |.. +....++.|.. +|.+++|
T Consensus 163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence 987654433332223333445667788889999999999874 433 23445666653 6788887
Q ss_pred cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-C-eEEEEeC
Q 008820 473 EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-G-KLFVGCA 527 (552)
Q Consensus 473 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~-~l~s~s~ 527 (552)
--+.|+||+.||.|.+||+.+.+....+... ...|.+++|+. + .||+|+.
T Consensus 243 ~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~-----~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 243 IHGTFATGGSDGIVNIWDLFNRKRLKQLAKY-----ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ccceEEecCCCceEEEccCcchhhhhhccCC-----CCceEEEEeccCCCeEEEEec
Confidence 5668999999999999999887665554432 45689999993 3 4777663
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=202.78 Aligned_cols=270 Identities=16% Similarity=0.209 Sum_probs=206.3
Q ss_pred ccccceeeecCcceEEEeeCCCeEEEEEeec--------------CccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCe
Q 008820 220 ADIDQARAAGGVKDLVNGLSKGNVKFKDLQG--------------HRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS 283 (552)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------------H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~ 283 (552)
..+.+.++.+.+.++++++.+..+++|+|.| ....|++++|+ ++.|+..+.....+|+|-....
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~ 247 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFE 247 (641)
T ss_pred eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCce
Confidence 4577888889999999999999999999876 23479999999 8888888888899999965444
Q ss_pred EEEE------------EeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccc-cccccCCCceeeeEEEEee
Q 008820 284 HVHT------------FKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPL-KKWNEEKDWRYSGIHALTT 350 (552)
Q Consensus 284 ~~~~------------~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 350 (552)
.... -+||...+++.+|+|.....+++++.||++++||++..+....+ +.............++|++
T Consensus 248 ~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr 327 (641)
T KOG0772|consen 248 IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR 327 (641)
T ss_pred eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC
Confidence 3322 35799999999999999999999999999999999876543332 2222222224445678999
Q ss_pred CCCEEEEeeCCCcEEEEECCCCc--ee-EEecCCCC--CeEEEEEe--CCEEEEEeCCCcEEEEECCCCc-eeEEEecCC
Q 008820 351 SGRYLYTGSGDRTIKAWSLLDGT--LS-CTMSGHKS--AVSTLAVC--NGVLYSGSRDGTIRLWSLSDHS-LLTVLEEDS 422 (552)
Q Consensus 351 ~~~~l~sgs~dg~i~iwd~~~~~--~~-~~~~~h~~--~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~ 422 (552)
+++.|++|..||+|.+|+..+.. +. ..-.+|.. .|+||.|+ +++|++-+.|+++++||+++.+ ++.....-.
T Consensus 328 dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~ 407 (641)
T KOG0772|consen 328 DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLP 407 (641)
T ss_pred CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCC
Confidence 99999999999999999975332 22 23356777 89999999 5599999999999999999865 444443322
Q ss_pred CCceEEEEEEcCCCCEEEEEEC------CCcEEEEeCCc--ceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEE
Q 008820 423 SGAVSSVLSLTAVQHTLVVSHE------SGSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQ 489 (552)
Q Consensus 423 ~~~~~~~~~~s~~~~~l~~g~~------dg~i~iwd~~~--~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iw 489 (552)
......-++|||+.++|++|.. .|++++||..+ .+..+......|..+.| .-+.|+.|+.||++++|
T Consensus 408 t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 408 TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 2222223699999999999864 57899999665 34555556778888888 44568888889999986
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-24 Score=217.13 Aligned_cols=281 Identities=19% Similarity=0.204 Sum_probs=216.4
Q ss_pred CccceEEEEEc--CCEEEEEe--CCCcEEEEeCCC------------CeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCC
Q 008820 251 HRDCVTGLAVG--GGFLFSSS--FDKSIHVWSLKD------------FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSG 314 (552)
Q Consensus 251 H~~~V~~l~~s--~~~l~s~s--~dg~I~iwd~~~------------~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d 314 (552)
+...|.++..+ +..++||+ .|+.++||+.+. .+.+.++..|.+.|+|+.|+|++. +||+|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~-~lAsGSDD 90 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS-YLASGSDD 90 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC-eEeeccCc
Confidence 35568899998 99999999 999999998642 345667788999999999999776 77999999
Q ss_pred CcEEEEeCCCCCCC---------------ccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEec
Q 008820 315 GGIFVWSFSFPLGH---------------EPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMS 379 (552)
Q Consensus 315 g~i~vwd~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 379 (552)
+.|.+|+....... +.+..+.+|... . .-.+++|++.++++++.|++|.+||..+.+.+..++
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~D-V-~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSD-V-LDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCc-c-ceeccCCCccEEEEecccceEEEEccccceeeeeee
Confidence 99999998731000 011222222221 1 123677889999999999999999999999999999
Q ss_pred CCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCC----CceEEEEEEcCCCCEEEEEEC----CCcEE
Q 008820 380 GHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS----GAVSSVLSLTAVQHTLVVSHE----SGSIK 449 (552)
Q Consensus 380 ~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~l~~g~~----dg~i~ 449 (552)
+|.+.|..+.|+ +.+|++-+.|++|++|++.+....+.+..+.. ......+.|+|||.+|++... -.++.
T Consensus 169 ~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 169 GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 999999999999 67999999999999999887777766654322 223334789999999998643 34677
Q ss_pred EEeCC--cceeeeecccceEEEEEec-------CC------------EEEEEeCCCeEEEEecCCCeeeeeeccCCCccc
Q 008820 450 VWRND--KFMKSMQTHKGSVFAVFLE-------GK------------WLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPC 508 (552)
Q Consensus 450 iwd~~--~~~~~~~~h~~~v~~v~~~-------~~------------~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 508 (552)
|.+-+ +.-..+-+|.+++.++.|+ .+ .+|+||.|++|-||.....+........ .
T Consensus 249 IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l----f 324 (942)
T KOG0973|consen 249 IIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL----F 324 (942)
T ss_pred EEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh----h
Confidence 77643 4567889999999999861 12 6789999999999998655443332222 1
Q ss_pred CcceEEEEEeC-Ce-EEEEeCCCeEEEEEecC
Q 008820 509 GSVITALLYWQ-GK-LFVGCADRTVKIALCNR 538 (552)
Q Consensus 509 ~~~v~~l~~~~-~~-l~s~s~Dg~v~iw~~~~ 538 (552)
...|.+++|++ |. |+.+|.||+|.+..+++
T Consensus 325 ~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 325 NKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred cCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 66799999995 44 99999999999999874
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-24 Score=199.30 Aligned_cols=283 Identities=16% Similarity=0.253 Sum_probs=201.2
Q ss_pred EEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCC----eEEEEEe-CCCCCeEEEEEecCCCCEEEEEcCCCcEE
Q 008820 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF----SHVHTFK-GHDHKVMAVVYVDEDQPLCISGDSGGGIF 318 (552)
Q Consensus 246 ~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~----~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg~i~ 318 (552)
..|.+|+..|+++++. |..|+|||.|.+|++||+... +..+.+. .....|.++.|++.++.+ ++.+.....+
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~i-Lvvsg~aqak 239 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQI-LVVSGSAQAK 239 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeE-EEEecCccee
Confidence 3488999999999998 999999999999999998743 2223332 344579999999987755 4455567788
Q ss_pred EEeCCCCCCCcc------ccccccCCCceeeeEE--EEeeCCC-EEEEeeCCCcEEEEECCCCce-eEEe-----cCCCC
Q 008820 319 VWSFSFPLGHEP------LKKWNEEKDWRYSGIH--ALTTSGR-YLYTGSGDRTIKAWSLLDGTL-SCTM-----SGHKS 383 (552)
Q Consensus 319 vwd~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~~~~-~l~sgs~dg~i~iwd~~~~~~-~~~~-----~~h~~ 383 (552)
++|-+....... +......+ .|...+. +|+|..+ .+++++.||++++||+++.+. ...+ .+..-
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTK-GHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTK-GHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccC-CceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 888663322221 11222111 2444444 5666544 899999999999999986543 2222 23345
Q ss_pred CeEEEEEe-C-CEEEEEeCCCcEEEEECCCCc--ee-EEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCccee
Q 008820 384 AVSTLAVC-N-GVLYSGSRDGTIRLWSLSDHS--LL-TVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMK 458 (552)
Q Consensus 384 ~v~~l~~~-~-~~l~s~~~dg~i~iwd~~~~~--~~-~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~ 458 (552)
++++++|+ + ..|++|+.||.|.+||..+.. +. ..-..|..+.-.+++.||++|++|++-+.|+++++||+++..+
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence 78899999 4 489999999999999985532 23 3334454544555689999999999999999999999886444
Q ss_pred ee---ec----ccceEEEEEecCCEEEEEe------CCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEE
Q 008820 459 SM---QT----HKGSVFAVFLEGKWLFTGG------WDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLF 523 (552)
Q Consensus 459 ~~---~~----h~~~v~~v~~~~~~l~sgs------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~ 523 (552)
.+ .+ ....=.+++|+.++|++|+ ..|++.+||..+-.....+... ...|..+.|+| ++++
T Consensus 399 pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-----~aSvv~~~WhpkLNQi~ 473 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-----TASVVRCLWHPKLNQIF 473 (641)
T ss_pred chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-----CceEEEEeecchhhhee
Confidence 33 22 2223345677999999986 3478999998887665554432 55688899998 5699
Q ss_pred EEeCCCeEEEEE
Q 008820 524 VGCADRTVKIAL 535 (552)
Q Consensus 524 s~s~Dg~v~iw~ 535 (552)
.|+.||.++++-
T Consensus 474 ~gsgdG~~~vyY 485 (641)
T KOG0772|consen 474 AGSGDGTAHVYY 485 (641)
T ss_pred eecCCCceEEEE
Confidence 999999999974
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-24 Score=206.78 Aligned_cols=244 Identities=27% Similarity=0.432 Sum_probs=199.2
Q ss_pred eEEEeeCCCeEEEEE-----------eecCccceEE-EEEc---CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEE
Q 008820 233 DLVNGLSKGNVKFKD-----------LQGHRDCVTG-LAVG---GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMA 297 (552)
Q Consensus 233 ~~~~~~~~~~~~~~~-----------l~~H~~~V~~-l~~s---~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~ 297 (552)
.+++++.++++++|. +.+|.+.|.. ++|. +..+++|+.|.+|.+|......++.++++|...|.+
T Consensus 27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ 106 (745)
T KOG0301|consen 27 CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCS 106 (745)
T ss_pred EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceee
Confidence 566777788888776 5668888877 7776 567999999999999999999999999999999999
Q ss_pred EEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEee-CCCEEEEeeCCCcEEEEECCCCceeE
Q 008820 298 VVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAWSLLDGTLSC 376 (552)
Q Consensus 298 v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~ 376 (552)
+....++. +++||.|.++++|-.... ...+.+|.. .+.++.. ..+.++||+.|.+|++|.- ++.++
T Consensus 107 ls~~~~~~--~iSgSWD~TakvW~~~~l-----~~~l~gH~a----sVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~ 173 (745)
T KOG0301|consen 107 LSIGEDGT--LISGSWDSTAKVWRIGEL-----VYSLQGHTA----SVWAVASLPENTYVTGSADKTIKLWKG--GTLLK 173 (745)
T ss_pred eecCCcCc--eEecccccceEEecchhh-----hcccCCcch----heeeeeecCCCcEEeccCcceeeeccC--Cchhh
Confidence 98755443 799999999999987632 222333332 2222221 2238999999999999974 88999
Q ss_pred EecCCCCCeEEEEEeCC-EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc
Q 008820 377 TMSGHKSAVSTLAVCNG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK 455 (552)
Q Consensus 377 ~~~~h~~~v~~l~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 455 (552)
+|.+|.+-|..+++-++ .+++++.||.|+.|++ +|+++....+|. ..+.+ +....++..++++++|++++||+...
T Consensus 174 tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ght-n~vYs-is~~~~~~~Ivs~gEDrtlriW~~~e 250 (745)
T KOG0301|consen 174 TFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHT-NFVYS-ISMALSDGLIVSTGEDRTLRIWKKDE 250 (745)
T ss_pred hhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccc-eEEEE-EEecCCCCeEEEecCCceEEEeecCc
Confidence 99999999999999954 9999999999999999 788888887763 44554 46677888999999999999999999
Q ss_pred ceeeeecccceEEEEEe-cCCEEEEEeCCCeEEEEecC
Q 008820 456 FMKSMQTHKGSVFAVFL-EGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 456 ~~~~~~~h~~~v~~v~~-~~~~l~sgs~dg~i~iwd~~ 492 (552)
+.+.+.-....|+++.. ...-+++|+.||.||||...
T Consensus 251 ~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 251 CVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred eEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 99999888889999876 55667888889999999876
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=193.22 Aligned_cols=273 Identities=20% Similarity=0.300 Sum_probs=215.5
Q ss_pred cceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcc
Q 008820 253 DCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP 330 (552)
Q Consensus 253 ~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 330 (552)
..|.++... ...++||+.|.++.++|..+.+.+.+++||...|+.+.++++.. .+++++.|-.|++|..........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~-~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLD-TVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchh-heeecCCcceEEeeccccccCccc
Confidence 356667666 48999999999999999999999999999999999999998654 679999999999999886654444
Q ss_pred ccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecC--CCCCeEEEEEe-CC-EEEEEeCCCcEEE
Q 008820 331 LKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSG--HKSAVSTLAVC-NG-VLYSGSRDGTIRL 406 (552)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~-~~-~l~s~~~dg~i~i 406 (552)
...+... ..-...++.|+||++++.||+..+.|++++..+..... ..-.+++.+|+ |+ .|.+|..||.+++
T Consensus 299 ~~~h~~~-----V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki 373 (506)
T KOG0289|consen 299 SRPHEEP-----VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI 373 (506)
T ss_pred ccccccc-----ceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence 4433322 12346788999999999999999999999998776653 23458999999 55 7889999999999
Q ss_pred EECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcce--eeeecc-cceEEEEEe--cCCEEEEEe
Q 008820 407 WSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFM--KSMQTH-KGSVFAVFL--EGKWLFTGG 481 (552)
Q Consensus 407 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~h-~~~v~~v~~--~~~~l~sgs 481 (552)
||+.++..+..|.+| .+.+.. +.|+.+|.+|+++++|+.|++||+++.. +++... ...+.+++| .|.+|+.++
T Consensus 374 wdlks~~~~a~Fpgh-t~~vk~-i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 374 WDLKSQTNVAKFPGH-TGPVKA-ISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred EEcCCccccccCCCC-CCceeE-EEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence 999999999999885 567776 6999999999999999999999998743 333322 236777777 799999998
Q ss_pred CCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEEeCCCeEEEEEe
Q 008820 482 WDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGCADRTVKIALC 536 (552)
Q Consensus 482 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~Dg~v~iw~~ 536 (552)
.|=.|++++-.+........... +.+..+.+.|.. ..++++|.|..++++.+
T Consensus 452 ~~l~Vy~~~k~~k~W~~~~~~~~---~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 452 SDLQVYICKKKTKSWTEIKELAD---HSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeEEEEEecccccceeeehhhh---cccccceeeecccceEEeeccchhheEEeec
Confidence 88778887755544433222221 245678888884 34889999999888764
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=183.65 Aligned_cols=266 Identities=17% Similarity=0.213 Sum_probs=191.2
Q ss_pred cCccceEEEEEc---CCEEEEEeCCCcEEEEeCCC-CeEE-EEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCC
Q 008820 250 GHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKD-FSHV-HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF 324 (552)
Q Consensus 250 ~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~-~~~~-~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 324 (552)
.-++.|.+++|+ ..+++.+|.|++||+|+++. |..+ +....|.++|.+++|+.++ ..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEccC
Confidence 346789999999 67788999999999999986 3332 4456799999999999877 5779999999999999998
Q ss_pred CCCCccccccccCCCceeeeEEEEeeCC-CEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEeCCCc
Q 008820 325 PLGHEPLKKWNEEKDWRYSGIHALTTSG-RYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGT 403 (552)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~ 403 (552)
++. ..+.. |.. ....+..+..-. ..|++||.|++|+.||.++..++.++. -...++++..-..+++.+..+..
T Consensus 104 ~Q~-~~v~~---Hd~-pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~~pm~vVata~r~ 177 (347)
T KOG0647|consen 104 GQV-SQVAA---HDA-PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVLYPMAVVATAERH 177 (347)
T ss_pred CCe-eeeee---ccc-ceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhccCceeEEEecCCc
Confidence 732 22222 211 222333333222 389999999999999999999998887 45668888877779999999999
Q ss_pred EEEEECCCCceeE-EEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC----cceeeeecccc---------eEEE
Q 008820 404 IRLWSLSDHSLLT-VLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND----KFMKSMQTHKG---------SVFA 469 (552)
Q Consensus 404 i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~----~~~~~~~~h~~---------~v~~ 469 (552)
|.+|+++++.... ......+-.+.+ ++.-.+....+.|+-.|.+.|..+. +.-.+++.|.. .|++
T Consensus 178 i~vynL~n~~te~k~~~SpLk~Q~R~-va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs 256 (347)
T KOG0647|consen 178 IAVYNLENPPTEFKRIESPLKWQTRC-VACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS 256 (347)
T ss_pred EEEEEcCCCcchhhhhcCcccceeeE-EEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence 9999998765432 223222233344 5666666667999999999998643 33446677763 4555
Q ss_pred EEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEe-CCe--EEEEeCC
Q 008820 470 VFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QGK--LFVGCAD 528 (552)
Q Consensus 470 v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~--l~s~s~D 528 (552)
++| .-..|+|++.||+..+||-........... +..+|++.+|+ +|. .+..+.|
T Consensus 257 i~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~-----~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 257 IAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSET-----HPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred eEeecccceEEEecCCceEEEecchhhhhhhccCc-----CCCccceeEecCCCCEEEEEeecc
Confidence 666 677899999999999999876544333222 36779999998 444 2234444
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-24 Score=197.84 Aligned_cols=253 Identities=16% Similarity=0.244 Sum_probs=199.2
Q ss_pred eCCCeEEEEEeecCccceEEEEEc---CCEEEEEeCCCcEEEEeCCCC----------eEEEEEeCCCCCeEEEEEecCC
Q 008820 238 LSKGNVKFKDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDF----------SHVHTFKGHDHKVMAVVYVDED 304 (552)
Q Consensus 238 ~~~~~~~~~~l~~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~~----------~~~~~~~~h~~~v~~v~~~~~~ 304 (552)
...+.+++...--|.+.|+.+.+- ...+++.+..+.|.|||..+. .+-.++.+|...-++++|++..
T Consensus 110 ~~~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~ 189 (422)
T KOG0264|consen 110 AVSGKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQ 189 (422)
T ss_pred ccccceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccccc
Confidence 345677777788899999999987 788899999999999998642 2223788999988999999999
Q ss_pred CCEEEEEcCCCcEEEEeCCCCCCC----ccccccccCCCceeeeEEEEee-CCCEEEEeeCCCcEEEEECC--CCceeEE
Q 008820 305 QPLCISGDSGGGIFVWSFSFPLGH----EPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAWSLL--DGTLSCT 377 (552)
Q Consensus 305 ~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sgs~dg~i~iwd~~--~~~~~~~ 377 (552)
...+++++.|++|++||+...... .+...+..+.. ....+ +|++ +.+.|++++.|+.+.|||++ +.++...
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~-~VeDV-~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~ 267 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHED-VVEDV-AWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHS 267 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCc-ceehh-hccccchhhheeecCCCeEEEEEcCCCCCCCccc
Confidence 999999999999999999865542 22223333322 22222 4444 45589999999999999999 5667778
Q ss_pred ecCCCCCeEEEEEe---CCEEEEEeCCCcEEEEECCCCc-eeEEEecCCCCceEEEEEEcCCC-CEEEEEECCCcEEEEe
Q 008820 378 MSGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHS-LLTVLEEDSSGAVSSVLSLTAVQ-HTLVVSHESGSIKVWR 452 (552)
Q Consensus 378 ~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iwd 452 (552)
..+|.++|+|++|+ +..||+||.|++|++||+|+.+ +++++..| ...+.. +.|+|+. ..|++++.|+.+.+||
T Consensus 268 ~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H-~dev~~-V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 268 VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH-EDEVFQ-VEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC-CcceEE-EEeCCCCCceeEecccCCcEEEEe
Confidence 88999999999999 3499999999999999999865 57777766 455555 5888875 5788889999999999
Q ss_pred CCc----------------ceeeeecccceEEEEEe---cCCEEEEEeCCCeEEEEecCCC
Q 008820 453 NDK----------------FMKSMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQELAGD 494 (552)
Q Consensus 453 ~~~----------------~~~~~~~h~~~v~~v~~---~~~~l~sgs~dg~i~iwd~~~~ 494 (552)
+.+ ++..-.||+..|..++| ..-.++|.+.|+.+.||++...
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 642 23455789999999998 4557889999999999998753
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=200.61 Aligned_cols=273 Identities=17% Similarity=0.309 Sum_probs=214.9
Q ss_pred cCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCC---eEEEEEe--CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q 008820 250 GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF---SHVHTFK--GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (552)
Q Consensus 250 ~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~---~~~~~~~--~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 322 (552)
.|..-|.++.++ .++++||+. |.|+|||+... .++..+. .....|.++..+|++. .|++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr-tLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR-TLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc-eEEeccccceeeeeec
Confidence 588888889998 889999985 57999998642 2333333 2456788999999776 5577888999999999
Q ss_pred CCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeC
Q 008820 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSR 400 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~ 400 (552)
..+............ ..+...++++|.+..+++..||.|.|||+.+...++.|.+|.+.+.||.++ ++ .|.+|+.
T Consensus 495 AapTprikaeltssa---paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSA---PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGL 571 (705)
T ss_pred cCCCcchhhhcCCcc---hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCC
Confidence 876543222211111 222345788999999999999999999999999999999999999999999 44 9999999
Q ss_pred CCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc-ceeeeecccceEEEEEe--cCCEE
Q 008820 401 DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK-FMKSMQTHKGSVFAVFL--EGKWL 477 (552)
Q Consensus 401 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~h~~~v~~v~~--~~~~l 477 (552)
|++||.||+++++.+...... ..+.+ +.++|++.++++|-.++.+.+....+ ....+..|...|.++.| .|+++
T Consensus 572 DntvRcWDlregrqlqqhdF~--SQIfS-Lg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 572 DNTVRCWDLREGRQLQQHDFS--SQIFS-LGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred ccceeehhhhhhhhhhhhhhh--hhhee-cccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCcee
Confidence 999999999999877655443 33444 68899999999999999999998654 45677889999999988 89999
Q ss_pred EEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEe--CCeEEEEeCCCeEEEEEe
Q 008820 478 FTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW--QGKLFVGCADRTVKIALC 536 (552)
Q Consensus 478 ~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~Dg~v~iw~~ 536 (552)
++.+.|+.+..|...-+........ .+.|.++..+ +.+++||+.|..-.+|.+
T Consensus 649 vStGkDnlLnawrtPyGasiFqskE------~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPYGASIFQSKE------SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eecCchhhhhhccCccccceeeccc------cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999999876644443322 4557666666 556999999998888875
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-22 Score=178.78 Aligned_cols=269 Identities=16% Similarity=0.203 Sum_probs=218.5
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeC--CCcEEEEeCCCCeE
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSF--DKSIHVWSLKDFSH 284 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~--dg~I~iwd~~~~~~ 284 (552)
....+.++.++..+..+++...+..+++++ +..++-.|..++|. ...++.++. |.+||.-++.+.+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 345578889999999999988887777776 34455578888886 667777766 88999999999999
Q ss_pred EEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcE
Q 008820 285 VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTI 364 (552)
Q Consensus 285 ~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i 364 (552)
++.|.||...|++++.+|-+ ..+++++.|++|++||++..++...+.. ...++.++.|.|-++|++.....|
T Consensus 93 lRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~-------~~~pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNL-------SGRPIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred EEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEec-------CCCcceeECCCCcEEEEecCCCeE
Confidence 99999999999999999976 5779999999999999997665544433 223577999999999999988899
Q ss_pred EEEECCCC--ceeEEec---CCCCCeEEEEEe-CC-EEEEEeCCCcEEEEECCCCceeEEEecCCCCc-eEEEEEEcCCC
Q 008820 365 KAWSLLDG--TLSCTMS---GHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGA-VSSVLSLTAVQ 436 (552)
Q Consensus 365 ~iwd~~~~--~~~~~~~---~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~s~~~ 436 (552)
++||++.- .+-.++. +.....+.|.|+ ++ .++.+...+.+++.|.-+|..+.++..+.... .....+|+||+
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds 244 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS 244 (311)
T ss_pred EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence 99999853 3444443 346788999999 44 88889999999999999999998887764333 23336899999
Q ss_pred CEEEEEECCCcEEEEeCC--cceeeeec-ccceEEEEEecCCEEEEEeCCCeEEEEecCCC
Q 008820 437 HTLVVSHESGSIKVWRND--KFMKSMQT-HKGSVFAVFLEGKWLFTGGWDKTVSVQELAGD 494 (552)
Q Consensus 437 ~~l~~g~~dg~i~iwd~~--~~~~~~~~-h~~~v~~v~~~~~~l~sgs~dg~i~iwd~~~~ 494 (552)
+++++|+.||+|.+|+.. ..+..+.+ +.+++.++.|+.++....+.+..+.+|=....
T Consensus 245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 245 KFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPDED 305 (311)
T ss_pred cEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecccc
Confidence 999999999999999964 46667777 78899999999998888888899999966543
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=182.52 Aligned_cols=277 Identities=21% Similarity=0.323 Sum_probs=199.6
Q ss_pred ecCccceEEEEEc---CCEEEEEeCCCcEEEEeCCCCe----------EEEE-----EeCCCCCeEEEEEecCCCCEEEE
Q 008820 249 QGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFS----------HVHT-----FKGHDHKVMAVVYVDEDQPLCIS 310 (552)
Q Consensus 249 ~~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~~~----------~~~~-----~~~h~~~v~~v~~~~~~~~~l~s 310 (552)
.-|.+.|+++... |+++++|+.||.|.+||+++.. .... -.+|.-.|.++.|.|-+.-++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 4688999999998 9999999999999999997532 1111 13578899999999999999999
Q ss_pred EcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEee---CCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEE
Q 008820 311 GDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT---SGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVST 387 (552)
Q Consensus 311 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 387 (552)
++.|.++++||.++.+....+.... ... -.+++| .-.++++|..|-.|++.|+.+|...+++.+|.+.|.+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~---~VY---shamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEG---KVY---SHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLA 193 (397)
T ss_pred ccccceEEEeecccceeeEEeecCc---eee---hhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEE
Confidence 9999999999998765433332211 100 123333 2348899999999999999999999999999999999
Q ss_pred EEEeCC---EEEEEeCCCcEEEEECCCC-ceeEEEecC-------------CCCceEEEEEEcCCCCEEEEEECCCcEEE
Q 008820 388 LAVCNG---VLYSGSRDGTIRLWSLSDH-SLLTVLEED-------------SSGAVSSVLSLTAVQHTLVVSHESGSIKV 450 (552)
Q Consensus 388 l~~~~~---~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-------------~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 450 (552)
+.|++. .|++|+.||.|++||++.. .+...+..+ +.+.+.. ++|+.++.++++++.|..+++
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvng-la~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNG-LAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeee-eeecccchhhhhccCccceEE
Confidence 999933 8899999999999999865 344444333 2334444 689999999999999999999
Q ss_pred EeCCcceeeeec-----ccceE---EEE-EecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCe
Q 008820 451 WRNDKFMKSMQT-----HKGSV---FAV-FLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK 521 (552)
Q Consensus 451 wd~~~~~~~~~~-----h~~~v---~~v-~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 521 (552)
|+..+...++.. |...+ .-+ +.+...++---.++.+.++++-.+........+ ...+.+.++.++.
T Consensus 273 wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h-----~k~i~c~~~~~~f 347 (397)
T KOG4283|consen 273 WNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH-----LKRINCAAYRPDF 347 (397)
T ss_pred eecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecc-----cceeeEEeecCch
Confidence 986543222221 11100 001 123333333344577777777666555444432 4457777777764
Q ss_pred --EEEEeCCCeEEEEEec
Q 008820 522 --LFVGCADRTVKIALCN 537 (552)
Q Consensus 522 --l~s~s~Dg~v~iw~~~ 537 (552)
..+|..|+.|..|...
T Consensus 348 q~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 348 EQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred hhhhccccCCcccccccc
Confidence 9999999999999874
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9e-24 Score=196.00 Aligned_cols=242 Identities=17% Similarity=0.273 Sum_probs=186.2
Q ss_pred CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcccc-------ccccCCCceeeeEEEEeeCCC-EEEEeeCC
Q 008820 290 GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLK-------KWNEEKDWRYSGIHALTTSGR-YLYTGSGD 361 (552)
Q Consensus 290 ~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~l~sgs~d 361 (552)
.|.+.|+.+.+.|++..++++.+..+.+.|||........... .+.+|... ..-.++++... .+++|+.|
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e--g~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE--GYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccc--ccccccccccceeEeeccCC
Confidence 4999999999999999999999999999999987543222211 22233321 11124444333 89999999
Q ss_pred CcEEEEECCCC-------ceeEEecCCCCCeEEEEEe---CCEEEEEeCCCcEEEEECCC--CceeEEEecCCCCceEEE
Q 008820 362 RTIKAWSLLDG-------TLSCTMSGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSD--HSLLTVLEEDSSGAVSSV 429 (552)
Q Consensus 362 g~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~ 429 (552)
++|++||+... .+...+.+|...|..++|+ .+++++++.|+.+.|||+|+ .++.+....| .+.+.+
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah-~~~vn~- 277 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH-SAEVNC- 277 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccccc-CCceeE-
Confidence 99999999743 2355678999999999999 55999999999999999995 4445555544 556666
Q ss_pred EEEcC-CCCEEEEEECCCcEEEEeCCc---ceeeeecccceEEEEEe---cCCEEEEEeCCCeEEEEecCCCeeee----
Q 008820 430 LSLTA-VQHTLVVSHESGSIKVWRNDK---FMKSMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQELAGDEFEE---- 498 (552)
Q Consensus 430 ~~~s~-~~~~l~~g~~dg~i~iwd~~~---~~~~~~~h~~~v~~v~~---~~~~l~sgs~dg~i~iwd~~~~~~~~---- 498 (552)
++|+| ++..||+|+.|++|.+||+++ ++.++.+|...|.++.| ....|++++.|+.+.+||+..-....
T Consensus 278 ~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ed 357 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPED 357 (422)
T ss_pred EEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhh
Confidence 57776 456788999999999999764 67788999999999988 67799999999999999997422211
Q ss_pred --------eeccCCCcccCcceEEEEEeCCe---EEEEeCCCeEEEEEecC
Q 008820 499 --------DVIPTGAIPCGSVITALLYWQGK---LFVGCADRTVKIALCNR 538 (552)
Q Consensus 499 --------~~~~~~~~~~~~~v~~l~~~~~~---l~s~s~Dg~v~iw~~~~ 538 (552)
.+.+.+ |...|+.+.|+|.. +++++.|+.+.||+...
T Consensus 358 a~dgppEllF~HgG---H~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 358 AEDGPPELLFIHGG---HTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred hccCCcceeEEecC---cccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 233433 37779999999754 99999999999999873
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.6e-24 Score=180.54 Aligned_cols=245 Identities=18% Similarity=0.193 Sum_probs=182.0
Q ss_pred eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCC---eEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q 008820 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF---SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (552)
Q Consensus 248 l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~---~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 322 (552)
..+|++.|..+... |++|+||+.|++|+|+...+. +++.++.||.++|..++|....
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk------------------ 68 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPK------------------ 68 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccc------------------
Confidence 35799999988776 999999999999999998753 5688999999999999995311
Q ss_pred CCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCc--eeEEecCCCCCeEEEEEeCC----EEE
Q 008820 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT--LSCTMSGHKSAVSTLAVCNG----VLY 396 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~----~l~ 396 (552)
.|+.|++++.||.|.||.-.+++ .......|...|++++|.+. .|+
T Consensus 69 ----------------------------~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~La 120 (299)
T KOG1332|consen 69 ----------------------------FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLA 120 (299)
T ss_pred ----------------------------cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEE
Confidence 23456666666666666655553 23345679999999999832 899
Q ss_pred EEeCCCcEEEEECCCC--ceeEEEecCCCCceEEEEEEcCC---C-----------CEEEEEECCCcEEEEeCCc----c
Q 008820 397 SGSRDGTIRLWSLSDH--SLLTVLEEDSSGAVSSVLSLTAV---Q-----------HTLVVSHESGSIKVWRNDK----F 456 (552)
Q Consensus 397 s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~s~~---~-----------~~l~~g~~dg~i~iwd~~~----~ 456 (552)
+++.||.|.+.+.++. -....+...|.-.+.+ +++.|. | +.|++|+.|..|+||+... .
T Consensus 121 casSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvns-Vswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~ 199 (299)
T KOG1332|consen 121 CASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNS-VSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL 199 (299)
T ss_pred EeeCCCcEEEEEEcCCCCccchhhhhccccccce-eeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhh
Confidence 9999999999998764 2233333333334444 466654 3 5699999999999998543 4
Q ss_pred eeeeecccceEEEEEe------cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEe--CCeEEEEeCC
Q 008820 457 MKSMQTHKGSVFAVFL------EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW--QGKLFVGCAD 528 (552)
Q Consensus 457 ~~~~~~h~~~v~~v~~------~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~D 528 (552)
.+.+.+|...|+.++| --.+|+++|.||++.||..+............. ....+..+.|+ .+.|++++.|
T Consensus 200 e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~--f~~~~w~vSWS~sGn~LaVs~Gd 277 (299)
T KOG1332|consen 200 ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE--FPDVVWRVSWSLSGNILAVSGGD 277 (299)
T ss_pred hhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc--CCcceEEEEEeccccEEEEecCC
Confidence 5568999999999886 245899999999999998773322222222111 26678999998 4669999999
Q ss_pred CeEEEEEecCCcc
Q 008820 529 RTVKIALCNRQIP 541 (552)
Q Consensus 529 g~v~iw~~~~~~~ 541 (552)
+.|.+|.-+.+++
T Consensus 278 Nkvtlwke~~~Gk 290 (299)
T KOG1332|consen 278 NKVTLWKENVDGK 290 (299)
T ss_pred cEEEEEEeCCCCc
Confidence 9999999876554
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-23 Score=189.06 Aligned_cols=280 Identities=10% Similarity=0.183 Sum_probs=221.1
Q ss_pred ccceEEEEEc--CCEEEEEeCCCcEEEEeCCC--CeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCC
Q 008820 252 RDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD--FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLG 327 (552)
Q Consensus 252 ~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~--~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 327 (552)
.+.|+++.|+ ...+++|+.|++++||.++. ...++.+.-...+|.+.+|.|+|...+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4689999999 78999999999999998753 3456666667789999999999988899999999999999987653
Q ss_pred CccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeCCCcEE
Q 008820 328 HEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGTIR 405 (552)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i~ 405 (552)
.+.- ...+.. .....-..+++++++|+..+..|.|.+....+++.+..++ -.+.|..++|+ ++ .|++++.+|.|.
T Consensus 293 ~k~~-~~~g~e-~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 293 TKLK-PPYGVE-EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred cccc-CCCCcc-cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEE
Confidence 3322 222221 1222345778999999999999999999999999998887 56789999999 44 888888999999
Q ss_pred EEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--------cceeeeecccceEEEEEe--cCC
Q 008820 406 LWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--------KFMKSMQTHKGSVFAVFL--EGK 475 (552)
Q Consensus 406 iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--------~~~~~~~~h~~~v~~v~~--~~~ 475 (552)
+||+++..+++.+..... .....++.++++.++|+|+..|.|.|||.. +++..+..-...|+++.| |.+
T Consensus 370 v~nl~~~~~~~rf~D~G~-v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVDDGS-VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ 448 (514)
T ss_pred EEecCCcceEEEEeecCc-cceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence 999999999999987643 334447889999999999999999999843 466667777788888888 788
Q ss_pred EEEEEe--CCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEEeCCCeEEEEEec
Q 008820 476 WLFTGG--WDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGCADRTVKIALCN 537 (552)
Q Consensus 476 ~l~sgs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~Dg~v~iw~~~ 537 (552)
.|+.+| .+..+++-.+.+-..-..+.... ..-+.|+|++|+| +.++.|..+|.|.+|.+.
T Consensus 449 iLAiaS~~~knalrLVHvPS~TVFsNfP~~n--~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 449 ILAIASRVKKNALRLVHVPSCTVFSNFPTSN--TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhhccccceEEEeccceeeeccCCCCC--CcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 887766 46788888877644333222221 1245699999997 569999999999999985
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-23 Score=180.60 Aligned_cols=268 Identities=18% Similarity=0.226 Sum_probs=203.1
Q ss_pred ccccceeeecCcceEEEeeCCCeEEEEE---------------------------eecCccceEEEEEc--CCEEEEEeC
Q 008820 220 ADIDQARAAGGVKDLVNGLSKGNVKFKD---------------------------LQGHRDCVTGLAVG--GGFLFSSSF 270 (552)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------l~~H~~~V~~l~~s--~~~l~s~s~ 270 (552)
.+...+++++++..+++++.+..+++.+ |-.|.+.|+++.|+ ...|++|+.
T Consensus 113 ~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~sr 192 (430)
T KOG0640|consen 113 SPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSR 192 (430)
T ss_pred cceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccC
Confidence 4466778888888888888777666544 55699999999999 899999999
Q ss_pred CCcEEEEeCCCCeEEEEEe--CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEE--
Q 008820 271 DKSIHVWSLKDFSHVHTFK--GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIH-- 346 (552)
Q Consensus 271 dg~I~iwd~~~~~~~~~~~--~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-- 346 (552)
|++|+++|+......+.++ ....+|.++.|+|.|+ +++.|..-.++++||+++.++-.....-.. +...+.
T Consensus 193 D~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~QcfvsanPd~q----ht~ai~~V 267 (430)
T KOG0640|consen 193 DNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFVSANPDDQ----HTGAITQV 267 (430)
T ss_pred CCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEeeecCcccc----cccceeEE
Confidence 9999999987543333222 2456899999999776 678888999999999997654333322111 223333
Q ss_pred EEeeCCCEEEEeeCCCcEEEEECCCCceeEEec-CCC-CCeEEEEEe-CC-EEEEEeCCCcEEEEECCCCceeEEEecCC
Q 008820 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMS-GHK-SAVSTLAVC-NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDS 422 (552)
Q Consensus 347 ~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~-~h~-~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 422 (552)
..++.++..++|+.||.|++||--+++++.++. .|. ..|.+..|. ++ ++++.+.|..+++|.+.+++++..+.+..
T Consensus 268 ~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg 347 (430)
T KOG0640|consen 268 RYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAG 347 (430)
T ss_pred EecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCC
Confidence 456678899999999999999999999999884 455 468888888 44 99999999999999999999999987652
Q ss_pred ---CCceEEEEEEcCCCCEEEEEEC-CCcEEEEeCCcce---eeeecccceEEEEE--ecCCEEEEEeCCCeEEEEecC
Q 008820 423 ---SGAVSSVLSLTAVQHTLVVSHE-SGSIKVWRNDKFM---KSMQTHKGSVFAVF--LEGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 423 ---~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~---~~~~~h~~~v~~v~--~~~~~l~sgs~dg~i~iwd~~ 492 (552)
.....+-..|+....+++.-.+ .+.+.-||.++.. ..-.+|.+.+..+. |.+..+.++|.|-.+++|--+
T Consensus 348 ~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 348 TTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred cccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 1111222456777777776544 5678999977532 22357999998885 588899999999999999643
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-22 Score=174.51 Aligned_cols=257 Identities=18% Similarity=0.222 Sum_probs=196.1
Q ss_pred CCCCCccccceeeecCc-ceEEEeeCCCeEEEEEeec-----------CccceEEEEEc--CCEEEEEeCCCcEEEEeCC
Q 008820 215 ENSDGADIDQARAAGGV-KDLVNGLSKGNVKFKDLQG-----------HRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK 280 (552)
Q Consensus 215 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~-----------H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~ 280 (552)
..++.+.|..+.|++.. ..++.++.++++++|+++. |.++|.+++|+ |..+++|+.|+.+++||+.
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence 34566678899999944 4455889999999999754 89999999999 9999999999999999999
Q ss_pred CCeEEEEEeCCCCCeEEEEEecCCC-CEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEee
Q 008820 281 DFSHVHTFKGHDHKVMAVVYVDEDQ-PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS 359 (552)
Q Consensus 281 ~~~~~~~~~~h~~~v~~v~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs 359 (552)
+++ ...+..|.++|.++.|.+... ..|++||.|++|+.||.+.......+.... .+.+...-...++++.
T Consensus 103 S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe--------RvYa~Dv~~pm~vVat 173 (347)
T KOG0647|consen 103 SGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE--------RVYAADVLYPMAVVAT 173 (347)
T ss_pred CCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc--------eeeehhccCceeEEEe
Confidence 984 556778999999999987443 478999999999999999654443333211 2344555556889999
Q ss_pred CCCcEEEEECCCCceeEEe--cCCCCCeEEEEEe-C-CEEEEEeCCCcEEEEECCCC--ceeEEEecCCC-----CceEE
Q 008820 360 GDRTIKAWSLLDGTLSCTM--SGHKSAVSTLAVC-N-GVLYSGSRDGTIRLWSLSDH--SLLTVLEEDSS-----GAVSS 428 (552)
Q Consensus 360 ~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~~-~-~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~-----~~~~~ 428 (552)
.+..|.+|+++++...... ..-.-.+.|++.. + +..+.|+-.|.+.+..+..+ +.-.+|+-|.. +.+..
T Consensus 174 a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 174 AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 9999999999876443221 1123457888877 3 36699999999999999876 33444554432 11222
Q ss_pred --EEEEcCCCCEEEEEECCCcEEEEe--CCcceeeeecccceEEEEEe--cCCEEEEE
Q 008820 429 --VLSLTAVQHTLVVSHESGSIKVWR--NDKFMKSMQTHKGSVFAVFL--EGKWLFTG 480 (552)
Q Consensus 429 --~~~~s~~~~~l~~g~~dg~i~iwd--~~~~~~~~~~h~~~v~~v~~--~~~~l~sg 480 (552)
.++|+|....|++.+.||+..+|| .+..++..+.|..+|++.+| +|.+++-+
T Consensus 254 VNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 268999999999999999999998 45677788889999999998 67766644
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=188.77 Aligned_cols=237 Identities=16% Similarity=0.274 Sum_probs=186.2
Q ss_pred eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCC
Q 008820 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFP 325 (552)
Q Consensus 248 l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~ 325 (552)
+.-.++.|.++.|- |++++.|...|.|+|+|.++...++.+.+|+.+|..+.|+|.++.++++|+.|+.+++||+.+.
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a 143 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA 143 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence 44567889999998 9999999999999999988777788899999999999999999999999999999999999976
Q ss_pred CCCccccccccCCCceeeeEEEEeeC-CCEEEEeeCCCcEEEEECCCC-ceeEEecCCCCCeEEEEEe-C-CEEEEEeCC
Q 008820 326 LGHEPLKKWNEEKDWRYSGIHALTTS-GRYLYTGSGDRTIKAWSLLDG-TLSCTMSGHKSAVSTLAVC-N-GVLYSGSRD 401 (552)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~-~-~~l~s~~~d 401 (552)
.. .....++.+. ..+.+++|. +..++||+.||.|++||.+.. ..+.++. |..+|..+.+- + +.+++++ .
T Consensus 144 ~v---~~~l~~htDY--VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-G 216 (487)
T KOG0310|consen 144 YV---QAELSGHTDY--VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-G 216 (487)
T ss_pred EE---EEEecCCcce--eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-C
Confidence 52 3344444432 223345554 458999999999999999977 5666665 99999999998 4 3666554 5
Q ss_pred CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeeecccceEEEEE--ecCCEE
Q 008820 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAVF--LEGKWL 477 (552)
Q Consensus 402 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~h~~~v~~v~--~~~~~l 477 (552)
..+++||+-+|..+......|...+++ +.+..++..|++|+-|+.|++||+.+ .+..+. ..++|.+++ ++++.+
T Consensus 217 n~vkVWDl~~G~qll~~~~~H~KtVTc-L~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~ 294 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQLLTSMFNHNKTVTC-LRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTV 294 (487)
T ss_pred CeEEEEEecCCceehhhhhcccceEEE-EEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceE
Confidence 689999999766554444433444555 78888999999999999999999654 334443 467887766 488999
Q ss_pred EEEeCCCeEEEEecCC
Q 008820 478 FTGGWDKTVSVQELAG 493 (552)
Q Consensus 478 ~sgs~dg~i~iwd~~~ 493 (552)
+.|-.||.+.+=+...
T Consensus 295 viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 295 VIGMSNGLVSIRRREV 310 (487)
T ss_pred EEecccceeeeehhhc
Confidence 9999999987765443
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-23 Score=191.60 Aligned_cols=242 Identities=20% Similarity=0.341 Sum_probs=195.9
Q ss_pred ccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCc
Q 008820 252 RDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHE 329 (552)
Q Consensus 252 ~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 329 (552)
.++|.+++-+ |.+|+.|+..|.|++|.+.+|+.+..+.+|-..|+++.|+.++. ++++|+.||.|.+|++.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs-~iiTgskDg~V~vW~l~------ 153 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGS-HIITGSKDGAVLVWLLT------ 153 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCc-EEEecCCCccEEEEEEE------
Confidence 4679999887 88888888999999999999999999999999999999988655 78999999999999864
Q ss_pred cccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-C---CEEEEEeCCCcEE
Q 008820 330 PLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-N---GVLYSGSRDGTIR 405 (552)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~---~~l~s~~~dg~i~ 405 (552)
.++++..|+ +-++.+.+..|.-+|+++... + .+++++|.|.+++
T Consensus 154 ------------------------~lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k 201 (476)
T KOG0646|consen 154 ------------------------DLVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIK 201 (476)
T ss_pred ------------------------eecccccCC--------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEE
Confidence 244455554 456788888999999999988 3 3999999999999
Q ss_pred EEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC------------------cceeeeecccc--
Q 008820 406 LWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND------------------KFMKSMQTHKG-- 465 (552)
Q Consensus 406 iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~------------------~~~~~~~~h~~-- 465 (552)
+||+..+..+.++..+ ..+.+ ++++|.++.+++|+.+|.|.+.++. .....+.+|.+
T Consensus 202 ~wdlS~g~LLlti~fp--~si~a-v~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~ 278 (476)
T KOG0646|consen 202 LWDLSLGVLLLTITFP--SSIKA-VALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENES 278 (476)
T ss_pred EEEeccceeeEEEecC--Cccee-EEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCc
Confidence 9999999998888764 23444 6999999999999999999988632 13456788988
Q ss_pred eEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEe---CCeEEEEeCCCeEEEEEecCCc
Q 008820 466 SVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW---QGKLFVGCADRTVKIALCNRQI 540 (552)
Q Consensus 466 ~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~---~~~l~s~s~Dg~v~iw~~~~~~ 540 (552)
.|+|++. ||..|++|+.||.|+|||+.+.++....... .++|+.+.+. ++.+..-.....+-.|++.+..
T Consensus 279 ~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~-----kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lkr~i 353 (476)
T KOG0646|consen 279 AITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS-----KGPVTNLQINPLERGIILFEHKQPSLPNPHLKRMI 353 (476)
T ss_pred ceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh-----ccccceeEeeccccceecccccCccCCchHhhccC
Confidence 8888875 9999999999999999999998887766532 6678888874 4445544455556666665433
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-22 Score=192.76 Aligned_cols=300 Identities=19% Similarity=0.246 Sum_probs=219.0
Q ss_pred eeeecCcceEEEeeCCCeEEEEEe------------ecCccceEEEEEc-------------CCEEEEEeCCCcEEEEeC
Q 008820 225 ARAAGGVKDLVNGLSKGNVKFKDL------------QGHRDCVTGLAVG-------------GGFLFSSSFDKSIHVWSL 279 (552)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~l------------~~H~~~V~~l~~s-------------~~~l~s~s~dg~I~iwd~ 279 (552)
..|.+....+..-..+..+.+|++ --|...|+.+..- ...++|++.|++||+||+
T Consensus 330 ~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l 409 (1080)
T KOG1408|consen 330 CQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDL 409 (1080)
T ss_pred EEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeec
Confidence 344445555555666777777774 3588888887542 456999999999999998
Q ss_pred CCCeEEEEE-------------------------------------eCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q 008820 280 KDFSHVHTF-------------------------------------KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (552)
Q Consensus 280 ~~~~~~~~~-------------------------------------~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 322 (552)
+.+..-.++ -+....+.+++.+|+++ .|++|..-|++++|++
T Consensus 410 ~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq-hLAsGDr~GnlrVy~L 488 (1080)
T KOG1408|consen 410 AFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ-HLASGDRGGNLRVYDL 488 (1080)
T ss_pred ccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc-eecccCccCceEEEEe
Confidence 753111110 11234689999999776 6799999999999999
Q ss_pred CCCCCCccccccccCCCceeeeEEEEeeC-----CCEEEEeeCCCcEEEEECC-CCceeEEecCCCCCeEEEEEe-CC--
Q 008820 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTS-----GRYLYTGSGDRTIKAWSLL-DGTLSCTMSGHKSAVSTLAVC-NG-- 393 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~sgs~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~-~~-- 393 (552)
........+. . +...+.++... .++|++++.|..|++||+. +..+++++.+|...|+++.|. .+
T Consensus 489 q~l~~~~~~e---A----HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln 561 (1080)
T KOG1408|consen 489 QELEYTCFME---A----HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLN 561 (1080)
T ss_pred hhhhhhhhee---c----ccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCc
Confidence 8543322222 2 22234454433 3489999999999999986 456788999999999999998 22
Q ss_pred -EEEEEeCCCcEEEEECCCCceeEEEecCC----CCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeec---c
Q 008820 394 -VLYSGSRDGTIRLWSLSDHSLLTVLEEDS----SGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQT---H 463 (552)
Q Consensus 394 -~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~---h 463 (552)
.+++++.|..|.+--.+.......+..++ +..... +.+.|..+++++++.|..|+|||+. +..+.+++ |
T Consensus 562 ~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYD-m~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~ 640 (1080)
T KOG1408|consen 562 RKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYD-MAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH 640 (1080)
T ss_pred eEEEeccCchhhheehhccccCceeccccccccccceEEE-eeeCCCcceEEEEecccceEEEeccccceeeeecccccC
Confidence 88999999988654433221122222111 122333 6889999999999999999999964 56667765 6
Q ss_pred cceEEEEE--ecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCe--EEEEeCCCeEEEEEecC
Q 008820 464 KGSVFAVF--LEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK--LFVGCADRTVKIALCNR 538 (552)
Q Consensus 464 ~~~v~~v~--~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~s~s~Dg~v~iw~~~~ 538 (552)
.+....+. |.|.||++...|.++.++|+.++++......+ ...|+.+.|.++. |++.+.||.|.||.+..
T Consensus 641 eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH-----sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 641 EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH-----SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred CCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc-----chheeeeeecccchhheeecCCceEEEEECch
Confidence 56665554 68999999999999999999999988776654 6679999999864 99999999999999873
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-22 Score=185.96 Aligned_cols=231 Identities=23% Similarity=0.395 Sum_probs=180.1
Q ss_pred cCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCC
Q 008820 250 GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLG 327 (552)
Q Consensus 250 ~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 327 (552)
+|...|.+++.+ +++|++|+.|..|.||+.++.+.++.+++|.+.|.+++|-. +..-+++++.|++|++|+++...
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s- 277 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLS- 277 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhH-
Confidence 789999999999 99999999999999999999999999999999999999965 66678999999999999998543
Q ss_pred CccccccccCCCceeeeEEEEeeC--CCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CCEEEEEeCCCcE
Q 008820 328 HEPLKKWNEEKDWRYSGIHALTTS--GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NGVLYSGSRDGTI 404 (552)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i 404 (552)
.+.++.+|+. .+..++.- ++.+-+|+.|+++++|++ ..+....+.+|.+.+-|++|- +..+++|+.||.|
T Consensus 278 --~vetlyGHqd----~v~~IdaL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~I 350 (479)
T KOG0299|consen 278 --YVETLYGHQD----GVLGIDALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSI 350 (479)
T ss_pred --HHHHHhCCcc----ceeeechhcccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecccceeeccCCceE
Confidence 3344444433 34444432 345666779999999999 344455778899999999998 6699999999999
Q ss_pred EEEECCCCceeEEEecCCC---C-------ceEEEEEEcCCCCEEEEEECCCcEEEEeCCcc------eeeeecccceEE
Q 008820 405 RLWSLSDHSLLTVLEEDSS---G-------AVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF------MKSMQTHKGSVF 468 (552)
Q Consensus 405 ~iwd~~~~~~~~~~~~~~~---~-------~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~------~~~~~~h~~~v~ 468 (552)
.+|++.+.+++.+....|. . .....++..|..+++++|+.+|.|++|.+... +..+. -.+.|+
T Consensus 351 aLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVN 429 (479)
T KOG0299|consen 351 ALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVN 429 (479)
T ss_pred EEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEE
Confidence 9999999999888765442 1 02234678899999999999999999986543 22333 567888
Q ss_pred EEEe--cCCEEEEE-eCCCeEEEEe
Q 008820 469 AVFL--EGKWLFTG-GWDKTVSVQE 490 (552)
Q Consensus 469 ~v~~--~~~~l~sg-s~dg~i~iwd 490 (552)
++.| +|+.+++| +....+--|-
T Consensus 430 sl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 430 SLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred EEEEccCCCEEEEecccccccceee
Confidence 8887 88866655 4444444443
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=178.48 Aligned_cols=264 Identities=18% Similarity=0.279 Sum_probs=203.4
Q ss_pred ccceeeecCcceEEEeeCCCeEEEE---------EeecCccceEEEEEc--CCEEEEEeCCCcEEEEeC------CC---
Q 008820 222 IDQARAAGGVKDLVNGLSKGNVKFK---------DLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSL------KD--- 281 (552)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~------~~--- 281 (552)
+..++.......+-+.+.+.+.++| ++.||.+.|+++.|+ +.++++++.|++-.||.. ..
T Consensus 151 iW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a 230 (481)
T KOG0300|consen 151 IWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNA 230 (481)
T ss_pred eeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCC
Confidence 4444444444444455555555555 468999999999999 899999999999999962 10
Q ss_pred -------------------------------CeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcc
Q 008820 282 -------------------------------FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP 330 (552)
Q Consensus 282 -------------------------------~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 330 (552)
..++..+.+|.+.|.+..|...+ ..+++++.|.+..+||++++.....
T Consensus 231 ~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~Q~vTaSWDRTAnlwDVEtge~v~~ 309 (481)
T KOG0300|consen 231 PSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-QQMVTASWDRTANLWDVETGEVVNI 309 (481)
T ss_pred CCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-ceeeeeeccccceeeeeccCceecc
Confidence 02356678999999999998744 4679999999999999998876665
Q ss_pred ccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCC-ceeEEecCCCCCeEEEEEe-CCEEEEEeCCCcEEEEE
Q 008820 331 LKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDG-TLSCTMSGHKSAVSTLAVC-NGVLYSGSRDGTIRLWS 408 (552)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd 408 (552)
+......- .-++-+|..+++++.+.|.+.++||++.. ..+..|.+|...|+++.|. +..+++|+.|.+|++||
T Consensus 310 LtGHd~EL-----tHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWd 384 (481)
T KOG0300|consen 310 LTGHDSEL-----THCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWD 384 (481)
T ss_pred ccCcchhc-----cccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEee
Confidence 55433221 12345667779999999999999999843 4577899999999999999 88999999999999999
Q ss_pred CCCCc-eeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc------ceeeeecccceEEEEEecC----CEE
Q 008820 409 LSDHS-LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK------FMKSMQTHKGSVFAVFLEG----KWL 477 (552)
Q Consensus 409 ~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~------~~~~~~~h~~~v~~v~~~~----~~l 477 (552)
+++.+ ++.++.... .+.. ++++..+..|+.-..+..|++||+.. +...-++|..-|.|++|.. .-|
T Consensus 385 LrNMRsplATIRtdS--~~NR-vavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnL 461 (481)
T KOG0300|consen 385 LRNMRSPLATIRTDS--PANR-VAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNL 461 (481)
T ss_pred eccccCcceeeecCC--ccce-eEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCccccc
Confidence 99865 567776543 2333 57788788999999999999999642 3335578999999999822 357
Q ss_pred EEEeCCCeEEEEecCCC
Q 008820 478 FTGGWDKTVSVQELAGD 494 (552)
Q Consensus 478 ~sgs~dg~i~iwd~~~~ 494 (552)
++++.|..+.=|++...
T Consensus 462 ftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 462 FTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccccccceeeeeEeccc
Confidence 89999999999998754
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-22 Score=193.64 Aligned_cols=265 Identities=18% Similarity=0.223 Sum_probs=206.7
Q ss_pred EEEc-CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcccccccc
Q 008820 258 LAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNE 336 (552)
Q Consensus 258 l~~s-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 336 (552)
+.|+ .+.|+.|.. ..|++|+..+++.......+...|+++.|++++. +|++|..+|.|.|||....+....+...
T Consensus 183 ldWss~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~~~~~-- 258 (484)
T KOG0305|consen 183 LDWSSANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRTLRGS-- 258 (484)
T ss_pred hhcccCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCC-EEEEeecCCeEEEEehhhccccccccCC--
Confidence 4566 667777764 4799999999987776666689999999999766 7799999999999999866544444331
Q ss_pred CCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEE-ecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCc
Q 008820 337 EKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT-MSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHS 413 (552)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~ 413 (552)
+...+.++++++..+.+|+.|+.|..+|++..+.... +.+|...|..++|+ +.++++|+.|+.+.|||.....
T Consensus 259 ----h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 259 ----HASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE 334 (484)
T ss_pred ----cCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence 2334667888899999999999999999998876555 88999999999999 4499999999999999998888
Q ss_pred eeEEEecCCCCceEEEEEEcCC-CCEEEEEE--CCCcEEEEeCCc--ceeeeecccceEEEEEe--cCCEEEE--EeCCC
Q 008820 414 LLTVLEEDSSGAVSSVLSLTAV-QHTLVVSH--ESGSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKWLFT--GGWDK 484 (552)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~--~dg~i~iwd~~~--~~~~~~~h~~~v~~v~~--~~~~l~s--gs~dg 484 (552)
++..+..|. ..+.. ++|+|- ..+||+|+ .|+.|++||... .+..+. -.+.|.++.| ..+-|++ |..++
T Consensus 335 p~~~~~~H~-aAVKA-~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 335 PKFTFTEHT-AAVKA-LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred ccEEEeccc-eeeeE-eeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCC
Confidence 888888773 45554 677774 56788764 599999999653 333332 3567888988 3433444 34577
Q ss_pred eEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEEeCCCeEEEEEecC
Q 008820 485 TVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCADRTVKIALCNR 538 (552)
Q Consensus 485 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~Dg~v~iw~~~~ 538 (552)
.|.||+..+.+....+..+ ...|..++++|+ .+++|+.|.++++|++-.
T Consensus 412 ~i~lw~~ps~~~~~~l~gH-----~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 412 QITLWKYPSMKLVAELLGH-----TSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred cEEEEeccccceeeeecCC-----cceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 8999999886555554443 777999999975 499999999999999864
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-21 Score=160.58 Aligned_cols=264 Identities=19% Similarity=0.240 Sum_probs=203.4
Q ss_pred cccceeeecCcceEEEeeCCCeEEEEE------------------------eecCccceEEEEEc--CCEEEEEeCCCcE
Q 008820 221 DIDQARAAGGVKDLVNGLSKGNVKFKD------------------------LQGHRDCVTGLAVG--GGFLFSSSFDKSI 274 (552)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------l~~H~~~V~~l~~s--~~~l~s~s~dg~I 274 (552)
.+.++.|.+.+..++.++...+.++-. -+.|.+.|.|.+|+ |+++++|+.|.+|
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~i 113 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTI 113 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceE
Confidence 466777888887777777666555432 34689999999999 9999999999999
Q ss_pred EEEeCCCCeE-----EEEEeCCCCCeEEEEEecC---CCCEEEEEc-CCCcEEEEeCCCCCCCccccccccCCCceeeeE
Q 008820 275 HVWSLKDFSH-----VHTFKGHDHKVMAVVYVDE---DQPLCISGD-SGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGI 345 (552)
Q Consensus 275 ~iwd~~~~~~-----~~~~~~h~~~v~~v~~~~~---~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 345 (552)
++.-.+...+ -..+.-|.+.|..++|..+ +..+|++++ .|..|++-|...++....+ .++.. +. +
T Consensus 114 k~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~---sghtg-hi--l 187 (350)
T KOG0641|consen 114 KVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL---SGHTG-HI--L 187 (350)
T ss_pred EEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee---cCCcc-cE--E
Confidence 9987654332 2346679999999999753 445666655 4677777787766544333 33333 22 2
Q ss_pred EEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecC--C-----CCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeE
Q 008820 346 HALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSG--H-----KSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLT 416 (552)
Q Consensus 346 ~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~--h-----~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~ 416 (552)
.-.++++-.+++|+.|.+|++||++-..++.++.. | .+.|.++++. +.+|++|-.|....+||++.++.++
T Consensus 188 alyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq 267 (350)
T KOG0641|consen 188 ALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ 267 (350)
T ss_pred EEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceee
Confidence 34678899999999999999999998888887632 2 3568888887 4499999999999999999999999
Q ss_pred EEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc------ceeeeecccceEEEEEe--cCCEEEEEeCCCeEEE
Q 008820 417 VLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK------FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSV 488 (552)
Q Consensus 417 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~------~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~i 488 (552)
.+..|. ..+.+ +.|+|...++++|+.|..|++-|+.. ++.....|...+..+.| ..--+++.+.|.++.+
T Consensus 268 ~f~phs-adir~-vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tl 345 (350)
T KOG0641|consen 268 RFHPHS-ADIRC-VRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATL 345 (350)
T ss_pred eeCCCc-cceeE-EEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEE
Confidence 997763 44555 69999999999999999999999652 34456679888888887 5567888999999999
Q ss_pred EecC
Q 008820 489 QELA 492 (552)
Q Consensus 489 wd~~ 492 (552)
|-+.
T Consensus 346 wa~~ 349 (350)
T KOG0641|consen 346 WALN 349 (350)
T ss_pred eccC
Confidence 9764
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-22 Score=192.40 Aligned_cols=249 Identities=18% Similarity=0.263 Sum_probs=184.6
Q ss_pred EEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEE--EeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEe
Q 008820 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHT--FKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (552)
Q Consensus 246 ~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~--~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 321 (552)
.....|.++|..+.|. ...|++++.|.++++||+++.++... +.+|...|.+++|.|.+..+|++|+.||.|.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 3456899999999999 67899999999999999999998876 8999999999999999999999999999999999
Q ss_pred CCCCCCC--------------------c----cccccccCCCceeeeEE-EEeeCCCEEEEeeC-CCcEEEEECCCCcee
Q 008820 322 FSFPLGH--------------------E----PLKKWNEEKDWRYSGIH-ALTTSGRYLYTGSG-DRTIKAWSLLDGTLS 375 (552)
Q Consensus 322 ~~~~~~~--------------------~----~~~~~~~~~~~~~~~~~-~~~~~~~~l~sgs~-dg~i~iwd~~~~~~~ 375 (552)
++-.... + .+..+..+.......+. -+..|...|++++. |+.|++||++.....
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 8743200 0 01111111111111122 23446778999887 999999999865433
Q ss_pred EE--------ecCC---CCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCc--eeEEEecCCCCceEEEEEEcCCCCEEE
Q 008820 376 CT--------MSGH---KSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHS--LLTVLEEDSSGAVSSVLSLTAVQHTLV 440 (552)
Q Consensus 376 ~~--------~~~h---~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~ 440 (552)
.. +..| .-.+.++..+ +.+|++.+.|++|++||+.+.. ++..+.++........-..+|++.+++
T Consensus 254 ~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~ 333 (720)
T KOG0321|consen 254 YRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL 333 (720)
T ss_pred cccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe
Confidence 22 2223 2245666665 5688877889999999998644 344444443333333346799999999
Q ss_pred EEECCCcEEEEeCCc---ceeeeecccceEEEEEe---cCCEEEEEeCCCeEEEEecCCC
Q 008820 441 VSHESGSIKVWRNDK---FMKSMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQELAGD 494 (552)
Q Consensus 441 ~g~~dg~i~iwd~~~---~~~~~~~h~~~v~~v~~---~~~~l~sgs~dg~i~iwd~~~~ 494 (552)
+|+.|...++|.+.. ....+.+|...|+++.| .-.-+++++.|.++++|++..+
T Consensus 334 SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 334 SGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 999999999998664 45678899999999998 4445677799999999999644
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=205.89 Aligned_cols=233 Identities=16% Similarity=0.292 Sum_probs=183.4
Q ss_pred eEEEEEc---CCEEEEEeCCCcEEEEeCCC---CeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCC
Q 008820 255 VTGLAVG---GGFLFSSSFDKSIHVWSLKD---FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328 (552)
Q Consensus 255 V~~l~~s---~~~l~s~s~dg~I~iwd~~~---~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 328 (552)
+..+.|+ .++|||++..|.|.+||+.. .+.+..|..|...++++.|++...++|++|+.||+|++||++..+..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 3456666 89999999999999999986 55667888999999999999999999999999999999999976655
Q ss_pred ccccccccCCCceeeeEEEEeeC-CCEEEEeeCCCcEEEEECCCC-ceeEEecCCCCCeEEEEEeCC--EEEEEeCCCcE
Q 008820 329 EPLKKWNEEKDWRYSGIHALTTS-GRYLYTGSGDRTIKAWSLLDG-TLSCTMSGHKSAVSTLAVCNG--VLYSGSRDGTI 404 (552)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~-~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~--~l~s~~~dg~i 404 (552)
.....-.. .... ..|+|. ++.|+++.+.|.+.+||++.. ++...+.+|.++|.|+.|+++ +|||||.|+.|
T Consensus 170 ~t~~~nSE----SiRD-V~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~v 244 (839)
T KOG0269|consen 170 STFRSNSE----SIRD-VKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMV 244 (839)
T ss_pred ccccccch----hhhc-eeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccE
Confidence 44443111 1112 245553 669999999999999999854 567788999999999999944 99999999999
Q ss_pred EEEECCCCceeEEEecCCCCceEEEEEEcCCCC-EEEEEE--CCCcEEEEeCCc---ceeeeecccceEEEEEe---cCC
Q 008820 405 RLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQH-TLVVSH--ESGSIKVWRNDK---FMKSMQTHKGSVFAVFL---EGK 475 (552)
Q Consensus 405 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~--~dg~i~iwd~~~---~~~~~~~h~~~v~~v~~---~~~ 475 (552)
+|||+.+++.......+...++.. +.|-|... .|++++ .|-.|+|||++. +..++..|+..++.+.| |..
T Consensus 245 kiWd~t~~~~~~~~tInTiapv~r-VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~ 323 (839)
T KOG0269|consen 245 KIWDMTDSRAKPKHTINTIAPVGR-VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRI 323 (839)
T ss_pred EEEeccCCCccceeEEeecceeee-eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCce
Confidence 999998766544444343344444 68887764 556554 478899999886 56788899999999999 456
Q ss_pred EEEEEeCCCeEEEEecCC
Q 008820 476 WLFTGGWDKTVSVQELAG 493 (552)
Q Consensus 476 ~l~sgs~dg~i~iwd~~~ 493 (552)
.+.+++.||+|..-.+++
T Consensus 324 ~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 324 NLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred eeEeecCccHHHHhhhhc
Confidence 889999999887655543
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.7e-22 Score=174.47 Aligned_cols=282 Identities=20% Similarity=0.326 Sum_probs=200.1
Q ss_pred EEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeE-----EEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcE
Q 008820 245 FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSH-----VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGI 317 (552)
Q Consensus 245 ~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~-----~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i 317 (552)
+..|+||.+.|++++|+ |++|+|++.|++|++|+++.... ++. .-.-+..+.++|.|+-..+++++-...++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEE
Confidence 34589999999999999 99999999999999999976432 111 11123568899999999999999999999
Q ss_pred EEEeCCCCCCCc---cccccccCC--CceeeeEE--EEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEE
Q 008820 318 FVWSFSFPLGHE---PLKKWNEEK--DWRYSGIH--ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAV 390 (552)
Q Consensus 318 ~vwd~~~~~~~~---~~~~~~~~~--~~~~~~~~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 390 (552)
++|.+....... ....+..++ ..+...+. .+.-.+.+|++++.|..|.+|+++ |+.+..+......-+..+.
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 999876433211 111111110 01112222 334456699999999999999998 9999988877777777778
Q ss_pred e-CC-EEEEEeCCCcEEEEECC---CCc-----eeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC------
Q 008820 391 C-NG-VLYSGSRDGTIRLWSLS---DHS-----LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND------ 454 (552)
Q Consensus 391 ~-~~-~l~s~~~dg~i~iwd~~---~~~-----~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~------ 454 (552)
+ ++ ++++++----|++|.+- .|. .+..+++|.. .+.. ++|+++...+++.+.||++++||+.
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~s-aV~~-~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~ 314 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS-AVLA-AAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG 314 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchh-heee-eeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence 8 33 88888888899999873 222 3445666643 3333 7999999999999999999999854
Q ss_pred c---ceeee--ecc---cceE-EEEEecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-CeEEE
Q 008820 455 K---FMKSM--QTH---KGSV-FAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-GKLFV 524 (552)
Q Consensus 455 ~---~~~~~--~~h---~~~v-~~v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~s 524 (552)
+ .++.. ..| ..++ .+++|+|+.|+.+. ...++++..++++....+... |...|++++|++ ++.+.
T Consensus 315 qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~----h~~~Is~is~~~~g~~~a 389 (420)
T KOG2096|consen 315 QDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDI----HSTTISSISYSSDGKYIA 389 (420)
T ss_pred CCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHh----hcCceeeEEecCCCcEEe
Confidence 1 11111 011 1233 46678999888765 468999999887655544432 367799999994 66777
Q ss_pred EeCCCeEEEEE
Q 008820 525 GCADRTVKIAL 535 (552)
Q Consensus 525 ~s~Dg~v~iw~ 535 (552)
.+.|..+++..
T Consensus 390 tcGdr~vrv~~ 400 (420)
T KOG2096|consen 390 TCGDRYVRVIR 400 (420)
T ss_pred eecceeeeeec
Confidence 77788999886
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=172.93 Aligned_cols=228 Identities=24% Similarity=0.328 Sum_probs=168.0
Q ss_pred ccceeeecCcceEEEeeCCCeEEEE------------EeecCccceEEEEEc----CCEEEEEeCCCcEEEEeCCCCeE-
Q 008820 222 IDQARAAGGVKDLVNGLSKGNVKFK------------DLQGHRDCVTGLAVG----GGFLFSSSFDKSIHVWSLKDFSH- 284 (552)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~l~~H~~~V~~l~~s----~~~l~s~s~dg~I~iwd~~~~~~- 284 (552)
+..+...-.++++++..+|+.+++. +|.||+++|+.++|. |.+||++++||.|.||.-++++-
T Consensus 14 IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~ 93 (299)
T KOG1332|consen 14 IHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWT 93 (299)
T ss_pred hhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchh
Confidence 4444444556677777776666654 588999999999997 99999999999999999887743
Q ss_pred -EEEEeCCCCCeEEEEEecCC-CCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeC---C-------
Q 008820 285 -VHTFKGHDHKVMAVVYVDED-QPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTS---G------- 352 (552)
Q Consensus 285 -~~~~~~h~~~v~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------- 352 (552)
......|...|++++|.|.+ +.+|++++.||.|.+.+.+....-...+....|.. -.. ..++.|. |
T Consensus 94 k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-Gvn-sVswapa~~~g~~~~~~~ 171 (299)
T KOG1332|consen 94 KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-GVN-SVSWAPASAPGSLVDQGP 171 (299)
T ss_pred hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc-ccc-eeeecCcCCCccccccCc
Confidence 34556899999999999864 45788999999999999986522222222222211 111 1233332 2
Q ss_pred ----CEEEEeeCCCcEEEEECCCCc--eeEEecCCCCCeEEEEEeC------CEEEEEeCCCcEEEEECCCCc--eeEEE
Q 008820 353 ----RYLYTGSGDRTIKAWSLLDGT--LSCTMSGHKSAVSTLAVCN------GVLYSGSRDGTIRLWSLSDHS--LLTVL 418 (552)
Q Consensus 353 ----~~l~sgs~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~------~~l~s~~~dg~i~iwd~~~~~--~~~~~ 418 (552)
+.|++|+.|..|+||+..+++ .-+++.+|.+.|..++|.+ ..+++++.||++.||-.+... -..++
T Consensus 172 ~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tl 251 (299)
T KOG1332|consen 172 AAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTL 251 (299)
T ss_pred ccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccc
Confidence 479999999999999998763 3446899999999999983 289999999999999876321 12222
Q ss_pred ecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEe
Q 008820 419 EEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR 452 (552)
Q Consensus 419 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 452 (552)
....+..+.. ++||..|+.|++++.|+.|.+|.
T Consensus 252 l~~f~~~~w~-vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 252 LEEFPDVVWR-VSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred cccCCcceEE-EEEeccccEEEEecCCcEEEEEE
Confidence 2222445555 69999999999999999999996
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-20 Score=176.24 Aligned_cols=322 Identities=17% Similarity=0.230 Sum_probs=232.7
Q ss_pred CCCCCccccceeeecCcceEEEeeCCC--------eEEEEE---------eecCccceEEEEEc----CCEEEEE--eCC
Q 008820 215 ENSDGADIDQARAAGGVKDLVNGLSKG--------NVKFKD---------LQGHRDCVTGLAVG----GGFLFSS--SFD 271 (552)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~---------l~~H~~~V~~l~~s----~~~l~s~--s~d 271 (552)
...++..+.+....++-..++++-..+ .+++|+ +..-...|.|++|+ |.+++.- +.+
T Consensus 100 y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~ 179 (626)
T KOG2106|consen 100 YLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNP 179 (626)
T ss_pred ccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCc
Confidence 334444555666665555555443333 345555 34566789999998 6666554 456
Q ss_pred CcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeC
Q 008820 272 KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTS 351 (552)
Q Consensus 272 g~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (552)
..+.|||...+......+..++.|....|+|.+.+++++++. +.+.+|+.+.+...+....+..... ....+.+|.++
T Consensus 180 h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~en 257 (626)
T KOG2106|consen 180 HMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFLEN 257 (626)
T ss_pred cccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccc-eEEEEEEEcCC
Confidence 678999999888888888888999999999999999888875 8999999988766665555555544 33334455566
Q ss_pred CCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CCEEEEEeCCCcEEEEECCCCcee------------EEE
Q 008820 352 GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHSLL------------TVL 418 (552)
Q Consensus 352 ~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~------------~~~ 418 (552)
|+ +++|..+|.|.||+..+.+..+....|.+.|.+++.. ++.|++|+.|..|..||- .-+.+ +++
T Consensus 258 gd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~-~y~k~r~~elPe~~G~iRtv 335 (626)
T KOG2106|consen 258 GD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDD-NYRKLRETELPEQFGPIRTV 335 (626)
T ss_pred CC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccc-cccccccccCchhcCCeeEE
Confidence 54 8899999999999998888877777999999999998 789999999999999993 21111 111
Q ss_pred ecCC----------------------------CCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcceeeeecccceEEEE
Q 008820 419 EEDS----------------------------SGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAV 470 (552)
Q Consensus 419 ~~~~----------------------------~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~h~~~v~~v 470 (552)
.... ...... ++..|+.+.+++++.|+.+++|+-.+++.+.. -..++.|+
T Consensus 336 ~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwg-la~hps~~q~~T~gqdk~v~lW~~~k~~wt~~-~~d~~~~~ 413 (626)
T KOG2106|consen 336 AEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWG-LATHPSKNQLLTCGQDKHVRLWNDHKLEWTKI-IEDPAECA 413 (626)
T ss_pred ecCCCcEEEeeccceEEEeeecCCceEEEEecccceee-EEcCCChhheeeccCcceEEEccCCceeEEEE-ecCceeEe
Confidence 1110 111112 56678888999999999999999555544433 23445555
Q ss_pred Ee--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEEeCCCeEEEEEecCCcceeEEE
Q 008820 471 FL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGCADRTVKIALCNRQIPEIFSL 546 (552)
Q Consensus 471 ~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~Dg~v~iw~~~~~~~~~~~~ 546 (552)
.| .| .++.|+..|...+.|.++..+...-.. ..+++++.|+| ..|+.|+.|+.|+||.++.++.....+
T Consensus 414 ~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d------~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~ 486 (626)
T KOG2106|consen 414 DFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD------NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRV 486 (626)
T ss_pred eccCcc-eEEEeeccceEEEEecccceeEEEEec------CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEe
Confidence 54 67 999999999999999998655443222 66799999996 459999999999999999877765554
Q ss_pred ecc
Q 008820 547 LLH 549 (552)
Q Consensus 547 ~gh 549 (552)
.-|
T Consensus 487 ~k~ 489 (626)
T KOG2106|consen 487 GKC 489 (626)
T ss_pred eee
Confidence 433
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-21 Score=165.47 Aligned_cols=253 Identities=15% Similarity=0.157 Sum_probs=202.1
Q ss_pred cccceeeecCcceEEEeeCCCeEEEEEe-----------ecCccceEEEEEc---CCEEEEEeCCCcEEEEeCCCCeEEE
Q 008820 221 DIDQARAAGGVKDLVNGLSKGNVKFKDL-----------QGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFSHVH 286 (552)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~~~~~~ 286 (552)
.+..+.+...+..++++..++.+.+|.+ .||.+.|-.++|+ .+.+++++.|.+|++||...+++..
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~ 101 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTA 101 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEE
Confidence 4677888889999999999999999874 5899999999998 8999999999999999999999999
Q ss_pred EEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEE
Q 008820 287 TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKA 366 (552)
Q Consensus 287 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~i 366 (552)
......+.+ -+.|+|+++ +++.++.|..|.+.|.++.+.....+.... . .-.+++.+++.++.....|.|.|
T Consensus 102 ~i~~~~eni-~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~~~~~~~e-----~-ne~~w~~~nd~Fflt~GlG~v~I 173 (313)
T KOG1407|consen 102 RIETKGENI-NITWSPDGE-YIAVGNKDDRITFIDARTYKIVNEEQFKFE-----V-NEISWNNSNDLFFLTNGLGCVEI 173 (313)
T ss_pred EeeccCcce-EEEEcCCCC-EEEEecCcccEEEEEecccceeehhcccce-----e-eeeeecCCCCEEEEecCCceEEE
Confidence 887655554 567899777 668899999999999986544333222211 1 11245566677777677799999
Q ss_pred EECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEEC
Q 008820 367 WSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHE 444 (552)
Q Consensus 367 wd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 444 (552)
.....-+++..+++|.....|+.|+ +.++++|+.|..+.+||+...-+++.+.... -++.. ++|+.+|++|++|++
T Consensus 174 LsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRld-wpVRT-lSFS~dg~~lASaSE 251 (313)
T KOG1407|consen 174 LSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLD-WPVRT-LSFSHDGRMLASASE 251 (313)
T ss_pred EeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecccc-CceEE-EEeccCcceeeccCc
Confidence 9999999999999999999999999 4499999999999999999888888887653 33444 799999999999999
Q ss_pred CCcEEEEeCCcceeeee-cccceEEEEEe--cCCEEEEEeCC
Q 008820 445 SGSIKVWRNDKFMKSMQ-THKGSVFAVFL--EGKWLFTGGWD 483 (552)
Q Consensus 445 dg~i~iwd~~~~~~~~~-~h~~~v~~v~~--~~~~l~sgs~d 483 (552)
|-.|-|=+..+.-+..+ .+.++...++| ...+||-++.|
T Consensus 252 Dh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 252 DHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence 99999888665544443 35778888888 45566666544
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=173.87 Aligned_cols=218 Identities=18% Similarity=0.231 Sum_probs=179.0
Q ss_pred ecCcceEEEeeCCCeEEEEEe---------ecCccceEEEEEc----CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCC
Q 008820 228 AGGVKDLVNGLSKGNVKFKDL---------QGHRDCVTGLAVG----GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHK 294 (552)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~l---------~~H~~~V~~l~~s----~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~ 294 (552)
+..+..+++++.|..+.++++ ..|.+.|+++.|. ...|++|+.||.|.+|+.....++.++++|.+.
T Consensus 50 AVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~ 129 (362)
T KOG0294|consen 50 AVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ 129 (362)
T ss_pred EecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc
Confidence 345688899999999999885 4699999999998 348999999999999999999999999999999
Q ss_pred eEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCce
Q 008820 295 VMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTL 374 (552)
Q Consensus 295 v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~ 374 (552)
|+.++.+|.+. +.++.+.|+.++.||+-.++.......-. ......|++.|.+++.++.++ |-+|.+.+.+.
T Consensus 130 Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~------~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v 201 (362)
T KOG0294|consen 130 VTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKN------KATLVSWSPQGDHFVVSGRNK-IDIYQLDNASV 201 (362)
T ss_pred cceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCC------cceeeEEcCCCCEEEEEeccE-EEEEecccHhH
Confidence 99999999655 88899999999999998776544433221 223467889999888888754 89999988776
Q ss_pred eEEecCCCCCeEEEEEe-CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEE-EEcCCCCEEEEEECCCcEEEEe
Q 008820 375 SCTMSGHKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVL-SLTAVQHTLVVSHESGSIKVWR 452 (552)
Q Consensus 375 ~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~l~~g~~dg~i~iwd 452 (552)
...+.. ...+.|+.|. .+.+++|+.|+.|.+||..+..+...+..|. ..+-.+. .-.|++.+|++++.||.|++||
T Consensus 202 ~~~i~~-~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~-~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 202 FREIEN-PKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHE-NRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred hhhhhc-cccceeeeecCCceEEEecCCceEEEeccCCCccceeeecch-hheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 665543 3567888888 6699999999999999999988888888874 4444443 3367788999999999999999
Q ss_pred CCc
Q 008820 453 NDK 455 (552)
Q Consensus 453 ~~~ 455 (552)
...
T Consensus 280 ~~~ 282 (362)
T KOG0294|consen 280 IDM 282 (362)
T ss_pred ccc
Confidence 653
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-22 Score=184.79 Aligned_cols=222 Identities=21% Similarity=0.297 Sum_probs=171.8
Q ss_pred cCcceEEEeeCCCeEEEEEe------------------------------ecCccceEEEEEc---CCEEEEEeCCCcEE
Q 008820 229 GGVKDLVNGLSKGNVKFKDL------------------------------QGHRDCVTGLAVG---GGFLFSSSFDKSIH 275 (552)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~l------------------------------~~H~~~V~~l~~s---~~~l~s~s~dg~I~ 275 (552)
+.++.++.|.-+..+.+|+| .+|+++|.+++|+ .+.|||||.|.+|+
T Consensus 190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence 44667888888888888874 2699999999998 88999999999999
Q ss_pred EEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeC-CCE
Q 008820 276 VWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTS-GRY 354 (552)
Q Consensus 276 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 354 (552)
+||+.++++..++..|...|.++.|+|....+|++|+.|++|.+.|.+........-.+.+. . ....+.+. ...
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~----V-Ekv~w~~~se~~ 344 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGE----V-EKVAWDPHSENS 344 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccc----e-EEEEecCCCcee
Confidence 99999999999999999999999999999999999999999999999853322211111111 1 12244443 448
Q ss_pred EEEeeCCCcEEEEECCCC-ceeEEecCCCCCeEEEEEe---CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEE
Q 008820 355 LYTGSGDRTIKAWSLLDG-TLSCTMSGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVL 430 (552)
Q Consensus 355 l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 430 (552)
+++++.||+|+-+|+++. ++++++..|.++|++++++ ++++++++.|+.+++|++..............-....+.
T Consensus 345 f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~ 424 (463)
T KOG0270|consen 345 FFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCF 424 (463)
T ss_pred EEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeec
Confidence 889999999999999865 9999999999999999998 679999999999999999755442222211111123334
Q ss_pred EEcCCC-CEEEEEECCCcEEEEeCCc
Q 008820 431 SLTAVQ-HTLVVSHESGSIKVWRNDK 455 (552)
Q Consensus 431 ~~s~~~-~~l~~g~~dg~i~iwd~~~ 455 (552)
++.|+- .+++.|+..+.+++||+-+
T Consensus 425 ~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred ccCCCcceEEEecCccceEEEeeccc
Confidence 555553 4677788888899999643
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=188.73 Aligned_cols=273 Identities=15% Similarity=0.132 Sum_probs=190.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeE------EEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccc
Q 008820 262 GGFLFSSSFDKSIHVWSLKDFSH------VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWN 335 (552)
Q Consensus 262 ~~~l~s~s~dg~I~iwd~~~~~~------~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 335 (552)
...|+.+..||.|.++|...... +.....|...|.++.|.| ++..|++++.|.++++||+........- ...
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~-~~~ 141 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGR-LNL 141 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecce-eec
Confidence 56899999999999999865432 245567999999999999 8889999999999999999876543321 122
Q ss_pred cCCCceeeeEEEEeeC-CCEEEEeeCCCcEEEEECCCCc--------------------e-------eEEecCCCCC---
Q 008820 336 EEKDWRYSGIHALTTS-GRYLYTGSGDRTIKAWSLLDGT--------------------L-------SCTMSGHKSA--- 384 (552)
Q Consensus 336 ~~~~~~~~~~~~~~~~-~~~l~sgs~dg~i~iwd~~~~~--------------------~-------~~~~~~h~~~--- 384 (552)
+|.. ... ..||.+. ...|++|+.||.|.|||++-.. + +..-..+...
T Consensus 142 GH~~-Svk-S~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~s 219 (720)
T KOG0321|consen 142 GHTG-SVK-SECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFS 219 (720)
T ss_pred cccc-ccc-hhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceee
Confidence 2222 222 2356654 5599999999999999986321 0 0111223333
Q ss_pred -eEEEEEe-CCEEEEEeC-CCcEEEEECCCCceeEEEe------cCCC---CceEEEEEEcCCCCEEEEEECCCcEEEEe
Q 008820 385 -VSTLAVC-NGVLYSGSR-DGTIRLWSLSDHSLLTVLE------EDSS---GAVSSVLSLTAVQHTLVVSHESGSIKVWR 452 (552)
Q Consensus 385 -v~~l~~~-~~~l~s~~~-dg~i~iwd~~~~~~~~~~~------~~~~---~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 452 (552)
|+.+.|- +..|++++. |+.|++||++......... .+.. ..-...+.....|.+|++.+.|+.|++|+
T Consensus 220 svTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~yn 299 (720)
T KOG0321|consen 220 SVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYN 299 (720)
T ss_pred eeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEe
Confidence 4556666 458998887 9999999998765432221 1111 11122255666788998888999999999
Q ss_pred CCc----ceeeeecccce---E-EEEEecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC---e
Q 008820 453 NDK----FMKSMQTHKGS---V-FAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG---K 521 (552)
Q Consensus 453 ~~~----~~~~~~~h~~~---v-~~v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~ 521 (552)
+.. ++..+.++... + .+++|++.++++|+.|...++|.+.+.+........ +...|++++|.+. .
T Consensus 300 m~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~G----ht~eVt~V~w~pS~~t~ 375 (720)
T KOG0321|consen 300 MRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLG----HTREVTTVRWLPSATTP 375 (720)
T ss_pred ccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhC----cceEEEEEeeccccCCC
Confidence 764 44445554332 2 245679999999999999999999876554433322 2566999999863 4
Q ss_pred EEEEeCCCeEEEEEecCCcce
Q 008820 522 LFVGCADRTVKIALCNRQIPE 542 (552)
Q Consensus 522 l~s~s~Dg~v~iw~~~~~~~~ 542 (552)
+++++.|..++||++.+...+
T Consensus 376 v~TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 376 VATCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred ceeeccCcceEEEeccCchhh
Confidence 999999999999999755543
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=167.12 Aligned_cols=257 Identities=16% Similarity=0.211 Sum_probs=198.6
Q ss_pred CCCCccccceeeecCcceEEEeeCCCeEEEEEee--------cCccceEEEEEc-CCEEEEEeCCCcEEEEeCCCCeEEE
Q 008820 216 NSDGADIDQARAAGGVKDLVNGLSKGNVKFKDLQ--------GHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVH 286 (552)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------~H~~~V~~l~~s-~~~l~s~s~dg~I~iwd~~~~~~~~ 286 (552)
+++...|..+.+++..+.++.+++++..++++.. .|..++.+++|. ...+++|+.||.|+.+|+.++....
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCccee
Confidence 3445568889999999999999999999999854 489999999999 8999999999999999999877654
Q ss_pred EEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEE
Q 008820 287 TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKA 366 (552)
Q Consensus 287 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~i 366 (552)
+..|..+|.++.+++. ...+++|+.|++|++||.+...... .... ...+.+++..++.|++|+.|..+.+
T Consensus 90 -igth~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~R~~~~~~---~~d~-----~kkVy~~~v~g~~LvVg~~~r~v~i 159 (323)
T KOG1036|consen 90 -IGTHDEGIRCIEYSYE-VGCVISGSWDKTIKFWDPRNKVVVG---TFDQ-----GKKVYCMDVSGNRLVVGTSDRKVLI 159 (323)
T ss_pred -eccCCCceEEEEeecc-CCeEEEcccCccEEEEecccccccc---cccc-----CceEEEEeccCCEEEEeecCceEEE
Confidence 4569999999999974 4477999999999999998522211 1111 1257788999999999999999999
Q ss_pred EECCCCceeEEe--cCCCCCeEEEEEeC--CEEEEEeCCCcEEEEECCCC----ceeEEEecCCCC-------ceEEEEE
Q 008820 367 WSLLDGTLSCTM--SGHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDH----SLLTVLEEDSSG-------AVSSVLS 431 (552)
Q Consensus 367 wd~~~~~~~~~~--~~h~~~v~~l~~~~--~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~-------~~~~~~~ 431 (552)
||+++.....+. ..-+-.+.|+++.+ .-.++++-||.|.+=.+... +....|+.|... .....++
T Consensus 160 yDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~ 239 (323)
T KOG1036|consen 160 YDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA 239 (323)
T ss_pred EEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE
Confidence 999976554322 22345678888874 46788899999988666654 334444443211 1122368
Q ss_pred EcCCCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEe--cCCEEEEEeC
Q 008820 432 LTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGW 482 (552)
Q Consensus 432 ~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~sgs~ 482 (552)
|+|-...+++|+.||.|.+||.. +.+..+......|.+++| +|..||.++.
T Consensus 240 Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 240 FHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999999999999999999954 556666666778888888 8999999874
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-22 Score=196.55 Aligned_cols=196 Identities=21% Similarity=0.385 Sum_probs=163.8
Q ss_pred eCCCEEEEeeCCCcEEEEECCC---CceeEEecCCCCCeEEEEEe---CCEEEEEeCCCcEEEEECCCCceeEEEecCCC
Q 008820 350 TSGRYLYTGSGDRTIKAWSLLD---GTLSCTMSGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423 (552)
Q Consensus 350 ~~~~~l~sgs~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 423 (552)
.+.++|++++..|.|.+||+.. .+.+..|..|+..++++.|+ +++|++||.||+|++||++..+...++... .
T Consensus 98 ~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~n-S 176 (839)
T KOG0269|consen 98 LYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSN-S 176 (839)
T ss_pred chhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccccc-c
Confidence 3567999999999999999986 55666888999999999999 679999999999999999999888888764 3
Q ss_pred CceEEEEEEcC-CCCEEEEEECCCcEEEEeCCc---ceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeee
Q 008820 424 GAVSSVLSLTA-VQHTLVVSHESGSIKVWRNDK---FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFE 497 (552)
Q Consensus 424 ~~~~~~~~~s~-~~~~l~~g~~dg~i~iwd~~~---~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~ 497 (552)
..+.. +.|+| .+..++++.+.|.+++||+++ +...+..|.++|.++.| ++.+|||||.|+.|+|||+.+.+..
T Consensus 177 ESiRD-V~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~ 255 (839)
T KOG0269|consen 177 ESIRD-VKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK 255 (839)
T ss_pred hhhhc-eeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc
Confidence 44455 46655 478899999999999999886 56678899999999987 8999999999999999999876443
Q ss_pred eeeccCCCcccCcceEEEEEeCCe---EEEEe--CCCeEEEEEecCCcceeEEEecccc
Q 008820 498 EDVIPTGAIPCGSVITALLYWQGK---LFVGC--ADRTVKIALCNRQIPEIFSLLLHIN 551 (552)
Q Consensus 498 ~~~~~~~~~~~~~~v~~l~~~~~~---l~s~s--~Dg~v~iw~~~~~~~~~~~~~gh~~ 551 (552)
.... +....+|..+.|-|.+ |++++ .|-.|+|||+.++..+...|..|++
T Consensus 256 ~~~t----InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~ 310 (839)
T KOG0269|consen 256 PKHT----INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD 310 (839)
T ss_pred ceeE----EeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc
Confidence 3222 2226779999999754 88766 5889999999999999999999875
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.1e-21 Score=189.98 Aligned_cols=255 Identities=18% Similarity=0.248 Sum_probs=202.4
Q ss_pred ecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCC-eEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCC
Q 008820 249 QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF-SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFP 325 (552)
Q Consensus 249 ~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~ 325 (552)
.+|...-+.++|. |.+|++++.||.|++|+..+. ....++..+...|.+++.. ...|++|+.+++|.+|.+..+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY---SNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec---ccceEEeeccceEEEeeCCCC
Confidence 4788889999998 999999999999999997665 4445555577888888763 347899999999999999987
Q ss_pred CCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCc
Q 008820 326 LGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGT 403 (552)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~ 403 (552)
.....+..+... ..+.+++.+|++++.||.|-.|++.++.+......+++|..+|.++.|+ +++|++.+.||.
T Consensus 87 ~~~~iL~Rftlp-----~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~ 161 (933)
T KOG1274|consen 87 EEDTILARFTLP-----IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK 161 (933)
T ss_pred Cccceeeeeecc-----ceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCce
Confidence 766555554432 2356888899999999999999999999999999999999999999999 459999999999
Q ss_pred EEEEECCCCceeEEEecCC------CCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcc--eeeee--cccceEEEEE--
Q 008820 404 IRLWSLSDHSLLTVLEEDS------SGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF--MKSMQ--THKGSVFAVF-- 471 (552)
Q Consensus 404 i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~--~~~~~--~h~~~v~~v~-- 471 (552)
|++||+.++.+..++..-. ...+.+..+|+|++..+++.+.|+.|++|+...- ...+. .+...+..+.
T Consensus 162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ws 241 (933)
T KOG1274|consen 162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWS 241 (933)
T ss_pred EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEc
Confidence 9999999988776665321 1334556899999999999999999999986542 22222 2333355555
Q ss_pred ecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC
Q 008820 472 LEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG 520 (552)
Q Consensus 472 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 520 (552)
|+|+|||+++.||.|.|||+++... +. ....|++++|.++
T Consensus 242 PnG~YiAAs~~~g~I~vWnv~t~~~------~~---~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 242 PNGKYIAASTLDGQILVWNVDTHER------HE---FKRAVCCEAWKPN 281 (933)
T ss_pred CCCcEEeeeccCCcEEEEecccchh------cc---ccceeEEEecCCC
Confidence 4999999999999999999987221 11 1556889999863
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-22 Score=178.88 Aligned_cols=249 Identities=16% Similarity=0.236 Sum_probs=184.1
Q ss_pred ceEEEeeCCCeEEEEE---------eecCccceEEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEec
Q 008820 232 KDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVD 302 (552)
Q Consensus 232 ~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~ 302 (552)
..++++..||.+.+|+ |+.|.+.|..|++....+++++.|.+|+.|.++- .+++++.+ .+.+..+.-+.
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~ 157 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHR 157 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC-Ccceeeec-ccccccccccc
Confidence 4566777888888887 5789999999999989999999999999999765 46777654 34566665444
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCC-EEEEeeCCCcEEEEECCCCceeEEecCC
Q 008820 303 EDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTMSGH 381 (552)
Q Consensus 303 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~h 381 (552)
....++||+ -.|.|||.........+.. ..+ ......++|... .|++|+.|+.|.+||++++++++.+. -
T Consensus 158 -~~~~FaTcG--e~i~IWD~~R~~Pv~smsw---G~D--ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~ 228 (433)
T KOG0268|consen 158 -KNSVFATCG--EQIDIWDEQRDNPVSSMSW---GAD--SISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-L 228 (433)
T ss_pred -ccccccccC--ceeeecccccCCccceeec---CCC--ceeEEecCCCcchheeeeccCCceEEEecccCCccceee-e
Confidence 344667776 4689999875443332221 111 112234455433 88888899999999999999988765 2
Q ss_pred CCCeEEEEEeCC--EEEEEeCCCcEEEEECCCCc-eeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCccee
Q 008820 382 KSAVSTLAVCNG--VLYSGSRDGTIRLWSLSDHS-LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMK 458 (552)
Q Consensus 382 ~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~ 458 (552)
...-+.++|+++ .+++|++|..++.||++... ++.....| ...+.. +.|+|.|.-+++|+.|.+|+||..+..-.
T Consensus 229 ~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh-vsAV~d-VdfsptG~EfvsgsyDksIRIf~~~~~~S 306 (433)
T KOG0268|consen 229 TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH-VSAVMD-VDFSPTGQEFVSGSYDKSIRIFPVNHGHS 306 (433)
T ss_pred eccccceecCccccceeeccccccceehhhhhhcccchhhccc-ceeEEE-eccCCCcchhccccccceEEEeecCCCcc
Confidence 344578999954 78899999999999998765 45555544 444555 58999999999999999999998664332
Q ss_pred eeecc---cceEEEEEe--cCCEEEEEeCCCeEEEEecCC
Q 008820 459 SMQTH---KGSVFAVFL--EGKWLFTGGWDKTVSVQELAG 493 (552)
Q Consensus 459 ~~~~h---~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~ 493 (552)
.-..| ...|.++.| |.+++++||.|+.|++|....
T Consensus 307 RdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 307 RDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred hhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 22223 356888887 999999999999999998754
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=180.56 Aligned_cols=286 Identities=19% Similarity=0.240 Sum_probs=207.6
Q ss_pred EEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q 008820 245 FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (552)
Q Consensus 245 ~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 322 (552)
-..+.||++.|.+|... |.+|++|+.||+||||.+.+|++++++. ..+.|.+|+|+|....-+++...+..+.+-+-
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 34578999999999998 9999999999999999999999999987 55789999999987766666666666666654
Q ss_pred CCCCCC------cc-------------ccccccC----CC-c------eeeeEE--EEeeCCCEEEEeeCC---CcEEEE
Q 008820 323 SFPLGH------EP-------------LKKWNEE----KD-W------RYSGIH--ALTTSGRYLYTGSGD---RTIKAW 367 (552)
Q Consensus 323 ~~~~~~------~~-------------~~~~~~~----~~-~------~~~~~~--~~~~~~~~l~sgs~d---g~i~iw 367 (552)
.-+... .. +..|... .. . +...+. .++..|++|++...+ ..|.|.
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 322100 00 0111111 00 0 001122 344567799887654 578899
Q ss_pred ECCCCceeEEecCCCCCeEEEEEeCC--EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECC
Q 008820 368 SLLDGTLSCTMSGHKSAVSTLAVCNG--VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES 445 (552)
Q Consensus 368 d~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 445 (552)
++........|....+.|.++.|++. +|++++ ...|++||+.....+..+... ....+.++++|.|..|+.|+.|
T Consensus 552 QLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg--~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 552 QLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTG--SKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred ecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcC--CeeeeeeeecCCCCeEEEecCC
Confidence 99877777777767788999999944 666555 468999999987777666543 3344558999999999999999
Q ss_pred CcEEEEeCC---cceeeeecccceEEEEEecC--CEEEEEeCCCeEEEEe------cCCCeeeeeec-cC-CCcccCcce
Q 008820 446 GSIKVWRND---KFMKSMQTHKGSVFAVFLEG--KWLFTGGWDKTVSVQE------LAGDEFEEDVI-PT-GAIPCGSVI 512 (552)
Q Consensus 446 g~i~iwd~~---~~~~~~~~h~~~v~~v~~~~--~~l~sgs~dg~i~iwd------~~~~~~~~~~~-~~-~~~~~~~~v 512 (552)
+.+..+|+. ++.+.+..|...++++++.. .++++|+.||++.||- +..+.+..... .. +.......|
T Consensus 629 ~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gV 708 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGV 708 (733)
T ss_pred CeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccce
Confidence 999999954 68889999999999999854 5799999999999984 32222222211 11 111224458
Q ss_pred EEEEEeCCe--EEEEeCCCeEEEE
Q 008820 513 TALLYWQGK--LFVGCADRTVKIA 534 (552)
Q Consensus 513 ~~l~~~~~~--l~s~s~Dg~v~iw 534 (552)
....|+|.. |++++.||+|++|
T Consensus 709 Ld~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 709 LDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EeecccCCCceEEecCCCceEEee
Confidence 888999865 9999999999998
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-19 Score=172.76 Aligned_cols=269 Identities=16% Similarity=0.152 Sum_probs=188.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCce
Q 008820 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWR 341 (552)
Q Consensus 262 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 341 (552)
++.++|++.|+.|++||+.+++.+..+..+.. +.+++|+|++..++++++.++.|++||..+++....+. ....
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~~~-- 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP---SGPD-- 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---CCCC--
Confidence 46789999999999999999999998886644 67899999887666788899999999998764332222 1111
Q ss_pred eeeEEEEeeCCCEEEE-eeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-C-CEEEEEeCCC-cEEEEECCCCceeEE
Q 008820 342 YSGIHALTTSGRYLYT-GSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-N-GVLYSGSRDG-TIRLWSLSDHSLLTV 417 (552)
Q Consensus 342 ~~~~~~~~~~~~~l~s-gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~-~~l~s~~~dg-~i~iwd~~~~~~~~~ 417 (552)
.....++++++.+++ ++.|+.|++||+.+++.+..+.. ...+.+++|+ + ..+++++.++ .+..||..+++....
T Consensus 75 -~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~ 152 (300)
T TIGR03866 75 -PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN 152 (300)
T ss_pred -ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE
Confidence 123468888886654 55689999999999888777763 3346788998 3 3777777665 577889988877665
Q ss_pred EecCCCCceEEEEEEcCCCCEEEEE-ECCCcEEEEeCCc--ceeeeeccc-----ce--E--EEEEecCCEEEE-EeCCC
Q 008820 418 LEEDSSGAVSSVLSLTAVQHTLVVS-HESGSIKVWRNDK--FMKSMQTHK-----GS--V--FAVFLEGKWLFT-GGWDK 484 (552)
Q Consensus 418 ~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg~i~iwd~~~--~~~~~~~h~-----~~--v--~~v~~~~~~l~s-gs~dg 484 (552)
..... ... .+.|++++++++++ ..++.|++||..+ ....+..+. .. . ..+++++++++. .+.++
T Consensus 153 ~~~~~--~~~-~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 153 VLVDQ--RPR-FAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN 229 (300)
T ss_pred EEcCC--Ccc-EEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC
Confidence 54332 122 36899999988655 4689999999764 333333221 11 1 223458887554 45567
Q ss_pred eEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEE-eCCCeEEEEEecCCcceeEEEec
Q 008820 485 TVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVG-CADRTVKIALCNRQIPEIFSLLL 548 (552)
Q Consensus 485 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~-s~Dg~v~iw~~~~~~~~~~~~~g 548 (552)
.+.+||+.+.+....... ...+.+++|+| ..|+++ +.+|.|++||+. +...+.++..
T Consensus 230 ~i~v~d~~~~~~~~~~~~------~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~-~~~~~~~~~~ 289 (300)
T TIGR03866 230 RVAVVDAKTYEVLDYLLV------GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA-ALKVIKSIKV 289 (300)
T ss_pred eEEEEECCCCcEEEEEEe------CCCcceEEECCCCCEEEEEcCCCCeEEEEECC-CCcEEEEEEc
Confidence 899999988766544322 33577899985 346665 569999999998 4555555543
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-20 Score=188.83 Aligned_cols=269 Identities=20% Similarity=0.284 Sum_probs=205.7
Q ss_pred CCccccceeeecCcceEEEee--CCCeEEEEE---------------------eecCccceEEEEEc--CCEEEEEeCCC
Q 008820 218 DGADIDQARAAGGVKDLVNGL--SKGNVKFKD---------------------LQGHRDCVTGLAVG--GGFLFSSSFDK 272 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------------------l~~H~~~V~~l~~s--~~~l~s~s~dg 272 (552)
.+..+.++...+++..++++. .++++.+|. +..|.+.|+|+.|+ |++||+||.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 334477888888888888888 676666776 35699999999999 99999999999
Q ss_pred cEEEEeCCC------------------CeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcccccc
Q 008820 273 SIHVWSLKD------------------FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKW 334 (552)
Q Consensus 273 ~I~iwd~~~------------------~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 334 (552)
.|.||+... .+++..+.+|...|.+++|+|++ .++++++.|++|.+||..+.. .+..+
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~---~~~vl 167 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFE---LLKVL 167 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccce---eeeee
Confidence 999998762 24678889999999999999954 588999999999999998763 33344
Q ss_pred ccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCC------CCeEEEEEe-CC-EEEEEe----CCC
Q 008820 335 NEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHK------SAVSTLAVC-NG-VLYSGS----RDG 402 (552)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~------~~v~~l~~~-~~-~l~s~~----~dg 402 (552)
..|... +. -..|.|-|++|++-+.|++|++|+..+....+.+.++- ....-+.|+ ++ +|++.. .-.
T Consensus 168 ~~H~s~-VK-Gvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~ 245 (942)
T KOG0973|consen 168 RGHQSL-VK-GVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKS 245 (942)
T ss_pred eccccc-cc-ceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcc
Confidence 444332 11 23678889999999999999999988777777765443 345778888 44 776653 345
Q ss_pred cEEEEECCCCceeEEEecCCCCceEEEEEEcCC-------------CC----EEEEEECCCcEEEEeCCcc--e-eeeec
Q 008820 403 TIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAV-------------QH----TLVVSHESGSIKVWRNDKF--M-KSMQT 462 (552)
Q Consensus 403 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~-------------~~----~l~~g~~dg~i~iwd~~~~--~-~~~~~ 462 (552)
++.|.+-.+.+.-..+-+|.. .+. ++.|+|. .+ .+|+|+.|++|.||....+ + ....-
T Consensus 246 ~~~IieR~tWk~~~~LvGH~~-p~e-vvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l 323 (942)
T KOG0973|consen 246 TIAIIERGTWKVDKDLVGHSA-PVE-VVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL 323 (942)
T ss_pred eeEEEecCCceeeeeeecCCC-ceE-EEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh
Confidence 688888777777777777754 443 3677652 11 6889999999999996432 2 22233
Q ss_pred ccceEEEEEe--cCCEEEEEeCCCeEEEEecCCC
Q 008820 463 HKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGD 494 (552)
Q Consensus 463 h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~ 494 (552)
...+|..++| ||..|+.+|.||+|.++.++..
T Consensus 324 f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 324 FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 4678999888 8999999999999999988754
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-20 Score=161.97 Aligned_cols=239 Identities=17% Similarity=0.318 Sum_probs=172.9
Q ss_pred ecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCC----CeEEEEEeCCCCCeEEEEEe-cCCCCEEEEEcCCCcEEEEe
Q 008820 249 QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD----FSHVHTFKGHDHKVMAVVYV-DEDQPLCISGDSGGGIFVWS 321 (552)
Q Consensus 249 ~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~----~~~~~~~~~h~~~v~~v~~~-~~~~~~l~s~~~dg~i~vwd 321 (552)
.+|.+-|+++.|+ |+++|||+.|++|+|||.++ ..+....+.|.+.|..|.|. |.-+..+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4799999999998 99999999999999999643 35667788999999999996 45577999999999999998
Q ss_pred CCCCCCCcc------ccccccCCCceeeeEEEEeeC--CCEEEEeeCCCcEEEEECCCC------ceeEEec-------C
Q 008820 322 FSFPLGHEP------LKKWNEEKDWRYSGIHALTTS--GRYLYTGSGDRTIKAWSLLDG------TLSCTMS-------G 380 (552)
Q Consensus 322 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~l~sgs~dg~i~iwd~~~~------~~~~~~~-------~ 380 (552)
-........ ...+..... ... -..|.|. |-.+++++.||.++||+.-.. .+...+. .
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~Dsrs-sV~-DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRS-SVT-DVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred ecccccccccceeEEEEEeecCCc-cee-EEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 642211111 111111111 111 1244443 558999999999999987543 2222222 4
Q ss_pred CCCCeEEEEEe-----CCEEEEEeCC-----CcEEEEECCCCc----eeEEEecCCCCceEEEEEEcCCC----CEEEEE
Q 008820 381 HKSAVSTLAVC-----NGVLYSGSRD-----GTIRLWSLSDHS----LLTVLEEDSSGAVSSVLSLTAVQ----HTLVVS 442 (552)
Q Consensus 381 h~~~v~~l~~~-----~~~l~s~~~d-----g~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~s~~~----~~l~~g 442 (552)
+..+..|+.|+ ..+|+.|+.+ +.++||....+. .+..+. .+...+.. ++|.|+- ..|+++
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~d-i~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRD-ISWAPNIGRSYHLLAVA 245 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCccee-eeeccccCCceeeEEEe
Confidence 66778899998 2377777766 478888775433 233344 33455665 6888863 579999
Q ss_pred ECCCcEEEEeCCc----------------------ceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecC
Q 008820 443 HESGSIKVWRNDK----------------------FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 443 ~~dg~i~iwd~~~----------------------~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~ 492 (552)
+.|| |+||.++. .+..+..|.+.|..+.| .|..|++.|.||.||+|...
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999 99998541 23456789999999998 79999999999999999764
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=169.58 Aligned_cols=232 Identities=19% Similarity=0.322 Sum_probs=165.7
Q ss_pred eecCccceEEEEEc----CCEEEEEeCCCcEEEEeCCC----------------CeEEEEEeCCCCCeEEEEEecCCCCE
Q 008820 248 LQGHRDCVTGLAVG----GGFLFSSSFDKSIHVWSLKD----------------FSHVHTFKGHDHKVMAVVYVDEDQPL 307 (552)
Q Consensus 248 l~~H~~~V~~l~~s----~~~l~s~s~dg~I~iwd~~~----------------~~~~~~~~~h~~~v~~v~~~~~~~~~ 307 (552)
..+|.+.|+.+..+ ..+.++=+..|.|+|||+.. .+++.++.+|...=++++|+|-...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g- 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG- 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-
Confidence 34677777777666 45566667889999999742 2445556666666666666653222
Q ss_pred EEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCcee---EEecCCCCC
Q 008820 308 CISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLS---CTMSGHKSA 384 (552)
Q Consensus 308 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~---~~~~~h~~~ 384 (552)
.+++|..-+.|++|...++.-. ..+.+|+..
T Consensus 226 ----------------------------------------------~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~S 259 (440)
T KOG0302|consen 226 ----------------------------------------------RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKS 259 (440)
T ss_pred ----------------------------------------------ccccCccccceEeeeeccCceeecCccccccccc
Confidence 3455555556666666554322 245679999
Q ss_pred eEEEEEe---CCEEEEEeCCCcEEEEECCCCce---eEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC----
Q 008820 385 VSTLAVC---NGVLYSGSRDGTIRLWSLSDHSL---LTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND---- 454 (552)
Q Consensus 385 v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~---- 454 (552)
|-.++|+ ++.|++||.||+|+|||+|.+.. +.+ +.+ .+- ..+++|+.+..+|++|+.||+++|||++
T Consensus 260 VEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh-~sD-VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~ 336 (440)
T KOG0302|consen 260 VEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAH-NSD-VNVISWNRREPLLASGGDDGTLSIWDLRQFKS 336 (440)
T ss_pred hhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-ecc-CCc-eeeEEccCCcceeeecCCCceEEEEEhhhccC
Confidence 9999998 56999999999999999999843 333 333 333 4457999888899999999999999976
Q ss_pred -cceeeeecccceEEEEEe---cCCEEEEEeCCCeEEEEecCCCee--------e---------eeeccCCCcccCcceE
Q 008820 455 -KFMKSMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQELAGDEF--------E---------EDVIPTGAIPCGSVIT 513 (552)
Q Consensus 455 -~~~~~~~~h~~~v~~v~~---~~~~l~sgs~dg~i~iwd~~~~~~--------~---------~~~~~~~~~~~~~~v~ 513 (552)
+++..++.|..+|+++.| +...|+++|.|..|.+||+.-..- . ..+.+ .....+.
T Consensus 337 ~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVH----qGQke~K 412 (440)
T KOG0302|consen 337 GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVH----QGQKEVK 412 (440)
T ss_pred CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEe----cchhHhh
Confidence 477899999999999998 478899999999999999863211 0 01111 1244577
Q ss_pred EEEEe---CCeEEEEeCCCeEEEE
Q 008820 514 ALLYW---QGKLFVGCADRTVKIA 534 (552)
Q Consensus 514 ~l~~~---~~~l~s~s~Dg~v~iw 534 (552)
.+.|+ |+.+++.+.||. .||
T Consensus 413 evhWH~QiPG~lvsTa~dGf-nVf 435 (440)
T KOG0302|consen 413 EVHWHRQIPGLLVSTAIDGF-NVF 435 (440)
T ss_pred hheeccCCCCeEEEecccce-eEE
Confidence 78888 578999999984 444
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.8e-20 Score=170.61 Aligned_cols=283 Identities=14% Similarity=0.165 Sum_probs=201.2
Q ss_pred EeecCccceEEEEEc---C-CEEEEEeCCCcEEEEeCCC----CeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEE
Q 008820 247 DLQGHRDCVTGLAVG---G-GFLFSSSFDKSIHVWSLKD----FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIF 318 (552)
Q Consensus 247 ~l~~H~~~V~~l~~s---~-~~l~s~s~dg~I~iwd~~~----~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~ 318 (552)
..+-|.+.|++++|+ . +++++|+.-|.|-+||+.+ ..-+..+..|..+|.++.|+|.+...+++.|.||+|+
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence 356788999999999 3 7899999999999999952 2335667889999999999999999999999999999
Q ss_pred EEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCce-eEEecCCCCCeEEEEEe---CCE
Q 008820 319 VWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTL-SCTMSGHKSAVSTLAVC---NGV 394 (552)
Q Consensus 319 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~---~~~ 394 (552)
+-|++..........- ..........++.+...++.|..=|...+||.+++.. ...+.-|...|++|+++ +.+
T Consensus 261 ~~D~~~~i~e~v~s~~---~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLD---TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeeecchhhHHHhhcC---ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 9999865332222211 1112222334455555677777777999999997655 66677799999999999 459
Q ss_pred EEEEeCCCcEEEEECCCCceeE---EEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC----c--ceeeeecccc
Q 008820 395 LYSGSRDGTIRLWSLSDHSLLT---VLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND----K--FMKSMQTHKG 465 (552)
Q Consensus 395 l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~----~--~~~~~~~h~~ 465 (552)
++++|.|++.+|||+|.-.... .....|...+.+ ..|||.+..|++.+.|..|+|||.. . +...+ .|..
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~s-AyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I-~Hn~ 415 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNS-AYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI-PHNN 415 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccceeee-eEEcCCCCceEeeccCCceEEeecccccccCCcccee-eccC
Confidence 9999999999999998743322 122233444555 6999999889999999999999963 1 22222 2221
Q ss_pred ----eEEE----EEecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEE-EeCCCeEEEE
Q 008820 466 ----SVFA----VFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFV-GCADRTVKIA 534 (552)
Q Consensus 466 ----~v~~----v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s-~s~Dg~v~iw 534 (552)
+++- ..|+..++++|-.-..|-|+|-..++....+..... .....-..|+| +.+++ ++..|.|+||
T Consensus 416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~---~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPES---STIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred cccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccc---cccccceeecccccceeccCCccceEEEE
Confidence 2221 234888999999999999999998875554333221 12222346665 33555 5567888888
Q ss_pred Eec
Q 008820 535 LCN 537 (552)
Q Consensus 535 ~~~ 537 (552)
.-+
T Consensus 493 t~k 495 (498)
T KOG4328|consen 493 TNK 495 (498)
T ss_pred ecC
Confidence 654
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.9e-20 Score=161.95 Aligned_cols=268 Identities=17% Similarity=0.196 Sum_probs=202.2
Q ss_pred ccceeeecCcceEEEeeCCCeEEEEEe---------ecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeC
Q 008820 222 IDQARAAGGVKDLVNGLSKGNVKFKDL---------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKG 290 (552)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 290 (552)
..+..|+..+..++.|..+|.+.+|+| .+|..+|++++|+ |+.|+|+|.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 457889999999999999999999985 6899999999999 9999999999999999999999999887
Q ss_pred CCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECC
Q 008820 291 HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLL 370 (552)
Q Consensus 291 h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~ 370 (552)
..++|..+.|+|...+.++++-.+..-.+-++..+.. ..+..-.............+.+.|+++++|...|.+.++|..
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 6789999999998888877777666666777664221 111111111111111122577889999999999999999999
Q ss_pred CCceeEEecCCC-CCeEEEEEe--CCEEEEEeCCCcEEEEECCCC-------ce--eEEEecCCCCceEEEEEEcCCCCE
Q 008820 371 DGTLSCTMSGHK-SAVSTLAVC--NGVLYSGSRDGTIRLWSLSDH-------SL--LTVLEEDSSGAVSSVLSLTAVQHT 438 (552)
Q Consensus 371 ~~~~~~~~~~h~-~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~-------~~--~~~~~~~~~~~~~~~~~~s~~~~~ 438 (552)
+.+++..++-.. ..|..+.++ +..|+.-+.|..||.|+++.- ++ .+.+..--.......++|+.+|.+
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 999998887655 678888888 559999999999999998631 11 122211111122333689999999
Q ss_pred EEEEEC-CCcEEEEe--CCcceeeeeccc-ceEEEEEec--CCEEEEEeCCCeEEEEecC
Q 008820 439 LVVSHE-SGSIKVWR--NDKFMKSMQTHK-GSVFAVFLE--GKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 439 l~~g~~-dg~i~iwd--~~~~~~~~~~h~-~~v~~v~~~--~~~l~sgs~dg~i~iwd~~ 492 (552)
++.|+. ...++||. ++++++.+.|.. .....+.|+ ...+++- ..|.+++|...
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 988764 45799997 678899998887 455667764 3344444 67899999764
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-20 Score=171.54 Aligned_cols=264 Identities=19% Similarity=0.249 Sum_probs=178.9
Q ss_pred EEeCCC-cEEEEeCCCCeEEEEEeCC-CCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeee
Q 008820 267 SSSFDK-SIHVWSLKDFSHVHTFKGH-DHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSG 344 (552)
Q Consensus 267 s~s~dg-~I~iwd~~~~~~~~~~~~h-~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 344 (552)
+++.|. ++.+||+.+|....++++. ...-.++.... +.+++++-..-..+.+|.+............. ....
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~-~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~P-----g~v~ 85 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALN-NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLP-----GPVH 85 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhhc-hhheeeecccCccccccccCchhhhhhhcccc-----ccee
Confidence 344454 4999999999999999875 22222222221 24444444556689999887443222111111 1112
Q ss_pred EEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeCCCcEEEEECC---------CCc
Q 008820 345 IHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLS---------DHS 413 (552)
Q Consensus 345 ~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~---------~~~ 413 (552)
....+++|.+++.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+ |+ +|++||.||.|.+|++- +-+
T Consensus 86 al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~ 165 (476)
T KOG0646|consen 86 ALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVK 165 (476)
T ss_pred eeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcc
Confidence 33556778888888899999999999999999999999999999999 33 99999999999999873 234
Q ss_pred eeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeeecccceEEEE--EecCCEEEEEeCCCeEEEE
Q 008820 414 LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAV--FLEGKWLFTGGWDKTVSVQ 489 (552)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~h~~~v~~v--~~~~~~l~sgs~dg~i~iw 489 (552)
+.+.+..|.-....-.+.+.+....+++++.|.++++||+.. .+.++. ...++.++ ++.+..++.|+.+|.|.+.
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQN 244 (476)
T ss_pred ceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEee
Confidence 566676664333222233344457899999999999999653 444433 23445554 4578999999999999998
Q ss_pred ecCCCe--ee---ee---e---ccCCCcccC--cceEEEEEe-CC-eEEEEeCCCeEEEEEec
Q 008820 490 ELAGDE--FE---ED---V---IPTGAIPCG--SVITALLYW-QG-KLFVGCADRTVKIALCN 537 (552)
Q Consensus 490 d~~~~~--~~---~~---~---~~~~~~~~~--~~v~~l~~~-~~-~l~s~s~Dg~v~iw~~~ 537 (552)
++.... .. .. . .......+. ..|++++.+ ++ .|++|+.||.|+|||+.
T Consensus 245 ~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 245 LLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred ehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 875322 00 00 0 000011223 489999998 54 59999999999999986
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=174.70 Aligned_cols=269 Identities=13% Similarity=0.187 Sum_probs=200.1
Q ss_pred CcEEEEeCCCCeEEEEEeCCC--CCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcc-ccccccCCCceeeeEEEE
Q 008820 272 KSIHVWSLKDFSHVHTFKGHD--HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP-LKKWNEEKDWRYSGIHAL 348 (552)
Q Consensus 272 g~I~iwd~~~~~~~~~~~~h~--~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 348 (552)
.++++||.........+..|+ ..+.++.|.......+++.+.|..|++|.-.......+ +....+.. .. +.+.
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~---~~-Cv~~ 87 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDN---AF-CVAC 87 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccch---HH-HHhh
Confidence 379999997665544444333 34888999775544455566788999997553311111 11111111 11 1122
Q ss_pred eeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCce
Q 008820 349 TTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAV 426 (552)
Q Consensus 349 ~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 426 (552)
.....++++|+..+.|+|||++...+.+.+++|++.|+++.++ +.+|++++..|.|.+..+.++.....+.... +..
T Consensus 88 ~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s-gqs 166 (673)
T KOG4378|consen 88 ASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS-GQS 166 (673)
T ss_pred hhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC-CCe
Confidence 2234699999999999999999777778889999999999998 6699999999999999999998888887764 444
Q ss_pred EEEEEEcCCCCE-EEEEECCCcEEEEeCCc--c-eeeeecccceEEEEEe---cCCEEEEEeCCCeEEEEecCCCeeeee
Q 008820 427 SSVLSLTAVQHT-LVVSHESGSIKVWRNDK--F-MKSMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQELAGDEFEED 499 (552)
Q Consensus 427 ~~~~~~s~~~~~-l~~g~~dg~i~iwd~~~--~-~~~~~~h~~~v~~v~~---~~~~l~sgs~dg~i~iwd~~~~~~~~~ 499 (552)
...+.+++..+. |.+++.+|.|.+||... + ..-.+.|..+...++| +...|++.+.|..|.+||.........
T Consensus 167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~ 246 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDR 246 (673)
T ss_pred EEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccce
Confidence 445788887664 56788999999999653 2 3345679999887776 788999999999999999987655544
Q ss_pred eccCCCcccCcceEEEEEeC-Ce-EEEEeCCCeEEEEEecCCcceeEEEecccc
Q 008820 500 VIPTGAIPCGSVITALLYWQ-GK-LFVGCADRTVKIALCNRQIPEIFSLLLHIN 551 (552)
Q Consensus 500 ~~~~~~~~~~~~v~~l~~~~-~~-l~s~s~Dg~v~iw~~~~~~~~~~~~~gh~~ 551 (552)
+.. ..+.+.++|.+ +. |+.|+..|.|..||+.....++..+..|.+
T Consensus 247 l~y------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~ 294 (673)
T KOG4378|consen 247 LTY------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA 294 (673)
T ss_pred eee------cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc
Confidence 443 56789999995 43 888999999999999988888888887753
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-20 Score=179.77 Aligned_cols=235 Identities=16% Similarity=0.223 Sum_probs=186.2
Q ss_pred cceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecC--CCCEEEEEcCCCcEEEEeCCCCCCC
Q 008820 253 DCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDE--DQPLCISGDSGGGIFVWSFSFPLGH 328 (552)
Q Consensus 253 ~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~ 328 (552)
..|++++.+ +++||+|..-|+++||++.+-+....+..|...|.|+.|+.. +..+|++++.|..|.++|+... -
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn--y 537 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN--Y 537 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc--c
Confidence 478999999 999999999999999999999999999999999999999853 4568999999999999998743 2
Q ss_pred ccccccccCCCceeeeEEEEeeCC--CEEEEeeCCCcEEEEECCCCceeEEecCC-----CCCeEEEEEeC--CEEEEEe
Q 008820 329 EPLKKWNEEKDWRYSGIHALTTSG--RYLYTGSGDRTIKAWSLLDGTLSCTMSGH-----KSAVSTLAVCN--GVLYSGS 399 (552)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~--~~l~sgs~dg~i~iwd~~~~~~~~~~~~h-----~~~v~~l~~~~--~~l~s~~ 399 (552)
..+++...|.. ....+ .|.-+| ...++++.|+.|.+--.+.......+..| ...++.+++.+ +++++++
T Consensus 538 ~l~qtld~HSs-sITsv-KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c 615 (1080)
T KOG1408|consen 538 DLVQTLDGHSS-SITSV-KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC 615 (1080)
T ss_pred chhhhhccccc-ceeEE-EEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence 33444444332 22223 233333 38899999998765433322222223222 34677888874 4999999
Q ss_pred CCCcEEEEECCCCceeEEEecCCC--CceEEEEEEcCCCCEEEEEECCCcEEEEe--CCcceeeeecccceEEEEEe--c
Q 008820 400 RDGTIRLWSLSDHSLLTVLEEDSS--GAVSSVLSLTAVQHTLVVSHESGSIKVWR--NDKFMKSMQTHKGSVFAVFL--E 473 (552)
Q Consensus 400 ~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~l~~g~~dg~i~iwd--~~~~~~~~~~h~~~v~~v~~--~ 473 (552)
.|..|+|||+.+++..+.|++.+. +.... +...|.|.++++.+.|.++.++| .++++....+|...|+.+.| |
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIK-v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nD 694 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIK-VILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLND 694 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEE-EEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeeccc
Confidence 999999999999999999987543 33333 57899999999999999999999 57899999999999999998 8
Q ss_pred CCEEEEEeCCCeEEEEecC
Q 008820 474 GKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 474 ~~~l~sgs~dg~i~iwd~~ 492 (552)
.++|++.+.||.|.+|.+.
T Consensus 695 CkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 695 CKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred chhheeecCCceEEEEECc
Confidence 8999999999999999875
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.6e-19 Score=170.79 Aligned_cols=279 Identities=19% Similarity=0.273 Sum_probs=211.1
Q ss_pred ecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCe-EEEEEeCC-CCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCC
Q 008820 249 QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS-HVHTFKGH-DHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF 324 (552)
Q Consensus 249 ~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~-~~~~~~~h-~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 324 (552)
.--..+|.++||+ .+.||.+-.||.|-||++...= +...+.++ +..|.+++|.+ +. .|.+.+.+|.|.-||+.+
T Consensus 22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~-RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GG-RLFSSGLSGSITEWDLHT 99 (691)
T ss_pred eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CC-eEEeecCCceEEEEeccc
Confidence 3446789999999 8889999999999999998653 34455554 46899999985 33 568999999999999987
Q ss_pred CCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeE--EecCCCCCeEEEEEe-CC-EEEEEeC
Q 008820 325 PLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSC--TMSGHKSAVSTLAVC-NG-VLYSGSR 400 (552)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~--~~~~h~~~v~~l~~~-~~-~l~s~~~ 400 (552)
.+.......... ..-..+.+|.+..++.|+.||.++.++...++... .+...++.|.+++|+ ++ .+++|+.
T Consensus 100 lk~~~~~d~~gg-----~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~ 174 (691)
T KOG2048|consen 100 LKQKYNIDSNGG-----AIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI 174 (691)
T ss_pred CceeEEecCCCc-----ceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc
Confidence 655444333221 11234667778899999999988888887776654 345567899999999 44 6999999
Q ss_pred CCcEEEEECCCCceeEEEecC-------CCCceEEEEEEcCCCCEEEEEECCCcEEEEe--CCcceeeeecccceEEEEE
Q 008820 401 DGTIRLWSLSDHSLLTVLEED-------SSGAVSSVLSLTAVQHTLVVSHESGSIKVWR--NDKFMKSMQTHKGSVFAVF 471 (552)
Q Consensus 401 dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd--~~~~~~~~~~h~~~v~~v~ 471 (552)
||.|++||..++..++..... ....+.+++.. ....|++|...|+|.+|| .+++++.+..|.+.|.++.
T Consensus 175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~La 252 (691)
T KOG2048|consen 175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALA 252 (691)
T ss_pred CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEE
Confidence 999999999999877633211 12334444334 345799999999999999 4678999999999999998
Q ss_pred e--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEec
Q 008820 472 L--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCN 537 (552)
Q Consensus 472 ~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~ 537 (552)
. ++.++++++.|+.|..|...+......... ....+...|.+++..+..+++|+.|..+.+-...
T Consensus 253 v~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~-~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 253 VADNEDRVFSAGVDPKIIQYSLTTNKSEWVINS-RRDLHAHDVRSMAVIENALISGGRDFTLAICSSR 319 (691)
T ss_pred EcCCCCeEEEccCCCceEEEEecCCccceeeec-cccCCcccceeeeeecceEEecceeeEEEEcccc
Confidence 6 778999999999999998876644222111 1122355689999999999999999999887654
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=173.54 Aligned_cols=241 Identities=19% Similarity=0.213 Sum_probs=172.7
Q ss_pred eEEEEEecC------CCCEEEEEcCCCcEEEEeCCCCCCCccccccc-------------c-CCCceeeeEEEEeeCC--
Q 008820 295 VMAVVYVDE------DQPLCISGDSGGGIFVWSFSFPLGHEPLKKWN-------------E-EKDWRYSGIHALTTSG-- 352 (552)
Q Consensus 295 v~~v~~~~~------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~-- 352 (552)
..|++|... .++++|.|+.|..|.|||+.--....+...+. . ....+...+.+++++.
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 356777532 24699999999999999987433222221111 0 0011233334555543
Q ss_pred -CEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe---CCEEEEEeCCCcEEEEECCCCce-eEEEecCCCCceE
Q 008820 353 -RYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSL-LTVLEEDSSGAVS 427 (552)
Q Consensus 353 -~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~ 427 (552)
+.|++||.|.+|++||+.++++..++..|.+.|.++.|+ +..|++|+.|+++.+.|.|.... -..++. .+.+-
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~--~g~VE 333 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF--DGEVE 333 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe--ccceE
Confidence 489999999999999999999999999999999999999 45999999999999999994222 222222 23344
Q ss_pred EEEEEcCC-CCEEEEEECCCcEEEEeCC---cceeeeecccceEEEEEe---cCCEEEEEeCCCeEEEEecCCCeeeeee
Q 008820 428 SVLSLTAV-QHTLVVSHESGSIKVWRND---KFMKSMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQELAGDEFEEDV 500 (552)
Q Consensus 428 ~~~~~s~~-~~~l~~g~~dg~i~iwd~~---~~~~~~~~h~~~v~~v~~---~~~~l~sgs~dg~i~iwd~~~~~~~~~~ 500 (552)
. +.|.|. ...++++..||+|+-+|.| +++.+++.|..+|.++++ ...++++++.|+.|++|++.........
T Consensus 334 k-v~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~ 412 (463)
T KOG0270|consen 334 K-VAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK 412 (463)
T ss_pred E-EEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc
Confidence 4 456554 5677888899999999976 578899999999999997 4568999999999999999755432222
Q ss_pred ccCCCcccCcceEEEEEeC---CeEEEEeCCCeEEEEEecCCcc
Q 008820 501 IPTGAIPCGSVITALLYWQ---GKLFVGCADRTVKIALCNRQIP 541 (552)
Q Consensus 501 ~~~~~~~~~~~v~~l~~~~---~~l~s~s~Dg~v~iw~~~~~~~ 541 (552)
.+... .+...|+++.+ ..++.|+..+.++|||+-...+
T Consensus 413 ~~~~~---~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 413 EHSFK---LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ccccc---ccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 22111 23355566664 4589999999999999974443
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-18 Score=169.38 Aligned_cols=293 Identities=17% Similarity=0.252 Sum_probs=216.6
Q ss_pred eeCCCeEEEEEeecCccceEEEEEcCCEEEEEeCCCcEEEEeCCCC-eE----EEEEeCCCCCeEEEEEecC-CCCEEEE
Q 008820 237 GLSKGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDF-SH----VHTFKGHDHKVMAVVYVDE-DQPLCIS 310 (552)
Q Consensus 237 ~~~~~~~~~~~l~~H~~~V~~l~~s~~~l~s~s~dg~I~iwd~~~~-~~----~~~~~~h~~~v~~v~~~~~-~~~~l~s 310 (552)
....++.....+.+|.+.|.-+..-|.+++++..++.+.||+..++ .. ...++...+.|+++. +|. --+-++.
T Consensus 99 ~~~rgk~i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvv 177 (910)
T KOG1539|consen 99 AYARGKHIRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVV 177 (910)
T ss_pred EEEccceEEEEeccccceEEEEeeecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEE
Confidence 3345666677788999889888888999999999999999998874 11 122233333478775 443 2345789
Q ss_pred EcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCC--CEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEE
Q 008820 311 GDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSG--RYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTL 388 (552)
Q Consensus 311 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l 388 (552)
|+.+|.+.+|++++++....++.+. ..++++.+.+ +.++.|..+|+|.+++++.++.+.+|+...+.|+++
T Consensus 178 Gs~~G~lql~Nvrt~K~v~~f~~~~-------s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~Vtsl 250 (910)
T KOG1539|consen 178 GSSQGRLQLWNVRTGKVVYTFQEFF-------SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSL 250 (910)
T ss_pred eecCCcEEEEEeccCcEEEEecccc-------cceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEE
Confidence 9999999999999887665555543 2345555544 489999999999999999999999998556999999
Q ss_pred EEe-CC--EEEEEeCCCcEEEEECCCCceeEEEecCC-------------------------------------------
Q 008820 389 AVC-NG--VLYSGSRDGTIRLWSLSDHSLLTVLEEDS------------------------------------------- 422 (552)
Q Consensus 389 ~~~-~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------------------------------------- 422 (552)
+|. |+ .+++|+..|.+.+||+...+........|
T Consensus 251 SFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R 330 (910)
T KOG1539|consen 251 SFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSR 330 (910)
T ss_pred EeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeec
Confidence 999 44 88899999999999997543322221000
Q ss_pred --------------------------------------------------------------------------------
Q 008820 423 -------------------------------------------------------------------------------- 422 (552)
Q Consensus 423 -------------------------------------------------------------------------------- 422 (552)
T Consensus 331 ~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~ 410 (910)
T KOG1539|consen 331 GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKE 410 (910)
T ss_pred cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhh
Confidence
Q ss_pred ------------------------------C------CceEEEEEEcCCCCEEEEEECCCcEEEEeCCccee--ee---e
Q 008820 423 ------------------------------S------GAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMK--SM---Q 461 (552)
Q Consensus 423 ------------------------------~------~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~--~~---~ 461 (552)
+ .....+++.++.|++.+.|+..|.|.+|++...+. .+ .
T Consensus 411 W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ 490 (910)
T KOG1539|consen 411 WDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP 490 (910)
T ss_pred hcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCc
Confidence 0 01112356778888899999999999999765433 34 4
Q ss_pred cccceEEEEEec--CCEEEEEeCCCeEEEEecCCCeeeeeeccCCC----------------------------------
Q 008820 462 THKGSVFAVFLE--GKWLFTGGWDKTVSVQELAGDEFEEDVIPTGA---------------------------------- 505 (552)
Q Consensus 462 ~h~~~v~~v~~~--~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~---------------------------------- 505 (552)
.|..+|+.++.| ++.+++++.+|.+++||..+..+.........
T Consensus 491 ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR 570 (910)
T KOG1539|consen 491 AHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR 570 (910)
T ss_pred cccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH
Confidence 799999999985 55799999999999999987653322211111
Q ss_pred --cccCcceEEEEEeC-Ce-EEEEeCCCeEEEEEec
Q 008820 506 --IPCGSVITALLYWQ-GK-LFVGCADRTVKIALCN 537 (552)
Q Consensus 506 --~~~~~~v~~l~~~~-~~-l~s~s~Dg~v~iw~~~ 537 (552)
..+...|++++|+| ++ |++++.|++||+||+.
T Consensus 571 ~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 571 EFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred HhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 14678899999995 44 9999999999999997
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-19 Score=175.26 Aligned_cols=281 Identities=16% Similarity=0.220 Sum_probs=203.9
Q ss_pred ecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCC--------------------------------------------
Q 008820 249 QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF-------------------------------------------- 282 (552)
Q Consensus 249 ~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~-------------------------------------------- 282 (552)
.||+++|.++.|+ +..|+++|.|.++.+|...+.
T Consensus 264 ~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlW 343 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLW 343 (764)
T ss_pred cCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEE
Confidence 4999999999999 668999999999999965421
Q ss_pred --------eEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCC-ccccccccCCCceeeeEEEEeeCCC
Q 008820 283 --------SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH-EPLKKWNEEKDWRYSGIHALTTSGR 353 (552)
Q Consensus 283 --------~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (552)
.....+.||.+.|.+++|.|.|+ ++++.+.|.+-|++---..+.. ..+.... .++ +...+.++-+...
T Consensus 344 kt~d~~~w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaRPQ-iHG-yDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 344 KTKDKTFWTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIARPQ-IHG-YDLTCLSFVNEDL 420 (764)
T ss_pred eccCccceeeccccccccccceeeeecCCCC-EEEEeccccceeeecccccccceeeecccc-ccc-ccceeeehccCCc
Confidence 00112347889999999999877 7789999999999864411111 1111111 111 1112223333345
Q ss_pred EEEEeeCCCcEEEEECCCC-------------------------------------------------------------
Q 008820 354 YLYTGSGDRTIKAWSLLDG------------------------------------------------------------- 372 (552)
Q Consensus 354 ~l~sgs~dg~i~iwd~~~~------------------------------------------------------------- 372 (552)
.+++|.....+++|+....
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 7888888888899876321
Q ss_pred ---------------ceeEEecCCCCCeEEEEEe--CCEEEEEeCCC-----cEEEEECCCCceeEEEecCCCCceEEEE
Q 008820 373 ---------------TLSCTMSGHKSAVSTLAVC--NGVLYSGSRDG-----TIRLWSLSDHSLLTVLEEDSSGAVSSVL 430 (552)
Q Consensus 373 ---------------~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 430 (552)
..++++.||...|++++.+ ++++++++... -|++|+..+-...+.+..|.- ....+
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL--TVT~l 578 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL--TVTRL 578 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccce--EEEEE
Confidence 1122345899999999999 55888888654 489999998888888877643 33347
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCc------ceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCC--eeeeee
Q 008820 431 SLTAVQHTLVVSHESGSIKVWRNDK------FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGD--EFEEDV 500 (552)
Q Consensus 431 ~~s~~~~~l~~g~~dg~i~iwd~~~------~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~--~~~~~~ 500 (552)
.||||+++|++.+.|.++.+|...+ .....+.|+.-|.+.+| ++.+++|+|.|.+|++|..... +....+
T Consensus 579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~ 658 (764)
T KOG1063|consen 579 AFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF 658 (764)
T ss_pred EECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh
Confidence 9999999999999999999997432 12346789999999887 8899999999999999999876 333332
Q ss_pred ccCCCcccCcceEEEEEeC-------CeEEEEeCCCeEEEEEec
Q 008820 501 IPTGAIPCGSVITALLYWQ-------GKLFVGCADRTVKIALCN 537 (552)
Q Consensus 501 ~~~~~~~~~~~v~~l~~~~-------~~l~s~s~Dg~v~iw~~~ 537 (552)
...+....|+++++.+ +.+++|-..|.|.+|..+
T Consensus 659 ---a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 659 ---ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ---chhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 2334477899999884 236788999999999976
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.2e-22 Score=191.94 Aligned_cols=208 Identities=24% Similarity=0.426 Sum_probs=173.6
Q ss_pred cceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEE
Q 008820 231 VKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVV 299 (552)
Q Consensus 231 ~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~ 299 (552)
.+.++.+.++..+.+|. |.+|+.+|.++.|+ ..+|++|+.+|+|++||+++++.++++.+|...+.++.
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~ 119 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVD 119 (825)
T ss_pred ceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceee
Confidence 34455555555554443 78999999999999 78899999999999999999999999999999999999
Q ss_pred EecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEec
Q 008820 300 YVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMS 379 (552)
Q Consensus 300 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 379 (552)
|+|-+. +.++|+.|+.+++||.+...+. ..+..+. ....+..|+|+|+++++|+.|.++++||+..|+....|.
T Consensus 120 f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~---~~~~s~~--~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~ 193 (825)
T KOG0267|consen 120 FHPYGE-FFASGSTDTDLKIWDIRKKGCS---HTYKSHT--RVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK 193 (825)
T ss_pred eccceE-EeccccccccceehhhhccCce---eeecCCc--ceeEEEeecCCCceeeccCCcceeeeecccccccccccc
Confidence 999776 5599999999999999854333 3333322 445677999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEeCC--EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCC
Q 008820 380 GHKSAVSTLAVCNG--VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG 446 (552)
Q Consensus 380 ~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 446 (552)
.|.+.+.++.|++. ++++|+.|+++++||+++.+.+....... ..+.+ ..|++++..+.+|....
T Consensus 194 ~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~-~~v~~-~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 194 SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPET-DGVRS-LAFNPDGKIVLSGEQIS 260 (825)
T ss_pred cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCcc-CCcee-eeecCCceeeecCchhh
Confidence 99999999999943 88899999999999999988887776663 33444 69999999998887653
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-18 Score=169.74 Aligned_cols=265 Identities=18% Similarity=0.244 Sum_probs=209.3
Q ss_pred cccceeeecCcceEEEeeCCCeEEEEEe----------ecC-ccceEEEEEc-CCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008820 221 DIDQARAAGGVKDLVNGLSKGNVKFKDL----------QGH-RDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTF 288 (552)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l----------~~H-~~~V~~l~~s-~~~l~s~s~dg~I~iwd~~~~~~~~~~ 288 (552)
.+.+++++...+.++.+..+|.+.+|.+ .|| .+.|.+++|+ +..|.+.+.+|+|.-||+.+++....+
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~ 106 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNI 106 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEe
Confidence 4778888999999999999999999984 344 5689999999 999999999999999999999999999
Q ss_pred eCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEE--EeeCCCEEEEeeCCCcEEE
Q 008820 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHA--LTTSGRYLYTGSGDRTIKA 366 (552)
Q Consensus 289 ~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~sgs~dg~i~i 366 (552)
....+.|.+++.+|.+ ..++.|+.||.+..++...+.... ...+.. ....+.+ +.+++..+++|+.||.|++
T Consensus 107 d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~-~r~l~r----q~sRvLslsw~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 107 DSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITY-KRSLMR----QKSRVLSLSWNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred cCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEE-Eeeccc----ccceEEEEEecCCccEEEecccCceEEE
Confidence 9999999999999865 477889999977777766432111 111111 1223444 4555668999999999999
Q ss_pred EECCCCceeEEe-----cC---CCCCeEEEEEe-CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCC
Q 008820 367 WSLLDGTLSCTM-----SG---HKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQH 437 (552)
Q Consensus 367 wd~~~~~~~~~~-----~~---h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 437 (552)
||+.++..++.. .. ...-|.++.+- ++.|++|..-|+|.+||...+..++.+..+. ..+.+ ++..++++
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~-adVl~-Lav~~~~d 258 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHD-ADVLA-LAVADNED 258 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhh-cceeE-EEEcCCCC
Confidence 999998877622 11 22235666666 8899999999999999999999999888774 34444 68899999
Q ss_pred EEEEEECCCcEEEEeCCcc------eeeeecccceEEEEEecCCEEEEEeCCCeEEEEecCC
Q 008820 438 TLVVSHESGSIKVWRNDKF------MKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAG 493 (552)
Q Consensus 438 ~l~~g~~dg~i~iwd~~~~------~~~~~~h~~~v~~v~~~~~~l~sgs~dg~i~iwd~~~ 493 (552)
.+++++.|+.|..|..... ......|...|.+++.-+..+++|+.|..+.+-....
T Consensus 259 ~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 259 RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSRE 320 (691)
T ss_pred eEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccc
Confidence 9999999999999874322 2234568889999988777999999999999887665
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-17 Score=156.57 Aligned_cols=300 Identities=17% Similarity=0.220 Sum_probs=220.1
Q ss_pred ccccceeeecCcceEEEeeCCCeEEEEEee------------cC-ccceEEEEEc-CCEEEEEeCCCcEEEEeCCCCeEE
Q 008820 220 ADIDQARAAGGVKDLVNGLSKGNVKFKDLQ------------GH-RDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHV 285 (552)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------------~H-~~~V~~l~~s-~~~l~s~s~dg~I~iwd~~~~~~~ 285 (552)
+.+..+.+.+.+..++.....+.+..|++. ++ +.-|.|++|. +.-++||..+|.|.||+..+.+..
T Consensus 201 e~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~ 280 (626)
T KOG2106|consen 201 EVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRIS 280 (626)
T ss_pred ceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEE
Confidence 345667777777777766667777777643 22 3679999999 889999999999999999888888
Q ss_pred EEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEE
Q 008820 286 HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365 (552)
Q Consensus 286 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~ 365 (552)
+....|.+.|.+++...++. |++|+.|..|..|| ..-+....++... ....+..+.+.+.-|+.|...+.|.
T Consensus 281 k~~~aH~ggv~~L~~lr~Gt--llSGgKDRki~~Wd-~~y~k~r~~elPe-----~~G~iRtv~e~~~di~vGTtrN~iL 352 (626)
T KOG2106|consen 281 KQVHAHDGGVFSLCMLRDGT--LLSGGKDRKIILWD-DNYRKLRETELPE-----QFGPIRTVAEGKGDILVGTTRNFIL 352 (626)
T ss_pred eEeeecCCceEEEEEecCcc--EeecCccceEEecc-ccccccccccCch-----hcCCeeEEecCCCcEEEeeccceEE
Confidence 77779999999999987664 56799999999999 3222222222221 1223445555544588888888887
Q ss_pred EEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEE
Q 008820 366 AWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH 443 (552)
Q Consensus 366 iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 443 (552)
.=.++++-.+ ...+|......++.+ .+.+++++.|+.+++|+ ..++..+..... ...+ ..|+|.| .++.|.
T Consensus 353 ~Gt~~~~f~~-~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d--~~~~-~~fhpsg-~va~Gt 425 (626)
T KOG2106|consen 353 QGTLENGFTL-TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIED--PAEC-ADFHPSG-VVAVGT 425 (626)
T ss_pred EeeecCCceE-EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecC--ceeE-eeccCcc-eEEEee
Confidence 7777665444 445688899999988 45999999999999999 566666655442 2333 6999999 999999
Q ss_pred CCCcEEEEeCCcc-eeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-
Q 008820 444 ESGSIKVWRNDKF-MKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ- 519 (552)
Q Consensus 444 ~dg~i~iwd~~~~-~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~- 519 (552)
..|...+.|..+. .-++.....++.++.+ +|.+||.|+.|+.|++|-+.............. .++|+.+.|+.
T Consensus 426 ~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~---gs~ithLDwS~D 502 (626)
T KOG2106|consen 426 ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCS---GSPITHLDWSSD 502 (626)
T ss_pred ccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeec---CceeEEeeecCC
Confidence 9999999997652 2222223667777765 999999999999999999975543333222222 37899999994
Q ss_pred -CeEEEEeCCCeEEEEEec
Q 008820 520 -GKLFVGCADRTVKIALCN 537 (552)
Q Consensus 520 -~~l~s~s~Dg~v~iw~~~ 537 (552)
+.+.+-+.|-.|-.|...
T Consensus 503 s~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 503 SQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred CceEEeccCceEEEEEccc
Confidence 348888999999999443
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-21 Score=188.39 Aligned_cols=218 Identities=21% Similarity=0.392 Sum_probs=185.4
Q ss_pred eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCC
Q 008820 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFP 325 (552)
Q Consensus 248 l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~ 325 (552)
+..|...|.++..- ++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|++..
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E--------------------- 82 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSE--------------------- 82 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcch---------------------
Confidence 45689999988865 8999999999999999998888888899999999999886532
Q ss_pred CCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCc
Q 008820 326 LGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGT 403 (552)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~ 403 (552)
..|++|+.+|+|++||++.++.++++.+|...+.++.|+ ..+.++|+.|+.
T Consensus 83 ---------------------------~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd 135 (825)
T KOG0267|consen 83 ---------------------------RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTD 135 (825)
T ss_pred ---------------------------hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccccccc
Confidence 346677788888888888888899999999999999999 458899999999
Q ss_pred EEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeC--CcceeeeecccceEEEEEe--cCCEEEE
Q 008820 404 IRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFMKSMQTHKGSVFAVFL--EGKWLFT 479 (552)
Q Consensus 404 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~--~~~~~~~~~h~~~v~~v~~--~~~~l~s 479 (552)
+++||.+...+.+.+..+ .. +..++.|+|+|+++++|++|.+++|||. ++....|+.|.+.+.++.+ ..-.+++
T Consensus 136 ~~iwD~Rk~Gc~~~~~s~-~~-vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~ 213 (825)
T KOG0267|consen 136 LKIWDIRKKGCSHTYKSH-TR-VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAP 213 (825)
T ss_pred ceehhhhccCceeeecCC-cc-eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhcc
Confidence 999999988899999884 33 4445799999999999999999999995 5688899999999999987 5668889
Q ss_pred EeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC
Q 008820 480 GGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG 520 (552)
Q Consensus 480 gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 520 (552)
||.|+++++||+++.+........ ...|.+..|+++
T Consensus 214 Gs~d~tv~f~dletfe~I~s~~~~-----~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 214 GSSDRTVRFWDLETFEVISSGKPE-----TDGVRSLAFNPD 249 (825)
T ss_pred CCCCceeeeeccceeEEeeccCCc-----cCCceeeeecCC
Confidence 999999999999987665544332 556899999954
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.4e-19 Score=155.49 Aligned_cols=269 Identities=9% Similarity=0.119 Sum_probs=191.2
Q ss_pred eEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcccc
Q 008820 255 VTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLK 332 (552)
Q Consensus 255 V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 332 (552)
-.|+.|+ |.+||.|+.||.|.|||+.|...-+.+.+|..+|.+++|+++|. .|+++|.|..|.+||+..+...+.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCC-EeeeecCCceeEEEeccCCCceeEEE
Confidence 6789999 99999999999999999999999899999999999999999765 77999999999999999887555444
Q ss_pred ccccCCCceeeeEEEEeeCC-CEEEEeeCCCcEEEEECCCCceeEEe-c-CCCC----CeEEEEEe--CCEEEEEeCCCc
Q 008820 333 KWNEEKDWRYSGIHALTTSG-RYLYTGSGDRTIKAWSLLDGTLSCTM-S-GHKS----AVSTLAVC--NGVLYSGSRDGT 403 (552)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~-~-~h~~----~v~~l~~~--~~~l~s~~~dg~ 403 (552)
.... ..-..++|.. +.+++.-.+..-.+-++..+ ++++ . ...+ .-.+..|. ++++++|...|.
T Consensus 105 f~sp------v~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk 176 (405)
T KOG1273|consen 105 FDSP------VWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK 176 (405)
T ss_pred ccCc------cceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccCCCCEEEEecCcce
Confidence 3211 1112344433 34444444444555555442 2222 1 1111 11222354 669999999999
Q ss_pred EEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcceee-----------eec--ccceEEEE
Q 008820 404 IRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKS-----------MQT--HKGSVFAV 470 (552)
Q Consensus 404 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~-----------~~~--h~~~v~~v 470 (552)
+.++|..+.+++..++......+.. +-++..|+.++.-+.|..|+.|+.+..... ++. ....-.++
T Consensus 177 llv~~a~t~e~vas~rits~~~IK~-I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~c 255 (405)
T KOG1273|consen 177 LLVYDAETLECVASFRITSVQAIKQ-IIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKC 255 (405)
T ss_pred EEEEecchheeeeeeeechheeeeE-EEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhe
Confidence 9999999999998888765344444 588999999999999999999986532221 111 11122233
Q ss_pred Ee--cCCEEEEEeC-CCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCe-EEEEeCCCeEEEEEec
Q 008820 471 FL--EGKWLFTGGW-DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK-LFVGCADRTVKIALCN 537 (552)
Q Consensus 471 ~~--~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~s~s~Dg~v~iw~~~ 537 (552)
.| +|.+++.|+. ...++||.-..+.+...+.... ......+.|++-+ ++..-..|.|+||...
T Consensus 256 cfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k----gE~l~DV~whp~rp~i~si~sg~v~iw~~~ 322 (405)
T KOG1273|consen 256 CFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK----GEELLDVNWHPVRPIIASIASGVVYIWAVV 322 (405)
T ss_pred eecCCccEEEeccccceeEEEEecCCcceeeeecCCc----hhheeecccccceeeeeeccCCceEEEEee
Confidence 44 8888887774 4579999999998887766542 3457788898865 4444488999999876
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.3e-19 Score=155.72 Aligned_cols=245 Identities=16% Similarity=0.214 Sum_probs=168.0
Q ss_pred EEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCC--CccccccccCCCceeeeEEEEeeCCC-EEEEeeCCC
Q 008820 286 HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLG--HEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDR 362 (552)
Q Consensus 286 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~dg 362 (552)
..+++|.+.|++++|+.+|. .|++++.|++|++|+++.-.. .+.++.-. ..+ + .....|+||-+ .+++.-...
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~d-h-pT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYD-H-PTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhhhccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHhhccc-cCC-C-ceEEEECCCcceEEEEEccCC
Confidence 45789999999999998766 679999999999999875221 11121111 111 2 23457888877 555566667
Q ss_pred cEEEEECCC---CceeEE--------e-cCCCCCeEEEEEeCC--EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEE
Q 008820 363 TIKAWSLLD---GTLSCT--------M-SGHKSAVSTLAVCNG--VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSS 428 (552)
Q Consensus 363 ~i~iwd~~~---~~~~~~--------~-~~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 428 (552)
++++|.+.. |..... + +.|+-.+..+-..++ +|++++.|..|.+||++ |+.+..+.........
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~- 233 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD- 233 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc-
Confidence 899997742 221111 1 235555666555544 99999999999999998 8888888765443333
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeC---C-------cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCC--
Q 008820 429 VLSLTAVQHTLVVSHESGSIKVWRN---D-------KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGD-- 494 (552)
Q Consensus 429 ~~~~s~~~~~l~~g~~dg~i~iwd~---~-------~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~-- 494 (552)
.+.||+|+++++++-.-.|++|.. + ..+..+++|...|..++| +...+++.|.||++++||.+-.
T Consensus 234 -aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~ 312 (420)
T KOG2096|consen 234 -AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE 312 (420)
T ss_pred -eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEe
Confidence 689999999999999999999972 1 245678999999999988 7889999999999999998521
Q ss_pred -----eeeeeeccCCCcccCcceEEEEEeC-CeEEEEeCCCeEEEEEecC
Q 008820 495 -----EFEEDVIPTGAIPCGSVITALLYWQ-GKLFVGCADRTVKIALCNR 538 (552)
Q Consensus 495 -----~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~s~s~Dg~v~iw~~~~ 538 (552)
+..........-....++ .+..+| +.++..+....++++..+.
T Consensus 313 ~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s~gs~l~~~~se~ 361 (420)
T KOG2096|consen 313 AGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVSFGSDLKVFASED 361 (420)
T ss_pred cCCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEeecCCceEEEEccc
Confidence 111111111111112233 677775 4566666666788887663
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.7e-20 Score=170.50 Aligned_cols=204 Identities=15% Similarity=0.218 Sum_probs=171.7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCce
Q 008820 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWR 341 (552)
Q Consensus 262 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 341 (552)
..++++|+..+.|+|||++...+.+.+++|...|+++.+...+. ++++++..|.|.+..+.++.....+....+ .
T Consensus 91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~~~sg----q 165 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFTIDSG----Q 165 (673)
T ss_pred ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCccccceecCCC----C
Confidence 68999999999999999998888888999999999999987655 789999999999999987765554443322 2
Q ss_pred eeeEEEEeeCCC-EEEEeeCCCcEEEEECCCCceeEEe-cCCCCCeEEEEEe---CCEEEEEeCCCcEEEEECCCCceeE
Q 008820 342 YSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTM-SGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLLT 416 (552)
Q Consensus 342 ~~~~~~~~~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~ 416 (552)
......+++..+ +|.+++.+|.|.+||+....++..+ ..|..+...++|+ +.+|++.+.|..|.+||.+..+...
T Consensus 166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred eEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc
Confidence 234567777766 7888999999999999887777655 6799999999999 2389999999999999999888877
Q ss_pred EEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC---cceeeeecccceEEEEEec
Q 008820 417 VLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND---KFMKSMQTHKGSVFAVFLE 473 (552)
Q Consensus 417 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~---~~~~~~~~h~~~v~~v~~~ 473 (552)
.+...++ ... ++|+++|.+|+.|...|.|..||++ .++..+..|...|++++|.
T Consensus 246 ~l~y~~P--lst-vaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq 302 (673)
T KOG4378|consen 246 RLTYSHP--LST-VAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQ 302 (673)
T ss_pred eeeecCC--cce-eeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEee
Confidence 7776543 333 7999999999999999999999976 5788899999999999983
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9e-19 Score=154.93 Aligned_cols=245 Identities=15% Similarity=0.178 Sum_probs=168.1
Q ss_pred eCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcc-ccccccCCCceeeeEEEEee-CCCEEEEeeCCCcEEE
Q 008820 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP-LKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKA 366 (552)
Q Consensus 289 ~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~l~sgs~dg~i~i 366 (552)
.+|.+-|+++.|.+.|. .+++|+.|++|+|||.+....... ...+..+.. ....+...+| -|+.+++++.|+++.|
T Consensus 10 s~h~DlihdVs~D~~GR-RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~-Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGR-RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDG-SIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCCcceeeeeeecccCc-eeeeccCCCcEEEEeccCCCCceEEeeeEEecCC-cEEEEEecCccccceEEEEecCCceee
Confidence 46889999999988665 669999999999999765544333 334444444 2333333334 4889999999999999
Q ss_pred EECCCC---------ceeEEecCCCCCeEEEEEeC---C-EEEEEeCCCcEEEEECCCCceeEEEecC-----------C
Q 008820 367 WSLLDG---------TLSCTMSGHKSAVSTLAVCN---G-VLYSGSRDGTIRLWSLSDHSLLTVLEED-----------S 422 (552)
Q Consensus 367 wd~~~~---------~~~~~~~~h~~~v~~l~~~~---~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------~ 422 (552)
|.-... ....++....+.|+.+.|.+ + .+++++.||.+|||+.-..-.+...... .
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 975211 22345666788999999983 2 8999999999999987654332222111 0
Q ss_pred CCceEEEEEEcCC---CCEEEEEECC-----CcEEEEeCC----c--ceeeeecccceEEEEEe------cCCEEEEEeC
Q 008820 423 SGAVSSVLSLTAV---QHTLVVSHES-----GSIKVWRND----K--FMKSMQTHKGSVFAVFL------EGKWLFTGGW 482 (552)
Q Consensus 423 ~~~~~~~~~~s~~---~~~l~~g~~d-----g~i~iwd~~----~--~~~~~~~h~~~v~~v~~------~~~~l~sgs~ 482 (552)
......++.|++. ..+|++|+.+ +.++||... + .+..+.+|..+|++++| .-..|++++.
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 1112233566654 3578888765 578898633 2 34567789999999987 3458999999
Q ss_pred CCeEEEEecCCCe----------------eeeeeccCCCcccCcceEEEEEe--CCeEEEEeCCCeEEEEEec
Q 008820 483 DKTVSVQELAGDE----------------FEEDVIPTGAIPCGSVITALLYW--QGKLFVGCADRTVKIALCN 537 (552)
Q Consensus 483 dg~i~iwd~~~~~----------------~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~Dg~v~iw~~~ 537 (552)
|| |+||.+.... +.... ....-.|.+.|..+.|+ ...|.+.|.||.||+|+.+
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~-vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEK-VSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEE-eeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 99 9999987421 00000 01112357789999998 3458889999999999865
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-17 Score=161.52 Aligned_cols=249 Identities=13% Similarity=0.134 Sum_probs=172.5
Q ss_pred EEEEeecCccceEEEEEc--CCEE-EEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 008820 244 KFKDLQGHRDCVTGLAVG--GGFL-FSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (552)
Q Consensus 244 ~~~~l~~H~~~V~~l~~s--~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vw 320 (552)
.+..+.+|.. +.+++|+ ++.+ ++++.++.|++||..+++....+..+.. +..++|+|+++.++++++.|+.+++|
T Consensus 23 ~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~ 100 (300)
T TIGR03866 23 VTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVI 100 (300)
T ss_pred eEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEE
Confidence 3455555544 6788998 6665 6777899999999999988887765544 56788999888676777789999999
Q ss_pred eCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCC-cEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEE-
Q 008820 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR-TIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLY- 396 (552)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~- 396 (552)
|+.+......+ ..... ....+++++++.+++++.++ .+..||.++++....+.. .....+++|+ ++ .++
T Consensus 101 d~~~~~~~~~~---~~~~~---~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~ 173 (300)
T TIGR03866 101 DIETRKVLAEI---PVGVE---PEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWV 173 (300)
T ss_pred ECCCCeEEeEe---eCCCC---cceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEE
Confidence 99864322222 11111 12357889999998888765 467789988877665542 2345778888 43 554
Q ss_pred EEeCCCcEEEEECCCCceeEEEecCCC-----CceEEEEEEcCCCCEEEEE-ECCCcEEEEeCCcc--eeeeecccceEE
Q 008820 397 SGSRDGTIRLWSLSDHSLLTVLEEDSS-----GAVSSVLSLTAVQHTLVVS-HESGSIKVWRNDKF--MKSMQTHKGSVF 468 (552)
Q Consensus 397 s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~l~~g-~~dg~i~iwd~~~~--~~~~~~h~~~v~ 468 (552)
++..++.|++||+++++.+..+..+.. ......+.++|++++++++ +.++.+.+||..+. ...+ .+...+.
T Consensus 174 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~ 252 (300)
T TIGR03866 174 SSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL-LVGQRVW 252 (300)
T ss_pred EcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-EeCCCcc
Confidence 455699999999999987776643211 1111225789999986554 45678999997542 2222 2344566
Q ss_pred EEEe--cCCEEEEE-eCCCeEEEEecCCCeeeeeecc
Q 008820 469 AVFL--EGKWLFTG-GWDKTVSVQELAGDEFEEDVIP 502 (552)
Q Consensus 469 ~v~~--~~~~l~sg-s~dg~i~iwd~~~~~~~~~~~~ 502 (552)
++.| +|++|+++ +.+|.|++||+.+++....+..
T Consensus 253 ~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 253 QLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred eEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 6665 88998876 4689999999999877666543
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-18 Score=146.05 Aligned_cols=269 Identities=19% Similarity=0.273 Sum_probs=185.9
Q ss_pred eEEEEEc--CCEEEEEeCCCcEEEEeCCC----------CeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q 008820 255 VTGLAVG--GGFLFSSSFDKSIHVWSLKD----------FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (552)
Q Consensus 255 V~~l~~s--~~~l~s~s~dg~I~iwd~~~----------~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 322 (552)
|.+-+++ +++|+.|..+|+|.+..+++ ...+-..++|.++|+.++|.. .+|++|+ ||.|+-|..
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEeee
Confidence 4444555 88999999999999998753 233455689999999999973 3556665 499999988
Q ss_pred CCCCCCc-cccccccCCC-------ceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--C
Q 008820 323 SFPLGHE-PLKKWNEEKD-------WRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--N 392 (552)
Q Consensus 323 ~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~ 392 (552)
+...... ....+..... ........+.|..+-++.++.|+.++.||+++|+...++++|++.|.++.-. +
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 7543311 1111111111 1112233556666677777799999999999999999999999999999884 6
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEecCCCC------ceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeeeccc
Q 008820 393 GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSG------AVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHK 464 (552)
Q Consensus 393 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~h~ 464 (552)
+.+++|++||++|+||.++++.+..+...... .-.-+.+..-+..++++|+ ...+.+|.++. +...+. -.
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfp-ip 246 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP-IP 246 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEe-cc
Confidence 69999999999999999999998887643211 1111245566677888775 45799999774 333332 34
Q ss_pred ceEEEEEecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEe--CCe-EEEEeCCCeEEEEE
Q 008820 465 GSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW--QGK-LFVGCADRTVKIAL 535 (552)
Q Consensus 465 ~~v~~v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~-l~s~s~Dg~v~iw~ 535 (552)
+++..+.|..+.+++++..+.|.-|.+.+. +.... +.. ...+.+..++ |=. +-.++....+.|+.
T Consensus 247 a~v~~v~F~~d~vl~~G~g~~v~~~~l~Gv-l~a~i-p~~----s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 247 ARVHLVDFVDDCVLIGGEGNHVQSYTLNGV-LQANI-PVE----STACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred cceeEeeeecceEEEeccccceeeeeeccE-EEEec-cCC----ccceeeecccCCceEEEEecccceeeeeee
Confidence 566778898999999999899999998753 22221 111 3345566665 433 44577777887764
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-18 Score=152.56 Aligned_cols=204 Identities=18% Similarity=0.279 Sum_probs=159.1
Q ss_pred eCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCc---------c--ccccccCCCceeeeEEEEeeCCCEEEE
Q 008820 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHE---------P--LKKWNEEKDWRYSGIHALTTSGRYLYT 357 (552)
Q Consensus 289 ~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---------~--~~~~~~~~~~~~~~~~~~~~~~~~l~s 357 (552)
..|.+.|+++..-+..+.++++|+.||.|.+||++...... + -+.....+......+..+..|...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46889999999999999999999999999999998644111 1 111122223344445556667779999
Q ss_pred eeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-----CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEE
Q 008820 358 GSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-----NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSL 432 (552)
Q Consensus 358 gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 432 (552)
++.|.++++||.++.+....|+ ..+.|.+-+++ .-++++|..|-.|++.|+.+|...+++.+|.. .+.. +.|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-~vla-V~W 196 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-GVLA-VEW 196 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC-ceEE-EEe
Confidence 9999999999999998888776 45667776666 23788899999999999999999999998854 4454 578
Q ss_pred cCCCC-EEEEEECCCcEEEEeCCc---cee--------------eeecccceEEEEEe--cCCEEEEEeCCCeEEEEecC
Q 008820 433 TAVQH-TLVVSHESGSIKVWRNDK---FMK--------------SMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 433 s~~~~-~l~~g~~dg~i~iwd~~~---~~~--------------~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~ 492 (552)
+|... .|++|+.||.|++||+++ +.. .-..|.+.+..++| ++.++++.+.|..+++|+..
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME 276 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence 88765 577899999999999763 222 22457788899988 89999999999999999998
Q ss_pred CCe
Q 008820 493 GDE 495 (552)
Q Consensus 493 ~~~ 495 (552)
+++
T Consensus 277 ~G~ 279 (397)
T KOG4283|consen 277 SGR 279 (397)
T ss_pred cCc
Confidence 664
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=155.30 Aligned_cols=282 Identities=15% Similarity=0.228 Sum_probs=193.4
Q ss_pred eecCccceEEEEEc-------CCEEEEEeCCCcEEEEeCCCC---eEEEEEe--CCCCCeEEEEEecC---CCCEEEEEc
Q 008820 248 LQGHRDCVTGLAVG-------GGFLFSSSFDKSIHVWSLKDF---SHVHTFK--GHDHKVMAVVYVDE---DQPLCISGD 312 (552)
Q Consensus 248 l~~H~~~V~~l~~s-------~~~l~s~s~dg~I~iwd~~~~---~~~~~~~--~h~~~v~~v~~~~~---~~~~l~s~~ 312 (552)
.++|..+|..++|+ .+.+++++.+ .+.+|..... +.++++. .|......++|+-+ ++.++++++
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 56889999999998 4667777765 6888887543 3334432 37778888998743 456889999
Q ss_pred CCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEee-CCCEEEEeeCCCcEEEEECCCCceeEEe---cCCCCCeEEE
Q 008820 313 SGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAWSLLDGTLSCTM---SGHKSAVSTL 388 (552)
Q Consensus 313 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l 388 (552)
.-|.|+|.|+.+.+....+..... ....+ .+.| .+++++++|.|.+|++|++++..++..+ .+|.+.|.++
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~----sINei-k~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSv 187 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGG----SINEI-KFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSV 187 (385)
T ss_pred ceeEEEEEecchhhhccceeccCc----cchhh-hcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEE
Confidence 999999999987765555444322 22222 3344 4569999999999999999999999887 5799999999
Q ss_pred EEe--CCEEEEEeCCCcEEEEECCCCceeEEEe------cCCC-Cce----EE-----EEEEc--------CCCCEEEEE
Q 008820 389 AVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLE------EDSS-GAV----SS-----VLSLT--------AVQHTLVVS 442 (552)
Q Consensus 389 ~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~-~~~----~~-----~~~~s--------~~~~~l~~g 442 (552)
.|+ +.++++++.|.+|++|++...+....++ .... .+. .. ....+ --|+++++-
T Consensus 188 D~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSk 267 (385)
T KOG1034|consen 188 DFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSK 267 (385)
T ss_pred EEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeec
Confidence 999 4599999999999999998433211111 0000 000 00 00111 125788888
Q ss_pred ECCCcEEEEeCCccee----------------eeecccceEEEEEe----cCCEEEEEeCCCeEEEEecCCCeeeeeecc
Q 008820 443 HESGSIKVWRNDKFMK----------------SMQTHKGSVFAVFL----EGKWLFTGGWDKTVSVQELAGDEFEEDVIP 502 (552)
Q Consensus 443 ~~dg~i~iwd~~~~~~----------------~~~~h~~~v~~v~~----~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~ 502 (552)
+.++.|..|..++... .+......+.-+.| -++.|+.|...|.|++||++.........
T Consensus 268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~tt- 346 (385)
T KOG1034|consen 268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTT- 346 (385)
T ss_pred ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCce-
Confidence 8899999998653221 12222333333333 57899999999999999998765432111
Q ss_pred CCCcccCcceEEEEEe-CCe-EEEEeCCCeEEEEEe
Q 008820 503 TGAIPCGSVITALLYW-QGK-LFVGCADRTVKIALC 536 (552)
Q Consensus 503 ~~~~~~~~~v~~l~~~-~~~-l~s~s~Dg~v~iw~~ 536 (552)
.........|...+|+ ++. |+..++|++|.-||.
T Consensus 347 l~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 347 LTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred EEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 1122336779999999 444 778899999998885
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.7e-20 Score=187.53 Aligned_cols=264 Identities=17% Similarity=0.243 Sum_probs=199.0
Q ss_pred eCCCcEEEEeCCC--Ce----EEEEEeCCCCCeEEEEEecCCCC---EEEEEcCCCcEEEEeCCC---CCCCcccccccc
Q 008820 269 SFDKSIHVWSLKD--FS----HVHTFKGHDHKVMAVVYVDEDQP---LCISGDSGGGIFVWSFSF---PLGHEPLKKWNE 336 (552)
Q Consensus 269 s~dg~I~iwd~~~--~~----~~~~~~~h~~~v~~v~~~~~~~~---~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~~ 336 (552)
+.+.++-||.+.. .. .+..+. -....+.++|.+.+.. +++.|..||.|.+||... +.....+.....
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~ 114 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK 114 (1049)
T ss_pred ccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc
Confidence 4455666665532 22 223332 3456789999887766 689999999999999876 333334444444
Q ss_pred CCCceeeeEEEEeeC-CCEEEEeeCCCcEEEEECCCCceeEEec--CCCCCeEEEEEe---CCEEEEEeCCCcEEEEECC
Q 008820 337 EKDWRYSGIHALTTS-GRYLYTGSGDRTIKAWSLLDGTLSCTMS--GHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLS 410 (552)
Q Consensus 337 ~~~~~~~~~~~~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~ 410 (552)
|++ .+.. ..|++. ++.+++|+.||.|.|||+++-+...+.. ...+.|.+++|+ ...|++++.+|.+.|||++
T Consensus 115 h~G-~V~g-LDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr 192 (1049)
T KOG0307|consen 115 HTG-PVLG-LDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR 192 (1049)
T ss_pred cCC-ceee-eeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceecccc
Confidence 444 3333 456654 5599999999999999998765544442 245789999999 3489999999999999999
Q ss_pred CCceeEEEecCCCCceEEEEEEcCCCC-EEEEEECC---CcEEEEeCC---cceeeeecccceEEEEEe---cCCEEEEE
Q 008820 411 DHSLLTVLEEDSSGAVSSVLSLTAVQH-TLVVSHES---GSIKVWRND---KFMKSMQTHKGSVFAVFL---EGKWLFTG 480 (552)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~d---g~i~iwd~~---~~~~~~~~h~~~v~~v~~---~~~~l~sg 480 (552)
..+.+..+..+......+.+.|+|+.. .+++++.| -.|.+||++ .+++.+++|...|.+++| |..+|+|+
T Consensus 193 ~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSs 272 (1049)
T KOG0307|consen 193 KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSS 272 (1049)
T ss_pred CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcc
Confidence 998888777665545566689999864 45566554 368999976 478889999999999998 77899999
Q ss_pred eCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC---CeEEEEeCCCeEEEEEecCCc
Q 008820 481 GWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ---GKLFVGCADRTVKIALCNRQI 540 (552)
Q Consensus 481 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~s~s~Dg~v~iw~~~~~~ 540 (552)
+.|+.|.+|+.++++....+... ...+..+.|.+ +.+++++-||.|.|+.+....
T Consensus 273 gkD~~ii~wN~~tgEvl~~~p~~-----~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 273 GKDNRIICWNPNTGEVLGELPAQ-----GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cCCCCeeEecCCCceEeeecCCC-----CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999999998887765553 66799999994 679999999999999987433
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-19 Score=157.26 Aligned_cols=241 Identities=16% Similarity=0.195 Sum_probs=183.8
Q ss_pred cCccceEEEEEc------CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC
Q 008820 250 GHRDCVTGLAVG------GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (552)
Q Consensus 250 ~H~~~V~~l~~s------~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (552)
.|...-..++|+ ..++|.|+.-|.|||.|+.++++...+.+|...|+.+.+.|...++++++|.|.+|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 477888888887 56899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCce------e----------------E-----
Q 008820 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTL------S----------------C----- 376 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~------~----------------~----- 376 (552)
+......+....+|..... ...++.++.+|++++.|.++++|++...+. . .
T Consensus 167 ~~~Cv~VfGG~egHrdeVL--SvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVL--SVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred CCeEEEEecccccccCcEE--EEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 8877666666666655321 135677888999999999999999973210 0 0
Q ss_pred -EecCCCCCeEEEEEeCCEEEEEeCCCcEEEEECC-CCce-------------eEEEecCCCCceEEEEEEcCCCCEEEE
Q 008820 377 -TMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLS-DHSL-------------LTVLEEDSSGAVSSVLSLTAVQHTLVV 441 (552)
Q Consensus 377 -~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~-~~~~-------------~~~~~~~~~~~~~~~~~~s~~~~~l~~ 441 (552)
+-.-|...|-|+.|-++++++=|-++.|..|-.. -.+. +..+.........-..++.+-++.|+.
T Consensus 245 st~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~ 324 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL 324 (385)
T ss_pred cccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence 1134778888888889999999999999999872 1221 222222222222223567788899999
Q ss_pred EECCCcEEEEeCCcce---e-eeec--ccceEEEEEe--cCCEEEEEeCCCeEEEEecC
Q 008820 442 SHESGSIKVWRNDKFM---K-SMQT--HKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 442 g~~dg~i~iwd~~~~~---~-~~~~--h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~ 492 (552)
|...|.|++||++... . ++.. ....|...++ |+..|+....|++|.-||..
T Consensus 325 gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999999976421 1 2221 1235555555 99999999999999999864
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4e-19 Score=166.63 Aligned_cols=247 Identities=21% Similarity=0.296 Sum_probs=189.3
Q ss_pred CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEEC
Q 008820 290 GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSL 369 (552)
Q Consensus 290 ~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~ 369 (552)
.|.+-|.++.++.. ...+++|+. |.|+|||+.......++..+...........+.+.+||+.|++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~-trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNP-TRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCC-cceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 47777888888764 446677765 8999999998777777666665544455556688999999999999999999999
Q ss_pred CCCceeE--EecCCCCCeEEEEEe-C-CEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECC
Q 008820 370 LDGTLSC--TMSGHKSAVSTLAVC-N-GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES 445 (552)
Q Consensus 370 ~~~~~~~--~~~~h~~~v~~l~~~-~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 445 (552)
....+.. .+......+.+++.+ + +..++++.||.|.|||+.+...+..+.++..+. .+ +.++++|..|.+|+-|
T Consensus 495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGa-sc-Idis~dGtklWTGGlD 572 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA-SC-IDISKDGTKLWTGGLD 572 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCc-ee-EEecCCCceeecCCCc
Confidence 7655433 333333456677777 3 488899999999999999999999999986654 33 6999999999999999
Q ss_pred CcEEEEeCCcceeeee-cccceEEEEE--ecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEe--CC
Q 008820 446 GSIKVWRNDKFMKSMQ-THKGSVFAVF--LEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW--QG 520 (552)
Q Consensus 446 g~i~iwd~~~~~~~~~-~h~~~v~~v~--~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~ 520 (552)
++|+.||+++..+..+ .....|.++. +++.+|+.|-.++.+-+-.....+....-. +.+.|.++.|. ..
T Consensus 573 ntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhl------heScVLSlKFa~cGk 646 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHL------HESCVLSLKFAYCGK 646 (705)
T ss_pred cceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecc------cccEEEEEEecccCc
Confidence 9999999886544332 2356777775 599999999999999888776553322211 26779999998 45
Q ss_pred eEEEEeCCCeEEEEEecCCcceeEEEe
Q 008820 521 KLFVGCADRTVKIALCNRQIPEIFSLL 547 (552)
Q Consensus 521 ~l~s~s~Dg~v~iw~~~~~~~~~~~~~ 547 (552)
.+++.+.|+.+..|... -+..+|+..
T Consensus 647 wfvStGkDnlLnawrtP-yGasiFqsk 672 (705)
T KOG0639|consen 647 WFVSTGKDNLLNAWRTP-YGASIFQSK 672 (705)
T ss_pred eeeecCchhhhhhccCc-cccceeecc
Confidence 69999999999999987 455555544
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=156.57 Aligned_cols=267 Identities=13% Similarity=0.174 Sum_probs=181.5
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecC-CCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCce
Q 008820 263 GFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDE-DQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWR 341 (552)
Q Consensus 263 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 341 (552)
..+|++...|+|++||..+++.+..++++...++.+.|... +...+.+|+.||+|++||++.......+.. ..+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~-~~~~--- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISW-TQQS--- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheec-cCCC---
Confidence 56888888999999999999999999999999999999875 677899999999999999997654433332 2211
Q ss_pred eeeEEEEee--CCCEEEEeeC----CCcEEEEECCCCce-eEEe-cCCCCCeEEEEEe---CCEEEEEeCCCcEEEEECC
Q 008820 342 YSGIHALTT--SGRYLYTGSG----DRTIKAWSLLDGTL-SCTM-SGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLS 410 (552)
Q Consensus 342 ~~~~~~~~~--~~~~l~sgs~----dg~i~iwd~~~~~~-~~~~-~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~ 410 (552)
..+..++.. .++.+++|+. |-.|.+||++..+. +..+ ..|...|+++.|+ +++|++||.||-|.+||+.
T Consensus 117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 122334444 4557777753 56799999997665 5444 6799999999999 5599999999999999997
Q ss_pred CCc----eeEEEecCCCCceEEEEEEcCCC-CEEEEEECCCcEEEEeCCcce--eeeec-------------ccceEEEE
Q 008820 411 DHS----LLTVLEEDSSGAVSSVLSLTAVQ-HTLVVSHESGSIKVWRNDKFM--KSMQT-------------HKGSVFAV 470 (552)
Q Consensus 411 ~~~----~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iwd~~~~~--~~~~~-------------h~~~v~~v 470 (552)
... ++.++.. ...+.. +.|..++ +.|.+-+..++..+|++.... ..+.. -..-|.+.
T Consensus 197 ~d~EeDaL~~viN~--~sSI~~-igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~ 273 (376)
T KOG1188|consen 197 KDNEEDALLHVINH--GSSIHL-IGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEH 273 (376)
T ss_pred CCcchhhHHHhhcc--cceeee-eeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecc
Confidence 543 2333332 222344 4565554 568888899999999865321 11111 11233444
Q ss_pred Ee-cCCEEEEEeC-CCeEEEEecC---CCeeeeeeccCCCcccCcceEEEEEe--CCeEEEEeCCCeEEEEEec
Q 008820 471 FL-EGKWLFTGGW-DKTVSVQELA---GDEFEEDVIPTGAIPCGSVITALLYW--QGKLFVGCADRTVKIALCN 537 (552)
Q Consensus 471 ~~-~~~~l~sgs~-dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~Dg~v~iw~~~ 537 (552)
.+ +...++.++. -|...++-+. ++......... ...+...|.++.|. ++.++||+.||.+.+|..+
T Consensus 274 ~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l-~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 274 SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAIL-QGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cCCCcceEEEeccccCceeEEEeeecccccccCccccc-cCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 45 5555555554 5666666544 22222111111 11125567888877 5679999999999999954
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-19 Score=161.27 Aligned_cols=163 Identities=23% Similarity=0.413 Sum_probs=134.3
Q ss_pred EEEEeecCccceEEEEEc---CCEEEEEeCCCcEEEEeCCCCeEE---EEEeCCCCCeEEEEEecCCCCEEEEEcCCCcE
Q 008820 244 KFKDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFSHV---HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGI 317 (552)
Q Consensus 244 ~~~~l~~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~~~~~---~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i 317 (552)
+++++.+|.+.=.+++|| ...|+||..-+.|++|...++.-. ..+.+|+..|..++|+|....+|++||.||+|
T Consensus 203 Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsI 282 (440)
T KOG0302|consen 203 PLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSI 282 (440)
T ss_pred ceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceE
Confidence 345567899888999999 567899988899999999887543 34667999999999999999999999999999
Q ss_pred EEEeCCCCCCCccccccccCCCceeeeEEEEeeCCC--EEEEeeCCCcEEEEECCC---CceeEEecCCCCCeEEEEEe-
Q 008820 318 FVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR--YLYTGSGDRTIKAWSLLD---GTLSCTMSGHKSAVSTLAVC- 391 (552)
Q Consensus 318 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~sgs~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~~- 391 (552)
+|||++.+.....+.. ..+ ...+..++++.+ +|++|+.||+++|||+++ ++++..|+-|..+|+++.|+
T Consensus 283 rIWDiRs~~~~~~~~~-kAh----~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p 357 (440)
T KOG0302|consen 283 RIWDIRSGPKKAAVST-KAH----NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHP 357 (440)
T ss_pred EEEEecCCCccceeEe-ecc----CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecc
Confidence 9999998765555544 222 223445555544 899999999999999974 57889999999999999999
Q ss_pred --CCEEEEEeCCCcEEEEECCC
Q 008820 392 --NGVLYSGSRDGTIRLWSLSD 411 (552)
Q Consensus 392 --~~~l~s~~~dg~i~iwd~~~ 411 (552)
+..|++++.|..|.+||+..
T Consensus 358 ~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 358 HEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ccCceEEeccCCCcEEEEEeec
Confidence 45999999999999999964
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-17 Score=167.80 Aligned_cols=260 Identities=16% Similarity=0.167 Sum_probs=203.9
Q ss_pred ccceeeecCcceEEEeeCCCeEEEEEe----------ecCccceEEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCC
Q 008820 222 IDQARAAGGVKDLVNGLSKGNVKFKDL----------QGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGH 291 (552)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~l----------~~H~~~V~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h 291 (552)
...+.+.+.+..+.+...++.+++|+- .-|...|.+++..+.+|++|+.+++|.+|...++..-..+...
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rf 95 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARF 95 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeee
Confidence 455677788889999999999999872 2277888899888889999999999999999988876666667
Q ss_pred CCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCC
Q 008820 292 DHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLD 371 (552)
Q Consensus 292 ~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~ 371 (552)
+-++.+++|+.++. +++.|+.|-.|++-+.........++.+... .....+.|.+++|++.+.||.|++||+.+
T Consensus 96 tlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap-----Vl~l~~~p~~~fLAvss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 96 TLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP-----VLQLSYDPKGNFLAVSSCDGKVQIWDLQD 169 (933)
T ss_pred eccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCc-----eeeeeEcCCCCEEEEEecCceEEEEEccc
Confidence 78999999988555 7799999999999999877666555544332 12346778888999999999999999999
Q ss_pred CceeEEecCC--------CCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEE
Q 008820 372 GTLSCTMSGH--------KSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVV 441 (552)
Q Consensus 372 ~~~~~~~~~h--------~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 441 (552)
+.+..++.+- ...+..++|+ ++.++..+.|+.|++|+..+......+.........+++.|+|+|.+||+
T Consensus 170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAA 249 (933)
T KOG1274|consen 170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAA 249 (933)
T ss_pred chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEee
Confidence 9877766431 3456778999 45999999999999999999998888877665555677899999999999
Q ss_pred EECCCcEEEEeCCcceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEE
Q 008820 442 SHESGSIKVWRNDKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQ 489 (552)
Q Consensus 442 g~~dg~i~iwd~~~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iw 489 (552)
++.||.|.|||..+... ......|++++| +...+-.-...|...+|
T Consensus 250 s~~~g~I~vWnv~t~~~--~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 250 STLDGQILVWNVDTHER--HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred eccCCcEEEEecccchh--ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 99999999999876222 233457777777 55544444444444443
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-17 Score=145.16 Aligned_cols=283 Identities=15% Similarity=0.159 Sum_probs=192.2
Q ss_pred eEEEEEeecCccceEEEEEc-----CCEEEEEeC----CCcEEEEeCC--CCeEEEEE-eCCCCCeEEEEEecCCC----
Q 008820 242 NVKFKDLQGHRDCVTGLAVG-----GGFLFSSSF----DKSIHVWSLK--DFSHVHTF-KGHDHKVMAVVYVDEDQ---- 305 (552)
Q Consensus 242 ~~~~~~l~~H~~~V~~l~~s-----~~~l~s~s~----dg~I~iwd~~--~~~~~~~~-~~h~~~v~~v~~~~~~~---- 305 (552)
...+..+..+ -++.++.|+ +.+|+.|+. .+.|.|-.+. +++.+..- ..|.-+++.+.|.|+..
T Consensus 35 ~~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~p 113 (364)
T KOG0290|consen 35 RKEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYP 113 (364)
T ss_pred cceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCc
Confidence 3445666555 357778887 567888875 3556665443 34433221 35888999999999763
Q ss_pred CEEEEEcCCCcEEEEeCCCCCCCc-ccccccc-CCCceeeeEEEEeeC---CCEEEEeeCCCcEEEEECCCCc---eeEE
Q 008820 306 PLCISGDSGGGIFVWSFSFPLGHE-PLKKWNE-EKDWRYSGIHALTTS---GRYLYTGSGDRTIKAWSLLDGT---LSCT 377 (552)
Q Consensus 306 ~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~---~~~l~sgs~dg~i~iwd~~~~~---~~~~ 377 (552)
.+|+++ +..+|+|.+....... ....+.. .......++++|.++ .++|.+.|-|.+..+||++++. ....
T Consensus 114 dlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ 191 (364)
T KOG0290|consen 114 DLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ 191 (364)
T ss_pred chhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence 355554 4789999988532222 1112221 122244466777774 6799999999999999999873 3557
Q ss_pred ecCCCCCeEEEEEe-CC--EEEEEeCCCcEEEEECCCCceeEEEecC-CCCceEEEEEEcC-CCCEEEEEE-CCCcEEEE
Q 008820 378 MSGHKSAVSTLAVC-NG--VLYSGSRDGTIRLWSLSDHSLLTVLEED-SSGAVSSVLSLTA-VQHTLVVSH-ESGSIKVW 451 (552)
Q Consensus 378 ~~~h~~~v~~l~~~-~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~s~-~~~~l~~g~-~dg~i~iw 451 (552)
+-+|..+|..++|. ++ .+++.+.||.+|+||+|..+....+... ........+++++ |-+++++-. ....|.|.
T Consensus 192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL 271 (364)
T KOG0290|consen 192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL 271 (364)
T ss_pred EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence 78899999999999 33 9999999999999999987654444322 2122222245554 346666644 44578999
Q ss_pred eCC---cceeeeecccceEEEEEe---cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC---CeE
Q 008820 452 RND---KFMKSMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ---GKL 522 (552)
Q Consensus 452 d~~---~~~~~~~~h~~~v~~v~~---~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l 522 (552)
|++ .++..+++|.+.|+.++| ....|++++.|..+-+||+..-.......+.-.....+.|+.+.|++ +.+
T Consensus 272 DiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwi 351 (364)
T KOG0290|consen 272 DIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWI 351 (364)
T ss_pred EecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEE
Confidence 976 468889999999999998 78899999999999999997542211111111223467799999994 556
Q ss_pred EEEeC
Q 008820 523 FVGCA 527 (552)
Q Consensus 523 ~s~s~ 527 (552)
+.+..
T Consensus 352 ai~~~ 356 (364)
T KOG0290|consen 352 AICFG 356 (364)
T ss_pred EEEec
Confidence 66554
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-17 Score=159.46 Aligned_cols=301 Identities=16% Similarity=0.182 Sum_probs=204.2
Q ss_pred cCcceEEEeeCCCeEEEEEeecCccceEEEEEc--C---CEEEEEeCCCcEEEEeCCCC--eEEEEEeCCCCCeEEEEEe
Q 008820 229 GGVKDLVNGLSKGNVKFKDLQGHRDCVTGLAVG--G---GFLFSSSFDKSIHVWSLKDF--SHVHTFKGHDHKVMAVVYV 301 (552)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~l~~s--~---~~l~s~s~dg~I~iwd~~~~--~~~~~~~~h~~~v~~v~~~ 301 (552)
+.+..++...+...+.+..+.||.++|+|+.+- . .++++|+.|+.|++|.++.. .++.++.+|...+.++.-.
T Consensus 31 Ga~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~ 110 (764)
T KOG1063|consen 31 GAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVAR 110 (764)
T ss_pred cCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEee
Confidence 445556666666677888899999999999997 3 37999999999999999733 4566777777766666432
Q ss_pred cCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCC--EEEEeeCCCcEEEEECCCC--ceeEE
Q 008820 302 DEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR--YLYTGSGDRTIKAWSLLDG--TLSCT 377 (552)
Q Consensus 302 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~sgs~dg~i~iwd~~~~--~~~~~ 377 (552)
+ ....+.+.|+++.+||.+..+ ................-+.++.++.+ .++.|+.+..|.++.-.+. +.+..
T Consensus 111 ~---~~~~~~~ad~~v~vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~e 186 (764)
T KOG1063|consen 111 S---SVMTCKAADGTVSVWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAE 186 (764)
T ss_pred e---eEEEeeccCceEEEeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEE
Confidence 2 222333789999999984332 11111211111112222234444433 5677777888888876533 45678
Q ss_pred ecCCCCCeEEEEEe---C-C-EEEEEeCCCcEEEEECCCCc---------------------eeEEE---------ecCC
Q 008820 378 MSGHKSAVSTLAVC---N-G-VLYSGSRDGTIRLWSLSDHS---------------------LLTVL---------EEDS 422 (552)
Q Consensus 378 ~~~h~~~v~~l~~~---~-~-~l~s~~~dg~i~iwd~~~~~---------------------~~~~~---------~~~~ 422 (552)
+.||.+.|.+++|. . . +|+++|.|..||+|.+.-+. ....+ ...|
T Consensus 187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH 266 (764)
T KOG1063|consen 187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH 266 (764)
T ss_pred eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence 89999999999998 2 3 89999999999999875322 01011 1234
Q ss_pred CCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcc--ee-------eeecccceEEEEEe--cCCEEEEEeCCCeEEEEec
Q 008820 423 SGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF--MK-------SMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQEL 491 (552)
Q Consensus 423 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~--~~-------~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~ 491 (552)
...+.+ +.|+|.+..|++++.|.++.+|...+. +. ...+....-....| +++.+++-+..|..++|..
T Consensus 267 eDWV~s-v~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt 345 (764)
T KOG1063|consen 267 EDWVYS-VWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKT 345 (764)
T ss_pred ccceEE-EEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEec
Confidence 556666 689999999999999999999975432 11 11222333445444 7888999999999999994
Q ss_pred CCC-eeeeeeccCCCcccCcceEEEEEeC--CeEEEEeCCCeEEEEEec
Q 008820 492 AGD-EFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGCADRTVKIALCN 537 (552)
Q Consensus 492 ~~~-~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~Dg~v~iw~~~ 537 (552)
.+. .........+ |...|.+++|+| ..|+++|.|.+-|+|---
T Consensus 346 ~d~~~w~~~~~iSG---H~~~V~dv~W~psGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 346 KDKTFWTQEPVISG---HVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred cCccceeecccccc---ccccceeeeecCCCCEEEEeccccceeeeccc
Confidence 332 2222222222 366799999994 569999999999998654
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=150.41 Aligned_cols=243 Identities=17% Similarity=0.243 Sum_probs=181.1
Q ss_pred EEEeecCccceEEEEEc-CCEEEEEeCCCcEEEEeCCCCeEEEEEe-CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q 008820 245 FKDLQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFK-GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (552)
Q Consensus 245 ~~~l~~H~~~V~~l~~s-~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 322 (552)
.+.|++|.+.|+++.|. +.+|.+|..-|.|++|++.+.+....+. .|...|+.+.-.|++ -+.+-+.|+.+.+|++
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d--~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND--SLDTQGRDPLLILWTI 84 (323)
T ss_pred eeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc--chhhcCCCceEEEEEc
Confidence 56677999999999999 8889999999999999999999888888 577889999888864 4678899999999998
Q ss_pred CCCCC----------------------Ccc--ccccccC----------------------CCceeeeEEEEeeC---CC
Q 008820 323 SFPLG----------------------HEP--LKKWNEE----------------------KDWRYSGIHALTTS---GR 353 (552)
Q Consensus 323 ~~~~~----------------------~~~--~~~~~~~----------------------~~~~~~~~~~~~~~---~~ 353 (552)
..... ... +...... .......+.++..+ +.
T Consensus 85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence 75110 000 0000000 00001122344422 22
Q ss_pred --EEEEeeCCCcEEEEECCCCc----------eeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCC--ce--e
Q 008820 354 --YLYTGSGDRTIKAWSLLDGT----------LSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDH--SL--L 415 (552)
Q Consensus 354 --~l~sgs~dg~i~iwd~~~~~----------~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~--~~--~ 415 (552)
.+++|.++|.+.+||+.++. .......|..+|.++.+. -+.=++|+.+..+..|++... .+ -
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~ 244 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR 244 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence 67889999999999999873 333445789999999997 336678888889999988643 22 1
Q ss_pred EEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEec
Q 008820 416 TVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQEL 491 (552)
Q Consensus 416 ~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~ 491 (552)
......+++. .. +.+-||++.+++++.|+.||+|.-+ +++..++.|.+.|++++| +...++++|.|++|.+|++
T Consensus 245 ~e~~lknpGv-~g-vrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 245 KEITLKNPGV-SG-VRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ceEEecCCCc-cc-eEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 2222233333 23 5889999999999999999998854 688999999999999998 6689999999999999986
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-17 Score=167.49 Aligned_cols=287 Identities=18% Similarity=0.297 Sum_probs=199.6
Q ss_pred CccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCC---CCCeEEEEEec-CCCCEEEEEcCCCcEEEEeCCC
Q 008820 251 HRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGH---DHKVMAVVYVD-EDQPLCISGDSGGGIFVWSFSF 324 (552)
Q Consensus 251 H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h---~~~v~~v~~~~-~~~~~l~s~~~dg~i~vwd~~~ 324 (552)
...+-..+.|+ ...++++...-.|+|||.+.++.+..|..+ ...|+.+.+.. ++..++++|+.||.|+||+--.
T Consensus 1063 n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 33445667777 788888887779999999999998877654 35788888865 4556889999999999997433
Q ss_pred C--CCCccccccccCCCc-----eeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEec-CCCCCeEEEEEe---CC
Q 008820 325 P--LGHEPLKKWNEEKDW-----RYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMS-GHKSAVSTLAVC---NG 393 (552)
Q Consensus 325 ~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~---~~ 393 (552)
. +..+.+..+..-.+. ....+..+.....+|++++.-..|+|||....+.+..+. +...-|+++.-+ ++
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 2 233333333322110 111334444445567776667899999998887777664 344567777766 56
Q ss_pred EEEEEeCCCcEEEEECCCCc---eeEEEecCCCCc-eEEEEEEcCCCC-EEEEEECCCcEEEEeCCc-cee---eeeccc
Q 008820 394 VLYSGSRDGTIRLWSLSDHS---LLTVLEEDSSGA-VSSVLSLTAVQH-TLVVSHESGSIKVWRNDK-FMK---SMQTHK 464 (552)
Q Consensus 394 ~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~-~~~~~~~s~~~~-~l~~g~~dg~i~iwd~~~-~~~---~~~~h~ 464 (552)
.+++|..||.|++||.|... .+...+.|.... +.. +.+.+.|- .|++|+.||.|++||++. ... ....|.
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~-~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVH-LSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCccccee-EEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence 99999999999999998654 345555553321 333 56766554 599999999999999875 222 222232
Q ss_pred --c-eEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCc-ccCcceEEEEEeCCe--EEEEeCCCeEEEEEe
Q 008820 465 --G-SVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAI-PCGSVITALLYWQGK--LFVGCADRTVKIALC 536 (552)
Q Consensus 465 --~-~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~--l~s~s~Dg~v~iw~~ 536 (552)
+ ..+++.. +...+|+|+. +.|+||++.+..+........+. +....+.+++|+|-+ +++|+.|.+|.||..
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeec
Confidence 3 3666654 7889999998 99999999877655443333332 224557999999876 888999999999998
Q ss_pred cCC
Q 008820 537 NRQ 539 (552)
Q Consensus 537 ~~~ 539 (552)
.+.
T Consensus 1381 ~k~ 1383 (1387)
T KOG1517|consen 1381 EKP 1383 (1387)
T ss_pred CCc
Confidence 743
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.6e-19 Score=180.33 Aligned_cols=235 Identities=23% Similarity=0.308 Sum_probs=182.8
Q ss_pred ceEEEEEc--C----CEEEEEeCCCcEEEEeCCCC------eEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEe
Q 008820 254 CVTGLAVG--G----GFLFSSSFDKSIHVWSLKDF------SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (552)
Q Consensus 254 ~V~~l~~s--~----~~l~s~s~dg~I~iwd~~~~------~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 321 (552)
.-+.++|. + ..|+.|..||.|.+||...- ..+.+...|++.|..+.|++..++++++|+.||.|.|||
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD 145 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD 145 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence 45667776 3 35999999999999998652 235667789999999999999999999999999999999
Q ss_pred CCCCCCCccccccccCCCceeeeEEEEeeCCC---EEEEeeCCCcEEEEECCCCceeEEecCCCC--CeEEEEEeC-C--
Q 008820 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR---YLYTGSGDRTIKAWSLLDGTLSCTMSGHKS--AVSTLAVCN-G-- 393 (552)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~~~-~-- 393 (552)
+...+...... .......+.+++++.+ .|++++.+|.+.|||++..+++..+..+.+ .+..++|++ +
T Consensus 146 lnn~~tP~~~~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT 220 (1049)
T KOG0307|consen 146 LNKPETPFTPG-----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT 220 (1049)
T ss_pred cCCcCCCCCCC-----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce
Confidence 98654333222 1113334677888755 899999999999999999888887765554 477899993 3
Q ss_pred EEEEEeCCC---cEEEEECCCCc-eeEEEecCCCCceEEEEEEcCCC-CEEEEEECCCcEEEEeCCc--ceeeeecccce
Q 008820 394 VLYSGSRDG---TIRLWSLSDHS-LLTVLEEDSSGAVSSVLSLTAVQ-HTLVVSHESGSIKVWRNDK--FMKSMQTHKGS 466 (552)
Q Consensus 394 ~l~s~~~dg---~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iwd~~~--~~~~~~~h~~~ 466 (552)
.+++++.|. .|.+||+|... +++.+..|..+.. + +.|++.+ +++++++.|+.|.+|+.++ .+..+....++
T Consensus 221 ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gil-s-lsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW 298 (1049)
T KOG0307|consen 221 QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGIL-S-LSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNW 298 (1049)
T ss_pred eeeeecCCCCCceeEeecccccCCchhhhccccccee-e-eccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcc
Confidence 677777654 59999998754 5677767655544 3 5676655 8999999999999999654 66777777789
Q ss_pred EEEEEe---cCCEEEEEeCCCeEEEEecCCCe
Q 008820 467 VFAVFL---EGKWLFTGGWDKTVSVQELAGDE 495 (552)
Q Consensus 467 v~~v~~---~~~~l~sgs~dg~i~iwd~~~~~ 495 (552)
+..+.| +...+++++.||.|.|+.+.+..
T Consensus 299 ~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 299 CFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999988 66689999999999999997543
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.2e-17 Score=143.51 Aligned_cols=260 Identities=17% Similarity=0.246 Sum_probs=189.8
Q ss_pred ceEEEEEc--CCEEEEEeCCCcEEEEeCCCC------------eEEEEEe-CCCCCeEEEEEec------CCCCEEEEEc
Q 008820 254 CVTGLAVG--GGFLFSSSFDKSIHVWSLKDF------------SHVHTFK-GHDHKVMAVVYVD------EDQPLCISGD 312 (552)
Q Consensus 254 ~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~------------~~~~~~~-~h~~~v~~v~~~~------~~~~~l~s~~ 312 (552)
-...+.|+ |..|++-+.|..+++|++... +...+++ .....|...+|.+ ....++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 34567888 999999999999999987421 0111111 1345677778863 3556889999
Q ss_pred CCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEEC-CCCcee--EEe-----cCCCCC
Q 008820 313 SGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSL-LDGTLS--CTM-----SGHKSA 384 (552)
Q Consensus 313 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~-~~~~~~--~~~-----~~h~~~ 384 (552)
.+.-|++||.-+++.....+.+.........-..+|++||.+|++|.. ..|+++|+ +.|..- ... .+..+-
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 999999999998877666665554433333445689999999998755 78999999 555322 111 234677
Q ss_pred eEEEEEe---CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEEC-CCcEEEEeCCc---ce
Q 008820 385 VSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHE-SGSIKVWRNDK---FM 457 (552)
Q Consensus 385 v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~---~~ 457 (552)
+.|++|+ .+.++.|+...++-|+.-..+.++..+.++ .+.++. +.|.++|+.|++|.. |-.|..||++. ++
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh-~gGvTh-L~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH-GGGVTH-LQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc-CCCeee-EEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 8899999 348999999999999998888888888766 455555 799999999999875 67899999774 55
Q ss_pred eeeecccc----eE-EEEEecCCEEEEEeCCCeEEEEecCC-CeeeeeeccCCCcccCcceEEEEEeCCe
Q 008820 458 KSMQTHKG----SV-FAVFLEGKWLFTGGWDKTVSVQELAG-DEFEEDVIPTGAIPCGSVITALLYWQGK 521 (552)
Q Consensus 458 ~~~~~h~~----~v-~~v~~~~~~l~sgs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 521 (552)
..+..|.. .| ..+.+++++|++|+.||.|++||+.+ +.....+ ......++.++++|-.
T Consensus 288 ~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~-----~~~sd~vNgvslnP~m 352 (406)
T KOG2919|consen 288 YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT-----GNYSDTVNGVSLNPIM 352 (406)
T ss_pred hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc-----ccccccccceecCccc
Confidence 56666655 22 34556899999999999999999987 3322221 1236678899999866
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-17 Score=152.65 Aligned_cols=257 Identities=18% Similarity=0.243 Sum_probs=176.9
Q ss_pred EeCCCCeEEEEEeCCCCCeEEEEEecCCC-CEEEEEcCCCcEEEEeCCCCCCC-ccccccccCCCceeeeEEEEee-CCC
Q 008820 277 WSLKDFSHVHTFKGHDHKVMAVVYVDEDQ-PLCISGDSGGGIFVWSFSFPLGH-EPLKKWNEEKDWRYSGIHALTT-SGR 353 (552)
Q Consensus 277 wd~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~ 353 (552)
.|+.+-......+.+.+.|++++|+|..+ .++++|+.-|.|-+||+.+.... ..+..+..+.. .+..+ .|+| +..
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~-~Vs~l-~F~P~n~s 248 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSG-PVSGL-KFSPANTS 248 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCc-cccce-EecCCChh
Confidence 45555566677778999999999999887 78999999999999999633222 22333333221 23333 4555 445
Q ss_pred EEEEeeCCCcEEEEECCCCce--eEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCce-eEEEecCCCCceEE
Q 008820 354 YLYTGSGDRTIKAWSLLDGTL--SCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSL-LTVLEEDSSGAVSS 428 (552)
Q Consensus 354 ~l~sgs~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~ 428 (552)
.+++.|.||+|++-|++++.. +.........+.++.|+ +..++.+..=|...+||++++.. ...+..|.. .+.+
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k-KI~s 327 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK-KITS 327 (498)
T ss_pred heeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc-ccce
Confidence 999999999999999987643 33333345566777777 44777777777999999998765 444555533 4555
Q ss_pred EEEEcCC-CCEEEEEECCCcEEEEeCCcc------eeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecC----CCe
Q 008820 429 VLSLTAV-QHTLVVSHESGSIKVWRNDKF------MKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELA----GDE 495 (552)
Q Consensus 429 ~~~~s~~-~~~l~~g~~dg~i~iwd~~~~------~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~----~~~ 495 (552)
++++|. ..++++++.|++.+|||+++. .-....|...|.+..| ++..|+|.+.|..|+|||.. ...
T Consensus 328 -v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~ 406 (498)
T KOG4328|consen 328 -VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDE 406 (498)
T ss_pred -eecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCC
Confidence 577775 457899999999999997743 2334568999988876 55569999999999999984 222
Q ss_pred eeeeeccCCCcccCcceEEEEEeCC--eEEEEeCCCeEEEEEec
Q 008820 496 FEEDVIPTGAIPCGSVITALLYWQG--KLFVGCADRTVKIALCN 537 (552)
Q Consensus 496 ~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~Dg~v~iw~~~ 537 (552)
....+.+.......-......|.|+ .+++|-.-..|-|+|-+
T Consensus 407 p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 407 PLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred ccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCC
Confidence 2223333222111112344567764 48888888899999976
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.2e-18 Score=158.00 Aligned_cols=283 Identities=17% Similarity=0.177 Sum_probs=210.4
Q ss_pred EEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEE-eCCCCCeEEEEEecC-CCCEEEEEcCCCcEEEEe
Q 008820 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF-KGHDHKVMAVVYVDE-DQPLCISGDSGGGIFVWS 321 (552)
Q Consensus 246 ~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~-~~~~l~s~~~dg~i~vwd 321 (552)
..|.+|.+.|+.+.|+ |..++|||.|..|.+||+.+++....+ .+|...|..-.|.|. +..-+++++.||.+++=.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 4488999999999999 999999999999999999999887776 469888988889885 345679999999999988
Q ss_pred CCCCCCCccccccccCCCceeeeEEEEeeC-CCEEEEeeCCCcEEEEECCCCceeEEe---cCCCC---CeEEEEEe---
Q 008820 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTS-GRYLYTGSGDRTIKAWSLLDGTLSCTM---SGHKS---AVSTLAVC--- 391 (552)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~---~~h~~---~v~~l~~~--- 391 (552)
+.........+....+.. +.. ..++-|+ ...|.+++.|+.+.-+|++++.+...+ ..+.. ...+++..
T Consensus 216 i~~t~~~e~t~rl~~h~g-~vh-klav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEG-PVH-KLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eccccceecceecccccC-ccc-eeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 765544443333333332 111 2344443 458999999999999999887654433 23333 45667766
Q ss_pred CCEEEEEeCCCcEEEEECCCCce------eEEEecC-----CCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC------
Q 008820 392 NGVLYSGSRDGTIRLWSLSDHSL------LTVLEED-----SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND------ 454 (552)
Q Consensus 392 ~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~-----~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~------ 454 (552)
.+.+++++.|..+++||.+.-.. +..+..+ ....++ ++.++.++.-+.++..|-.|+++...
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~IT-gl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNIT-GLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccce-eEEecCCccceeeeecccceEEeccccccCCC
Confidence 34899999999999999875322 2222222 223344 47899888888888889999999521
Q ss_pred --------cce-eeeecccc--eEEEEEe---cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC
Q 008820 455 --------KFM-KSMQTHKG--SVFAVFL---EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG 520 (552)
Q Consensus 455 --------~~~-~~~~~h~~--~v~~v~~---~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 520 (552)
..+ +.+++|.+ .|-.+.| ...++++||.-|.|.||+-.++++...+... ...|+|+..+|-
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD-----r~VVNCLEpHP~ 447 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD-----RHVVNCLEPHPH 447 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc-----cceEeccCCCCC
Confidence 112 23788876 4556666 5789999999999999999998887766654 347999999985
Q ss_pred e--EEEEeCCCeEEEEEe
Q 008820 521 K--LFVGCADRTVKIALC 536 (552)
Q Consensus 521 ~--l~s~s~Dg~v~iw~~ 536 (552)
. |++.+-|.-|+||..
T Consensus 448 ~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 448 LPVLASSGIDHDVKIWTP 465 (559)
T ss_pred CchhhccCCccceeeecC
Confidence 5 999999999999986
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-17 Score=148.93 Aligned_cols=200 Identities=18% Similarity=0.264 Sum_probs=152.4
Q ss_pred eecCccceEEEEEc---CCEEEEEeCCCcEEEEeCCCC-------eEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcE
Q 008820 248 LQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDF-------SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGI 317 (552)
Q Consensus 248 l~~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~~-------~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i 317 (552)
+.||+++|..++|+ ...+||||.|.+|.||++..+ +++..+.+|...|.-++|+|...++|++++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 67999999999998 889999999999999998653 45778899999999999999999999999999999
Q ss_pred EEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCC--eEEEEEeCCEE
Q 008820 318 FVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSA--VSTLAVCNGVL 395 (552)
Q Consensus 318 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~--v~~l~~~~~~l 395 (552)
.+||+.++.....+. |. ......+|+.+|.++++.+.|..|++||.++++.+..-.+|.+. ...+-..++.+
T Consensus 157 ~iWnv~tgeali~l~----hp--d~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i 230 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD----HP--DMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKI 230 (472)
T ss_pred EEEeccCCceeeecC----CC--CeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCce
Confidence 999999886554433 22 22223477889999999999999999999999999988888763 33333335556
Q ss_pred EEEe----CCCcEEEEECCCCce-eEEEecCCCCceEEEEEEcCCCCEEEEEE-CCCcEEEEeCC
Q 008820 396 YSGS----RDGTIRLWSLSDHSL-LTVLEEDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRND 454 (552)
Q Consensus 396 ~s~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~ 454 (552)
++.+ .+..+-+||..+.+. +..........+. .-.+.++.++++.++ .|+.|+.|...
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl-~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVL-LPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccCCceE-EeeecCCCCEEEEEecCCcceEEEEec
Confidence 5554 477899999876443 2222222222222 236788888776655 69999999744
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=158.77 Aligned_cols=249 Identities=23% Similarity=0.360 Sum_probs=175.5
Q ss_pred EeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCC--------CCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCc
Q 008820 247 DLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK--------DFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGG 316 (552)
Q Consensus 247 ~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~--------~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~ 316 (552)
++..|.+.|+.++|+ ...|++|+.||++++|+++ .-+++.+|.+|.++|.|+++.+++. .+++|+.||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~-~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE-HCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce-EEEeeccCce
Confidence 678999999999998 8999999999999999993 2367899999999999999977554 7899999999
Q ss_pred EEEEeCCCCCCCcc-------ccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCC--CCCeEE
Q 008820 317 IFVWSFSFPLGHEP-------LKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGH--KSAVST 387 (552)
Q Consensus 317 i~vwd~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h--~~~v~~ 387 (552)
|+.|++........ ...+.++.+. ....+++.....|++++.||+++.|+.....+ .++... .+.-.+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtda--vw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDA--VWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccc--eeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 99998763222111 1122222221 11346667777899999999999999876665 344322 223355
Q ss_pred EEEeCC---EEEEEeCCCcEEEEECCCCceeEEEecCCCC-----ceEEEEEEcCCCCEEEEEECCCcEEEEeC--Ccce
Q 008820 388 LAVCNG---VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSG-----AVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFM 457 (552)
Q Consensus 388 l~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~l~~g~~dg~i~iwd~--~~~~ 457 (552)
+.+-.. ..++...-+.--+.++.....+..+...... .....+...|...+.+++..|+.|+++|. +.++
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l 524 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL 524 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence 666533 3333333333334444444444444322111 11222466788889999999999999994 5678
Q ss_pred eeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeee
Q 008820 458 KSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEED 499 (552)
Q Consensus 458 ~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~ 499 (552)
.....|...++++++ +|-+|++++.|+.+++|.+....+...
T Consensus 525 ~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 525 HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred hheeeccceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence 888899999998876 899999999999999999976655443
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=146.44 Aligned_cols=245 Identities=13% Similarity=0.198 Sum_probs=167.8
Q ss_pred EEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcc----ccccccCCCceeeeEEEEeeC-CCEEEEeeCC
Q 008820 287 TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP----LKKWNEEKDWRYSGIHALTTS-GRYLYTGSGD 361 (552)
Q Consensus 287 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~l~sgs~d 361 (552)
.+.||+++|..++|.|.+...+++||.|.+|.||++..+..... +..+.+|. ....+..++|. .+.|++++.|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~--rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ--RRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecc--eeEEEEeecccchhhHhhccCC
Confidence 34689999999999999999999999999999999976543332 33333333 33445566665 4589999999
Q ss_pred CcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEE
Q 008820 362 RTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTL 439 (552)
Q Consensus 362 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 439 (552)
.+|.+||+.+|+.+.++. |...|.++.|+ ++++++.+.|..|||||.++++.+..-..|. +......-|-.++..+
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he-G~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE-GAKPARAIFLASGKIF 231 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc-CCCcceeEEeccCcee
Confidence 999999999999998888 99999999999 4599999999999999999999998885553 4433335666778755
Q ss_pred EEEE---CCCcEEEEeCCc---ce--eeeecccceEEEE-EecCCEEE-EEeCCCeEEEEecCCCeeeeeeccCCCcccC
Q 008820 440 VVSH---ESGSIKVWRNDK---FM--KSMQTHKGSVFAV-FLEGKWLF-TGGWDKTVSVQELAGDEFEEDVIPTGAIPCG 509 (552)
Q Consensus 440 ~~g~---~dg~i~iwd~~~---~~--~~~~~h~~~v~~v-~~~~~~l~-sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 509 (552)
.+|- ++..+-+||... ++ ..+....+-..-+ ..|.+.++ +|-.|+.|+.|.+............ ....
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~--f~S~ 309 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNT--FSSK 309 (472)
T ss_pred eeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecc--cccC
Confidence 5553 478899998543 32 2333333322222 12555555 5557999999999876522222111 1123
Q ss_pred cceEEEEEeCCeEEEEeCCCeEEEEEec
Q 008820 510 SVITALLYWQGKLFVGCADRTVKIALCN 537 (552)
Q Consensus 510 ~~v~~l~~~~~~l~s~s~Dg~v~iw~~~ 537 (552)
.+-..+.+-|.+-+-.+..-..|+|.+.
T Consensus 310 epQRG~g~mPKRGl~Vs~cEI~rfyKl~ 337 (472)
T KOG0303|consen 310 EPQRGMGFMPKRGLDVSKCEIARFYKLH 337 (472)
T ss_pred CccccccccccccccchHHHHHHHHHhh
Confidence 3445555656554444443344444443
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.2e-16 Score=140.98 Aligned_cols=279 Identities=20% Similarity=0.196 Sum_probs=190.4
Q ss_pred ccceEEEEEc---CCEEEEEeCCCcEEEEeCCCC---------eEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEE
Q 008820 252 RDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDF---------SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFV 319 (552)
Q Consensus 252 ~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~~---------~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~v 319 (552)
..+|.++.|. .+.++||+.|..|++|.++.. +....+..|...|+++.|+|+++ ++++|+.+|.|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceEEE
Confidence 4678999998 448999999999999987532 23456778999999999999776 8899999999999
Q ss_pred EeCCCCCCC------------cc-ccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeE
Q 008820 320 WSFSFPLGH------------EP-LKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVS 386 (552)
Q Consensus 320 wd~~~~~~~------------~~-~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~ 386 (552)
|........ .. .+....+.... --.+++++++++++++.|..+++||+..|+....+..|...+.
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~di--ydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDI--YDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccch--hhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence 976621110 00 00111111100 0136788999999999999999999999999999999999999
Q ss_pred EEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEe---------cCCCCce------------EEEEEEcCCCCEEEEEE
Q 008820 387 TLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLE---------EDSSGAV------------SSVLSLTAVQHTLVVSH 443 (552)
Q Consensus 387 ~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~~------------~~~~~~s~~~~~l~~g~ 443 (552)
.++|. +.++++-+.|...+.+++...+.++... .+..+.. ...++|+|+|.++++..
T Consensus 170 gvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 170 GVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred eeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 99999 5689998988888777776544332222 0101111 11257899999998754
Q ss_pred C----CC-----cEEEEe---CCcceeeeecccceEEEEEe--------------------cCCEEEEEeCCCeEEEEec
Q 008820 444 E----SG-----SIKVWR---NDKFMKSMQTHKGSVFAVFL--------------------EGKWLFTGGWDKTVSVQEL 491 (552)
Q Consensus 444 ~----dg-----~i~iwd---~~~~~~~~~~h~~~v~~v~~--------------------~~~~l~sgs~dg~i~iwd~ 491 (552)
. .+ ..++|+ +..+...+.+...+...+.+ -+..++.++ .+.|++||.
T Consensus 250 g~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydt 328 (434)
T KOG1009|consen 250 GLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDT 328 (434)
T ss_pred ceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEecc
Confidence 2 22 335554 34444444444433332221 122445555 568999999
Q ss_pred CCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEEeCCCeEEEEEecC
Q 008820 492 AGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCADRTVKIALCNR 538 (552)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~Dg~v~iw~~~~ 538 (552)
++-......... +-..++.++|+++ .|+..|.||...+-.+++
T Consensus 329 q~~~P~~~v~ni----hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 329 QTLEPLAVVDNI----HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred ccccceEEEeee----eeeeecceeecCCCcEEEEeccCCceEEEEEcc
Confidence 875444433322 2567999999965 599999999988877763
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-14 Score=145.60 Aligned_cols=284 Identities=27% Similarity=0.472 Sum_probs=210.7
Q ss_pred EeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCe-EEEEEeCCCC-CeEEEEE-ecCCCCEEEEEc-CCCcEEEE
Q 008820 247 DLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS-HVHTFKGHDH-KVMAVVY-VDEDQPLCISGD-SGGGIFVW 320 (552)
Q Consensus 247 ~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~-~~~~~~~h~~-~v~~v~~-~~~~~~~l~s~~-~dg~i~vw 320 (552)
.+.+|...|.++.+. +..++.++.|+.+.+|+...+. ....+..+.. .+..+.+ .+++...++..+ .|+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 466899999999999 8888889999999999998886 6777776443 7777777 666653445544 49999999
Q ss_pred eCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeC-CCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC--EEE
Q 008820 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG-DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG--VLY 396 (552)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~--~l~ 396 (552)
+.... .........+.. .....++++++..+++++. |+.+++|+...+..+..+.+|...|.+++|+ ++ .++
T Consensus 140 ~~~~~--~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 140 DLSTP--GKLIRTLEGHSE--SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred EecCC--CeEEEEEecCcc--cEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEE
Confidence 99851 111222222221 1124588888888888885 9999999999989999999999999999999 33 455
Q ss_pred EEeCCCcEEEEECCCCceeE-EEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcc---eeeeecccceEEEEEe
Q 008820 397 SGSRDGTIRLWSLSDHSLLT-VLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF---MKSMQTHKGSVFAVFL 472 (552)
Q Consensus 397 s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~h~~~v~~v~~ 472 (552)
+++.|+.|++||...+.... .+..+.... . ..|++++..+++++.|+.+++|+.... ...+..|...+.++.+
T Consensus 216 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 292 (466)
T COG2319 216 SGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-V--SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292 (466)
T ss_pred EecCCCcEEEEECCCCcEEeeecCCCCcce-e--EeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEE
Confidence 55999999999999777777 455553322 2 379999988999999999999996532 3344578888988877
Q ss_pred --cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEE-eCCCeEEEEEecCCc
Q 008820 473 --EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVG-CADRTVKIALCNRQI 540 (552)
Q Consensus 473 --~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~-s~Dg~v~iw~~~~~~ 540 (552)
++..+++++.|+.+++||..+........ ...+...+..+.+.+ ..++.+ ..|+.+++|+.....
T Consensus 293 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 293 SPDGKLLASGSSDGTVRLWDLETGKLLSSLT---LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CCCCCEEEEeeCCCcEEEEEcCCCceEEEee---ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 56888889999999999988776554443 111233577777732 345555 688999999998544
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-16 Score=136.84 Aligned_cols=266 Identities=18% Similarity=0.242 Sum_probs=188.2
Q ss_pred CCcEEEEeCCCCeE---EEEEeCCCCCeEEEEEecCCCCEEEEEcCC-------CcEEEEeCCCCCCCccc------ccc
Q 008820 271 DKSIHVWSLKDFSH---VHTFKGHDHKVMAVVYVDEDQPLCISGDSG-------GGIFVWSFSFPLGHEPL------KKW 334 (552)
Q Consensus 271 dg~I~iwd~~~~~~---~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d-------g~i~vwd~~~~~~~~~~------~~~ 334 (552)
|+.|.+-+++.+.. .+.|..|.+.|..++-+|.+..+|+++..+ ..+-||.+..+...... ..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 56677776654332 345677889999999999999999988653 24679998765433211 111
Q ss_pred ccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCce-eEEec-----CCCCCeEEEEEe---CCEEEEEeCCCcEE
Q 008820 335 NEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTL-SCTMS-----GHKSAVSTLAVC---NGVLYSGSRDGTIR 405 (552)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~-~~~~~-----~h~~~v~~l~~~---~~~l~s~~~dg~i~ 405 (552)
....- ....+.-+.|++..+++-. |..|.+|++..+.. +..+. .+....++-+|+ ++.-+....|+++.
T Consensus 119 dteav-g~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~ 196 (370)
T KOG1007|consen 119 DTEAV-GKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQ 196 (370)
T ss_pred CHHHh-CceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEE
Confidence 11111 1224556778888888765 78899999987765 33332 345567778887 44555566789999
Q ss_pred EEECCCCceeEEEecCCCCceEEEEEEcCCCC-EEEEEECCCcEEEEeCCc---ceeeeecccceEEEEEe---cCCEEE
Q 008820 406 LWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQH-TLVVSHESGSIKVWRNDK---FMKSMQTHKGSVFAVFL---EGKWLF 478 (552)
Q Consensus 406 iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iwd~~~---~~~~~~~h~~~v~~v~~---~~~~l~ 478 (552)
.||+|+.+....+...|...+.. +.|+|+.. +|++|+.||.|+|||.++ +++.+.+|..+|.++.| ..++++
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrd-lDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiL 275 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRD-LDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLIL 275 (370)
T ss_pred EEEccchhhhcchhhhhcceeee-ccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEE
Confidence 99999999888888776555555 68888754 678899999999999764 78889999999999998 578999
Q ss_pred EEeCCCeEEEEecCCCee--------------------eeeeccC----CCcccCcceEEEEEeC---CeEEEEeCCCeE
Q 008820 479 TGGWDKTVSVQELAGDEF--------------------EEDVIPT----GAIPCGSVITALLYWQ---GKLFVGCADRTV 531 (552)
Q Consensus 479 sgs~dg~i~iwd~~~~~~--------------------~~~~~~~----~~~~~~~~v~~l~~~~---~~l~s~s~Dg~v 531 (552)
+||.|..|.+|....-.- ....... ..-.+...|.+++|+. =.+++-+.||.+
T Consensus 276 s~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRv 355 (370)
T KOG1007|consen 276 SGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRV 355 (370)
T ss_pred ecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceE
Confidence 999999999996532110 0000000 1123577899999993 348899999999
Q ss_pred EEEEecCC
Q 008820 532 KIALCNRQ 539 (552)
Q Consensus 532 ~iw~~~~~ 539 (552)
.|=++++.
T Consensus 356 iIs~V~r~ 363 (370)
T KOG1007|consen 356 IISSVPRF 363 (370)
T ss_pred EeecCChh
Confidence 99887643
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-16 Score=143.71 Aligned_cols=291 Identities=10% Similarity=0.054 Sum_probs=196.6
Q ss_pred EEEEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCC------CCeEEEEEeC-CCCCeEEEEEecCCCCEEEEEcC
Q 008820 243 VKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK------DFSHVHTFKG-HDHKVMAVVYVDEDQPLCISGDS 313 (552)
Q Consensus 243 ~~~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~------~~~~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~ 313 (552)
.+..++.+|.+.|+++.|+ +++|++|+.|..+++|+++ +.+++..... |...|.|++|.. ++..+++|..
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~ 125 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGER 125 (609)
T ss_pred hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCC
Confidence 3445688999999999999 9999999999999999985 3456665543 568999999976 6668899999
Q ss_pred CCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCc-eeE--EecCCCCCeEEEEE
Q 008820 314 GGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT-LSC--TMSGHKSAVSTLAV 390 (552)
Q Consensus 314 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~~--~~~~h~~~v~~l~~ 390 (552)
+++|..-|+++.+....... .......--...+|..+.+++.+.+|.|.+||.+..+ ++. ..........++.|
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~---~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANE---NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF 202 (609)
T ss_pred cceeEeeecccceeeeeecc---cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence 99999999997644332221 1111111123456667899999999999999998654 222 22334556778888
Q ss_pred e---CCEEEEEeCCCcEEEEECCCCc-eeEEEecC----CCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc-ceeeee
Q 008820 391 C---NGVLYSGSRDGTIRLWSLSDHS-LLTVLEED----SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK-FMKSMQ 461 (552)
Q Consensus 391 ~---~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~----~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~-~~~~~~ 461 (552)
+ +.+|++.+..+-+-+||.+... .+...... ..........|+|+|+.+.+--....-.+||.-. ....++
T Consensus 203 ~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k 282 (609)
T KOG4227|consen 203 HPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLK 282 (609)
T ss_pred cCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEe
Confidence 8 4499999999999999998654 22222111 1111122257899999988876666666777432 222232
Q ss_pred c-cc-------ceEEEEEe-cCCEEEEEeCCCeEEEEecCCCeeeeeeccCC------------------CcccCcceEE
Q 008820 462 T-HK-------GSVFAVFL-EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTG------------------AIPCGSVITA 514 (552)
Q Consensus 462 ~-h~-------~~v~~v~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~------------------~~~~~~~v~~ 514 (552)
. |. ..+.++.| +...+++|+.+-.|++|.+....-..-+...+ -..+.+.++.
T Consensus 283 ~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ 362 (609)
T KOG4227|consen 283 SDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ 362 (609)
T ss_pred ccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence 2 21 23445666 66779999999999999875221110000000 0124667888
Q ss_pred EEEeC--CeEEEEeCCCeEEEEEec
Q 008820 515 LLYWQ--GKLFVGCADRTVKIALCN 537 (552)
Q Consensus 515 l~~~~--~~l~s~s~Dg~v~iw~~~ 537 (552)
+.|++ ..|++.+....++||.-.
T Consensus 363 VRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 363 VRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eeecCCcceEeccchhhheeccccc
Confidence 99985 458888899999999754
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-16 Score=137.06 Aligned_cols=242 Identities=17% Similarity=0.228 Sum_probs=170.5
Q ss_pred EEeecCccceEEEEEc---CCEEEEEeCC-------CcEEEEeCCCC---------eEEEEEe-CCCCCeEEEEEecCCC
Q 008820 246 KDLQGHRDCVTGLAVG---GGFLFSSSFD-------KSIHVWSLKDF---------SHVHTFK-GHDHKVMAVVYVDEDQ 305 (552)
Q Consensus 246 ~~l~~H~~~V~~l~~s---~~~l~s~s~d-------g~I~iwd~~~~---------~~~~~~~-~h~~~v~~v~~~~~~~ 305 (552)
..|..|.+.|+.++-+ .+.|+|+..| ..+-||.+... +++..+. .+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 3467788899999887 6667776553 23679988642 2333343 3556899999999766
Q ss_pred CEEEEEcCCCcEEEEeCCCCCCC-ccccccccCCCceeeeEEEEee--CCCEEEEeeCCCcEEEEECCCCceeEEe-cCC
Q 008820 306 PLCISGDSGGGIFVWSFSFPLGH-EPLKKWNEEKDWRYSGIHALTT--SGRYLYTGSGDRTIKAWSLLDGTLSCTM-SGH 381 (552)
Q Consensus 306 ~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~-~~h 381 (552)
.+ ++-. |..|.+|+++..... ..+.........+....-.++| +++.+++. .|+++..||+++.+....+ .+|
T Consensus 137 kl-asm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAH 213 (370)
T KOG1007|consen 137 KL-ASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAH 213 (370)
T ss_pred ee-EEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhh
Confidence 54 4333 899999999876652 2221111111111222234555 56667665 5699999999998877766 568
Q ss_pred CCCeEEEEEeCC---EEEEEeCCCcEEEEECCCCc-eeEEEecCCCCceEEEEEEcCC-CCEEEEEECCCcEEEEeCC--
Q 008820 382 KSAVSTLAVCNG---VLYSGSRDGTIRLWSLSDHS-LLTVLEEDSSGAVSSVLSLTAV-QHTLVVSHESGSIKVWRND-- 454 (552)
Q Consensus 382 ~~~v~~l~~~~~---~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iwd~~-- 454 (552)
...|..+.|+++ +|++|+.||.|++||.|..+ ++..+..| ...+.++ .|+|. ..++++|+.|..|.+|...
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~H-sHWvW~V-Rfn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGH-SHWVWAV-RFNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCC-ceEEEEE-EecCccceEEEecCCCceeEEEecccc
Confidence 889999999954 89999999999999998765 45555554 4556664 66654 5688899999999999521
Q ss_pred -----------------------------cceeeeecccceEEEEEe---cCCEEEEEeCCCeEEEEecC
Q 008820 455 -----------------------------KFMKSMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 455 -----------------------------~~~~~~~~h~~~v~~v~~---~~~~l~sgs~dg~i~iwd~~ 492 (552)
..+.++..|...|++++| |.-.+++-|.||.+.|=.+.
T Consensus 292 SSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 292 SSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 123466779999999999 66688999999999887664
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-15 Score=155.05 Aligned_cols=254 Identities=17% Similarity=0.222 Sum_probs=174.3
Q ss_pred eCCCeEEEEEeecCccceEEEEEc---CCEEEEEeCCCcEEEEeCCC-------CeEEEEEeCCCCCeEEEEEecCCCCE
Q 008820 238 LSKGNVKFKDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKD-------FSHVHTFKGHDHKVMAVVYVDEDQPL 307 (552)
Q Consensus 238 ~~~~~~~~~~l~~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~-------~~~~~~~~~h~~~v~~v~~~~~~~~~ 307 (552)
+...++.+..+..|+..|..++.+ +.+++|||.||+||+||... .+...++....+.+.++...+.+. .
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~-~ 1112 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD-Q 1112 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC-e
Confidence 344567788899999999999998 58999999999999999853 233444544567888888877655 5
Q ss_pred EEEEcCCCcEEEEeCCCCCCCc----cccccccCCCceeeeEEEEeeC-CC-EEEEeeCCCcEEEEECCCCceeEEec--
Q 008820 308 CISGDSGGGIFVWSFSFPLGHE----PLKKWNEEKDWRYSGIHALTTS-GR-YLYTGSGDRTIKAWSLLDGTLSCTMS-- 379 (552)
Q Consensus 308 l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~-~l~sgs~dg~i~iwd~~~~~~~~~~~-- 379 (552)
+|.++.||.|++.+++...... ..+..+.+.......+.++... .. .++.+..-+.|..||+++....++++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 6778999999999998632111 1122222333333334444333 33 78888888999999998877666553
Q ss_pred CCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEc---CCCCEEEEE-E-CCCcEEEEe
Q 008820 380 GHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLT---AVQHTLVVS-H-ESGSIKVWR 452 (552)
Q Consensus 380 ~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~l~~g-~-~dg~i~iwd 452 (552)
...+.|++++.+ .+.+++|...|.+.+||+|-+.++..+..+....+..+ +.. +.....+++ + ..+.|.+|+
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v-~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHV-WLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceE-EeeccCCCCceEEEecccCCCceeeee
Confidence 345789999999 45999999999999999999999888877665555443 333 333444444 3 578899998
Q ss_pred CCcc--eeeeecc-------------------cc-eEEE-EEecCCEEEEEeCCCeEEEEecCC
Q 008820 453 NDKF--MKSMQTH-------------------KG-SVFA-VFLEGKWLFTGGWDKTVSVQELAG 493 (552)
Q Consensus 453 ~~~~--~~~~~~h-------------------~~-~v~~-v~~~~~~l~sgs~dg~i~iwd~~~ 493 (552)
..+. ...+-.. .- .+.+ +.--+..+.+|+.|..|+.||...
T Consensus 1272 ~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred cccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 5432 1121111 00 1111 112566889999999999999754
|
|
| >KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-18 Score=150.73 Aligned_cols=113 Identities=21% Similarity=0.373 Sum_probs=83.2
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p 88 (552)
-++|.| ||++.+..+.. |.++++|||-|||||.+. ...++.|||||||||+||||..=+ |
T Consensus 165 gvvKLGDfGL~r~l~s~~t--fA~S~VGTPyYMSPE~i~---------------~~~Y~~kSDiWslGCllyEMcaL~~P 227 (375)
T KOG0591|consen 165 GVVKLGDFGLGRFLSSKTT--FAHSLVGTPYYMSPERIH---------------ESGYNFKSDIWSLGCLLYEMCALQSP 227 (375)
T ss_pred CceeeccchhHhHhcchhH--HHHhhcCCCcccCHHHHh---------------cCCCCcchhHHHHHHHHHHHHhcCCC
Confidence 367888 89988887754 799999999999999992 356779999999999999999999 9
Q ss_pred chHHHhhhhh-hc-cccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHH
Q 008820 89 FTKELIDYIR-CV-STKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (552)
Q Consensus 89 f~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l 162 (552)
|.+.+..+|- .+ +++ . +..|. .+.+..+.+++..|+..+|+.||........+
T Consensus 228 F~g~n~~~L~~KI~qgd-~-----------------~~~p~---~~YS~~l~~li~~ci~vd~~~RP~t~~~v~di 282 (375)
T KOG0591|consen 228 FYGDNLLSLCKKIEQGD-Y-----------------PPLPD---EHYSTDLRELINMCIAVDPEQRPDTVPYVQDI 282 (375)
T ss_pred cccccHHHHHHHHHcCC-C-----------------CCCcH---HHhhhHHHHHHHHHccCCcccCCCcchHHHHH
Confidence 9998666441 00 010 0 00110 12334588999999999999999865444433
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-13 Score=137.68 Aligned_cols=285 Identities=29% Similarity=0.455 Sum_probs=205.4
Q ss_pred eEEEEEeecCccceEEEEEc--CCEEEEEeC-CCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEE
Q 008820 242 NVKFKDLQGHRDCVTGLAVG--GGFLFSSSF-DKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIF 318 (552)
Q Consensus 242 ~~~~~~l~~H~~~V~~l~~s--~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~ 318 (552)
......+.+|...|.+++|+ +..+++++. |+.+++|+..++..+..+.+|...|.+++|+|++..++++++.|+.|+
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 34556678899999999999 668888885 999999999998999999999999999999987765666669999999
Q ss_pred EEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCce-eEEecCCCCCeEEEEEeC--CEE
Q 008820 319 VWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTL-SCTMSGHKSAVSTLAVCN--GVL 395 (552)
Q Consensus 319 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~--~~l 395 (552)
+||...+..... ....+.... +..+++++..+++++.|+.+++||...... ...+.+|...+.++.|.+ ..+
T Consensus 225 ~wd~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 225 LWDLSTGKLLRS--TLSGHSDSV---VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred EEECCCCcEEee--ecCCCCcce---eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEE
Confidence 998773322221 222222211 227888888888999999999999986664 445567899999999984 477
Q ss_pred EEEeCCCcEEEEECCCCceeEEEe-cCCCCceEEEEEEcCCCCEEEEE-ECCCcEEEEeCCccee--eeecccceEEEEE
Q 008820 396 YSGSRDGTIRLWSLSDHSLLTVLE-EDSSGAVSSVLSLTAVQHTLVVS-HESGSIKVWRNDKFMK--SMQTHKGSVFAVF 471 (552)
Q Consensus 396 ~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g-~~dg~i~iwd~~~~~~--~~~~h~~~v~~v~ 471 (552)
++++.|+.+++||..+........ ..+...+.. +.+.+++..++.+ ..|+.+.+|+...... ...... .+..+.
T Consensus 300 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 377 (466)
T COG2319 300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSS-LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVS 377 (466)
T ss_pred EEeeCCCcEEEEEcCCCceEEEeeecccCCceEE-EEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEE
Confidence 779999999999998887766665 222333444 4554443556555 6789999999665432 222222 155555
Q ss_pred e-cCCEEEE-EeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEEeCCCeEEEEEecC
Q 008820 472 L-EGKWLFT-GGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGCADRTVKIALCNR 538 (552)
Q Consensus 472 ~-~~~~l~s-gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~Dg~v~iw~~~~ 538 (552)
+ ....+.. +..++.+.+|+.............. ..+....+.+ ..+++++.++.+++|+...
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 378 FSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT-----SRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ECCCCCEEEEecCCCceEEEecccCeeeeeccCCC-----CcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 4 2233343 6889999999999876655444321 4567777764 3477789999999999875
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.9e-14 Score=127.04 Aligned_cols=282 Identities=14% Similarity=0.145 Sum_probs=189.1
Q ss_pred ceEEEEEcCCEEEEEeCCCc--EEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccc
Q 008820 254 CVTGLAVGGGFLFSSSFDKS--IHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPL 331 (552)
Q Consensus 254 ~V~~l~~s~~~l~s~s~dg~--I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 331 (552)
.|-..-|+..++|..+.+.. +++.+++.+..+..+. ...+|.+|.++. ..|+++-.+ .|+|||+.+.+....+
T Consensus 48 ~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI 122 (391)
T KOG2110|consen 48 SIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTI 122 (391)
T ss_pred EEEEeecccceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhh
Confidence 45566677888887776654 9999998888887765 557899999854 244444443 4999999987776666
Q ss_pred cccccCCCceeeeEEEEeeCCC--EEEEe--eCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeCCCc-E
Q 008820 332 KKWNEEKDWRYSGIHALTTSGR--YLYTG--SGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGT-I 404 (552)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~--~l~sg--s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg~-i 404 (552)
.....+ ...+.+++++.. +++.- ...|.|.+||..+-+++..+..|.+++-+++|+ ++ +||++|..|+ |
T Consensus 123 ~t~~~n----~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVI 198 (391)
T KOG2110|consen 123 ETTPPN----PKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVI 198 (391)
T ss_pred hccCCC----ccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEE
Confidence 665332 234667777654 66653 346899999999999999999999999999999 44 9999999997 7
Q ss_pred EEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcceeeeecccceEEEEEecCCEEEEEeC--
Q 008820 405 RLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLFTGGW-- 482 (552)
Q Consensus 405 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~h~~~v~~v~~~~~~l~sgs~-- 482 (552)
|++.+.+|+.+..|+..........++|++++.+|++.+..++|++|.+.+... .....+-..-.+-+...-....
T Consensus 199 RVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~--~~~~~p~~~~~~~~~~sk~~~syl 276 (391)
T KOG2110|consen 199 RVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSN--NPPESPTAGTSWFGKVSKAATSYL 276 (391)
T ss_pred EEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccccc--CCCCCCCCCCcccchhhhhhhhhc
Confidence 899999999999998765544455589999999999999999999998765431 1111111111111111110000
Q ss_pred -CCeEEEEecCCCeeeeeeccCCCcccCcceEEEEE--eCCeEEEEeCCCeEEEEEecCC-cceeEEEeccc
Q 008820 483 -DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY--WQGKLFVGCADRTVKIALCNRQ-IPEIFSLLLHI 550 (552)
Q Consensus 483 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~l~s~s~Dg~v~iw~~~~~-~~~~~~~~gh~ 550 (552)
.+.-.+||....--....... . ...+..+.- .+.++.+++.||.++.|.++.+ +.++.-+.-|.
T Consensus 277 ps~V~~~~~~~R~FAt~~l~~s-~---~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h~ 344 (391)
T KOG2110|consen 277 PSQVSSVLDQSRKFATAKLPES-G---RKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRHF 344 (391)
T ss_pred chhhhhhhhhccceeEEEccCC-C---ccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEeec
Confidence 112223555432111111111 0 112333332 2467999999999999999864 55666555554
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.8e-15 Score=131.42 Aligned_cols=258 Identities=17% Similarity=0.190 Sum_probs=185.5
Q ss_pred cceeeecCcceEEEeeCCCeEEEEEeec----------------------CccceEEEEEc---------CCEEEEEeCC
Q 008820 223 DQARAAGGVKDLVNGLSKGNVKFKDLQG----------------------HRDCVTGLAVG---------GGFLFSSSFD 271 (552)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------------------H~~~V~~l~~s---------~~~l~s~s~d 271 (552)
.....++++.-+++...+....+|.+.. ..+.|...+|- ..++++.+.|
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 3455667777777777777777777521 12344455542 5789999999
Q ss_pred CcEEEEeCCCCeEEEEEeC--CCC---CeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcccc-ccccCCC--ceee
Q 008820 272 KSIHVWSLKDFSHVHTFKG--HDH---KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLK-KWNEEKD--WRYS 343 (552)
Q Consensus 272 g~I~iwd~~~~~~~~~~~~--h~~---~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~--~~~~ 343 (552)
.-|++||.-+|+...++.+ |.+ ...+++|+|++..+ .++....|+++|+..+....... +....+. ....
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeql--faGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQL--FAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeE--eecccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 9999999999999888765 433 45689999998855 35678999999995443332222 2211111 1233
Q ss_pred eEEEEeeCC-CEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeC-CCcEEEEECCCC-ceeEEE
Q 008820 344 GIHALTTSG-RYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSR-DGTIRLWSLSDH-SLLTVL 418 (552)
Q Consensus 344 ~~~~~~~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~-dg~i~iwd~~~~-~~~~~~ 418 (552)
+..+++|.. +.++.|+...++-||.-..+.++..+.+|.+.|+.+.|. ++.|++|+. |..|..||+|.. .++..+
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L 290 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYAL 290 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhh
Confidence 455667754 489999999999999988999999999999999999999 458888774 789999999874 456666
Q ss_pred ecCCC-CceEEEEEEcCCCCEEEEEECCCcEEEEeCCc---ceeeeecccceEEEEEecC--CEEEEEeC
Q 008820 419 EEDSS-GAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK---FMKSMQTHKGSVFAVFLEG--KWLFTGGW 482 (552)
Q Consensus 419 ~~~~~-~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~---~~~~~~~h~~~v~~v~~~~--~~l~sgs~ 482 (552)
..+.. ..........|++++|++|+.||.|++||+.+ ....+..|+..++.++++. ..+++++.
T Consensus 291 ~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 291 ERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred hhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 55533 22222256789999999999999999999765 4667778888998888744 45555553
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.5e-15 Score=147.95 Aligned_cols=263 Identities=17% Similarity=0.206 Sum_probs=178.6
Q ss_pred CCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCC--CccccccccCCCceeeeEEEE
Q 008820 271 DKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLG--HEPLKKWNEEKDWRYSGIHAL 348 (552)
Q Consensus 271 dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 348 (552)
++.+.||+++........-.-...|.++.|+|.+.++++.|+.+|.|.+||++.... ...+......+......+...
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 347999999876333333336688999999999999999999999999999997765 333333322222222222111
Q ss_pred -eeCCCEEEEeeCCCcEEEEECCCCceeE-E-----ec------CCCCCeEEEEEe---CCEEEEEeCCCcEEEEECCCC
Q 008820 349 -TTSGRYLYTGSGDRTIKAWSLLDGTLSC-T-----MS------GHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDH 412 (552)
Q Consensus 349 -~~~~~~l~sgs~dg~i~iwd~~~~~~~~-~-----~~------~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~ 412 (552)
+..+.-+++++.||.|..|+++.-.... . .. .....+++++|. ++.++.|+.+|.|.--+-...
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 2223469999999999999987543211 1 11 122357888988 559999999999987443322
Q ss_pred cee--------EEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC---cceeeeecccceEEEEEe---cCCEEE
Q 008820 413 SLL--------TVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND---KFMKSMQTHKGSVFAVFL---EGKWLF 478 (552)
Q Consensus 413 ~~~--------~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~---~~~~~~~~h~~~v~~v~~---~~~~l~ 478 (552)
+.. ..+.. +.+.+.. +.++|=+..++..+.|.+++||... .++..+..+...+++++| ....++
T Consensus 381 ~~~~~~~~~~~~~~~~-h~g~v~~-v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFIT-HIGPVYA-VSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred cccccccccccccccc-cCcceEe-eecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEE
Confidence 211 12222 2455555 4777766666655569999999844 467777888888999998 566899
Q ss_pred EEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-Ce-EEEEeCCCeEEEEEecC
Q 008820 479 TGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-GK-LFVGCADRTVKIALCNR 538 (552)
Q Consensus 479 sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~-l~s~s~Dg~v~iw~~~~ 538 (552)
++..||.|.+||+............. +....+.+.|++ +. |++|...|++++|++..
T Consensus 459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~---~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEEPVLSQKV---CSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEcCCCceehhhhhccccCCcccccc---cccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 99999999999997654433322211 144566777776 54 88899999999999963
|
|
| >KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-17 Score=162.41 Aligned_cols=109 Identities=19% Similarity=0.366 Sum_probs=83.7
Q ss_pred hhcc--ccccccccc-chhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 14 AKVG--CVGSRICDK-EVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~-~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
-||| |||..++.. |. -.+++|||-|+|||++. +...+..+||||+|||||.||+|+ ||
T Consensus 157 VKIgDFGLAt~le~~~Er---k~TlCGTPNYIAPEVl~---------------k~gHsfEvDiWSlGcvmYtLL~G~PPF 218 (592)
T KOG0575|consen 157 VKIGDFGLATQLEYDGER---KKTLCGTPNYIAPEVLN---------------KSGHSFEVDIWSLGCVMYTLLVGRPPF 218 (592)
T ss_pred EEecccceeeeecCcccc---cceecCCCcccChhHhc---------------cCCCCCchhhhhhhhHHHhhhhCCCCc
Confidence 4777 999888855 55 57899999999999993 234458899999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
+..++. +++..+.......|. ....+.+++|.++|+.+|.+||++.++...
T Consensus 219 etk~vk-----------------ety~~Ik~~~Y~~P~----~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~h 269 (592)
T KOG0575|consen 219 ETKTVK-----------------ETYNKIKLNEYSMPS----HLSAEAKDLIRKLLRPNPSERPSLDEVLDH 269 (592)
T ss_pred ccchHH-----------------HHHHHHHhcCccccc----ccCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence 987666 223333332222222 355679999999999999999999887664
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-15 Score=145.48 Aligned_cols=264 Identities=19% Similarity=0.246 Sum_probs=184.2
Q ss_pred ceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccc
Q 008820 254 CVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPL 331 (552)
Q Consensus 254 ~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 331 (552)
.|..++|. |..|+.+..| .+.+||.+.|..+.++++|.+.|++++|+.+|. .+++|+.|..|.+|+-.-... +
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W~~klEG~---L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIWTSKLEGI---L 88 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCc-eeccCCCceeEEEecccccce---e
Confidence 78999998 7777776655 699999999999999999999999999999776 779999999999998542211 1
Q ss_pred cccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeCCCcEEEEEC
Q 008820 332 KKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSL 409 (552)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~ 409 (552)
+ + .+. ....+..|+|-...+++++- ...-+|........+ .+ ....|.+.+|. ++ +++.|-.||+|.+-+-
T Consensus 89 k-Y--SH~-D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K-~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 89 K-Y--SHN-DAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSK-HK-SSSRIICCSWTNDGQYLALGMFNGTISIRNK 161 (1081)
T ss_pred e-e--ccC-CeeeEeecCchHHHhhhcch-hhccccChhhhhHHh-hh-hheeEEEeeecCCCcEEEEeccCceEEeecC
Confidence 1 1 111 23345566777778999887 447789876543322 11 24457777887 44 9999999999999864
Q ss_pred CCCceeEEEec--CCCCceEEEEEEcCCC-----CEEEEEECCCcEEEEeCC-cceeeeecccceEEEEE--ecCCEEEE
Q 008820 410 SDHSLLTVLEE--DSSGAVSSVLSLTAVQ-----HTLVVSHESGSIKVWRND-KFMKSMQTHKGSVFAVF--LEGKWLFT 479 (552)
Q Consensus 410 ~~~~~~~~~~~--~~~~~~~~~~~~s~~~-----~~l~~g~~dg~i~iwd~~-~~~~~~~~h~~~v~~v~--~~~~~l~s 479 (552)
+++....+.. ....++.+ ++|+|.. ..+++.....++.+|.+. +.+..-+.-.-...|++ ++|.++..
T Consensus 162 -~gEek~~I~Rpgg~Nspiws-i~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 162 -NGEEKVKIERPGGSNSPIWS-ICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILL 239 (1081)
T ss_pred -CCCcceEEeCCCCCCCCceE-EEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEE
Confidence 4444433432 33455666 4777653 467777778888888743 33322222222223444 49999999
Q ss_pred EeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEEeCCCeEEEEEec
Q 008820 480 GGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCADRTVKIALCN 537 (552)
Q Consensus 480 gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~Dg~v~iw~~~ 537 (552)
|+.|+.+++|.-++-.+ .+... .+..|..++..|+ .++.|+.||+|-.|++-
T Consensus 240 GGsdk~L~~fTR~GvrL-GTvg~-----~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 240 GGSDKQLSLFTRDGVRL-GTVGE-----QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccCCCceEEEeecCeEE-eeccc-----cceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 99999999997655433 22222 2778999999964 38899999999999874
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-14 Score=135.66 Aligned_cols=268 Identities=13% Similarity=0.193 Sum_probs=196.4
Q ss_pred CCCCCccccceeeecCcceEEEeeCCCeEEEEEeecC-----------ccceEEEEEc--CC-EEEEEeCCCcEEEEeCC
Q 008820 215 ENSDGADIDQARAAGGVKDLVNGLSKGNVKFKDLQGH-----------RDCVTGLAVG--GG-FLFSSSFDKSIHVWSLK 280 (552)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H-----------~~~V~~l~~s--~~-~l~s~s~dg~I~iwd~~ 280 (552)
..+....+.++.|.+.-..++++..++.++++.+.|. ..+|.+.+|. |. .+++++.....+.||+.
T Consensus 209 ~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 209 AHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred CCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence 3445567899999999999999999999999998764 3578888888 66 89999999999999999
Q ss_pred CCeEEEE--EeCCC-CCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEE
Q 008820 281 DFSHVHT--FKGHD-HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYT 357 (552)
Q Consensus 281 ~~~~~~~--~~~h~-~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 357 (552)
+.+..+. +.++. ..+.....+++++ +++..+..|.|.+....++.....++.. ....-.+|+.+++.|++
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~Kie------G~v~~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIE------GVVSDFTFSSDSKELLA 361 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeec------cEEeeEEEecCCcEEEE
Confidence 8775432 33443 3566777788666 7889999999999987765544333321 12223467788888988
Q ss_pred eeCCCcEEEEECCCCceeEEecCCCCCe--EEEEEe--CCEEEEEeCCCcEEEEECCC------CceeEEEecCCCCceE
Q 008820 358 GSGDRTIKAWSLLDGTLSCTMSGHKSAV--STLAVC--NGVLYSGSRDGTIRLWSLSD------HSLLTVLEEDSSGAVS 427 (552)
Q Consensus 358 gs~dg~i~iwd~~~~~~~~~~~~h~~~v--~~l~~~--~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~~~~~~~ 427 (552)
.+.+|.|.+||+++..+++.+.. .+.| ++++.+ +.+|++|+..|.|.|||..+ .+++..+..-. ..+.
T Consensus 362 ~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt-t~It 439 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT-TAIT 439 (514)
T ss_pred EcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh-eeee
Confidence 88999999999999999988863 2333 345544 55999999999999999653 34444443321 2233
Q ss_pred EEEEEcCCCCEEEEEEC--CCcEEEEeCCcc--eeee---ecccceEEEEEe--cCCEEEEEeCCCeEEEEecC
Q 008820 428 SVLSLTAVQHTLVVSHE--SGSIKVWRNDKF--MKSM---QTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 428 ~~~~~s~~~~~l~~g~~--dg~i~iwd~~~~--~~~~---~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~ 492 (552)
. +.|+++..+|+.++. +..+++-.+..+ ...+ ...-+.|+|++| .+.+|+.|..+|.+.+|.+.
T Consensus 440 s-l~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 440 S-LQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred e-eeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 3 799999999988875 567888765432 2222 223346677776 89999999999999999874
|
|
| >KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-17 Score=153.06 Aligned_cols=99 Identities=17% Similarity=0.176 Sum_probs=75.1
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDY 96 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~ 96 (552)
||+|.-+..+.. .++|+|||.|||||++ ....++..+|.||||++|||||+|. ||.+.+...
T Consensus 170 gL~k~~~~~~~~--t~tfcGT~eYmAPEil---------------~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~~~ 232 (357)
T KOG0598|consen 170 GLCKEDLKDGDA--TRTFCGTPEYMAPEIL---------------LGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDVKK 232 (357)
T ss_pred ccchhcccCCCc--cccccCCccccChHHH---------------hcCCCCcccchHhHHHHHHHHhhCCCCCcCccHHH
Confidence 888855555443 7889999999999999 2356779999999999999999999 999877662
Q ss_pred hhhccccCCCchhhhhhhhHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcc
Q 008820 97 IRCVSTKASDDNIACLGMYMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (552)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~ 154 (552)
+ .+++.... .........+..+++.++|..+|.+|-.
T Consensus 233 ~---------------------~~~I~~~k~~~~p~~ls~~ardll~~LL~rdp~~RLg 270 (357)
T KOG0598|consen 233 M---------------------YDKILKGKLPLPPGYLSEEARDLLKKLLKRDPRQRLG 270 (357)
T ss_pred H---------------------HHHHhcCcCCCCCccCCHHHHHHHHHHhccCHHHhcC
Confidence 2 22222222 2223335667999999999999999964
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.8e-15 Score=142.98 Aligned_cols=244 Identities=17% Similarity=0.217 Sum_probs=176.4
Q ss_pred EEEeeCCCeEEEEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEE
Q 008820 234 LVNGLSKGNVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISG 311 (552)
Q Consensus 234 ~~~~~~~~~~~~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~ 311 (552)
++....+.+..+.+++||.+.|.|++|+ |+.++||+.|..|.+|+-+-...++ ..|.+.|.|+.|+|-.. .+++|
T Consensus 35 lliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk--YSH~D~IQCMsFNP~~h-~LasC 111 (1081)
T KOG1538|consen 35 LLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK--YSHNDAIQCMSFNPITH-QLASC 111 (1081)
T ss_pred EEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee--eccCCeeeEeecCchHH-Hhhhc
Confidence 3333444445688999999999999999 9999999999999999854322222 25999999999999655 55666
Q ss_pred cCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEe---cCCCCCeEEE
Q 008820 312 DSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM---SGHKSAVSTL 388 (552)
Q Consensus 312 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l 388 (552)
+- ...-+|..+... + ..++.......+++..||++++.|-.||+|.+-+. +++....+ .+..++|.++
T Consensus 112 sL-sdFglWS~~qK~----V---~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi 182 (1081)
T KOG1538|consen 112 SL-SDFGLWSPEQKS----V---SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSI 182 (1081)
T ss_pred ch-hhccccChhhhh----H---HhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEE
Confidence 54 335567654321 1 11122233345577788999999999999999874 45544444 3477899999
Q ss_pred EEe-------CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC-cceeee
Q 008820 389 AVC-------NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND-KFMKSM 460 (552)
Q Consensus 389 ~~~-------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~-~~~~~~ 460 (552)
+|+ ++.+++.....++.++.+. |+.+..-+. -+.-..++.+-++|.++..|+.|+.+.+|.-. -.+.++
T Consensus 183 ~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~--L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTv 259 (1081)
T KOG1538|consen 183 CWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRA--LNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTV 259 (1081)
T ss_pred EecCCCCCCccceEEEEeccceeEEEEec-ceeeccccc--CCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeec
Confidence 998 2378889999999999875 443332211 12223447888999999999999999999633 344555
Q ss_pred ecccceEEEEE--ecCCEEEEEeCCCeEEEEecC
Q 008820 461 QTHKGSVFAVF--LEGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 461 ~~h~~~v~~v~--~~~~~l~sgs~dg~i~iwd~~ 492 (552)
.....+|+++. |++++++.|+.||+|..|++.
T Consensus 260 g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 260 GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 55677888776 599999999999999999874
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=146.96 Aligned_cols=232 Identities=18% Similarity=0.262 Sum_probs=158.1
Q ss_pred EcCCCcEEEEeCCCCCCCcc--ccccccCCCceeeeEEEEee---CCCEEEEeeCCCcEEEEECCCC-------ceeEEe
Q 008820 311 GDSGGGIFVWSFSFPLGHEP--LKKWNEEKDWRYSGIHALTT---SGRYLYTGSGDRTIKAWSLLDG-------TLSCTM 378 (552)
Q Consensus 311 ~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~l~sgs~dg~i~iwd~~~~-------~~~~~~ 378 (552)
++..|.|-|++++.+..... +..+. ....+..+.+ |...|++++.||.|++|.+..+ .+...+
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~-----Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~l 673 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLF-----NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKIL 673 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccc-----cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceee
Confidence 45579999999986543221 11111 1223444544 4569999999999999998644 455677
Q ss_pred cCCCCCeEEEEEe---CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc
Q 008820 379 SGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK 455 (552)
Q Consensus 379 ~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 455 (552)
..|...|+++.|+ .+.|++++.|.+|++||+++++....+.+|. +.+.. ++|+|+|+.+++.+.||+|++|+.++
T Consensus 674 t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHt-dqIf~-~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 674 TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHT-DQIFG-IAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCc-CceeE-EEECCCCcceeeeecCceEEEeCCCC
Confidence 8899999999999 5699999999999999999999998998875 44555 69999999999999999999999765
Q ss_pred ceeeeecccceE----EEEEe--cCCEEEEEeCCC----eEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCe-EEE
Q 008820 456 FMKSMQTHKGSV----FAVFL--EGKWLFTGGWDK----TVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK-LFV 524 (552)
Q Consensus 456 ~~~~~~~h~~~v----~~v~~--~~~~l~sgs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~s 524 (552)
..+.+....+++ ..+.| +|+++++.+.|. .|.+||..+-.........-.+....-|..-.+..+. +++
T Consensus 752 ~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lflt 831 (1012)
T KOG1445|consen 752 REQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLT 831 (1012)
T ss_pred CCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEe
Confidence 444333222222 22334 999999888764 5788887653322211111111111112222222233 888
Q ss_pred EeCCCeEEEEEecCCcceeEEEecc
Q 008820 525 GCADRTVKIALCNRQIPEIFSLLLH 549 (552)
Q Consensus 525 ~s~Dg~v~iw~~~~~~~~~~~~~gh 549 (552)
|-.|..|++|.+-...+-+..+..|
T Consensus 832 GKGD~~v~~yEv~~esPy~lpl~~f 856 (1012)
T KOG1445|consen 832 GKGDRFVNMYEVIYESPYLLPLAPF 856 (1012)
T ss_pred cCCCceEEEEEecCCCceeeecccc
Confidence 9999999999997666655555444
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5e-15 Score=133.33 Aligned_cols=186 Identities=17% Similarity=0.241 Sum_probs=145.0
Q ss_pred CEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe----CCEEEEEeCCCcEEEEECCCCceeEEEecCC-CCceE
Q 008820 353 RYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC----NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDS-SGAVS 427 (552)
Q Consensus 353 ~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~ 427 (552)
+.++++-..|+|++||..+++.+..++++...++.+.|. +..+.+|+.||+|++||+|.......+.... ++...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 468888889999999999999999999999999999998 2489999999999999999877655554332 22333
Q ss_pred EEEEEcCCCCEEEEEEC----CCcEEEEeCCccee----eeecccceEEEEEe---cCCEEEEEeCCCeEEEEecCCCee
Q 008820 428 SVLSLTAVQHTLVVSHE----SGSIKVWRNDKFMK----SMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQELAGDEF 496 (552)
Q Consensus 428 ~~~~~s~~~~~l~~g~~----dg~i~iwd~~~~~~----~~~~h~~~v~~v~~---~~~~l~sgs~dg~i~iwd~~~~~~ 496 (552)
.+++....++.+++|.. +-.|.+||.++..+ -...|...|+++.| +.+.|++||.||.|.+||+.....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 33455557788888764 67899999875433 33579999999988 889999999999999999986533
Q ss_pred eeeeccCCCcccCcceEEEEEe-CC--eEEEEeCCCeEEEEEecCCc
Q 008820 497 EEDVIPTGAIPCGSVITALLYW-QG--KLFVGCADRTVKIALCNRQI 540 (552)
Q Consensus 497 ~~~~~~~~~~~~~~~v~~l~~~-~~--~l~s~s~Dg~v~iw~~~~~~ 540 (552)
.-.+.+ .+.+.+.|..+.|. ++ ++.+-+.++...+|+++...
T Consensus 201 eDaL~~--viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 201 EDALLH--VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred hhhHHH--hhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 222221 23346669999998 55 69999999999999998544
|
|
| >KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-17 Score=153.88 Aligned_cols=117 Identities=18% Similarity=0.254 Sum_probs=78.9
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p 88 (552)
-+-|++ |+||..... -||.+++|||+|.|||++..+ | ...+..+.|+|||||+||-+|+|. |
T Consensus 316 ~llKItDFGlAK~~g~~---sfm~TlCGTpsYvAPEVl~~k----g--------~~~~~~kVDiWSlGcvLfvcLsG~pP 380 (475)
T KOG0615|consen 316 CLLKITDFGLAKVSGEG---SFMKTLCGTPSYVAPEVLASK----G--------VEYYPSKVDIWSLGCVLFVCLSGYPP 380 (475)
T ss_pred eEEEecccchhhccccc---eehhhhcCCccccChhheecC----C--------eecccchheeeeccceEEEEeccCCC
Confidence 345677 888877633 379999999999999999221 1 112224899999999999999999 9
Q ss_pred chHHHhhh-hhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 89 FTKELIDY-IRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 89 f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
|..+.... +. ..+.......-...+.....+..++|.++|..+|+.||+..++.+
T Consensus 381 FS~~~~~~sl~-----------------eQI~~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~ 436 (475)
T KOG0615|consen 381 FSEEYTDPSLK-----------------EQILKGRYAFGPLQWDRISEEALDLINWMLVVDPENRPSADEALN 436 (475)
T ss_pred cccccCCccHH-----------------HHHhcCcccccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhc
Confidence 97654331 21 011111111111223333445779999999999999999887655
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-15 Score=144.69 Aligned_cols=255 Identities=20% Similarity=0.293 Sum_probs=170.0
Q ss_pred EEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCC-----CCCCccccccccCCCceeeeEEEEeeCCCEEEEeeC
Q 008820 286 HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF-----PLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG 360 (552)
Q Consensus 286 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~ 360 (552)
.++..|.+.|..++|.|. ...+++++.||++++|+++. .....++.++..|..... +.++..++.++++|+.
T Consensus 288 ~tl~s~~d~ir~l~~~~s-ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl--~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPS-EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVL--CVVVPSNGEHCYSGGI 364 (577)
T ss_pred eeeecchhhhhhhhcCCC-CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceE--EEEecCCceEEEeecc
Confidence 356678899999999774 45789999999999999942 223345566666654322 2456778889999999
Q ss_pred CCcEEEEECCCC----------ceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEE
Q 008820 361 DRTIKAWSLLDG----------TLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSS 428 (552)
Q Consensus 361 dg~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 428 (552)
||+|+.|++... .....+.||.+.|+.++++ ...|++++.||+++.|+.....+ .++..........
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999999965411 2334678999999999999 55899999999999999876665 4444333333333
Q ss_pred EEEEcCCC-CEEEEEECCCcEEEEeCC--cceeeeecc-------cceEEEEE--ecCCEEEEEeCCCeEEEEecCCCee
Q 008820 429 VLSLTAVQ-HTLVVSHESGSIKVWRND--KFMKSMQTH-------KGSVFAVF--LEGKWLFTGGWDKTVSVQELAGDEF 496 (552)
Q Consensus 429 ~~~~s~~~-~~l~~g~~dg~i~iwd~~--~~~~~~~~h-------~~~v~~v~--~~~~~l~sgs~dg~i~iwd~~~~~~ 496 (552)
.+.+-... .+.++...-+.-.+++.. .....+... ...+..+. +.....+++..|+.|+++|..++..
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence 23333222 222222222222223321 222222211 11223332 3778999999999999999998876
Q ss_pred eeeeccCCCcccCcceEEEEEeCC--eEEEEeCCCeEEEEEecCCcceeEEEeccc
Q 008820 497 EEDVIPTGAIPCGSVITALLYWQG--KLFVGCADRTVKIALCNRQIPEIFSLLLHI 550 (552)
Q Consensus 497 ~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~Dg~v~iw~~~~~~~~~~~~~gh~ 550 (552)
...... +...++++++.++ .|++++.||.+++|+++ ....+.....|+
T Consensus 524 l~s~~a-----~~~svtslai~~ng~~l~s~s~d~sv~l~kld-~k~~~~es~~~r 573 (577)
T KOG0642|consen 524 LHSMVA-----HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD-VKTCVLESTAHR 573 (577)
T ss_pred chheee-----ccceecceeecCCCceEEeecCCceeehhhcc-chheeecccccc
Confidence 554433 3667899999864 49999999999999997 344555555554
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.5e-15 Score=133.47 Aligned_cols=248 Identities=12% Similarity=0.127 Sum_probs=172.4
Q ss_pred EEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCC---CCccccccccCCCceeeeEEEEee--CCCEEEEeeC
Q 008820 286 HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPL---GHEPLKKWNEEKDWRYSGIHALTT--SGRYLYTGSG 360 (552)
Q Consensus 286 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~sgs~ 360 (552)
+.+.+|.+.|+++.|+.+ ..+|++|+.|..+++|+++..- ..+++.....+ +...+.++.+ .+..+++|..
T Consensus 50 KD~~~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~---H~SNIF~L~F~~~N~~~~SG~~ 125 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHP---HRSNIFSLEFDLENRFLYSGER 125 (609)
T ss_pred hhhhhhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcCCCCceeccCc---cccceEEEEEccCCeeEecCCC
Confidence 445689999999999986 5688999999999999987432 22333333222 3334555544 4569999999
Q ss_pred CCcEEEEECCCCceeEEecC--CCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCc-eeEEEe-cCCCCceEEEEEEcC
Q 008820 361 DRTIKAWSLLDGTLSCTMSG--HKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHS-LLTVLE-EDSSGAVSSVLSLTA 434 (552)
Q Consensus 361 dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~-~~~~~~-~~~~~~~~~~~~~s~ 434 (552)
+++|...|+++.+.+..+.. ..+.|+.+..+ ++.+++.+.++.|.+||.+... ....+. ........+ ..|.|
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t-~~F~P 204 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYT-AEFHP 204 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcccee-eeecC
Confidence 99999999999998887752 33589999888 7899999999999999998765 332222 222233344 46666
Q ss_pred C-CCEEEEEECCCcEEEEeCCcceeeee------cc---cceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeee-ec
Q 008820 435 V-QHTLVVSHESGSIKVWRNDKFMKSMQ------TH---KGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEED-VI 501 (552)
Q Consensus 435 ~-~~~l~~g~~dg~i~iwd~~~~~~~~~------~h---~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~-~~ 501 (552)
. ..+|++.+..+-+-+||.+.+...+. +- ...-+++.| +|..+.+--....-.+||+.+.++... ..
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence 4 56888899999999999775433221 11 111233334 788887776666667888877544332 22
Q ss_pred cCC-CcccCcceEEEEEeCCe-EEEEeCCCeEEEEEecC
Q 008820 502 PTG-AIPCGSVITALLYWQGK-LFVGCADRTVKIALCNR 538 (552)
Q Consensus 502 ~~~-~~~~~~~v~~l~~~~~~-l~s~s~Dg~v~iw~~~~ 538 (552)
+.. .......+.+++|-+++ +++|+.+=.|++|.+..
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred CCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCC
Confidence 221 22234557788888766 99999999999999873
|
|
| >KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.7e-17 Score=148.76 Aligned_cols=109 Identities=20% Similarity=0.345 Sum_probs=80.2
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDY 96 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~ 96 (552)
|+|+.+.++ ...+++||-+|||||.+ .| ..++.++||||||.+|+|+.+|+ ||.......
T Consensus 224 GVS~~lvnS----~a~tfvGT~~YMsPERi------~g---------~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~ 284 (364)
T KOG0581|consen 224 GVSGILVNS----IANTFVGTSAYMSPERI------SG---------ESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPY 284 (364)
T ss_pred cccHHhhhh----hcccccccccccChhhh------cC---------CcCCcccceecccHHHHHHhhCCCCCCCcCCCC
Confidence 778777777 46899999999999999 44 67788999999999999999999 998752211
Q ss_pred hhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhc--CccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 97 IRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG--SEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
+ ....+...+..-+.+..+ ...+++++++..||+++|.+||+..++.+.
T Consensus 285 ~----------------~~~~Ll~~Iv~~ppP~lP~~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~H 335 (364)
T KOG0581|consen 285 L----------------DIFELLCAIVDEPPPRLPEGEFSPEFRSFVSCCLRKDPSERPSAKQLLQH 335 (364)
T ss_pred C----------------CHHHHHHHHhcCCCCCCCcccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence 1 011222333222222222 356679999999999999999998876653
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8e-16 Score=153.02 Aligned_cols=227 Identities=22% Similarity=0.307 Sum_probs=174.2
Q ss_pred cccceeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q 008820 221 DIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFK 289 (552)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 289 (552)
.+-++.+...+.+++++..+..+++|. ..||.+.|+.++.+ .-+++++|.|..|++|.+.++.++..+.
T Consensus 192 aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLr 271 (1113)
T KOG0644|consen 192 AVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLR 271 (1113)
T ss_pred heeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHh
Confidence 367778889999999999999999997 46999999999998 7789999999999999999999999999
Q ss_pred CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCc---cccc-----------------cccC-----CCceeee
Q 008820 290 GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHE---PLKK-----------------WNEE-----KDWRYSG 344 (552)
Q Consensus 290 ~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~-----------------~~~~-----~~~~~~~ 344 (552)
+|++.|++++|+|- .+.+.||++++||.+-..... +... +... ...+...
T Consensus 272 ghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~ 346 (1113)
T KOG0644|consen 272 GHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFE 346 (1113)
T ss_pred ccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhh
Confidence 99999999999984 478899999999987211000 0000 0000 0000000
Q ss_pred EEE-------Eee---C-CCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CC-EEEEEeCCCcEEEEECC
Q 008820 345 IHA-------LTT---S-GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NG-VLYSGSRDGTIRLWSLS 410 (552)
Q Consensus 345 ~~~-------~~~---~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~~ 410 (552)
+.+ |.. + ..+.+++-.+-.+++|++.+|...+.+.+|...+..+.++ +. ...+++.||...|||+-
T Consensus 347 ~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~ 426 (1113)
T KOG0644|consen 347 QLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIW 426 (1113)
T ss_pred HhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecc
Confidence 000 000 1 1234444556678899999999999999999999999999 33 67799999999999999
Q ss_pred CCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 008820 411 DHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND 454 (552)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 454 (552)
.|.+++.+...+. .... ..|+++|..++....-|.++|...+
T Consensus 427 eg~pik~y~~gh~-kl~d-~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 427 EGIPIKHYFIGHG-KLVD-GKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred cCCcceeeecccc-eeec-cccCCCCceEecCCCCCceEEeccC
Confidence 9998888776543 3333 4899999999998888999998754
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-13 Score=131.64 Aligned_cols=267 Identities=13% Similarity=0.158 Sum_probs=162.3
Q ss_pred EEEEeCCCcEEEEeCCC-Ce--EEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCce
Q 008820 265 LFSSSFDKSIHVWSLKD-FS--HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWR 341 (552)
Q Consensus 265 l~s~s~dg~I~iwd~~~-~~--~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 341 (552)
+++...|+.|++||+.+ ++ .+.++. +.+....++++|+++.+++++..++.|.+|+++............... .
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~--~ 81 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPG--S 81 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCC--C
Confidence 34447799999999964 33 455554 345677889999887666666778999999997322111122111111 1
Q ss_pred eeeEEEEeeCCCEEEEeeC-CCcEEEEECCC-C---ceeEEecCCCCCeEEEEEe-CC-EE-EEEeCCCcEEEEECCCCc
Q 008820 342 YSGIHALTTSGRYLYTGSG-DRTIKAWSLLD-G---TLSCTMSGHKSAVSTLAVC-NG-VL-YSGSRDGTIRLWSLSDHS 413 (552)
Q Consensus 342 ~~~~~~~~~~~~~l~sgs~-dg~i~iwd~~~-~---~~~~~~~~h~~~v~~l~~~-~~-~l-~s~~~dg~i~iwd~~~~~ 413 (552)
..-.+++++++.+++++. ++.|.+||+++ + +.+..+. +.....+++++ ++ ++ ++...++.|.+||+.+..
T Consensus 82 -p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 82 -PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred -ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 123578899997777764 88999999964 3 2233333 23345677788 33 55 455567999999997643
Q ss_pred eeE-----EEecCCCCceEEEEEEcCCCCEEEEEEC-CCcEEEEeCCc------ceeeeeccc------ceE--EEEEec
Q 008820 414 LLT-----VLEEDSSGAVSSVLSLTAVQHTLVVSHE-SGSIKVWRNDK------FMKSMQTHK------GSV--FAVFLE 473 (552)
Q Consensus 414 ~~~-----~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~------~~~~~~~h~------~~v--~~v~~~ 473 (552)
.+. ......... ...+.|+|++++++++.. ++.|.+||+.. .++.+..+. ... ..++++
T Consensus 160 ~l~~~~~~~~~~~~g~~-p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAG-PRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD 238 (330)
T ss_pred cccccCCCceecCCCCC-CceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence 221 111111111 223689999999988876 89999999642 122222211 111 234569
Q ss_pred CCEEEEEeC-CCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEEe-CCCeEEEEEecCC
Q 008820 474 GKWLFTGGW-DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGC-ADRTVKIALCNRQ 539 (552)
Q Consensus 474 ~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s-~Dg~v~iw~~~~~ 539 (552)
+++++++.. ++.|.+|++............ .........+.+++ .+|+++. .+++|.+|+++..
T Consensus 239 g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~--~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 239 GRHLYACDRTASLISVFSVSEDGSVLSFEGH--QPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred CCEEEEecCCCCeEEEEEEeCCCCeEEEeEE--EeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCC
Confidence 999998854 789999999643211111111 11112344567774 3466655 4899999998743
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-16 Score=156.13 Aligned_cols=245 Identities=19% Similarity=0.285 Sum_probs=182.7
Q ss_pred EEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC
Q 008820 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (552)
Q Consensus 246 ~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (552)
..|.||.++|.|..|. |.++++|+.|..|+||..+++.++.+..||.+.|+.++.+.+
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~-------------------- 243 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN-------------------- 243 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchh--------------------
Confidence 4478999999999999 999999999999999999999999999999999998876432
Q ss_pred CCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEeCCCc
Q 008820 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGT 403 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~ 403 (552)
+..+++++.|..|++|.+.++.++..+.+|++.|++++|++-. +.+.||+
T Consensus 244 ----------------------------n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~--sss~dgt 293 (1113)
T KOG0644|consen 244 ----------------------------NTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGT 293 (1113)
T ss_pred ----------------------------hhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc--cCCCCCc
Confidence 1257778899999999999999999999999999999998543 7889999
Q ss_pred EEEEECCCCceeEE---EecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcceeeeecccceEEEEEe---cCCEE
Q 008820 404 IRLWSLSDHSLLTV---LEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFL---EGKWL 477 (552)
Q Consensus 404 i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~h~~~v~~v~~---~~~~l 477 (552)
+++||.+-.-.+.. ..... +.....+-+..++.-+++|+.|+.-..|....+. .+...+.-+.. ...+.
T Consensus 294 ~~~wd~r~~~~~y~prp~~~~~-~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~----~~~~~lif~t~ssd~~~~~ 368 (1113)
T KOG0644|consen 294 CRIWDARLEPRIYVPRPLKFTE-KDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA----WRSNLLIFVTRSSDLSSIV 368 (1113)
T ss_pred eEeccccccccccCCCCCCccc-ccceeeeeccccccccccccCCcccccchhhHhh----hhccceEEEeccccccccc
Confidence 99999982111111 11111 2223335667778889999999998888754321 12221111111 23566
Q ss_pred EEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--Ce-EEEEeCCCeEEEEEecCCcceeEEEeccc
Q 008820 478 FTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GK-LFVGCADRTVKIALCNRQIPEIFSLLLHI 550 (552)
Q Consensus 478 ~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~-l~s~s~Dg~v~iw~~~~~~~~~~~~~gh~ 550 (552)
+++-.+-.+++|++.++.+......+ ...+..+.++| .+ ..+++.||...|||+-...+.-..+.||.
T Consensus 369 ~~ar~~~~~~vwnl~~g~l~H~l~gh-----sd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~ 439 (1113)
T KOG0644|consen 369 VTARNDHRLCVWNLYTGQLLHNLMGH-----SDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG 439 (1113)
T ss_pred eeeeeeeEeeeeecccchhhhhhccc-----ccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc
Confidence 77778889999999988655443332 55678888885 33 66899999999999987776655567764
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.8e-14 Score=119.88 Aligned_cols=229 Identities=16% Similarity=0.192 Sum_probs=160.6
Q ss_pred eEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCc-------cccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEE
Q 008820 295 VMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHE-------PLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAW 367 (552)
Q Consensus 295 v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iw 367 (552)
|.+-+++|..+ +|++|..+|.|.+..+.+..... .+-.... +..++..+.....+|++|+. |.|+-|
T Consensus 13 vf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqa----hdgpiy~~~f~d~~Lls~gd-G~V~gw 86 (325)
T KOG0649|consen 13 VFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQA----HDGPIYYLAFHDDFLLSGGD-GLVYGW 86 (325)
T ss_pred HHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccc----cCCCeeeeeeehhheeeccC-ceEEEe
Confidence 44456778554 78999999999999887432111 1111112 23345566666677888765 999999
Q ss_pred ECCCCce------eEEe--cCCC-----CCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEE
Q 008820 368 SLLDGTL------SCTM--SGHK-----SAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSL 432 (552)
Q Consensus 368 d~~~~~~------~~~~--~~h~-----~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 432 (552)
..+.... .... .-|. ..|+++... .+-++.++.|+.++.||+++|+...++++|. .-+.++ ..
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHt-DYvH~v-v~ 164 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHT-DYVHSV-VG 164 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCc-ceeeee-ee
Confidence 7653211 1111 1122 357777776 4567777799999999999999999999885 444443 34
Q ss_pred cCCCCEEEEEECCCcEEEEeCCc--ceeeee---------cc-cceEEEEEecCCEEEEEeCCCeEEEEecCCCeeeeee
Q 008820 433 TAVQHTLVVSHESGSIKVWRNDK--FMKSMQ---------TH-KGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDV 500 (552)
Q Consensus 433 s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~---------~h-~~~v~~v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~ 500 (552)
-.....+++|++||++++||.++ .++.+. .| ..+|.+++.+..+|++|+ ...+.+|.++..+....+
T Consensus 165 R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 165 RNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVF 243 (325)
T ss_pred cccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEE
Confidence 33445789999999999999663 333332 22 246788888999999887 457999999988776665
Q ss_pred ccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEecC
Q 008820 501 IPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCNR 538 (552)
Q Consensus 501 ~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~~ 538 (552)
.. .+.+..+.|.++.+++++..+.|.-|.++.
T Consensus 244 pi------pa~v~~v~F~~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 244 PI------PARVHLVDFVDDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred ec------ccceeEeeeecceEEEeccccceeeeeecc
Confidence 44 566888999999999999999999998874
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-14 Score=135.91 Aligned_cols=267 Identities=15% Similarity=0.200 Sum_probs=193.0
Q ss_pred CCCCCccccceeeecCcceEEEeeCCCeEEEEEeec--------CccceEEEEEc---CCEEEEEeCCCcEEEEeCCCC-
Q 008820 215 ENSDGADIDQARAAGGVKDLVNGLSKGNVKFKDLQG--------HRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDF- 282 (552)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~~- 282 (552)
...+...+.+....+.+..+++|..+|.+++|.+.+ -.+.|.|++|+ ...++.++....+.|-+..-|
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~ 475 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD 475 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence 344455677777888999999999999999999754 35689999998 333444444444555443211
Q ss_pred ------------------------------------eEEEEEeCCCCCeEEEEEecCCCCEEEEEcC--CCcEEEEeCCC
Q 008820 283 ------------------------------------SHVHTFKGHDHKVMAVVYVDEDQPLCISGDS--GGGIFVWSFSF 324 (552)
Q Consensus 283 ------------------------------------~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~--dg~i~vwd~~~ 324 (552)
+-++..-.|...|..+.|+..|.++..++.. ...|.|.++..
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 0012223477899999999987755433332 35688888876
Q ss_pred CCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCC
Q 008820 325 PLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDG 402 (552)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg 402 (552)
.....+++...+. .....|+|...++++++. ..|++||+.....++++......|.+++.+ ++.|+.|+.|+
T Consensus 556 ~~sQ~PF~kskG~-----vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 556 RKSQSPFRKSKGL-----VQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred ccccCchhhcCCc-----eeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 5544444332221 123467777778888876 679999999988888888788899999999 45999999999
Q ss_pred cEEEEECCCC-ceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEe------C-C----cceeeeecccce----
Q 008820 403 TIRLWSLSDH-SLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR------N-D----KFMKSMQTHKGS---- 466 (552)
Q Consensus 403 ~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd------~-~----~~~~~~~~h~~~---- 466 (552)
.+..+|+.-+ ++.+++..| ...+.. +++++.-.++++|+.||++.|+. + . -+++.+.+|...
T Consensus 630 k~~WfDldlsskPyk~lr~H-~~avr~-Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~g 707 (733)
T KOG0650|consen 630 KMCWFDLDLSSKPYKTLRLH-EKAVRS-VAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLG 707 (733)
T ss_pred eeEEEEcccCcchhHHhhhh-hhhhhh-hhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccc
Confidence 9999999765 455555555 455555 58999999999999999999984 2 1 256778888766
Q ss_pred EEEEEe--cCCEEEEEeCCCeEEEE
Q 008820 467 VFAVFL--EGKWLFTGGWDKTVSVQ 489 (552)
Q Consensus 467 v~~v~~--~~~~l~sgs~dg~i~iw 489 (552)
|....| ..-+|++++.||+|++|
T Consensus 708 VLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 708 VLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eEeecccCCCceEEecCCCceEEee
Confidence 776666 77899999999999998
|
|
| >KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.4e-17 Score=139.79 Aligned_cols=107 Identities=20% Similarity=0.246 Sum_probs=84.5
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDY 96 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~ 96 (552)
|||..+.+.. ...+++|||.|||||++ .+..++..+||||.||+||-||.|+ ||.+++...
T Consensus 158 GvAi~l~~g~---~~~G~~GtP~fmaPEvv---------------rkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~r 219 (355)
T KOG0033|consen 158 GLAIEVNDGE---AWHGFAGTPGYLSPEVL---------------KKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHR 219 (355)
T ss_pred ceEEEeCCcc---ccccccCCCcccCHHHh---------------hcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHHH
Confidence 5677777554 47899999999999999 3466778999999999999999999 998865552
Q ss_pred hhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHH
Q 008820 97 IRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVW 159 (552)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~ 159 (552)
| ++.+.....+.+.+.+....++.++++++||..+|.+|.++.|..
T Consensus 220 l-----------------ye~I~~g~yd~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL 265 (355)
T KOG0033|consen 220 L-----------------YEQIKAGAYDYPSPEWDTVTPEAKSLIRRMLTVNPKKRITADEAL 265 (355)
T ss_pred H-----------------HHHHhccccCCCCcccCcCCHHHHHHHHHHhccChhhhccHHHHh
Confidence 2 333334445566667777888899999999999999999987643
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-13 Score=138.53 Aligned_cols=282 Identities=17% Similarity=0.202 Sum_probs=193.8
Q ss_pred ecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCC----CeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q 008820 249 QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD----FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (552)
Q Consensus 249 ~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~----~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 322 (552)
..|.-.+++.+++ ++++|+|..||.|.+|.--. ......+.=|...|.+++|+++|. +|++|+..|.+.+|.+
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGVLVLWQL 280 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCc-eEeecccceEEEEEee
Confidence 3577778999999 99999999999999996322 123455667999999999999877 6799999999999999
Q ss_pred CCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCC-----------CCCeEEEEEe
Q 008820 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGH-----------KSAVSTLAVC 391 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h-----------~~~v~~l~~~ 391 (552)
.+++ .+-+..+.. ...-..+++|+++.+....|+.|.+....+.....++.+- .+-.+.++++
T Consensus 281 ~T~~-kqfLPRLgs-----~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id 354 (792)
T KOG1963|consen 281 ETGK-KQFLPRLGS-----PILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID 354 (792)
T ss_pred cCCC-cccccccCC-----eeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc
Confidence 9876 333332221 1122367899999999999999999988665544443321 3334556666
Q ss_pred --CCEEEEEeCCCcEEEEECCCCceeEEEecC----CCCc-----eEEEEEEcCCCCEEEEEE--------CCC--cEEE
Q 008820 392 --NGVLYSGSRDGTIRLWSLSDHSLLTVLEED----SSGA-----VSSVLSLTAVQHTLVVSH--------ESG--SIKV 450 (552)
Q Consensus 392 --~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~-----~~~~~~~s~~~~~l~~g~--------~dg--~i~i 450 (552)
.+.++-.+..|.|.+||+.+.+.+..+... ..+. .....+.+..|.++++.- .|| .+++
T Consensus 355 pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKF 434 (792)
T KOG1963|consen 355 PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKF 434 (792)
T ss_pred CCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEE
Confidence 458888899999999999888766655421 1111 111234556688888763 233 4677
Q ss_pred EeCCcc-------eeeeecccceEEEEEe----cCCEEEEEeCCCeEEEEecCCCe------eeeeeccCCCcccCcceE
Q 008820 451 WRNDKF-------MKSMQTHKGSVFAVFL----EGKWLFTGGWDKTVSVQELAGDE------FEEDVIPTGAIPCGSVIT 513 (552)
Q Consensus 451 wd~~~~-------~~~~~~h~~~v~~v~~----~~~~l~sgs~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~v~ 513 (552)
|-.... ......|...+....+ ....+++++.||.+++|-+.+.+ -.+.....+.. +..+++
T Consensus 435 W~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy-~k~~i~ 513 (792)
T KOG1963|consen 435 WQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY-HKTPIT 513 (792)
T ss_pred EEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc-ccCccc
Confidence 853221 1122457766555443 34489999999999999884321 11222222221 467789
Q ss_pred EEEEe-CCeEEEEeCCCeEEEEEecC
Q 008820 514 ALLYW-QGKLFVGCADRTVKIALCNR 538 (552)
Q Consensus 514 ~l~~~-~~~l~s~s~Dg~v~iw~~~~ 538 (552)
+++|+ +|.+++.+.|++|.+||...
T Consensus 514 a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 514 ALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred chhhcCCCcEEEEecCCEEEEecCCC
Confidence 99999 67899999999999999984
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.4e-14 Score=144.31 Aligned_cols=245 Identities=18% Similarity=0.208 Sum_probs=160.8
Q ss_pred CeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEee-CCCEEEEeeCCCcEEEEECC-C
Q 008820 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAWSLL-D 371 (552)
Q Consensus 294 ~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sgs~dg~i~iwd~~-~ 371 (552)
+-..+.|+|-.. .++++...-.|++||.+.++....+..-.... ..+..+.-++- |...+++|+.||.|+||+-- +
T Consensus 1066 ~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~-t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDNGAFPD-TRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccCCCCCC-CccceeeeecccchhheeeeccCceEEEeccccc
Confidence 456677777544 56778778899999998765433322211111 11222222333 23489999999999999743 2
Q ss_pred ----CceeEEecC-------CCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCE
Q 008820 372 ----GTLSCTMSG-------HKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHT 438 (552)
Q Consensus 372 ----~~~~~~~~~-------h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 438 (552)
.+.+..+.+ ..+.=.-+.|. .++|+++|.-..|+|||.........+.......++...+-...|+.
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNI 1223 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCce
Confidence 223332221 11111233454 56888888899999999998888888776654444443334455899
Q ss_pred EEEEECCCcEEEEeCC-----cceeeeecccce--EEEEEe--cCC-EEEEEeCCCeEEEEecCCCeeeeeeccCCCccc
Q 008820 439 LVVSHESGSIKVWRND-----KFMKSMQTHKGS--VFAVFL--EGK-WLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPC 508 (552)
Q Consensus 439 l~~g~~dg~i~iwd~~-----~~~~~~~~h~~~--v~~v~~--~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 508 (552)
+++|..||.|++||.+ ..+..++.|... |..+++ .|- .|++|+.||.|++||++............+-.-
T Consensus 1224 i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1224 IAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY 1303 (1387)
T ss_pred EEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecccc
Confidence 9999999999999955 367788889887 888887 333 599999999999999998522222222111111
Q ss_pred CcceEEEEEeC--CeEEEEeCCCeEEEEEecCCcc
Q 008820 509 GSVITALLYWQ--GKLFVGCADRTVKIALCNRQIP 541 (552)
Q Consensus 509 ~~~v~~l~~~~--~~l~s~s~Dg~v~iw~~~~~~~ 541 (552)
.+..+++..++ ..+++|+. +.|+||++.....
T Consensus 1304 Gs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l 1337 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL 1337 (1387)
T ss_pred CccceeeeeccCCCeeeecCc-ceEEEEecChhhh
Confidence 33588888885 34777777 9999999985443
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-13 Score=137.04 Aligned_cols=308 Identities=15% Similarity=0.174 Sum_probs=207.8
Q ss_pred ccceeeecCcceEEEeeCCCeEEEEE-------------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEE
Q 008820 222 IDQARAAGGVKDLVNGLSKGNVKFKD-------------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVH 286 (552)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~ 286 (552)
+...+.++.+..++++..+|.+.+|. +.-|.+.|++++|+ |.+|+||+..|.+.+|.+.+++ .+
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kq 286 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQ 286 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cc
Confidence 67788899999999999999998886 55699999999999 9999999999999999999988 55
Q ss_pred EEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCC------CceeeeEEEEeeCCCEEEEeeC
Q 008820 287 TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEK------DWRYSGIHALTTSGRYLYTGSG 360 (552)
Q Consensus 287 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~sgs~ 360 (552)
-++.-.++|..+.++|++..+ +....|..|.+....+......+..+.... ........+++|..+.++-.+.
T Consensus 287 fLPRLgs~I~~i~vS~ds~~~-sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~ 365 (792)
T KOG1963|consen 287 FLPRLGSPILHIVVSPDSDLY-SLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGH 365 (792)
T ss_pred cccccCCeeEEEEEcCCCCeE-EEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCC
Confidence 567778999999999977744 666679999999876544444443333221 1122334567776678888889
Q ss_pred CCcEEEEECCCCceeEEec-----CC------CCCeEEEEEe--CCEEEEEe--------CC--CcEEEEECCCCc----
Q 008820 361 DRTIKAWSLLDGTLSCTMS-----GH------KSAVSTLAVC--NGVLYSGS--------RD--GTIRLWSLSDHS---- 413 (552)
Q Consensus 361 dg~i~iwd~~~~~~~~~~~-----~h------~~~v~~l~~~--~~~l~s~~--------~d--g~i~iwd~~~~~---- 413 (552)
.|.|.+||+.+.+.+..+. .+ .-.+++++.+ +++++|.- .| -.+++|-.....
T Consensus 366 ~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~ 445 (792)
T KOG1963|consen 366 PGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFI 445 (792)
T ss_pred CceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeE
Confidence 9999999998887766552 11 2235555555 44666653 23 347788765433
Q ss_pred eeEEEecCCCCceEEEEEEcCCCC-EEEEEECCCcEEEEeCC------c------ceeeeecccceEEEEEe--cCCEEE
Q 008820 414 LLTVLEEDSSGAVSSVLSLTAVQH-TLVVSHESGSIKVWRND------K------FMKSMQTHKGSVFAVFL--EGKWLF 478 (552)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iwd~~------~------~~~~~~~h~~~v~~v~~--~~~~l~ 478 (552)
....+..+|.......+..++... ..++++.||.+++|-.. + +...-..|..++.+..| || .++
T Consensus 446 L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dG-sll 524 (792)
T KOG1963|consen 446 LNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDG-SLL 524 (792)
T ss_pred EEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCC-cEE
Confidence 334444555544444444455444 89999999999999531 1 22222247778888888 56 555
Q ss_pred EEeCCCeEEEEecCC-CeeeeeeccCCCcccCcceEEEEEe----CCeEEEEeCCCeEEEEEec
Q 008820 479 TGGWDKTVSVQELAG-DEFEEDVIPTGAIPCGSVITALLYW----QGKLFVGCADRTVKIALCN 537 (552)
Q Consensus 479 sgs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~l~~~----~~~l~s~s~Dg~v~iw~~~ 537 (552)
+.+.|++|.+||..+ ..+....... ..++..+.+. .+..+.....+.+.+|++-
T Consensus 525 a~s~~~~Itiwd~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll 583 (792)
T KOG1963|consen 525 AVSFDDTITIWDYDTKNELLCTEGSR-----NWPIAELLFTAQTQNDGALVHATQQRLSVWNLL 583 (792)
T ss_pred EEecCCEEEEecCCChhhhhcccccc-----ccchHhHhhhcccccccceeeccCceEehHhhh
Confidence 566788999999988 3333322221 1122222222 2334455566778888875
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.9e-14 Score=144.26 Aligned_cols=260 Identities=15% Similarity=0.180 Sum_probs=172.8
Q ss_pred EeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCC----ccccccccCCCceeeeEEEEeeCC
Q 008820 277 WSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH----EPLKKWNEEKDWRYSGIHALTTSG 352 (552)
Q Consensus 277 wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 352 (552)
|+. .|..+..+..|...|..++.+++...++++||.||+|++||...-... +...++... ........+.+.+
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~--~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPE--GSRVEKVTMCGNG 1110 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEecc--CCceEEEEeccCC
Confidence 443 578888899999999999999988789999999999999998743222 111122111 1222344566788
Q ss_pred CEEEEeeCCCcEEEEECCCC--c-----eeEEecCC-CCCeEEE-EEe---CC-EEEEEeCCCcEEEEECCCCceeEEEe
Q 008820 353 RYLYTGSGDRTIKAWSLLDG--T-----LSCTMSGH-KSAVSTL-AVC---NG-VLYSGSRDGTIRLWSLSDHSLLTVLE 419 (552)
Q Consensus 353 ~~l~sgs~dg~i~iwd~~~~--~-----~~~~~~~h-~~~v~~l-~~~---~~-~l~s~~~dg~i~iwd~~~~~~~~~~~ 419 (552)
+.+|+++.||.|++.+++.. + .......+ .+.+.++ ++. .. .++.+..-+.|..||++......+++
T Consensus 1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh
Confidence 89999999999999998752 1 11122222 2233333 333 33 78888889999999999988777776
Q ss_pred cCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeee-cccceEEEEE--e---cCCEEEEEe--CCCeEEEE
Q 008820 420 EDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQ-THKGSVFAVF--L---EGKWLFTGG--WDKTVSVQ 489 (552)
Q Consensus 420 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~-~h~~~v~~v~--~---~~~~l~sgs--~dg~i~iw 489 (552)
........+.++.+|.+.+++.|+..|.+.+||++ .++..+. .+..++..+. + .....++++ ..+.|.+|
T Consensus 1191 ~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred cCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 55443344447999999999999999999999976 4444443 2445665543 3 235555554 46889999
Q ss_pred ecCCCeeeeeeccC-CC------ccc-------CcceEEEEEe--CCeEEEEeCCCeEEEEEecCC
Q 008820 490 ELAGDEFEEDVIPT-GA------IPC-------GSVITALLYW--QGKLFVGCADRTVKIALCNRQ 539 (552)
Q Consensus 490 d~~~~~~~~~~~~~-~~------~~~-------~~~v~~l~~~--~~~l~s~s~Dg~v~iw~~~~~ 539 (552)
++.++.....+... +. .+. ........+. ++.+++|+.|..||.||....
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 99988655444332 10 111 1111112222 356999999999999998743
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-13 Score=138.43 Aligned_cols=241 Identities=17% Similarity=0.178 Sum_probs=166.7
Q ss_pred CccceEEEEEc---CCEEEEEeCCCcEEEEeCCCCeE--EEE----EeCCCCCeEEEEEecCCC-CEEEEEcCCCcEEEE
Q 008820 251 HRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFSH--VHT----FKGHDHKVMAVVYVDEDQ-PLCISGDSGGGIFVW 320 (552)
Q Consensus 251 H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~~~~--~~~----~~~h~~~v~~v~~~~~~~-~~l~s~~~dg~i~vw 320 (552)
-...|+|++|+ ..+++.|+.+|.|.+||+..+.. ... ...|..+++.+.|..+.. .-+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 35689999998 89999999999999999987654 222 235899999999986432 347888899999999
Q ss_pred eCCCCCCCccccccccC-------CCceeeeEEEEee-CCCEEEEeeCCCcEEEEECCCC--------ceeEEecCCCCC
Q 008820 321 SFSFPLGHEPLKKWNEE-------KDWRYSGIHALTT-SGRYLYTGSGDRTIKAWSLLDG--------TLSCTMSGHKSA 384 (552)
Q Consensus 321 d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~l~sgs~dg~i~iwd~~~~--------~~~~~~~~h~~~ 384 (552)
+++.-............ ..........|.+ +.+.+++|+.+|.|.--+-... +....+..|.++
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 88743332111111110 1111222334443 5669999999999887332221 223355678899
Q ss_pred eEEEEEe---CCEEEEEeCCCcEEEEECC-CCceeEEEecCCCCceEEEEEEcCCC-CEEEEEECCCcEEEEeCC----c
Q 008820 385 VSTLAVC---NGVLYSGSRDGTIRLWSLS-DHSLLTVLEEDSSGAVSSVLSLTAVQ-HTLVVSHESGSIKVWRND----K 455 (552)
Q Consensus 385 v~~l~~~---~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iwd~~----~ 455 (552)
|+++.++ ...+++++ |.++++|... ...++..+..+. ..+.. ++|||.. ..++++..||.+.+||+. .
T Consensus 401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~-~~v~~-vaWSptrpavF~~~d~~G~l~iWDLl~~~~~ 477 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSP-DYVTD-VAWSPTRPAVFATVDGDGNLDIWDLLQDDEE 477 (555)
T ss_pred eEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhcc-ceeee-eEEcCcCceEEEEEcCCCceehhhhhccccC
Confidence 9999988 34666666 9999999987 556666665442 23444 6899876 467777889999999964 3
Q ss_pred ceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCC
Q 008820 456 FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGD 494 (552)
Q Consensus 456 ~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~ 494 (552)
++.+...+......+.+ +|+.|++|...|++++|++...
T Consensus 478 Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 478 PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred CcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 45555555444455555 6999999999999999999643
|
|
| >KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-16 Score=140.06 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=74.9
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDY 96 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~ 96 (552)
||||++.+. +-.++|||.|||||++ ....++.++|.|||||++|||+.|+ ||-..+..
T Consensus 189 GFAK~v~~r-----T~TlCGTPeYLAPEii---------------~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~~- 247 (355)
T KOG0616|consen 189 GFAKRVSGR-----TWTLCGTPEYLAPEII---------------QSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNPI- 247 (355)
T ss_pred cceEEecCc-----EEEecCCccccChHHh---------------hcCCCCcchhHHHHHHHHHHHHcCCCCCcCCChH-
Confidence 899999988 5679999999999999 2345668999999999999999999 99876644
Q ss_pred hhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcc
Q 008820 97 IRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (552)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~ 154 (552)
.+++++..-....+..-.+.+++++.++|+.|-.+|..
T Consensus 248 --------------------~iY~KI~~~~v~fP~~fs~~~kdLl~~LL~vD~t~R~g 285 (355)
T KOG0616|consen 248 --------------------QIYEKILEGKVKFPSYFSSDAKDLLKKLLQVDLTKRFG 285 (355)
T ss_pred --------------------HHHHHHHhCcccCCcccCHHHHHHHHHHHhhhhHhhhc
Confidence 33344433333333344556999999999999999954
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.6e-14 Score=122.23 Aligned_cols=240 Identities=15% Similarity=0.197 Sum_probs=159.1
Q ss_pred eEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeC-CCEEEEeeCC
Q 008820 283 SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTS-GRYLYTGSGD 361 (552)
Q Consensus 283 ~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~sgs~d 361 (552)
.+...+++|.+.|+++.|-.++ .|.+|..-|.|++|++.+......++.+.. ..+..+..- +..+.+-+.|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~--rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~------~~it~lq~~p~d~l~tqgRd 76 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANE--RLMSGLSVGIVKMWVLQTERDLPLIRLFGR------LFITNLQSIPNDSLDTQGRD 76 (323)
T ss_pred CCeeEeccccchheehhhccch--hhhcccccceEEEEEeecCccchhhhhhcc------ceeeceeecCCcchhhcCCC
Confidence 3556778999999999996544 478999999999999987654444432211 112222221 2567777888
Q ss_pred CcEEEEECCCCceeE-------------------------Ee----------------------------cCCCCCeEEE
Q 008820 362 RTIKAWSLLDGTLSC-------------------------TM----------------------------SGHKSAVSTL 388 (552)
Q Consensus 362 g~i~iwd~~~~~~~~-------------------------~~----------------------------~~h~~~v~~l 388 (552)
+.+.+|++.-+..+. .+ .+..+.+.|.
T Consensus 77 ~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 77 PLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQ 156 (323)
T ss_pred ceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeee
Confidence 888888875421000 00 0122456666
Q ss_pred EEe--C-C--EEEEEeCCCcEEEEECCCCceeEEEec---------CCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 008820 389 AVC--N-G--VLYSGSRDGTIRLWSLSDHSLLTVLEE---------DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND 454 (552)
Q Consensus 389 ~~~--~-~--~l~s~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 454 (552)
.+. . . ++++|.++|.+.+||+.++..+..+.. .+...+.+ +.+.+.-..=++|+.+..+..|++.
T Consensus 157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvls-ldyas~~~rGisgga~dkl~~~Sl~ 235 (323)
T KOG0322|consen 157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLS-LDYASSCDRGISGGADDKLVMYSLN 235 (323)
T ss_pred eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCccee-eeechhhcCCcCCCccccceeeeec
Confidence 654 2 2 678888999999999999854443332 12333443 4555554555677777788888754
Q ss_pred cce--------eeeecccceEEEEEecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEE
Q 008820 455 KFM--------KSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFV 524 (552)
Q Consensus 455 ~~~--------~~~~~h~~~v~~v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s 524 (552)
... ..++...-.-..+.+|++.++|+++|+.||+|+.++......+..+ .+.|++++|+++ .+++
T Consensus 236 ~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH-----sagvn~vAfspd~~lmAa 310 (323)
T KOG0322|consen 236 HSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH-----SAGVNAVAFSPDCELMAA 310 (323)
T ss_pred cccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh-----hcceeEEEeCCCCchhhh
Confidence 221 1222222222345679999999999999999999987666555443 678999999976 4999
Q ss_pred EeCCCeEEEEEe
Q 008820 525 GCADRTVKIALC 536 (552)
Q Consensus 525 ~s~Dg~v~iw~~ 536 (552)
++.|++|.+|++
T Consensus 311 askD~rISLWkL 322 (323)
T KOG0322|consen 311 ASKDARISLWKL 322 (323)
T ss_pred ccCCceEEeeec
Confidence 999999999986
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-12 Score=118.95 Aligned_cols=230 Identities=17% Similarity=0.164 Sum_probs=163.3
Q ss_pred CeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCC--cEEEEECCC
Q 008820 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR--TIKAWSLLD 371 (552)
Q Consensus 294 ~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg--~i~iwd~~~ 371 (552)
.+..+.|.. +..+|..|+.||. ++++.+.-.. ..+.......+...-++..+++..+.+. .+++++++.
T Consensus 7 ti~~~~~Nq-d~~~lsvGs~~Gy-k~~~~~~~~k-------~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 7 TINFIGFNQ-DSTLLSVGSKDGY-KIFSCSPFEK-------CFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred ceeeeeecc-ceeEEEccCCCce-eEEecCchHH-------hhcccCCCeEEEEeecccceeEEEecCCCceEEEEEccc
Confidence 445555654 3446666777664 6666553221 1111112223445555666666655544 489999988
Q ss_pred CceeEEecCCCCCeEEEEEeCCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCC--CCEEEEE--ECCCc
Q 008820 372 GTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAV--QHTLVVS--HESGS 447 (552)
Q Consensus 372 ~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~g--~~dg~ 447 (552)
+..+..+. ...+|.++.++.+.|+++-.+. |+|||+++.+.++++....+.. ..+++++++ +.+++-- ...|.
T Consensus 78 ~~~ICe~~-fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~-~gl~AlS~n~~n~ylAyp~s~t~Gd 154 (391)
T KOG2110|consen 78 KTTICEIF-FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNP-KGLCALSPNNANCYLAYPGSTTSGD 154 (391)
T ss_pred CceEEEEe-cCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCc-cceEeeccCCCCceEEecCCCCCce
Confidence 88887776 5667999999877777776655 9999999999999987653222 223455554 4577753 34689
Q ss_pred EEEEeCCc--ceeeeecccceEEEEEe--cCCEEEEEeCCCe-EEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--
Q 008820 448 IKVWRNDK--FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKT-VSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG-- 520 (552)
Q Consensus 448 i~iwd~~~--~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-- 520 (552)
|.+||..+ +...+..|.+++.+++| +|.+|||+|+.|+ |||+.+.+++....+..... ...|.+++|+++
T Consensus 155 V~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~---~~~IySL~Fs~ds~ 231 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY---PVSIYSLSFSPDSQ 231 (391)
T ss_pred EEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce---eeEEEEEEECCCCC
Confidence 99999654 67788899999999987 9999999999997 69999999988877766433 556999999964
Q ss_pred eEEEEeCCCeEEEEEecC
Q 008820 521 KLFVGCADRTVKIALCNR 538 (552)
Q Consensus 521 ~l~s~s~Dg~v~iw~~~~ 538 (552)
.|.+.|..++|+||+++.
T Consensus 232 ~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 232 FLAASSNTETVHIFKLEK 249 (391)
T ss_pred eEEEecCCCeEEEEEecc
Confidence 477788899999999974
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.4e-13 Score=119.40 Aligned_cols=231 Identities=18% Similarity=0.196 Sum_probs=165.0
Q ss_pred eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCC---eEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q 008820 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF---SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (552)
Q Consensus 248 l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~---~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 322 (552)
+.--..+|+|.+|+ ...+|.+.....|.||..... +..++++.|...|+.|.|.|..+ .+++|+.|..-++|..
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYVWTQ 84 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC-ceeEccCCCCcccccc
Confidence 33445799999999 788999999999999987654 56889999999999999999665 5699999999999998
Q ss_pred CCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeE----EecCCCCCeEEEEEe-CC-EEE
Q 008820 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSC----TMSGHKSAVSTLAVC-NG-VLY 396 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~----~~~~h~~~v~~l~~~-~~-~l~ 396 (552)
..+..-++...+.... .......++|.++.|++|+.-..|.+|-++..+--. .-+.+.+.|+++.|+ ++ +++
T Consensus 85 ~~~~~WkptlvLlRiN--rAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla 162 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRIN--RAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA 162 (361)
T ss_pred CCCCeeccceeEEEec--cceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence 5444333333222222 122345778889999999999999999886554322 224577889999999 55 889
Q ss_pred EEeCCCcEEEEECCC------------------CceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcc--
Q 008820 397 SGSRDGTIRLWSLSD------------------HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF-- 456 (552)
Q Consensus 397 s~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-- 456 (552)
+|+.|+..|+|...- |+.+..+. ...+.+.. +.|+|+|+.|+-.+.|+.+.+-|...+
T Consensus 163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~-v~fs~sG~~lawv~Hds~v~~~da~~p~~ 240 (361)
T KOG1523|consen 163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHG-VLFSPSGNRLAWVGHDSTVSFVDAAGPSE 240 (361)
T ss_pred ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceee-eEeCCCCCEeeEecCCCceEEeecCCCch
Confidence 999999999997521 12222332 22344444 699999999999999999999985433
Q ss_pred -eeeeecccceEEEEEe-cCCEEEEEeCC
Q 008820 457 -MKSMQTHKGSVFAVFL-EGKWLFTGGWD 483 (552)
Q Consensus 457 -~~~~~~h~~~v~~v~~-~~~~l~sgs~d 483 (552)
........-+..++.| +...++.++.|
T Consensus 241 ~v~~~~~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 241 RVQSVATAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred hccchhhccCCceeeEeecCCceeecCCC
Confidence 3333333356666666 55555555554
|
|
| >KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.1e-16 Score=143.43 Aligned_cols=114 Identities=19% Similarity=0.217 Sum_probs=81.6
Q ss_pred hhhhhhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh
Q 008820 8 RVTKSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI 85 (552)
Q Consensus 8 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt 85 (552)
.++--+.|+. |||+.+...+ ....++|||-|||||++ ...+|+.|+|+||+|++||++++
T Consensus 148 ~~~~~~LKIADFGfAR~L~~~~---~a~tlcGSplYMAPEV~---------------~~~~YdAKADLWSiG~Ilyq~l~ 209 (429)
T KOG0595|consen 148 NDTSPVLKIADFGFARFLQPGS---MAETLCGSPLYMAPEVI---------------MSQQYDAKADLWSIGTILYQCLT 209 (429)
T ss_pred CCCCceEEecccchhhhCCchh---HHHHhhCCccccCHHHH---------------HhccccchhhHHHHHHHHHHHHh
Confidence 3333677887 8998888775 48999999999999999 45788999999999999999999
Q ss_pred CC-CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhh
Q 008820 86 GE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTN 157 (552)
Q Consensus 86 g~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~ 157 (552)
|+ ||+..+...|. .-++.-...++..+ .....++.+++...|+.+|.+|....+
T Consensus 210 g~~Pf~a~t~~eL~--------------~~~~k~~~~~~~~~----~~~s~~~~~Ll~~ll~~~~~~~~~~~~ 264 (429)
T KOG0595|consen 210 GKPPFDAETPKELL--------------LYIKKGNEIVPVLP----AELSNPLRELLISLLQRNPKDRISFED 264 (429)
T ss_pred CCCCccccCHHHHH--------------HHHhccccccCchh----hhccCchhhhhhHHHhcCccccCchHH
Confidence 99 99988777442 00000001111111 112334678888899999999876443
|
|
| >KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-15 Score=144.60 Aligned_cols=120 Identities=19% Similarity=0.329 Sum_probs=78.7
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHH-h-
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKEL-I- 94 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~-~- 94 (552)
|.|+.|.....-..--..+||+.|||||.+-..-.+ .+....+-+++.+|||||||||||+|+.|+ ||...- .
T Consensus 504 GIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~----~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~~ 579 (677)
T KOG0596|consen 504 GIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSS----RENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIINQI 579 (677)
T ss_pred chhcccCccccceeeccccCcccccCHHHHhhcccc----ccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHHHH
Confidence 778888888765566678999999999998442221 122223456889999999999999999999 996521 1
Q ss_pred hhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 95 DYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..|..+...... -+.++.+. .-++.++...||+.||.+||+..++.+
T Consensus 580 aKl~aI~~P~~~-------------Iefp~~~~------~~~li~~mK~CL~rdPkkR~si~eLLq 626 (677)
T KOG0596|consen 580 AKLHAITDPNHE-------------IEFPDIPE------NDELIDVMKCCLARDPKKRWSIPELLQ 626 (677)
T ss_pred HHHHhhcCCCcc-------------ccccCCCC------chHHHHHHHHHHhcCcccCCCcHHHhc
Confidence 111111110000 00011111 112788999999999999999887655
|
|
| >smart00750 KIND kinase non-catalytic C-lobe domain | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-15 Score=132.38 Aligned_cols=99 Identities=17% Similarity=0.138 Sum_probs=65.3
Q ss_pred cccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhhhhh
Q 008820 36 LESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIACLGM 114 (552)
Q Consensus 36 ~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (552)
.||+.|||||++ . ...+++++|||||||+||||+||+ ||........ .
T Consensus 65 ~g~~~y~aPE~~------~---------~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~----------------~ 113 (176)
T smart00750 65 RVDPYFMAPEVI------Q---------GQSYTEKADIYSLGITLYEALDYELPYNEERELSA----------------I 113 (176)
T ss_pred CCcccccChHHh------c---------CCCCcchhhHHHHHHHHHHHHhCCCCccccchhcH----------------H
Confidence 699999999999 2 355678999999999999999999 9965321100 0
Q ss_pred hHHHHHHHHHH-Hh--hhhcCcc--ccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 115 YMAWMEKVTYL-LE--NKFGSEF--VSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 115 ~~~~~~~~~~~-~~--~~~~~~~--~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
...+....... +. ....... .++.+++.+||..+|.+||++.++.+.....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~ 169 (176)
T smart00750 114 LEILLNGMPADDPRDRSNLESVSAARSFADFMRVCASRLPQRREAANHYLAHCRAL 169 (176)
T ss_pred HHHHHHHhccCCccccccHHHHHhhhhHHHHHHHHHhcccccccCHHHHHHHHHHH
Confidence 00000000000 00 0000011 2488999999999999999999888876544
|
It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features |
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.1e-14 Score=134.89 Aligned_cols=236 Identities=14% Similarity=0.152 Sum_probs=159.7
Q ss_pred EEEcCCEEEE--EeCCCcEEEEeCCCC-eEEE-EEe--CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccc
Q 008820 258 LAVGGGFLFS--SSFDKSIHVWSLKDF-SHVH-TFK--GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPL 331 (552)
Q Consensus 258 l~~s~~~l~s--~s~dg~I~iwd~~~~-~~~~-~~~--~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 331 (552)
++.+..+++. ++.-|.|-||+++.. +... .+. .....|+++.|.|-+...|+.++.||.|++|.+..+......
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~ 666 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE 666 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence 3333445544 455789999998753 2211 111 145679999999988889999999999999999876554443
Q ss_pred cccccCCCceeeeEEE--Eee-CCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeCCCcEEE
Q 008820 332 KKWNEEKDWRYSGIHA--LTT-SGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRL 406 (552)
Q Consensus 332 ~~~~~~~~~~~~~~~~--~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i~i 406 (552)
......-..+...+.+ |+| ..+.|++++.|.+|++||+.+++....+.+|.+.|..++|+ ++ .+++.+.||+|++
T Consensus 667 ~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rV 746 (1012)
T KOG1445|consen 667 MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRV 746 (1012)
T ss_pred CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEE
Confidence 3332222222223333 344 34589999999999999999999999999999999999999 44 9999999999999
Q ss_pred EECCCCce-eEEEecCCCCceEEEEEEcCCCCEEEEEECC----CcEEEEeCCcc----eeeeecccc---eEEEEEec-
Q 008820 407 WSLSDHSL-LTVLEEDSSGAVSSVLSLTAVQHTLVVSHES----GSIKVWRNDKF----MKSMQTHKG---SVFAVFLE- 473 (552)
Q Consensus 407 wd~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d----g~i~iwd~~~~----~~~~~~h~~---~v~~v~~~- 473 (552)
|+.++++. ++.-.+.. +.....+.|..+|+++++.+.| ..|.+||..+. +.+..-... -|....+|
T Consensus 747 y~Prs~e~pv~Eg~gpv-gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds 825 (1012)
T KOG1445|consen 747 YEPRSREQPVYEGKGPV-GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDS 825 (1012)
T ss_pred eCCCCCCCccccCCCCc-cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCC
Confidence 99988753 33333332 2222335777889988877655 46788885432 222111111 11122233
Q ss_pred CCEEEEEeCCCeEEEEecCCC
Q 008820 474 GKWLFTGGWDKTVSVQELAGD 494 (552)
Q Consensus 474 ~~~l~sgs~dg~i~iwd~~~~ 494 (552)
+-.+++|-.|..|.+|.+-..
T Consensus 826 ~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 826 NVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred ceEEEecCCCceEEEEEecCC
Confidence 456778888999999998643
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.3e-14 Score=134.09 Aligned_cols=163 Identities=23% Similarity=0.392 Sum_probs=121.5
Q ss_pred EEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEE-eCCCCCeEEEEEecC-CCCEEEEEcCCCcEEEEe
Q 008820 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF-KGHDHKVMAVVYVDE-DQPLCISGDSGGGIFVWS 321 (552)
Q Consensus 246 ~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~-~~~~l~s~~~dg~i~vwd 321 (552)
..|.||++.|+|++|+ |.+|++||.|-.+.|||.-..+.++.+ .+|...|.++.|.|. ++.++++|..|..|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 3589999999999999 999999999999999999988888877 579999999999985 456789999999999999
Q ss_pred CCCCCCC-------ccccccccCCCceeeeEEEEeeCC-CEEEEeeCCCcEEEEECCCCce-eE---------EecCCCC
Q 008820 322 FSFPLGH-------EPLKKWNEEKDWRYSGIHALTTSG-RYLYTGSGDRTIKAWSLLDGTL-SC---------TMSGHKS 383 (552)
Q Consensus 322 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sgs~dg~i~iwd~~~~~~-~~---------~~~~h~~ 383 (552)
+...+.. .....+..+.. .... .+..|++ +.+.++++||+|+-+|++.... .. .+...--
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~-rVKr-ia~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTD-RVKR-IATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred cccccccccccCccchhhhhhhhhh-hhhh-eecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9853321 12222222222 1111 2344554 6999999999999999985311 11 1111223
Q ss_pred CeEEEEEe---CCEEEEEeCCCcEEEEECC
Q 008820 384 AVSTLAVC---NGVLYSGSRDGTIRLWSLS 410 (552)
Q Consensus 384 ~v~~l~~~---~~~l~s~~~dg~i~iwd~~ 410 (552)
...|+..+ +.+|++|+.|-..++||.+
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 45677777 4499999999999999954
|
|
| >KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-15 Score=145.93 Aligned_cols=90 Identities=23% Similarity=0.365 Sum_probs=65.3
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.-.++|||.|||||++ .| ..++..||.||||||+||||+|. ||.++++. +
T Consensus 345 a~StVGTPDYiAPEVl------l~---------kgY~~~cDwWSLG~ImyEmLvGyPPF~s~tp~--------------~ 395 (550)
T KOG0605|consen 345 AYSTVGTPDYIAPEVL------LG---------KGYGKECDWWSLGCIMYEMLVGYPPFCSETPQ--------------E 395 (550)
T ss_pred hhcccCCccccchHHH------hc---------CCCCccccHHHHHHHHHHHHhCCCCCCCCCHH--------------H
Confidence 4458999999999999 33 44678999999999999999999 99887766 1
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcc
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~ 154 (552)
.|.....|+..... |. ......+..++|.+||. +|++|-.
T Consensus 396 T~rkI~nwr~~l~f-P~--~~~~s~eA~DLI~rll~-d~~~RLG 435 (550)
T KOG0605|consen 396 TYRKIVNWRETLKF-PE--EVDLSDEAKDLITRLLC-DPENRLG 435 (550)
T ss_pred HHHHHHHHhhhccC-CC--cCcccHHHHHHHHHHhc-CHHHhcC
Confidence 22222333332211 11 11233568999999999 9999987
|
|
| >KOG0589 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-15 Score=146.14 Aligned_cols=110 Identities=15% Similarity=0.243 Sum_probs=85.9
Q ss_pred hcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchH
Q 008820 15 KVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTK 91 (552)
Q Consensus 15 ~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~ 91 (552)
|.| |+||.++..+. +.+.++|||.||.||++ +| -.+++|||||||||++|||++=+ +|.+
T Consensus 146 kLgDfGlaK~l~~~~~--~a~tvvGTp~YmcPEil------~d---------~pYn~KSDiWsLGC~~yEm~~lk~aF~a 208 (426)
T KOG0589|consen 146 KLGDFGLAKILNPEDS--LASTVVGTPYYMCPEIL------SD---------IPYNEKSDIWSLGCCLYEMCTLKPAFKA 208 (426)
T ss_pred eecchhhhhhcCCchh--hhheecCCCcccCHHHh------CC---------CCCCccCcchhhcchHHHHHhcccccCc
Confidence 888 99999999874 48999999999999999 44 66789999999999999999999 9998
Q ss_pred HHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 92 ELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
.+...|. ....... ..+.......++..++..||.++|+.||++.++.+.
T Consensus 209 ~~m~~Li----------------~ki~~~~----~~Plp~~ys~el~~lv~~~l~~~P~~RPsa~~LL~~ 258 (426)
T KOG0589|consen 209 SNMSELI----------------LKINRGL----YSPLPSMYSSELRSLVKSMLRKNPEHRPSALELLRR 258 (426)
T ss_pred cchHHHH----------------HHHhhcc----CCCCCccccHHHHHHHHHHhhcCCccCCCHHHHhhC
Confidence 7766432 0111111 111222345569999999999999999999887765
|
|
| >KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-15 Score=149.81 Aligned_cols=100 Identities=19% Similarity=0.181 Sum_probs=72.4
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDY 96 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~ 96 (552)
|++|.--..... +++|+|||.|||||++ ....|+..+|.|||||+|||||+|. ||.+++-..
T Consensus 513 GlcKe~m~~g~~--TsTfCGTpey~aPEil---------------~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee 575 (694)
T KOG0694|consen 513 GLCKEGMGQGDR--TSTFCGTPEFLAPEVL---------------TEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEEE 575 (694)
T ss_pred ccccccCCCCCc--cccccCChhhcChhhh---------------ccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHHH
Confidence 667554322222 8999999999999999 3477889999999999999999999 998866553
Q ss_pred hhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcch
Q 008820 97 IRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (552)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~ 155 (552)
+ .+.+.......+.....+...++.++|.++|++|-.+
T Consensus 576 ~---------------------FdsI~~d~~~yP~~ls~ea~~il~~ll~k~p~kRLG~ 613 (694)
T KOG0694|consen 576 V---------------------FDSIVNDEVRYPRFLSKEAIAIMRRLLRKNPEKRLGS 613 (694)
T ss_pred H---------------------HHHHhcCCCCCCCcccHHHHHHHHHHhccCcccccCC
Confidence 3 1111111111222234457789999999999999876
|
|
| >KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-15 Score=133.73 Aligned_cols=120 Identities=16% Similarity=0.178 Sum_probs=89.7
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p 88 (552)
.=-|++ |||+++.+.+. +.+++|||+|+|||.+.=.++. ....++...|.||+||++|.||.|- |
T Consensus 160 ~~i~isDFGFa~~l~~Gek---LrelCGTPgYLAPEtikC~m~e---------~~pGYs~EVD~Wa~GVImyTLLaGcpP 227 (411)
T KOG0599|consen 160 MNIKISDFGFACQLEPGEK---LRELCGTPGYLAPETIKCSMYE---------NHPGYSKEVDEWACGVIMYTLLAGCPP 227 (411)
T ss_pred cceEEeccceeeccCCchh---HHHhcCCCcccChhheeeeccc---------CCCCccchhhHHHHHHHHHHHHcCCCc
Confidence 334555 99999999987 8999999999999999433332 2344567899999999999999999 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
|-..-.. .+.+.+.+...+...+.+.....+.++++.+||+.||.+|.++.+...
T Consensus 228 FwHRkQm-----------------lMLR~ImeGkyqF~speWadis~~~KdLIsrlLqVdp~~Ritake~La 282 (411)
T KOG0599|consen 228 FWHRKQM-----------------LMLRMIMEGKYQFRSPEWADISATVKDLISRLLQVDPTKRITAKEALA 282 (411)
T ss_pred hhHHHHH-----------------HHHHHHHhcccccCCcchhhccccHHHHHHHHHeeCchhcccHHHHhc
Confidence 9653222 123334444444555566666777999999999999999999876544
|
|
| >KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-15 Score=145.12 Aligned_cols=103 Identities=19% Similarity=0.305 Sum_probs=75.2
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDY 96 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~ 96 (552)
|||+.+.... ...++++|||-|||||.. +| ..++..+|+|||||+||||.+|+ ||-.....+
T Consensus 145 g~Ar~m~~~t--~vltsikGtPlYmAPElv------~e---------~pyd~~sDlWslGcilYE~~~G~PPF~a~si~~ 207 (808)
T KOG0597|consen 145 GLARAMSTNT--SVLTSIKGTPLYMAPELV------EE---------QPYDHTSDLWSLGCILYELYVGQPPFYARSITQ 207 (808)
T ss_pred hhhhhcccCc--eeeeeccCcccccCHHHH------cC---------CCccchhhHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 6777766654 579999999999999999 33 56778999999999999999999 998877664
Q ss_pred hhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhH
Q 008820 97 IRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNV 158 (552)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~ 158 (552)
|. +.+...+...+......+..++..+|.+||.+|.+-.++
T Consensus 208 Lv---------------------~~I~~d~v~~p~~~S~~f~nfl~gLL~kdP~~RltW~~L 248 (808)
T KOG0597|consen 208 LV---------------------KSILKDPVKPPSTASSSFVNFLQGLLIKDPAQRLTWTDL 248 (808)
T ss_pred HH---------------------HHHhcCCCCCcccccHHHHHHHHHHhhcChhhcccHHHH
Confidence 42 111111111111233348888999999999999886543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-11 Score=122.09 Aligned_cols=280 Identities=13% Similarity=0.110 Sum_probs=179.7
Q ss_pred CCeEEEEEeecCccceEEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEE
Q 008820 240 KGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFV 319 (552)
Q Consensus 240 ~~~~~~~~l~~H~~~V~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~v 319 (552)
.....+|.+.-...........++.++.++.|+.+..+|..+|+.+....... .+.+.-... ++ .++.++.+|.+..
T Consensus 83 ~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v~-~~-~v~v~~~~g~l~a 159 (377)
T TIGR03300 83 ETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLVA-NG-LVVVRTNDGRLTA 159 (377)
T ss_pred cCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEEE-CC-EEEEECCCCeEEE
Confidence 33445676655544334455568888999999999999999999988765432 222211111 23 5667788999999
Q ss_pred EeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCC-----------CeEEE
Q 008820 320 WSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKS-----------AVSTL 388 (552)
Q Consensus 320 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~-----------~v~~l 388 (552)
||.++++............. ..........+..++.+..+|.+..+|.++|+.+........ ...+.
T Consensus 160 ~d~~tG~~~W~~~~~~~~~~--~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p 237 (377)
T TIGR03300 160 LDAATGERLWTYSRVTPALT--LRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDP 237 (377)
T ss_pred EEcCCCceeeEEccCCCcee--ecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCcc
Confidence 99988765444332111100 000000011234678888899999999999988775431110 01122
Q ss_pred EEeCCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeeecc-cc
Q 008820 389 AVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTH-KG 465 (552)
Q Consensus 389 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~h-~~ 465 (552)
.+.++.++.++.+|.++.||..+++.+....... .. .....+..+++++.+|.++.+|..+ .+...... ..
T Consensus 238 ~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~---~~---~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~ 311 (377)
T TIGR03300 238 VVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS---YQ---GPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYR 311 (377)
T ss_pred EEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC---cc---CceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCC
Confidence 3447789999999999999999999887665321 11 1223467888888999999999653 33222111 11
Q ss_pred eEEEEEecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEE
Q 008820 466 SVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIA 534 (552)
Q Consensus 466 ~v~~v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw 534 (552)
...+....+..+++++.+|.|+++|..+++......... .....+..+.++.|+.++.||.|+.|
T Consensus 312 ~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~----~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 312 QLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDG----SGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred ccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC----CccccCCEEECCEEEEEeCCceEEEe
Confidence 122223367899999999999999999888877655432 11233445567889999999999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-11 Score=121.23 Aligned_cols=275 Identities=13% Similarity=0.021 Sum_probs=180.5
Q ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccC
Q 008820 258 LAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEE 337 (552)
Q Consensus 258 l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 337 (552)
....++.++.++.+|.|..+|..+|+.+............... ++ ..++.++.++.+..+|..+++..........
T Consensus 61 p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~- 136 (377)
T TIGR03300 61 PAVAGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DG-GLVFVGTEKGEVIALDAEDGKELWRAKLSSE- 136 (377)
T ss_pred eEEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cC-CEEEEEcCCCEEEEEECCCCcEeeeeccCce-
Confidence 3445889999999999999999999999887654432223332 23 3567888899999999987765443322110
Q ss_pred CCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCe-----EEEEEeCCEEEEEeCCCcEEEEECCCC
Q 008820 338 KDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAV-----STLAVCNGVLYSGSRDGTIRLWSLSDH 412 (552)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v-----~~l~~~~~~l~s~~~dg~i~iwd~~~~ 412 (552)
.. ......++.++.++.+|.++.||.++|+.+..+....... .+....++.++.+..++.+..+|.++|
T Consensus 137 ---~~---~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG 210 (377)
T TIGR03300 137 ---VL---SPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTG 210 (377)
T ss_pred ---ee---cCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCC
Confidence 00 0111235577778889999999999999988876433221 122334678888999999999999999
Q ss_pred ceeEEEecCCCCc---------eEEEEEEcCCCCEEEEEECCCcEEEEeCCcceeeeecccceEEEEEecCCEEEEEeCC
Q 008820 413 SLLTVLEEDSSGA---------VSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWD 483 (552)
Q Consensus 413 ~~~~~~~~~~~~~---------~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~h~~~v~~v~~~~~~l~sgs~d 483 (552)
+.+.......... ......+ .+..+++++.+|.++.||..+....+............++..++.++.|
T Consensus 211 ~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~ 288 (377)
T TIGR03300 211 QPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDAD 288 (377)
T ss_pred CEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCC
Confidence 8876654321100 0000011 3567888889999999996543332222112222333477888888999
Q ss_pred CeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEecCCcceeEEEecc
Q 008820 484 KTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCNRQIPEIFSLLLH 549 (552)
Q Consensus 484 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~~~~~~~~~~~gh 549 (552)
|.++.+|..+++......... .....+....++.+++++.||.|+++|.. +++.+.++..+
T Consensus 289 G~l~~~d~~tG~~~W~~~~~~----~~~~ssp~i~g~~l~~~~~~G~l~~~d~~-tG~~~~~~~~~ 349 (377)
T TIGR03300 289 GVVVALDRRSGSELWKNDELK----YRQLTAPAVVGGYLVVGDFEGYLHWLSRE-DGSFVARLKTD 349 (377)
T ss_pred CeEEEEECCCCcEEEcccccc----CCccccCEEECCEEEEEeCCCEEEEEECC-CCCEEEEEEcC
Confidence 999999999887765542211 11223334457889999999999999976 56666666543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-13 Score=119.04 Aligned_cols=188 Identities=12% Similarity=0.190 Sum_probs=139.0
Q ss_pred cCccceEEEEEc---CCEEEEEeCCCcEEEEeCCCCeE---EEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC
Q 008820 250 GHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFSH---VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (552)
Q Consensus 250 ~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~~~~---~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (552)
.|..++++..|+ .+++.++|-|-+..|||++++.. ...+-.|..+|.+++|...+..++++.+.||.+|++|++
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 466799999999 89999999999999999998633 455678999999999999888999999999999999998
Q ss_pred CCCCCccccccccCCCceeeeEEEEeeC---CCEEEEeeC-CCcEEEEECCC-CceeEEecCCCCCeEEEEEe---CCEE
Q 008820 324 FPLGHEPLKKWNEEKDWRYSGIHALTTS---GRYLYTGSG-DRTIKAWSLLD-GTLSCTMSGHKSAVSTLAVC---NGVL 395 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~sgs~-dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~---~~~l 395 (552)
.......+..-... ..++..++++ .+++++-.. ...|.+.|++. ..++..+++|.+.|+.++|. ...|
T Consensus 228 ~leHSTIIYE~p~~----~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hi 303 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSP----STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHI 303 (364)
T ss_pred ccccceEEecCCCC----CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCcee
Confidence 65433333322221 2234444443 456666443 46799999985 46788999999999999998 3499
Q ss_pred EEEeCCCcEEEEECCCCc------eeEEEecCCCCceEEEEEEc-CCCCEEEEEEC
Q 008820 396 YSGSRDGTIRLWSLSDHS------LLTVLEEDSSGAVSSVLSLT-AVQHTLVVSHE 444 (552)
Q Consensus 396 ~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~s-~~~~~l~~g~~ 444 (552)
.+++.|..+.+||+.+.- ++..+.. .+.+.. +.|+ ..+..++.+..
T Consensus 304 ctaGDD~qaliWDl~q~~~~~~~dPilay~a--~~EVNq-i~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 304 CTAGDDCQALIWDLQQMPRENGEDPILAYTA--GGEVNQ-IQWSSSQPDWIAICFG 356 (364)
T ss_pred eecCCcceEEEEecccccccCCCCchhhhhc--cceeee-eeecccCCCEEEEEec
Confidence 999999999999997532 2222222 233444 4666 44567776654
|
|
| >KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.5e-15 Score=144.42 Aligned_cols=104 Identities=23% Similarity=0.308 Sum_probs=76.4
Q ss_pred ccccccc-ccchhhhhhhccccccccchHHHHHHhhccCceeecccccc-cccccccccchhhhhhhhhhCC-CchHHHh
Q 008820 18 CVGSRIC-DKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEF-SVGYGSDVWPVACILLSLLIGE-QFTKELI 94 (552)
Q Consensus 18 ~~~~~~~-~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~-~~~~~sDv~SlG~~l~~lltg~-pf~~~~~ 94 (552)
|+|.... +.+ .+++++|||+|+|||++ .| .. ..+.++|||||||+||.|++|+ ||+..+.
T Consensus 166 G~s~~~~~~~~---~l~t~cGsp~Y~aPEvl------~~--------~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~ 228 (370)
T KOG0583|consen 166 GLSAISPGEDG---LLKTFCGSPAYAAPEVL------SG--------KGTYSGKAADVWSLGVILYVLLCGRLPFDDSNV 228 (370)
T ss_pred ccccccCCCCC---cccCCCCCcccCCHHHh------CC--------CCCcCCchhhhhhhHHHHHHHHhCCCCCCCccH
Confidence 7776663 333 58999999999999999 33 22 2358999999999999999999 9988665
Q ss_pred hhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCc-cccHHHHHHhhcccCCCCCcchhhHH
Q 008820 95 DYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSE-FVSLQLMFCQCLNFDPGCRPLLTNVW 159 (552)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~l~~~p~~R~~~~~~~ 159 (552)
..+ +..+.......|. .. .+++..++.+||..+|.+|++..++.
T Consensus 229 ~~l-----------------~~ki~~~~~~~p~----~~~S~~~~~Li~~mL~~~P~~R~t~~~i~ 273 (370)
T KOG0583|consen 229 PNL-----------------YRKIRKGEFKIPS----YLLSPEARSLIEKMLVPDPSTRITLLEIL 273 (370)
T ss_pred HHH-----------------HHHHhcCCccCCC----CcCCHHHHHHHHHHcCCCcccCCCHHHHh
Confidence 522 1222221122221 12 56799999999999999999998877
|
|
| >KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-15 Score=139.76 Aligned_cols=116 Identities=16% Similarity=0.240 Sum_probs=75.5
Q ss_pred hhhcc--cccccccc-cchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C
Q 008820 13 VAKVG--CVGSRICD-KEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~-~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p 88 (552)
.+|+. |++++... .........+.|||.|||||++.. | ...++++|||||||+++||+||+ |
T Consensus 156 ~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEvi~~-----g---------~~~~~~sDiWSlGCtVvEM~Tg~~P 221 (313)
T KOG0198|consen 156 DVKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEVIRN-----G---------EVARRESDIWSLGCTVVEMLTGKPP 221 (313)
T ss_pred eEEeccCccccccccccccccccccccCCccccCchhhcC-----C---------CcCCccchhhhcCCEEEeccCCCCc
Confidence 55665 55666663 111123667999999999999921 1 22336999999999999999999 9
Q ss_pred chHH-HhhhhhhccccCCCchhhhhhhhHHHHHH-HHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHH
Q 008820 89 FTKE-LIDYIRCVSTKASDDNIACLGMYMAWMEK-VTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (552)
Q Consensus 89 f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l 162 (552)
|... .... ......... .| ..+.....+.++++.+||.++|.+||++.+++...
T Consensus 222 W~~~~~~~~----------------~~~~ig~~~~~P----~ip~~ls~~a~~Fl~~C~~~~p~~Rpta~eLL~hp 277 (313)
T KOG0198|consen 222 WSEFFEEAE----------------ALLLIGREDSLP----EIPDSLSDEAKDFLRKCFKRDPEKRPTAEELLEHP 277 (313)
T ss_pred chhhcchHH----------------HHHHHhccCCCC----CCCcccCHHHHHHHHHHhhcCcccCcCHHHHhhCh
Confidence 9762 1110 000111111 11 11122444689999999999999999999877753
|
|
| >KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-15 Score=139.89 Aligned_cols=106 Identities=17% Similarity=0.289 Sum_probs=75.0
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDY 96 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~ 96 (552)
||+-.+..... ...+|+|||-|||||++ . ...++.|+||||||++.|||++|. |+..-...+
T Consensus 156 gVa~ql~~~~~--rr~tfvGTPfwMAPEVI------~---------~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmr 218 (467)
T KOG0201|consen 156 GVAGQLTNTVK--RRKTFVGTPFWMAPEVI------K---------QSGYDTKADIWSLGITAIELAKGEPPHSKLHPMR 218 (467)
T ss_pred ceeeeeechhh--ccccccccccccchhhh------c---------cccccchhhhhhhhHHHHHHhcCCCCCcccCcce
Confidence 66655554433 24789999999999999 2 245779999999999999999999 986644432
Q ss_pred hhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhc-CccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 97 IRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-SEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
..++=.++ ..+..+ ...+.+++++..||.++|+.||++.++.+.
T Consensus 219 vlflIpk~---------------------~PP~L~~~~S~~~kEFV~~CL~k~P~~RpsA~~LLKh 263 (467)
T KOG0201|consen 219 VLFLIPKS---------------------APPRLDGDFSPPFKEFVEACLDKNPEFRPSAKELLKH 263 (467)
T ss_pred EEEeccCC---------------------CCCccccccCHHHHHHHHHHhhcCcccCcCHHHHhhh
Confidence 21100111 111122 234459999999999999999999887664
|
|
| >KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-15 Score=144.66 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=79.8
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
-|++ ||+..+..... --+.++|||.|||||++ .+..+++|.||||||+|+.||+-|+ ||.
T Consensus 408 vKltDFGFcaqi~~~~~--KR~TmVGTPYWMAPEVv---------------trk~YG~KVDIWSLGIMaIEMveGEPPYl 470 (550)
T KOG0578|consen 408 VKLTDFGFCAQISEEQS--KRSTMVGTPYWMAPEVV---------------TRKPYGPKVDIWSLGIMAIEMVEGEPPYL 470 (550)
T ss_pred EEEeeeeeeeccccccC--ccccccCCCCccchhhh---------------hhcccCccccchhhhhHHHHHhcCCCCcc
Confidence 3566 77777666543 37899999999999999 3456789999999999999999999 996
Q ss_pred HHHhh-hh--hhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 91 KELID-YI--RCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 91 ~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
.++.. +| +..++. + .........+++++++.+||+.||++|+++.++.+.
T Consensus 471 nE~PlrAlyLIa~ng~-------------------P--~lk~~~klS~~~kdFL~~cL~~dv~~RasA~eLL~H 523 (550)
T KOG0578|consen 471 NENPLRALYLIATNGT-------------------P--KLKNPEKLSPELKDFLDRCLVVDVEQRASAKELLEH 523 (550)
T ss_pred CCChHHHHHHHhhcCC-------------------C--CcCCccccCHHHHHHHHHHhhcchhcCCCHHHHhcC
Confidence 54322 11 111110 0 111222345569999999999999999999887663
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-12 Score=120.15 Aligned_cols=233 Identities=13% Similarity=0.221 Sum_probs=146.5
Q ss_pred CCccccceeeecCcc-eEEEeeCCCeEEEEE------------------eecCccceEEEEEc--CCEEEEEeCCCcEEE
Q 008820 218 DGADIDQARAAGGVK-DLVNGLSKGNVKFKD------------------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHV 276 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~i 276 (552)
+..++.++.+..... .++++..+..+++|. |..|..+|+++.|+ |+.|+||+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 334455555555444 666666666666665 56799999999999 889999999999999
Q ss_pred EeCC--------C--------CeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcccccccc----
Q 008820 277 WSLK--------D--------FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNE---- 336 (552)
Q Consensus 277 wd~~--------~--------~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---- 336 (552)
|... + ....+.+.+|...|..++|+|++. ++++++.|..+++||+..+...........
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG 170 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccceeEeeccccccccce
Confidence 9765 2 234566788999999999999665 779999999999999986542211111000
Q ss_pred ---------------CC-C--------c--eeee------------------------------EEEEeeCCCEEEEeeC
Q 008820 337 ---------------EK-D--------W--RYSG------------------------------IHALTTSGRYLYTGSG 360 (552)
Q Consensus 337 ---------------~~-~--------~--~~~~------------------------------~~~~~~~~~~l~sgs~ 360 (552)
.. . . .... -.+|+|+|..+++.+.
T Consensus 171 vawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 171 VAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred eecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence 00 0 0 0000 0155666666665432
Q ss_pred ----CC-----cEEEEECC-CCceeEEecCCCCCeEEEEEe-------------------CCEEEEEeCCCcEEEEECCC
Q 008820 361 ----DR-----TIKAWSLL-DGTLSCTMSGHKSAVSTLAVC-------------------NGVLYSGSRDGTIRLWSLSD 411 (552)
Q Consensus 361 ----dg-----~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~-------------------~~~l~s~~~dg~i~iwd~~~ 411 (552)
.+ ..++++-. ..++...+.+...++..+.++ -.+++.......+.+||.++
T Consensus 251 ~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~ 330 (434)
T KOG1009|consen 251 LFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQT 330 (434)
T ss_pred eeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecccc
Confidence 11 12333321 113333444444444444432 01233334456788999888
Q ss_pred CceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEe
Q 008820 412 HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR 452 (552)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 452 (552)
..++.....-|-..++. ++|+++|..++..+.||.+.+..
T Consensus 331 ~~P~~~v~nihy~~iTD-iaws~dg~~l~vSS~DGyCS~vt 370 (434)
T KOG1009|consen 331 LEPLAVVDNIHYSAITD-IAWSDDGSVLLVSSTDGFCSLVT 370 (434)
T ss_pred ccceEEEeeeeeeeecc-eeecCCCcEEEEeccCCceEEEE
Confidence 87777776655555555 58899999999999998877654
|
|
| >KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-14 Score=140.68 Aligned_cols=119 Identities=17% Similarity=0.206 Sum_probs=82.6
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+++....... .++...||+.|||||++.+. ...++.|+||||||++|+||+||+ ||
T Consensus 182 ~~KI~DFGlsr~~~~~~~--~~~~~~GT~~wMAPEv~~~~-------------~~~~~~K~DvySFgIvlWEl~t~~~Pf 246 (362)
T KOG0192|consen 182 TLKIADFGLSREKVISKT--SMTSVAGTYRWMAPEVLRGE-------------KSPYTEKSDVYSFGIVLWELLTGEIPF 246 (362)
T ss_pred EEEECCCccceeeccccc--cccCCCCCccccChhhhcCC-------------CCcCCccchhhhHHHHHHHHHHCCCCC
Confidence 67787 55644444322 26679999999999999211 356889999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHH-HHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWM-EKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
......+++ ..... ...+.++. .....+..++.+|...+|.+||+..++...+..+.
T Consensus 247 ~~~~~~~~~----------------~~v~~~~~Rp~~p~----~~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~ 304 (362)
T KOG0192|consen 247 EDLAPVQVA----------------SAVVVGGLRPPIPK----ECPPHLSSLMERCWLVDPSRRPSFLEIVSRLESIM 304 (362)
T ss_pred CCCCHHHHH----------------HHHHhcCCCCCCCc----cCCHHHHHHHHHhCCCCCCcCCCHHHHHHHHHHHH
Confidence 764433211 00000 00011111 13445889999999999999999999988887664
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-12 Score=118.53 Aligned_cols=189 Identities=19% Similarity=0.220 Sum_probs=142.0
Q ss_pred eEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeCCCcEEEEECCCCceeEEEecC
Q 008820 344 GIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLSDHSLLTVLEED 421 (552)
Q Consensus 344 ~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 421 (552)
.+.+++.+|..+++|+.||++|+|+..+...+.....|...|.++.|+ ++ +|++-+.| ..+||+.+++..+......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 577899999999999999999999988888888888899999999999 55 89999999 9999999999777666533
Q ss_pred CCCceEEEEEEcCCC-----CEEEEEECCCcEEEEeCC-----c---ceeeeecccceEEEE--EecCCEEEEEeCCCeE
Q 008820 422 SSGAVSSVLSLTAVQ-----HTLVVSHESGSIKVWRND-----K---FMKSMQTHKGSVFAV--FLEGKWLFTGGWDKTV 486 (552)
Q Consensus 422 ~~~~~~~~~~~s~~~-----~~l~~g~~dg~i~iwd~~-----~---~~~~~~~h~~~v~~v--~~~~~~l~sgs~dg~i 486 (552)
........+.|+.++ +..+.-..-+.|+.||+. + ..+....+ ..|.++ +.+|++++.|+.||.|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~-~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF-KSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc-CcceeEEEcCCCcEEEEeccCCcE
Confidence 333344445777666 333333445667776632 1 11112222 345554 4599999999999999
Q ss_pred EEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEEeCCCeEEEEEecC
Q 008820 487 SVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCADRTVKIALCNR 538 (552)
Q Consensus 487 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~Dg~v~iw~~~~ 538 (552)
-+++..+-+........ |...|+.+.|+|+ .+++.+.|....+..+..
T Consensus 306 ai~~~~~lq~~~~vk~a----H~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEA----HLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehhh----heeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999876665554433 3668999999975 488899999999988874
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.3e-13 Score=125.24 Aligned_cols=192 Identities=14% Similarity=0.164 Sum_probs=140.3
Q ss_pred EEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccc
Q 008820 256 TGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKK 333 (552)
Q Consensus 256 ~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 333 (552)
.+++|+ |..+++++.||++|||++.+...+.....|...|.++.|+|++. +|++-+.| ..+||+.+++........
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCc-EEEEecCC-ceEEEEeccCchhhhcCC
Confidence 567777 89999999999999999988888888888999999999999776 67888888 999999998743322222
Q ss_pred cccCCCceeeeEEEEeeCC---C--EEEEeeCCCcEEEEECCCCce-----eEEecCCCCCeEEEEEe--CCEEEEEeCC
Q 008820 334 WNEEKDWRYSGIHALTTSG---R--YLYTGSGDRTIKAWSLLDGTL-----SCTMSGHKSAVSTLAVC--NGVLYSGSRD 401 (552)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~---~--~l~sgs~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~~--~~~l~s~~~d 401 (552)
.... .....+.|..++ . .++.-..-+.|+.||+...+- ..+.......|++++++ +++++.|+.|
T Consensus 226 ~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 226 FSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred cccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 1111 111122455554 2 223333445677766532111 11112233469999999 3499999999
Q ss_pred CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 008820 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN 453 (552)
Q Consensus 402 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 453 (552)
|.|-+++..+.+.++..+..|...++. +.|+|+.+++++-+.+....+..+
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~-ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTG-LTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeee-EEEcCCcCcccccccCCceeEEEE
Confidence 999999999999998888887776666 699999999999888888888753
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-11 Score=108.92 Aligned_cols=233 Identities=14% Similarity=0.185 Sum_probs=158.6
Q ss_pred CeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEE-EEeeCC------CcEEE
Q 008820 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYL-YTGSGD------RTIKA 366 (552)
Q Consensus 294 ~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~sgs~d------g~i~i 366 (552)
...+++|+.+.. - .++..|.-.++|+.+--+.....+..... ..+..+-...+++ ++|+.+ +.|.|
T Consensus 7 ~~lsvs~NQD~S-c-Fava~~~Gfriyn~~P~ke~~~r~~~~~G-----~~~veMLfR~N~laLVGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 7 KTLSVSFNQDHS-C-FAVATDTGFRIYNCDPFKESASRQFIDGG-----FKIVEMLFRSNYLALVGGGSRPKYPPNKVII 79 (346)
T ss_pred ceeEEEEccCCc-e-EEEEecCceEEEecCchhhhhhhccccCc-----hhhhhHhhhhceEEEecCCCCCCCCCceEEE
Confidence 345588876554 3 44555677899998742221111111111 1112222333433 344433 47999
Q ss_pred EECCCCceeEEecCCCCCeEEEEEeCCEEEEEeCCCcEEEEECC-CCceeEEEecCCCCceEEEEEEcCC--CCEEEE-E
Q 008820 367 WSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLS-DHSLLTVLEEDSSGAVSSVLSLTAV--QHTLVV-S 442 (552)
Q Consensus 367 wd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~-g 442 (552)
||=...+++.++. ...+|.++.+..+.+++.- .+.|++|... +.+.++.+.......-. ++..|. ..+|+. |
T Consensus 80 WDD~k~~~i~el~-f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGl--C~~~~~~~k~~LafPg 155 (346)
T KOG2111|consen 80 WDDLKERCIIELS-FNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGL--CSLCPTSNKSLLAFPG 155 (346)
T ss_pred EecccCcEEEEEE-eccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCce--EeecCCCCceEEEcCC
Confidence 9977777887776 6788999999977777664 5789999997 56667766654322222 344443 333443 4
Q ss_pred ECCCcEEEEeCCc----ceeeeecccceEEEEEe--cCCEEEEEeCCCe-EEEEecCCCeeeeeeccCCCcccCcceEEE
Q 008820 443 HESGSIKVWRNDK----FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKT-VSVQELAGDEFEEDVIPTGAIPCGSVITAL 515 (552)
Q Consensus 443 ~~dg~i~iwd~~~----~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l 515 (552)
-.-|.|.|-|+.. ....+..|.+.|.|++. +|..+||+|..|+ |||||..+++....+..... .+.|.++
T Consensus 156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d---~A~iy~i 232 (346)
T KOG2111|consen 156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD---RADIYCI 232 (346)
T ss_pred CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc---hheEEEE
Confidence 4579999999653 24678899999999987 8999999999997 79999999988888766544 6779999
Q ss_pred EEeCC--eEEEEeCCCeEEEEEecCCc
Q 008820 516 LYWQG--KLFVGCADRTVKIALCNRQI 540 (552)
Q Consensus 516 ~~~~~--~l~s~s~Dg~v~iw~~~~~~ 540 (552)
+|+++ .|+++|..|+|+|+.+..+.
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 99975 48889999999999997543
|
|
| >PHA02988 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-14 Score=139.61 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=69.9
Q ss_pred hccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhhh
Q 008820 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIACL 112 (552)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~ 112 (552)
...||+.|||||++.+ ....++.++|||||||++|||++|+ ||...+...+.
T Consensus 179 ~~~~~~~y~aPE~~~~-------------~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~~~~~-------------- 231 (283)
T PHA02988 179 KNVNFMVYFSYKMLND-------------IFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTTKEIY-------------- 231 (283)
T ss_pred cccCcccccCHHHhhh-------------ccccccchhhhhHHHHHHHHHHHCCCCCCCCCHHHHH--------------
Confidence 4579999999999822 1145678999999999999999999 99764433111
Q ss_pred hhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 113 GMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
........ ...........+.+++.+||+.+|.+||++.++.+.+..+
T Consensus 232 ---~~i~~~~~--~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ell~~l~~~ 279 (283)
T PHA02988 232 ---DLIINKNN--SLKLPLDCPLEIKCIVEACTSHDSIKRPNIKEILYNLSLY 279 (283)
T ss_pred ---HHHHhcCC--CCCCCCcCcHHHHHHHHHHhcCCcccCcCHHHHHHHHHHH
Confidence 00000000 0000112344599999999999999999999999887764
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6e-13 Score=125.41 Aligned_cols=284 Identities=14% Similarity=0.128 Sum_probs=206.7
Q ss_pred hhcCCCCCCCccccceeeecCcceEEEeeCCCeEEEEEe----------ecCccceEEEEEc----CCEEEEEeCCCcEE
Q 008820 210 ELLGAENSDGADIDQARAAGGVKDLVNGLSKGNVKFKDL----------QGHRDCVTGLAVG----GGFLFSSSFDKSIH 275 (552)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----------~~H~~~V~~l~~s----~~~l~s~s~dg~I~ 275 (552)
.+....+.+...++.+.+...+..+++++.+..+.+|+. .||...|..-.|- .+.+++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 344445566667888888899999999999999998873 5788888777664 78899999999999
Q ss_pred EEeCCC-CeE--EEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEE--EEee
Q 008820 276 VWSLKD-FSH--VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIH--ALTT 350 (552)
Q Consensus 276 iwd~~~-~~~--~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 350 (552)
+=.+.. +.+ ...+..|.++|..++.-|....-|.+++.|+.+.-+|++.......+........ ...... ++.|
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~-~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK-ERVGLYTIAVDP 291 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCc-cceeeeeEecCC
Confidence 877643 333 2445679999999999999999999999999999999987655444432222221 112222 4444
Q ss_pred CC-CEEEEeeCCCcEEEEECCCCc------eeEEec------CCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCC--C-
Q 008820 351 SG-RYLYTGSGDRTIKAWSLLDGT------LSCTMS------GHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSD--H- 412 (552)
Q Consensus 351 ~~-~~l~sgs~dg~i~iwd~~~~~------~~~~~~------~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~--~- 412 (552)
.. ..+++|+.|..+++||.+.-. .+.++- ...-.|+|++|+ ++-++++..|-.|+++.-.- |
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 43 389999999999999986432 122322 223468999999 44777788888999995432 2
Q ss_pred ---------ceeEE-EecCCC-CceEEEEEEcCCCCEEEEEECCCcEEEEeC--CcceeeeecccceEEEEEe--cCCEE
Q 008820 413 ---------SLLTV-LEEDSS-GAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFMKSMQTHKGSVFAVFL--EGKWL 477 (552)
Q Consensus 413 ---------~~~~~-~~~~~~-~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~--~~~~~~~~~h~~~v~~v~~--~~~~l 477 (552)
..+.. +++|.. ..+..+-.|.|...++++|+.-|.|.||+- .+.++.+++...-|+|+.+ ---.|
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvL 451 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVL 451 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchh
Confidence 12222 555532 234455678899999999999999999994 4567777877778999987 56689
Q ss_pred EEEeCCCeEEEEecCCC
Q 008820 478 FTGGWDKTVSVQELAGD 494 (552)
Q Consensus 478 ~sgs~dg~i~iwd~~~~ 494 (552)
|+++-|..|+||...+.
T Consensus 452 AsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 452 ASSGIDHDVKIWTPLTA 468 (559)
T ss_pred hccCCccceeeecCCcc
Confidence 99999999999987443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-10 Score=112.15 Aligned_cols=237 Identities=14% Similarity=0.156 Sum_probs=147.7
Q ss_pred CccceEEEEEc--CCEEEEEe-CCCcEEEEeCC-CCeE--EEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCC
Q 008820 251 HRDCVTGLAVG--GGFLFSSS-FDKSIHVWSLK-DFSH--VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF 324 (552)
Q Consensus 251 H~~~V~~l~~s--~~~l~s~s-~dg~I~iwd~~-~~~~--~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 324 (552)
+.+....++++ +++|+.++ .++.|.+|+++ +++. +.... ..+....++++|+++.++++...++.|.+|+++.
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 34556778888 77776654 58889999986 3432 22222 3345678999998887766666799999999974
Q ss_pred CCCC-ccccccccCCCceeeeEEEEeeCCCEEEE-eeCCCcEEEEECCCCceeE-------EecCCCCCeEEEEEe-C-C
Q 008820 325 PLGH-EPLKKWNEEKDWRYSGIHALTTSGRYLYT-GSGDRTIKAWSLLDGTLSC-------TMSGHKSAVSTLAVC-N-G 393 (552)
Q Consensus 325 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-gs~dg~i~iwd~~~~~~~~-------~~~~h~~~v~~l~~~-~-~ 393 (552)
.... .......... .. ....++|+++++++ ...++.|.+||+++...+. ... .......+.|+ + .
T Consensus 112 ~g~~~~~~~~~~~~~--~~-~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~ 187 (330)
T PRK11028 112 DGIPVAPIQIIEGLE--GC-HSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQ 187 (330)
T ss_pred CCCCCCceeeccCCC--cc-cEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCC
Confidence 3211 1222111111 11 12467899987754 5567999999997633221 111 12345678998 3 3
Q ss_pred EEEEEeC-CCcEEEEECCC--Cc--eeEEEecCCC---C-ceEEEEEEcCCCCEEEEEEC-CCcEEEEeCCc--ceeeee
Q 008820 394 VLYSGSR-DGTIRLWSLSD--HS--LLTVLEEDSS---G-AVSSVLSLTAVQHTLVVSHE-SGSIKVWRNDK--FMKSMQ 461 (552)
Q Consensus 394 ~l~s~~~-dg~i~iwd~~~--~~--~~~~~~~~~~---~-~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~--~~~~~~ 461 (552)
+++++.. +++|.+||+.. ++ .+..+..... + .....+.++|++++++++.. ++.|.+|+... ....+.
T Consensus 188 ~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~ 267 (330)
T PRK11028 188 YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE 267 (330)
T ss_pred EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe
Confidence 7766665 99999999973 33 2333322110 1 11122678999999999864 78999998632 122222
Q ss_pred ccc-----ceEEEEEecCCEEEEEeC-CCeEEEEecC
Q 008820 462 THK-----GSVFAVFLEGKWLFTGGW-DKTVSVQELA 492 (552)
Q Consensus 462 ~h~-----~~v~~v~~~~~~l~sgs~-dg~i~iwd~~ 492 (552)
++. ..-..++++|++|+++.. +++|.+|+++
T Consensus 268 ~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 268 GHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 221 122345569999998775 8999999875
|
|
| >KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-14 Score=135.65 Aligned_cols=100 Identities=22% Similarity=0.260 Sum_probs=71.9
Q ss_pred hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCch
Q 008820 30 LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDN 108 (552)
Q Consensus 30 ~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~ 108 (552)
..++..+|||+|||||.+.+. ......+.+-|||||||+||.||.|+ ||-++....+
T Consensus 270 ~~L~~tvGTPAF~APE~c~~~-----------~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~~~l----------- 327 (576)
T KOG0585|consen 270 DQLSRTVGTPAFFAPELCSGG-----------NSFSYSGFALDIWALGVTLYCLLFGQLPFFDDFELEL----------- 327 (576)
T ss_pred HHHhhcCCCccccchHhhcCC-----------CCccccchhhhhhhhhhhHHHhhhccCCcccchHHHH-----------
Confidence 358889999999999999321 11345567899999999999999999 9988665422
Q ss_pred hhhhhhhHHHHHHHHHHHhh--hhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 109 IACLGMYMAWMEKVTYLLEN--KFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
+.++...+.. ..+.....++++|.++|++||++|.+..++...
T Consensus 328 ----------~~KIvn~pL~fP~~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~H 372 (576)
T KOG0585|consen 328 ----------FDKIVNDPLEFPENPEINEDLKDLIKRLLEKDPEQRITLPDIKLH 372 (576)
T ss_pred ----------HHHHhcCcccCCCcccccHHHHHHHHHHhhcChhheeehhhheec
Confidence 2222222211 111234569999999999999999998776553
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.6e-11 Score=106.19 Aligned_cols=176 Identities=17% Similarity=0.268 Sum_probs=134.2
Q ss_pred CcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC-CCCCCccccccccCCCceeeeEEEEee
Q 008820 272 KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS-FPLGHEPLKKWNEEKDWRYSGIHALTT 350 (552)
Q Consensus 272 g~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (552)
..|.|||=...+++.++. ...+|.+|.+.++ .++ .-..+.|.+|.+. ..+....+.+....+ +++++.+
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~---riV-vvl~~~I~VytF~~n~k~l~~~et~~NPk-----GlC~~~~ 144 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD---RIV-VVLENKIYVYTFPDNPKLLHVIETRSNPK-----GLCSLCP 144 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC---eEE-EEecCeEEEEEcCCChhheeeeecccCCC-----ceEeecC
Confidence 469999966677777776 6789999999764 223 3356899999987 334344444433332 2556666
Q ss_pred CCC--EEEE-eeCCCcEEEEECCCCce--eEEecCCCCCeEEEEEe-C-CEEEEEeCCCc-EEEEECCCCceeEEEecCC
Q 008820 351 SGR--YLYT-GSGDRTIKAWSLLDGTL--SCTMSGHKSAVSTLAVC-N-GVLYSGSRDGT-IRLWSLSDHSLLTVLEEDS 422 (552)
Q Consensus 351 ~~~--~l~s-gs~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~-~-~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~ 422 (552)
..+ +|+. |-.-|.|.+-|+...+. ...+.+|.+.|.|++.+ + .++||+|..|+ |||||..+|+.+..++...
T Consensus 145 ~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~ 224 (346)
T KOG2111|consen 145 TSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV 224 (346)
T ss_pred CCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC
Confidence 533 4443 45669999999976655 46788999999999999 4 49999999997 7999999999999998776
Q ss_pred CCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcce
Q 008820 423 SGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFM 457 (552)
Q Consensus 423 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 457 (552)
......+++|||+..+|++++..|++.|+.++...
T Consensus 225 d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 225 DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred chheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 66666678999999999999999999999876533
|
|
| >KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.8e-14 Score=140.42 Aligned_cols=96 Identities=26% Similarity=0.358 Sum_probs=72.9
Q ss_pred hhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchh
Q 008820 31 FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNI 109 (552)
Q Consensus 31 ~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~ 109 (552)
.+-+-+|+|.|.|||++ .| .-.-+.++||||.|||||.||||+ ||+.++...|.
T Consensus 167 lLeTSCGSPHYA~PEIV------~G--------~pYdG~~sDVWSCGVILfALLtG~LPFdDdNir~LL----------- 221 (786)
T KOG0588|consen 167 LLETSCGSPHYAAPEIV------SG--------RPYDGRPSDVWSCGVILFALLTGKLPFDDDNIRVLL----------- 221 (786)
T ss_pred cccccCCCcccCCchhh------cC--------CCCCCCccccchhHHHHHHHHhCCCCCCCccHHHHH-----------
Confidence 46777999999999999 44 112257999999999999999999 99988877431
Q ss_pred hhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 110 ACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
........++|.. ..++.+++|.++|..||..|.+++++.+.
T Consensus 222 ------lKV~~G~f~MPs~----Is~eaQdLLr~ml~VDp~~RiT~~eI~kH 263 (786)
T KOG0588|consen 222 ------LKVQRGVFEMPSN----ISSEAQDLLRRMLDVDPSTRITTEEILKH 263 (786)
T ss_pred ------HHHHcCcccCCCc----CCHHHHHHHHHHhccCccccccHHHHhhC
Confidence 1111222333322 45569999999999999999999998875
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-13 Score=129.48 Aligned_cols=225 Identities=15% Similarity=0.239 Sum_probs=169.1
Q ss_pred CeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCc
Q 008820 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT 373 (552)
Q Consensus 294 ~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~ 373 (552)
.-+.+.++.+|. .++.|+.-|.+-.+|+.+......+.....-.+ + .|-.+.++++++ ....+++|| +.|.
T Consensus 131 GPY~~~ytrnGr-hlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~D-----v-~~LHneq~~AVA-QK~y~yvYD-~~Gt 201 (545)
T KOG1272|consen 131 GPYHLDYTRNGR-HLLLGGRKGHLAAFDWVTKKLHFEINVMETVRD-----V-TFLHNEQFFAVA-QKKYVYVYD-NNGT 201 (545)
T ss_pred CCeeeeecCCcc-EEEecCCccceeeeecccceeeeeeehhhhhhh-----h-hhhcchHHHHhh-hhceEEEec-CCCc
Confidence 346677777555 667888899999999987765444433222111 1 222334455555 558899999 5788
Q ss_pred eeEEecCCCCCeEEEEEeCC--EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEE
Q 008820 374 LSCTMSGHKSAVSTLAVCNG--VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW 451 (552)
Q Consensus 374 ~~~~~~~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 451 (552)
.++.++.|. .|..+.|.+. +|++++..|.++.-|+.+|+.+..+.... + ...++.-+|-+..+-+|..+|+|.+|
T Consensus 202 ElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~-G-~~~vm~qNP~NaVih~GhsnGtVSlW 278 (545)
T KOG1272|consen 202 ELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA-G-RTDVMKQNPYNAVIHLGHSNGTVSLW 278 (545)
T ss_pred EEeehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC-C-ccchhhcCCccceEEEcCCCceEEec
Confidence 888887554 5888999855 78889999999999999999988887653 2 33447888989999999999999999
Q ss_pred e--CCcceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCeEEEEeC
Q 008820 452 R--NDKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCA 527 (552)
Q Consensus 452 d--~~~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~ 527 (552)
. ..+++..+..|.++|.++++ +|++++|.+.|..++|||++.-........ ..+...+++|+..+++.+.
T Consensus 279 SP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t------p~~a~~ls~SqkglLA~~~ 352 (545)
T KOG1272|consen 279 SPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT------PHPASNLSLSQKGLLALSY 352 (545)
T ss_pred CCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec------CCCccccccccccceeeec
Confidence 8 45678888899999999987 899999999999999999997643222221 3346778888877777777
Q ss_pred CCeEEEEEe
Q 008820 528 DRTVKIALC 536 (552)
Q Consensus 528 Dg~v~iw~~ 536 (552)
...|.||.=
T Consensus 353 G~~v~iw~d 361 (545)
T KOG1272|consen 353 GDHVQIWKD 361 (545)
T ss_pred CCeeeeehh
Confidence 779999964
|
|
| >cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.5e-14 Score=139.97 Aligned_cols=120 Identities=15% Similarity=0.182 Sum_probs=79.2
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
.+|+. |+++.+.........+...||+.|||||++ . ...++.++|||||||+||||++ |. |
T Consensus 212 ~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~------~---------~~~~~~~sDiwslG~il~el~~~g~~p 276 (338)
T cd05102 212 VVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESI------F---------DKVYTTQSDVWSFGVLLWEIFSLGASP 276 (338)
T ss_pred cEEEeecccccccccCcchhcccCCCCCccccCcHHh------h---------cCCCCcccCHHHHHHHHHHHHhCCCCC
Confidence 45665 666655443322224456678999999999 2 2456789999999999999997 99 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|......... ........ ..........++.+++.+||+.+|.+||++.++.+.+..++
T Consensus 277 f~~~~~~~~~----------------~~~~~~~~---~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~el~~~l~~~~ 335 (338)
T cd05102 277 YPGVQINEEF----------------CQRLKDGT---RMRAPENATPEIYRIMLACWQGDPKERPTFSALVEILGDLL 335 (338)
T ss_pred CCCCCccHHH----------------HHHHhcCC---CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 9763221000 00000000 00011123445899999999999999999999999888765
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.8e-12 Score=128.11 Aligned_cols=230 Identities=12% Similarity=0.153 Sum_probs=145.9
Q ss_pred CCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCC--CcEEEEeCCCCCCCccccccccCCCceeeeEEEE
Q 008820 271 DKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSG--GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHAL 348 (552)
Q Consensus 271 dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (552)
+..|.+||.+... .+.+..|...+.+.+|+|++..++.+...+ ..|++||+.++... .+.....+. ...++
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-~l~~~~g~~-----~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-VVASFRGHN-----GAPAF 255 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-EEecCCCcc-----CceeE
Confidence 4689999986544 566777888999999999888665544332 46999999865422 222222211 13489
Q ss_pred eeCCCEEEEee-CCCcEEEE--ECCCCceeEEecCCCCCeEEEEEe-CC-EEE-EEeCCCcEEEEECCCC-ceeEEEecC
Q 008820 349 TTSGRYLYTGS-GDRTIKAW--SLLDGTLSCTMSGHKSAVSTLAVC-NG-VLY-SGSRDGTIRLWSLSDH-SLLTVLEED 421 (552)
Q Consensus 349 ~~~~~~l~sgs-~dg~i~iw--d~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~-s~~~dg~i~iwd~~~~-~~~~~~~~~ 421 (552)
+|+|+.|+.++ .+|.+.+| |+.+++. ..+..+...+.+..|+ ++ .++ ++..++..++|++... .....+ .+
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~ 333 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG 333 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC
Confidence 99999877764 67865555 6666554 4566677778889999 43 555 4446788888887542 222222 22
Q ss_pred CCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcc-eeee-ecccceEEEEEecCCEEEEEeCCCeEEEEecC--CCeee
Q 008820 422 SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF-MKSM-QTHKGSVFAVFLEGKWLFTGGWDKTVSVQELA--GDEFE 497 (552)
Q Consensus 422 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~-~~h~~~v~~v~~~~~~l~sgs~dg~i~iwd~~--~~~~~ 497 (552)
.+ .. ..++|+|+.++..+.++ +.+||+.+. ...+ ..+...-.++++||++|+.++.++.+.+|++. ++...
T Consensus 334 -~~--~~-~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~ 408 (429)
T PRK01742 334 -RG--YS-AQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFK 408 (429)
T ss_pred -CC--CC-ccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence 22 22 57999999998887765 566886532 2222 22222223456799999999999988888763 34343
Q ss_pred eeeccCCCcccCcceEEEEEeC
Q 008820 498 EDVIPTGAIPCGSVITALLYWQ 519 (552)
Q Consensus 498 ~~~~~~~~~~~~~~v~~l~~~~ 519 (552)
..+... ...+...+|+|
T Consensus 409 ~~l~~~-----~g~~~~p~wsp 425 (429)
T PRK01742 409 ARLPGS-----DGQVKFPAWSP 425 (429)
T ss_pred EEccCC-----CCCCCCcccCC
Confidence 333321 34466677775
|
|
| >cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-14 Score=138.31 Aligned_cols=113 Identities=14% Similarity=0.108 Sum_probs=74.0
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
+|+. |+++....... ....+.||+.|||||++ . ...++.++|||||||+||||+||+ ||.
T Consensus 132 ~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~------~---------~~~~~~~~DvwslGvil~el~tg~~pf~ 194 (312)
T cd05585 132 IALCDFGLCKLNMKDDD--KTNTFCGTPEYLAPELL------L---------GHGYTKAVDWWTLGVLLYEMLTGLPPFY 194 (312)
T ss_pred EEEEECcccccCccCCC--ccccccCCcccCCHHHH------c---------CCCCCCccceechhHHHHHHHhCCCCcC
Confidence 4454 45544332222 24567899999999999 2 245678999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHh
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~ 164 (552)
......+. ......+.........++.+++.+||+.+|.+||+...+.+.+..
T Consensus 195 ~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~~~~~~~e~l~h 247 (312)
T cd05585 195 DENVNEMY---------------------RKILQEPLRFPDGFDRDAKDLLIGLLSRDPTRRLGYNGAQEIKNH 247 (312)
T ss_pred CCCHHHHH---------------------HHHHcCCCCCCCcCCHHHHHHHHHHcCCCHHHcCCCCCHHHHHcC
Confidence 64433211 111111111112234458899999999999999986655554443
|
Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl |
| >KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5e-14 Score=135.66 Aligned_cols=93 Identities=24% Similarity=0.323 Sum_probs=70.8
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
+.|+||-.|.+||.+ .....++.||||+||||||+||.|. ||.+.+.- +
T Consensus 245 ~SFVGTAeYVSPElL---------------~~~~~~~~sDiWAlGCilyQmlaG~PPFra~Ney-l-------------- 294 (604)
T KOG0592|consen 245 SSFVGTAEYVSPELL---------------NDSPAGPSSDLWALGCILYQMLAGQPPFRAANEY-L-------------- 294 (604)
T ss_pred cceeeeecccCHHHh---------------cCCCCCcccchHHHHHHHHHHhcCCCCCccccHH-H--------------
Confidence 669999999999999 3467789999999999999999999 99885522 1
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
+.+++........+.-+....+++.++|..+|.+|.+..++.+.
T Consensus 295 ------iFqkI~~l~y~fp~~fp~~a~dLv~KLLv~dp~~Rlt~~qIk~H 338 (604)
T KOG0592|consen 295 ------IFQKIQALDYEFPEGFPEDARDLIKKLLVRDPSDRLTSQQIKAH 338 (604)
T ss_pred ------HHHHHHHhcccCCCCCCHHHHHHHHHHHccCccccccHHHHhhC
Confidence 22233333322223334458899999999999999999777653
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.1e-12 Score=119.50 Aligned_cols=256 Identities=17% Similarity=0.187 Sum_probs=168.7
Q ss_pred cCccceEEEEEc-CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEe-------cCCCCEEEEEcCCCcEEEEe
Q 008820 250 GHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYV-------DEDQPLCISGDSGGGIFVWS 321 (552)
Q Consensus 250 ~H~~~V~~l~~s-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~-------~~~~~~l~s~~~dg~i~vwd 321 (552)
-|..-|.|+.|+ ..-++.++.|..+.+|.-.+......+.-..+-+....+. ..+...++.++.||.+.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 466667788888 5666666667777776544333333222222222111110 01234678899999999886
Q ss_pred CCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCC---EEEEE
Q 008820 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNG---VLYSG 398 (552)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~ 398 (552)
-.. +....+. .|.. ......++++|.-|+++++||.|++|. ++|....++.....+|.|++|.++ .+++.
T Consensus 92 k~~-rVE~sv~---AH~~--A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 92 KSA-RVERSIS---AHAA--AISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred ccc-hhhhhhh---hhhh--hhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec
Confidence 431 1111121 1111 111235789999999999999999999 577777777777889999999832 45444
Q ss_pred eCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEe-CCcceeeeecccceEEEEEecC-CE
Q 008820 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR-NDKFMKSMQTHKGSVFAVFLEG-KW 476 (552)
Q Consensus 399 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd-~~~~~~~~~~h~~~v~~v~~~~-~~ 476 (552)
.+.+.+=.+.....+-.++.| .+.+.+ +.|++..+++++|++|-..++|| .+..+..-..|..+|++++|+. ..
T Consensus 165 --g~h~~IKpL~~n~k~i~WkAH-DGiiL~-~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~ 240 (737)
T KOG1524|consen 165 --GGHISIKPLAANSKIIRWRAH-DGLVLS-LSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKD 240 (737)
T ss_pred --CCeEEEeecccccceeEEecc-CcEEEE-eecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccccc
Confidence 456666666666666677766 455555 69999999999999999999999 5667777888999999999944 44
Q ss_pred EEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-C-eEEEEeCCCeEEE
Q 008820 477 LFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-G-KLFVGCADRTVKI 533 (552)
Q Consensus 477 l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~-~l~s~s~Dg~v~i 533 (552)
++.+|. +++++= .+..+.|..++|++ + ++++|+..|.+.+
T Consensus 241 ~~v~S~-nt~R~~----------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 241 YLLWSY-NTARFS----------------SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeee-eeeeec----------------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 444443 345411 11255689999994 3 4888888887755
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-12 Score=123.66 Aligned_cols=196 Identities=16% Similarity=0.240 Sum_probs=142.7
Q ss_pred ceEEEeeCCCeEEEEE--------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEe
Q 008820 232 KDLVNGLSKGNVKFKD--------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYV 301 (552)
Q Consensus 232 ~~~~~~~~~~~~~~~~--------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~ 301 (552)
..++..++||+..+-. ..+|.++|.|-.|+ |.-|+|++.||.|++|. .+|-...++.....+|.|++|.
T Consensus 76 d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~ 154 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWA 154 (737)
T ss_pred ceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEEC
Confidence 3455555666655543 57899999999999 99999999999999998 5676666666778899999999
Q ss_pred cCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCC
Q 008820 302 DEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGH 381 (552)
Q Consensus 302 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h 381 (552)
|+.+.++++.+ +.+.+=.+.. ...+..|..|.+. .-...+++..+.+++|++|-..++||. .|..+..-..|
T Consensus 155 p~S~~vl~c~g--~h~~IKpL~~---n~k~i~WkAHDGi--iL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ 226 (737)
T KOG1524|consen 155 PNSNSIVFCQG--GHISIKPLAA---NSKIIRWRAHDGL--VLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAE 226 (737)
T ss_pred CCCCceEEecC--CeEEEeeccc---ccceeEEeccCcE--EEEeecCccccceeecCCceeEEeecc-cCcccccCChh
Confidence 99988887765 4444433332 2233344444432 112345566779999999999999996 67788888889
Q ss_pred CCCeEEEEEeCC-EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEE
Q 008820 382 KSAVSTLAVCNG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKV 450 (552)
Q Consensus 382 ~~~v~~l~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 450 (552)
..+|++++|.++ .++.+|. +++| +.....+.+.. ++||+||..+++|+..|.+.+
T Consensus 227 ey~ITSva~npd~~~~v~S~-nt~R------------~~~p~~GSifn-lsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 227 EYAITSVAFNPEKDYLLWSY-NTAR------------FSSPRVGSIFN-LSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ccceeeeeeccccceeeeee-eeee------------ecCCCccceEE-EEEcCCCceeeccccCceEEE
Confidence 999999999955 4444443 4555 33333444555 699999999999999998765
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-11 Score=113.09 Aligned_cols=254 Identities=15% Similarity=0.165 Sum_probs=172.8
Q ss_pred ccceEEEEEc----CCEEEEEeCCCcEEEEeCCCCeEEEE------EeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEe
Q 008820 252 RDCVTGLAVG----GGFLFSSSFDKSIHVWSLKDFSHVHT------FKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (552)
Q Consensus 252 ~~~V~~l~~s----~~~l~s~s~dg~I~iwd~~~~~~~~~------~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 321 (552)
...|++++|. ...+...+.|..+....+....+... ......+|..++... ..|++|-.+|.+.+|.
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC---CEEEEEecCCcEEEEe
Confidence 4567777776 44555555777777777766554433 334566777776532 3678899999999999
Q ss_pred CCCCCCCcc-ccccccCCCceeeeEEEEeeCCCEEEEeeCC--CcEEEEECCCCceeEEecCCC---------CCeEEEE
Q 008820 322 FSFPLGHEP-LKKWNEEKDWRYSGIHALTTSGRYLYTGSGD--RTIKAWSLLDGTLSCTMSGHK---------SAVSTLA 389 (552)
Q Consensus 322 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d--g~i~iwd~~~~~~~~~~~~h~---------~~v~~l~ 389 (552)
...+..... +..+..+. ....+-....+...+++|+.. ..+.+||+++.+.++.-+.-. -.++++.
T Consensus 132 ~k~~d~hss~l~~la~g~--g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGP--GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred ccCCccccccceeeecCC--ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 885542211 11111111 111111222234577889998 889999999886666543221 2456777
Q ss_pred Ee-C--C-EEEEEeCCCcEEEEECCCCc-eeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcc---eeeee
Q 008820 390 VC-N--G-VLYSGSRDGTIRLWSLSDHS-LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF---MKSMQ 461 (552)
Q Consensus 390 ~~-~--~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---~~~~~ 461 (552)
|- + + .|+++..-+.+|+||.+.++ ++..+.... ..+.+ +...|+++++++|..-|.+..||.++. ...++
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E-~~is~-~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~k 287 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLE-NPISS-TGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLK 287 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEecccc-Cccee-eeecCCCcEEEEecccchhheecccCceeeccccC
Confidence 77 3 3 89999999999999998765 566666553 33343 688999999999999999999997752 33478
Q ss_pred cccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEe
Q 008820 462 THKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW 518 (552)
Q Consensus 462 ~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 518 (552)
+-.+.+.++.. ...+++++|-|..|||+|+.+.++...... .+..+.+.+.
T Consensus 288 g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv------Ks~lt~il~~ 340 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV------KSRLTFILLR 340 (412)
T ss_pred CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh------hccccEEEec
Confidence 88999999876 567999999999999999998655443322 3345555554
|
|
| >cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1 | Back alignment and domain information |
|---|
Probab=99.43 E-value=7e-14 Score=136.86 Aligned_cols=92 Identities=17% Similarity=0.165 Sum_probs=65.6
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
...+.||+.|||||++ . ...++.++|||||||+||||++|+ ||.......+
T Consensus 153 ~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~------------- 204 (325)
T cd05602 153 TSTFCGTPEYLAPEVL------H---------KQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEM------------- 204 (325)
T ss_pred cccccCCccccCHHHH------c---------CCCCCCccccccccHHHHHHhcCCCCCCCCCHHHH-------------
Confidence 5567899999999999 2 255678999999999999999999 9965433311
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVW 159 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~ 159 (552)
...+...+.........++.+++.+||+.+|.+|++..+..
T Consensus 205 --------~~~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~ 245 (325)
T cd05602 205 --------YDNILNKPLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDF 245 (325)
T ss_pred --------HHHHHhCCcCCCCCCCHHHHHHHHHHcccCHHHCCCCCCCH
Confidence 11111111111122345689999999999999999976433
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt |
| >cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.9e-14 Score=137.23 Aligned_cols=87 Identities=17% Similarity=0.244 Sum_probs=61.6
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
...+.||+.|||||++ . ...++.++|||||||+||||+||+ ||.......+.
T Consensus 152 ~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~------------ 204 (323)
T cd05571 152 MKTFCGTPEYLAPEVL------E---------DNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLF------------ 204 (323)
T ss_pred ccceecCccccChhhh------c---------CCCCCccccCcccchhhhhhhcCCCCCCCCCHHHHH------------
Confidence 4567899999999998 2 245678999999999999999999 99654433111
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcc
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~ 154 (552)
...... ..........++.+++.+||+.+|.+||+
T Consensus 205 -----~~~~~~----~~~~p~~~~~~~~~li~~~L~~dP~~R~~ 239 (323)
T cd05571 205 -----ELILME----EIRFPRTLSPEAKSLLAGLLKKDPKQRLG 239 (323)
T ss_pred -----HHHHcC----CCCCCCCCCHHHHHHHHHHccCCHHHcCC
Confidence 000000 00111123445899999999999999995
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-11 Score=117.92 Aligned_cols=243 Identities=13% Similarity=0.172 Sum_probs=169.2
Q ss_pred CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCc---------ccccc------------------ccCCCcee
Q 008820 290 GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHE---------PLKKW------------------NEEKDWRY 342 (552)
Q Consensus 290 ~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---------~~~~~------------------~~~~~~~~ 342 (552)
.|...-+.|..+|++.+++++|..--.|++||+....... .+..+ ....+.+.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 3677889999999999999999999999999987532110 00000 00000000
Q ss_pred e-eEE------EE-eeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCC
Q 008820 343 S-GIH------AL-TTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDH 412 (552)
Q Consensus 343 ~-~~~------~~-~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~ 412 (552)
. .+- ++ .|+.. |+.++....|+-++++.|..+..+....+.++++..+ .++|++|+.||.|.+||.+..
T Consensus 129 ~~RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred eeecCcCCccccccCCCcc-EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence 0 000 11 12223 4444555679999999999999998888999999998 669999999999999999988
Q ss_pred ceeEEEecCCC---------CceEEEEEEcCCCCEEEEEECCCcEEEEeCCccee-eeecc--cceEEEEEe----cCCE
Q 008820 413 SLLTVLEEDSS---------GAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMK-SMQTH--KGSVFAVFL----EGKW 476 (552)
Q Consensus 413 ~~~~~~~~~~~---------~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~h--~~~v~~v~~----~~~~ 476 (552)
..+.++..... ....+.+.|+.+|-.+++|+.+|.+.|||++...- ..+.| .-+|..+.| ++..
T Consensus 208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~ 287 (703)
T KOG2321|consen 208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNK 287 (703)
T ss_pred hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCce
Confidence 77666654321 12234478999999999999999999999875322 22334 457778887 2345
Q ss_pred EEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEEeCCCeEEEEEecCCc
Q 008820 477 LFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGCADRTVKIALCNRQI 540 (552)
Q Consensus 477 l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~Dg~v~iw~~~~~~ 540 (552)
++|.. ...++|||-.+++....... ...++.+++-+ |.+++|-.++.+..|-++.-+
T Consensus 288 v~S~D-k~~~kiWd~~~Gk~~asiEp------t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 288 VVSMD-KRILKIWDECTGKPMASIEP------TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred EEecc-hHHhhhcccccCCceeeccc------cCCcCceeeecCCceEEEecCCCcceeEEccccC
Confidence 55554 56899999998877665554 34477777775 568899999999888776433
|
|
| >KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-14 Score=125.75 Aligned_cols=111 Identities=17% Similarity=0.267 Sum_probs=73.6
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDY 96 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~ 96 (552)
|.|.|+.++-. -+.-.|-|+|||||.+- + +...+++-++||||||++||||.||+ ||.+-...
T Consensus 237 GIsGrlvdSkA---htrsAGC~~YMaPERid---------p---~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~td- 300 (391)
T KOG0983|consen 237 GISGRLVDSKA---HTRSAGCAAYMAPERID---------P---PDKPKYDIRADVWSLGITLVELATGQYPYKGCKTD- 300 (391)
T ss_pred cccceeecccc---cccccCCccccCccccC---------C---CCCCccchhhhhhhhccchhhhhcccCCCCCCCcc-
Confidence 66777777755 58889999999999981 1 12467788999999999999999999 99662211
Q ss_pred hhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 97 IRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+++..+..+.|..+.. -..-.+.+.+++..||.+|+.+||.-.++.+
T Consensus 301 ---------------Fe~ltkvln~ePP~L~~-~~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~ 348 (391)
T KOG0983|consen 301 ---------------FEVLTKVLNEEPPLLPG-HMGFSPDFQSFVKDCLTKDHRKRPKYNKLLE 348 (391)
T ss_pred ---------------HHHHHHHHhcCCCCCCc-ccCcCHHHHHHHHHHhhcCcccCcchHHHhc
Confidence 00011111111101100 0112345889999999999999998655443
|
|
| >cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4 | Back alignment and domain information |
|---|
Probab=99.43 E-value=6e-14 Score=134.68 Aligned_cols=107 Identities=15% Similarity=0.193 Sum_probs=69.4
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|++ |++..+..... .....||+.|||||++ . ...+++++|||||||+||||++|+ ||.
T Consensus 141 ~kl~Dfg~~~~~~~~~~---~~~~~g~~~y~aPE~~------~---------~~~~~~~~DvwslGvil~el~~g~~pf~ 202 (285)
T cd05631 141 IRISDLGLAVQIPEGET---VRGRVGTVGYMAPEVI------N---------NEKYTFSPDWWGLGCLIYEMIQGQSPFR 202 (285)
T ss_pred EEEeeCCCcEEcCCCCe---ecCCCCCCCccCHhhh------c---------CCCCCcccCchhHHHHHHHHHhCCCCCC
Confidence 4555 55655443322 3567899999999999 2 356778999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcch
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~ 155 (552)
....... .....................++.+++.+||+.+|.+||+.
T Consensus 203 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~P~~R~~~ 250 (285)
T cd05631 203 KRKERVK-----------------REEVDRRVKEDQEEYSEKFSEDAKSICRMLLTKNPKERLGC 250 (285)
T ss_pred CCCcchh-----------------HHHHHHHhhcccccCCccCCHHHHHHHHHHhhcCHHHhcCC
Confidence 6332100 00011111111111112234458899999999999999984
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i |
| >cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.9e-14 Score=133.44 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=75.3
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELID 95 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~ 95 (552)
|+++.+...+.........||+.|||||++ ....+++++|||||||+||||++ |. ||.+....
T Consensus 169 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~---------------~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~~ 233 (283)
T cd05048 169 GLSRDIYSADYYRVQSKSLLPVRWMPPEAI---------------LYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQ 233 (283)
T ss_pred cceeeccccccccccCCCcccccccCHHHh---------------ccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCHH
Confidence 455554443332234566789999999998 23567789999999999999998 99 99764333
Q ss_pred hhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHh
Q 008820 96 YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (552)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~ 164 (552)
.+. ..+... ...........++.+++.+|++.+|.+||++.++.+.+..
T Consensus 234 ~~~-----------------~~i~~~---~~~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~ 282 (283)
T cd05048 234 EVI-----------------EMIRSR---QLLPCPEDCPARVYALMIECWNEIPARRPRFKDIHTRLRS 282 (283)
T ss_pred HHH-----------------HHHHcC---CcCCCcccCCHHHHHHHHHHccCChhhCcCHHHHHHHHhc
Confidence 111 000000 0001111234469999999999999999999999887654
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer |
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.5e-13 Score=124.00 Aligned_cols=262 Identities=16% Similarity=0.169 Sum_probs=188.1
Q ss_pred ceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccc
Q 008820 254 CVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPL 331 (552)
Q Consensus 254 ~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 331 (552)
.-..+.++ |++++.|+..|.|-.+|+.+++....+. -...|.++.|..+.+ ++| ......+.|||-.. ....++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq-~~A-VAQK~y~yvYD~~G-tElHCl 206 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQ-FFA-VAQKKYVYVYDNNG-TELHCL 206 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchH-HHH-hhhhceEEEecCCC-cEEeeh
Confidence 34457777 9999999999999999999999988876 346789999987554 433 44568899998552 223333
Q ss_pred cccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEEC
Q 008820 332 KKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSL 409 (552)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~ 409 (552)
+..... .-..|-|.--+|++++..|.++.-|+.+|+.+..+....+.+..++-+ +..+-+|...|+|.+|..
T Consensus 207 k~~~~v------~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 207 KRHIRV------ARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP 280 (545)
T ss_pred hhcCch------hhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCC
Confidence 322111 112344444578999999999999999999999998888888888877 558889999999999999
Q ss_pred CCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcceeeeeccc-ceEEEEEecCCEEEEEeCCCeEEE
Q 008820 410 SDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHK-GSVFAVFLEGKWLFTGGWDKTVSV 488 (552)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~h~-~~v~~v~~~~~~l~sgs~dg~i~i 488 (552)
...+++..+..| .+.+.+ +++.++|+++++.+.|..++|||++...+....++ -+...++++.+-+++.|....|.|
T Consensus 281 ~skePLvKiLcH-~g~V~s-iAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~i 358 (545)
T KOG1272|consen 281 NSKEPLVKILCH-RGPVSS-IAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQI 358 (545)
T ss_pred CCcchHHHHHhc-CCCcce-EEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeeee
Confidence 998888777666 466666 69999999999999999999999987654433333 345567776666677777789999
Q ss_pred EecC-C--CeeeeeeccCCCcccCcceEEEEEeC--CeEEEEeCCCe
Q 008820 489 QELA-G--DEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGCADRT 530 (552)
Q Consensus 489 wd~~-~--~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~Dg~ 530 (552)
|.=. . +........ ..+...|..+.|.| +.|-.|...|.
T Consensus 359 w~d~~~~s~~~~~pYm~---H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 359 WKDALKGSGHGETPYMN---HRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred ehhhhcCCCCCCcchhh---hccCcccccceeccHHHeeeccccCCc
Confidence 9532 2 111111111 12355788888886 44444444443
|
|
| >KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.7e-14 Score=131.26 Aligned_cols=105 Identities=20% Similarity=0.324 Sum_probs=69.2
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
..+.|||-|||||++.+..+ .|+.|+||||||++..||.+|. ||...-+.++.-+..+..|..-.
T Consensus 188 ~tfvgtp~wmAPEvl~q~~~-------------GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmkvLl~tLqn~pp~~~- 253 (516)
T KOG0582|consen 188 NTFVGTPCWMAPEVLMQQLH-------------GYDFKADIWSFGITACELAHGHAPFSKYPPMKVLLLTLQNDPPTLL- 253 (516)
T ss_pred ccccCcccccChHHhhhccc-------------CccchhhhhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCCCCCcc-
Confidence 78999999999999754433 3678999999999999999999 99654333332112222110000
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
+ .. .+......-..++.+++..||++||.+||+++++.+.
T Consensus 254 --t-~~-------~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlkh 293 (516)
T KOG0582|consen 254 --T-SG-------LDKDEDKKFSKSFREMIALCLVKDPSKRPTASKLLKH 293 (516)
T ss_pred --c-cc-------CChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhcc
Confidence 0 00 0001111112248899999999999999999877663
|
|
| >cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.8e-14 Score=136.41 Aligned_cols=90 Identities=19% Similarity=0.180 Sum_probs=64.5
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
...+.||+.|||||++ . ...++.++|||||||+||||++|+ ||.......+
T Consensus 153 ~~~~~gt~~y~aPE~~------~---------~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~------------- 204 (323)
T cd05575 153 TSTFCGTPEYLAPEVL------R---------KQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTAEM------------- 204 (323)
T ss_pred cccccCChhhcChhhh------c---------CCCCCccccccccchhhhhhhcCCCCCCCCCHHHH-------------
Confidence 5667899999999998 2 245678999999999999999999 9976443311
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhh
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTN 157 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~ 157 (552)
...+...+.........++.+++.+||+.+|.+||++.+
T Consensus 205 --------~~~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~ 243 (323)
T cd05575 205 --------YDNILNKPLRLKPNISVSARHLLEGLLQKDRTKRLGAKD 243 (323)
T ss_pred --------HHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHhCCCCCC
Confidence 111111111111223445899999999999999999763
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr |
| >cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-13 Score=137.63 Aligned_cols=120 Identities=17% Similarity=0.255 Sum_probs=77.6
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
.+|++ |+++.+.......+.....+++.|||||++ ....++.++|||||||+||||++ |+ |
T Consensus 250 ~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~---------------~~~~~~~~~DvwSlGvil~ellt~G~~P 314 (374)
T cd05106 250 VAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESI---------------FDCVYTVQSDVWSYGILLWEIFSLGKSP 314 (374)
T ss_pred eEEEeeceeeeeccCCcceeeccCCCCccceeCHHHh---------------cCCCCCccccHHHHHHHHHHHHhCCCCC
Confidence 35555 555544333222223345567889999998 23457789999999999999997 99 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|......... ....... ...........++.+++.+||+.+|.+||++.++.+.+.++.
T Consensus 315 f~~~~~~~~~----------------~~~~~~~---~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~l~~~l~~~~ 373 (374)
T cd05106 315 YPGILVNSKF----------------YKMVKRG---YQMSRPDFAPPEIYSIMKMCWNLEPTERPTFSQISQLIQRQL 373 (374)
T ss_pred CccccccHHH----------------HHHHHcc---cCccCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHh
Confidence 9663322000 0000000 000111123456999999999999999999999999988754
|
Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti |
| >KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.6e-14 Score=137.24 Aligned_cols=113 Identities=24% Similarity=0.234 Sum_probs=84.4
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.=|.+ |+|+.+++.+. ++.++|||.|||||++ ....++..+|+||+||++|.||+|. ||
T Consensus 177 ~ik~~DFGla~~~~~~~~---~~~~~Gtp~y~APEvl---------------~~~~y~~~~DiWS~Gvi~yiLL~G~~PF 238 (382)
T KOG0032|consen 177 RIKLIDFGLAKFIKPGER---LHTIVGTPEYVAPEVL---------------GGRPYGDEVDVWSIGVILYILLSGVPPF 238 (382)
T ss_pred cEEEeeCCCceEccCCce---EeeecCCccccCchhh---------------cCCCCCcccchhHHHHHHHHHhhCCCCC
Confidence 34444 89999988443 8999999999999999 2256789999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+.+..... ..+....++.....+......+++++.++|.++|..|+++.++.+
T Consensus 239 ~~~~~~~~~-----------------~~i~~~~~~f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~ 292 (382)
T KOG0032|consen 239 WGETEFEIF-----------------LAILRGDFDFTSEPWDDISESAKDFIRKLLEFDPRKRLTAAQALQ 292 (382)
T ss_pred cCCChhHHH-----------------HHHHcCCCCCCCCCccccCHHHHHHHHHhcccCcccCCCHHHHhc
Confidence 776533111 111111123344445555666999999999999999999887666
|
|
| >cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.9e-14 Score=135.70 Aligned_cols=90 Identities=20% Similarity=0.195 Sum_probs=64.0
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
...+.||+.|||||++ . ...++.++|||||||+||||++|+ ||...+...+.
T Consensus 153 ~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~------------ 205 (320)
T cd05590 153 TSTFCGTPDYIAPEIL------Q---------EMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDDLF------------ 205 (320)
T ss_pred ccccccCccccCHHHH------c---------CCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHH------------
Confidence 5667899999999999 2 245678999999999999999999 99764433111
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhh
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTN 157 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~ 157 (552)
..+.............++.+++.+||+.+|.+||++.+
T Consensus 206 ---------~~i~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~ 243 (320)
T cd05590 206 ---------EAILNDEVVYPTWLSQDAVDILKAFMTKNPTMRLGSLT 243 (320)
T ss_pred ---------HHHhcCCCCCCCCCCHHHHHHHHHHcccCHHHCCCCCC
Confidence 11100000111123445889999999999999999744
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal |
| >cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.4e-14 Score=135.84 Aligned_cols=88 Identities=20% Similarity=0.209 Sum_probs=62.9
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
...+.||+.|||||++ . ...++.++|||||||+||||+||+ ||.......+.
T Consensus 158 ~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~~~~------------ 210 (323)
T cd05616 158 TKTFCGTPDYIAPEII------A---------YQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELF------------ 210 (323)
T ss_pred cccCCCChhhcCHHHh------c---------CCCCCCccchhchhHHHHHHHhCCCCCCCCCHHHHH------------
Confidence 4567899999999999 2 355678999999999999999999 99764433111
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcch
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~ 155 (552)
..+.. ...........++.+++.+||+.+|.+|++.
T Consensus 211 -----~~i~~----~~~~~p~~~s~~~~~li~~~l~~~p~~R~~~ 246 (323)
T cd05616 211 -----QSIME----HNVAYPKSMSKEAVAICKGLMTKHPGKRLGC 246 (323)
T ss_pred -----HHHHh----CCCCCCCcCCHHHHHHHHHHcccCHHhcCCC
Confidence 01111 0111111234458899999999999999985
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.7e-12 Score=120.83 Aligned_cols=192 Identities=16% Similarity=0.227 Sum_probs=133.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEE----eCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccC
Q 008820 262 GGFLFSSSFDKSIHVWSLKDFSHVHTF----KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEE 337 (552)
Q Consensus 262 ~~~l~s~s~dg~I~iwd~~~~~~~~~~----~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 337 (552)
+--++.|-.-|.|.+.|....+..+.+ .-....|+++.|.|.+..+++.+-.+|.+.++|........
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t-------- 256 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGAT-------- 256 (636)
T ss_pred CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCC--------
Confidence 445777777788888876542221111 11347899999999999999999999999999874211000
Q ss_pred CCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeCCCcEEEEECCCCcee
Q 008820 338 KDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLSDHSLL 415 (552)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~~~~~~ 415 (552)
.......+++..+.....-+. .+..++..+.--.+.|+..+|+ ++ +|++.+.||.+||||..+.+++
T Consensus 257 -----~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLl 325 (636)
T KOG2394|consen 257 -----APSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELL 325 (636)
T ss_pred -----CCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHH
Confidence 001122234444443322111 1224444444445689999999 44 9999999999999999988776
Q ss_pred EEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeC--CcceeeeecccceEEEEEecC
Q 008820 416 TVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFMKSMQTHKGSVFAVFLEG 474 (552)
Q Consensus 416 ~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~--~~~~~~~~~h~~~v~~v~~~~ 474 (552)
..++.- -+...+ ++|+|||++|++|++|--|.||.. ++.+..-++|..+|..++||.
T Consensus 326 g~mkSY-FGGLLC-vcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 326 GVMKSY-FGGLLC-VCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHHHhh-ccceEE-EEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 555443 233444 699999999999999999999985 456777789999999999986
|
|
| >cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.5e-14 Score=133.67 Aligned_cols=96 Identities=16% Similarity=0.136 Sum_probs=64.9
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDY 96 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~ 96 (552)
|+++.+... .....||+.|||||++ .+ ...+.++|||||||+||+|++|+ ||.......
T Consensus 146 g~~~~~~~~-----~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~~~ 205 (291)
T cd05612 146 GFAKKLRDR-----TWTLCGTPEYLAPEVI------QS---------KGHNKAVDWWALGILIYEMLVGYPPFFDDNPFG 205 (291)
T ss_pred CcchhccCC-----cccccCChhhcCHHHH------cC---------CCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 555555433 2356799999999998 22 44578999999999999999999 997644331
Q ss_pred hhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcc
Q 008820 97 IRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (552)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~ 154 (552)
+ ...+..............+.+++.+||+.+|.+|++
T Consensus 206 ~---------------------~~~i~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~ 242 (291)
T cd05612 206 I---------------------YEKILAGKLEFPRHLDLYAKDLIKKLLVVDRTRRLG 242 (291)
T ss_pred H---------------------HHHHHhCCcCCCccCCHHHHHHHHHHcCCCHHHccC
Confidence 1 011100000111122345889999999999999997
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.4e-11 Score=106.82 Aligned_cols=265 Identities=14% Similarity=0.152 Sum_probs=162.5
Q ss_pred CCcEEEEeCCCCeEEE--EE-eCCCCCeEEEEEe--cC-CCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCcee-e
Q 008820 271 DKSIHVWSLKDFSHVH--TF-KGHDHKVMAVVYV--DE-DQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRY-S 343 (552)
Q Consensus 271 dg~I~iwd~~~~~~~~--~~-~~h~~~v~~v~~~--~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~ 343 (552)
-|.+.+|++...+... ++ ..-...+..+.|. +. +...++-+..+|.|.++..........++......-... .
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 3567777776544332 11 1233456666665 22 333567777889999998765443333333332222111 2
Q ss_pred eEEEEeeCCCEEEEeeCCCcEEEEECCCCcee--EEecCCCCCeEEEEEe---CCEEEEEeCCCcEEEEECC-CCceeEE
Q 008820 344 GIHALTTSGRYLYTGSGDRTIKAWSLLDGTLS--CTMSGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLS-DHSLLTV 417 (552)
Q Consensus 344 ~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~-~~~~~~~ 417 (552)
-...+++.+..++++..+|.+.+-+....... +..+.|.-++....|+ ++.+++|+.|+.+..||+| .++.+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 23456677888999999999997766555443 4788999999999998 6699999999999999999 3444444
Q ss_pred -EecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcceeeeec--ccceEEEEEe---cCCEEEEEeCCCeEEEEec
Q 008820 418 -LEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQT--HKGSVFAVFL---EGKWLFTGGWDKTVSVQEL 491 (552)
Q Consensus 418 -~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~--h~~~v~~v~~---~~~~l~sgs~dg~i~iwd~ 491 (552)
.+.| ...+.++.+-.|.+.++++|+.|..|++||++..-+.+.. -.+.|+.+.. ....|+.+..-.-.+|-+.
T Consensus 205 n~kvH-~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~ 283 (339)
T KOG0280|consen 205 NSKVH-TSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDS 283 (339)
T ss_pred cceee-ecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEe
Confidence 2333 3445565666778899999999999999998754443321 2367777764 2333344444455677777
Q ss_pred CCCeeeeeeccCCCcccCcceEEEEEe--CCeEEEEe-CCCeEE-EEEe
Q 008820 492 AGDEFEEDVIPTGAIPCGSVITALLYW--QGKLFVGC-ADRTVK-IALC 536 (552)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s-~Dg~v~-iw~~ 536 (552)
+.+.............+.+.+..-.|. +..++|++ .|..++ +|-.
T Consensus 284 ~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 284 SDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred cccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeee
Confidence 655333211111111223444444443 23477765 577755 7753
|
|
| >cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8 | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-13 Score=132.89 Aligned_cols=76 Identities=25% Similarity=0.347 Sum_probs=51.7
Q ss_pred EEecchhhhhhhhhcc--cccccccccch-hhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhh
Q 008820 2 ILVMGRRVTKSVAKVG--CVGSRICDKEV-GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVAC 78 (552)
Q Consensus 2 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~ 78 (552)
||+.+........|++ |+|+.+..... ..-.....||+.|||||++ .| ...++.++|||||||
T Consensus 139 il~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~ 204 (317)
T cd07868 139 ILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELL------LG--------ARHYTKAIDIWAIGC 204 (317)
T ss_pred EEEecCCCCcCcEEEeecCceeccCCCCccccccCCccccccccCCHHH------cC--------CCCcCchhhHHHHHH
Confidence 3444433333456676 66665543221 1124568899999999998 22 134578999999999
Q ss_pred hhhhhhhCC-CchH
Q 008820 79 ILLSLLIGE-QFTK 91 (552)
Q Consensus 79 ~l~~lltg~-pf~~ 91 (552)
++|||++|+ ||..
T Consensus 205 il~el~~g~~~f~~ 218 (317)
T cd07868 205 IFAELLTSEPIFHC 218 (317)
T ss_pred HHHHHHhCCCCccC
Confidence 999999999 9953
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p |
| >PTZ00283 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-13 Score=142.55 Aligned_cols=113 Identities=17% Similarity=0.193 Sum_probs=76.6
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.+|+. |+++.+...........+.||+.|||||++ . ...++.++|||||||+||||++|+ ||
T Consensus 181 ~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~------~---------~~~~s~k~DVwSlGvilyeLltG~~Pf 245 (496)
T PTZ00283 181 LVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIW------R---------RKPYSKKADMFSLGVLLYELLTLKRPF 245 (496)
T ss_pred CEEEEecccCeeccccccccccccccCCcceeCHHHh------C---------CCCCCcHHHHHHHHHHHHHHHHCCCCC
Confidence 35565 666655443222234567899999999999 2 255778999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHH-HHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTY-LLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
.......+. ..... ...........++.+++.+||+.+|.+||++.++.+.
T Consensus 246 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~RPs~~ell~~ 297 (496)
T PTZ00283 246 DGENMEEVM---------------------HKTLAGRYDPLPPSISPEMQEIVTALLSSDPKRRPSSSKLLNM 297 (496)
T ss_pred CCCCHHHHH---------------------HHHhcCCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHhC
Confidence 765433110 00000 0001112234469999999999999999999877653
|
|
| >PTZ00267 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-13 Score=142.07 Aligned_cols=113 Identities=19% Similarity=0.233 Sum_probs=76.3
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+++.+...........+.||+.|||||++ . ...++.++|||||||+||||++|+ ||
T Consensus 207 ~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~------~---------~~~~~~~~Dv~slG~~l~el~tg~~Pf 271 (478)
T PTZ00267 207 IIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELW------E---------RKRYSKKADMWSLGVILYELLTLHRPF 271 (478)
T ss_pred cEEEEeCcCceecCCccccccccccCCCccccCHhHh------C---------CCCCCcHHhHHHHHHHHHHHHhCCCCC
Confidence 34555 677766654433335678899999999998 2 355778999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.......+. ....... ..+.......++.+++.+||+.+|.+||++.++..
T Consensus 272 ~~~~~~~~~----------------~~~~~~~----~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~~~l~ 322 (478)
T PTZ00267 272 KGPSQREIM----------------QQVLYGK----YDPFPCPVSSGMKALLDPLLSKNPALRPTTQQLLH 322 (478)
T ss_pred CCCCHHHHH----------------HHHHhCC----CCCCCccCCHHHHHHHHHHhccChhhCcCHHHHHh
Confidence 764332110 0000000 00011123345899999999999999999887654
|
|
| >cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-13 Score=134.30 Aligned_cols=89 Identities=20% Similarity=0.208 Sum_probs=62.9
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.+.+.||+.|||||++ . ...++.++|||||||+||||++|+ ||.......+.
T Consensus 158 ~~~~~g~~~y~aPE~~------~---------~~~~~~~~DiwslG~il~el~~G~~pf~~~~~~~~~------------ 210 (324)
T cd05589 158 TSTFCGTPEFLAPEVL------T---------ETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEEVF------------ 210 (324)
T ss_pred ccccccCccccCHhHh------c---------CCCCCcccchhhHHHHHHHHHhCCCCCCCCCHHHHH------------
Confidence 4568899999999998 2 245678999999999999999999 99764433110
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchh
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~ 156 (552)
..+..............+.+++.+||+.+|.+||+..
T Consensus 211 ---------~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~ 247 (324)
T cd05589 211 ---------DSIVNDEVRYPRFLSREAISIMRRLLRRNPERRLGSG 247 (324)
T ss_pred ---------HHHHhCCCCCCCCCCHHHHHHHHHHhhcCHhHcCCCC
Confidence 1110000011112344588999999999999999754
|
Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved |
| >cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6 | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-13 Score=132.82 Aligned_cols=125 Identities=17% Similarity=0.149 Sum_probs=71.8
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhh-
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELID- 95 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~- 95 (552)
|+++...... ......||+.|||||++ . ...++.++|||||||+||||++|+ ||.+....
T Consensus 155 g~~~~~~~~~---~~~~~~~~~~y~aPE~~------~---------~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~ 216 (290)
T cd07862 155 GLARIYSFQM---ALTSVVVTLWYRAPEVL------L---------QSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVD 216 (290)
T ss_pred cceEeccCCc---ccccccccccccChHHH------h---------CCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHH
Confidence 4454443332 25677899999999998 2 245678999999999999999999 99653221
Q ss_pred ---hhhhccccCCCchhhhh-hhhHHHHH-HHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 96 ---YIRCVSTKASDDNIACL-GMYMAWME-KVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 96 ---~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+........+..|... ........ ..........+.....+.+++.+||+.+|++||++.++.+
T Consensus 217 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~ 286 (290)
T cd07862 217 QLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 286 (290)
T ss_pred HHHHHHHHhCCCChhhchhhhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhc
Confidence 11111111112122100 00000000 0000001111123345889999999999999999887654
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla |
| >cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-13 Score=133.33 Aligned_cols=101 Identities=19% Similarity=0.172 Sum_probs=67.7
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDY 96 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~ 96 (552)
|+++.....+. ....+.||+.|||||++ .+ ..++.++|||||||++|||++|+ ||.+.....
T Consensus 141 g~a~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DvwslG~il~ell~G~~Pf~~~~~~~ 203 (316)
T cd05592 141 GMCKENMNGEG--KASTFCGTPDYIAPEIL------KG---------QKYNESVDWWSFGVLLYEMLIGQSPFHGEDEDE 203 (316)
T ss_pred cCCeECCCCCC--ccccccCCccccCHHHH------cC---------CCCCCcccchhHHHHHHHHHhCCCCCCCCCHHH
Confidence 55554333222 25567899999999999 22 45678999999999999999999 997644331
Q ss_pred hhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchh
Q 008820 97 IRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (552)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~ 156 (552)
+. ..+.. ...........++.+++.+||+.+|.+||++.
T Consensus 204 ~~-----------------~~i~~----~~~~~~~~~~~~~~~ll~~~l~~~P~~R~~~~ 242 (316)
T cd05592 204 LF-----------------DSILN----DRPHFPRWISKEAKDCLSKLFERDPTKRLGVD 242 (316)
T ss_pred HH-----------------HHHHc----CCCCCCCCCCHHHHHHHHHHccCCHHHcCCCh
Confidence 11 00000 00011112334588999999999999999864
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.1e-14 Score=139.58 Aligned_cols=113 Identities=18% Similarity=0.345 Sum_probs=76.6
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
-|+. |-+||+-+.. +.+-.|.||..|||||++- .| ...++.++|||||||++.||.||+ ||-
T Consensus 715 lKISDFGTsKRLAgin--P~TETFTGTLQYMAPEvID-----qG--------~RGYG~aADIWS~GCT~vEMATGrPPF~ 779 (1226)
T KOG4279|consen 715 LKISDFGTSKRLAGIN--PCTETFTGTLQYMAPEVID-----QG--------PRGYGKAADIWSFGCTMVEMATGRPPFV 779 (1226)
T ss_pred EEecccccchhhccCC--ccccccccchhhhChHhhc-----cC--------CcCCCchhhhhhccceeEeeccCCCCee
Confidence 3444 5577777664 4578899999999999992 22 344678999999999999999999 994
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHH-HHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMA-WMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.--.++- ++.+. .++.-|++|+. ...+.+.+|.+|+..+|..||++.++..
T Consensus 780 ElgspqA---------------AMFkVGmyKvHP~iPee----lsaeak~FilrcFepd~~~R~sA~~LL~ 831 (1226)
T KOG4279|consen 780 ELGSPQA---------------AMFKVGMYKVHPPIPEE----LSAEAKNFILRCFEPDPCDRPSAKDLLQ 831 (1226)
T ss_pred ecCChhH---------------hhhhhcceecCCCCcHH----HHHHHHHHHHHHcCCCcccCccHHHhcc
Confidence 3211110 11111 11111222222 2335889999999999999999887554
|
|
| >cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2 | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-13 Score=133.86 Aligned_cols=89 Identities=19% Similarity=0.223 Sum_probs=63.9
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.+.+.||+.|||||++ . ...++.++|||||||+||||++|+ ||...+...+
T Consensus 153 ~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~------------- 204 (321)
T cd05603 153 TSTFCGTPEYLAPEVL------R---------KEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDVSQM------------- 204 (321)
T ss_pred cccccCCcccCCHHHh------c---------CCCCCCcCcccccchhhhhhhcCCCCCCCCCHHHH-------------
Confidence 4667899999999998 2 245678999999999999999999 9976543311
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchh
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~ 156 (552)
...+...+..........+.+++.+||+.+|.+|++..
T Consensus 205 --------~~~i~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~ 242 (321)
T cd05603 205 --------YDNILHKPLQLPGGKTVAACDLLVGLLHKDQRRRLGAK 242 (321)
T ss_pred --------HHHHhcCCCCCCCCCCHHHHHHHHHHccCCHhhcCCCC
Confidence 11111111111122344588999999999999999864
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. |
| >cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-13 Score=133.67 Aligned_cols=120 Identities=16% Similarity=0.192 Sum_probs=77.7
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
+|+. |+++.+.......-.+...|++.|||||++ . ...++.++|||||||+||||++ |. ||
T Consensus 212 vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~------~---------~~~~~~~~Di~SlGv~l~el~t~g~~p~ 276 (337)
T cd05054 212 VKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESI------F---------DKVYTTQSDVWSFGVLLWEIFSLGASPY 276 (337)
T ss_pred EEEeccccchhcccCcchhhccCCCCCccccCcHHh------c---------CCCCCccccHHHHHHHHHHHHHcCCCCC
Confidence 4444 455554333222224456778899999998 2 3556789999999999999998 99 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhhc
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~~ 167 (552)
.+...... . ........ ..........++.+++.+|++.+|++||++.++.+.+..++.
T Consensus 277 ~~~~~~~~-------------~---~~~~~~~~---~~~~~~~~~~~~~~l~~~cl~~~p~~RPs~~ell~~l~~~~~ 335 (337)
T cd05054 277 PGVQIDEE-------------F---CRRLKEGT---RMRAPEYATPEIYSIMLDCWHNNPEDRPTFSELVEILGDLLQ 335 (337)
T ss_pred CCCCccHH-------------H---HHHHhccC---CCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 65221100 0 00000000 000111234568899999999999999999999999887763
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto |
| >PTZ00263 protein kinase A catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-13 Score=134.61 Aligned_cols=101 Identities=18% Similarity=0.131 Sum_probs=67.4
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
+|+. |+++.+... ...+.||+.|||||++ .+ ...+.++|||||||+||||++|+ ||.
T Consensus 157 ~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~elltg~~pf~ 216 (329)
T PTZ00263 157 VKVTDFGFAKKVPDR-----TFTLCGTPEYLAPEVI------QS---------KGHGKAVDWWTMGVLLYEFIAGYPPFF 216 (329)
T ss_pred EEEeeccCceEcCCC-----cceecCChhhcCHHHH------cC---------CCCCCcceeechHHHHHHHHcCCCCCC
Confidence 4555 566655443 2346899999999999 22 44578999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcch
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~ 155 (552)
......+ .+.+..............+.+++.+||+.+|.+|++.
T Consensus 217 ~~~~~~~---------------------~~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~ 260 (329)
T PTZ00263 217 DDTPFRI---------------------YEKILAGRLKFPNWFDGRARDLVKGLLQTDHTKRLGT 260 (329)
T ss_pred CCCHHHH---------------------HHHHhcCCcCCCCCCCHHHHHHHHHHhhcCHHHcCCC
Confidence 5432211 0111000000111123358899999999999999984
|
|
| >cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-13 Score=134.72 Aligned_cols=106 Identities=14% Similarity=0.119 Sum_probs=70.1
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.....+. ....+.||+.|||||++ . ....+.++|||||||+||||++|+ ||.
T Consensus 137 ~kL~Dfg~~~~~~~~~~--~~~~~~g~~~y~aPE~~------~---------~~~~~~~~DiwslG~il~el~tg~~p~~ 199 (318)
T cd05582 137 IKLTDFGLSKESIDHEK--KAYSFCGTVEYMAPEVV------N---------RRGHTQSADWWSFGVLMFEMLTGSLPFQ 199 (318)
T ss_pred EEEeeccCCcccCCCCC--ceecccCChhhcCHHHH------c---------CCCCCCccceeccceEeeeeccCCCCCC
Confidence 4455 55555443322 24567899999999998 2 244568999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhh
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTN 157 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~ 157 (552)
......+. ..+..............+.+++.+||+.+|.+||++.+
T Consensus 200 ~~~~~~~~---------------------~~i~~~~~~~p~~~~~~~~~li~~~l~~~P~~R~~a~~ 245 (318)
T cd05582 200 GKDRKETM---------------------TMILKAKLGMPQFLSPEAQSLLRALFKRNPANRLGAGP 245 (318)
T ss_pred CCCHHHHH---------------------HHHHcCCCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence 64433110 00000000111123345889999999999999999765
|
Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate |
| >KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-13 Score=128.59 Aligned_cols=104 Identities=14% Similarity=0.162 Sum_probs=71.4
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDY 96 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~ 96 (552)
|||-.|..+.. ..+-+||++|||||++ .++.++...|.|||||+||||+-|+ ||...-..
T Consensus 332 GLAvei~~g~~---~~~rvGT~GYMAPEvl---------------~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeK- 392 (591)
T KOG0986|consen 332 GLAVEIPEGKP---IRGRVGTVGYMAPEVL---------------QNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEK- 392 (591)
T ss_pred ceEEecCCCCc---cccccCcccccCHHHH---------------cCCcccCCccHHHHHhHHHHHHcccCchhhhhhh-
Confidence 78877777764 3344999999999999 3466889999999999999999999 99652211
Q ss_pred hhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchh
Q 008820 97 IRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (552)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~ 156 (552)
.. ...+...+.+.+......-+.+++++...+|+++|.+|-...
T Consensus 393 vk----------------~eEvdrr~~~~~~ey~~kFS~eakslc~~LL~Kdp~~RLGcr 436 (591)
T KOG0986|consen 393 VK----------------REEVDRRTLEDPEEYSDKFSEEAKSLCEGLLTKDPEKRLGCR 436 (591)
T ss_pred hh----------------HHHHHHHHhcchhhcccccCHHHHHHHHHHHccCHHHhccCC
Confidence 00 001111122222222222344588999999999999997754
|
|
| >cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2 | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.5e-13 Score=130.36 Aligned_cols=114 Identities=15% Similarity=0.201 Sum_probs=75.0
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
+|++ |+++.+.............+++.|||||++. .+.++.++|||||||+||||++ |. ||
T Consensus 163 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Dv~slG~~l~el~~~g~~p~ 227 (283)
T cd05091 163 VKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIM---------------YGKFSIDSDIWSYGVVLWEVFSYGLQPY 227 (283)
T ss_pred eEecccccccccccchheeeccCccCCccccCHHHHh---------------cCCCCcchhHHHHHHHHHHHHcCCCCCC
Confidence 4555 4555554433322345566789999999982 2456789999999999999998 77 98
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHh-hhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLE-NKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~ 163 (552)
.+.....+ ...+..... .........+.+++.+|++.+|.+||++.++...++
T Consensus 228 ~~~~~~~~---------------------~~~i~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~ 281 (283)
T cd05091 228 CGYSNQDV---------------------IEMIRNRQVLPCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHSRLR 281 (283)
T ss_pred CCCCHHHH---------------------HHHHHcCCcCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHhh
Confidence 65332211 111110000 011123334889999999999999999999888765
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-13 Score=123.38 Aligned_cols=98 Identities=17% Similarity=0.158 Sum_probs=68.6
Q ss_pred ccccc-ccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhh
Q 008820 18 CVGSR-ICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELID 95 (552)
Q Consensus 18 ~~~~~-~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~ 95 (552)
||+|. |+.. .-++.|+|||.|+|||++. ...++...|.|-+||++|||++|+ ||......
T Consensus 313 GLCKE~I~~g---~t~kTFCGTPEYLAPEVle---------------DnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~ 374 (516)
T KOG0690|consen 313 GLCKEEIKYG---DTTKTFCGTPEYLAPEVLE---------------DNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHE 374 (516)
T ss_pred ccchhccccc---ceeccccCChhhcCchhhc---------------cccccceeehhhhhHHHHHHHhccCcccccchh
Confidence 66653 3333 3389999999999999992 245668999999999999999999 99765555
Q ss_pred hhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcc
Q 008820 96 YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (552)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~ 154 (552)
.|. +-+.......+....++.+.++..+|.++|.+|-.
T Consensus 375 kLF---------------------eLIl~ed~kFPr~ls~eAktLLsGLL~kdP~kRLG 412 (516)
T KOG0690|consen 375 KLF---------------------ELILMEDLKFPRTLSPEAKTLLSGLLKKDPKKRLG 412 (516)
T ss_pred HHH---------------------HHHHhhhccCCccCCHHHHHHHHHHhhcChHhhcC
Confidence 331 11100011122224456888999999999999965
|
|
| >cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-13 Score=133.95 Aligned_cols=87 Identities=20% Similarity=0.240 Sum_probs=60.8
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....||+.|||||++ . ....+.++|||||||+||||++|+ ||........
T Consensus 157 ~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslG~il~ell~G~~pf~~~~~~~~------------- 208 (323)
T cd05584 157 THTFCGTIEYMAPEIL------M---------RSGHGKAVDWWSLGALMYDMLTGAPPFTAENRKKT------------- 208 (323)
T ss_pred ccccCCCccccChhhc------c---------CCCCCCcceecccHHHHHHHhcCCCCCCCCCHHHH-------------
Confidence 4557899999999998 2 244568999999999999999999 9976443311
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcc
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~ 154 (552)
...+..............+.+++.+||+.+|.+||+
T Consensus 209 --------~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~ 244 (323)
T cd05584 209 --------IDKILKGKLNLPPYLTPEARDLLKKLLKRNPSSRLG 244 (323)
T ss_pred --------HHHHHcCCCCCCCCCCHHHHHHHHHHcccCHhHcCC
Confidence 000000000111123445889999999999999995
|
Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in |
| >PTZ00266 NIMA-related protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-13 Score=146.35 Aligned_cols=113 Identities=20% Similarity=0.298 Sum_probs=74.4
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p 88 (552)
.++|+. |+++.+.... ....+.||+.|||||++ .+ ....+++++||||||||||||+||+ |
T Consensus 179 ~iVKLsDFGlAr~l~~~s---~~~s~vGTp~YmAPEvL------~g-------e~~~~s~KSDVWSLG~ILYELLTGk~P 242 (1021)
T PTZ00266 179 PIAKIGDFGLSKNIGIES---MAHSCVGTPYYWSPELL------LH-------ETKSYDDKSDMWALGCIIYELCSGKTP 242 (1021)
T ss_pred CceEEccCCccccccccc---cccccCCCccccCHHHH------hc-------cCCCCCchhHHHHHHHHHHHHHHCCCC
Confidence 346666 5565554332 24567899999999998 22 1234678999999999999999999 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
|....... .....+...+.........++.++|.+||+.+|.+||++.++..
T Consensus 243 F~~~~~~~--------------------qli~~lk~~p~lpi~~~S~eL~dLI~~~L~~dPeeRPSa~QlL~ 294 (1021)
T PTZ00266 243 FHKANNFS--------------------QLISELKRGPDLPIKGKSKELNILIKNLLNLSAKERPSALQCLG 294 (1021)
T ss_pred CCcCCcHH--------------------HHHHHHhcCCCCCcCCCCHHHHHHHHHHhcCChhHCcCHHHHhc
Confidence 96432110 00011100111111223456999999999999999999887764
|
|
| >cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-13 Score=134.06 Aligned_cols=87 Identities=17% Similarity=0.239 Sum_probs=60.8
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
...+.||+.|||||++ . ...++.++|||||||+||+|++|+ ||.......+.
T Consensus 152 ~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslGvil~elltG~~Pf~~~~~~~~~------------ 204 (328)
T cd05593 152 MKTFCGTPEYLAPEVL------E---------DNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLF------------ 204 (328)
T ss_pred cccccCCcCccChhhh------c---------CCCCCccCCccccchHHHHHhhCCCCCCCCCHHHHH------------
Confidence 4567899999999998 2 245678999999999999999999 99654333111
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcc
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~ 154 (552)
...... ..........++.+++.+||+.+|.+|++
T Consensus 205 -----~~~~~~----~~~~p~~~~~~~~~li~~~L~~dP~~R~~ 239 (328)
T cd05593 205 -----ELILME----DIKFPRTLSADAKSLLSGLLIKDPNKRLG 239 (328)
T ss_pred -----HHhccC----CccCCCCCCHHHHHHHHHHcCCCHHHcCC
Confidence 000000 00011123345889999999999999984
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate |
| >cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-13 Score=134.79 Aligned_cols=87 Identities=18% Similarity=0.255 Sum_probs=61.2
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
...+.||+.|||||++ . ...++.++|||||||+||||+||+ ||.......+.
T Consensus 153 ~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~~~~------------ 205 (325)
T cd05594 153 MKTFCGTPEYLAPEVL------E---------DNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLF------------ 205 (325)
T ss_pred cccccCCcccCCHHHH------c---------cCCCCCccccccccceeeeeccCCCCCCCCCHHHHH------------
Confidence 4567899999999999 2 245678999999999999999999 99654433111
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcc
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~ 154 (552)
..+............+++.+++.+||+.+|.+|++
T Consensus 206 ---------~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~ 240 (325)
T cd05594 206 ---------ELILMEEIRFPRTLSPEAKSLLSGLLKKDPKQRLG 240 (325)
T ss_pred ---------HHHhcCCCCCCCCCCHHHHHHHHHHhhcCHHHhCC
Confidence 00000000111123446899999999999999973
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien |
| >cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.4e-13 Score=132.47 Aligned_cols=89 Identities=19% Similarity=0.265 Sum_probs=63.3
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
...+.||+.|||||++ .+ ..++.++|||||||+||||++|+ ||.......+.
T Consensus 153 ~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslGvil~el~~g~~Pf~~~~~~~~~------------ 205 (316)
T cd05620 153 ASTFCGTPDYIAPEIL------QG---------LKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELF------------ 205 (316)
T ss_pred eeccCCCcCccCHHHH------cC---------CCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHH------------
Confidence 4567899999999999 22 45678999999999999999999 99764433111
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchh
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~ 156 (552)
...... ..........++.+++.+||+.+|.+|+++.
T Consensus 206 -----~~~~~~----~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~ 242 (316)
T cd05620 206 -----ESIRVD----TPHYPRWITKESKDILEKLFERDPTRRLGVV 242 (316)
T ss_pred -----HHHHhC----CCCCCCCCCHHHHHHHHHHccCCHHHcCCCh
Confidence 011000 0111112344588999999999999999974
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.9e-11 Score=109.83 Aligned_cols=206 Identities=11% Similarity=0.137 Sum_probs=153.9
Q ss_pred eecCccceEEEEEcCCEEEEEeCCCcEEEEeCCCCe----EEEEEeCCCCCeEEEEEecCCCCEEEEEcCC--CcEEEEe
Q 008820 248 LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFS----HVHTFKGHDHKVMAVVYVDEDQPLCISGDSG--GGIFVWS 321 (552)
Q Consensus 248 l~~H~~~V~~l~~s~~~l~s~s~dg~I~iwd~~~~~----~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d--g~i~vwd 321 (552)
..+..++|..++.....|++|-.+|.+.+|..+.+. .+..+..+ ..+..+.-.+....++++|+.. ..+.+||
T Consensus 101 ~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 101 VSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred cccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeee
Confidence 445667788888888899999999999999987432 23333333 5677777788888899999999 8999999
Q ss_pred CCCCCCCccccccccCCCce----eeeEEEEeeC--CCEEEEeeCCCcEEEEECCCC-ceeEEecCCCCCeEEEEEe--C
Q 008820 322 FSFPLGHEPLKKWNEEKDWR----YSGIHALTTS--GRYLYTGSGDRTIKAWSLLDG-TLSCTMSGHKSAVSTLAVC--N 392 (552)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~--~ 392 (552)
++........+......-.- ...-..|-+. ...|++++.-+.+++||.+.+ +++..+.--..+++++... +
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g 259 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG 259 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCC
Confidence 98764332222221111111 1111233333 559999999999999999854 6788888778889998877 5
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc
Q 008820 393 GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK 455 (552)
Q Consensus 393 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 455 (552)
+++++|..-+.+..||++.++..........+.+.+ +..+|...++++++-|..|||+|..+
T Consensus 260 n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirs-ih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 260 NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRS-IHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cEEEEecccchhheecccCceeeccccCCccCCcce-EEEcCCCceEEeeccceeEEEeeccc
Confidence 699999999999999999999887744444566666 57889999999999999999999764
|
|
| >cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-13 Score=133.28 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=62.3
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
...+.||+.|||||++ . ...++.++|||||||+||||++|+ ||...+...+
T Consensus 153 ~~~~~gt~~y~aPE~~------~---------~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~~~~------------- 204 (321)
T cd05591 153 TTTFCGTPDYIAPEIL------Q---------ELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDDL------------- 204 (321)
T ss_pred ccccccCccccCHHHH------c---------CCCCCCccceechhHHHHHHhcCCCCCCCCCHHHH-------------
Confidence 5567899999999998 2 245678999999999999999999 9976543311
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchh
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~ 156 (552)
...+.............++.+++.+||+.+|.+|++..
T Consensus 205 --------~~~i~~~~~~~p~~~~~~~~~ll~~~L~~dp~~R~~~~ 242 (321)
T cd05591 205 --------FESILHDDVLYPVWLSKEAVSILKAFMTKNPNKRLGCV 242 (321)
T ss_pred --------HHHHHcCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCC
Confidence 01110000001111234588999999999999999543
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to |
| >cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-13 Score=132.47 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=62.9
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
...+.||+.|||||++ . ...++.++|||||||+||||++|+ ||.......+.
T Consensus 153 ~~~~~gt~~y~aPE~~------~---------~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~------------ 205 (316)
T cd05619 153 TCTFCGTPDYIAPEIL------L---------GQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEELF------------ 205 (316)
T ss_pred eeeecCCccccCHHHH------c---------CCCCCchhhhhhHHHHHHHHHhCCCCCCCCCHHHHH------------
Confidence 4567899999999998 2 245678999999999999999999 99764433110
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchh
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~ 156 (552)
.......+ ........++.+++.+||+.+|.+||++.
T Consensus 206 -----~~i~~~~~----~~~~~~~~~~~~li~~~l~~~P~~R~~~~ 242 (316)
T cd05619 206 -----QSIRMDNP----CYPRWLTREAKDILVKLFVREPERRLGVK 242 (316)
T ss_pred -----HHHHhCCC----CCCccCCHHHHHHHHHHhccCHhhcCCCh
Confidence 01100000 01112334588999999999999999986
|
Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in |
| >KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.8e-14 Score=132.46 Aligned_cols=109 Identities=20% Similarity=0.202 Sum_probs=75.5
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
-|.+ ||+-.+.+... +..++|+.+|-|||++.++-++ -++.||||||||||-|++|+ ||.
T Consensus 158 VKLTDFGFSNkf~PG~k---L~TsCGSLAYSAPEILLGDsYD--------------APAVDiWSLGVILyMLVCGq~PFq 220 (864)
T KOG4717|consen 158 VKLTDFGFSNKFQPGKK---LTTSCGSLAYSAPEILLGDSYD--------------APAVDIWSLGVILYMLVCGQPPFQ 220 (864)
T ss_pred eEeeeccccccCCCcch---hhcccchhhccCchhhhcCccC--------------CcchhhhHHHHHHHHHHhCCCccc
Confidence 3444 78877777665 8899999999999999433222 26899999999999999999 995
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..+-.. .+.+...-.-.+|.. ...+++++|..||..+|.+|.+.+++..
T Consensus 221 eANDSE--------------TLTmImDCKYtvPsh-------vS~eCrdLI~sMLvRdPkkRAslEeI~s 269 (864)
T KOG4717|consen 221 EANDSE--------------TLTMIMDCKYTVPSH-------VSKECRDLIQSMLVRDPKKRASLEEIVS 269 (864)
T ss_pred cccchh--------------hhhhhhcccccCchh-------hhHHHHHHHHHHHhcCchhhccHHHHhc
Confidence 433220 001111111111222 3335999999999999999999887755
|
|
| >PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-13 Score=134.13 Aligned_cols=100 Identities=16% Similarity=0.167 Sum_probs=66.3
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+... .....||+.|||||++ .+ ..++.++|||||||+||||++|+ ||.
T Consensus 170 ikL~DFG~a~~~~~~-----~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwSlGvil~ell~G~~Pf~ 229 (340)
T PTZ00426 170 IKMTDFGFAKVVDTR-----TYTLCGTPEYIAPEIL------LN---------VGHGKAADWWTLGIFIYEILVGCPPFY 229 (340)
T ss_pred EEEecCCCCeecCCC-----cceecCChhhcCHHHH------hC---------CCCCccccccchhhHHHHHhcCCCCCC
Confidence 4444 556555433 3467899999999999 22 44568999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcc
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~ 154 (552)
..+...+ +..+... ...........+.+++.+||+.+|.+|++
T Consensus 230 ~~~~~~~-----------------~~~i~~~----~~~~p~~~~~~~~~li~~~l~~dp~~R~~ 272 (340)
T PTZ00426 230 ANEPLLI-----------------YQKILEG----IIYFPKFLDNNCKHLMKKLLSHDLTKRYG 272 (340)
T ss_pred CCCHHHH-----------------HHHHhcC----CCCCCCCCCHHHHHHHHHHcccCHHHcCC
Confidence 6443211 0011110 00011112335889999999999999974
|
|
| >KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.7e-14 Score=130.50 Aligned_cols=92 Identities=18% Similarity=0.223 Sum_probs=66.6
Q ss_pred hhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchh
Q 008820 31 FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNI 109 (552)
Q Consensus 31 ~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~ 109 (552)
-.-.|+||-.|+|||+| +| ...+.++|.|+||+.|||||.|. ||.+.+..+
T Consensus 291 RSnSFVGThEYlAPEvI------~G---------~GHgsAVDWWtfGIflYEmLyG~TPFKG~~~~~------------- 342 (459)
T KOG0610|consen 291 RSNSFVGTHEYLAPEVI------RG---------EGHGSAVDWWTFGIFLYEMLYGTTPFKGSNNKE------------- 342 (459)
T ss_pred cccccccccccccceee------ec---------CCCCchhhHHHHHHHHHHHHhCCCCcCCCCchh-------------
Confidence 45679999999999999 44 44568999999999999999999 998866441
Q ss_pred hhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchh
Q 008820 110 ACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (552)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~ 156 (552)
+...+..+.+..|.. ...+..++++|+++|.+||.+|-...
T Consensus 343 ----Tl~NIv~~~l~Fp~~--~~vs~~akDLIr~LLvKdP~kRlg~~ 383 (459)
T KOG0610|consen 343 ----TLRNIVGQPLKFPEE--PEVSSAAKDLIRKLLVKDPSKRLGSK 383 (459)
T ss_pred ----hHHHHhcCCCcCCCC--CcchhHHHHHHHHHhccChhhhhccc
Confidence 111111111222211 13345699999999999999998844
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.4e-11 Score=119.09 Aligned_cols=210 Identities=14% Similarity=0.125 Sum_probs=137.0
Q ss_pred EEeecCccceEEEEEc--CCEEEEEeCC---CcEEEEeCCCCeE--EEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEE
Q 008820 246 KDLQGHRDCVTGLAVG--GGFLFSSSFD---KSIHVWSLKDFSH--VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIF 318 (552)
Q Consensus 246 ~~l~~H~~~V~~l~~s--~~~l~s~s~d---g~I~iwd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~ 318 (552)
..+..|...+.+.+|+ |+.|+.++.+ ..|++||+.+++. +..+.+| ...++|+|++..++++.+.+|.+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence 3466788889999999 8888887654 3699999988754 3333443 346899998887777777888877
Q ss_pred EE--eCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEee-CCCcEEEEECCCC-ceeEEecCCCCCeEEEEEe-C-
Q 008820 319 VW--SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS-GDRTIKAWSLLDG-TLSCTMSGHKSAVSTLAVC-N- 392 (552)
Q Consensus 319 vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs-~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~-~- 392 (552)
+| |+.++.. .....+.. ......++|+|+.|+.++ .+|...+|+++.. .....+ .+.. .+..|+ +
T Consensus 274 Iy~~d~~~~~~----~~lt~~~~--~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG 344 (429)
T PRK01742 274 IYVMGANGGTP----SQLTSGAG--NNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADG 344 (429)
T ss_pred EEEEECCCCCe----EeeccCCC--CcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCC
Confidence 66 4443321 11111111 122357899999766554 5788888876532 222233 3433 456777 3
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeC----CcceeeeecccceEE
Q 008820 393 GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN----DKFMKSMQTHKGSVF 468 (552)
Q Consensus 393 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~----~~~~~~~~~h~~~v~ 468 (552)
+.++..+.++ +.+||+.+++........ . ... ..|+|+|++|+.++.++.+.+|++ ++..+.+..|.+.+.
T Consensus 345 ~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~-~--~~~-~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~ 419 (429)
T PRK01742 345 KTLVMINGDN-VVKQDLTSGSTEVLSSTF-L--DES-PSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVK 419 (429)
T ss_pred CEEEEEcCCC-EEEEECCCCCeEEecCCC-C--CCC-ceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCC
Confidence 3777776654 566999988754322221 1 122 579999999999999998888763 456777777777666
Q ss_pred EEEe
Q 008820 469 AVFL 472 (552)
Q Consensus 469 ~v~~ 472 (552)
..+|
T Consensus 420 ~p~w 423 (429)
T PRK01742 420 FPAW 423 (429)
T ss_pred Cccc
Confidence 6655
|
|
| >cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-13 Score=132.70 Aligned_cols=88 Identities=19% Similarity=0.209 Sum_probs=62.3
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
...+.||+.|||||++ .+ ..++.++|||||||++|+|++|+ ||.......+.
T Consensus 153 ~~~~~g~~~y~aPE~~------~~---------~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~~~~------------ 205 (318)
T cd05570 153 TSTFCGTPDYIAPEIL------SY---------QPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDELF------------ 205 (318)
T ss_pred ccceecCccccCHHHh------cC---------CCCCcchhhhhHHHHHHHHhhCCCCCCCCCHHHHH------------
Confidence 4557899999999999 32 55678999999999999999999 99754433110
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcch
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~ 155 (552)
..+... ..........++.+++.+||+.+|.+||+.
T Consensus 206 -----~~i~~~----~~~~~~~~~~~~~~li~~~l~~dP~~R~s~ 241 (318)
T cd05570 206 -----QSILED----EVRYPRWLSKEAKSILKSFLTKNPEKRLGC 241 (318)
T ss_pred -----HHHHcC----CCCCCCcCCHHHHHHHHHHccCCHHHcCCC
Confidence 000000 000111233458899999999999999998
|
Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re |
| >cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.8e-13 Score=130.55 Aligned_cols=100 Identities=14% Similarity=0.156 Sum_probs=70.0
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNI 109 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~ 109 (552)
.+...|++.|||||++ . ...++.++|||||||++|||+| |+ ||.......+.
T Consensus 182 ~~~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~----------- 235 (291)
T cd05094 182 GGHTMLPIRWMPPESI------M---------YRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVI----------- 235 (291)
T ss_pred CCCCCcceeecChHHh------c---------cCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHH-----------
Confidence 3456788999999998 2 2456789999999999999999 99 98553332110
Q ss_pred hhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 110 ACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
...... .........+..+.+++.+|++.+|.+||++.++.+.+..+.
T Consensus 236 ------~~~~~~---~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~ 283 (291)
T cd05094 236 ------ECITQG---RVLERPRVCPKEVYDIMLGCWQREPQQRLNIKEIYKILHALG 283 (291)
T ss_pred ------HHHhCC---CCCCCCccCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHH
Confidence 000000 000011112345899999999999999999999999888764
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n |
| >cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5 | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-13 Score=130.61 Aligned_cols=131 Identities=20% Similarity=0.224 Sum_probs=73.3
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|++ |+++.+...... ......||+.|||||++ .+ ..++.++|||||||+||||++|+ ||.
T Consensus 139 ~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~------~~---------~~~~~~~DiwslGvil~el~~g~~pf~ 202 (287)
T cd07848 139 LKLCDFGFARNLSEGSNA-NYTEYVATRWYRSPELL------LG---------APYGKAVDMWSVGCILGELSDGQPLFP 202 (287)
T ss_pred EEEeeccCcccccccccc-cccccccccccCCcHHH------cC---------CCCCCchhHHhHHHHHHHHHhCCCCCC
Confidence 4555 556555433221 23467899999999998 22 45678999999999999999999 996
Q ss_pred HHHhh-h---hhhccccCCCchhhhhhhhHHHHHHH-H-----H-HHhhhhcCccccHHHHHHhhcccCCCCCcchhhHH
Q 008820 91 KELID-Y---IRCVSTKASDDNIACLGMYMAWMEKV-T-----Y-LLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVW 159 (552)
Q Consensus 91 ~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~-~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~ 159 (552)
..... . +..+.....+..+..+.......... + . ...........++.+++.+||+.+|.+||++.++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l 282 (287)
T cd07848 203 GESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCL 282 (287)
T ss_pred CCCHHHHHHHHHHhhCCCCHHHHHhhhccchhcccccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHh
Confidence 53221 1 11000100000000000000000000 0 0 00000111234589999999999999999988765
Q ss_pred H
Q 008820 160 K 160 (552)
Q Consensus 160 ~ 160 (552)
+
T Consensus 283 ~ 283 (287)
T cd07848 283 N 283 (287)
T ss_pred c
Confidence 4
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes |
| >cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3 | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-13 Score=132.94 Aligned_cols=91 Identities=14% Similarity=0.138 Sum_probs=64.2
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
...+.||+.|||||++ . ...++.++|||||||+||||++|+ ||.......+.
T Consensus 153 ~~~~~gt~~y~aPE~~------~---------~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~~~------------ 205 (325)
T cd05604 153 TTTFCGTPEYLAPEVI------R---------KQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMY------------ 205 (325)
T ss_pred cccccCChhhCCHHHH------c---------CCCCCCcCccccccceehhhhcCCCCCCCCCHHHHH------------
Confidence 4567899999999999 2 245678999999999999999999 99664433110
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNV 158 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~ 158 (552)
................++.+++.+||+.+|.+||+..+.
T Consensus 206 ---------~~~~~~~~~~~~~~~~~~~~ll~~ll~~~p~~R~~~~~~ 244 (325)
T cd05604 206 ---------DNILHKPLVLRPGASLTAWSILEELLEKDRQRRLGAKED 244 (325)
T ss_pred ---------HHHHcCCccCCCCCCHHHHHHHHHHhccCHHhcCCCCCC
Confidence 111100111111234458899999999999999997643
|
Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.9e-12 Score=120.36 Aligned_cols=172 Identities=19% Similarity=0.268 Sum_probs=118.6
Q ss_pred EEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEee-C-CCEEEEeeCCC
Q 008820 285 VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-S-GRYLYTGSGDR 362 (552)
Q Consensus 285 ~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~sgs~dg 362 (552)
.+.+.||++.|+++.|+.+|. +|++|+.|-.+.|||.-..+....+. ..+.....++ .|-| . .+.+++|..|.
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~KllhsI~---TgHtaNIFsv-KFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHSIS---TGHTANIFSV-KFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred hhhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceeeeee---cccccceeEE-eeeccCCCeEEEeccCcc
Confidence 456789999999999998666 88999999999999987433333222 2222222222 3334 2 34899999999
Q ss_pred cEEEEECCCC----------ceeEEecCCCCCeEEEEEe---CCEEEEEeCCCcEEEEECCCCcee-EE------Ee-cC
Q 008820 363 TIKAWSLLDG----------TLSCTMSGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLL-TV------LE-ED 421 (552)
Q Consensus 363 ~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~-~~------~~-~~ 421 (552)
.|+++|+... .....+..|...|..++.. ++.+.++++||+|+-+|++....- .. +. ..
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 9999999742 3444566788888888887 359999999999999999863211 00 00 00
Q ss_pred CCCceEEEEEEcCC-CCEEEEEECCCcEEEEeCCcceeeee
Q 008820 422 SSGAVSSVLSLTAV-QHTLVVSHESGSIKVWRNDKFMKSMQ 461 (552)
Q Consensus 422 ~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iwd~~~~~~~~~ 461 (552)
..-....++.++|. ..+|++|+.|-..++||.+..+..+.
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~ 238 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFR 238 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCC
Confidence 01111223567765 46899999999999999766555443
|
|
| >PTZ00284 protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-13 Score=140.59 Aligned_cols=114 Identities=15% Similarity=0.158 Sum_probs=67.9
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhh-hhhcc--ccCCCc
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDY-IRCVS--TKASDD 107 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~-~~~~~--~~~~~~ 107 (552)
.+.++||+.|||||++ .| ..++.++|||||||+||||+||+ ||++..... +..+. ....|.
T Consensus 302 ~~~~~gt~~Y~APE~~------~~---------~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~g~~p~ 366 (467)
T PTZ00284 302 RTAIVSTRHYRSPEVV------LG---------LGWMYSTDMWSMGCIIYELYTGKLLYDTHDNLEHLHLMEKTLGRLPS 366 (467)
T ss_pred cccccCCccccCcHHh------hc---------CCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHcCCCCH
Confidence 4568999999999999 22 55778999999999999999999 996533221 11100 111233
Q ss_pred hhhhhhhh---HHHHHH------------HHHHHhh---hhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 108 NIACLGMY---MAWMEK------------VTYLLEN---KFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 108 ~~~~~~~~---~~~~~~------------~~~~~~~---~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.|...... ...... ....... ........+.++|.+||++||.+||++.++.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~ 437 (467)
T PTZ00284 367 EWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQMTT 437 (467)
T ss_pred HHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCCHHHHhc
Confidence 33211000 000000 0000000 00011234779999999999999999988765
|
|
| >cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.6e-13 Score=128.74 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=75.0
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
.+|.. |+++.+.............+++.|||||++ ....++.++|||||||+||||++ |+ |
T Consensus 157 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~---------------~~~~~~~~~DiwslG~il~el~~~g~~p 221 (277)
T cd05036 157 VAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAF---------------LDGIFTSKTDVWSFGVLLWEIFSLGYMP 221 (277)
T ss_pred ceEeccCccccccCCccceecCCCCCccHhhCCHHHH---------------hcCCcCchhHHHHHHHHHHHHHcCCCCC
Confidence 45555 566666443322123344556789999999 23557799999999999999997 88 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHH
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~ 163 (552)
|.......+. ..+... ........+.++.+++.+|++.+|++||++.++.+.+.
T Consensus 222 f~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~ 276 (277)
T cd05036 222 YPGRTNQEVM---------------------EFVTGGGRLDPPKGCPGPVYRIMTDCWQHTPEDRPNFATILERIQ 276 (277)
T ss_pred CCCCCHHHHH---------------------HHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHhh
Confidence 9764433211 000000 00011123345889999999999999999999877653
|
Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well |
| >cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-13 Score=132.94 Aligned_cols=111 Identities=17% Similarity=0.137 Sum_probs=68.8
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
+|+. |+++.+...+.. ....+.||+.|||||++ .+ ....+.++|||||||+||||+||+ ||.
T Consensus 144 ~kl~DfG~~~~~~~~~~~-~~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~elltg~~pf~ 208 (332)
T cd05614 144 VVLTDFGLSKEFLSEEKE-RTYSFCGTIEYMAPEII------RG--------KGGHGKAVDWWSLGILIFELLTGASPFT 208 (332)
T ss_pred EEEeeCcCCccccccCCC-ccccccCCccccCHHHh------cC--------CCCCCCccccccchhhhhhhhcCCCCCC
Confidence 4555 555554333221 23467899999999998 22 123567999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchh
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~ 156 (552)
....... ......................+.+++.+||+.+|.+||+..
T Consensus 209 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~ 257 (332)
T cd05614 209 LEGERNT-----------------QSEVSRRILKCDPPFPSFIGPEAQDLLHKLLRKDPKKRLGAG 257 (332)
T ss_pred CCCCCCC-----------------HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHcCCCHHHcCCCC
Confidence 4321100 001111111111111122344588999999999999999654
|
Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph |
| >cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6 | Back alignment and domain information |
|---|
Probab=99.37 E-value=5e-13 Score=130.54 Aligned_cols=76 Identities=25% Similarity=0.359 Sum_probs=52.0
Q ss_pred EEecchhhhhhhhhcc--cccccccccchh-hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhh
Q 008820 2 ILVMGRRVTKSVAKVG--CVGSRICDKEVG-LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVAC 78 (552)
Q Consensus 2 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~ 78 (552)
||+++........|+. |+++.+...... .......||+.|||||++ .+ ...++.++|||||||
T Consensus 139 il~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwSlG~ 204 (317)
T cd07867 139 ILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELL------LG--------ARHYTKAIDIWAIGC 204 (317)
T ss_pred EEEccCCCCCCcEEEeeccceeccCCCcccccccCcceecccccCcHHh------cC--------CCccCcHHHHHhHHH
Confidence 3454443333345666 666655443221 124567899999999998 22 234578999999999
Q ss_pred hhhhhhhCC-CchH
Q 008820 79 ILLSLLIGE-QFTK 91 (552)
Q Consensus 79 ~l~~lltg~-pf~~ 91 (552)
+||||+||+ ||..
T Consensus 205 il~el~tg~~~f~~ 218 (317)
T cd07867 205 IFAELLTSEPIFHC 218 (317)
T ss_pred HHHHHHhCCCCccc
Confidence 999999999 9953
|
Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as |
| >cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1 | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-13 Score=129.53 Aligned_cols=109 Identities=11% Similarity=0.096 Sum_probs=68.6
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+..... ......||+.|||||++ . ...++.++|||||||+||||++|+ ||.
T Consensus 136 ~~l~dfg~~~~~~~~~~--~~~~~~g~~~y~aPE~~------~---------~~~~~~~~DvwslG~il~el~~g~~pf~ 198 (280)
T cd05608 136 VRISDLGLAVELKDGQS--KTKGYAGTPGFMAPELL------Q---------GEEYDFSVDYFALGVTLYEMIAARGPFR 198 (280)
T ss_pred EEEeeCccceecCCCCc--cccccCCCcCccCHHHh------c---------CCCCCccccHHHHHHHHHHHHhCCCCCC
Confidence 4555 44554443322 13457899999999999 2 255678999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchh
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~ 156 (552)
....... ...........+..........+.+++.+||+.+|.+||+..
T Consensus 199 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~ 247 (280)
T cd05608 199 ARGEKVE-----------------NKELKQRILNDSVTYPDKFSPASKSFCEALLAKDPEKRLGFR 247 (280)
T ss_pred CCCcchh-----------------HHHHHHhhcccCCCCcccCCHHHHHHHHHHhcCCHHHhcCCC
Confidence 5321100 001111111001111112344589999999999999999643
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g |
| >KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.1e-13 Score=130.37 Aligned_cols=130 Identities=20% Similarity=0.226 Sum_probs=82.7
Q ss_pred hhhhhhcc--cccccccccchhhhhhhc-cccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhC
Q 008820 10 TKSVAKVG--CVGSRICDKEVGLFLSDF-LESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG 86 (552)
Q Consensus 10 ~~~~~~~~--~~~~~~~~~~~~~~~~~~-~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg 86 (552)
.+--||+. |||+.....+.. .+.. .||.+|+|||++ ..+.++.|+|||||||+|+||+||
T Consensus 212 ~~~~aKlsDFGLa~~~~~~~~~--~~~~~~gt~gY~~PEy~---------------~~g~lt~KsDVySFGVvllElitg 274 (361)
T KOG1187|consen 212 EDFNAKLSDFGLAKLGPEGDTS--VSTTVMGTFGYLAPEYA---------------STGKLTEKSDVYSFGVVLLELITG 274 (361)
T ss_pred CCCCEEccCccCcccCCccccc--eeeecCCCCccCChhhh---------------ccCCcCcccccccchHHHHHHHhC
Confidence 34568888 777444331221 2233 999999999999 457889999999999999999999
Q ss_pred C-CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhc-C------ccccHHHHHHhhcccCCCCCcchhhH
Q 008820 87 E-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG-S------EFVSLQLMFCQCLNFDPGCRPLLTNV 158 (552)
Q Consensus 87 ~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~l~~~~~~~l~~~p~~R~~~~~~ 158 (552)
+ |.+..... .+.....|.. +..-.....++..+... . ....+..+..+|++.+|..||.|.++
T Consensus 275 r~~~d~~~~~------~~~~l~~w~~---~~~~~~~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~V 345 (361)
T KOG1187|consen 275 RKAVDQSRPR------GELSLVEWAK---PLLEEGKLREIVDPRLKEGEYPDEKEVKKLAELALRCLRPDPKERPTMSQV 345 (361)
T ss_pred CcccCCCCCc------ccccHHHHHH---HHHHCcchhheeCCCccCCCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHH
Confidence 9 88753311 1111223321 11111122222222211 1 12237778889999999999999998
Q ss_pred HHHHHhh
Q 008820 159 WKCIREL 165 (552)
Q Consensus 159 ~~~l~~~ 165 (552)
.+.+..+
T Consensus 346 v~~L~~~ 352 (361)
T KOG1187|consen 346 VKELEGI 352 (361)
T ss_pred HHHHHhh
Confidence 7777544
|
|
| >KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-13 Score=118.48 Aligned_cols=96 Identities=18% Similarity=0.379 Sum_probs=67.5
Q ss_pred ccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhh--h--hhhccccCCCchhhh
Q 008820 37 ESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELID--Y--IRCVSTKASDDNIAC 111 (552)
Q Consensus 37 g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~--~--~~~~~~~~~~~~~~~ 111 (552)
=|..|.|||.+ ..+....+++++|||||||+||+|+.|. ||+..... + ++..+.+
T Consensus 200 Ct~pyRAPELf------------~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgSlaLAv~n~q-------- 259 (302)
T KOG2345|consen 200 CTIPYRAPELF------------NVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGGSLALAVQNAQ-------- 259 (302)
T ss_pred CCCcccCchhe------------ecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCCeEEEeeeccc--------
Confidence 38999999998 2334567889999999999999999999 99774422 1 1111111
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
+ ..|. ....+..+.+++..||+.+|.+||+..++...+..+
T Consensus 260 ---~--------s~P~--~~~yse~l~~lik~mlqvdP~qRP~i~~ll~~~d~L 300 (302)
T KOG2345|consen 260 ---I--------SIPN--SSRYSEALHQLIKSMLQVDPNQRPTIPELLSKLDDL 300 (302)
T ss_pred ---c--------ccCC--CCCccHHHHHHHHHHhcCCcccCCCHHHHHHHHHhh
Confidence 0 0111 111233488999999999999999999887766544
|
|
| >cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.8e-13 Score=132.80 Aligned_cols=118 Identities=16% Similarity=0.225 Sum_probs=75.8
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
.+|+. |+++.+.............+++.|||||++ . ...++.++|||||||+||||++ |. |
T Consensus 252 ~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~------~---------~~~~~~~sDi~slG~~l~ellt~g~~p 316 (375)
T cd05104 252 ITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESI------F---------NCVYTFESDVWSYGILLWEIFSLGSSP 316 (375)
T ss_pred cEEEecCccceeccCcccccccCCCCCCcceeChhHh------c---------CCCCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 45665 556555443322223345567889999998 2 2556789999999999999998 78 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~ 164 (552)
|........ . .+.+.... ..........++.+++.+||+.+|++||++.++.+.+.+
T Consensus 317 ~~~~~~~~~-------------~---~~~~~~~~---~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~l~~ 373 (375)
T cd05104 317 YPGMPVDSK-------------F---YKMIKEGY---RMLSPECAPSEMYDIMKSCWDADPLKRPTFKQIVQLIEQ 373 (375)
T ss_pred CCCCCchHH-------------H---HHHHHhCc---cCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHh
Confidence 965321100 0 00110000 000011223458999999999999999999999888765
|
Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce |
| >cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.3e-13 Score=128.44 Aligned_cols=96 Identities=14% Similarity=0.183 Sum_probs=66.4
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
....+++.|||||++ . ...+++++|||||||++|||++ |+ ||.......+.
T Consensus 182 ~~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~~~~------------ 234 (280)
T cd05049 182 GHTMLPIRWMPPESI------M---------YRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNEEVI------------ 234 (280)
T ss_pred CCCcccceecChhhh------c---------cCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHH------------
Confidence 445678999999998 2 3567789999999999999999 99 99553322110
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~ 163 (552)
....... ...........+.+++.+||+.+|++||++.++.+.+.
T Consensus 235 -----~~~~~~~---~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~ 279 (280)
T cd05049 235 -----ECITQGR---LLQRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHERLQ 279 (280)
T ss_pred -----HHHHcCC---cCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhh
Confidence 0000000 00111123345899999999999999999998877653
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt |
| >cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-13 Score=132.95 Aligned_cols=87 Identities=18% Similarity=0.258 Sum_probs=61.1
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
...+.||+.|||||++ . ...++.++|||||||+||||++|+ ||.......+.
T Consensus 152 ~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~------------ 204 (323)
T cd05595 152 MKTFCGTPEYLAPEVL------E---------DNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLF------------ 204 (323)
T ss_pred cccccCCcCcCCcccc------c---------CCCCCchhchhhhHHHHHHHHhCCCCCCCCCHHHHH------------
Confidence 4567899999999998 2 255678999999999999999999 99654333110
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcc
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~ 154 (552)
................++.+++.+||+.+|.+|+.
T Consensus 205 ---------~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~ 239 (323)
T cd05595 205 ---------ELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLG 239 (323)
T ss_pred ---------HHHhcCCCCCCCCCCHHHHHHHHHHccCCHHHhCC
Confidence 00000000011123445889999999999999984
|
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in |
| >cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B | Back alignment and domain information |
|---|
Probab=99.35 E-value=5e-13 Score=128.52 Aligned_cols=100 Identities=12% Similarity=0.170 Sum_probs=69.1
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNI 109 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~ 109 (552)
.+...|++.|||||++ . ...++.++|||||||++|+|+| |+ ||.......+.
T Consensus 179 ~~~~~~~~~y~aPE~~------~---------~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~~~~----------- 232 (288)
T cd05093 179 GGHTMLPIRWMPPESI------M---------YRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVI----------- 232 (288)
T ss_pred CCCCCccccccCHHHh------c---------cCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHH-----------
Confidence 3455678899999998 2 2456789999999999999999 88 98653322110
Q ss_pred hhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 110 ACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
....... ........+.++.+++.+||+.+|.+||++.++...+..+.
T Consensus 233 ------~~i~~~~---~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~ 280 (288)
T cd05093 233 ------ECITQGR---VLQRPRTCPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLA 280 (288)
T ss_pred ------HHHHcCC---cCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHH
Confidence 0000000 00011123446999999999999999999999988877764
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly |
| >cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.6e-13 Score=131.78 Aligned_cols=89 Identities=20% Similarity=0.177 Sum_probs=62.4
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....||+.|||||++ .+ ..++.++|||||||+||||+||+ ||.......+.
T Consensus 158 ~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslGvil~elltG~~pf~~~~~~~~~------------ 210 (324)
T cd05587 158 TRTFCGTPDYIAPEII------AY---------QPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELF------------ 210 (324)
T ss_pred eeeecCCccccChhhh------cC---------CCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHH------------
Confidence 4467899999999999 22 45678999999999999999999 99764433110
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchh
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~ 156 (552)
..+.. ...........++.+++.+||..+|.+|++..
T Consensus 211 -----~~i~~----~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~ 247 (324)
T cd05587 211 -----QSIME----HNVSYPKSLSKEAVSICKGLLTKHPAKRLGCG 247 (324)
T ss_pred -----HHHHc----CCCCCCCCCCHHHHHHHHHHhhcCHHHcCCCC
Confidence 01111 01111112344588999999999999999863
|
Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.6e-13 Score=125.31 Aligned_cols=100 Identities=21% Similarity=0.218 Sum_probs=70.5
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDY 96 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~ 96 (552)
|++|.---..++ +..|+|||.|||||++ .-..++..+|.||+||+|||||.|+ ||+++....
T Consensus 495 GmcKEni~~~~T--TkTFCGTPdYiAPEIi---------------~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~e 557 (683)
T KOG0696|consen 495 GMCKENIFDGVT--TKTFCGTPDYIAPEII---------------AYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDE 557 (683)
T ss_pred ccccccccCCcc--eeeecCCCcccccceE---------------EecccccchhHHHHHHHHHHHHcCCCCCCCCCHHH
Confidence 555433333333 7899999999999999 2245667899999999999999999 998876552
Q ss_pred hhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcch
Q 008820 97 IRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (552)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~ 155 (552)
| .+.+.++....| ...+.+..++....|.+.|.+|-..
T Consensus 558 l-----------------F~aI~ehnvsyP----KslSkEAv~ickg~ltK~P~kRLGc 595 (683)
T KOG0696|consen 558 L-----------------FQAIMEHNVSYP----KSLSKEAVAICKGLLTKHPGKRLGC 595 (683)
T ss_pred H-----------------HHHHHHccCcCc----ccccHHHHHHHHHHhhcCCccccCC
Confidence 2 333433332222 2234457788888999999999664
|
|
| >KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.4e-13 Score=129.62 Aligned_cols=113 Identities=20% Similarity=0.337 Sum_probs=77.0
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
+-||- |-++..+++.. .-.|.||.+|||||+| .+....+|+|||||||+|+|||||. ||
T Consensus 250 ~VKIsDFGTS~e~~~~ST---kMSFaGTVaWMAPEvI---------------rnePcsEKVDIwSfGVVLWEmLT~EiPY 311 (904)
T KOG4721|consen 250 VVKISDFGTSKELSDKST---KMSFAGTVAWMAPEVI---------------RNEPCSEKVDIWSFGVVLWEMLTGEIPY 311 (904)
T ss_pred eEEeccccchHhhhhhhh---hhhhhhhHhhhCHHHh---------------hcCCcccccceehhHHHHHHHHhcCCCc
Confidence 44555 55677777743 6679999999999999 3467789999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l 162 (552)
..-....|+ |.+-..... ..+|.. .+.-++-++.+|++..|..||+..++...+
T Consensus 312 kdVdssAII-------------wGVGsNsL~--LpvPst----cP~GfklL~Kqcw~sKpRNRPSFrqil~Hl 365 (904)
T KOG4721|consen 312 KDVDSSAII-------------WGVGSNSLH--LPVPST----CPDGFKLLLKQCWNSKPRNRPSFRQILLHL 365 (904)
T ss_pred cccchheeE-------------EeccCCccc--ccCccc----CchHHHHHHHHHHhcCCCCCccHHHHHHHH
Confidence 653333222 211000000 001111 122388899999999999999987665544
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.9e-09 Score=106.01 Aligned_cols=262 Identities=14% Similarity=0.063 Sum_probs=168.7
Q ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccC
Q 008820 258 LAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEE 337 (552)
Q Consensus 258 l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 337 (552)
+...++.++.++.+|.+..+|.++|+.+.+.+.......+.... ++ .++.++.++.+..+|..+++...........
T Consensus 116 ~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~--~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~ 192 (394)
T PRK11138 116 VTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS--DG-LVLVHTSNGMLQALNESDGAVKWTVNLDVPS 192 (394)
T ss_pred cEEECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeecCCCCc
Confidence 34457788888899999999999999998876543221122221 22 5567788899999999888765444321110
Q ss_pred CC--ceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCC-----------CeEEEEEeCCEEEEEeCCCcE
Q 008820 338 KD--WRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKS-----------AVSTLAVCNGVLYSGSRDGTI 404 (552)
Q Consensus 338 ~~--~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~-----------~v~~l~~~~~~l~s~~~dg~i 404 (552)
.. ....++ ..+..++.++.+|.+..+|..+|+.++....... ...+....++.++.++.+|.+
T Consensus 193 ~~~~~~~sP~----v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l 268 (394)
T PRK11138 193 LTLRGESAPA----TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNL 268 (394)
T ss_pred ccccCCCCCE----EECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeE
Confidence 00 000111 1234577788899999999999988776532110 012223347788888899999
Q ss_pred EEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcceeeeecc--c-ceEEEEEecCCEEEEEe
Q 008820 405 RLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTH--K-GSVFAVFLEGKWLFTGG 481 (552)
Q Consensus 405 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~h--~-~~v~~v~~~~~~l~sgs 481 (552)
..+|..+|+.+........ .. ....+..++.++.+|.+..+|..+....++.. . ....+....+..|+.++
T Consensus 269 ~ald~~tG~~~W~~~~~~~---~~---~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~ 342 (394)
T PRK11138 269 VALDLRSGQIVWKREYGSV---ND---FAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGD 342 (394)
T ss_pred EEEECCCCCEEEeecCCCc---cC---cEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEe
Confidence 9999999998776643211 11 11246678888889999999965433332211 1 11122223577888899
Q ss_pred CCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEe
Q 008820 482 WDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALC 536 (552)
Q Consensus 482 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~ 536 (552)
.||.+++.|..+++......... ........+.+++|+.++.||.|+.++.
T Consensus 343 ~~G~l~~ld~~tG~~~~~~~~~~----~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 343 SEGYLHWINREDGRFVAQQKVDS----SGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCEEEEEECCCCCEEEEEEcCC----CcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 99999999999988776554321 1122233445789999999999998764
|
|
| >PTZ00036 glycogen synthase kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.2e-13 Score=135.12 Aligned_cols=131 Identities=15% Similarity=0.202 Sum_probs=74.9
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+|+.+..... .....||+.|||||++ .| ...++.++|||||||+||||+||+ ||
T Consensus 209 ~vkL~DFGla~~~~~~~~---~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwSlGvil~elltG~~pf 271 (440)
T PTZ00036 209 TLKLCDFGSAKNLLAGQR---SVSYICSRFYRAPELM------LG--------ATNYTTHIDLWSLGCIIAEMILGYPIF 271 (440)
T ss_pred ceeeeccccchhccCCCC---cccCCCCcCccCHHHh------cC--------CCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence 45666 66766654332 3457899999999998 22 234678999999999999999999 99
Q ss_pred hHHHhh-hh---hhccccCCCchhhhh-hhhHHH-HHHH--HHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELID-YI---RCVSTKASDDNIACL-GMYMAW-MEKV--TYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~-~~---~~~~~~~~~~~~~~~-~~~~~~-~~~~--~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+.... .+ ..+.+......+... ..+... ...+ .............++.+++.+||+++|.+||++.++..
T Consensus 272 ~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~ 350 (440)
T PTZ00036 272 SGQSSVDQLVRIIQVLGTPTEDQLKEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALA 350 (440)
T ss_pred CCCChHHHHHHHHHHhCCCCHHHHHHhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhC
Confidence 654322 11 100111000000000 000000 0000 00000011123446889999999999999999887654
|
|
| >cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.7e-13 Score=131.07 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=63.4
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
...+.||+.|||||++ . ...++.++|||||||+||||++|+ ||........ .
T Consensus 153 ~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~-------~----- 205 (327)
T cd05617 153 TSTFCGTPNYIAPEIL------R---------GEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPD-------M----- 205 (327)
T ss_pred eecccCCcccCCHHHH------C---------CCCCCchheeehhHHHHHHHHhCCCCCCccCCCcc-------c-----
Confidence 4567899999999999 2 255678999999999999999999 9964221100 0
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchh
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~ 156 (552)
.............+..........+.+++.+||+.+|.+|++..
T Consensus 206 --~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~ 249 (327)
T cd05617 206 --NTEDYLFQVILEKPIRIPRFLSVKASHVLKGFLNKDPKERLGCQ 249 (327)
T ss_pred --ccHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCC
Confidence 00011111111111111222344588999999999999999864
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways |
| >cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.7e-13 Score=130.21 Aligned_cols=89 Identities=17% Similarity=0.173 Sum_probs=62.5
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
...+.||+.|||||++ . ...++.++|||||||+||||+||+ ||.......+
T Consensus 158 ~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~~------------- 209 (323)
T cd05615 158 TRTFCGTPDYIAPEII------A---------YQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDEL------------- 209 (323)
T ss_pred ccCccCCccccCHHHH------c---------CCCCCCccchhhhHHHHHHHHhCCCCCCCCCHHHH-------------
Confidence 4567799999999999 2 245678999999999999999999 9976433311
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchh
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~ 156 (552)
...+.............++.+++.+||+++|.+|++..
T Consensus 210 --------~~~i~~~~~~~p~~~~~~~~~li~~~l~~~p~~R~~~~ 247 (323)
T cd05615 210 --------FQSIMEHNVSYPKSLSKEAVSICKGLMTKHPSKRLGCG 247 (323)
T ss_pred --------HHHHHhCCCCCCccCCHHHHHHHHHHcccCHhhCCCCC
Confidence 01111111111112344588999999999999999854
|
Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a |
| >cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-13 Score=144.32 Aligned_cols=98 Identities=21% Similarity=0.217 Sum_probs=67.3
Q ss_pred hhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchh
Q 008820 31 FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNI 109 (552)
Q Consensus 31 ~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~ 109 (552)
....++||+.|||||++ .| ..+++++|||||||+||||+||+ ||.+.....+.
T Consensus 536 ~~~~~vGT~~Y~APE~l------~~---------~~~~~~~DiwSlG~il~ElltG~~pf~~~~~~~~~----------- 589 (669)
T cd05610 536 EGERILGTPDYLAPELL------LG---------KPHGPAVDWWALGVCLFEFLTGIPPFNDETPQQVF----------- 589 (669)
T ss_pred cCCceeeCccccCHHHc------CC---------CCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH-----------
Confidence 35567999999999999 33 45678999999999999999999 99764433111
Q ss_pred hhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 110 ACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
..+.......+.. .......+.+++.+||..+|.+||++.++.+.
T Consensus 590 ------~~il~~~~~~p~~-~~~~~~~~~~~l~~lL~~dP~~R~ta~e~l~h 634 (669)
T cd05610 590 ------QNILNRDIPWPEG-EEKLSVNAQNAIEILLTMDPTKRAGLKELKQH 634 (669)
T ss_pred ------HHHHhcCCCCCcc-cccCCHHHHHHHHHHcccChhHCcCHHHHHhC
Confidence 0000000000000 01123348889999999999999999887664
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481 |
| >cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.2e-13 Score=131.03 Aligned_cols=92 Identities=16% Similarity=0.119 Sum_probs=62.0
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....||+.|||||++ .+ ...++.++|||||||+||+|+||+ ||.......+.
T Consensus 153 ~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DvwslGvil~elltG~~Pf~~~~~~~~~------------ 206 (330)
T cd05586 153 TNTFCGTTEYLAPEVL------LD--------EKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMY------------ 206 (330)
T ss_pred ccCccCCccccCHHHH------cC--------CCCCCCccceeccccEEEEeccCCCCCCCCCHHHHH------------
Confidence 4567899999999998 22 123568999999999999999999 99764433211
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhh
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTN 157 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~ 157 (552)
..+.......+ ......++.+++.+||+.+|.+||+..+
T Consensus 207 -----~~i~~~~~~~~---~~~~~~~~~~li~~~L~~~P~~R~~~~~ 245 (330)
T cd05586 207 -----RNIAFGKVRFP---KNVLSDEGRQFVKGLLNRNPQHRLGAHR 245 (330)
T ss_pred -----HHHHcCCCCCC---CccCCHHHHHHHHHHcCCCHHHCCCCCC
Confidence 00000000000 0112345889999999999999997543
|
Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of |
| >KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9e-13 Score=128.76 Aligned_cols=108 Identities=21% Similarity=0.324 Sum_probs=77.8
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
+..-.|+.-|||||+++.. -...++++|||||||+|+|||+||. ||......+++++-+.-..
T Consensus 547 ~~qp~gsilwmAPEvIRmq------------d~nPfS~qSDVYaFGiV~YELltg~lPysi~~~dqIifmVGrG~l---- 610 (678)
T KOG0193|consen 547 LEQPHGSLLWMAPEVIRMQ------------DDNPFSFQSDVYAFGIVWYELLTGELPYSIQNRDQIIFMVGRGYL---- 610 (678)
T ss_pred cCCCccchhhhcHHHHhhc------------ccCCCCcccchhhhhHHHHHHHhCcCCcCCCChhheEEEeccccc----
Confidence 4555789999999999521 1356779999999999999999999 9997777776654443210
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhhc
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~~ 167 (552)
++ ....... ....++++++..|+.+++++||...++...+..++.
T Consensus 611 ---~p-d~s~~~s--------~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~ 655 (678)
T KOG0193|consen 611 ---MP-DLSKIRS--------NCPKAMKRLLSDCWKFDREERPLFPQLLSKLEELLP 655 (678)
T ss_pred ---Cc-cchhhhc--------cCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHhhh
Confidence 00 1111111 122248999999999999999999999887777663
|
|
| >cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2 | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.5e-13 Score=130.33 Aligned_cols=47 Identities=28% Similarity=0.520 Sum_probs=39.6
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHH
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKEL 93 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~ 93 (552)
.....||+.|||||++ .| ..++.++|||||||+||||+||+ ||....
T Consensus 159 ~~~~~g~~~y~aPE~~------~~---------~~~~~~~DiwslG~il~el~tg~~p~~~~~ 206 (331)
T cd06649 159 ANSFVGTRSYMSPERL------QG---------THYSVQSDIWSMGLSLVELAIGRYPIPPPD 206 (331)
T ss_pred cccCCCCcCcCCHhHh------cC---------CCCCchHhHHHHHHHHHHHHhCCCCCCCCC
Confidence 4567899999999999 32 45678999999999999999999 996533
|
Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-12 Score=125.71 Aligned_cols=92 Identities=17% Similarity=0.224 Sum_probs=61.4
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
....||+.|||||++ . ...++.++|||||||+||||++|+ ||........
T Consensus 159 ~~~~~~~~y~aPE~~------~---------~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~~-------------- 209 (285)
T cd05605 159 RGRVGTVGYMAPEVV------K---------NERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVK-------------- 209 (285)
T ss_pred ccccCCCCccCcHHh------c---------CCCCCccccchhHHHHHHHHHHCCCCCCCCchhhH--------------
Confidence 456899999999998 2 245678999999999999999999 9975332200
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchh
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~ 156 (552)
.......+...+..........+.+++.+||..+|.+||+..
T Consensus 210 ---~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~ 251 (285)
T cd05605 210 ---REEVERRVKEDQEEYSEKFSEAARSICRQLLTKDPGFRLGCR 251 (285)
T ss_pred ---HHHHHHHhhhcccccCcccCHHHHHHHHHHccCCHHHhcCCC
Confidence 001111111111111122344588999999999999999543
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, |
| >cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4 | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.5e-13 Score=128.29 Aligned_cols=114 Identities=16% Similarity=0.158 Sum_probs=65.3
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhh----hhhhccccCCC
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELID----YIRCVSTKASD 106 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~----~~~~~~~~~~~ 106 (552)
.+...||+.|||||++ . ...++.++|||||||++|+|++|+ ||...... .+.........
T Consensus 164 ~~~~~~~~~y~aPE~~------~---------~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~ 228 (288)
T cd07863 164 LTPVVVTLWYRAPEVL------L---------QSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPE 228 (288)
T ss_pred CCCccccccccCchHh------h---------CCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHHHHHHhCCCCh
Confidence 4567899999999998 2 245678999999999999999999 88543221 11111111111
Q ss_pred chhhhhh-hhHH-HHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 107 DNIACLG-MYMA-WMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 107 ~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..|.... .... .....+.............+.+++.+||+.+|.+||++.++..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~ 284 (288)
T cd07863 229 DDWPRDVTLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQ 284 (288)
T ss_pred hhCcccccccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 1110000 0000 0000000000111112334789999999999999999877653
|
Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou |
| >KOG0584 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.1e-13 Score=131.22 Aligned_cols=106 Identities=16% Similarity=0.175 Sum_probs=78.1
Q ss_pred hcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchH
Q 008820 15 KVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTK 91 (552)
Q Consensus 15 ~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~ 91 (552)
||| |||..+..+. ...++|||.|||||..+| .|++..||||||+|++||+|+. ||..
T Consensus 186 KIGDLGLAtl~r~s~----aksvIGTPEFMAPEmYEE----------------~YnE~VDVYaFGMCmLEMvT~eYPYsE 245 (632)
T KOG0584|consen 186 KIGDLGLATLLRKSH----AKSVIGTPEFMAPEMYEE----------------NYNELVDVYAFGMCMLEMVTSEYPYSE 245 (632)
T ss_pred eecchhHHHHhhccc----cceeccCccccChHHHhh----------------hcchhhhhhhhhHHHHHHHhccCChhh
Confidence 777 8887776663 456999999999999854 3458999999999999999999 9965
Q ss_pred HHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH--HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 92 ELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL--LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
=..+ ..++.++..- |........++++++|.+||.. ...|+++.++...
T Consensus 246 C~n~--------------------AQIYKKV~SGiKP~sl~kV~dPevr~fIekCl~~-~~~R~sa~eLL~d 296 (632)
T KOG0584|consen 246 CTNP--------------------AQIYKKVTSGIKPAALSKVKDPEVREFIEKCLAT-KSERLSAKELLKD 296 (632)
T ss_pred hCCH--------------------HHHHHHHHcCCCHHHhhccCCHHHHHHHHHHhcC-chhccCHHHHhhC
Confidence 3222 2344443211 2223334566799999999998 9999998876653
|
|
| >PHA03207 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.3e-13 Score=133.00 Aligned_cols=132 Identities=12% Similarity=0.161 Sum_probs=75.4
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
+|+. |+++.+...........+.||+.|||||++ . ...++.++|||||||+||||++|+ ||.
T Consensus 224 ~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~------~---------~~~~~~~~DvwslGvil~el~~g~~pf~ 288 (392)
T PHA03207 224 AVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELL------A---------LDPYCAKTDIWSAGLVLFEMSVKNVTLF 288 (392)
T ss_pred EEEccCccccccCcccccccccccccccCccCHhHh------c---------CCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence 4444 556665554433334567899999999999 2 245678999999999999999999 995
Q ss_pred HHHhh----hhhhc--cccCCCchhhhhhhhHHHHHHHHHH----------Hhh-hhcCccccHHHHHHhhcccCCCCCc
Q 008820 91 KELID----YIRCV--STKASDDNIACLGMYMAWMEKVTYL----------LEN-KFGSEFVSLQLMFCQCLNFDPGCRP 153 (552)
Q Consensus 91 ~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~~l~~~~~~~l~~~p~~R~ 153 (552)
+.... .+..+ ..+..+..+...... ......... +.. .......++.+++.+||..+|.+||
T Consensus 289 ~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rp 367 (392)
T PHA03207 289 GKQVKSSSSQLRSIIRCMQVHPLEFPQNGST-NLCKHFKQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRP 367 (392)
T ss_pred CCCCCCcHHHHHHHHHHhccCccccCCccch-hHHHHHHhhcccccCCccccchhhccCcchhHHHHHHHHhccChhhCC
Confidence 43211 11000 000011111000000 000000000 000 0011234588899999999999999
Q ss_pred chhhHHHH
Q 008820 154 LLTNVWKC 161 (552)
Q Consensus 154 ~~~~~~~~ 161 (552)
++.++...
T Consensus 368 sa~e~l~~ 375 (392)
T PHA03207 368 SAQDILSL 375 (392)
T ss_pred CHHHHhhC
Confidence 99887664
|
|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.1e-13 Score=128.14 Aligned_cols=100 Identities=13% Similarity=0.122 Sum_probs=73.0
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDY 96 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~ 96 (552)
||||.+..... +=+|+|||.|.|||++.++.+ +..+|.||||+++||||||+ ||.+....
T Consensus 565 GFAKki~~g~K---TwTFcGTpEYVAPEIILnKGH---------------D~avDyWaLGIli~ELL~G~pPFs~~dpm- 625 (732)
T KOG0614|consen 565 GFAKKIGSGRK---TWTFCGTPEYVAPEIILNKGH---------------DRAVDYWALGILIYELLTGSPPFSGVDPM- 625 (732)
T ss_pred hhHHHhccCCc---eeeecCCcccccchhhhccCc---------------chhhHHHHHHHHHHHHHcCCCCCCCCchH-
Confidence 78888888776 568999999999999954433 47899999999999999999 99886654
Q ss_pred hhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcc
Q 008820 97 IRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (552)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~ 154 (552)
.+|..+...+-... .+........+++.++...+|.+|-.
T Consensus 626 ----------------ktYn~ILkGid~i~--~Pr~I~k~a~~Lik~LCr~~P~ERLG 665 (732)
T KOG0614|consen 626 ----------------KTYNLILKGIDKIE--FPRRITKTATDLIKKLCRDNPTERLG 665 (732)
T ss_pred ----------------HHHHHHHhhhhhhh--cccccchhHHHHHHHHHhcCcHhhhc
Confidence 12333333221111 11223344778999999999999966
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.2e-10 Score=100.08 Aligned_cols=243 Identities=15% Similarity=0.165 Sum_probs=170.3
Q ss_pred EEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEE
Q 008820 287 TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKA 366 (552)
Q Consensus 287 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~i 366 (552)
.+..-..+|+|.+|+++.. .++.+.....|.||.......-....++..|.. .. ....+++..+.|++|+.|..-++
T Consensus 5 ~~~~~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~-~v-tgvdWap~snrIvtcs~drnayV 81 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK-IV-TGVDWAPKSNRIVTCSHDRNAYV 81 (361)
T ss_pred EeeeccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCceeceehhhhCc-ce-eEEeecCCCCceeEccCCCCccc
Confidence 3444557899999998655 668888899999999887665555555555543 22 23678888889999999999999
Q ss_pred EECCC-C--ceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCcee---EEEecCCCCceEEEEEEcCCCCE
Q 008820 367 WSLLD-G--TLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLL---TVLEEDSSGAVSSVLSLTAVQHT 438 (552)
Q Consensus 367 wd~~~-~--~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~s~~~~~ 438 (552)
|.... + ++...+..+....+++.|+ ++.|++|+.-..|.+|-+.....- +.++......+.+ +.|.|++-+
T Consensus 82 w~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~s-ldWhpnnVL 160 (361)
T KOG1523|consen 82 WTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTS-LDWHPNNVL 160 (361)
T ss_pred cccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceee-eeccCCcce
Confidence 99843 3 3444566689999999999 569999999999999987654321 2233333344454 799999999
Q ss_pred EEEEECCCcEEEEeC-----C---------------cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCee
Q 008820 439 LVVSHESGSIKVWRN-----D---------------KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEF 496 (552)
Q Consensus 439 l~~g~~dg~i~iwd~-----~---------------~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~ 496 (552)
+++|+.|+..+++.. . .+...+....+.+..+.| +|..|+-.+.|..+.+=|......
T Consensus 161 laaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~ 240 (361)
T KOG1523|consen 161 LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE 240 (361)
T ss_pred ecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch
Confidence 999999999999951 1 112233345567888877 799999999999999999876643
Q ss_pred eeeeccCCCcccCcceEEEEEe-CCeEEEEeCCCeEEEEEec
Q 008820 497 EEDVIPTGAIPCGSVITALLYW-QGKLFVGCADRTVKIALCN 537 (552)
Q Consensus 497 ~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~Dg~v~iw~~~ 537 (552)
........ .-+..++.|- +..++.++.|..=.++..+
T Consensus 241 ~v~~~~~~----~lP~ls~~~ise~~vv~ag~~c~P~lf~~~ 278 (361)
T KOG1523|consen 241 RVQSVATA----QLPLLSVSWISENSVVAAGYDCGPVLFVTD 278 (361)
T ss_pred hccchhhc----cCCceeeEeecCCceeecCCCCCceEEEec
Confidence 22222211 2334555554 5567777777544444444
|
|
| >PLN00034 mitogen-activated protein kinase kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.9e-13 Score=132.50 Aligned_cols=118 Identities=15% Similarity=0.228 Sum_probs=71.9
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+..... ......||+.|||||++..... .....+.++|||||||+||||++|+ ||.
T Consensus 207 ~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~----------~~~~~~~~~DvwslGvil~el~~g~~pf~ 274 (353)
T PLN00034 207 VKIADFGVSRILAQTMD--PCNSSVGTIAYMSPERINTDLN----------HGAYDGYAGDIWSLGVSILEFYLGRFPFG 274 (353)
T ss_pred EEEcccccceecccccc--cccccccCccccCccccccccc----------cCcCCCcchhHHHHHHHHHHHHhCCCCCC
Confidence 4444 55555543321 1355789999999999822111 1123346899999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHH-HHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKV-TYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
..... .|. ...... .............++.+++.+||+.+|++||++.++.+.
T Consensus 275 ~~~~~------------~~~------~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell~h 328 (353)
T PLN00034 275 VGRQG------------DWA------SLMCAICMSQPPEAPATASREFRHFISCCLQREPAKRWSAMQLLQH 328 (353)
T ss_pred CCCCc------------cHH------HHHHHHhccCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 32211 000 000000 000111112234469999999999999999998877653
|
|
| >cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-12 Score=124.36 Aligned_cols=97 Identities=13% Similarity=0.205 Sum_probs=67.6
Q ss_pred hccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhh
Q 008820 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
...+++.|+|||++ . ...++.++|||||||+||||++ |. ||.+.....+.
T Consensus 164 ~~~~~~~y~aPE~~------~---------~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~------------- 215 (263)
T cd05052 164 GAKFPIKWTAPESL------A---------YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVY------------- 215 (263)
T ss_pred CCCCccccCCHHHh------c---------cCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHH-------------
Confidence 34557889999998 2 2456789999999999999998 88 99664333110
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
...... .........+.++.+++.+|++.+|++||++.++.+.+..+
T Consensus 216 ----~~~~~~---~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~ 262 (263)
T cd05052 216 ----ELLEKG---YRMERPEGCPPKVYELMRACWQWNPSDRPSFAEIHQAFETM 262 (263)
T ss_pred ----HHHHCC---CCCCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence 000000 00111122345699999999999999999999998887654
|
Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays |
| >cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3 | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-12 Score=124.86 Aligned_cols=119 Identities=13% Similarity=0.180 Sum_probs=79.0
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
+|+. |+++.+...+.....+...|++.|||||++ . ...+++++|||||||++|||++ |+ ||
T Consensus 148 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~------~---------~~~~~~~~Dv~slG~il~el~t~g~~p~ 212 (279)
T cd05111 148 VQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESI------L---------FGRYTHQSDVWSYGVTVWEMMSYGAEPY 212 (279)
T ss_pred EEEcCCccceeccCCCcccccCCCCCcccccCHHHh------c---------cCCcCchhhHHHHHHHHHHHHcCCCCCC
Confidence 4444 556655444333334567788999999998 2 2557789999999999999998 99 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhhc
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~~ 167 (552)
.+.....+. .+...-. ...........+.+++.+|+..+|.+||++.++.+.+..+..
T Consensus 213 ~~~~~~~~~------------------~~~~~~~--~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~el~~~l~~~~~ 270 (279)
T cd05111 213 AGMRPHEVP------------------DLLEKGE--RLAQPQICTIDVYMVMVKCWMIDENVRPTFKELANEFTRMAR 270 (279)
T ss_pred CCCCHHHHH------------------HHHHCCC--cCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHh
Confidence 654322110 0000000 000111223457889999999999999999999888877653
|
Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r |
| >cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7 | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.5e-13 Score=126.49 Aligned_cols=96 Identities=14% Similarity=0.129 Sum_probs=63.6
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
....||+.|||||++ . ...++.++|||||||+||||++|+ ||....... .
T Consensus 152 ~~~~~~~~y~aPE~~------~---------~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~-~------------- 202 (277)
T cd05607 152 TQRAGTNGYMAPEIL------K---------EEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKV-A------------- 202 (277)
T ss_pred eccCCCCCccCHHHH------c---------cCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchh-h-------------
Confidence 456799999999998 2 245778999999999999999999 996422110 0
Q ss_pred hhhhHHHHHHHHH-HHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 112 LGMYMAWMEKVTY-LLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 112 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.......... ......+....++.+++.+||+.+|.+||++.++.+
T Consensus 203 ---~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~ 249 (277)
T cd05607 203 ---KEELKRRTLEDEVKFEHQNFTEESKDICRLFLAKKPEDRLGSREKND 249 (277)
T ss_pred ---HHHHHHHhhccccccccccCCHHHHHHHHHHhccCHhhCCCCccchh
Confidence 0000000000 000011123445899999999999999999876543
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr |
| >cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.9e-13 Score=129.94 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=66.2
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....||+.|||||++ .+ ..++.++|||||||+||||++|+ ||...+...+.
T Consensus 155 ~~~~~gt~~y~aPE~~------~~---------~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~------------ 207 (333)
T cd05600 155 ANSVVGSPDYMAPEVL------RG---------KGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETW------------ 207 (333)
T ss_pred cCCcccCccccChhHh------cC---------CCCCCccceecchHHHhhhhhCCCCCCCCCHHHHH------------
Confidence 4567899999999999 33 46778999999999999999999 99764433110
Q ss_pred hhhhhHHHHHHHHHHHhh--hhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 111 CLGMYMAWMEKVTYLLEN--KFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
.....+.. ....+.. .......++.+++.+||..+|.+||++.++.+.
T Consensus 208 --~~i~~~~~-~~~~~~~~~~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~h 257 (333)
T cd05600 208 --ENLKYWKE-TLQRPVYDDPRFNLSDEAWDLITKLINDPSRRFGSLEDIKNH 257 (333)
T ss_pred --HHHHhccc-cccCCCCCccccccCHHHHHHHHHHhhChhhhcCCHHHHHhC
Confidence 00000000 0000000 001124458899999999999999998776653
|
Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. |
| >cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-12 Score=124.33 Aligned_cols=111 Identities=15% Similarity=0.138 Sum_probs=72.4
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELID 95 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~ 95 (552)
|++..+...... ......+++.|||||++ . ...+++++|||||||++|+|+| |+ ||......
T Consensus 148 g~~~~~~~~~~~-~~~~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~ 211 (261)
T cd05072 148 GLARVIEDNEYT-AREGAKFPIKWTAPEAI------N---------FGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNS 211 (261)
T ss_pred ccceecCCCcee-ccCCCccceecCCHHHh------c---------cCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHH
Confidence 445554433221 23445678899999998 2 2456789999999999999999 89 99653322
Q ss_pred hhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHh
Q 008820 96 YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (552)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~ 164 (552)
.+. ..+... ...+.......++.+++.+|+..+|++||++.++.+.+..
T Consensus 212 ~~~-----------------~~~~~~---~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~ 260 (261)
T cd05072 212 DVM-----------------SALQRG---YRMPRMENCPDELYDIMKTCWKEKAEERPTFDYLQSVLDD 260 (261)
T ss_pred HHH-----------------HHHHcC---CCCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence 110 000000 0001111233458899999999999999999998887654
|
Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa |
| >KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.3e-13 Score=140.87 Aligned_cols=117 Identities=19% Similarity=0.325 Sum_probs=75.3
Q ss_pred hhhcc--cccccccccc--hhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-
Q 008820 13 VAKVG--CVGSRICDKE--VGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~--~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~- 87 (552)
+-|-+ |-|..|.... +...+.+.+|||+|||||++ .|.+ ..|+ +-+.|||||||+.+||+||+
T Consensus 1372 ~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAPEvi------t~t~-----~kG~-~~A~DiWslGCVVlEM~tGkr 1439 (1509)
T KOG4645|consen 1372 LIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAPEVI------TGTK-----GKGH-GGAADIWSLGCVVLEMATGKR 1439 (1509)
T ss_pred cEEeecccceeEecCchhcCCHHHHhhcCCchhcCchhh------cccc-----cCCC-CcchhhhcccceEEEeecCCC
Confidence 44444 3344444432 33568899999999999999 4411 1122 35799999999999999999
Q ss_pred CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
|+..-.. +|++. +.....+.|..|.. ...+-.++|.+||+.||..|.++.++.+
T Consensus 1440 PW~~~dn-------------e~aIM--y~V~~gh~Pq~P~~----ls~~g~dFle~Cl~~dP~~Rw~~~qlle 1493 (1509)
T KOG4645|consen 1440 PWAELDN-------------EWAIM--YHVAAGHKPQIPER----LSSEGRDFLEHCLEQDPKMRWTASQLLE 1493 (1509)
T ss_pred chhhccc-------------hhHHH--hHHhccCCCCCchh----hhHhHHHHHHHHHhcCchhhhHHHHHHH
Confidence 9954221 23321 22222333333322 4445789999999999999966655444
|
|
| >cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-12 Score=124.10 Aligned_cols=116 Identities=17% Similarity=0.209 Sum_probs=73.4
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
..|.. |+++.+...+.........+++.|||||++ ..+.+++++|||||||++|||+| |+ |
T Consensus 149 ~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~---------------~~~~~~~~~Dv~slG~il~ellt~g~~p 213 (269)
T cd05044 149 VVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESL---------------LDGKFTTQSDVWSFGVLMWEILTLGQQP 213 (269)
T ss_pred ceEECCcccccccccccccccCcccCCCccccCHHHH---------------ccCCcccchhHHHHHHHHHHHHHcCCCC
Confidence 34554 455544333222223345678999999998 23567789999999999999998 99 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHH
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~ 163 (552)
|.......+. ...... .........+..+.+++.+||+.+|.+||++.++.+.+.
T Consensus 214 ~~~~~~~~~~-----------------~~~~~~---~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~ 268 (269)
T cd05044 214 YPALNNQEVL-----------------QHVTAG---GRLQKPENCPDKIYQLMTNCWAQDPSERPTFDRIQEILQ 268 (269)
T ss_pred CcccCHHHHH-----------------HHHhcC---CccCCcccchHHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence 9653322110 000000 000000112234889999999999999999999887654
|
Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male |
| >cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-12 Score=126.82 Aligned_cols=118 Identities=14% Similarity=0.235 Sum_probs=74.5
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
.+|.. |+++.+.............+++.|||||++ . ...++.++|||||||++|||++ |. |
T Consensus 179 ~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~---------~~~~~~~~DiwslGvil~el~t~g~~p 243 (302)
T cd05055 179 IVKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESI------F---------NCVYTFESDVWSYGILLWEIFSLGSNP 243 (302)
T ss_pred eEEECCCcccccccCCCceeecCCCCcccccCCHhhh------c---------cCCCCcHhHHHHHHHHHHHHHhCCCCC
Confidence 34554 445544333211122345678999999998 2 2456789999999999999998 99 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHH-HHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTY-LLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
|....... ........ ............+.+++.+||..+|++||++.++.+.+.++
T Consensus 244 ~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~~ 301 (302)
T cd05055 244 YPGMPVDS--------------------KFYKLIKEGYRMAQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQLIGKQ 301 (302)
T ss_pred cCCCCchH--------------------HHHHHHHcCCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence 86532210 00000000 00001112234589999999999999999999998887653
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept |
| >cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-12 Score=123.55 Aligned_cols=106 Identities=20% Similarity=0.284 Sum_probs=69.9
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDY 96 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~ 96 (552)
|+++.+..... ......|++.|+|||++ . ....++++|+|||||++|+|++|+ ||.......
T Consensus 146 ~~~~~~~~~~~--~~~~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~ 208 (256)
T cd08529 146 GVAKLLSDNTN--FANTIVGTPYYLSPELC------E---------DKPYNEKSDVWALGVVLYECCTGKHPFDANNQGA 208 (256)
T ss_pred ccceeccCccc--hhhccccCccccCHHHh------c---------CCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 44444444322 24556899999999998 2 245678999999999999999999 996544221
Q ss_pred hhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 97 IRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
+. +..... ...........++.+++.+|++.+|++||++.++.+
T Consensus 209 ~~-----------------~~~~~~---~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~ 252 (256)
T cd08529 209 LI-----------------LKIIRG---VFPPVSQMYSQQLAQLIDQCLTKDYRQRPDTFQLLR 252 (256)
T ss_pred HH-----------------HHHHcC---CCCCCccccCHHHHHHHHHHccCCcccCcCHHHHhh
Confidence 10 000000 000000112335899999999999999999988765
|
Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc |
| >cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-12 Score=128.66 Aligned_cols=97 Identities=18% Similarity=0.179 Sum_probs=62.1
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
...+.||+.|||||++ . ...++.++|||||||++|||++|+ ||........ ....
T Consensus 153 ~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~----~~~~----- 208 (329)
T cd05618 153 TSTFCGTPNYIAPEIL------R---------GEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDN----PDQN----- 208 (329)
T ss_pred cccccCCccccCHHHH------c---------CCCCCCccceecccHHHHHHhhCCCCCccCCCcCC----cccc-----
Confidence 4567899999999999 2 255678999999999999999999 9953211100 0000
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcch
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~ 155 (552)
................+......+.+++.+||+.+|.+||+.
T Consensus 209 ---~~~~~~~~i~~~~~~~p~~~~~~~~~ll~~~L~~dP~~R~~~ 250 (329)
T cd05618 209 ---TEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGC 250 (329)
T ss_pred ---cHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHhcCCHHHcCCC
Confidence 000111111111111112234558899999999999999985
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o |
| >cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1 | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-12 Score=130.22 Aligned_cols=61 Identities=20% Similarity=0.436 Sum_probs=46.0
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++...... ......||+.|||||++ .| ..++.++|||||||+||||++|+ ||.
T Consensus 165 ~kL~DfG~a~~~~~~~---~~~~~~~t~~y~aPE~~------~~---------~~~~~~~DiwSlG~il~ell~g~~pf~ 226 (364)
T cd07875 165 LKILDFGLARTAGTSF---MMTPYVVTRYYRAPEVI------LG---------MGYKENVDIWSVGCIMGEMIKGGVLFP 226 (364)
T ss_pred EEEEeCCCccccCCCC---cccCCcccCCcCCHHHH------hC---------CCCCchhhHHhHHHHHHHHHhCCCCCC
Confidence 4555 5555443332 24567899999999999 22 45678999999999999999999 996
Q ss_pred HH
Q 008820 91 KE 92 (552)
Q Consensus 91 ~~ 92 (552)
+.
T Consensus 227 ~~ 228 (364)
T cd07875 227 GT 228 (364)
T ss_pred CC
Confidence 53
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-12 Score=128.19 Aligned_cols=97 Identities=18% Similarity=0.208 Sum_probs=63.0
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
...+.||+.|||||++ . ...+++++|+|||||++|||+||+ ||+..... .....
T Consensus 153 ~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~-----~~~~~----- 207 (329)
T cd05588 153 TSTFCGTPNYIAPEIL------R---------GEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMS-----DNPDQ----- 207 (329)
T ss_pred cccccCCccccCHHHH------c---------CCCCCCccceechHHHHHHHHHCCCCccccccc-----ccccc-----
Confidence 4567899999999999 2 245678999999999999999999 99642211 00000
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcch
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~ 155 (552)
.......................++.+++.+||+.+|.+|++.
T Consensus 208 --~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~ 250 (329)
T cd05588 208 --NTEDYLFQVILEKQIRIPRSLSVKASSVLKGFLNKDPKERLGC 250 (329)
T ss_pred --cchHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhccCHHHcCCC
Confidence 0000111111111111122234568999999999999999984
|
Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl |
| >cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.7e-13 Score=125.79 Aligned_cols=93 Identities=20% Similarity=0.224 Sum_probs=64.3
Q ss_pred ccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhhh
Q 008820 35 FLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIACL 112 (552)
Q Consensus 35 ~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~~ 112 (552)
..+++.|||||++ . ...+++++|||||||++|||++ |. ||.......+.
T Consensus 181 ~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~~~~~-------------- 231 (277)
T cd05062 181 GLLPVRWMSPESL------K---------DGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSNEQVL-------------- 231 (277)
T ss_pred CccCHhhcChhHh------h---------cCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHH--------------
Confidence 4568899999998 2 2456789999999999999999 67 98654333111
Q ss_pred hhhHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHH
Q 008820 113 GMYMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (552)
Q Consensus 113 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~ 163 (552)
....... ..........+.+++.+||+.+|.+||++.++.+.+.
T Consensus 232 -------~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~ 276 (277)
T cd05062 232 -------RFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIK 276 (277)
T ss_pred -------HHHHcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHhh
Confidence 0000000 0011123445899999999999999999998877653
|
Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh |
| >cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-12 Score=130.45 Aligned_cols=119 Identities=16% Similarity=0.215 Sum_probs=76.3
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
+|+. |+++.+.............|++.|||||++ . ...+++++|||||||+||||++ |. ||
T Consensus 276 ~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~------~---------~~~~~~~~DiwSlGvil~ellt~g~~P~ 340 (400)
T cd05105 276 VKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESI------F---------DNLYTTLSDVWSYGILLWEIFSLGGTPY 340 (400)
T ss_pred EEEEeCCcceeccccccccccCCcCCCcceEChhhh------c---------CCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence 4554 555544333222223445688999999998 2 2456789999999999999997 88 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
......... ....... ............+.+++.+||+.+|++||+..++.+.+.++.
T Consensus 341 ~~~~~~~~~----------------~~~~~~~---~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l~ 398 (400)
T cd05105 341 PGMIVDSTF----------------YNKIKSG---YRMAKPDHATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESLL 398 (400)
T ss_pred cccchhHHH----------------HHHHhcC---CCCCCCccCCHHHHHHHHHHCccCHhHCcCHHHHHHHHHHHc
Confidence 653221000 0000000 000011123345889999999999999999999999888765
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF- |
| >cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-12 Score=125.33 Aligned_cols=96 Identities=10% Similarity=0.149 Sum_probs=65.7
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
....+++.|+|||++ . ...+++++|||||||++|||++ |+ ||.........
T Consensus 182 ~~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~------------ 234 (280)
T cd05092 182 GRTMLPIRWMPPESI------L---------YRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEAI------------ 234 (280)
T ss_pred CCccccccccCHHHh------c---------cCCcCchhhHHHHHHHHHHHHcCCCCCCccCCHHHHH------------
Confidence 445568899999998 2 2556789999999999999998 88 99543222100
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~ 163 (552)
...... .+.......+.++.+++.+||+.+|.+||++.++.+.+.
T Consensus 235 -----~~~~~~---~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~~l~ 279 (280)
T cd05092 235 -----ECITQG---RELERPRTCPPEVYAIMQGCWQREPQQRMVIKDIHSRLQ 279 (280)
T ss_pred -----HHHHcC---ccCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHh
Confidence 000000 000111123456899999999999999999999887653
|
Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.2e-10 Score=109.35 Aligned_cols=203 Identities=16% Similarity=0.232 Sum_probs=146.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCce
Q 008820 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWR 341 (552)
Q Consensus 262 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 341 (552)
..++|....||.+|+||..+++....+... +..+..++-..|.+..............
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~-----------------~~~s~t~~~~~w~L~~~~s~~k~~~~~~----- 62 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPI-----------------ASLSGTCTYTKWGLSADYSPMKWLSLEK----- 62 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccc-----------------hhccCcceeEEEEEEeccchHHHHhHHH-----
Confidence 568999999999999999988877666431 1111122233333221111111111100
Q ss_pred eeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEec--CCCCCeEEEEEeC--CEEEEEeCCCcEEEEECCCCceeEE
Q 008820 342 YSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMS--GHKSAVSTLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTV 417 (552)
Q Consensus 342 ~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~ 417 (552)
....+-+...++-|...|.|.+|++..++....+. .|.+.|+++.+++ +.|.+++.|+.+..|+....+.+..
T Consensus 63 ---~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~ 139 (541)
T KOG4547|consen 63 ---AKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRI 139 (541)
T ss_pred ---HhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeee
Confidence 01122344588999999999999999999988875 6999999999884 4999999999999999999999888
Q ss_pred EecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEe--c-----CCEEEE-EeCCCeEE
Q 008820 418 LEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--E-----GKWLFT-GGWDKTVS 487 (552)
Q Consensus 418 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~-----~~~l~s-gs~dg~i~ 487 (552)
+...... +.+ ++++||+..+++++. .|++||+. +.+..+.+|.++|.+++| + |.++.+ ...+..+.
T Consensus 140 ~~~~~~~-~~s-l~is~D~~~l~~as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~ 215 (541)
T KOG4547|consen 140 WKEQKPL-VSS-LCISPDGKILLTASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGIT 215 (541)
T ss_pred eccCCCc-cce-EEEcCCCCEEEeccc--eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccccccee
Confidence 8876443 333 799999999998865 79999954 578899999999999998 3 566555 44566788
Q ss_pred EEecCC
Q 008820 488 VQELAG 493 (552)
Q Consensus 488 iwd~~~ 493 (552)
+|-+..
T Consensus 216 ~w~v~~ 221 (541)
T KOG4547|consen 216 VWVVEK 221 (541)
T ss_pred EEEEEc
Confidence 887764
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-09 Score=97.20 Aligned_cols=295 Identities=13% Similarity=0.108 Sum_probs=186.9
Q ss_pred eeeecCcceEEEeeCCCeEEEEE---eecC-----ccceEEEEEc--C-CEEEEEeCCCcEEEEeCCCCeEEEEEeCCCC
Q 008820 225 ARAAGGVKDLVNGLSKGNVKFKD---LQGH-----RDCVTGLAVG--G-GFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH 293 (552)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~---l~~H-----~~~V~~l~~s--~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~ 293 (552)
..+++.++.+++...- .+.+++ |+-| -+.|.-+.|. . -.+.....|+.|.+|++...+-...+.....
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a 92 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA 92 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCC
Confidence 4456666666665433 555554 2223 3567778887 3 3455567889999999998888888888889
Q ss_pred CeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeC-------------
Q 008820 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG------------- 360 (552)
Q Consensus 294 ~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~------------- 360 (552)
++.+++|+|++..++.+...|-.|.+|.+.+.+..... +.. +.....+|+++|++.+.++.
T Consensus 93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~--~pK----~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~ 166 (447)
T KOG4497|consen 93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP--HPK----TNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK 166 (447)
T ss_pred cceeeeECCCcceEeeeecceeEEEEEEeccceeEEec--ccc----cCceeEEECCCCceeeeeecccHHHHHHHHhhH
Confidence 99999999999999999999999999999865422111 111 11234577777776555532
Q ss_pred -----------------------CCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCcee
Q 008820 361 -----------------------DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLL 415 (552)
Q Consensus 361 -----------------------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~ 415 (552)
+..+.+||---.-.+..+. ..-.+..++|+ +.+++.|+.|+.+|+.|--+-+..
T Consensus 167 ~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 167 AWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPF 245 (447)
T ss_pred HHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeeh
Confidence 1223444422111111111 23467888898 459999999999998654221111
Q ss_pred EEE------------------------------------------------------------ec----CCCCceEEEEE
Q 008820 416 TVL------------------------------------------------------------EE----DSSGAVSSVLS 431 (552)
Q Consensus 416 ~~~------------------------------------------------------------~~----~~~~~~~~~~~ 431 (552)
..+ +. ..+......++
T Consensus 246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la 325 (447)
T KOG4497|consen 246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA 325 (447)
T ss_pred hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence 000 00 00111223478
Q ss_pred EcCCCCEEEEEECC--CcEEEEeCCcc-eeeeecccceEEEEEec--CCEEEEEeCCCeEEEEecCCCeeeeeeccCCCc
Q 008820 432 LTAVQHTLVVSHES--GSIKVWRNDKF-MKSMQTHKGSVFAVFLE--GKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAI 506 (552)
Q Consensus 432 ~s~~~~~l~~g~~d--g~i~iwd~~~~-~~~~~~h~~~v~~v~~~--~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~ 506 (552)
|++|..++++-.+. +.+-+||+++. +...-....+|..+.|| ...|+.+.....+++|.............
T Consensus 326 fs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~---- 401 (447)
T KOG4497|consen 326 FSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKK---- 401 (447)
T ss_pred ecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCC----
Confidence 99999888886543 57889998753 33344456678888773 44666666667899999887544333222
Q ss_pred ccCcceEEEEEe-CC-eEEEEeCCCeEEE
Q 008820 507 PCGSVITALLYW-QG-KLFVGCADRTVKI 533 (552)
Q Consensus 507 ~~~~~v~~l~~~-~~-~l~s~s~Dg~v~i 533 (552)
.-.|..+.|. ++ .++..+.|....-
T Consensus 402 --GF~i~~l~W~~~g~~i~l~~kDafc~a 428 (447)
T KOG4497|consen 402 --GFNIQKLQWLQPGEFIVLCGKDAFCVA 428 (447)
T ss_pred --CceeeeEEecCCCcEEEEEcCCceEEE
Confidence 3458899998 44 4777888865433
|
|
| >cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6 | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-12 Score=125.01 Aligned_cols=91 Identities=15% Similarity=0.206 Sum_probs=61.4
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
....||+.|||||++ ....++.++|||||||++|+|++|+ ||........
T Consensus 159 ~~~~g~~~y~aPE~~---------------~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~-------------- 209 (285)
T cd05630 159 KGRVGTVGYMAPEVV---------------KNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIK-------------- 209 (285)
T ss_pred cCCCCCccccChHHH---------------cCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccch--------------
Confidence 345899999999999 2355778999999999999999999 9975321100
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcch
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~ 155 (552)
.......... ...........++.+++.+||+.+|.+||+.
T Consensus 210 ~~~~~~~~~~---~~~~~~~~~~~~~~~li~~~l~~~p~~R~s~ 250 (285)
T cd05630 210 REEVERLVKE---VQEEYSEKFSPDARSLCKMLLCKDPKERLGC 250 (285)
T ss_pred HHHHHhhhhh---hhhhcCccCCHHHHHHHHHHhhcCHHHccCC
Confidence 0000001011 1111122234568999999999999999983
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as |
| >cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1 | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-12 Score=124.29 Aligned_cols=116 Identities=14% Similarity=0.175 Sum_probs=74.7
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
+|+. |+++.+.............++..|||||++ . ...++.++|||||||+||||++ |. ||
T Consensus 163 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~---------~~~~~~~~Dv~slG~il~el~~~g~~p~ 227 (283)
T cd05090 163 VKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAI------M---------YGKFSSDSDIWSFGVVLWEIFSFGLQPY 227 (283)
T ss_pred EEeccccccccccCCcceecccCCCccceecChHHh------c---------cCCCCchhhhHHHHHHHHHHHcCCCCCC
Confidence 4444 555554333322234556678899999998 2 2456789999999999999999 88 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~ 164 (552)
.+.....+. ...... ...+........+.+++.+|++.+|.+||+..++.+.+..
T Consensus 228 ~~~~~~~~~-----------------~~~~~~---~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~ 282 (283)
T cd05090 228 YGFSNQEVI-----------------EMVRKR---QLLPCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRLRS 282 (283)
T ss_pred CCCCHHHHH-----------------HHHHcC---CcCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHhhc
Confidence 653322110 000000 0000111223458899999999999999999998876653
|
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly |
| >cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-12 Score=124.12 Aligned_cols=94 Identities=19% Similarity=0.289 Sum_probs=64.7
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....|++.|+|||++ . ....++++|+|||||+||+|+||+ ||.........
T Consensus 155 ~~~~~~~~~y~~PE~~------~---------~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~~~~------------ 207 (274)
T cd06609 155 RNTFVGTPFWMAPEVI------K---------QSGYDEKADIWSLGITAIELAKGEPPLSDLHPMRVL------------ 207 (274)
T ss_pred cccccCCccccChhhh------c---------cCCCCchhhHHHHHHHHHHHHhCCCCcccCchHHHH------------
Confidence 4567899999999999 2 244778999999999999999999 99654322110
Q ss_pred hhhhhHHHHHHHHHHHhhhhcC-ccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGS-EFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
...... .+...... ...++.+++.+||..+|++||++.++.+
T Consensus 208 -----~~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~~p~~Rpt~~~il~ 250 (274)
T cd06609 208 -----FLIPKN---NPPSLEGNKFSKPFKDFVSLCLNKDPKERPSAKELLK 250 (274)
T ss_pred -----HHhhhc---CCCCCcccccCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence 000000 00000011 2335889999999999999999887755
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-08 Score=100.33 Aligned_cols=303 Identities=13% Similarity=0.116 Sum_probs=172.9
Q ss_pred eCCCeEEEEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCC
Q 008820 238 LSKGNVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGG 315 (552)
Q Consensus 238 ~~~~~~~~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg 315 (552)
..+....+..+....+.-..+.|+ ++++++++.||.|.++|+.+++.+.+++... ...++++++++..+++++..++
T Consensus 22 D~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~ 100 (369)
T PF02239_consen 22 DGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPG 100 (369)
T ss_dssp ETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETT
T ss_pred ECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCC
Confidence 333344456666554444456777 8999999999999999999999999998654 4688999999988877888899
Q ss_pred cEEEEeCCCCCCCccccccccCC---CceeeeEEEEeeCCC-EEEEeeCCCcEEEEECCCCceeE-EecCCCCCeEEEEE
Q 008820 316 GIFVWSFSFPLGHEPLKKWNEEK---DWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSC-TMSGHKSAVSTLAV 390 (552)
Q Consensus 316 ~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~l~sgs~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~ 390 (552)
.+.++|.++.+..+.+....... ......+.. ++... ++++--+.+.|.+.|....+.+. +............|
T Consensus 101 ~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~-s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~ 179 (369)
T PF02239_consen 101 TVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVA-SPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGF 179 (369)
T ss_dssp EEEEEETTT--EEEEEE--EE-TTTS---EEEEEE--SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE
T ss_pred ceeEeccccccceeecccccccccccCCCceeEEe-cCCCCEEEEEEccCCeEEEEEeccccccceeeeccccccccccc
Confidence 99999998765554443322111 112223333 44455 44555555888888977654432 23224455677888
Q ss_pred e-CC-EE-EEEeCCCcEEEEECCCCceeEEEecCC---CCceEE--------EEEEcCCCCEEEEEECCCcEEEEeCC--
Q 008820 391 C-NG-VL-YSGSRDGTIRLWSLSDHSLLTVLEEDS---SGAVSS--------VLSLTAVQHTLVVSHESGSIKVWRND-- 454 (552)
Q Consensus 391 ~-~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~--------~~~~s~~~~~l~~g~~dg~i~iwd~~-- 454 (552)
+ ++ ++ ++...++.|-++|..+++.+..+.... ...... +......+...++.-....+.+||..
T Consensus 180 dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w 259 (369)
T PF02239_consen 180 DPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW 259 (369)
T ss_dssp -TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT
T ss_pred CcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC
Confidence 8 33 44 445677899999999988776664321 111111 01122222232222223345566643
Q ss_pred cceeeeecccceEE-EEEecCCEEEEE----eCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-Ce--EEEEe
Q 008820 455 KFMKSMQTHKGSVF-AVFLEGKWLFTG----GWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-GK--LFVGC 526 (552)
Q Consensus 455 ~~~~~~~~h~~~v~-~v~~~~~~l~sg----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~--l~s~s 526 (552)
+.++.+....+.+. ..++++++++.. ...++|.++|.++.+....+.... ...+..+.|++ +. .+|.-
T Consensus 260 kvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~----~~~~~h~ef~~dG~~v~vS~~ 335 (369)
T PF02239_consen 260 KVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP----GKRVVHMEFNPDGKEVWVSVW 335 (369)
T ss_dssp SEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH----T--EEEEEE-TTSSEEEEEEE
T ss_pred eEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC----CCcEeccEECCCCCEEEEEEe
Confidence 46666766555543 345799999988 445899999999876554443211 23488899994 33 33433
Q ss_pred -CCCeEEEEEecCCcceeEEEe
Q 008820 527 -ADRTVKIALCNRQIPEIFSLL 547 (552)
Q Consensus 527 -~Dg~v~iw~~~~~~~~~~~~~ 547 (552)
.+|.|.+||.. +.+++.++.
T Consensus 336 ~~~~~i~v~D~~-Tl~~~~~i~ 356 (369)
T PF02239_consen 336 DGNGAIVVYDAK-TLKEKKRIP 356 (369)
T ss_dssp --TTEEEEEETT-TTEEEEEEE
T ss_pred cCCCEEEEEECC-CcEEEEEEE
Confidence 34489999987 565555543
|
... |
| >cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-12 Score=128.94 Aligned_cols=116 Identities=17% Similarity=0.268 Sum_probs=67.2
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhh----hhccccCCC
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYI----RCVSTKASD 106 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~----~~~~~~~~~ 106 (552)
....+||+.|||||++. + ....+++++|||||||++|||+||+ ||.+...... ....+...+
T Consensus 163 ~~~~~~t~~y~aPE~~~------~-------~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~ 229 (338)
T cd07859 163 WTDYVATRWYRAPELCG------S-------FFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSP 229 (338)
T ss_pred ccCCCCCCCcCCHHHHh------c-------cccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCH
Confidence 45678999999999982 1 1245678999999999999999999 9965432211 100111000
Q ss_pred chhhhhhh--hHHHHHHH----HHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 107 DNIACLGM--YMAWMEKV----TYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 107 ~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..+..... ........ +...........+.+.+++.+||+.+|.+||++.++.+
T Consensus 230 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~ 289 (338)
T cd07859 230 ETISRVRNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALA 289 (338)
T ss_pred HHHHHhhhhhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhc
Confidence 00000000 00000000 00001111123445789999999999999999887665
|
Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.8e-10 Score=102.27 Aligned_cols=239 Identities=15% Similarity=0.295 Sum_probs=152.8
Q ss_pred ccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCe-----EEEEEeCCC------------CCeEEEEEecCCC-CEEEEE
Q 008820 252 RDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS-----HVHTFKGHD------------HKVMAVVYVDEDQ-PLCISG 311 (552)
Q Consensus 252 ~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~-----~~~~~~~h~------------~~v~~v~~~~~~~-~~l~s~ 311 (552)
.+-|.++.|. |.+|+||..+|.|.++.-.... ....++.|. ..|..+.|.++++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4678999998 9999999999999999643221 233444453 4688899987654 466778
Q ss_pred cCCCcEEEEeCCCCCCCc---------------cc-----------------cccccCCCceeeeEEEEeeCCCEEEEee
Q 008820 312 DSGGGIFVWSFSFPLGHE---------------PL-----------------KKWNEEKDWRYSGIHALTTSGRYLYTGS 359 (552)
Q Consensus 312 ~~dg~i~vwd~~~~~~~~---------------~~-----------------~~~~~~~~~~~~~~~~~~~~~~~l~sgs 359 (552)
+.|.+|++|.+....... .+ +.+...+..+.. ..+++.|...++++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiN-SIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHIN-SISVNSDKETFLSA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEee-eeeecCccceEeec-
Confidence 899999999886432221 00 001111111111 11344455566665
Q ss_pred CCCcEEEEECCCCc-e--eEEecCC-----CCCeEEEEEe---CCEEEEEeCCCcEEEEECCCCce----eEEEecCCC-
Q 008820 360 GDRTIKAWSLLDGT-L--SCTMSGH-----KSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSL----LTVLEEDSS- 423 (552)
Q Consensus 360 ~dg~i~iwd~~~~~-~--~~~~~~h-----~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~- 423 (552)
.|=.|.+|+++--. . +..++.+ ..-|++..|+ .+.++-.+..|+|++-|+|.... ...+.....
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 56889999986322 1 2223333 2457888888 45888899999999999985321 111111110
Q ss_pred ----------CceEEEEEEcCCCCEEEEEECCCcEEEEeCC---cceeeeecccc------------eE---EEEEe--c
Q 008820 424 ----------GAVSSVLSLTAVQHTLVVSHESGSIKVWRND---KFMKSMQTHKG------------SV---FAVFL--E 473 (552)
Q Consensus 424 ----------~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~---~~~~~~~~h~~------------~v---~~v~~--~ 473 (552)
..+.. +.|+++|+++++-+. -+|++||+. +++.++..|.. .| ..++| +
T Consensus 263 ~~rsffseiIsSISD-vKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 263 SSRSFFSEIISSISD-VKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred cchhhHHHHhhhhhc-eEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 11222 589999999998654 489999963 46666666642 22 23456 5
Q ss_pred CCEEEEEeCCCeEEEEecCCC
Q 008820 474 GKWLFTGGWDKTVSVQELAGD 494 (552)
Q Consensus 474 ~~~l~sgs~dg~i~iwd~~~~ 494 (552)
+.+++|||..+..++++...+
T Consensus 341 ~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred cceEecccccceEEEecCCCC
Confidence 559999999999999996544
|
|
| >cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7 | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-12 Score=122.70 Aligned_cols=100 Identities=20% Similarity=0.396 Sum_probs=69.2
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....|++.|||||++ . ....+.++|+||||+++|+|++|. ||........
T Consensus 163 ~~~~~~~~~~~ape~~------~---------~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~------------- 214 (267)
T cd08229 163 AHSLVGTPYYMSPERI------H---------ENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLY------------- 214 (267)
T ss_pred cccccCCcCccCHHHh------c---------CCCccchhhHHHHHHHHHHHHhCCCCcccccchHH-------------
Confidence 3456899999999998 2 245668999999999999999999 9965332100
Q ss_pred hhhhhHHHHHHHHHH--HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 111 CLGMYMAWMEKVTYL--LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
......... +..........+.+++.+|+..+|.+||++.++.+.+.++
T Consensus 215 ------~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~ 265 (267)
T cd08229 215 ------SLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDITYVYDVAKRM 265 (267)
T ss_pred ------HHhhhhhcCCCCCCCcccccHHHHHHHHHhcCCCcccCCCHHHHHHHHhhh
Confidence 000000000 0001112334599999999999999999999998887764
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. |
| >cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-12 Score=125.58 Aligned_cols=115 Identities=15% Similarity=0.158 Sum_probs=67.8
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhh----hhccccCCC
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYI----RCVSTKASD 106 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~----~~~~~~~~~ 106 (552)
.....||+.|||||++ .| ...++.++|||||||++|||+||+ ||.+.+.... ........+
T Consensus 160 ~~~~~~~~~y~aPE~~------~~--------~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~ 225 (288)
T cd07871 160 YSNEVVTLWYRPPDVL------LG--------STEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTE 225 (288)
T ss_pred ccCceecccccChHHh------cC--------CcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCh
Confidence 4567899999999998 22 234568999999999999999999 9965443211 101111111
Q ss_pred chhhhhhhhHHHHHHH-HH----HHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 107 DNIACLGMYMAWMEKV-TY----LLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 107 ~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..|........+.... +. ...........++.+++.+||+.+|.+||++.++.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~ 284 (288)
T cd07871 226 ETWPGITSNEEFRSYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALR 284 (288)
T ss_pred HHhhccccchhhhccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 1121000000000000 00 000111223446889999999999999999887654
|
Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament |
| >cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.1e-13 Score=131.90 Aligned_cols=119 Identities=16% Similarity=0.139 Sum_probs=72.6
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.+|+. |+++.+..... .......||+.|||||++... .....++.++|||||||+||||++|+ ||
T Consensus 180 ~~kL~DfG~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~~~~~DiwSlGvilyelltG~~Pf 247 (370)
T cd05596 180 HLKLADFGTCMKMDANGM-VRCDTAVGTPDYISPEVLKSQ-----------GGDGYYGRECDWWSVGVFLYEMLVGDTPF 247 (370)
T ss_pred CEEEEeccceeeccCCCc-ccCCCCCCCcCeECHHHhccC-----------CCCCCCCCceeeeehhHHHHHHHhCCCCc
Confidence 35555 55555543321 113457899999999998211 01234678999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCC--CcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGC--RPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~--R~~~~~~~~ 160 (552)
.......+. ..+.........+.......++.+++.+||+.+|.+ |+++.++..
T Consensus 248 ~~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~ 303 (370)
T cd05596 248 YADSLVGTY-----------------SKIMDHKNSLTFPDDIEISKQAKDLICAFLTDREVRLGRNGVDEIKS 303 (370)
T ss_pred CCCCHHHHH-----------------HHHHcCCCcCCCCCcCCCCHHHHHHHHHHccChhhccCCCCHHHHhc
Confidence 765433110 011000000000111123446889999999998987 888777654
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in |
| >cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2 | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-12 Score=128.26 Aligned_cols=60 Identities=23% Similarity=0.527 Sum_probs=45.2
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|++ |+++...... ..+...||+.|||||++ .| ..++.++|||||||+||+|+||+ ||.
T Consensus 162 ~kl~Dfg~a~~~~~~~---~~~~~~~t~~y~aPE~~------~~---------~~~~~~~DiwSlG~il~el~tg~~pf~ 223 (359)
T cd07876 162 LKILDFGLARTACTNF---MMTPYVVTRYYRAPEVI------LG---------MGYKENVDIWSVGCIMGELVKGSVIFQ 223 (359)
T ss_pred EEEecCCCccccccCc---cCCCCcccCCCCCchhc------cC---------CCCCcchhhHHHHHHHHHHHhCCCCCC
Confidence 4555 4454443322 24567899999999998 32 45678999999999999999999 995
Q ss_pred H
Q 008820 91 K 91 (552)
Q Consensus 91 ~ 91 (552)
.
T Consensus 224 ~ 224 (359)
T cd07876 224 G 224 (359)
T ss_pred C
Confidence 4
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn |
| >cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1 | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-12 Score=126.95 Aligned_cols=122 Identities=12% Similarity=0.107 Sum_probs=73.8
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh--CC-C
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI--GE-Q 88 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt--g~-p 88 (552)
.|+. |+++.+...+.....+...+|+.|||||++ ..+.+++++|||||||++|||++ +. |
T Consensus 177 ~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~---------------~~~~~~~~~Dv~slG~~l~el~~~~~~~p 241 (304)
T cd05096 177 IKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECI---------------LMGKFTTASDVWAFGVTLWEILMLCKEQP 241 (304)
T ss_pred EEECCCccceecccCceeEecCcCCCCccccCHHHH---------------hcCCCCchhhhHHHHHHHHHHHHccCCCC
Confidence 4454 556555443322234556678999999998 23557789999999999999987 55 7
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHH
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~ 163 (552)
|.......+. . ........................+.+++.+|++.+|.+||++.++.+.+.
T Consensus 242 ~~~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~~~l~ 303 (304)
T cd05096 242 YGELTDEQVI--E-----------NAGEFFRDQGRQVYLFRPPPCPQGLYELMLQCWSRDCRERPSFSDIHAFLT 303 (304)
T ss_pred CCcCCHHHHH--H-----------HHHHHhhhccccccccCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHh
Confidence 7543222110 0 000000000000000111123345899999999999999999999877654
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k |
| >cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-12 Score=130.27 Aligned_cols=94 Identities=19% Similarity=0.271 Sum_probs=64.0
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....||+.|||||++ .+ ..++.++|||||||+||||++|+ ||.........
T Consensus 187 ~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~~~------------ 239 (350)
T cd05573 187 ANSTVGTPDYIAPEVL------RG---------TPYGLECDWWSLGVILYEMLYGFPPFYSDTLQETY------------ 239 (350)
T ss_pred ccccccCccccCHHHH------cC---------CCCCCceeeEecchhhhhhccCCCCCCCCCHHHHH------------
Confidence 4567899999999999 33 46778999999999999999999 99664432110
Q ss_pred hhhhhHHHHH--HHHHHHhhhhcCccccHHHHHHhhcccCCCCCcc-hhhHHH
Q 008820 111 CLGMYMAWME--KVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL-LTNVWK 160 (552)
Q Consensus 111 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~-~~~~~~ 160 (552)
..+.. .....+ .......++.+++.+||. +|.+||+ +.++.+
T Consensus 240 -----~~i~~~~~~~~~p--~~~~~~~~~~~li~~ll~-dp~~R~~s~~~ll~ 284 (350)
T cd05573 240 -----NKIINWKESLRFP--PDPPVSPEAIDLICRLLC-DPEDRLGSFEEIKS 284 (350)
T ss_pred -----HHHhccCCcccCC--CCCCCCHHHHHHHHHHcc-ChhhcCCCHHHHhc
Confidence 00000 000001 111134568899999997 9999999 666554
|
Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the |
| >PHA02882 putative serine/threonine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-12 Score=123.20 Aligned_cols=100 Identities=6% Similarity=-0.072 Sum_probs=67.0
Q ss_pred hccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhh-hhhhccccCCCchhhh
Q 008820 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELID-YIRCVSTKASDDNIAC 111 (552)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~-~~~~~~~~~~~~~~~~ 111 (552)
...||+.|||||++ . ...++.++|||||||+||||++|+ ||...... .+. .
T Consensus 192 ~~~gt~~y~ape~~------~---------~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~--~---------- 244 (294)
T PHA02882 192 LHRGTLYYAGLDAH------N---------GACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLI--H---------- 244 (294)
T ss_pred ccCCCccccCHHHh------C---------CCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHH--H----------
Confidence 45799999999998 3 355679999999999999999999 99664211 110 0
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHH
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l 162 (552)
............ ...........+.+++..|+..+|++||+..++.+.+
T Consensus 245 -~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~ 293 (294)
T PHA02882 245 -AAKCDFIKRLHE-GKIKIKNANKFIYDFIECVTKLSYEEKPDYDALIKIF 293 (294)
T ss_pred -HhHHHHHHHhhh-hhhccCCCCHHHHHHHHHHHhCCCCCCCCHHHHHHhh
Confidence 000011111110 0111122344588999999999999999999887754
|
|
| >cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-12 Score=123.18 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=74.3
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
+|+. |+++.+.............+++.|||||++ . ...+++++|||||||++|||++ |. ||
T Consensus 152 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~------~---------~~~~~~~~Dv~SlG~il~el~~~g~~p~ 216 (273)
T cd05035 152 VCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESL------A---------DRVYTSKSDVWAFGVTMWEIATRGQTPY 216 (273)
T ss_pred EEECCccceeeccccccccccccccCCccccCHhhc------c---------cCCCCcccchHHHHHHHHHHHhCCCCCC
Confidence 3444 455554433221112223457899999998 2 2456789999999999999999 88 98
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
.......+. ..... ............++.+++.+||+.+|.+||++.++.+.+..+
T Consensus 217 ~~~~~~~~~-----------------~~~~~---~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~ 272 (273)
T cd05035 217 PGVENHEIY-----------------DYLRH---GNRLKQPEDCLDELYDLMYSCWRADPKDRPTFTKLREVLENI 272 (273)
T ss_pred CCCCHHHHH-----------------HHHHc---CCCCCCCcCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence 653322110 00000 000011112344589999999999999999999999887764
|
Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-11 Score=116.01 Aligned_cols=284 Identities=16% Similarity=0.243 Sum_probs=179.8
Q ss_pred eEEEEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCC-------CCeEEEEEeCCCCCeEEEEEecCCCCEEEEEc
Q 008820 242 NVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK-------DFSHVHTFKGHDHKVMAVVYVDEDQPLCISGD 312 (552)
Q Consensus 242 ~~~~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~-------~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~ 312 (552)
.+++..+.||+..|+.++-- .+-+++++.|.+|++|.++ +..+..+++.|..+|.++.|..+.. ..++
T Consensus 725 ~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr---~i~S 801 (1034)
T KOG4190|consen 725 HIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR---SIAS 801 (1034)
T ss_pred eeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc---eeee
Confidence 45567789999999998654 8889999999999999885 3357788899999999999987544 3456
Q ss_pred CCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEee-CCCEE-EEeeCCCcEEEEECCCCceeEEec-----CCCCCe
Q 008820 313 SGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-SGRYL-YTGSGDRTIKAWSLLDGTLSCTMS-----GHKSAV 385 (552)
Q Consensus 313 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~-----~h~~~v 385 (552)
.||.|.+||.-.+........ ..+......+.++.. +...+ +.++...+|+++|.+.++-...++ +....+
T Consensus 802 cD~giHlWDPFigr~Laq~~d--apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~ 879 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLAQMED--APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALT 879 (1034)
T ss_pred ccCcceeecccccchhHhhhc--CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhe
Confidence 689999999654432221111 111112333445443 33434 444788999999999887665553 344567
Q ss_pred EEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEE-EeCCcceeeee-
Q 008820 386 STLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKV-WRNDKFMKSMQ- 461 (552)
Q Consensus 386 ~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i-wd~~~~~~~~~- 461 (552)
.++++. ++.++.+-.+|+|.+.|.++|+.+..++.-...... --.|....++....|.++.+ |..-..+..++
T Consensus 880 R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllq---laapsdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 880 RAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQ---LAAPSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred eEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhh---hcCchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 888887 669999999999999999999988777543221111 12355566777777888888 86322222221
Q ss_pred -cccceEEEEEecCCEEEEEeCCCeEEEEecCCC-eeeeeeccCCCcccCcceEEEEEeC-Ce-EEEEeCCCeEEE
Q 008820 462 -THKGSVFAVFLEGKWLFTGGWDKTVSVQELAGD-EFEEDVIPTGAIPCGSVITALLYWQ-GK-LFVGCADRTVKI 533 (552)
Q Consensus 462 -~h~~~v~~v~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~l~~~~-~~-l~s~s~Dg~v~i 533 (552)
....+..-+..-|.-|+++.....+.+|--... ....+......-...+..++++.-| +. ++.|...|.|.+
T Consensus 957 kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 957 KPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred CCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 111111112224666777777777888743211 1111111111111245566666664 33 778888888875
|
|
| >cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6 | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-12 Score=122.28 Aligned_cols=100 Identities=18% Similarity=0.374 Sum_probs=68.3
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....|++.|||||++ . ....+.++|+|||||++|||++|+ ||.......
T Consensus 163 ~~~~~~~~~~~aPE~~------~---------~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~-------------- 213 (267)
T cd08228 163 AHSLVGTPYYMSPERI------H---------ENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNL-------------- 213 (267)
T ss_pred HhcCCCCccccChhhh------c---------cCCCCchhhHHHHHHHHHHHhcCCCCCccccccH--------------
Confidence 3457899999999998 2 245668999999999999999999 985432210
Q ss_pred hhhhhHHHHHHHHH--HHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 111 CLGMYMAWMEKVTY--LLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 111 ~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
..+...+.. .+..........+.+++.+|+..+|++||+..++.+.+.++
T Consensus 214 -----~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~ 265 (267)
T cd08228 214 -----FSLCQKIEQCDYPPLPTEHYSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQM 265 (267)
T ss_pred -----HHHHHHHhcCCCCCCChhhcCHHHHHHHHHHCCCCcccCcCHHHHHHHHHHh
Confidence 000000000 00000011223488999999999999999999999887764
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase |
| >cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-12 Score=125.24 Aligned_cols=117 Identities=10% Similarity=0.064 Sum_probs=71.1
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh--CC-CchHHHh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI--GE-QFTKELI 94 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt--g~-pf~~~~~ 94 (552)
|+++.+...+.........+|+.|||||++. ...++.++|||||||++|||++ |. ||.....
T Consensus 175 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~ 239 (296)
T cd05051 175 GMSRNLYSSDYYRVQGRAPLPIRWMAWESVL---------------LGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTD 239 (296)
T ss_pred cceeecccCcceeecCcCCCCceecCHHHhh---------------cCCCCccchhhhhHHHHHHHHhcCCCCCCCCcCh
Confidence 4455444333222344567789999999982 2456789999999999999998 66 8854322
Q ss_pred hhhhhccccCCCchhhhhhhhHHH-HHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHH
Q 008820 95 DYIRCVSTKASDDNIACLGMYMAW-MEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (552)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~ 163 (552)
..+. ...... ...............+.++.+++.+||+.+|.+||++.++.+.+.
T Consensus 240 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~ 295 (296)
T cd05051 240 QQVI--------------ENAGHFFRDDGRQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIHLFLQ 295 (296)
T ss_pred HHHH--------------HHHHhccccccccccCCCccCCCHHHHHHHHHHhccChhcCCCHHHHHHHhc
Confidence 2110 000000 000000000111122346999999999999999999999877653
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6e-09 Score=104.66 Aligned_cols=273 Identities=12% Similarity=0.050 Sum_probs=174.6
Q ss_pred EEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCC----------Ce-EEEEEecCCCCEEEEEcCCCcEEEEeCCCCCC
Q 008820 259 AVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH----------KV-MAVVYVDEDQPLCISGDSGGGIFVWSFSFPLG 327 (552)
Q Consensus 259 ~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~----------~v-~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 327 (552)
.+.++.++.++.+|.+..+|.++|+.+........ .+ ..+.. .++ .++.++.+|.+..+|.++++.
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~-~v~v~~~~g~l~ald~~tG~~ 142 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGG-KVYIGSEKGQVYALNAEDGEV 142 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECC-EEEEEcCCCEEEEEECCCCCC
Confidence 34578888888899999999999999887653221 00 01111 123 456778899999999998876
Q ss_pred CccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCe-----EEEEEeCCEEEEEeCCC
Q 008820 328 HEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAV-----STLAVCNGVLYSGSRDG 402 (552)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v-----~~l~~~~~~l~s~~~dg 402 (552)
.......... .. +....+..++.++.+|.+..+|.++|+.++.+....... .+-...++.++.++.+|
T Consensus 143 ~W~~~~~~~~---~s----sP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g 215 (394)
T PRK11138 143 AWQTKVAGEA---LS----RPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNG 215 (394)
T ss_pred cccccCCCce---ec----CCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCC
Confidence 6554432110 01 111134567778889999999999999998876432111 12223366788888999
Q ss_pred cEEEEECCCCceeEEEecCCCCceEE-----EEEEcC--CCCEEEEEECCCcEEEEeCCcceeeeecccceEEEEEecCC
Q 008820 403 TIRLWSLSDHSLLTVLEEDSSGAVSS-----VLSLTA--VQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGK 475 (552)
Q Consensus 403 ~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~~~s~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~h~~~v~~v~~~~~ 475 (552)
.+..+|..+|+.+............. ....+| .+..+++++.+|.+..+|..+....++........+...+.
T Consensus 216 ~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~ 295 (394)
T PRK11138 216 RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFAVDGG 295 (394)
T ss_pred EEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcEEECC
Confidence 99999999998877654321100000 000111 24567777889999999965443333322222223345778
Q ss_pred EEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEecCCcceeEEE
Q 008820 476 WLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCNRQIPEIFSL 546 (552)
Q Consensus 476 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~~~~~~~~~~ 546 (552)
.++.++.+|.+..+|..+++......... .....+....++.++.++.||.|++.|.. +++.+.+.
T Consensus 296 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~sp~v~~g~l~v~~~~G~l~~ld~~-tG~~~~~~ 361 (394)
T PRK11138 296 RIYLVDQNDRVYALDTRGGVELWSQSDLL----HRLLTAPVLYNGYLVVGDSEGYLHWINRE-DGRFVAQQ 361 (394)
T ss_pred EEEEEcCCCeEEEEECCCCcEEEcccccC----CCcccCCEEECCEEEEEeCCCEEEEEECC-CCCEEEEE
Confidence 88889999999999999887665432211 11123334458899999999999999886 45555544
|
|
| >cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3 | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-12 Score=122.53 Aligned_cols=94 Identities=18% Similarity=0.324 Sum_probs=64.9
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....|++.|||||++ . ....+.++|+||||+++|+|++|+ ||.......+.
T Consensus 157 ~~~~~~~~~~~aPE~~------~---------~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~------------ 209 (255)
T cd08219 157 ACTYVGTPYYVPPEIW------E---------NMPYNNKSDIWSLGCILYELCTLKHPFQANSWKNLI------------ 209 (255)
T ss_pred cccccCCccccCHHHH------c---------cCCcCchhhhhhhchhheehhhccCCCCCCCHHHHH------------
Confidence 4567899999999998 2 245678999999999999999999 99764433110
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
....... ...........+.+++.+||+.+|.+||++.++..
T Consensus 210 -----~~~~~~~---~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~ 251 (255)
T cd08219 210 -----LKVCQGS---YKPLPSHYSYELRSLIKQMFKRNPRSRPSATTILS 251 (255)
T ss_pred -----HHHhcCC---CCCCCcccCHHHHHHHHHHHhCCcccCCCHHHHhh
Confidence 0000000 00001112334889999999999999999887654
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati |
| >cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-12 Score=123.84 Aligned_cols=116 Identities=15% Similarity=0.151 Sum_probs=71.1
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+..... ......||+.|+|||++.... .....++.++|+|||||++|||++|+ ||.
T Consensus 150 ~~l~Dfg~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~----------~~~~~~~~~~Dv~slGv~l~el~~g~~p~~ 217 (272)
T cd06637 150 VKLVDFGVSAQLDRTVG--RRNTFIGTPYWMAPEVIACDE----------NPDATYDFKSDLWSLGITAIEMAEGAPPLC 217 (272)
T ss_pred EEEccCCCceecccccc--cCCcccccccccCHhHhcccc----------CcCCCCCchhhHHHHHHHHHHHHhCCCCcc
Confidence 4455 45554433222 245678999999999982110 01234668999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
........ ...... . ............+.+++.+||..+|.+||++.++.+
T Consensus 218 ~~~~~~~~----------------~~~~~~--~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~ 268 (272)
T cd06637 218 DMHPMRAL----------------FLIPRN--P-APRLKSKKWSKKFQSFIESCLVKNHSQRPTTEQLMK 268 (272)
T ss_pred ccCHHHHH----------------HHHhcC--C-CCCCCCCCcCHHHHHHHHHHcCCChhhCCCHHHHhh
Confidence 43211000 000000 0 000001112335889999999999999999887654
|
Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ |
| >cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-12 Score=122.00 Aligned_cols=95 Identities=18% Similarity=0.143 Sum_probs=65.1
Q ss_pred hccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhh
Q 008820 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
...|+..|||||++ ....++.++|+|||||++|+|++ |+ ||.......+.
T Consensus 162 ~~~~~~~y~aPE~~---------------~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~------------- 213 (260)
T cd05070 162 GAKFPIKWTAPEAA---------------LYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVL------------- 213 (260)
T ss_pred CCCCCccccChHHH---------------hcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHH-------------
Confidence 45577899999998 22456789999999999999999 88 99653322110
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHH
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~ 163 (552)
..+... ...+.......++.+++.+|+..+|.+||++.++.+.+.
T Consensus 214 ----~~~~~~---~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~ 258 (260)
T cd05070 214 ----EQVERG---YRMPCPQDCPISLHELMLQCWKKDPEERPTFEYLQSFLE 258 (260)
T ss_pred ----HHHHcC---CCCCCCCcCCHHHHHHHHHHcccCcccCcCHHHHHHHHh
Confidence 000000 000111123445899999999999999999998877654
|
Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r |
| >cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase) | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-12 Score=123.00 Aligned_cols=114 Identities=14% Similarity=0.187 Sum_probs=75.8
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELID 95 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~ 95 (552)
|+++.+...+.........|+..|||||++ . ...++.++|||||||++||+++ |+ ||......
T Consensus 162 g~~~~~~~~~~~~~~~~~~~~~~y~apE~~------~---------~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~ 226 (280)
T cd05043 162 ALSRDLFPMDYHCLGDNENRPVKWMALESL------V---------NKEYSSASDVWSFGVLLWELMTLGQTPYVEIDPF 226 (280)
T ss_pred CCcccccCCceEEeCCCCCcchhccCHHHH------h---------cCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCHH
Confidence 666655444332223445678899999998 2 2456789999999999999999 99 99764333
Q ss_pred hhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 96 YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
.+. ...... ...........++.+++.+|+..+|++||+..++.+.+..+.
T Consensus 227 ~~~-----------------~~~~~~---~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~~ 277 (280)
T cd05043 227 EMA-----------------AYLKDG---YRLAQPINCPDELFAVMACCWALDPEERPSFSQLVQCLTDFH 277 (280)
T ss_pred HHH-----------------HHHHcC---CCCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence 111 000000 000011112335889999999999999999999998887654
|
Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It |
| >PHA03212 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.4e-12 Score=126.84 Aligned_cols=44 Identities=16% Similarity=0.306 Sum_probs=37.7
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
...+.||+.|||||++ . ...+++++|||||||+||||+||+ ||-
T Consensus 240 ~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwSlGvil~elltg~~p~~ 284 (391)
T PHA03212 240 YYGWAGTIATNAPELL------A---------RDPYGPAVDIWSAGIVLFEMATCHDSLF 284 (391)
T ss_pred cccccCccCCCChhhh------c---------CCCCCcHHHHHHHHHHHHHHHHCCCCcC
Confidence 4567899999999998 2 245678999999999999999999 873
|
|
| >cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-12 Score=123.22 Aligned_cols=118 Identities=15% Similarity=0.183 Sum_probs=75.6
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
.|.+ |+++.+...+.........+++.|||||++ ....++.++|||||||++|||++ |. ||
T Consensus 171 ~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~---------------~~~~~~~~~Di~slG~il~el~~~g~~p~ 235 (293)
T cd05053 171 MKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEAL---------------FDRVYTHQSDVWSFGVLLWEIFTLGGSPY 235 (293)
T ss_pred EEeCccccccccccccceeccCCCCCCccccCHHHh---------------ccCCcCcccceeehhhHHHHHhcCCCCCC
Confidence 3444 455544433221112334567889999998 22456789999999999999998 88 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
.......+. ...... ...........++.+++.+|+..+|.+||++.++.+.+..+.
T Consensus 236 ~~~~~~~~~-----------------~~~~~~---~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~~ 292 (293)
T cd05053 236 PGIPVEELF-----------------KLLKEG---YRMEKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRML 292 (293)
T ss_pred CCCCHHHHH-----------------HHHHcC---CcCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHhh
Confidence 764433211 000000 000111123446889999999999999999999999887653
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, |
| >cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5 | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-12 Score=123.43 Aligned_cols=92 Identities=16% Similarity=0.154 Sum_probs=62.8
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
....||+.|||||++ . ...++.++|+|||||++|||++|+ ||........
T Consensus 159 ~~~~g~~~~~aPE~~------~---------~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~-------------- 209 (285)
T cd05632 159 RGRVGTVGYMAPEVL------N---------NQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVK-------------- 209 (285)
T ss_pred cCCCCCcCccChHHh------c---------CCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHH--------------
Confidence 456899999999998 2 255678999999999999999999 9965322100
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchh
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~ 156 (552)
...+...+.............++.+++.+||+.+|.+||++.
T Consensus 210 ---~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~ 251 (285)
T cd05632 210 ---REEVDRRVLETEEVYSAKFSEEAKSICKMLLTKDPKQRLGCQ 251 (285)
T ss_pred ---HHHHHHhhhccccccCccCCHHHHHHHHHHccCCHhHcCCCc
Confidence 011111111111111222344588999999999999999954
|
Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-09 Score=107.26 Aligned_cols=231 Identities=8% Similarity=0.065 Sum_probs=140.4
Q ss_pred CcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEc--CCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEe
Q 008820 272 KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGD--SGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALT 349 (552)
Q Consensus 272 g~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (552)
..|.+||.+.... +.+..+...+.+.+|+|++..++++.. .+..+.+|++.+++.. .+..+.... ....++
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~~~-----~~~~~S 251 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHN-----GAPAFS 251 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCCCCCc-----CCeEEC
Confidence 3689999875443 444556778999999999887665543 3457899998765422 222222211 124799
Q ss_pred eCCCEEEEe-eCCC--cEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeCC-Cc--EEEEECCCCceeEEEecC
Q 008820 350 TSGRYLYTG-SGDR--TIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRD-GT--IRLWSLSDHSLLTVLEED 421 (552)
Q Consensus 350 ~~~~~l~sg-s~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~d-g~--i~iwd~~~~~~~~~~~~~ 421 (552)
|+|+.|+.. +.+| .|++||+.+++.... ..+...+....|+ ++ .|+..+.+ +. |..+|+.+++.. .+...
T Consensus 252 PDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~ 329 (429)
T PRK03629 252 PDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWE 329 (429)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecC
Confidence 999977654 4454 589999988876544 3344567788999 43 66665543 44 555577666543 33222
Q ss_pred CCCceEEEEEEcCCCCEEEEEECC---CcEEEEeCCc-ceeeeec-ccceEEEEEecCCEEEEEeCCCe---EEEEecCC
Q 008820 422 SSGAVSSVLSLTAVQHTLVVSHES---GSIKVWRNDK-FMKSMQT-HKGSVFAVFLEGKWLFTGGWDKT---VSVQELAG 493 (552)
Q Consensus 422 ~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iwd~~~-~~~~~~~-h~~~v~~v~~~~~~l~sgs~dg~---i~iwd~~~ 493 (552)
. .. .....++|||++++..+.+ ..|++||+.. ....+.. +...-.++++||++|+.++.++. +.++++.+
T Consensus 330 ~-~~-~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 330 G-SQ-NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred C-CC-ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 1 12 2235899999998876543 3578888643 2333322 21222345679999999988764 67778865
Q ss_pred CeeeeeeccCCCcccCcceEEEEEeC
Q 008820 494 DEFEEDVIPTGAIPCGSVITALLYWQ 519 (552)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~v~~l~~~~ 519 (552)
...... ... ...+...+|+|
T Consensus 408 ~~~~~l-~~~-----~~~~~~p~Wsp 427 (429)
T PRK03629 408 RFKARL-PAT-----DGQVKFPAWSP 427 (429)
T ss_pred CCeEEC-ccC-----CCCcCCcccCC
Confidence 533322 211 33455666664
|
|
| >cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1 | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.4e-12 Score=123.98 Aligned_cols=97 Identities=18% Similarity=0.232 Sum_probs=67.7
Q ss_pred ccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhhh
Q 008820 35 FLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIACL 112 (552)
Q Consensus 35 ~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~~ 112 (552)
..+++.|||||++ .+ ..++.++|+|||||++|||++ |. ||.......+.
T Consensus 202 ~~~~~~y~aPE~~------~~---------~~~~~~~DvwslG~~l~el~~~g~~p~~~~~~~~~~-------------- 252 (307)
T cd05098 202 GRLPVKWMAPEAL------FD---------RIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELF-------------- 252 (307)
T ss_pred CCCccceeChHHh------cc---------CCCCcHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHH--------------
Confidence 3456899999998 22 456789999999999999998 77 98664433111
Q ss_pred hhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 113 GMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
...... ...........++.+++.+||..+|.+||++.++.+.+.++.
T Consensus 253 ---~~~~~~---~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~~ 300 (307)
T cd05098 253 ---KLLKEG---HRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIL 300 (307)
T ss_pred ---HHHHcC---CCCCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHH
Confidence 000000 000111123445889999999999999999999999888765
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4 | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-12 Score=121.47 Aligned_cols=94 Identities=20% Similarity=0.350 Sum_probs=65.1
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....|++.|||||++ . ....+.++|||||||++|+|++|+ ||.......+.
T Consensus 159 ~~~~~~~~~y~aPE~~------~---------~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~------------ 211 (257)
T cd08223 159 ASTLIGTPYYMSPELF------S---------NKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLV------------ 211 (257)
T ss_pred cccccCCcCccChhHh------c---------CCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHH------------
Confidence 4567899999999998 2 345678999999999999999999 99764433110
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
....... ...........+.+++.+|++.+|.+||++.++.+
T Consensus 212 ----~~~~~~~----~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~ 253 (257)
T cd08223 212 ----YRIIEGK----LPPMPKDYSPELGELIATMLSKRPEKRPSVKSILR 253 (257)
T ss_pred ----HHHHhcC----CCCCccccCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 0000000 00011123345889999999999999999877654
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. |
| >cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.4e-12 Score=121.71 Aligned_cols=113 Identities=12% Similarity=0.085 Sum_probs=72.4
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELID 95 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~ 95 (552)
|+++.+.............+++.|||||++ . ...++.++|||||||++|||++ |+ ||......
T Consensus 157 g~~~~~~~~~~~~~~~~~~~~~~~~~pe~~------~---------~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~ 221 (272)
T cd05075 157 GLSKKIYNGDYYRQGRIAKMPVKWIAIESL------A---------DRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENS 221 (272)
T ss_pred CcccccCcccceecCCcccCCcccCCHHHc------c---------CCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCHH
Confidence 555555433221112233567899999998 2 3556789999999999999999 78 99653322
Q ss_pred hhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 96 YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
.+. ....... ...........+.+++.+||+.+|++||++.++.+.+..+
T Consensus 222 ~~~-----------------~~~~~~~---~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~~ 271 (272)
T cd05075 222 EIY-----------------DYLRQGN---RLKQPPDCLDGLYSLMSSCWLLNPKDRPSFETLRCELEKA 271 (272)
T ss_pred HHH-----------------HHHHcCC---CCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 110 0000000 0001112234588999999999999999999998887653
|
Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor |
| >cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-12 Score=123.00 Aligned_cols=99 Identities=14% Similarity=0.184 Sum_probs=69.6
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
....+++.|||||++ . ...++.++|||||||++|||+| |+ ||.+.....+.
T Consensus 187 ~~~~~~~~y~apE~~------~---------~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~------------ 239 (290)
T cd05045 187 SKGRIPVKWMAIESL------F---------DHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPERLF------------ 239 (290)
T ss_pred cCCCCCccccCHHHH------c---------cCCcchHhHHHHHHHHHHHHHhcCCCCCCCCCHHHHH------------
Confidence 344668899999998 2 2456789999999999999999 99 99764433211
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
... .... ..........++.+++.+||+.+|.+||++.++...+.++.
T Consensus 240 -----~~~-~~~~--~~~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~~ 287 (290)
T cd05045 240 -----NLL-KTGY--RMERPENCSEEMYNLMLTCWKQEPDKRPTFADISKELEKMM 287 (290)
T ss_pred -----HHH-hCCC--CCCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHHHH
Confidence 000 0000 00111223346889999999999999999999999888765
|
Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi |
| >cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3 | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.7e-12 Score=126.38 Aligned_cols=61 Identities=18% Similarity=0.399 Sum_probs=46.0
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|++ |+++...... ......||+.|||||++ .| ..++.++|||||||+||+|++|+ ||.
T Consensus 158 ~kl~Dfg~~~~~~~~~---~~~~~~~t~~y~aPE~~------~~---------~~~~~~~DiwslG~il~el~~g~~pf~ 219 (355)
T cd07874 158 LKILDFGLARTAGTSF---MMTPYVVTRYYRAPEVI------LG---------MGYKENVDIWSVGCIMGEMVRHKILFP 219 (355)
T ss_pred EEEeeCcccccCCCcc---ccCCccccCCccCHHHH------cC---------CCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence 4555 5555443332 24567899999999998 32 45678999999999999999999 996
Q ss_pred HH
Q 008820 91 KE 92 (552)
Q Consensus 91 ~~ 92 (552)
+.
T Consensus 220 ~~ 221 (355)
T cd07874 220 GR 221 (355)
T ss_pred CC
Confidence 53
|
Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-10 Score=110.09 Aligned_cols=159 Identities=17% Similarity=0.229 Sum_probs=118.1
Q ss_pred eecCcceEEEeeCCCeEEEEEe-----------ec--CccceEEEEEc---CCEEEEEeCCCcEEEEeCCC---------
Q 008820 227 AAGGVKDLVNGLSKGNVKFKDL-----------QG--HRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKD--------- 281 (552)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~l-----------~~--H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~--------- 281 (552)
..+.+-.++.+...+.+++.+. .. .+..|+|+.|- ...++.+-.+|.+.+||.+-
T Consensus 181 a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~ 260 (636)
T KOG2394|consen 181 ATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSY 260 (636)
T ss_pred cCCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcc
Confidence 3455666777777777665542 11 34789999997 66777788899999997531
Q ss_pred -----Ce--------------EEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCcee
Q 008820 282 -----FS--------------HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRY 342 (552)
Q Consensus 282 -----~~--------------~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 342 (552)
+. ++..+.--.+.|+..+|+|++ .+||+.+.||.+||+|+.+.......+.+.+.
T Consensus 261 ~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG----- 334 (636)
T KOG2394|consen 261 QALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQELLGVMKSYFGG----- 334 (636)
T ss_pred cccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEEEeeccHHHHHHHHHhhccc-----
Confidence 11 111122234578899999955 58899999999999999875544444433322
Q ss_pred eeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe
Q 008820 343 SGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC 391 (552)
Q Consensus 343 ~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~ 391 (552)
--+.+++|||++|++|++|-.|.+|.+..++.+..=.+|++.|+.++|+
T Consensus 335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred eEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 2356899999999999999999999999999999999999999999996
|
|
| >cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2 | Back alignment and domain information |
|---|
Probab=99.26 E-value=3e-12 Score=122.51 Aligned_cols=118 Identities=13% Similarity=0.139 Sum_probs=75.7
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
+|.+ |+++.+...........-.+++.|||||++ . ...++.++|||||||+||||++ |. ||
T Consensus 148 ~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~------~---------~~~~~~~~Di~slG~~l~el~t~g~~p~ 212 (279)
T cd05109 148 VKITDFGLARLLDIDETEYHADGGKVPIKWMALESI------L---------HRRFTHQSDVWSYGVTVWELMTFGAKPY 212 (279)
T ss_pred EEECCCCceeecccccceeecCCCccchhhCCHHHh------c---------cCCCCchhHHHHHHHHHHHHHcCCCCCC
Confidence 4655 555555433222112334567899999998 2 3557789999999999999998 88 98
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
.......+. ..+.... ..+........+.+++.+|++.+|++||++.++.+.+..+.
T Consensus 213 ~~~~~~~~~-----------------~~~~~~~---~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~ 269 (279)
T cd05109 213 DGIPAREIP-----------------DLLEKGE---RLPQPPICTIDVYMIMVKCWMIDSECRPRFRELVDEFSRMA 269 (279)
T ss_pred CCCCHHHHH-----------------HHHHCCC---cCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence 653322110 0000000 00011123345889999999999999999999998877664
|
Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve |
| >cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1 | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-12 Score=125.06 Aligned_cols=96 Identities=16% Similarity=0.252 Sum_probs=64.3
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.+...|++.|||||.+ . ....++++|||||||++|+|++|+ ||.........
T Consensus 173 ~~~~~~~~~y~aPE~~------~---------~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~~~------------ 225 (296)
T cd06654 173 RSTMVGTPYWMAPEVV------T---------RKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRAL------------ 225 (296)
T ss_pred cCcccCCccccCHHHH------c---------CCCCCccchHHHHHHHHHHHHhCCCCCCCCCHHHhH------------
Confidence 3456899999999998 2 244568999999999999999999 99654322100
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
........+ +..........+.+++.+||..+|.+||++.++..
T Consensus 226 ----~~~~~~~~~--~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~eil~ 269 (296)
T cd06654 226 ----YLIATNGTP--ELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQ 269 (296)
T ss_pred ----HHHhcCCCC--CCCCccccCHHHHHHHHHHCcCCcccCcCHHHHhh
Confidence 000000000 00001112334889999999999999999887766
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-12 Score=122.52 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=71.6
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELID 95 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~ 95 (552)
|+++.+...+.....+...||+.|+|||++ .....++++|||||||++|||+| |+ ||......
T Consensus 164 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~---------------~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~ 228 (277)
T cd05032 164 GMTRDIYETDYYRKGGKGLLPVRWMAPESL---------------KDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNE 228 (277)
T ss_pred ccchhhccCcccccCCCCCccccccCHHHH---------------hcCCCCcccchHHHHHHHHHhhccCCCCCccCCHH
Confidence 445554443322223456678999999998 23456789999999999999998 88 99654333
Q ss_pred hhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHH
Q 008820 96 YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (552)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l 162 (552)
.+. ...... ............+.+++.+||+.+|++||++.++...+
T Consensus 229 ~~~-----------------~~~~~~---~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l 275 (277)
T cd05032 229 EVL-----------------KFVIDG---GHLDLPENCPDKLLELMRMCWQYNPKMRPTFLEIVSSL 275 (277)
T ss_pred HHH-----------------HHHhcC---CCCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHh
Confidence 110 000000 00001111234588999999999999999999887764
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological |
| >cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.8e-12 Score=124.12 Aligned_cols=119 Identities=13% Similarity=0.145 Sum_probs=77.6
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
+|+. |+++.+...+...-.....+++.|||||++ ....++.++|||||||+||||++ |+ ||
T Consensus 148 ~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~---------------~~~~~~~~~Di~slGv~l~el~t~g~~p~ 212 (316)
T cd05108 148 VKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESI---------------LHRIYTHQSDVWSYGVTVWELMTFGSKPY 212 (316)
T ss_pred EEEccccccccccCCCcceeccCCccceeecChHHh---------------ccCCCCchhhhHHHHHHHHHHHcCCCCCC
Confidence 4555 556655443322112334457889999998 23556789999999999999998 99 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhhc
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~~ 167 (552)
.+.....+. ....... ..+.......++.+++.+|++.+|.+||++.++...+..+..
T Consensus 213 ~~~~~~~~~------------------~~~~~~~--~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~~ 270 (316)
T cd05108 213 DGIPASEIS------------------SILEKGE--RLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR 270 (316)
T ss_pred CCCCHHHHH------------------HHHhCCC--CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHc
Confidence 764333111 0000000 001112234458899999999999999999999998877653
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor |
| >cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.4e-12 Score=120.94 Aligned_cols=112 Identities=18% Similarity=0.145 Sum_probs=72.5
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELID 95 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~ 95 (552)
|+++.+...+.. ......|++.|||||++ ....++.++|||||||++|||+| |+ ||......
T Consensus 147 g~~~~~~~~~~~-~~~~~~~~~~y~~PE~~---------------~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~ 210 (262)
T cd05071 147 GLARLIEDNEYT-ARQGAKFPIKWTAPEAA---------------LYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR 210 (262)
T ss_pred Cceeeccccccc-cccCCcccceecCHhHh---------------ccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCChH
Confidence 445444433321 12345678899999998 23556789999999999999999 78 99654322
Q ss_pred hhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 96 YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
.+. ...... ............+.+++.+|++.+|.+||+..++...+...
T Consensus 211 ~~~-----------------~~~~~~---~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~~ 260 (262)
T cd05071 211 EVL-----------------DQVERG---YRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY 260 (262)
T ss_pred HHH-----------------HHHhcC---CCCCCccccCHHHHHHHHHHccCCcccCCCHHHHHHHHHHh
Confidence 110 000000 00000111233588999999999999999999988877654
|
Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo |
| >cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1 | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-12 Score=129.32 Aligned_cols=69 Identities=20% Similarity=0.310 Sum_probs=47.9
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+...... -.....||+.|||||++.... ....++.++|||||||+||||++|+ ||.
T Consensus 181 ikL~DfG~a~~~~~~~~~-~~~~~~gt~~y~aPE~l~~~~-----------~~~~~~~~~DiwSlGvilyell~G~~Pf~ 248 (371)
T cd05622 181 LKLADFGTCMKMNKEGMV-RCDTAVGTPDYISPEVLKSQG-----------GDGYYGRECDWWSVGVFLYEMLVGDTPFY 248 (371)
T ss_pred EEEEeCCceeEcCcCCcc-cccCcccCccccCHHHHhccC-----------CCccCCCccceeehhHHHHHHHhCCCCCC
Confidence 4555 556555433221 134678999999999993110 1134678999999999999999999 997
Q ss_pred HHHh
Q 008820 91 KELI 94 (552)
Q Consensus 91 ~~~~ 94 (552)
..+.
T Consensus 249 ~~~~ 252 (371)
T cd05622 249 ADSL 252 (371)
T ss_pred CCCH
Confidence 6543
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an |
| >cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.3e-12 Score=123.11 Aligned_cols=113 Identities=13% Similarity=0.187 Sum_probs=75.4
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELID 95 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~ 95 (552)
|+++.+.............|++.|||||++ . ...++.++|||||||+||+|++ |. ||......
T Consensus 182 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~ 246 (304)
T cd05101 182 GLARDVNNIDYYKKTTNGRLPVKWMAPEAL------F---------DRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVE 246 (304)
T ss_pred ccceecccccccccccCCCCCceeeCchhh------c---------cCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHH
Confidence 455555433322223445678899999998 2 2456789999999999999998 77 99764433
Q ss_pred hhhhccccCCCchhhhhhhhHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 96 YIRCVSTKASDDNIACLGMYMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
.+. ....... .........++.+++.+|++.+|.+||++.++.+.+.++.
T Consensus 247 ~~~---------------------~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~ 297 (304)
T cd05101 247 ELF---------------------KLLKEGHRMDKPANCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRIL 297 (304)
T ss_pred HHH---------------------HHHHcCCcCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHHH
Confidence 211 0000000 0011123345889999999999999999999999988765
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1 | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-12 Score=126.96 Aligned_cols=47 Identities=26% Similarity=0.514 Sum_probs=39.3
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELI 94 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~ 94 (552)
....||+.|||||++ .| ..++.++|+|||||++|||++|+ ||.....
T Consensus 160 ~~~~~~~~y~aPE~~------~~---------~~~~~~~DvwslG~il~~l~~g~~p~~~~~~ 207 (333)
T cd06650 160 NSFVGTRSYMSPERL------QG---------THYSVQSDIWSMGLSLVEMAIGRYPIPPPDA 207 (333)
T ss_pred ccCCCCccccCHHHh------cC---------CCCCcHHHHHHHHHHHHHHHHCCCCCCCcch
Confidence 456899999999998 32 45678999999999999999999 9965443
|
Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst |
| >cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6 | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-12 Score=124.06 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=64.0
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
....|++.|+|||++... ......++.++|+|||||++|||++|+ ||.........
T Consensus 179 ~~~~~~~~y~aPE~l~~~----------~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~~~~------------- 235 (282)
T cd06636 179 NTFIGTPYWMAPEVIACD----------ENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRAL------------- 235 (282)
T ss_pred CcccccccccCHhhcCcc----------cCcCcCCCcccchhHHHHHHHHHHhCCCCccccCHHhhh-------------
Confidence 457799999999998211 011345668999999999999999999 99653322100
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.. . .. ...+.........++.+++.+||+.+|.+||+..++.+
T Consensus 236 ---~~-~-~~-~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~ 278 (282)
T cd06636 236 ---FL-I-PR-NPPPKLKSKKWSKKFIDFIEGCLVKNYLSRPSTEQLLK 278 (282)
T ss_pred ---hh-H-hh-CCCCCCcccccCHHHHHHHHHHhCCChhhCcCHHHHhc
Confidence 00 0 00 00000011123345899999999999999999877644
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5e-10 Score=115.47 Aligned_cols=266 Identities=15% Similarity=0.144 Sum_probs=171.6
Q ss_pred cceEEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEE------eCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCC
Q 008820 253 DCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTF------KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPL 326 (552)
Q Consensus 253 ~~V~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~------~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 326 (552)
+++++.++-.++|+.|+. -.|.+||+.++..+..+ ..|...=.--.+ + ..++++..-+.+..=+....
T Consensus 8 ~~l~~~~~~~~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~---~-~~~v~~~~~~~v~~~~~~~~- 81 (967)
T KOG0974|consen 8 GPLNLPQLVSDYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLL---S-GKIVTCAKSDEVYVKEASNQ- 81 (967)
T ss_pred ccccchhhccceeeecCC-CceEEeeCCchhHhhhhhhhcccccccccccceec---c-ceEEEEEeecceeecchhhh-
Confidence 445555554567776654 36999999988665443 334111000011 1 13444444333333222110
Q ss_pred CCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCe-EE-EEEe--CC--EEEEEeC
Q 008820 327 GHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAV-ST-LAVC--NG--VLYSGSR 400 (552)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v-~~-l~~~--~~--~l~s~~~ 400 (552)
....+... . . -..+......++.++.++.+.+||...+.....+....... .+ +-+- .+ ++++|+.
T Consensus 82 ---~~~~~s~w---i-~-g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv 153 (967)
T KOG0974|consen 82 ---IIERFSDW---I-F-GAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSV 153 (967)
T ss_pred ---hhhhcccc---c-c-ccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccc
Confidence 01111110 0 0 03455667789999999999999998877776665332211 11 1121 22 8999999
Q ss_pred CCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc---ceeeeecccceEEEEEecCCEE
Q 008820 401 DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK---FMKSMQTHKGSVFAVFLEGKWL 477 (552)
Q Consensus 401 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~---~~~~~~~h~~~v~~v~~~~~~l 477 (552)
-+.|.+|+....+.-..+.+| .+.+.. +.++.||+++++.+.|.++++|++.. .....-+|+..|..+.+....+
T Consensus 154 ~~~iivW~~~~dn~p~~l~GH-eG~iF~-i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i 231 (967)
T KOG0974|consen 154 FGEIIVWKPHEDNKPIRLKGH-EGSIFS-IVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRI 231 (967)
T ss_pred cccEEEEeccccCCcceeccc-CCceEE-EEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecccee
Confidence 999999999743333335554 566666 58899999999999999999998654 2235568999999999866699
Q ss_pred EEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCe--EEEEeCCCeEEEEEecCC
Q 008820 478 FTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK--LFVGCADRTVKIALCNRQ 539 (552)
Q Consensus 478 ~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~s~s~Dg~v~iw~~~~~ 539 (552)
+|++.|.+.++|+.+...+.....+. ...+..++..++. ++|++.||.+++|++...
T Consensus 232 ~t~gedctcrvW~~~~~~l~~y~~h~-----g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVNGTQLEVYDEHS-----GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEeccceEEEEEecccceehhhhhhh-----hcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99999999999988876665322222 4558888888654 889999999999998743
|
|
| >cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4 | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.7e-12 Score=123.35 Aligned_cols=113 Identities=14% Similarity=0.195 Sum_probs=73.4
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELID 95 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~ 95 (552)
|+++.+.............+++.|||||++ . ...++.++|||||||++|||++ |. ||......
T Consensus 179 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~---------~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~ 243 (314)
T cd05099 179 GLARGVHDIDYYKKTSNGRLPVKWMAPEAL------F---------DRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPVE 243 (314)
T ss_pred cccccccccccccccccCCCCccccCHHHH------c---------cCCcCccchhhHHHHHHHHHHhCCCCCCCCCCHH
Confidence 555555433221112233456789999998 2 2456789999999999999999 88 99664332
Q ss_pred hhhhccccCCCchhhhhhhhHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 96 YIRCVSTKASDDNIACLGMYMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
.+. ....... .........++.+++.+||..+|.+||++.++...+.++.
T Consensus 244 ~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~ 294 (314)
T cd05099 244 ELF---------------------KLLREGHRMDKPSNCTHELYMLMRECWHAVPTQRPTFKQLVEALDKVL 294 (314)
T ss_pred HHH---------------------HHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHH
Confidence 111 0000000 0011122345889999999999999999999998887764
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-12 Score=121.01 Aligned_cols=95 Identities=13% Similarity=0.135 Sum_probs=66.0
Q ss_pred ccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhhh
Q 008820 35 FLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIACL 112 (552)
Q Consensus 35 ~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~~ 112 (552)
-.+++.|||||.+ .....+.++|+|||||++|||++ |+ ||.......+.
T Consensus 158 ~~~~~~y~aPE~~---------------~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~-------------- 208 (257)
T cd05116 158 GKWPVKWYAPECM---------------NYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNEVT-------------- 208 (257)
T ss_pred CCCCccccCHhHh---------------ccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHH--------------
Confidence 3457899999998 22456689999999999999998 99 99653322110
Q ss_pred hhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHh
Q 008820 113 GMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (552)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~ 164 (552)
....... ..........++.+++.+|++.+|++||++.++.+.+..
T Consensus 209 ---~~i~~~~---~~~~~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~ 254 (257)
T cd05116 209 ---QMIESGE---RMECPQRCPPEMYDLMKLCWTYGVDERPGFAVVELRLRN 254 (257)
T ss_pred ---HHHHCCC---CCCCCCCCCHHHHHHHHHHhccCchhCcCHHHHHHHHhc
Confidence 0000000 001112244569999999999999999999998887654
|
Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio |
| >cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-12 Score=130.36 Aligned_cols=46 Identities=26% Similarity=0.498 Sum_probs=39.5
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHH
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKEL 93 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~ 93 (552)
..+.||+.|||||++ . ...++.++|||||||+||||++|+ ||....
T Consensus 202 ~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwSlGvilyell~G~~Pf~~~~ 248 (376)
T cd05598 202 HSLVGTPNYIAPEVL------L---------RTGYTQLCDWWSVGVILYEMLVGQPPFLADT 248 (376)
T ss_pred cccCCCccccCHHHH------c---------CCCCCcceeeeeccceeeehhhCCCCCCCCC
Confidence 467899999999999 2 245678999999999999999999 997644
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. |
| >KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-12 Score=115.98 Aligned_cols=115 Identities=18% Similarity=0.160 Sum_probs=83.0
Q ss_pred hcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchH
Q 008820 15 KVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTK 91 (552)
Q Consensus 15 ~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~ 91 (552)
|.+ ||||+-.... .+.+-+=||-|.|||++ ...+++..||+|||||++|-||+|. ||..
T Consensus 204 KLtDfGFAK~t~~~~---~L~TPc~TPyYvaPevl---------------g~eKydkscdmwSlgVimYIlLCGyPPFYS 265 (400)
T KOG0604|consen 204 KLTDFGFAKETQEPG---DLMTPCFTPYYVAPEVL---------------GPEKYDKSCDMWSLGVIMYILLCGYPPFYS 265 (400)
T ss_pred EecccccccccCCCc---cccCCcccccccCHHHh---------------CchhcCCCCCccchhHHHHHhhcCCCcccc
Confidence 444 7786655422 36667779999999998 4577889999999999999999999 9965
Q ss_pred HHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 92 ELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..-..| ...+...++..-.++|.+.|.-.+...+++|+++|..+|.+|-+..++..
T Consensus 266 ~hg~ai-------------spgMk~rI~~gqy~FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~ 321 (400)
T KOG0604|consen 266 NHGLAI-------------SPGMKRRIRTGQYEFPEPEWSCVSEAAKDLIRKLLKTEPTERLTIEEVMD 321 (400)
T ss_pred cCCccC-------------ChhHHhHhhccCccCCChhHhHHHHHHHHHHHHHhcCCchhheeHHHhhc
Confidence 322111 11333444444455555555555566899999999999999999887655
|
|
| >cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase | Back alignment and domain information |
|---|
Probab=99.25 E-value=4e-12 Score=119.98 Aligned_cols=96 Identities=16% Similarity=0.194 Sum_probs=66.4
Q ss_pred hccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhh
Q 008820 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
...+++.|||||++ . ...++.++|||||||++|||++ |+ ||.......+.
T Consensus 158 ~~~~~~~y~aPE~~------~---------~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~~~~~------------- 209 (256)
T cd05082 158 TGKLPVKWTAPEAL------R---------EKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVV------------- 209 (256)
T ss_pred CCccceeecCHHHH------c---------cCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHH-------------
Confidence 44567899999998 2 2456789999999999999998 99 99654433111
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHh
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~ 164 (552)
...... ............+.+++.+|++.+|++||++.++.+.+..
T Consensus 210 ----~~~~~~---~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~ 255 (256)
T cd05082 210 ----PRVEKG---YKMDAPDGCPPVVYDVMKQCWHLDAATRPSFLQLREQLEH 255 (256)
T ss_pred ----HHHhcC---CCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHhc
Confidence 000000 0001112234458899999999999999999998887654
|
Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re |
| >cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-12 Score=127.79 Aligned_cols=119 Identities=13% Similarity=0.093 Sum_probs=70.6
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
+|+. |+++.+...... ......||+.|||||++...... ....++.++|||||||+||||++|+ ||.
T Consensus 141 ~kL~Dfg~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~---------~~~~~~~~~DiwslG~il~el~~g~~Pf~ 210 (330)
T cd05601 141 IKLADFGSAARLTANKMV-NSKLPVGTPDYIAPEVLTTMNGD---------GKGTYGVECDWWSLGVIAYEMIYGRSPFH 210 (330)
T ss_pred EEeccCCCCeECCCCCce-eeecccCCccccCHHHhcccccc---------ccCCCCCcceeecccceeeeeccCCCCCC
Confidence 4444 555555433221 23445899999999998211100 1245678999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..+..... ..+.........+.......++.+++.+||+ +|.+||+..++..
T Consensus 211 ~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~ 262 (330)
T cd05601 211 EGTSAKTY-----------------NNIMNFQRFLKFPEDPKVSSDFLDLIQSLLC-GQKERLGYEGLCC 262 (330)
T ss_pred CCCHHHHH-----------------HHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-ChhhCCCHHHHhC
Confidence 54332110 0000000000000111233458899999997 9999999876543
|
Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor |
| >cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.1e-12 Score=123.17 Aligned_cols=115 Identities=17% Similarity=0.168 Sum_probs=64.2
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHh--hhhh---hccccCC
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELI--DYIR---CVSTKAS 105 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~--~~~~---~~~~~~~ 105 (552)
.....||+.|||||++ .+ ...++.++|||||||+||||++|+ ||.+... ..+. .+-....
T Consensus 160 ~~~~~~~~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~ 225 (303)
T cd07869 160 YSNEVVTLWYRPPDVL------LG--------STEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPN 225 (303)
T ss_pred CCCCcccCCCCChHHH------cC--------CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhCCCC
Confidence 3556799999999998 22 234567899999999999999999 9964211 1110 0001111
Q ss_pred CchhhhhhhhHHHHHH-----HHHHHhhh--hcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 106 DDNIACLGMYMAWMEK-----VTYLLENK--FGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 106 ~~~~~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
...|............ .+...... .......+.+++.+||+.+|.+||++.++..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~ 287 (303)
T cd07869 226 EDTWPGVHSLPHFKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALS 287 (303)
T ss_pred hhhccchhhccccccccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHhc
Confidence 1111100000000000 00000000 0012235789999999999999999877654
|
Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an |
| >cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.8e-12 Score=120.47 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=66.1
Q ss_pred hccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhh
Q 008820 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
...+++.|||||++ . ....+.++|+|||||++|||+| |+ ||.......+.
T Consensus 162 ~~~~~~~y~~Pe~~------~---------~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~------------- 213 (260)
T cd05069 162 GAKFPIKWTAPEAA------L---------YGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNREVL------------- 213 (260)
T ss_pred CCccchhhCCHHHh------c---------cCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHH-------------
Confidence 44578899999998 2 2556789999999999999999 88 99654322110
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHh
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~ 164 (552)
...... . ...........+.+++.+||..+|.+||++.++.+.+..
T Consensus 214 ----~~~~~~-~--~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~ 259 (260)
T cd05069 214 ----EQVERG-Y--RMPCPQGCPESLHELMKLCWKKDPDERPTFEYIQSFLED 259 (260)
T ss_pred ----HHHHcC-C--CCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence 000000 0 000111233458999999999999999999988887653
|
Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an |
| >cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-12 Score=129.12 Aligned_cols=89 Identities=12% Similarity=0.076 Sum_probs=58.1
Q ss_pred hccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhhh
Q 008820 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIACL 112 (552)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~ 112 (552)
..+|||.|||||++ ....++.++|||||||+||||++|+ ||...+.....
T Consensus 198 ~~~gt~~y~aPE~~---------------~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~~~~~~~-------------- 248 (364)
T cd05599 198 STVGTPDYIAPEVF---------------LQTGYNKECDWWSLGVIMYEMLVGYPPFCSDNPQETY-------------- 248 (364)
T ss_pred ccccCccccCHHHH---------------cCCCCCCeeeeecchhHHHHhhcCCCCCCCCCHHHHH--------------
Confidence 46799999999998 2355678999999999999999999 99764432110
Q ss_pred hhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcch
Q 008820 113 GMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (552)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~ 155 (552)
............+.......++.+++.+||. +|.+|++.
T Consensus 249 ---~~i~~~~~~~~~~~~~~~s~~~~~li~~ll~-~p~~R~~~ 287 (364)
T cd05599 249 ---RKIINWKETLQFPDEVPLSPEAKDLIKRLCC-EAERRLGN 287 (364)
T ss_pred ---HHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-CHhhcCCC
Confidence 0000000000000011123458899999996 99999983
|
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica |
| >cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3 | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.5e-12 Score=119.76 Aligned_cols=94 Identities=17% Similarity=0.376 Sum_probs=63.9
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC--CchHHHhhhhhhccccCCCchhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE--QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~--pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
..+.||+.|||||++ .+ ...++.++|||||||++|||++|. ||........
T Consensus 162 ~~~~~~~~y~aPE~~------~~--------~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~~~------------- 214 (258)
T cd05078 162 EILLERIPWVPPECI------EN--------PQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQKK------------- 214 (258)
T ss_pred hhccccCCccCchhc------cC--------CCCCCchhhHHHHHHHHHHHHcCCCCChhhccHHHH-------------
Confidence 346899999999998 21 123568999999999999999995 6544222100
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l 162 (552)
........ ........++.+++.+||+.+|++||++.++.+.+
T Consensus 215 -----~~~~~~~~----~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l 257 (258)
T cd05078 215 -----LQFYEDRH----QLPAPKWTELANLINQCMDYEPDFRPSFRAIIRDL 257 (258)
T ss_pred -----HHHHHccc----cCCCCCcHHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence 00111111 11112334589999999999999999999887754
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-08 Score=93.52 Aligned_cols=276 Identities=16% Similarity=0.154 Sum_probs=167.0
Q ss_pred ceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeC-CCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcc
Q 008820 254 CVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKG-HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP 330 (552)
Q Consensus 254 ~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 330 (552)
.+..++|+ -..++++..|-+|++||-+. ++...++. ....|++++|-|.+...++.|+. +.|.+|..+.......
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANR 177 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccccc
Confidence 45667777 45578888999999999666 55555543 45789999999999888888876 5689998764322111
Q ss_pred ---------ccccccCCCceeeeEEEEeeCCCEEEEeeC-CCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEE
Q 008820 331 ---------LKKWNEEKDWRYSGIHALTTSGRYLYTGSG-DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSG 398 (552)
Q Consensus 331 ---------~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~ 398 (552)
.+.+. +.+........+.+||..+++++. |..|.+||..++..+.......+.++-+.|+ +++|+++
T Consensus 178 ~~~~~s~~~~qvl~-~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQ-DPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred ccccccccchhhee-CCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence 11111 111133344567778888888775 6789999999988776554456678899999 3499999
Q ss_pred eCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC---c--------------ceeee-
Q 008820 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND---K--------------FMKSM- 460 (552)
Q Consensus 399 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~---~--------------~~~~~- 460 (552)
.-|+..++|+............. .+.+.+ .+|+|+|++|+..+. |.-++|.+. + ++..+
T Consensus 257 t~davfrlw~e~q~wt~erw~lg-sgrvqt-acWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 257 TCDAVFRLWQENQSWTKERWILG-SGRVQT-ACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred cccceeeeehhcccceecceecc-CCceee-eeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 99999999965443322222222 234444 589999987765543 233444311 0 00000
Q ss_pred -----ec---ccceEEEEEe--cCCEEEEEeCCCe--------EEEEecCCCeeeeeeccCCCcccCcceEEEEEe----
Q 008820 461 -----QT---HKGSVFAVFL--EGKWLFTGGWDKT--------VSVQELAGDEFEEDVIPTGAIPCGSVITALLYW---- 518 (552)
Q Consensus 461 -----~~---h~~~v~~v~~--~~~~l~sgs~dg~--------i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~---- 518 (552)
.+ -.+...+++| .|.+|++.-..+. |.+||.+....... ...+...... -..++|+
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel-s~cg~i~ge~-P~~IsF~pl~n 411 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL-SYCGMIGGEY-PAYISFGPLKN 411 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE-EecccccCCC-CceEEeeeccc
Confidence 01 1234455655 7889988765443 56677764322221 1111111111 2233444
Q ss_pred CCe-EEEEeCCCeEEEEEec
Q 008820 519 QGK-LFVGCADRTVKIALCN 537 (552)
Q Consensus 519 ~~~-l~s~s~Dg~v~iw~~~ 537 (552)
.+. |..+=+.|.+.-|.+.
T Consensus 412 ~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 412 EGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CCcEEEEEeccCceEeeeeE
Confidence 233 4445567888777765
|
|
| >cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.4e-12 Score=120.98 Aligned_cols=130 Identities=16% Similarity=0.160 Sum_probs=72.7
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.+|++ |+++.+..... .....||+.|+|||++. + ....+.++|||||||+||||++|. ||
T Consensus 137 ~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~------~--------~~~~~~~~Di~slGv~l~el~~~~~p~ 199 (282)
T cd07831 137 ILKLADFGSCRGIYSKPP---YTEYISTRWYRAPECLL------T--------DGYYGPKMDIWAVGCVFFEILSLFPLF 199 (282)
T ss_pred CeEEEecccccccccCCC---cCCCCCCcccCChhHhh------c--------CCCCCcchhHHHHHHHHHHHHcCCcCC
Confidence 45555 45555543322 34567999999999872 1 234568999999999999999999 99
Q ss_pred hHHHhhhh----hhccccCCCchhhhhhhhH---H--HHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYI----RCVSTKASDDNIACLGMYM---A--WMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
...+.... ...... .+..|....... . ..................++.+++.+||+.+|++||++.++.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~ 278 (282)
T cd07831 200 PGTNELDQIAKIHDVLGT-PDAEVLKKFRKSRHMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALR 278 (282)
T ss_pred CCCCHHHHHHHHHHHcCC-CCHHHHHhhcccccccccCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhh
Confidence 65432211 100010 000000000000 0 0000000000011123456999999999999999999887654
|
Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. |
| >cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.9e-12 Score=121.76 Aligned_cols=114 Identities=17% Similarity=0.317 Sum_probs=71.6
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |++..+... ..+...||+.|+|||++ . ...++.++|+|||||++|+|++|+ ||.
T Consensus 134 ~~l~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~------~---------~~~~~~~~DvwslG~~l~~l~~g~~pf~ 194 (279)
T cd06619 134 VKLCDFGVSTQLVNS----IAKTYVGTNAYMAPERI------S---------GEQYGIHSDVWSLGISFMELALGRFPYP 194 (279)
T ss_pred EEEeeCCcceecccc----cccCCCCChhhcCceee------c---------CCCCCCcchHHHHHHHHHHHHhCCCCch
Confidence 4455 445444333 24567899999999998 2 245678999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-Hhh-hhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LEN-KFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..... ..... ........... +.. ......+++.+++.+||+.+|.+||++.++.+
T Consensus 195 ~~~~~-----~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~eil~ 252 (279)
T cd06619 195 QIQKN-----QGSLM---------PLQLLQCIVDEDPPVLPVGQFSEKFVHFITQCMRKQPKERPAPENLMD 252 (279)
T ss_pred hhccc-----ccccc---------hHHHHHHHhccCCCCCCCCcCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence 53221 00000 00111100000 000 01123446899999999999999999887655
|
Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p |
| >cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4 | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-12 Score=124.76 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=64.3
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHh--hhhhhccccCCCchh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELI--DYIRCVSTKASDDNI 109 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~--~~~~~~~~~~~~~~~ 109 (552)
....||+.|+|||++ .+ .....++.++|||||||++|||++|+ ||..... ..+..+....
T Consensus 165 ~~~~~~~~y~aPE~~------~~------~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~----- 227 (288)
T cd06616 165 TRDAGCRPYMAPERI------DP------SARDGYDVRSDVWSLGITLYEVATGKFPYPKWNSVFDQLTQVVKGD----- 227 (288)
T ss_pred ccccCccCccCHHHh------cc------ccccCCcchhhhhHHHHHHHHHHhCCCCchhcchHHHHHhhhcCCC-----
Confidence 445799999999998 22 00135678999999999999999999 9965321 1111000000
Q ss_pred hhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 110 ACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+..+.........++.+++.+||+.+|++||+..++..
T Consensus 228 ------------~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~ 266 (288)
T cd06616 228 ------------PPILSNSEEREFSPSFVNFINLCLIKDESKRPKYKELLE 266 (288)
T ss_pred ------------CCcCCCcCCCccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 000011111123345889999999999999999887655
|
Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates |
| >cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase | Back alignment and domain information |
|---|
Probab=99.24 E-value=4e-12 Score=125.54 Aligned_cols=128 Identities=15% Similarity=0.216 Sum_probs=71.8
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++..... .....||+.|||||++ .+ ...++.++|||||||+||+|++|+ ||.
T Consensus 157 ~kl~Dfg~~~~~~~~-----~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~el~~g~~pf~ 217 (343)
T cd07878 157 LRILDFGLARQADDE-----MTGYVATRWYRAPEIM------LN--------WMHYNQTVDIWSVGCIMAELLKGKALFP 217 (343)
T ss_pred EEEcCCccceecCCC-----cCCccccccccCchHh------cC--------CccCCchhhhHhHHHHHHHHHHCCCCCC
Confidence 3444 455554433 4567899999999998 22 134668999999999999999999 996
Q ss_pred HHHhh----hhhhccccCCCchhh-hh-hhhHHHHHHHHHHH----hhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELID----YIRCVSTKASDDNIA-CL-GMYMAWMEKVTYLL----ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~----~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..... .+....+...+..+. .. ..........+..+ ........+.+.+++.+||..+|.+||++.++..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~ 297 (343)
T cd07878 218 GNDYIDQLKRIMEVVGTPSPEVLKKISSEHARKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALA 297 (343)
T ss_pred CCCHHHHHHHHHHHhCCCCHHHHHhcchhhHHHHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 53221 111000110000000 00 00000000000000 0011122334789999999999999999887665
|
Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is |
| >cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1 | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-12 Score=129.40 Aligned_cols=46 Identities=26% Similarity=0.491 Sum_probs=39.3
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHH
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKEL 93 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~ 93 (552)
..+.||+.|||||++ . ...++.++|||||||+||||++|+ ||...+
T Consensus 206 ~~~~gt~~Y~aPE~~------~---------~~~~~~~~DiwSlGvil~elltG~~Pf~~~~ 252 (382)
T cd05625 206 HSLVGTPNYIAPEVL------L---------RTGYTQLCDWWSVGVILYEMLVGQPPFLAQT 252 (382)
T ss_pred cccccCcccCCHHHh------c---------CCCCCCeeeEEechHHHHHHHhCCCCCCCCC
Confidence 457899999999999 2 245678999999999999999999 996543
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an |
| >cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk | Back alignment and domain information |
|---|
Probab=99.24 E-value=6e-12 Score=119.16 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=71.9
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELID 95 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~ 95 (552)
|++..+.+.... .....+++.|+|||++ ....++.++|||||||++|+|++ |+ ||......
T Consensus 149 g~~~~~~~~~~~--~~~~~~~~~~~~PE~~---------------~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~ 211 (261)
T cd05148 149 GLARLIKEDVYL--SSDKKIPYKWTAPEAA---------------SHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNH 211 (261)
T ss_pred cchhhcCCcccc--ccCCCCceEecCHHHH---------------ccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCHH
Confidence 445444433221 3355678899999998 22456689999999999999999 88 99654322
Q ss_pred hhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHh
Q 008820 96 YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (552)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~ 164 (552)
.+. ..... ....+.......++.+++.+|++.+|.+||++.++.+.+..
T Consensus 212 ~~~-----------------~~~~~---~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~ 260 (261)
T cd05148 212 EVY-----------------DQITA---GYRMPCPAKCPQEIYKIMLECWAAEPEDRPSFKALREELDN 260 (261)
T ss_pred HHH-----------------HHHHh---CCcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhc
Confidence 110 00000 00001112234458899999999999999999998887653
|
Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom |
| >cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.5e-12 Score=119.77 Aligned_cols=95 Identities=15% Similarity=0.154 Sum_probs=66.0
Q ss_pred ccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhhh
Q 008820 35 FLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIACL 112 (552)
Q Consensus 35 ~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~~ 112 (552)
..+++.|||||++ . ...+++++|||||||++|+|++ |+ ||.......+.
T Consensus 168 ~~~~~~y~~Pe~~------~---------~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~~~~-------------- 218 (266)
T cd05033 168 GKIPIRWTAPEAI------A---------YRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQDVI-------------- 218 (266)
T ss_pred CCCCccccChhhh------c---------cCCCccccchHHHHHHHHHHHccCCCCCCCCCHHHHH--------------
Confidence 3457889999998 2 2456789999999999999998 99 99543322110
Q ss_pred hhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 113 GMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 113 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
..+... ..+.....+..+.+++.+|++.+|++||++.++.+.+.++
T Consensus 219 -------~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~ 265 (266)
T cd05033 219 -------KAVEDGYRLPPPMDCPSALYQLMLDCWQKDRNERPTFSQIVSTLDKM 265 (266)
T ss_pred -------HHHHcCCCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 000000 0001112344589999999999999999999998887764
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment |
| >KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-12 Score=114.56 Aligned_cols=117 Identities=15% Similarity=0.186 Sum_probs=78.5
Q ss_pred hhhhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC
Q 008820 10 TKSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE 87 (552)
Q Consensus 10 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~ 87 (552)
|+-+||.. |+|..+.+--.- .-.+.|||-|||||+++|.. ++.++||||||++..||.-|+
T Consensus 164 T~G~AKLADFGVAGQLTDTMAK--RNTVIGTPFWMAPEVI~EIG---------------Y~~~ADIWSLGITaIEMAEG~ 226 (502)
T KOG0574|consen 164 TDGIAKLADFGVAGQLTDTMAK--RNTVIGTPFWMAPEVIEEIG---------------YDTKADIWSLGITAIEMAEGR 226 (502)
T ss_pred ccchhhhhhccccchhhhhHHh--hCccccCcccccHHHHHHhc---------------cchhhhHhhhcchhhhhhcCC
Confidence 55667766 677666654332 55789999999999996643 347999999999999999999
Q ss_pred -CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
|+..-...+-++ ++.-.| +...+ .+..+..++.+++++||-+.|++|-++.++.+.
T Consensus 227 PPYsDIHPMRAIF-MIPT~P--------PPTF~---------KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~~H 283 (502)
T KOG0574|consen 227 PPYSDIHPMRAIF-MIPTKP--------PPTFK---------KPEEWSSEFNDFIRSCLIKKPEERKTALRLCEH 283 (502)
T ss_pred CCcccccccceeE-eccCCC--------CCCCC---------ChHhhhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Confidence 886544332221 111111 00000 011133458899999999999999887766653
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-09 Score=108.96 Aligned_cols=212 Identities=15% Similarity=0.164 Sum_probs=131.7
Q ss_pred CcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcC--CCcEEEEeCCCCCCCccccccccCCCceeeeEEEEe
Q 008820 272 KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDS--GGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALT 349 (552)
Q Consensus 272 g~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (552)
..|.+||... ...+.+..+...+.+.+|+|++..++++... +..|.+||+.++... .+...... .....++
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~-----~~~~~~S 256 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGI-----NGAPSFS 256 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCC-----ccCceEC
Confidence 4689999854 4455566677889999999988866554433 346999999765432 22211111 1234789
Q ss_pred eCCCEEE-EeeCCC--cEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEe-CCCc--EEEEECCCCceeEEEecC
Q 008820 350 TSGRYLY-TGSGDR--TIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGS-RDGT--IRLWSLSDHSLLTVLEED 421 (552)
Q Consensus 350 ~~~~~l~-sgs~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~ 421 (552)
|+|+.++ +.+.+| .|++||+.+++.. .+..+.......+|+ ++ .++.++ .+|. |+++|+.+++.... ...
T Consensus 257 pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~ 334 (433)
T PRK04922 257 PDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TFQ 334 (433)
T ss_pred CCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ecC
Confidence 9998664 455555 5999999887754 455555556678898 44 666555 4444 77777777664332 222
Q ss_pred CCCceEEEEEEcCCCCEEEEEECCC---cEEEEeCCc-ceeeeecc-cceEEEEEecCCEEEEEeCC---CeEEEEecCC
Q 008820 422 SSGAVSSVLSLTAVQHTLVVSHESG---SIKVWRNDK-FMKSMQTH-KGSVFAVFLEGKWLFTGGWD---KTVSVQELAG 493 (552)
Q Consensus 422 ~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd~~~-~~~~~~~h-~~~v~~v~~~~~~l~sgs~d---g~i~iwd~~~ 493 (552)
. . .....+|+|+|+.++..+.++ .|.+||+.. ....+... ...-.++++||++++..+.+ +.|.++++.+
T Consensus 335 g-~-~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 335 G-N-YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred C-C-CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 1 1 122268999999998765443 588999643 22333221 11112455699988877653 4578888865
Q ss_pred C
Q 008820 494 D 494 (552)
Q Consensus 494 ~ 494 (552)
.
T Consensus 413 ~ 413 (433)
T PRK04922 413 R 413 (433)
T ss_pred C
Confidence 4
|
|
| >cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-12 Score=121.14 Aligned_cols=94 Identities=15% Similarity=0.198 Sum_probs=63.6
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
....|++.|+|||++ .+ ...+.++|||||||++|||++|+ ||.........
T Consensus 165 ~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~------------- 216 (263)
T cd06625 165 KSVTGTPYWMSPEVI------SG---------EGYGRKADVWSVGCTVVEMLTEKPPWAEFEAMAAI------------- 216 (263)
T ss_pred cCCCcCccccCccee------cc---------CCCCchhhhHHHHHHHHHHHhCCCCccccchHHHH-------------
Confidence 456799999999998 22 34678999999999999999999 99653222000
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.... . ..............+.+++.+||.++|.+||+..++..
T Consensus 217 ---~~~~-~--~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~ 259 (263)
T cd06625 217 ---FKIA-T--QPTNPQLPSHVSPDARNFLRRTFVENAKKRPSAEELLR 259 (263)
T ss_pred ---HHHh-c--cCCCCCCCccCCHHHHHHHHHHhhcCcccCCCHHHHhh
Confidence 0000 0 00000111123445889999999999999999877654
|
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t |
| >cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.8e-12 Score=118.75 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=72.1
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELID 95 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~ 95 (552)
|++..+...+.........+++.|+|||++ . ....+.++|||||||++|||++ |+ ||......
T Consensus 150 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~ 214 (262)
T cd00192 150 GLSRDVYDDDYYRKKTGGKLPIRWMAPESL------K---------DGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNE 214 (262)
T ss_pred ccccccccccccccccCCCcCccccCHHHh------c---------cCCcchhhccHHHHHHHHHHHhcCCCCCCCCCHH
Confidence 444444443322234567789999999998 2 2456789999999999999999 58 99664332
Q ss_pred hhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHH
Q 008820 96 YIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (552)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l 162 (552)
.+. ...... ...........+.+++.+||..+|.+||++.++.+.+
T Consensus 215 ~~~---------------------~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l 261 (262)
T cd00192 215 EVL---------------------EYLRKGYRLPKPEYCPDELYELMLSCWQLDPEDRPTFSELVERL 261 (262)
T ss_pred HHH---------------------HHHHcCCCCCCCccCChHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence 110 111000 0011112244589999999999999999999887754
|
Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan |
| >cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2 | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.5e-12 Score=127.70 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=60.0
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
..++||+.|||||++ . ...++.++|||||||+||||+||+ ||...+.....
T Consensus 206 ~~~~gt~~Y~aPE~~------~---------~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~------------- 257 (381)
T cd05626 206 HSLVGTPNYIAPEVL------L---------RKGYTQLCDWWSVGVILFEMLVGQPPFLAPTPTETQ------------- 257 (381)
T ss_pred ccccCCccccCHHHH------c---------CCCCCCccceeehhhHHHHHHhCCCCCcCCCHHHHH-------------
Confidence 457899999999999 2 245678999999999999999999 99654322100
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcc--cCCCCCcchhhHHH
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLN--FDPGCRPLLTNVWK 160 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~~p~~R~~~~~~~~ 160 (552)
............+......+++.+++.+++. .+|..|++..++..
T Consensus 258 ----~~i~~~~~~~~~~~~~~~s~~~~dli~~ll~~~~~~~~R~~~~~~l~ 304 (381)
T cd05626 258 ----LKVINWENTLHIPPQVKLSPEAVDLITKLCCSAEERLGRNGADDIKA 304 (381)
T ss_pred ----HHHHccccccCCCCCCCCCHHHHHHHHHHccCcccccCCCCHHHHhc
Confidence 0000000000001111234458889988554 45555888777655
|
Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po |
| >cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10 | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.6e-12 Score=119.69 Aligned_cols=96 Identities=15% Similarity=0.210 Sum_probs=65.7
Q ss_pred ccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhhh
Q 008820 35 FLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIACL 112 (552)
Q Consensus 35 ~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~~ 112 (552)
..+++.|||||++ . ...+++++|||||||++|||++ |+ ||.......+.
T Consensus 168 ~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~~~~~-------------- 218 (266)
T cd05064 168 GKSPVLWAAPEAI------Q---------YHHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQDVI-------------- 218 (266)
T ss_pred CCCceeecCHHHH------h---------hCCccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHH--------------
Confidence 4567899999998 2 2566789999999999999775 99 99653322111
Q ss_pred hhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 113 GMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
...... . ..+.....+..+.+++.+|++.+|.+||++.++.+.+.++
T Consensus 219 ---~~~~~~-~--~~~~~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~~ 265 (266)
T cd05064 219 ---KAVEDG-F--RLPAPRNCPNLLHQLMLDCWQKERGERPRFSQIHSILSKM 265 (266)
T ss_pred ---HHHHCC-C--CCCCCCCCCHHHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence 000000 0 0001112334588999999999999999999998877654
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.6e-12 Score=134.78 Aligned_cols=100 Identities=14% Similarity=0.228 Sum_probs=67.3
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
..+.||+.|||||++ .| ..++.++|||||||+||||+||+ ||.......+.
T Consensus 189 g~~vGT~~YmAPE~l------~g---------~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~ki~------------- 240 (932)
T PRK13184 189 GKIVGTPDYMAPERL------LG---------VPASESTDIYALGVILYQMLTLSFPYRRKKGRKIS------------- 240 (932)
T ss_pred CCCCCCCCCCCHHHh------cC---------CCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhhhh-------------
Confidence 346899999999998 32 45678999999999999999999 99663322110
Q ss_pred hhhhHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcc-hhhHHHHHHhhh
Q 008820 112 LGMYMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPL-LTNVWKCIRELI 166 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~-~~~~~~~l~~~~ 166 (552)
......... ..........+.+++.+||+.+|.+||+ +.++.+.+...+
T Consensus 241 ------~~~~i~~P~~~~p~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~Le~~l 291 (932)
T PRK13184 241 ------YRDVILSPIEVAPYREIPPFLSQIAMKALAVDPAERYSSVQELKQDLEPHL 291 (932)
T ss_pred ------hhhhccChhhccccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 000000000 0011123345889999999999999977 556666666554
|
|
| >PHA03211 serine/threonine kinase US3; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.6e-12 Score=127.26 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=45.2
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
+|+. |+++.+...........+.||+.|||||++ .| ..++.++|||||||+||||++|. |+
T Consensus 299 vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~APE~~------~~---------~~~~~~sDvwSlGviL~El~~g~~~l 362 (461)
T PHA03211 299 ICLGDFGAACFARGSWSTPFHYGIAGTVDTNAPEVL------AG---------DPYTPSVDIWSAGLVIFEAAVHTASL 362 (461)
T ss_pred EEEcccCCceecccccccccccccCCCcCCcCHHHH------cC---------CCCCchHHHHHHHHHHHHHHHcCCCc
Confidence 4555 556555443333334567899999999999 33 55778999999999999999988 55
|
|
| >cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.9e-12 Score=118.67 Aligned_cols=96 Identities=14% Similarity=0.131 Sum_probs=66.5
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
....+++.|+|||++ . ...++.++|||||||++|||++ |+ ||...+...+.
T Consensus 161 ~~~~~~~~y~~pe~~------~---------~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~------------ 213 (260)
T cd05067 161 EGAKFPIKWTAPEAI------N---------YGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVI------------ 213 (260)
T ss_pred cCCcccccccCHHHh------c---------cCCcCcccchHHHHHHHHHHHhCCCCCCCCCChHHHH------------
Confidence 345678899999998 2 2456789999999999999999 99 99654433110
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~ 163 (552)
..... .. ..+.......++.+++.+|+..+|++||+..++...+.
T Consensus 214 -----~~~~~-~~--~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~ 258 (260)
T cd05067 214 -----QNLER-GY--RMPRPDNCPEELYELMRLCWKEKPEERPTFEYLRSVLE 258 (260)
T ss_pred -----HHHHc-CC--CCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHhh
Confidence 00000 00 00011112345999999999999999999998887765
|
Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr |
| >cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2 | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.4e-12 Score=126.87 Aligned_cols=69 Identities=20% Similarity=0.318 Sum_probs=48.2
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
+|+. |+|+.+...... -.....||+.|||||++.... ..+.++.++|+|||||+||||++|+ ||.
T Consensus 181 ~kL~DFG~a~~~~~~~~~-~~~~~~gt~~Y~aPE~~~~~~-----------~~~~~~~~~DiwSlG~ilyell~G~~Pf~ 248 (370)
T cd05621 181 LKLADFGTCMKMDETGMV-RCDTAVGTPDYISPEVLKSQG-----------GDGYYGRECDWWSVGVFLFEMLVGDTPFY 248 (370)
T ss_pred EEEEecccceecccCCce-ecccCCCCcccCCHHHHhccC-----------CCCCCCcccCEEeehHHHHHHHhCCCCCC
Confidence 5555 566655433211 134678999999999993110 1234678999999999999999999 997
Q ss_pred HHHh
Q 008820 91 KELI 94 (552)
Q Consensus 91 ~~~~ 94 (552)
..+.
T Consensus 249 ~~~~ 252 (370)
T cd05621 249 ADSL 252 (370)
T ss_pred CCCH
Confidence 6543
|
Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found |
| >cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2 | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-12 Score=127.57 Aligned_cols=92 Identities=16% Similarity=0.124 Sum_probs=59.7
Q ss_pred hccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhhh
Q 008820 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIACL 112 (552)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~ 112 (552)
..+||+.|||||++ . ...++.++|||||||+||||+||+ ||...+...+.
T Consensus 195 ~~~gt~~Y~APE~~------~---------~~~~~~~~DiwSlGvilyel~tG~~Pf~~~~~~~~~-------------- 245 (360)
T cd05627 195 STVGTPDYIAPEVF------M---------QTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETY-------------- 245 (360)
T ss_pred ccCCCccccCHHHH------c---------CCCCCCcceeccccceeeecccCCCCCCCCCHHHHH--------------
Confidence 56899999999998 2 245678999999999999999999 99664433110
Q ss_pred hhhHHHHH--HHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 113 GMYMAWME--KVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 113 ~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..+.. .....+. ......++.+++.+++ .+|.+|+....+.+
T Consensus 246 ---~~i~~~~~~~~~p~--~~~~s~~~~~li~~l~-~~p~~R~~~~~~~e 289 (360)
T cd05627 246 ---RKVMNWKETLVFPP--EVPISEKAKDLILRFC-TDSENRIGSNGVEE 289 (360)
T ss_pred ---HHHHcCCCceecCC--CCCCCHHHHHHHHHhc-cChhhcCCCCCHHH
Confidence 00000 0000010 0112345888888876 59999987544333
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul |
| >cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10 | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.2e-12 Score=119.68 Aligned_cols=112 Identities=19% Similarity=0.259 Sum_probs=74.2
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
+|+. |+++...... ......|++.|+|||++ . ...++.++|+|||||++|+|++|+ ||.
T Consensus 153 ~~l~dfg~~~~~~~~~---~~~~~~~~~~~~~Pe~~------~---------~~~~~~~~Dv~slG~ll~~l~~g~~p~~ 214 (269)
T cd08528 153 VTITDFGLAKQKQPES---KLTSVVGTILYSCPEIV------K---------NEPYGEKADVWAFGCILYQMCTLQPPFY 214 (269)
T ss_pred EEEecccceeeccccc---ccccccCcccCcChhhh------c---------CCCCchHHHHHHHHHHHHHHHhCCCccc
Confidence 4555 3444443332 24677899999999999 2 245678999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l 162 (552)
......+. ......... + .........+.+++.+|++.+|++||++.++...+
T Consensus 215 ~~~~~~~~-----------------~~~~~~~~~-~-~~~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~ 267 (269)
T cd08528 215 STNMLSLA-----------------TKIVEAVYE-P-LPEGMYSEDVTDVITSCLTPDAEARPDIIQVSAMI 267 (269)
T ss_pred ccCHHHHH-----------------HHHhhccCC-c-CCcccCCHHHHHHHHHHCCCCCccCCCHHHHHHHh
Confidence 54333111 000000000 0 00012344699999999999999999999888765
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. |
| >cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.8e-12 Score=120.78 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=63.8
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....||+.|||||++..... ....+++++|||||||+||+|++|+ ||.........
T Consensus 170 ~~~~~~~~~y~aPE~~~~~~~----------~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~------------ 227 (275)
T cd06608 170 RNTFIGTPYWMAPEVIACDEQ----------PDASYDARSDVWSLGITAIELADGKPPLCDMHPMRAL------------ 227 (275)
T ss_pred hcCccccccccCHhHhccccc----------ccCCccccccHHHhHHHHHHHHhCCCCccccchHHHH------------
Confidence 345679999999999832111 1234568999999999999999999 99643221000
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+......+. ..........+.+++.+||..+|++||++.++..
T Consensus 228 ----~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~ 271 (275)
T cd06608 228 ----FKIPRNPPPT--LKSPENWSKKFNDFISECLIKNYEQRPFMEELLE 271 (275)
T ss_pred ----HHhhccCCCC--CCchhhcCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence 0000000000 0000012235889999999999999999887654
|
Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I |
| >cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-11 Score=119.92 Aligned_cols=103 Identities=12% Similarity=0.093 Sum_probs=65.8
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh--CC-CchHHHhhhhhhccccCCCchh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI--GE-QFTKELIDYIRCVSTKASDDNI 109 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt--g~-pf~~~~~~~~~~~~~~~~~~~~ 109 (552)
....+++.|||||++ ....++.++|+|||||++|+|++ |. ||...+...+..
T Consensus 189 ~~~~~~~~y~aPE~~---------------~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~~~~~---------- 243 (295)
T cd05097 189 GRAVLPIRWMAWESI---------------LLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDEQVIE---------- 243 (295)
T ss_pred CcCcCceeecChhhh---------------ccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccChHHHHH----------
Confidence 445668899999998 23556789999999999999988 56 886533321110
Q ss_pred hhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHH
Q 008820 110 ACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (552)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~ 163 (552)
...+.................+..+.+++.+|++.+|++||++.++.+.+.
T Consensus 244 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~ 294 (295)
T cd05097 244 ---NTGEFFRNQGRQIYLSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHHFLR 294 (295)
T ss_pred ---HHHHhhhhccccccCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence 000000000000000111123346999999999999999999999877654
|
Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including |
| >cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.7e-12 Score=120.48 Aligned_cols=111 Identities=19% Similarity=0.315 Sum_probs=70.8
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|.+ |+++.+...... ...+.|++.|+|||++ .+ ..++.++|+|||||++|||+||+ ||.
T Consensus 140 ~~l~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~------~~---------~~~~~~~Dv~slG~il~el~tg~~p~~ 202 (277)
T cd06642 140 VKLADFGVAGQLTDTQIK--RNTFVGTPFWMAPEVI------KQ---------SAYDFKADIWSLGITAIELAKGEPPNS 202 (277)
T ss_pred EEEccccccccccCcchh--hhcccCcccccCHHHh------Cc---------CCCchhhhHHHHHHHHHHHHhCCCCCc
Confidence 4444 444444433221 3346799999999998 22 44568999999999999999999 986
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
......+. ...... .+.........++.+++.+|++.+|++||++.++...
T Consensus 203 ~~~~~~~~-----------------~~~~~~---~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~ 253 (277)
T cd06642 203 DLHPMRVL-----------------FLIPKN---SPPTLEGQYSKPFKEFVEACLNKDPRFRPTAKELLKH 253 (277)
T ss_pred ccchhhHH-----------------hhhhcC---CCCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHHh
Confidence 43222110 000000 0000001123358899999999999999999887763
|
Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 |
| >cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7 | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.3e-12 Score=118.29 Aligned_cols=99 Identities=20% Similarity=0.412 Sum_probs=67.5
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
....|++.|+|||++ . ...++.++|+|||||++|+|++|+ ||...... +.
T Consensus 164 ~~~~~~~~y~apE~~------~---------~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-~~------------- 214 (267)
T cd08224 164 HSLVGTPYYMSPERI------H---------ENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN-LY------------- 214 (267)
T ss_pred ceecCCccccCHHHh------c---------cCCCCchhcHHHHHHHHHHHHHCCCCcccCCcc-HH-------------
Confidence 456799999999998 2 244668999999999999999999 99653321 00
Q ss_pred hhhhHHHHHHHHHH--HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 112 LGMYMAWMEKVTYL--LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 112 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
...+..... +..........+.+++.+|+..+|++||+..++.+.+.++
T Consensus 215 -----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~ 265 (267)
T cd08224 215 -----SLCKKIEKCDYPPLPADHYSEELRDLVSRCINPDPEKRPDISYVLQVAKEM 265 (267)
T ss_pred -----HHHhhhhcCCCCCCChhhcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHHh
Confidence 000000000 0000001223588999999999999999999988877654
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.4e-09 Score=97.23 Aligned_cols=224 Identities=17% Similarity=0.218 Sum_probs=150.2
Q ss_pred ccccceeeecCcceEEEeeCCCeEEEEEee-----------cCccceEEEEEc--CCEEEEEeCCCcEEEEeCC----CC
Q 008820 220 ADIDQARAAGGVKDLVNGLSKGNVKFKDLQ-----------GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK----DF 282 (552)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~----~~ 282 (552)
+.++.+...+....+++.+.+..+++|.-. .-..+++++.+. ...|+.|-..|++.-+.+. ..
T Consensus 25 d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm 104 (404)
T KOG1409|consen 25 DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKM 104 (404)
T ss_pred hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhc
Confidence 345555556667778888888888887532 224578888888 7788889899999888653 44
Q ss_pred eEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCC
Q 008820 283 SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR 362 (552)
Q Consensus 283 ~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg 362 (552)
...+....|...|..+.|+-..+ .+++.+.|..+.---.+.+.......... ...+...+-.+.+.|...|
T Consensus 105 ~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~--------~~t~~~~d~~~~fvGd~~g 175 (404)
T KOG1409|consen 105 TFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFET--------PASALQFDALYAFVGDHSG 175 (404)
T ss_pred chhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEeec--------cCCCCceeeEEEEeccccc
Confidence 55666778999999999976444 66788887766433333222111100000 0001111111556676777
Q ss_pred cEEEEEC--CCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCcee-EEEecCCCCceEEEEEEcCCCC
Q 008820 363 TIKAWSL--LDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLL-TVLEEDSSGAVSSVLSLTAVQH 437 (552)
Q Consensus 363 ~i~iwd~--~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~ 437 (552)
.|.+..+ ..-.++.++.+|.+.+.+++|. +..+++|..|..+.+||+--.+-. ..+.++ ...+.. ++..+.-+
T Consensus 176 qvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh-~~kV~~-l~~~~~t~ 253 (404)
T KOG1409|consen 176 QITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGH-NDKVQA-LSYAQHTR 253 (404)
T ss_pred ceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccc-hhhhhh-hhhhhhhe
Confidence 7766554 4557788999999999999999 559999999999999999765543 333333 333333 45556677
Q ss_pred EEEEEECCCcEEEEeCC
Q 008820 438 TLVVSHESGSIKVWRND 454 (552)
Q Consensus 438 ~l~~g~~dg~i~iwd~~ 454 (552)
.+++++.||.|.+||..
T Consensus 254 ~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 254 QLISCGEDGGIVVWNMN 270 (404)
T ss_pred eeeeccCCCeEEEEecc
Confidence 89999999999999854
|
|
| >cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.1e-12 Score=118.38 Aligned_cols=94 Identities=14% Similarity=0.164 Sum_probs=65.6
Q ss_pred ccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhhhhh
Q 008820 37 ESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIACLGM 114 (552)
Q Consensus 37 g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (552)
|+..|+|||.+ ....++.++|||||||++|+|++ |+ ||.......+.
T Consensus 160 ~~~~y~aPE~~---------------~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~~~~---------------- 208 (257)
T cd05060 160 WPLKWYAPECI---------------NYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGAEVI---------------- 208 (257)
T ss_pred ccccccCHHHh---------------cCCCCCccchHHHHHHHHHHHHcCCCCCcccCCHHHHH----------------
Confidence 45789999998 23557789999999999999998 89 99654332111
Q ss_pred hHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 115 YMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
...... .........+..+.+++.+|+..+|++||++.++.+.+...
T Consensus 209 -~~~~~~---~~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~ 255 (257)
T cd05060 209 -AMLESG---ERLPRPEECPQEIYSIMLSCWKYRPEDRPTFSELESTFRRD 255 (257)
T ss_pred -HHHHcC---CcCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhc
Confidence 000000 00011122344588999999999999999999998887653
|
Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi |
| >cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3 | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-12 Score=121.52 Aligned_cols=100 Identities=15% Similarity=0.071 Sum_probs=62.7
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhh-hhhhccccCCCchh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELID-YIRCVSTKASDDNI 109 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~-~~~~~~~~~~~~~~ 109 (552)
.....||+.|||||++... ....++.++|+|||||++|+|++|+ ||...... .+.. ...
T Consensus 163 ~~~~~~~~~y~aPE~~~~~------------~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~~~~-~~~------ 223 (267)
T cd06645 163 RKSFIGTPYWMAPEVAAVE------------RKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFL-MTK------ 223 (267)
T ss_pred cccccCcccccChhhhccc------------cCCCCCchhhhHHHHHHHHHHhcCCCCcccccchhhHHh-hhc------
Confidence 3567899999999998210 1234678999999999999999999 98542211 0000 000
Q ss_pred hhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 110 ACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.................+.+++.+||+.+|++||++.++..
T Consensus 224 ----------~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~ll~ 264 (267)
T cd06645 224 ----------SNFQPPKLKDKMKWSNSFHHFVKMALTKNPKKRPTAEKLLQ 264 (267)
T ss_pred ----------cCCCCCcccccCCCCHHHHHHHHHHccCCchhCcCHHHHhc
Confidence 00000000000012234889999999999999999876543
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >KOG0586 consensus Serine/threonine protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-12 Score=126.26 Aligned_cols=117 Identities=19% Similarity=0.252 Sum_probs=84.6
Q ss_pred chhhhhhh-hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhh
Q 008820 6 GRRVTKSV-AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLS 82 (552)
Q Consensus 6 ~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~ 82 (552)
|+..++.| -||. |||-.+.- ++++.+++|||.|.|||.+ .| ....++++|+||||++||.
T Consensus 185 NilL~~~mnikIaDfgfS~~~~~---~~~lqt~cgsppyAaPEl~------~g--------~~y~gpe~D~Wslgvvly~ 247 (596)
T KOG0586|consen 185 NILLDENMNIKIADFGFSTFFDY---GLMLQTFCGSPPYAAPELF------NG--------KKYDGPEVDIWSLGVVLYA 247 (596)
T ss_pred hcccccccceeeeccccceeecc---cccccccCCCCCccChHhh------cC--------cccCCcceehhhhhhhhee
Confidence 34455555 5666 77866653 3579999999999999999 44 2345699999999999999
Q ss_pred hhhCC-CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 83 LLIGE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 83 lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
|+.|. ||++.++..+. .+.++.+ ..-....+.+++++|+++|-.+|.+|+++.++.+
T Consensus 248 LV~GsLPFDG~~lk~Lr----------------~rvl~gk-----~rIp~~ms~dce~lLrk~lvl~Pskr~~~dqim~ 305 (596)
T KOG0586|consen 248 LVEGSLPFDGQNLKELR----------------PRVLRGK-----YRIPFYMSCDCEDLLRKFLVLNPSKRGPCDQIMK 305 (596)
T ss_pred eeecccccCCccccccc----------------chheeee-----ecccceeechhHHHHHHhhccCccccCCHHHhhh
Confidence 99999 99998877432 0111110 0011113446999999999999999999886655
|
|
| >cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.4e-12 Score=125.01 Aligned_cols=113 Identities=17% Similarity=0.209 Sum_probs=66.6
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhh-hh---ccccCCC
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYI-RC---VSTKASD 106 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~-~~---~~~~~~~ 106 (552)
.....||+.|||||++ .| ...++.++|||||||++|||++|+ ||.+...... .. ..+...+
T Consensus 161 ~~~~~~~~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~g~~~~ 226 (372)
T cd07853 161 MTQEVVTQYYRAPEIL------MG--------SRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSL 226 (372)
T ss_pred CCCCCcCCCcCCHHHH------cC--------CCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCH
Confidence 4556789999999998 32 233568999999999999999999 9965433211 10 0111110
Q ss_pred chhhhhhhhHHHHHHHHHHHh---------hhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 107 DNIACLGMYMAWMEKVTYLLE---------NKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..+.. ............+. ........++.+++.+||+.+|.+||++.++..
T Consensus 227 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~ 287 (372)
T cd07853 227 EAMRS--ACEGARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALA 287 (372)
T ss_pred HHHHH--hhHHHHHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhc
Confidence 00000 00000000100000 001122445889999999999999999887655
|
Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription |
| >cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2 | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-12 Score=122.73 Aligned_cols=95 Identities=15% Similarity=0.205 Sum_probs=64.0
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhh-hhhhccccCCCchh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELID-YIRCVSTKASDDNI 109 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~-~~~~~~~~~~~~~~ 109 (552)
.....|++.|||||.+ . ....+.++|||||||++|+|++|+ ||...... .+.
T Consensus 172 ~~~~~~~~~y~aPE~~------~---------~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~~~~----------- 225 (296)
T cd06655 172 RSTMVGTPYWMAPEVV------T---------RKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALY----------- 225 (296)
T ss_pred CCCcCCCccccCcchh------c---------CCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHH-----------
Confidence 3456799999999998 2 245678999999999999999999 99654322 000
Q ss_pred hhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 110 ACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..... ..............+.+++.+||..+|.+||++.++..
T Consensus 226 -------~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~il~ 268 (296)
T cd06655 226 -------LIATN-GTPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQ 268 (296)
T ss_pred -------HHHhc-CCcccCCcccCCHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence 00000 00000011112335889999999999999999887655
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding |
| >cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.9e-12 Score=118.05 Aligned_cols=95 Identities=17% Similarity=0.215 Sum_probs=65.1
Q ss_pred hccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhh
Q 008820 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
...|+..|+|||++ ....++.++|||||||++|||++ |+ ||...+...+.
T Consensus 159 ~~~~~~~y~~pE~~---------------~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~------------- 210 (257)
T cd05040 159 HLKVPFAWCAPESL---------------RTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQIL------------- 210 (257)
T ss_pred CCCCCceecCHHHh---------------cccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHH-------------
Confidence 35688999999998 22456789999999999999999 99 99643322110
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHH
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l 162 (552)
...... .. ........+..+.+++.+|++.+|.+||+..++.+.+
T Consensus 211 ----~~~~~~-~~-~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l 255 (257)
T cd05040 211 ----KKIDKE-GE-RLERPEACPQDIYNVMLQCWAHNPADRPTFAALREFL 255 (257)
T ss_pred ----HHHHhc-CC-cCCCCccCCHHHHHHHHHHCCCCcccCCCHHHHHHHh
Confidence 000000 00 0001112234588999999999999999999988765
|
Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and |
| >cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase | Back alignment and domain information |
|---|
Probab=99.22 E-value=9e-12 Score=117.87 Aligned_cols=116 Identities=17% Similarity=0.184 Sum_probs=73.7
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
..|++ |++..+...+.. ......|+..|+|||++ . ...++.++|+|||||++|+|+| |+ |
T Consensus 140 ~~~l~d~~~~~~~~~~~~~-~~~~~~~~~~y~~PE~~------~---------~~~~~~~~Di~slG~~l~~l~t~g~~p 203 (260)
T cd05073 140 VCKIADFGLARVIEDNEYT-AREGAKFPIKWTAPEAI------N---------FGSFTIKSDVWSFGILLMEIVTYGRIP 203 (260)
T ss_pred cEEECCCcceeeccCCCcc-cccCCcccccccCHhHh------c---------cCCcCccccchHHHHHHHHHHhcCCCC
Confidence 34555 344444433221 23344577889999998 2 2456789999999999999999 89 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~ 164 (552)
|.......+. ...... ...+.......++.+++.+|+..+|++||+..++...+..
T Consensus 204 ~~~~~~~~~~-----------------~~~~~~---~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~ 259 (260)
T cd05073 204 YPGMSNPEVI-----------------RALERG---YRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD 259 (260)
T ss_pred CCCCCHHHHH-----------------HHHhCC---CCCCCcccCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence 9654333111 000000 0001112233458899999999999999999988877653
|
Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa |
| >cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8 | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.6e-12 Score=118.07 Aligned_cols=93 Identities=22% Similarity=0.346 Sum_probs=65.5
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
....|++.|||||++ . ....+.++|+|||||++|+|++|+ ||.......+.
T Consensus 159 ~~~~~~~~y~aPE~~------~---------~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~------------- 210 (256)
T cd08220 159 YTVVGTPCYISPELC------E---------GKPYNQKSDIWALGCVLYELASLKRAFEAANLPALV------------- 210 (256)
T ss_pred cccccCCcccCchhc------c---------CCCCCcccchHHHHHHHHHHHhCCCCcccCchHHHH-------------
Confidence 346799999999998 2 245678999999999999999999 99765433111
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..... .............+.+++.+||+.+|.+||++.++..
T Consensus 211 ----~~~~~---~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll~ 252 (256)
T cd08220 211 ----LKIMS---GTFAPISDRYSPDLRQLILSMLNLDPSKRPQLSQIMA 252 (256)
T ss_pred ----HHHHh---cCCCCCCCCcCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 00000 0001111123456999999999999999999988654
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with |
| >cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5 | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.6e-12 Score=118.15 Aligned_cols=93 Identities=17% Similarity=0.313 Sum_probs=64.6
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
....|++.|+|||++ ....++.++|+|||||++|||++|+ ||.......+.
T Consensus 160 ~~~~~~~~~~ape~~---------------~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~------------- 211 (257)
T cd08225 160 YTCVGTPYYLSPEIC---------------QNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNLHQLV------------- 211 (257)
T ss_pred cccCCCccccCHHHH---------------cCCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHH-------------
Confidence 446799999999998 2345678999999999999999999 99754433111
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.................++.+++.+|+..+|++||++.++.+
T Consensus 212 -------~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~ 253 (257)
T cd08225 212 -------LKICQGYFAPISPNFSRDLRSLISQLFKVSPRDRPSITSILK 253 (257)
T ss_pred -------HHHhcccCCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHhh
Confidence 000000000011122345899999999999999999888754
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. |
| >cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2 | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.3e-12 Score=120.61 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=65.7
Q ss_pred ccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhhhhh
Q 008820 37 ESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIACLGM 114 (552)
Q Consensus 37 g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (552)
+++.|||||++. ...++.++|||||||+||||+| |. ||.......+.
T Consensus 185 ~~~~y~aPE~~~---------------~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~---------------- 233 (303)
T cd05088 185 LPVRWMAIESLN---------------YSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELY---------------- 233 (303)
T ss_pred CcccccCHHHHh---------------ccCCcccccchhhhhHHHHHHhcCCCCcccCChHHHH----------------
Confidence 467899999982 2345689999999999999998 99 99654333110
Q ss_pred hHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 115 YMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 115 ~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
...+... .........++.+++.+|++.+|++||++.++...+..++
T Consensus 234 -----~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~ 281 (303)
T cd05088 234 -----EKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRML 281 (303)
T ss_pred -----HHHhcCCcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 1110000 0011123345889999999999999999999888877665
|
Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A |
| >cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.21 E-value=4e-12 Score=127.17 Aligned_cols=45 Identities=24% Similarity=0.479 Sum_probs=38.3
Q ss_pred hccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHH
Q 008820 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKEL 93 (552)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~ 93 (552)
..+||+.|||||++ . ...++.++|||||||+||||+||+ ||....
T Consensus 207 ~~~gt~~y~aPE~~------~---------~~~~~~~~DiwSlGvil~elltG~~Pf~~~~ 252 (377)
T cd05629 207 STVGTPDYIAPEIF------L---------QQGYGQECDWWSLGAIMFECLIGWPPFCSEN 252 (377)
T ss_pred ccCCCccccCHHHH------c---------cCCCCCceeeEecchhhhhhhcCCCCCCCCC
Confidence 36799999999998 2 245678999999999999999999 996543
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of |
| >cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1 | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.6e-12 Score=121.30 Aligned_cols=94 Identities=17% Similarity=0.176 Sum_probs=66.3
Q ss_pred cccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhhhhhh
Q 008820 38 SNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIACLGMY 115 (552)
Q Consensus 38 ~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (552)
+..|||||++ . ...++.++|||||||+||||++ |+ ||.......+
T Consensus 181 ~~~y~aPE~~------~---------~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~~~~------------------ 227 (297)
T cd05089 181 PVRWMAIESL------N---------YSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAEL------------------ 227 (297)
T ss_pred CccccCchhh------c---------cCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHH------------------
Confidence 5679999998 2 2456789999999999999998 99 9966443311
Q ss_pred HHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhhc
Q 008820 116 MAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (552)
Q Consensus 116 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~~ 167 (552)
........ .........++.+++.+|++.+|.+||++.++.+.+..++.
T Consensus 228 ---~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~ 277 (297)
T cd05089 228 ---YEKLPQGYRMEKPRNCDDEVYELMRQCWRDRPYERPPFAQISVQLSRMLE 277 (297)
T ss_pred ---HHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 01110000 00111233458899999999999999999999888877763
|
Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. |
| >cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-11 Score=119.26 Aligned_cols=114 Identities=13% Similarity=0.123 Sum_probs=66.5
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhh-hh---hhccccCCCc
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELID-YI---RCVSTKASDD 107 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~-~~---~~~~~~~~~~ 107 (552)
..-.|++.|||||++ .+ ...++.++|||||||++|+|+||+ ||...... .+ ..........
T Consensus 159 ~~~~~~~~y~aPE~~------~~--------~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (285)
T cd07861 159 THEVVTLWYRAPEVL------LG--------SPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQLFRIFRILGTPTED 224 (285)
T ss_pred cCCcccccccChHHh------cC--------CCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChh
Confidence 345789999999998 22 223567899999999999999999 99653221 11 0001111111
Q ss_pred hhhhhhhhHHHHHHHHHH----HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 108 NIACLGMYMAWMEKVTYL----LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.|.............+.. ..........++.+++.+||+.+|.+||++.++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~ 281 (285)
T cd07861 225 VWPGVTSLPDYKNTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALN 281 (285)
T ss_pred hhhcchhhHHHHhhccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence 221111111111111000 00111223456889999999999999999877654
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 |
| >cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2 | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.6e-12 Score=120.12 Aligned_cols=103 Identities=15% Similarity=0.091 Sum_probs=65.5
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh--CC-CchHHHhhhhhhccccCCCchh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI--GE-QFTKELIDYIRCVSTKASDDNI 109 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt--g~-pf~~~~~~~~~~~~~~~~~~~~ 109 (552)
+...+++.|||||+. . .+.++.++|||||||+||||++ |. ||...+...+..
T Consensus 190 ~~~~~~~~~~~pe~~------~---------~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~~~~~~---------- 244 (296)
T cd05095 190 GRAVLPIRWMSWESI------L---------LGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQVIE---------- 244 (296)
T ss_pred CcCcCccccCCHHHH------h---------cCCccchhhhhHHHHHHHHHHHhCCCCCccccChHHHHH----------
Confidence 344557899999987 2 2557789999999999999998 66 886533321100
Q ss_pred hhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHH
Q 008820 110 ACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (552)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~ 163 (552)
...............+........+.+++.+|++.+|.+||++.++.+.+.
T Consensus 245 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~ 295 (296)
T cd05095 245 ---NTGEFFRDQGRQVYLPKPALCPDSLYKLMLSCWRRNAKERPSFQEIHATLL 295 (296)
T ss_pred ---HHHHHHhhccccccCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHHh
Confidence 000000000000000111123345889999999999999999999888764
|
Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit |
| >KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.7e-12 Score=125.03 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=60.0
Q ss_pred cccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhhhhhhH
Q 008820 38 SNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIACLGMYM 116 (552)
Q Consensus 38 ~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (552)
|..|.|||++ ....++++||+|||||+||+||+|+ ||...-.. +
T Consensus 476 t~~y~APEvl---------------~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~-~------------------- 520 (612)
T KOG0603|consen 476 TLQYVAPEVL---------------AIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG-I------------------- 520 (612)
T ss_pred hhcccChhhh---------------ccCCCCcchhhHHHHHHHHHHHhCCCccccCCch-H-------------------
Confidence 7889999999 2356789999999999999999999 99541100 0
Q ss_pred HHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 117 AWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.++..+.. .......+.+.++++.+||+.+|.+|+++.++..
T Consensus 521 ei~~~i~~--~~~s~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~ 562 (612)
T KOG0603|consen 521 EIHTRIQM--PKFSECVSDEAKDLLQQLLQVDPALRLGADEIGA 562 (612)
T ss_pred HHHHhhcC--CccccccCHHHHHHHHHhccCChhhCcChhhhcc
Confidence 00110000 0000223445889999999999999999987654
|
|
| >cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.2e-12 Score=119.01 Aligned_cols=98 Identities=21% Similarity=0.363 Sum_probs=63.6
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
...+.|++.|||||++. . ....+.++|+|||||++|+|++|+ ||.........
T Consensus 163 ~~~~~~~~~y~~Pe~~~------~--------~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~------------ 216 (267)
T cd06610 163 RKTFVGTPCWMAPEVME------Q--------VHGYDFKADIWSFGITAIELATGAAPYSKYPPMKVL------------ 216 (267)
T ss_pred cccccCChhhcChHHHc------c--------ccCcCcccchHhHhHHHHHHHhCCCCccccChhhhH------------
Confidence 35567999999999982 1 114568999999999999999999 99654322110
Q ss_pred hhhhhHHHHHHHHHHHhh--hhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 111 CLGMYMAWMEKVTYLLEN--KFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.......+..... ........+.+++.+||+.+|++||++.++..
T Consensus 217 -----~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~ 263 (267)
T cd06610 217 -----MLTLQNDPPSLETGADYKKYSKSFRKMISLCLQKDPSKRPTAEELLK 263 (267)
T ss_pred -----HHHhcCCCCCcCCccccccccHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence 0000000000000 00112334789999999999999999877654
|
Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 |
| >KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.6e-12 Score=129.73 Aligned_cols=95 Identities=23% Similarity=0.288 Sum_probs=70.8
Q ss_pred cccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhhhhhhH
Q 008820 38 SNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIACLGMYM 116 (552)
Q Consensus 38 ~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (552)
||.|.|||++ ++++ ...+++|+|||+|||+||-|+... ||+..-..+|. ++. |.
T Consensus 218 Tp~YRsPEMI--Dlys----------g~pI~eKsDIWALGclLYkLCy~t~PFe~sg~laIl--ng~-----------Y~ 272 (738)
T KOG1989|consen 218 TPQYRSPEMI--DLYS----------GLPIGEKSDIWALGCLLYKLCYFTTPFEESGKLAIL--NGN-----------YS 272 (738)
T ss_pred CccccChHHH--hhhc----------CCCCcchhHHHHHHHHHHHHHHhCCCcCcCcceeEE--ecc-----------cc
Confidence 9999999999 3332 467899999999999999999999 99885333221 222 11
Q ss_pred HHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhhc
Q 008820 117 AWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (552)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~~ 167 (552)
+|.. +.....+.++|+.||+.+|++||...++...+.++..
T Consensus 273 --------~P~~--p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~ 313 (738)
T KOG1989|consen 273 --------FPPF--PNYSDRLKDLIRTMLQPNPDERPNIYQVLEEIFELAN 313 (738)
T ss_pred --------CCCC--ccHHHHHHHHHHHHhccCcccCCCHHHHHHHHHHHhc
Confidence 1110 1122348999999999999999999998888877653
|
|
| >cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.7e-12 Score=120.90 Aligned_cols=113 Identities=15% Similarity=0.190 Sum_probs=67.1
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhh----hhhccccCCC
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDY----IRCVSTKASD 106 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~----~~~~~~~~~~ 106 (552)
.....||+.|+|||++ .+ ...++.++|||||||++|+|+||+ ||...+... +........+
T Consensus 161 ~~~~~~~~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~ 226 (309)
T cd07872 161 YSNEVVTLWYRPPDVL------LG--------SSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTE 226 (309)
T ss_pred cccccccccccCCHHH------hC--------CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCH
Confidence 3456789999999998 22 234678999999999999999999 996543221 1111111111
Q ss_pred chhhhhhhhHHHHHHHHHHH-------hhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 107 DNIACLGMYMAWMEKVTYLL-------ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..|........... ...+ .........++.+++.+||+.+|.+||++.++.+
T Consensus 227 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~ 285 (309)
T cd07872 227 ETWPGISSNDEFKN--YNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMK 285 (309)
T ss_pred HHHhhhcchhhhhh--hhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhc
Confidence 12211100000000 0000 0011123445889999999999999999887655
|
Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play |
| >cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.2e-12 Score=117.96 Aligned_cols=91 Identities=20% Similarity=0.277 Sum_probs=61.7
Q ss_pred ccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhhhhh
Q 008820 37 ESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIACLGM 114 (552)
Q Consensus 37 g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (552)
+++.|+|||++ . .+.++.++|||||||++|||++ |. ||.........
T Consensus 158 ~~~~y~aPE~~------~---------~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~~~~---------------- 206 (252)
T cd05084 158 IPVKWTAPEAL------N---------YGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQTR---------------- 206 (252)
T ss_pred CceeecCchhh------c---------CCCCChHHHHHHHHHHHHHHHhCCCCCccccCHHHHH----------------
Confidence 35679999998 2 2556789999999999999998 88 98643322110
Q ss_pred hHHHHHHHHH-HHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHH
Q 008820 115 YMAWMEKVTY-LLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (552)
Q Consensus 115 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~ 163 (552)
..... .........+..+.+++.+||+.+|++||++.++.+.+.
T Consensus 207 -----~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~ 251 (252)
T cd05084 207 -----EAIEQGVRLPCPELCPDAVYRLMERCWEYDPGQRPSFSTVHQELQ 251 (252)
T ss_pred -----HHHHcCCCCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHh
Confidence 00000 000111122345889999999999999999999877653
|
Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular |
| >cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta | Back alignment and domain information |
|---|
Probab=99.21 E-value=9e-12 Score=124.65 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=68.5
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
....|++.|||||++ . ...++.++|||||||+||||++ |+ ||.........
T Consensus 299 ~~~~~~~~y~aPE~~------~---------~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~~~------------ 351 (401)
T cd05107 299 GSTFLPLKWMAPESI------F---------NNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQF------------ 351 (401)
T ss_pred CCcCCCCceeChHHh------c---------CCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchHHH------------
Confidence 345688999999998 2 2446789999999999999998 88 98653222000
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
....... ...........++.+++.+|+..+|.+||++.++.+.+..++
T Consensus 352 ----~~~~~~~---~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~ell~~L~~~~ 400 (401)
T cd05107 352 ----YNAIKRG---YRMAKPAHASDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDLL 400 (401)
T ss_pred ----HHHHHcC---CCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence 0000000 000011123446899999999999999999999999887754
|
Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D |
| >cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.9e-12 Score=119.27 Aligned_cols=104 Identities=20% Similarity=0.302 Sum_probs=65.7
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
....||+.|+|||++ . ....+.++|+|||||++|+|+||+ ||........ ....+..
T Consensus 160 ~~~~~~~~~~aPE~~------~---------~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~----~~~~~~~--- 217 (284)
T cd06620 160 DTFVGTSTYMSPERI------Q---------GGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDD----GQDDPMG--- 217 (284)
T ss_pred CccccCcccCCHHHH------c---------cCCCCccchHHHHHHHHHHHHhCCCCCcccchhhh----hhhhhhH---
Confidence 356899999999998 2 245678999999999999999999 9975432200 0000000
Q ss_pred hhhhHHHHHHHHHHHhhhh-cC-ccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 112 LGMYMAWMEKVTYLLENKF-GS-EFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
................ .. ...++.+++.+|++.+|++||++.++.+.
T Consensus 218 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~ 266 (284)
T cd06620 218 ---ILDLLQQIVQEPPPRLPSSDFPEDLRDFVDACLLKDPTERPTPQQLCAM 266 (284)
T ss_pred ---HHHHHHHHhhccCCCCCchhcCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence 0001111100000000 01 23358899999999999999999887664
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.5e-12 Score=121.52 Aligned_cols=101 Identities=14% Similarity=0.156 Sum_probs=64.5
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
...+.||+.|||||++..... ....++.++|+|||||++|||++|+ ||.........
T Consensus 160 ~~~~~~~~~y~aPE~~~~~~~----------~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~------------ 217 (282)
T cd06643 160 RDSFIGTPYWMAPEVVMCETS----------KDRPYDYKADVWSLGITLIEMAQIEPPHHELNPMRVL------------ 217 (282)
T ss_pred cccccccccccCHhhccccCC----------CCCCCCccchhhhHHHHHHHHccCCCCccccCHHHHH------------
Confidence 345789999999999821100 1234567999999999999999999 99654322110
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
......... ..........++.+++.+||+.+|.+||++.++.+
T Consensus 218 -----~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 261 (282)
T cd06643 218 -----LKIAKSEPP-TLAQPSRWSSEFKDFLKKCLEKNVDARWTTTQLLQ 261 (282)
T ss_pred -----HHHhhcCCC-CCCCccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 000000000 00011122345899999999999999999877554
|
Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. |
| >cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.6e-12 Score=118.47 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=63.9
Q ss_pred ccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhhhhh
Q 008820 37 ESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIACLGM 114 (552)
Q Consensus 37 g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (552)
++..|||||++ . ...++.++|||||||++|||+| |+ ||.+.....+.
T Consensus 166 ~~~~y~aPE~~------~---------~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~---------------- 214 (261)
T cd05068 166 FPIKWTAPEAA------L---------YNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAEVL---------------- 214 (261)
T ss_pred CceeccCcccc------c---------cCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHH----------------
Confidence 34689999998 2 2456789999999999999999 88 99664433111
Q ss_pred hHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHh
Q 008820 115 YMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (552)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~ 164 (552)
...... . ........+..+.+++.+|++.+|.+||++.++...+..
T Consensus 215 -~~~~~~-~--~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~ 260 (261)
T cd05068 215 -QQVDQG-Y--RMPCPPGCPKELYDIMLDCWKEDPDDRPTFETLQWKLED 260 (261)
T ss_pred -HHHHcC-C--CCCCCCcCCHHHHHHHHHHhhcCcccCCCHHHHHHHHhc
Confidence 000000 0 000111234458999999999999999999998876653
|
Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-08 Score=103.68 Aligned_cols=214 Identities=11% Similarity=0.083 Sum_probs=133.7
Q ss_pred CcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEc--CCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEe
Q 008820 272 KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGD--SGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALT 349 (552)
Q Consensus 272 g~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (552)
..|.+||.+ +...+.+..|...+.+.+|+|+++.++++.. .+..|.+||+.++... .+..... ......++
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g-----~~~~~~~S 254 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPG-----MTFAPRFS 254 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCC-----cccCcEEC
Confidence 378899975 4455667778889999999998886655543 3468999999866432 2221111 11134789
Q ss_pred eCCCEEE-EeeCCCc--EEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeC-CC--cEEEEECCCCceeEEEecC
Q 008820 350 TSGRYLY-TGSGDRT--IKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSR-DG--TIRLWSLSDHSLLTVLEED 421 (552)
Q Consensus 350 ~~~~~l~-sgs~dg~--i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~ 421 (552)
|+|+.|+ +.+.++. |++||+.+++.. .+..+........|+ ++ .++..+. +| .|+++|+.+++... +...
T Consensus 255 PDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~ 332 (435)
T PRK05137 255 PDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFG 332 (435)
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecC
Confidence 9998664 5555555 778898877654 455566666778898 43 6665553 33 68888987665433 3322
Q ss_pred CCCceEEEEEEcCCCCEEEEEECC---CcEEEEeCCc-ceeeee-cccceEEEEEecCCEEEEEeCC------CeEEEEe
Q 008820 422 SSGAVSSVLSLTAVQHTLVVSHES---GSIKVWRNDK-FMKSMQ-THKGSVFAVFLEGKWLFTGGWD------KTVSVQE 490 (552)
Q Consensus 422 ~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iwd~~~-~~~~~~-~h~~~v~~v~~~~~~l~sgs~d------g~i~iwd 490 (552)
.+.... ..|+|+|+.|+..+.+ ..|.+||... ....+. .+...-.++++||+.|+..+.+ ..++++|
T Consensus 333 -~~~~~~-~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d 410 (435)
T PRK05137 333 -GGRYST-PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD 410 (435)
T ss_pred -CCcccC-eEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence 222233 5799999999877643 3577888532 223332 1211223445689988765543 2578888
Q ss_pred cCCCee
Q 008820 491 LAGDEF 496 (552)
Q Consensus 491 ~~~~~~ 496 (552)
+.++..
T Consensus 411 l~g~~~ 416 (435)
T PRK05137 411 LTGRNE 416 (435)
T ss_pred CCCCce
Confidence 876544
|
|
| >cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-11 Score=117.85 Aligned_cols=117 Identities=12% Similarity=0.116 Sum_probs=76.9
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
+|.. |+++.+.............+++.|||||.+ ....++.++|+|||||++|||++ |+ ||
T Consensus 148 ~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~---------------~~~~~~~~~Di~slG~~l~el~~~g~~p~ 212 (279)
T cd05057 148 VKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESI---------------LHRIYTHKSDVWSYGVTVWELMTFGAKPY 212 (279)
T ss_pred EEECCCcccccccCcccceecCCCcccccccCHHHh---------------hcCCcCchhhHHHHHHHHHHHhcCCCCCC
Confidence 4555 455555433322122334457889999998 22456789999999999999999 99 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHH-HHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTY-LLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
+......+. ..+.. ............+.+++.+|+..+|.+||+..++.+.+..+.
T Consensus 213 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~~ 269 (279)
T cd05057 213 EGIPAVEIP---------------------DLLEKGERLPQPPICTIDVYMVLVKCWMIDAESRPTFKELINEFSKMA 269 (279)
T ss_pred CCCCHHHHH---------------------HHHhCCCCCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence 764433111 11000 001111223445889999999999999999999999888765
|
Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea |
| >KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-11 Score=107.48 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=71.7
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
-+.++||..|.+||+. .| ...+...|+|++|++.||+|.|. ||+..+..
T Consensus 179 R~tlcgt~dyl~pEmv------~~---------~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~--------------- 228 (281)
T KOG0580|consen 179 RKTLCGTLDYLPPEMV------EG---------RGHDKFVDLWSLGVLCYEFLVGLPPFESQSHS--------------- 228 (281)
T ss_pred ceeeecccccCCHhhc------CC---------CCccchhhHHHHHHHHHHHHhcCCchhhhhhH---------------
Confidence 5789999999999999 33 44568999999999999999999 99886643
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
.+++.+..-....| .......+++|.+||.++|.+|....++...
T Consensus 229 --etYkrI~k~~~~~p----~~is~~a~dlI~~ll~~~p~~r~~l~~v~~h 273 (281)
T KOG0580|consen 229 --ETYKRIRKVDLKFP----STISGGAADLISRLLVKNPIERLALTEVMDH 273 (281)
T ss_pred --HHHHHHHHccccCC----cccChhHHHHHHHHhccCccccccHHHHhhh
Confidence 23444443322222 2244569999999999999999998776653
|
|
| >cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1 | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.3e-12 Score=125.00 Aligned_cols=46 Identities=24% Similarity=0.423 Sum_probs=39.4
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHH
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKEL 93 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~ 93 (552)
....||+.|||||++ . ...++.++|||||||+||||++|+ ||...+
T Consensus 194 ~~~~Gt~~Y~aPE~~------~---------~~~~~~~~DvwSlGvil~ell~G~~Pf~~~~ 240 (363)
T cd05628 194 FSTVGTPDYIAPEVF------M---------QTGYNKLCDWWSLGVIMYEMLIGYPPFCSET 240 (363)
T ss_pred ccccCCccccCHHHH------c---------CCCCCCchhhhhhHHHHHHHHhCCCCCCCCC
Confidence 457899999999999 2 245678999999999999999999 997644
|
Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus |
| >cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-11 Score=119.24 Aligned_cols=94 Identities=14% Similarity=0.133 Sum_probs=63.9
Q ss_pred ccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhhh
Q 008820 35 FLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIACL 112 (552)
Q Consensus 35 ~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~~ 112 (552)
..+++.|||||++ . ...++.++|||||||++|||++ |. ||.+.....+.
T Consensus 192 ~~~~~~y~aPE~~------~---------~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~~~~~-------------- 242 (288)
T cd05050 192 DAIPIRWMPPESI------F---------YNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAHEEVI-------------- 242 (288)
T ss_pred CccChhhcCHHHH------h---------cCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHH--------------
Confidence 3457889999998 2 2456789999999999999998 88 99653323110
Q ss_pred hhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHH
Q 008820 113 GMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (552)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~ 163 (552)
....... ..........++.+++.+||+.+|.+||++.++.+.+.
T Consensus 243 ---~~~~~~~---~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l~ 287 (288)
T cd05050 243 ---YYVRDGN---VLSCPDNCPLELYNLMRLCWSKLPSDRPSFASINRILQ 287 (288)
T ss_pred ---HHHhcCC---CCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHhh
Confidence 0000000 00001112345899999999999999999999887654
|
Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M |
| >cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-11 Score=118.98 Aligned_cols=95 Identities=15% Similarity=0.268 Sum_probs=63.7
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
....|++.|||||++ . ...++.++|||||||++|||++|+ ||........
T Consensus 173 ~~~~~~~~y~aPE~~------~---------~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~~~~-------------- 223 (285)
T cd06648 173 KSLVGTPYWMAPEVI------S---------RLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQA-------------- 223 (285)
T ss_pred ccccCCccccCHHHh------c---------CCCCCCcccHHHHHHHHHHHHhCCCCCcCCCHHHH--------------
Confidence 346799999999998 2 245678999999999999999999 9965332210
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
........+. ...........+.+++.+||+.+|++||++.++.+
T Consensus 224 ---~~~~~~~~~~-~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~ 268 (285)
T cd06648 224 ---MKRIRDNLPP-KLKNLHKVSPRLRSFLDRMLVRDPAQRATAAELLN 268 (285)
T ss_pred ---HHHHHhcCCC-CCcccccCCHHHHHHHHHHcccChhhCcCHHHHcc
Confidence 0000000000 00001112345899999999999999999877655
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun |
| >cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4 | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.8e-12 Score=120.41 Aligned_cols=95 Identities=20% Similarity=0.320 Sum_probs=64.4
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....|+..|+|||++ . ....+.++|+|||||++|||+||+ ||................
T Consensus 158 ~~~~~~~~~y~apE~~------~---------~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~----- 217 (277)
T cd06640 158 RNTFVGTPFWMAPEVI------Q---------QSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRVLFLIPKNN----- 217 (277)
T ss_pred cccccCcccccCHhHh------c---------cCCCccHHHHHHHHHHHHHHHHCCCCCCCcChHhHhhhhhcCC-----
Confidence 3446789999999998 2 245678999999999999999999 996543221110000000
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
+.........++.+++.+||+.+|.+||++.++..+
T Consensus 218 ---------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~ 253 (277)
T cd06640 218 ---------------PPTLTGEFSKPFKEFIDACLNKDPSFRPTAKELLKH 253 (277)
T ss_pred ---------------CCCCchhhhHHHHHHHHHHcccCcccCcCHHHHHhC
Confidence 000000122348899999999999999999887664
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter |
| >cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6 | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.9e-12 Score=121.10 Aligned_cols=95 Identities=13% Similarity=0.229 Sum_probs=64.0
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhh-hhhhccccCCCchhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELID-YIRCVSTKASDDNIA 110 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~-~~~~~~~~~~~~~~~ 110 (552)
....|++.|+|||++ . ....+.++|+|||||++|||++|+ ||...... .+.
T Consensus 175 ~~~~~~~~y~aPE~~------~---------~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~------------ 227 (297)
T cd06659 175 KSLVGTPYWMAPEVI------S---------RTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMK------------ 227 (297)
T ss_pred cceecCccccCHHHH------c---------cCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHH------------
Confidence 456799999999998 2 245678999999999999999999 99543221 111
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
.+..... ............+.+++.+||+.+|.+||++.++.+.
T Consensus 228 ------~~~~~~~-~~~~~~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~~ 271 (297)
T cd06659 228 ------RLRDSPP-PKLKNAHKISPVLRDFLERMLTREPQERATAQELLDH 271 (297)
T ss_pred ------HHhccCC-CCccccCCCCHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence 0000000 0000111123358899999999999999998877663
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i |
| >KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.2e-12 Score=124.33 Aligned_cols=115 Identities=18% Similarity=0.262 Sum_probs=74.5
Q ss_pred hhhcccccccccccchhhhhhhccccccccchHHHHHH-hhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 13 VAKVGCVGSRICDKEVGLFLSDFLESNVFFSPEVLYEL-FKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~-~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
+|+-|=-||+-..... --.|.|||.|||||++.=+ ++ ...|++++||||||++|.||.-+. |-.
T Consensus 171 LADFGVSAKn~~t~qk---RDsFIGTPYWMAPEVvmCET~K-----------D~PYDykaDiWSlGITLIEMAqiEPPHh 236 (1187)
T KOG0579|consen 171 LADFGVSAKNKSTRQK---RDSFIGTPYWMAPEVVMCETFK-----------DQPYDYKADIWSLGITLIEMAQIEPPHH 236 (1187)
T ss_pred eecccccccchhHHhh---hccccCCcccccchheeecccc-----------CCCchhhhhHHhhhhHHHHHhccCCCcc
Confidence 4554433444444333 4579999999999998221 11 256789999999999999999999 654
Q ss_pred HHHhhhh-hhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYI-RCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.-++.++ ..+.. ..|+.+ -.+.++..++.+++.+||.++|..||+++++.+
T Consensus 237 elnpMRVllKiaK------------------SePPTL-lqPS~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~ 288 (1187)
T KOG0579|consen 237 ELNPMRVLLKIAK------------------SEPPTL-LQPSHWSRSFSDFLKRCLVKNPRNRPPAAQLLK 288 (1187)
T ss_pred ccchHHHHHHHhh------------------cCCCcc-cCcchhhhHHHHHHHHHHhcCCccCCCHHHHhh
Confidence 3332211 11111 001001 112345667999999999999999999887655
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.3e-09 Score=104.36 Aligned_cols=213 Identities=12% Similarity=0.108 Sum_probs=134.9
Q ss_pred eecCccceEEEEEc--CCEEEEEeC---CCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCC--cEEEE
Q 008820 248 LQGHRDCVTGLAVG--GGFLFSSSF---DKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGG--GIFVW 320 (552)
Q Consensus 248 l~~H~~~V~~l~~s--~~~l~s~s~---dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg--~i~vw 320 (552)
+..+...+.+.+|+ |+.|+..+. +..|.+||+.+++... +....+.+..++|+|++..++++.+.+| .|.+|
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 34456688999999 888876543 4579999998876433 2223334556899999987877766666 48888
Q ss_pred eCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCC-C--cEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EE
Q 008820 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD-R--TIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VL 395 (552)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d-g--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l 395 (552)
|++++....... .. .......++|+|+.|+..+.+ + .|+.+|+.+++.. .+..+.....+..|+ ++ .+
T Consensus 273 d~~tg~~~~lt~----~~--~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 273 DLASGQIRQVTD----GR--SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFM 345 (429)
T ss_pred ECCCCCEEEccC----CC--CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEE
Confidence 987654322111 11 111234789999988776654 4 4555577666543 333344455677888 33 66
Q ss_pred EEEeCC---CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCc---EEEEeC-CcceeeeecccceEE
Q 008820 396 YSGSRD---GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGS---IKVWRN-DKFMKSMQTHKGSVF 468 (552)
Q Consensus 396 ~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~---i~iwd~-~~~~~~~~~h~~~v~ 468 (552)
+..+.+ ..|.+||+.+++.. .+.... .... ..|+|||+.|+.++.++. +++++. +.....+.+|.+.+.
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~--~~~~-p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~ 421 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQ-VLTDTF--LDET-PSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVK 421 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EeCCCC--CCCC-ceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcC
Confidence 555433 35888999887643 333221 1112 579999999999888765 566675 345666777777666
Q ss_pred EEEe
Q 008820 469 AVFL 472 (552)
Q Consensus 469 ~v~~ 472 (552)
..+|
T Consensus 422 ~p~W 425 (429)
T PRK03629 422 FPAW 425 (429)
T ss_pred Cccc
Confidence 5554
|
|
| >cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3 | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-11 Score=121.05 Aligned_cols=118 Identities=14% Similarity=0.200 Sum_probs=74.9
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
.|++ |+++.+.............+++.|||||++ . ...++.++|||||||+||||++ |. ||
T Consensus 173 ~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~il~el~~~g~~p~ 237 (334)
T cd05100 173 MKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEAL------F---------DRVYTHQSDVWSFGVLLWEIFTLGGSPY 237 (334)
T ss_pred EEECCcccceecccccccccccCCCcCceEcCHHHh------c---------cCCcCchhhhHHHHHHHHHHHhcCCCCC
Confidence 4444 445544433221112334456789999998 2 2456689999999999999999 78 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
.......+. ...... ...........++.+++.+|++.+|.+||++.++...+..+.
T Consensus 238 ~~~~~~~~~-----------------~~~~~~---~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~~ 294 (334)
T cd05100 238 PGIPVEELF-----------------KLLKEG---HRMDKPANCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVL 294 (334)
T ss_pred CCCCHHHHH-----------------HHHHcC---CCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHh
Confidence 664433110 000000 000011112345889999999999999999999999888765
|
Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to |
| >cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-11 Score=118.08 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=65.5
Q ss_pred ccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhhhhh
Q 008820 37 ESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIACLGM 114 (552)
Q Consensus 37 g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (552)
.++.|+|||++ ....++.++|||||||+||||++ |+ ||.......+.
T Consensus 173 ~~~~y~apE~~---------------~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~---------------- 221 (270)
T cd05047 173 LPVRWMAIESL---------------NYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELY---------------- 221 (270)
T ss_pred CccccCChHHH---------------ccCCCCchhhHHHHHHHHHHHHcCCCCCccccCHHHHH----------------
Confidence 36789999998 22456789999999999999997 99 99654332110
Q ss_pred hHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 115 YMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 115 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
...+.. ..........++.+++.+|+..+|.+||++.++...+.+++
T Consensus 222 -----~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~~ 269 (270)
T cd05047 222 -----EKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRML 269 (270)
T ss_pred -----HHHhCCCCCCCCCcCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHhh
Confidence 100000 00011112345889999999999999999999998887654
|
Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l |
| >cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1 | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.1e-12 Score=117.93 Aligned_cols=93 Identities=19% Similarity=0.388 Sum_probs=63.1
Q ss_pred hccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhh-hCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLL-IGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~ll-tg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
...||+.|||||++ .+ ...++.++|||||||+||||+ +|+ ||.........
T Consensus 167 ~~~~~~~y~aPE~~------~~--------~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~------------- 219 (262)
T cd05077 167 ECVERIPWIAPECV------ED--------SKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAEKE------------- 219 (262)
T ss_pred cccccccccChhhh------cC--------CCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhHHH-------------
Confidence 46789999999998 21 234668999999999999998 577 88653322110
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHH
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l 162 (552)
. .... ..........++.+++.+||+.+|.+||+..++.+.+
T Consensus 220 ----~-~~~~----~~~~~~~~~~~~~~li~~cl~~dp~~Rp~~~~il~~~ 261 (262)
T cd05077 220 ----R-FYEG----QCMLVTPSCKELADLMTHCMNYDPNQRPFFRAIMRDI 261 (262)
T ss_pred ----H-HHhc----CccCCCCChHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence 0 0000 0000011223588999999999999999999887764
|
Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom |
| >KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-11 Score=117.60 Aligned_cols=137 Identities=20% Similarity=0.287 Sum_probs=89.7
Q ss_pred EEecchhhhhhhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhh
Q 008820 2 ILVMGRRVTKSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACI 79 (552)
Q Consensus 2 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~ 79 (552)
||+|| .-+-|++ |||+.+..+.- .++-+-|.+|.|||++. ..+.++.+.|+||+|||
T Consensus 141 iLi~~----~~~iKiaDFGLARev~SkpP---YTeYVSTRWYRAPEvLL--------------rs~~Ys~pvD~wA~GcI 199 (538)
T KOG0661|consen 141 ILISG----NDVIKIADFGLAREVRSKPP---YTEYVSTRWYRAPEVLL--------------RSGYYSSPVDMWAVGCI 199 (538)
T ss_pred eEecc----cceeEecccccccccccCCC---cchhhhcccccchHHhh--------------hccccCCchHHHHHHHH
Confidence 78888 3455666 89999888854 68999999999999993 24778899999999999
Q ss_pred hhhhhhCC-CchHHH-hhhh---hhccccCCCchhhhhhhhHHHHHH---HHHHH----hhhhcCccccHHHHHHhhccc
Q 008820 80 LLSLLIGE-QFTKEL-IDYI---RCVSTKASDDNIACLGMYMAWMEK---VTYLL----ENKFGSEFVSLQLMFCQCLNF 147 (552)
Q Consensus 80 l~~lltg~-pf~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~l~~~~~~~l~~ 147 (552)
++|+.+=+ -|.+.+ ..+| -++-+-.....|-.. ++....- .+... .........++.+++.+||+.
T Consensus 200 ~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg--~~La~~mnf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~W 277 (538)
T KOG0661|consen 200 MAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWPEG--YNLASAMNFRFPQVKPSPLKDLLPNASSEAASLIERLLAW 277 (538)
T ss_pred HHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccchhH--HHHHHHhccCCCcCCCCChHHhCcccCHHHHHHHHHHhcC
Confidence 99999999 664432 2222 323333332233110 1100000 01111 111222455688999999999
Q ss_pred CCCCCcchhhHHHH
Q 008820 148 DPGCRPLLTNVWKC 161 (552)
Q Consensus 148 ~p~~R~~~~~~~~~ 161 (552)
||.+||++.+..+.
T Consensus 278 DP~kRpTA~~al~~ 291 (538)
T KOG0661|consen 278 DPDKRPTASQALQH 291 (538)
T ss_pred CCccCccHHHHhcC
Confidence 99999999876653
|
|
| >PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-11 Score=116.86 Aligned_cols=102 Identities=22% Similarity=0.302 Sum_probs=67.5
Q ss_pred hhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchh
Q 008820 31 FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNI 109 (552)
Q Consensus 31 ~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~ 109 (552)
......||+.|+|||++ . .....+.++||||||+++|+|++|. ||.........
T Consensus 154 ~~~~~~~~~~y~aPE~~------~--------~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~~~----------- 208 (260)
T PF00069_consen 154 NFNPFVGTPEYMAPEVL------Q--------QGKKYTRKSDIWSLGIILYELLTGKLPFEESNSDDQL----------- 208 (260)
T ss_dssp EBSSSSSSGGGSCHHHH------T--------TTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHHHH-----------
T ss_pred ccccccccccccccccc------c--------ccccccccccccccccccccccccccccccccchhhh-----------
Confidence 36788999999999998 2 0356778999999999999999999 99764111000
Q ss_pred hhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 110 ACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
........................+.+++.+||+.+|.+||++.++.+
T Consensus 209 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~l~~ 256 (260)
T PF00069_consen 209 ---EIIEKILKRPLPSSSQQSREKSEELRDLIKKMLSKDPEQRPSAEELLK 256 (260)
T ss_dssp ---HHHHHHHHTHHHHHTTSHTTSHHHHHHHHHHHSSSSGGGSTTHHHHHT
T ss_pred ---hhhhhcccccccccccccchhHHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 000111111111111111112256999999999999999999887654
|
Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A .... |
| >cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.9e-12 Score=121.05 Aligned_cols=115 Identities=16% Similarity=0.206 Sum_probs=66.3
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhh-hh---ccccCCC
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYI-RC---VSTKASD 106 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~-~~---~~~~~~~ 106 (552)
.....||+.|+|||++. + ...++.++|||||||+||||+||+ ||...+.... .. .......
T Consensus 161 ~~~~~~~~~y~~PE~~~------~--------~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~ 226 (301)
T cd07873 161 YSNEVVTLWYRPPDILL------G--------STDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTE 226 (301)
T ss_pred ccccceeecccCcHHHh------C--------CCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCh
Confidence 34567899999999982 2 233567999999999999999999 9965433211 10 0011111
Q ss_pred chhhhhhhhHHHHH----H-HHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 107 DNIACLGMYMAWME----K-VTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 107 ~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..|........+.. . .........+.....+.+++.+||..+|.+||++.++..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~ 285 (301)
T cd07873 227 ETWPGILSNEEFKSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMK 285 (301)
T ss_pred hhchhhhccccccccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence 11110000000000 0 000001111223445889999999999999999887655
|
Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl |
| >cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3 | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-11 Score=117.48 Aligned_cols=98 Identities=15% Similarity=0.251 Sum_probs=66.8
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
....+++.||+||.+. ....+.++|||||||++|||++ |+ ||.......+.
T Consensus 173 ~~~~~~~~~~~pe~~~---------------~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~~~~~------------ 225 (273)
T cd05074 173 CASKLPVKWLALESLA---------------DNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENSEIY------------ 225 (273)
T ss_pred CCccCchhhcCHhHHh---------------cCccchhhhhHHHHHHHHHHhhCCCCCCCCCCHHHHH------------
Confidence 3445678999999982 2445689999999999999999 88 98654322110
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
...... . ........+..+.+++.+|++.+|++||++.++...+..+
T Consensus 226 -----~~~~~~--~-~~~~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~ 272 (273)
T cd05074 226 -----NYLIKG--N-RLKQPPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQLELI 272 (273)
T ss_pred -----HHHHcC--C-cCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence 000000 0 0000112334589999999999999999999999887654
|
Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac |
| >cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1 | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-11 Score=116.67 Aligned_cols=93 Identities=16% Similarity=0.288 Sum_probs=64.5
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
....|++.|+|||++ . ....+.++|+|||||++|+|++|+ ||.......+.
T Consensus 159 ~~~~~~~~~~~pe~~------~---------~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~------------- 210 (256)
T cd08218 159 RTCIGTPYYLSPEIC------E---------NRPYNNKSDIWALGCVLYEMCTLKHAFEAGNMKNLV------------- 210 (256)
T ss_pred hhccCCccccCHHHh------C---------CCCCCCccchhHHHHHHHHHHcCCCCccCCCHHHHH-------------
Confidence 456799999999998 2 245668999999999999999999 99654333110
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
....... ..........++.+++.+|++.+|.+||++.++.+
T Consensus 211 ---~~~~~~~----~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl~ 252 (256)
T cd08218 211 ---LKIIRGS----YPPVSSHYSYDLRNLVSQLFKRNPRDRPSVNSILE 252 (256)
T ss_pred ---HHHhcCC----CCCCcccCCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence 0000000 00011122345889999999999999999988765
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti |
| >cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2 | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.1e-12 Score=119.26 Aligned_cols=96 Identities=13% Similarity=0.213 Sum_probs=63.2
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....|++.|+|||++ .+ ..++.++|||||||++|+|++|+ ||................+
T Consensus 156 ~~~~~~~~~y~~PE~~------~~---------~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~~~~~~~~~~~---- 216 (256)
T cd06612 156 RNTVIGTPFWMAPEVI------QE---------IGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIFMIPNKPP---- 216 (256)
T ss_pred cccccCCccccCHHHH------hc---------CCCCchhhHHHHHHHHHHHHhCCCCCCCcchhhhhhhhccCCC----
Confidence 3456799999999998 22 45678999999999999999999 9965332211000000000
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.. ..........+.+++.+|++.+|++||++.++..
T Consensus 217 -----~~---------~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~il~ 252 (256)
T cd06612 217 -----PT---------LSDPEKWSPEFNDFVKKCLVKDPEERPSAIQLLQ 252 (256)
T ss_pred -----CC---------CCchhhcCHHHHHHHHHHHhcChhhCcCHHHHhc
Confidence 00 0000011234889999999999999999887654
|
Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a |
| >cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-11 Score=116.14 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=63.4
Q ss_pred cccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhhhh
Q 008820 36 LESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIACLG 113 (552)
Q Consensus 36 ~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~~~ 113 (552)
.+++.|+|||++ ....++.++|||||||++|+|++ |. ||.........
T Consensus 155 ~~~~~y~aPE~~---------------~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~~~~--------------- 204 (250)
T cd05085 155 QIPIKWTAPEAL---------------NYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQQAR--------------- 204 (250)
T ss_pred CCcccccCHHHh---------------ccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHHHHH---------------
Confidence 446789999998 23556789999999999999999 99 99654322110
Q ss_pred hhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHH
Q 008820 114 MYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (552)
Q Consensus 114 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l 162 (552)
...... ...........+.+++.+|++.+|++||++.++.+.+
T Consensus 205 ------~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l 248 (250)
T cd05085 205 ------EQVEKGYRMSCPQKCPDDVYKVMQRCWDYKPENRPKFSELQKEL 248 (250)
T ss_pred ------HHHHcCCCCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHh
Confidence 000000 0011112334589999999999999999999988764
|
Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c |
| >PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.8e-12 Score=119.01 Aligned_cols=115 Identities=21% Similarity=0.213 Sum_probs=70.5
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~- 87 (552)
..+|++ |+++.+.............+...|+|||.+. ....+.++||||||+++||+++ |+
T Consensus 140 ~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~---------------~~~~~~ksDVysfG~~l~ei~~~~~~ 204 (259)
T PF07714_consen 140 GQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLK---------------DGEYTKKSDVYSFGMLLYEILTLGKF 204 (259)
T ss_dssp TEEEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHH---------------HSEESHHHHHHHHHHHHHHHHTTSSG
T ss_pred ccccccccccccccccccccccccccccccccccccccc---------------cccccccccccccccccccccccccc
Confidence 356666 3444442222222345567889999999992 2446789999999999999999 77
Q ss_pred CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHH
Q 008820 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (552)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l 162 (552)
||.......+ .....+.. ..........+.+++.+|++.+|.+||++.++.+.|
T Consensus 205 p~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~~L 259 (259)
T PF07714_consen 205 PFSDYDNEEI---------------------IEKLKQGQRLPIPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQEL 259 (259)
T ss_dssp TTTTSCHHHH---------------------HHHHHTTEETTSBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred cccccccccc---------------------cccccccccceeccchhHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence 9865332211 11110000 111122344588999999999999999999887753
|
Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A .... |
| >cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-11 Score=118.47 Aligned_cols=97 Identities=15% Similarity=0.237 Sum_probs=67.2
Q ss_pred hccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhh
Q 008820 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
...+++.|||||++ . ...++.++|+|||||++|||++ |. ||.......+
T Consensus 180 ~~~~~~~y~~pE~~------~---------~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~~~~-------------- 230 (288)
T cd05061 180 KGLLPVRWMAPESL------K---------DGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQV-------------- 230 (288)
T ss_pred CCcccccccCHHHh------c---------cCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCHHHH--------------
Confidence 34567889999998 2 2556789999999999999999 67 9965332211
Q ss_pred hhhhHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 112 LGMYMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
........ ..........+.+++.+||+.+|.+||++.++.+.+....
T Consensus 231 -------~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~ 279 (288)
T cd05061 231 -------LKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDL 279 (288)
T ss_pred -------HHHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhc
Confidence 01000000 0001122346999999999999999999999988877653
|
Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-08 Score=92.54 Aligned_cols=235 Identities=15% Similarity=0.121 Sum_probs=140.3
Q ss_pred CccceEEEEEc---CCEEEEEeCCCcEEEEeCCCC----eE----------EEEEeCCCCCeEEEEEecCCCCEEEEEcC
Q 008820 251 HRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDF----SH----------VHTFKGHDHKVMAVVYVDEDQPLCISGDS 313 (552)
Q Consensus 251 H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~~----~~----------~~~~~~h~~~v~~v~~~~~~~~~l~s~~~ 313 (552)
-+..|+|++|- ++.|+.|+..| |.+|..... +. +...++| .+|+++.|.+++..++-++-.
T Consensus 139 sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~g 216 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFG 216 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccC
Confidence 35679999997 77888888765 999986421 11 1122345 789999999987766555556
Q ss_pred CCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-C
Q 008820 314 GGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-N 392 (552)
Q Consensus 314 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~ 392 (552)
|..|.+||.+++........-. .......++||+.+|++++-|+..++|+..+.........-.+.|...+|+ .
T Consensus 217 sssi~iWdpdtg~~~pL~~~gl-----gg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspc 291 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKIPLIPKGL-----GGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPC 291 (445)
T ss_pred cceEEEEcCCCCCcccccccCC-----CceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCC
Confidence 8999999999876554441111 223467899999999999999999999654432222222234588999998 3
Q ss_pred C--EEEEEeCCCcEEEEECCCCce--e-------EEEec-------CCC----CceEEEEEEcCCCCEEEEEECCC----
Q 008820 393 G--VLYSGSRDGTIRLWSLSDHSL--L-------TVLEE-------DSS----GAVSSVLSLTAVQHTLVVSHESG---- 446 (552)
Q Consensus 393 ~--~l~s~~~dg~i~iwd~~~~~~--~-------~~~~~-------~~~----~~~~~~~~~s~~~~~l~~g~~dg---- 446 (552)
+ +|++++..-.++-........ . ..+.. ... +.....+++.|.|.++++.-..+
T Consensus 292 GsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~ 371 (445)
T KOG2139|consen 292 GSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVL 371 (445)
T ss_pred CCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhh
Confidence 3 555555544443322211100 0 00000 000 11223479999999999876543
Q ss_pred ----cEEEEeCCc-ceeee------ecccceEEEEEe---cCCEEEEEeCCCeEEEEecC
Q 008820 447 ----SIKVWRNDK-FMKSM------QTHKGSVFAVFL---EGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 447 ----~i~iwd~~~-~~~~~------~~h~~~v~~v~~---~~~~l~sgs~dg~i~iwd~~ 492 (552)
.|.+||+++ +...+ .+....-.++.+ ++.+|..+=..|.+.-|++.
T Consensus 372 ~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 372 LCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred hhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 355677654 22211 111122333433 55566666566777666653
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.2e-09 Score=105.94 Aligned_cols=211 Identities=9% Similarity=0.114 Sum_probs=125.9
Q ss_pred CcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCC--CcEEEEeCCCCCCCccccccccCCCceeeeEEEEe
Q 008820 272 KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSG--GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALT 349 (552)
Q Consensus 272 g~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (552)
..|.++|.. +.....+..+...+.+.+|+|++..++++...+ ..|.+||+.++... .+...... .....++
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~-----~~~~~~S 248 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGS-----NSAPAWS 248 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCC-----ccceEEC
Confidence 457777764 455555667788899999999887665554333 45999999876432 22211111 1234789
Q ss_pred eCCCEEE-EeeCCCcEEEEE--CCCCceeEEecCCCCCeEEEEEe-CC-EEEEEe-CCCcEEEEEC--CCCceeEEEecC
Q 008820 350 TSGRYLY-TGSGDRTIKAWS--LLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGS-RDGTIRLWSL--SDHSLLTVLEED 421 (552)
Q Consensus 350 ~~~~~l~-sgs~dg~i~iwd--~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~-~dg~i~iwd~--~~~~~~~~~~~~ 421 (552)
|+|+.|+ +.+.+|...+|. +.++. ...+..+........|+ ++ .++..+ .+|...+|.+ .+++.. .+...
T Consensus 249 PDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~ 326 (427)
T PRK02889 249 PDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFT 326 (427)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecC
Confidence 9998765 567777766664 44444 45555555556778898 44 555544 3566666654 444432 22222
Q ss_pred CCCceEEEEEEcCCCCEEEEEECCC---cEEEEeCCc-ceeeeecc-cceEEEEEecCCEEEEEeCCC---eEEEEecCC
Q 008820 422 SSGAVSSVLSLTAVQHTLVVSHESG---SIKVWRNDK-FMKSMQTH-KGSVFAVFLEGKWLFTGGWDK---TVSVQELAG 493 (552)
Q Consensus 422 ~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd~~~-~~~~~~~h-~~~v~~v~~~~~~l~sgs~dg---~i~iwd~~~ 493 (552)
. ..... ..|+|+|++++..+.++ .|++||... ....+..+ ...-.++++||+.|+..+.++ .+++.++.+
T Consensus 327 g-~~~~~-~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g 404 (427)
T PRK02889 327 G-SYNTS-PRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG 404 (427)
T ss_pred C-CCcCc-eEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECCC
Confidence 1 11122 58999999998777654 589999653 22233221 122234556999888877554 355556643
|
|
| >cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5 | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-11 Score=117.75 Aligned_cols=113 Identities=13% Similarity=0.144 Sum_probs=62.9
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc-hHHHhh-hhhh---ccccCCC
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF-TKELID-YIRC---VSTKASD 106 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf-~~~~~~-~~~~---~~~~~~~ 106 (552)
....||+.|+|||++ .| ...++.++|||||||++|||+||. || ...... .+.. .......
T Consensus 157 ~~~~~~~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~ 222 (284)
T cd07839 157 SAEVVTLWYRPPDVL------FG--------AKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTE 222 (284)
T ss_pred CCCccccCCcChHHH------hC--------CcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHHHhCCCCh
Confidence 445789999999998 22 123468999999999999999999 86 222211 1100 0011011
Q ss_pred chhhhhhhhHHHHHHHHHHH-----hhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 107 DNIACLGMYMAWMEKVTYLL-----ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..|......... ...+..+ .+..+....++.+++.+||+.+|.+||++.++..
T Consensus 223 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~ 280 (284)
T cd07839 223 ESWPGVSKLPDY-KPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQ 280 (284)
T ss_pred HHhHHhhhcccc-cccCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhc
Confidence 011000000000 0000000 0111123445889999999999999999887654
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also |
| >cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5 | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.3e-12 Score=120.20 Aligned_cols=96 Identities=15% Similarity=0.229 Sum_probs=64.2
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
....||+.|+|||++ ....++.++|||||||++|||++|+ ||........
T Consensus 176 ~~~~~~~~y~aPE~~---------------~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~-------------- 226 (292)
T cd06658 176 KSLVGTPYWMAPEVI---------------SRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQA-------------- 226 (292)
T ss_pred ceeecCccccCHHHH---------------ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH--------------
Confidence 456799999999998 2345678999999999999999999 9965332210
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
.......... ...........+.+++.+|+..+|.+||++.++.+.
T Consensus 227 ---~~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~ 272 (292)
T cd06658 227 ---MRRIRDNLPP-RVKDSHKVSSVLRGFLDLMLVREPSQRATAQELLQH 272 (292)
T ss_pred ---HHHHHhcCCC-ccccccccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence 0000000000 000001123348899999999999999998877653
|
Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express |
| >cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin | Back alignment and domain information |
|---|
Probab=99.18 E-value=8e-12 Score=120.07 Aligned_cols=101 Identities=13% Similarity=0.113 Sum_probs=64.0
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
....||+.|||||++..... ....++.++|||||||++|||++|+ ||.......... ...
T Consensus 182 ~~~~~~~~y~aPE~~~~~~~----------~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~~~~~-~~~-------- 242 (286)
T cd06638 182 NTSVGTPFWMAPEVIACEQQ----------LDSTYDARCDVWSLGITAIELGDGDPPLADLHPMRALF-KIP-------- 242 (286)
T ss_pred ccccCCCcccChhhhchhhh----------ccccccchhhhhhHHHHHHHHhcCCCCCCCCchhHHHh-hcc--------
Confidence 34579999999999832110 1234678999999999999999999 996533221000 000
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
.. ..............+.+++.+||+.+|++||++.++.+.
T Consensus 243 --------~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~ 283 (286)
T cd06638 243 --------RN-PPPTLHQPELWSNEFNDFIRKCLTKDYEKRPTVSDLLQH 283 (286)
T ss_pred --------cc-CCCcccCCCCcCHHHHHHHHHHccCCcccCCCHHHHhhc
Confidence 00 000000001122358899999999999999998887653
|
Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear |
| >cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-11 Score=116.66 Aligned_cols=97 Identities=15% Similarity=0.111 Sum_probs=66.6
Q ss_pred hccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC--CchHHHhhhhhhccccCCCchhhh
Q 008820 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE--QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~--pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
...+++.|||||++ . ...++.++|||||||++|||++|. ||.......+
T Consensus 161 ~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~-------------- 211 (262)
T cd05058 161 GAKLPVKWMALESL------Q---------TQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSFDI-------------- 211 (262)
T ss_pred cCcCCccccChhHh------c---------cCccchHHHHHHHHHHHHHHHcCCCCCCCCCCHHHH--------------
Confidence 55678899999998 2 245678999999999999999965 6654322211
Q ss_pred hhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 112 LGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 112 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
...+... ........+..+.+++.+|+..+|++||++.++...+.+++
T Consensus 212 -------~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~~l~~~~ 260 (262)
T cd05058 212 -------TVYLLQGRRLLQPEYCPDPLYEVMLSCWHPKPEMRPTFSELVSRIEQIF 260 (262)
T ss_pred -------HHHHhcCCCCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHh
Confidence 0000000 00001112335889999999999999999999999887764
|
Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca |
| >cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.8e-12 Score=117.33 Aligned_cols=93 Identities=17% Similarity=0.241 Sum_probs=63.9
Q ss_pred hccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhh
Q 008820 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
...+++.|||||++ . ...++.++|+|||||+||||++ |+ ||.......+.
T Consensus 160 ~~~~~~~y~aPE~~------~---------~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~~~~------------- 211 (256)
T cd05114 160 GAKFPVKWSPPEVF------N---------FSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEVV------------- 211 (256)
T ss_pred CCCCchhhCChhhc------c---------cCccchhhhhHHHHHHHHHHHcCCCCCCCCCCHHHHH-------------
Confidence 34567789999998 2 2456689999999999999999 89 99664433110
Q ss_pred hhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHH
Q 008820 112 LGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (552)
Q Consensus 112 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l 162 (552)
..+... ...........+.+++.+|++.+|.+||++.++.+.+
T Consensus 212 --------~~i~~~~~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~~l~~~l 255 (256)
T cd05114 212 --------EMISRGFRLYRPKLASMTVYEVMYSCWHEKPEGRPTFAELLRAI 255 (256)
T ss_pred --------HHHHCCCCCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence 000000 0001112334588999999999999999999887653
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h |
| >cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-11 Score=116.23 Aligned_cols=95 Identities=14% Similarity=0.119 Sum_probs=65.5
Q ss_pred cccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhhhh
Q 008820 36 LESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIACLG 113 (552)
Q Consensus 36 ~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~~~ 113 (552)
.+++.|||||++ . ...++.++|||||||++|||++ |+ ||.......+.
T Consensus 159 ~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~--------------- 208 (257)
T cd05115 159 KWPLKWYAPECI------N---------FRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPEVM--------------- 208 (257)
T ss_pred CCCcccCCHHHH------c---------cCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHHHHH---------------
Confidence 346899999998 2 2456789999999999999996 99 99653322110
Q ss_pred hhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 114 MYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
...... ...........++.+++.+|++.+|++||+..++.+.+...
T Consensus 209 --~~~~~~---~~~~~~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~ 255 (257)
T cd05115 209 --SFIEQG---KRLDCPAECPPEMYALMKDCWIYKWEDRPNFAKVEERMRTY 255 (257)
T ss_pred --HHHHCC---CCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence 000000 00011122345689999999999999999999998877653
|
Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho |
| >KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.8e-12 Score=113.62 Aligned_cols=111 Identities=18% Similarity=0.137 Sum_probs=77.2
Q ss_pred hhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCc
Q 008820 29 GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDD 107 (552)
Q Consensus 29 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~ 107 (552)
++.+.+-+||-.|||||+..- +-+ ....++.+||+||||||||-||+|+ ||.+.--. -=
T Consensus 240 tP~L~tPvGSAEfMAPEVVd~-fv~---------qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~----------dC 299 (463)
T KOG0607|consen 240 TPELLTPVGSAEFMAPEVVDV-FVD---------QATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGA----------DC 299 (463)
T ss_pred CccccCcccchhhcchhHHhh-hcc---------ccccccccccHHHHHHHHHHHHhCCCCccCccCC----------cC
Confidence 356777899999999999832 221 2356788999999999999999999 99552111 00
Q ss_pred hhhhh--------hhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHH
Q 008820 108 NIACL--------GMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVW 159 (552)
Q Consensus 108 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~ 159 (552)
+|..- .....+.+.-.+.|+..|...+.+.++++..+|-.++.+|-.+..+.
T Consensus 300 GWdrGe~Cr~CQ~~LFesIQEGkYeFPdkdWahIS~eakdlisnLlvrda~~rlsa~~vl 359 (463)
T KOG0607|consen 300 GWDRGEVCRVCQNKLFESIQEGKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSAAQVL 359 (463)
T ss_pred CccCCCccHHHHHHHHHHHhccCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhcc
Confidence 22111 11222333345667777777888899999999999999998766543
|
|
| >cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-11 Score=117.44 Aligned_cols=93 Identities=17% Similarity=0.262 Sum_probs=63.4
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
..+.|++.|+|||++ . ...++.++|+|||||++|+|++|+ ||........
T Consensus 170 ~~~~~~~~y~~pe~~------~---------~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~-------------- 220 (267)
T cd06628 170 PSLQGSVFWMAPEVV------K---------QTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQLQA-------------- 220 (267)
T ss_pred cccCCCcCccChhHh------c---------cCCCCchhhhHHHHHHHHHHhhCCCCCCCccHHHH--------------
Confidence 346799999999998 2 245678999999999999999999 9965322100
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
...... .............+.+++.+||+.+|.+||+..++.+
T Consensus 221 ---~~~~~~---~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 263 (267)
T cd06628 221 ---IFKIGE---NASPEIPSNISSEAIDFLEKTFEIDHNKRPTAAELLK 263 (267)
T ss_pred ---HHHHhc---cCCCcCCcccCHHHHHHHHHHccCCchhCcCHHHHhh
Confidence 000000 0000111123345889999999999999999877654
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate |
| >cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2 | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-11 Score=116.68 Aligned_cols=94 Identities=21% Similarity=0.295 Sum_probs=65.6
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....|++.|||||++ . ...++.++|+|||||++|+|++|+ ||.......+.
T Consensus 167 ~~~~~~~~~~~~pE~~------~---------~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~------------ 219 (265)
T cd08217 167 AKTYVGTPYYMSPEQL------N---------HMSYDEKSDIWSLGCLIYELCALSPPFTARNQLQLA------------ 219 (265)
T ss_pred ccccccCCCccChhhh------c---------CCCCCchhHHHHHHHHHHHHHHCCCcccCcCHHHHH------------
Confidence 4557899999999998 2 244678999999999999999999 99764433111
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
+...... ...........+.+++.+||+.+|.+||++.++.+
T Consensus 220 -----~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~ 261 (265)
T cd08217 220 -----SKIKEGK---FRRIPYRYSSELNEVIKSMLNVDPDKRPSTEELLQ 261 (265)
T ss_pred -----HHHhcCC---CCCCccccCHHHHHHHHHHccCCcccCCCHHHHhh
Confidence 0000000 00011112345889999999999999999988765
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi |
| >cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-11 Score=117.10 Aligned_cols=98 Identities=15% Similarity=0.276 Sum_probs=63.3
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....|++.|+|||++. + ....++.++|+|||||+||+|++|+ ||.........
T Consensus 166 ~~~~~~~~~~~aPE~~~------~-------~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~------------ 220 (268)
T cd06624 166 TETFTGTLQYMAPEVID------K-------GPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAA------------ 220 (268)
T ss_pred cccCCCCccccChhhhc------c-------ccccCCchhhhHHHHHHHHHHHhCCCCCccccChhhh------------
Confidence 44567999999999982 1 1123568999999999999999999 99542211000
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+ ....... ..........++.+++.+||+.+|.+||++.++..
T Consensus 221 ~~--~~~~~~~----~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~ 264 (268)
T cd06624 221 MF--KVGMFKI----HPEIPESLSAEAKNFILRCFEPDPDKRASAHDLLQ 264 (268)
T ss_pred Hh--hhhhhcc----CCCCCcccCHHHHHHHHHHcCCCchhCCCHHHHHh
Confidence 00 0000000 00011112345889999999999999999987654
|
Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina |
| >cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.9e-12 Score=121.29 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=66.1
Q ss_pred hccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhhh
Q 008820 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIACL 112 (552)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~ 112 (552)
...|++.|+|||++ .....+.++|+|||||+||||++|+ ||.+.....+.
T Consensus 175 ~~~~~~~y~aPE~~---------------~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~~~~-------------- 225 (305)
T cd05609 175 QVCGTPEYIAPEVI---------------LRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELF-------------- 225 (305)
T ss_pred CCccCccccCchhc---------------cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH--------------
Confidence 46789999999998 2244678999999999999999999 99754333110
Q ss_pred hhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHh
Q 008820 113 GMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (552)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~ 164 (552)
..........+.. ......++.+++.+||+.+|++||+...+.+.+..
T Consensus 226 ---~~~~~~~~~~~~~-~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~ 273 (305)
T cd05609 226 ---GQVISDDIEWPEG-DEALPADAQDLISRLLRQNPLERLGTGGAFEVKQH 273 (305)
T ss_pred ---HHHHhcccCCCCc-cccCCHHHHHHHHHHhccChhhccCccCHHHHHhC
Confidence 0000000000110 01234458999999999999999998766665554
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a |
| >cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-11 Score=120.83 Aligned_cols=114 Identities=14% Similarity=0.198 Sum_probs=66.6
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhh----hhccccCCCc
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYI----RCVSTKASDD 107 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~----~~~~~~~~~~ 107 (552)
+...||+.|+|||++ .+ ...++.++|||||||+||||++|+ ||.+.+.... ........+.
T Consensus 184 ~~~~~~~~y~aPE~~------~~--------~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (311)
T cd07866 184 TNLVVTRWYRPPELL------LG--------ERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIFKLCGTPTEE 249 (311)
T ss_pred ccceeccCcCChHHh------hC--------CCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChh
Confidence 456889999999998 22 234678999999999999999999 9965332211 1011111111
Q ss_pred hhhhhhhhHHHH-----HHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 108 NIACLGMYMAWM-----EKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 108 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.|..+....... ...+.............+.+++.+||+.+|.+||++.++..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~ 307 (311)
T cd07866 250 TWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALE 307 (311)
T ss_pred hchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhc
Confidence 111111000000 00000011111223356889999999999999999876543
|
Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic |
| >PHA03390 pk1 serine/threonine-protein kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.6e-12 Score=118.45 Aligned_cols=94 Identities=14% Similarity=0.181 Sum_probs=62.7
Q ss_pred hccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhhh
Q 008820 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIACL 112 (552)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~ 112 (552)
...||+.|||||++ . ...++.++|+|||||++|||++|+ ||.......+.
T Consensus 165 ~~~~~~~y~aPE~~------~---------~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~~-------------- 215 (267)
T PHA03390 165 CYDGTLDYFSPEKI------K---------GHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEELD-------------- 215 (267)
T ss_pred cCCCCCcccChhhh------c---------CCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchhh--------------
Confidence 45799999999998 2 245668999999999999999999 99643221000
Q ss_pred hhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcch-hhHH
Q 008820 113 GMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL-TNVW 159 (552)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~-~~~~ 159 (552)
...+.... ...........+.+.+++.+||+.+|.+||+. .++.
T Consensus 216 --~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~l 260 (267)
T PHA03390 216 --LESLLKRQ-QKKLPFIKNVSKNANDFVQSMLKYNINYRLTNYNEII 260 (267)
T ss_pred --HHHHHHhh-cccCCcccccCHHHHHHHHHHhccChhhCCchHHHHh
Confidence 01111111 11111222345568999999999999999974 5544
|
|
| >cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2 | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-11 Score=116.94 Aligned_cols=94 Identities=16% Similarity=0.204 Sum_probs=64.3
Q ss_pred ccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhhhhh
Q 008820 37 ESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIACLGM 114 (552)
Q Consensus 37 g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (552)
+++.|||||++ ....++.++|||||||++|||++ |+ ||.......+.
T Consensus 172 ~~~~y~~PE~~---------------~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~~~~~---------------- 220 (268)
T cd05063 172 IPIRWTAPEAI---------------AYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSNHEVM---------------- 220 (268)
T ss_pred cCceecCHHHh---------------hcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCHHHHH----------------
Confidence 45689999998 22456789999999999999998 99 99653322110
Q ss_pred hHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 115 YMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
..+... ...+........+.+++.+|++.+|++||++.++.+.+.++
T Consensus 221 -~~i~~~---~~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~ 267 (268)
T cd05063 221 -KAINDG---FRLPAPMDCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKL 267 (268)
T ss_pred -HHHhcC---CCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence 000000 00001111234588999999999999999999998887664
|
Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored |
| >KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-11 Score=112.27 Aligned_cols=95 Identities=22% Similarity=0.330 Sum_probs=64.7
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
+|.|+|||.|+|||++ +| ..++...|.|+|||++|||+.|+ ||+---.. +|+.-.
T Consensus 408 tstfcgtpnyiapeil------rg---------eeygfsvdwwalgvlmfemmagrspfdivgm~---------n~d~nt 463 (593)
T KOG0695|consen 408 TSTFCGTPNYIAPEIL------RG---------EEYGFSVDWWALGVLMFEMMAGRSPFDIVGMD---------NPDMNT 463 (593)
T ss_pred cccccCCCcccchhhh------cc---------cccCceehHHHHHHHHHHHHcCCCCcceecCC---------Ccccch
Confidence 7999999999999999 55 66778999999999999999999 99642111 110000
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcc
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~ 154 (552)
.-...|.+.++...+|.+ ..+....++..-|.++|.+|-.
T Consensus 464 edylfqvilekqiriprs----lsvkas~vlkgflnkdp~erlg 503 (593)
T KOG0695|consen 464 EDYLFQVILEKQIRIPRS----LSVKASHVLKGFLNKDPKERLG 503 (593)
T ss_pred hHHHHHHHhhhcccccce----eehhhHHHHHHhhcCCcHHhcC
Confidence 111234444433333322 3445667888899999999754
|
|
| >cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.3e-12 Score=119.60 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=63.1
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhh-hhccccCCCchh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYI-RCVSTKASDDNI 109 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~-~~~~~~~~~~~~ 109 (552)
...+.|++.|+|||++ .+ ......+.++|+|||||+||+|+||+ ||........ ..+......
T Consensus 158 ~~~~~~~~~y~~Pe~~------~~------~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~~~~~~~~~~~~--- 222 (262)
T cd06613 158 RKSFIGTPYWMAPEVA------AV------ERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMRALFLISKSNFP--- 222 (262)
T ss_pred cccccCCccccCchhh------cc------cccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCC---
Confidence 3456899999999998 22 00125678999999999999999999 9965332210 000000000
Q ss_pred hhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 110 ACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
+... . .......++.+++.+|+..+|..||+..++..
T Consensus 223 -----~~~~-~--------~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~ 259 (262)
T cd06613 223 -----PPKL-K--------DKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQ 259 (262)
T ss_pred -----Cccc-c--------chhhhhHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 0000 0 00011234889999999999999999877654
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ |
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-11 Score=128.50 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=68.8
Q ss_pred hhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchh
Q 008820 31 FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNI 109 (552)
Q Consensus 31 ~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~ 109 (552)
-.+..+|||.|+|||++..... ..+.+++.||.|||||++||||.|. ||.++++.
T Consensus 232 ~s~~aVGTPDYISPEvLqs~~~----------~~g~yG~ecDwWSlGV~~YEMlyG~TPFYadslv-------------- 287 (1317)
T KOG0612|consen 232 RSSVAVGTPDYISPEVLQSQGD----------GKGEYGRECDWWSLGVFMYEMLYGETPFYADSLV-------------- 287 (1317)
T ss_pred EeccccCCCCccCHHHHHhhcC----------CccccCCccchhhhHHHHHHHHcCCCcchHHHHH--------------
Confidence 3677899999999999954322 2468899999999999999999999 99888766
Q ss_pred hhhhhhHHHHHH--HHHHHhhhhcCccccHHHHHHhhcccCCCCCcc---hhhHHH
Q 008820 110 ACLGMYMAWMEK--VTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL---LTNVWK 160 (552)
Q Consensus 110 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~---~~~~~~ 160 (552)
.+|..+... ...+| .....+.+.+++|.+++. +|+.|-. ..++..
T Consensus 288 ---eTY~KIm~hk~~l~FP--~~~~VSeeakdLI~~ll~-~~e~RLgrngiedik~ 337 (1317)
T KOG0612|consen 288 ---ETYGKIMNHKESLSFP--DETDVSEEAKDLIEALLC-DREVRLGRNGIEDIKN 337 (1317)
T ss_pred ---HHHHHHhchhhhcCCC--cccccCHHHHHHHHHHhc-ChhhhcccccHHHHHh
Confidence 223322222 12222 112245568899988776 6666655 555544
|
|
| >cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-11 Score=120.72 Aligned_cols=92 Identities=21% Similarity=0.253 Sum_probs=61.8
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
..+.||+.|||||++ .+ ..++.++|||||||++|+|++|+ ||........
T Consensus 190 ~~~~g~~~y~aPE~~------~~---------~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~-------------- 240 (316)
T cd05574 190 NSFVGTEEYIAPEVI------SG---------DGHGSAVDWWTLGILLYEMLYGTTPFKGSNRDET-------------- 240 (316)
T ss_pred CCCcCccCCcCHHHH------cC---------CCCCchHHHHHHHHHHHHHhhCCCCCCCCchHHH--------------
Confidence 357899999999999 22 45678999999999999999999 9965432210
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhH
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNV 158 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~ 158 (552)
+......... ..........+.+++.+||+.+|++||+....
T Consensus 241 ---~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~ 282 (316)
T cd05574 241 ---FSNILKKEVT--FPGSPPVSSSARDLIRKLLVKDPSKRLGSKRG 282 (316)
T ss_pred ---HHHHhcCCcc--CCCccccCHHHHHHHHHHccCCHhHCCCchhh
Confidence 0000000000 00001123459999999999999999994433
|
Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin |
| >cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-11 Score=115.61 Aligned_cols=91 Identities=19% Similarity=0.268 Sum_probs=62.6
Q ss_pred ccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhhhhh
Q 008820 37 ESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIACLGM 114 (552)
Q Consensus 37 g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (552)
++..|+|||++ . ...++.++|+|||||++|||+| |. ||.......+.
T Consensus 157 ~~~~y~~PE~~------~---------~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~~~~---------------- 205 (251)
T cd05041 157 IPIKWTAPEAL------N---------YGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQQTR---------------- 205 (251)
T ss_pred ceeccCChHhh------c---------cCCCCcchhHHHHHHHHHHHHhccCCCCccCCHHHHH----------------
Confidence 36679999998 2 2456789999999999999999 77 98653322110
Q ss_pred hHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHH
Q 008820 115 YMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (552)
Q Consensus 115 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~ 163 (552)
...... ...........+.+++.+|+..+|.+||++.++.+.+.
T Consensus 206 -----~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~ell~~l~ 250 (251)
T cd05041 206 -----ERIESGYRMPAPQLCPEEIYRLMLQCWAYDPENRPSFSEIYNELQ 250 (251)
T ss_pred -----HHHhcCCCCCCCccCCHHHHHHHHHHhccChhhCcCHHHHHHHhh
Confidence 000000 00011123345899999999999999999999887653
|
Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k |
| >cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-11 Score=118.60 Aligned_cols=102 Identities=18% Similarity=0.218 Sum_probs=64.2
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
....|++.|+|||++...... ....++.++|+|||||++|+|++|+ ||........
T Consensus 159 ~~~~~~~~y~aPE~~~~~~~~---------~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~-------------- 215 (286)
T cd06622 159 KTNIGCQSYMAPERIKSGGPN---------QNPTYTVQSDVWSLGLSILEMALGRYPYPPETYANI-------------- 215 (286)
T ss_pred ccCCCccCccCcchhcCCCCC---------ccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhhH--------------
Confidence 345689999999998211100 1234567999999999999999999 9965332210
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
...........+.........++.+++.+||+.+|.+||+..++..
T Consensus 216 ---~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~ 261 (286)
T cd06622 216 ---FAQLSAIVDGDPPTLPSGYSDDAQDFVAKCLNKIPNRRPTYAQLLE 261 (286)
T ss_pred ---HHHHHHHhhcCCCCCCcccCHHHHHHHHHHcccCcccCCCHHHHhc
Confidence 0000000000011111123345889999999999999999887665
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include |
| >cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-11 Score=117.58 Aligned_cols=98 Identities=18% Similarity=0.231 Sum_probs=64.9
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
..+.|++.|+|||++ .+ ..++.++||||||++||+|++|. ||.......+.
T Consensus 151 ~~~~~~~~y~~pe~~------~~---------~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~------------- 202 (260)
T cd05611 151 KKFVGTPDYLAPETI------LG---------VGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDAVF------------- 202 (260)
T ss_pred ccCCCCcCccChhhh------cC---------CCCcchhhhHHHHHHHHHHHHCCCCCCCCCHHHHH-------------
Confidence 356799999999998 22 33578999999999999999999 99654333110
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHH
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l 162 (552)
..........+..........+.+++.+||+.+|+.||++..+.+.+
T Consensus 203 ----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l 249 (260)
T cd05611 203 ----DNILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEIK 249 (260)
T ss_pred ----HHHHhcccCCCCcccccCCHHHHHHHHHHccCCHHHccCCCcHHHHH
Confidence 00000000001111112344589999999999999999876555543
|
Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.8e-09 Score=100.89 Aligned_cols=187 Identities=17% Similarity=0.255 Sum_probs=126.5
Q ss_pred EEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeE
Q 008820 297 AVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSC 376 (552)
Q Consensus 297 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~ 376 (552)
+++++.....+ +.++....|+-++++.+....++..-... ..+..+++-..+|++|+.+|.|..||.++.+.+.
T Consensus 138 Dm~y~~~scDl-y~~gsg~evYRlNLEqGrfL~P~~~~~~~-----lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 138 DMKYHKPSCDL-YLVGSGSEVYRLNLEQGRFLNPFETDSGE-----LNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVG 211 (703)
T ss_pred cccccCCCccE-EEeecCcceEEEEcccccccccccccccc-----ceeeeecCccceEEecccCceEEEecchhhhhhe
Confidence 44444333323 44555567888888877666665543322 1244566666799999999999999999877666
Q ss_pred Eec------CCCC-----CeEEEEEeC-C-EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCC--CCEEEE
Q 008820 377 TMS------GHKS-----AVSTLAVCN-G-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAV--QHTLVV 441 (552)
Q Consensus 377 ~~~------~h~~-----~v~~l~~~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~ 441 (552)
++. .|.+ .|+++.|++ + .+++|..+|.+.|||+++.+++..-.+...-.+.. +.|.+. ++.+++
T Consensus 212 ~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~-l~~~~~~~q~~v~S 290 (703)
T KOG2321|consen 212 TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKK-LDWQDTDQQNKVVS 290 (703)
T ss_pred eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceee-ecccccCCCceEEe
Confidence 553 2333 499999995 5 89999999999999999999887666554444444 455443 344554
Q ss_pred EECCCcEEEEe--CCcceeeeecccceEEEEE--ecCCEEEEEeCCCeEEEEecC
Q 008820 442 SHESGSIKVWR--NDKFMKSMQTHKGSVFAVF--LEGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 442 g~~dg~i~iwd--~~~~~~~~~~h~~~v~~v~--~~~~~l~sgs~dg~i~iwd~~ 492 (552)
.....++||| .++....+... ..+..++ +++.+++++-.++.+..|=+.
T Consensus 291 -~Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 291 -MDKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred -cchHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 4566899998 45555555432 3355555 488899999988888777554
|
|
| >cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2 | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-11 Score=120.29 Aligned_cols=100 Identities=17% Similarity=0.223 Sum_probs=67.5
Q ss_pred hccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhh
Q 008820 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
...|++.|||||++ . ...++.++|||||||+||+|++ |. ||.........
T Consensus 240 ~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~------------- 291 (343)
T cd05103 240 DARLPLKWMAPETI------F---------DRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEF------------- 291 (343)
T ss_pred CCCCCcceECcHHh------c---------CCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccHHH-------------
Confidence 45567899999998 2 2456789999999999999997 88 99653211000
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhhc
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~~ 167 (552)
........ .........+++.+++.+|++.+|.+||++.++.+.+..+.+
T Consensus 292 ---~~~~~~~~---~~~~~~~~~~~~~~~~~~cl~~~p~~Rps~~eil~~l~~~~~ 341 (343)
T cd05103 292 ---CRRLKEGT---RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 341 (343)
T ss_pred ---HHHHhccC---CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 00000000 000001123358899999999999999999999999888763
|
Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp |
| >cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2 | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-11 Score=117.55 Aligned_cols=110 Identities=15% Similarity=0.231 Sum_probs=67.2
Q ss_pred ccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhhhh
Q 008820 35 FLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIACLG 113 (552)
Q Consensus 35 ~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~~ 113 (552)
..+++.|||||++ . ...+++++|||||||++|||+||. ||..........+..... .+.
T Consensus 170 ~~~~~~~~~PE~~------~---------~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~--~~~--- 229 (283)
T cd05080 170 GDSPVFWYAVECL------K---------ENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQG--QMT--- 229 (283)
T ss_pred CCCCceeeCHhHh------c---------ccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhccccc--ccc---
Confidence 3467789999998 2 245678999999999999999999 985432110000000000 000
Q ss_pred hhHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 114 MYMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 114 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
...+........ .+.....+.++.+++.+|++.+|++||++.++.+.+..+
T Consensus 230 -~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~ 281 (283)
T cd05080 230 -VVRLIELLERGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEM 281 (283)
T ss_pred -hhhhhhhhhcCCCCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHh
Confidence 000000000000 001122345699999999999999999999999887764
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign |
| >cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4 | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-11 Score=118.45 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=75.9
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
+|+. |+++.+.............+++.|||||++ . ...++.++|||||||++|||++ |+ ||
T Consensus 148 ~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~------~---------~~~~~~~~DiwslG~~l~el~t~g~~p~ 212 (303)
T cd05110 148 VKITDFGLARLLEGDEKEYNADGGKMPIKWMALECI------H---------YRKFTHQSDVWSYGVTIWELMTFGGKPY 212 (303)
T ss_pred eEEccccccccccCcccccccCCCccccccCCHHHh------c---------cCCCChHHHHHHHHHHHHHHHhCCCCCC
Confidence 4555 556555443322223345568899999998 2 2456789999999999999997 88 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
.......+. .+...... ..........+.+++.+|+..+|++||++.++.+.+..+.
T Consensus 213 ~~~~~~~~~------------------~~~~~~~~--~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~ 269 (303)
T cd05110 213 DGIPTREIP------------------DLLEKGER--LPQPPICTIDVYMVMVKCWMIDADSRPKFKELAAEFSRMA 269 (303)
T ss_pred CCCCHHHHH------------------HHHHCCCC--CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 653222110 00000000 0001122345889999999999999999999988877754
|
Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.1e-10 Score=113.59 Aligned_cols=187 Identities=17% Similarity=0.230 Sum_probs=135.6
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCC
Q 008820 304 DQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKS 383 (552)
Q Consensus 304 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~ 383 (552)
.+..++.++.+..+.+||.........+..-... ......+..++++.-++++|+.-+.|.+|+....+....+.+|.+
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~-~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG 176 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERC-TLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEG 176 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceE-EEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCC
Confidence 3446788888899999998754322222111100 001122334455555999999999999999974444446899999
Q ss_pred CeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeC-Ccceeee
Q 008820 384 AVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN-DKFMKSM 460 (552)
Q Consensus 384 ~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~-~~~~~~~ 460 (552)
.|.++.++ +.++++.|+|.++|+|++.+.+........|...+.. +++.|+ .+++++.|.+.++|+. .+....+
T Consensus 177 ~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~-~~~~~n--~i~t~gedctcrvW~~~~~~l~~y 253 (967)
T KOG0974|consen 177 SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA-CCFLPN--RIITVGEDCTCRVWGVNGTQLEVY 253 (967)
T ss_pred ceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEE-EEeccc--eeEEeccceEEEEEecccceehhh
Confidence 99999998 4499999999999999999988776444444566666 467776 8999999999999973 3455577
Q ss_pred ecccc-eEEEEEe--cCCEEEEEeCCCeEEEEecCCC
Q 008820 461 QTHKG-SVFAVFL--EGKWLFTGGWDKTVSVQELAGD 494 (552)
Q Consensus 461 ~~h~~-~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~ 494 (552)
.+|.. .+..+.. +...++|++.|+.+++||+.+.
T Consensus 254 ~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 254 DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred hhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 77765 4555554 6778899999999999998643
|
|
| >cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5 | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.6e-12 Score=120.39 Aligned_cols=99 Identities=14% Similarity=0.100 Sum_probs=62.8
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhh-hhhhccccCCCchhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELID-YIRCVSTKASDDNIA 110 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~-~~~~~~~~~~~~~~~ 110 (552)
....|++.|||||++... .....+.++|+|||||++|||++|+ ||...... ....+.... +.
T Consensus 164 ~~~~~~~~y~~PE~~~~~------------~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~~~~~~~~~~----~~ 227 (267)
T cd06646 164 KSFIGTPYWMAPEVAAVE------------KNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMSKSN----FQ 227 (267)
T ss_pred CccccCccccCHhHcccc------------cCCCCcchhhHHHHHHHHHHHHhCCCCccccchhhhheeeecCC----CC
Confidence 456799999999998211 1233567899999999999999999 98543211 010000000 00
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
+.. . .........+.+++.+||+.+|++||++.++.+
T Consensus 228 ----~~~--------~-~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~ 264 (267)
T cd06646 228 ----PPK--------L-KDKTKWSSTFHNFVKISLTKNPKKRPTAERLLT 264 (267)
T ss_pred ----CCC--------C-ccccccCHHHHHHHHHHhhCChhhCcCHHHHhc
Confidence 000 0 000112345889999999999999999887654
|
Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated |
| >cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-11 Score=118.19 Aligned_cols=45 Identities=27% Similarity=0.473 Sum_probs=37.0
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchH
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTK 91 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~ 91 (552)
....||+.|||||++ .| ...++.++|||||||+||+|++|+ ||..
T Consensus 173 ~~~~~~~~y~aPE~~------~~--------~~~~~~~~Dv~slG~~l~~l~~~~~~~~~ 218 (316)
T cd07842 173 DPVVVTIWYRAPELL------LG--------ARHYTKAIDIWAIGCIFAELLTLEPIFKG 218 (316)
T ss_pred CCccccccccCHHHH------hC--------CCCCCcHHHHHHHHHHHHHHHhcCCCCcC
Confidence 456789999999998 22 133568999999999999999999 9964
|
Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-08 Score=98.99 Aligned_cols=268 Identities=13% Similarity=0.055 Sum_probs=153.9
Q ss_pred CEE-EEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCce
Q 008820 263 GFL-FSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWR 341 (552)
Q Consensus 263 ~~l-~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 341 (552)
+++ ++-..++.|.+.|..+.+.+.++......-..+.|+|++. ++++++.||.|.++|+.+.+....++.-..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~~v~~i~~G~~----- 79 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDLATGKVVATIKVGGN----- 79 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEETTSSSEEEEEE-SSE-----
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEECCcccEEEEEecCCC-----
Confidence 444 4556789999999999999999986554445567888666 556667899999999998764444433211
Q ss_pred eeeEEEEeeCCCEEEEee-CCCcEEEEECCCCceeEEecCC-------CCCeEEEEEe--CC-EEEEEeCCCcEEEEECC
Q 008820 342 YSGIHALTTSGRYLYTGS-GDRTIKAWSLLDGTLSCTMSGH-------KSAVSTLAVC--NG-VLYSGSRDGTIRLWSLS 410 (552)
Q Consensus 342 ~~~~~~~~~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~~ 410 (552)
..-.+++++|++++++. .++.+.++|.++.++++.+... ...+.++..+ .. ++++--..+.|-+.|..
T Consensus 80 -~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~ 158 (369)
T PF02239_consen 80 -PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS 158 (369)
T ss_dssp -EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred -cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence 12357889999877664 6899999999999999887532 3456677666 23 44444555889888987
Q ss_pred CCceeEEEecCCCCceEEEEEEcCCCCEEEEE-ECCCcEEEEeCCccee--ee----ecccceEE-----------EEEe
Q 008820 411 DHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS-HESGSIKVWRNDKFMK--SM----QTHKGSVF-----------AVFL 472 (552)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg~i~iwd~~~~~~--~~----~~h~~~v~-----------~v~~ 472 (552)
..+.+..-.......... ..++|++++++++ ..++.|-++|..+... .+ ..|..+.. ...-
T Consensus 159 d~~~~~~~~i~~g~~~~D-~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~ 237 (369)
T PF02239_consen 159 DPKNLKVTTIKVGRFPHD-GGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSG 237 (369)
T ss_dssp TSSCEEEEEEE--TTEEE-EEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEB
T ss_pred cccccceeeecccccccc-cccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecc
Confidence 765443322222222333 6899999987765 4567888999664322 11 12333332 2222
Q ss_pred cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEE----eCCCeEEEEEecCCcceeEE
Q 008820 473 EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVG----CADRTVKIALCNRQIPEIFS 545 (552)
Q Consensus 473 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~----s~Dg~v~iw~~~~~~~~~~~ 545 (552)
.+...++.-....+.+||..+.+........+ .. .-+..+|+ ++++. ...+.|.++|.. +.+.+.+
T Consensus 238 ~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G-----~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~-tl~~~~~ 309 (369)
T PF02239_consen 238 LGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQG-----GG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKK-TLKVVKT 309 (369)
T ss_dssp SSSSEEEEEE--TTT-STTTBTSEEEEEE-SS-----SS---EE--TT-SEEEEE-TT-SSHT-EEEEECC-GTEEEE-
T ss_pred ccceecccccCCccccchhhcCeEEEEEECCC-----Cc-ceeecCCCCccEEeeccCCCCCceEEEEECc-CcceeEE
Confidence 33333333333456678888777766655432 22 34455653 36665 456899999987 3333333
|
... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.9e-08 Score=90.91 Aligned_cols=219 Identities=13% Similarity=0.097 Sum_probs=143.4
Q ss_pred CCCcEEEEeCCCCeEEEEEeCC--CCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEE
Q 008820 270 FDKSIHVWSLKDFSHVHTFKGH--DHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHA 347 (552)
Q Consensus 270 ~dg~I~iwd~~~~~~~~~~~~h--~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (552)
.+|+|..||..+|+.+....-- .....+.. .++++ .+++++.++.+..||..+++............. .
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~-~~~~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~-------~ 71 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATA-VPDGG-RVYVASGDGNLYALDAKTGKVLWRFDLPGPISG-------A 71 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETE-EEETT-EEEEEETTSEEEEEETTTSEEEEEEECSSCGGS-------G
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceE-EEeCC-EEEEEcCCCEEEEEECCCCCEEEEeeccccccc-------e
Confidence 3789999999999999988641 12222112 22244 556668999999999988765444333111111 0
Q ss_pred EeeCCCEEEEeeCCCcEEEEECCCCceeEEe-cCCC-----CCeEEEEEeCCEEEEEeCCCcEEEEECCCCceeEEEecC
Q 008820 348 LTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM-SGHK-----SAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEED 421 (552)
Q Consensus 348 ~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-~~h~-----~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 421 (552)
....+..+++++.++.++.+|..+|+.++.. .... .......+.++.++.+..++.|..+|+++|+.+......
T Consensus 72 ~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 72 PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred eeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 2335567777778899999999999999984 3221 112334445789999999999999999999999888764
Q ss_pred CCCce---------EEEEEEcCCCCEEEEEECCCcEEEEeCCcceeeeecccceEEE-EEecCCEEEEEeCCCeEEEEec
Q 008820 422 SSGAV---------SSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFA-VFLEGKWLFTGGWDKTVSVQEL 491 (552)
Q Consensus 422 ~~~~~---------~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~h~~~v~~-v~~~~~~l~sgs~dg~i~iwd~ 491 (552)
..... ... ....++ .++.++.++.+..+|..+....+......+.. ...++..|+.++.++.|..||+
T Consensus 152 ~~~~~~~~~~~~~~~~~-~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 152 EPRGSSPISSFSDINGS-PVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp TT-SS--EEEETTEEEE-EECCTT-EEEEECCTSSEEEEETTTTEEEEEECSS-ECECEECCCTEEEEEETTTEEEEEET
T ss_pred CCCCCcceeeecccccc-eEEECC-EEEEEcCCCeEEEEECCCCCEEEEecCCCccCCceeeCCEEEEEeCCCEEEEEEC
Confidence 32211 121 222234 77777778764444876554334333333444 5568888998889999999999
Q ss_pred CCCeeeee
Q 008820 492 AGDEFEED 499 (552)
Q Consensus 492 ~~~~~~~~ 499 (552)
++++....
T Consensus 230 ~tG~~~W~ 237 (238)
T PF13360_consen 230 KTGKVVWQ 237 (238)
T ss_dssp TTTEEEEE
T ss_pred CCCCEEeE
Confidence 99977653
|
... |
| >cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9 | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-11 Score=115.33 Aligned_cols=94 Identities=20% Similarity=0.317 Sum_probs=65.3
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....||+.|+|||++ .+ ...+.++|+|||||++|||++|+ ||.......+.
T Consensus 158 ~~~~~~~~~y~ape~~------~~---------~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~------------ 210 (256)
T cd08221 158 AETVVGTPYYMSPELC------QG---------VKYNFKSDIWALGCVLYELLTLKRTFDATNPLNLV------------ 210 (256)
T ss_pred ccccCCCccccCHhhc------CC---------CCCCCcchhHHHHHHHHHHHHCCCCCCCCCHHHHH------------
Confidence 4567899999999998 22 34568999999999999999999 99764433110
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..... .............+.+++.+||+.+|.+||++.++.+
T Consensus 211 -----~~~~~---~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~ 252 (256)
T cd08221 211 -----VKIVQ---GNYTPVVSVYSSELISLVHSLLQQDPEKRPTADEVLD 252 (256)
T ss_pred -----HHHHc---CCCCCCccccCHHHHHHHHHHcccCcccCCCHHHHhh
Confidence 00000 0000111123345889999999999999999887665
|
Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa |
| >cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-11 Score=118.22 Aligned_cols=97 Identities=14% Similarity=0.112 Sum_probs=64.5
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDY 96 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~ 96 (552)
|+++.+... .....||+.|+|||++ . ....+.++|+|||||++|+|++|+ ||.......
T Consensus 146 g~~~~~~~~-----~~~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~ 205 (290)
T cd05580 146 GFAKRVKGR-----TYTLCGTPEYLAPEII------L---------SKGYGKAVDWWALGILIYEMLAGYPPFFDDNPIQ 205 (290)
T ss_pred CCccccCCC-----CCCCCCCccccChhhh------c---------CCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 445544433 3456899999999998 2 245568999999999999999999 996543221
Q ss_pred hhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcch
Q 008820 97 IRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (552)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~ 155 (552)
+. +..... ...........+.+++.+||+.+|.+|++.
T Consensus 206 ~~-----------------~~~~~~----~~~~~~~~~~~l~~li~~~l~~~p~~R~~~ 243 (290)
T cd05580 206 IY-----------------EKILEG----KVRFPSFFSPDAKDLIRNLLQVDLTKRLGN 243 (290)
T ss_pred HH-----------------HHHhcC----CccCCccCCHHHHHHHHHHccCCHHHccCc
Confidence 10 000000 001111223458899999999999999853
|
Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi |
| >cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-11 Score=115.02 Aligned_cols=90 Identities=16% Similarity=0.230 Sum_probs=61.9
Q ss_pred ccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhhhhh
Q 008820 37 ESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIACLGM 114 (552)
Q Consensus 37 g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (552)
++..|+|||++ . ...++.++|+|||||+||||++ |+ ||.......+.
T Consensus 163 ~~~~y~~Pe~~------~---------~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~---------------- 211 (256)
T cd05059 163 FPVKWAPPEVF------D---------YSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEVV---------------- 211 (256)
T ss_pred CCccccCHHHh------c---------cCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHHHHH----------------
Confidence 45689999998 2 2556789999999999999999 78 99653322110
Q ss_pred hHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHH
Q 008820 115 YMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (552)
Q Consensus 115 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l 162 (552)
..+... ..........++.+++.+|+..+|++||++.++.+.+
T Consensus 212 -----~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~l 255 (256)
T cd05059 212 -----ESVSAGYRLYRPKLAPTEVYTIMYSCWHEKPEDRPAFKKLLSQL 255 (256)
T ss_pred -----HHHHcCCcCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence 000000 0011112344599999999999999999999887754
|
Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.7e-12 Score=140.33 Aligned_cols=111 Identities=22% Similarity=0.255 Sum_probs=68.6
Q ss_pred hccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhhh
Q 008820 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIACL 112 (552)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~ 112 (552)
...||+.|||||++ . ...+++++|||||||++|||+||+ ||+..... ......|...
T Consensus 837 ~~~~t~~y~aPE~~------~---------~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~-------~~~~~~~~~~ 894 (968)
T PLN00113 837 KCFISSAYVAPETR------E---------TKDITEKSDIYGFGLILIELLTGKSPADAEFGV-------HGSIVEWARY 894 (968)
T ss_pred CccccccccCcccc------c---------CCCCCcccchhhHHHHHHHHHhCCCCCCcccCC-------CCcHHHHHHH
Confidence 34789999999998 2 356789999999999999999999 99543211 0001111110
Q ss_pred hh----hHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 113 GM----YMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 113 ~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
.. ...+.+...............++.+++.+|++.+|.+||++.++.+.+.++.
T Consensus 895 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~~P~~RPt~~evl~~L~~~~ 952 (968)
T PLN00113 895 CYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATDPTARPCANDVLKTLESAS 952 (968)
T ss_pred hcCccchhheeCccccCCCCccHHHHHHHHHHHHhhCcCCchhCcCHHHHHHHHHHhh
Confidence 00 0000000000000000012234678899999999999999999999888765
|
|
| >cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-11 Score=115.42 Aligned_cols=98 Identities=16% Similarity=0.205 Sum_probs=67.0
Q ss_pred hccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhh
Q 008820 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
...+++.|+|||++ . ...++.++|||||||++|||++ |+ ||.........
T Consensus 167 ~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~------------- 218 (270)
T cd05056 167 KGKLPIKWMAPESI------N---------FRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNNDVI------------- 218 (270)
T ss_pred CCCccccccChhhh------c---------cCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHHHH-------------
Confidence 34456789999998 2 2456789999999999999996 99 99654322110
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
...... . ...........+.+++.+|+..+|.+||++.++...+..+.
T Consensus 219 ----~~~~~~-~--~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~ 266 (270)
T cd05056 219 ----GRIENG-E--RLPMPPNCPPTLYSLMTKCWAYDPSKRPRFTELKAQLSDIL 266 (270)
T ss_pred ----HHHHcC-C--cCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 000000 0 00011123345899999999999999999999988887764
|
Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-10 Score=122.94 Aligned_cols=250 Identities=12% Similarity=0.146 Sum_probs=169.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCce
Q 008820 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWR 341 (552)
Q Consensus 262 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 341 (552)
++.+..+..++...-|..+.+.. .++.+-..|.++.-+|... +.++|+.||.+++|....+......+.... .
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~----s 2252 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGN----S 2252 (2439)
T ss_pred cccCCcccCCccccceeccccee--EeecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCc----c
Confidence 34455555566565565433222 2344556777777777665 558999999999999987665544444332 2
Q ss_pred eeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEe---CCCcEEEEECCCCceeEEE
Q 008820 342 YSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGS---RDGTIRLWSLSDHSLLTVL 418 (552)
Q Consensus 342 ~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~ 418 (552)
...-..|+.+|+.+..+..||.+.+|.+. .++....+.|....+.+.|-...+++++ .++.+.+||..-.....-+
T Consensus 2253 ~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v 2331 (2439)
T KOG1064|consen 2253 RVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLV 2331 (2439)
T ss_pred hhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCccccee
Confidence 22234678889999999999999999986 6677777889999999999887777765 5789999997543322222
Q ss_pred ecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeeecccceEEEEEecCCEEEEEeCCCeEEEEecCCCee
Q 008820 419 EEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEF 496 (552)
Q Consensus 419 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~h~~~v~~v~~~~~~l~sgs~dg~i~iwd~~~~~~ 496 (552)
...|.+..+. +++.|....+++|+.+|.|++||.++ ..+.++. +. ...++++|+..|.++||++....+
T Consensus 2332 ~~~H~~gaT~-l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2332 HTCHDGGATV-LAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred eeecCCCceE-EEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-------hh-hhheeeccCcccceEEEEccccch
Confidence 2333344443 79999999999999999999999764 4444433 23 567899999999999999987655
Q ss_pred eeeeccCCCcccCcc--e--EEEEEe-CCeEEEEeCCCe
Q 008820 497 EEDVIPTGAIPCGSV--I--TALLYW-QGKLFVGCADRT 530 (552)
Q Consensus 497 ~~~~~~~~~~~~~~~--v--~~l~~~-~~~l~s~s~Dg~ 530 (552)
...+..... ..+. . ..+... .++|++++.||+
T Consensus 2403 l~~~p~e~a--k~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2403 LHTFPSEHA--KQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred hhcCchhhc--ccchhhhcCceeeeccCceEEEecCCCC
Confidence 544333221 0110 1 222222 367899988874
|
|
| >cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-11 Score=117.82 Aligned_cols=96 Identities=15% Similarity=0.177 Sum_probs=64.0
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....|++.|+|||++. + ...++.++|+|||||++|+|++|+ ||.......... ...
T Consensus 158 ~~~~~~~~~y~aPE~~~------~--------~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~-~~~------- 215 (277)
T cd06917 158 RSTFVGTPYWMAPEVIT------E--------GKYYDTKADIWSLGITIYEMATGNPPYSDVDAFRAMM-LIP------- 215 (277)
T ss_pred cccccCCcceeCHHHhc------c--------CCccccchhHHHHHHHHHHHHhCCCCCCCCChhhhhh-ccc-------
Confidence 34567999999999982 1 123467999999999999999999 996643331100 000
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.. ..+.-.......++.+++.+||..+|++||++.++.+
T Consensus 216 ---------~~--~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~il~ 254 (277)
T cd06917 216 ---------KS--KPPRLEDNGYSKLLREFVAACLDEEPKERLSAEELLK 254 (277)
T ss_pred ---------cC--CCCCCCcccCCHHHHHHHHHHcCCCcccCcCHHHHhh
Confidence 00 0000000012345889999999999999999887755
|
Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent |
| >cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3 | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-11 Score=116.21 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=62.8
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
....|++.|||||++...... .....++.++|+|||||++|||++ |+ ||.........
T Consensus 160 ~~~~~~~~y~aPE~~~~~~~~--------~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~------------ 219 (269)
T cd05087 160 DQLWVPLRWIAPELVDEVHGN--------LLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQVL------------ 219 (269)
T ss_pred CCcCCcccccCHhHhcccccc--------ccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChHHHH------------
Confidence 456789999999998211000 001235689999999999999996 99 99543222110
Q ss_pred hhhhhHHHHHHHHHHHhhhh-cCccccHHHHHHhhcccCCCCCcchhhHHHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKF-GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l 162 (552)
...........+.+.. ......+.+++.+|+ .+|++||++.++++.+
T Consensus 220 ----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~~l 267 (269)
T cd05087 220 ----TYTVREQQLKLPKPRLKLPLSDRWYEVMQFCW-LQPEQRPSAEEVHLLL 267 (269)
T ss_pred ----HHHhhcccCCCCCCccCCCCChHHHHHHHHHh-cCcccCCCHHHHHHHh
Confidence 0000000000011111 112334778888888 6899999999998764
|
Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells |
| >KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-11 Score=119.09 Aligned_cols=119 Identities=17% Similarity=0.191 Sum_probs=83.2
Q ss_pred hhhhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-C
Q 008820 10 TKSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-G 86 (552)
Q Consensus 10 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g 86 (552)
+..++||. ||||.+.+.+-. .-.+-+==.-|.|||.+ ..++++.|||||||||+|+||+| |
T Consensus 338 ~~~~vKIsDFGLAr~~~d~~Y~-~~~~~kfPIkWtAPEa~---------------~~~~FS~kSDVWSFGVlL~E~fT~G 401 (468)
T KOG0197|consen 338 EDLVVKISDFGLARLIGDDEYT-ASEGGKFPIKWTAPEAL---------------NYGKFSSKSDVWSFGVLLWELFTYG 401 (468)
T ss_pred cCceEEEcccccccccCCCcee-ecCCCCCCceecCHHHH---------------hhCCcccccceeehhhhHHHHhccC
Confidence 45689999 999977776542 33333445679999999 45788899999999999999988 6
Q ss_pred C-CchHHHhhhhh-hc-cccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHH
Q 008820 87 E-QFTKELIDYIR-CV-STKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (552)
Q Consensus 87 ~-pf~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~ 163 (552)
+ |+..-+...+. .+ .+..+ +.+...+.++=++...|...+|++||+-..+...+.
T Consensus 402 ~~py~~msn~ev~~~le~GyRl----------------------p~P~~CP~~vY~lM~~CW~~~P~~RPtF~~L~~~l~ 459 (468)
T KOG0197|consen 402 RVPYPGMSNEEVLELLERGYRL----------------------PRPEGCPDEVYELMKSCWHEDPEDRPTFETLREVLE 459 (468)
T ss_pred CCCCCCCCHHHHHHHHhccCcC----------------------CCCCCCCHHHHHHHHHHhhCCcccCCCHHHHHHHHH
Confidence 7 88664433111 00 11111 112224455778889999999999999887777666
Q ss_pred hhh
Q 008820 164 ELI 166 (552)
Q Consensus 164 ~~~ 166 (552)
.+.
T Consensus 460 ~~~ 462 (468)
T KOG0197|consen 460 DFF 462 (468)
T ss_pred Hhh
Confidence 554
|
|
| >cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.3e-12 Score=120.33 Aligned_cols=100 Identities=13% Similarity=0.193 Sum_probs=63.8
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
....|++.|+|||++..... ....++.++|+|||||++|||++|+ ||.........
T Consensus 168 ~~~~~~~~y~aPE~~~~~~~----------~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~------------- 224 (292)
T cd06644 168 DSFIGTPYWMAPEVVMCETM----------KDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVL------------- 224 (292)
T ss_pred ceecCCccccCceeeccccc----------cCCCCCchhhhHhHHHHHHHHhcCCCCCccccHHHHH-------------
Confidence 45679999999999821110 1234567999999999999999999 99653322110
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
........ ...........++.+++.+||..+|++||+..++.+
T Consensus 225 ----~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~ 268 (292)
T cd06644 225 ----LKIAKSEP-PTLSQPSKWSMEFRDFLKTALDKHPETRPSAAQLLE 268 (292)
T ss_pred ----HHHhcCCC-ccCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence 00000000 000001122345889999999999999999887654
|
Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. |
| >cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-11 Score=115.34 Aligned_cols=92 Identities=17% Similarity=0.164 Sum_probs=63.2
Q ss_pred ccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhhhh
Q 008820 35 FLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIACL 112 (552)
Q Consensus 35 ~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~~~ 112 (552)
..|+..|+|||++ . ...++.++|||||||+||+|++ |+ ||.......+.
T Consensus 161 ~~~~~~y~~pe~~------~---------~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~-------------- 211 (256)
T cd05113 161 SKFPVRWSPPEVL------L---------YSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSETV-------------- 211 (256)
T ss_pred CccChhhCCHHHH------h---------cCcccchhHHHHHHHHHHHHhcCCCCCcCcCCHHHHH--------------
Confidence 3467789999998 2 2456789999999999999999 99 99653322110
Q ss_pred hhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHH
Q 008820 113 GMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (552)
Q Consensus 113 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l 162 (552)
...... ...........+.+++.+||+.+|.+||++.++...+
T Consensus 212 -------~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~~ 255 (256)
T cd05113 212 -------EKVSQGLRLYRPHLASEKVYAIMYSCWHEKAEERPTFQQLLSSI 255 (256)
T ss_pred -------HHHhcCCCCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHhh
Confidence 000000 0001112334589999999999999999998877643
|
Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds |
| >cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.8e-11 Score=116.81 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=62.8
Q ss_pred ccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhh-hhhhc-c--ccCCCchh
Q 008820 35 FLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELID-YIRCV-S--TKASDDNI 109 (552)
Q Consensus 35 ~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~-~~~~~-~--~~~~~~~~ 109 (552)
-.+++.|+|||++ .+ ...++.++|+|||||+||+|++|. ||.+.+.. .+..+ . .......|
T Consensus 171 ~~~~~~~~aPE~~------~~--------~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (295)
T cd07837 171 EIVTLWYRAPEVL------LG--------STHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHIFKLLGTPTEQVW 236 (295)
T ss_pred cccccCCCChHHh------hC--------CCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCCChhhC
Confidence 3678999999998 22 134568999999999999999999 99543221 11000 0 00000001
Q ss_pred hhhhhhHHHHH--H-HHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 110 ACLGMYMAWME--K-VTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 110 ~~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
........... . .+..+.........++.+++.+||..+|.+||++.++..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~ 290 (295)
T cd07837 237 PGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALT 290 (295)
T ss_pred cchhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhc
Confidence 00000000000 0 000011111123445889999999999999999876543
|
Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm |
| >cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-11 Score=118.88 Aligned_cols=99 Identities=17% Similarity=0.196 Sum_probs=62.6
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhh-hhhhccccCCCchhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELID-YIRCVSTKASDDNIA 110 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~-~~~~~~~~~~~~~~~ 110 (552)
....|++.|+|||++.... ......+.++|||||||++|||++|+ ||...... .+..+.....
T Consensus 186 ~~~~~~~~y~aPE~~~~~~----------~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~----- 250 (291)
T cd06639 186 NTSVGTPFWMAPEVIACEQ----------QYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPVKTLFKIPRNPP----- 250 (291)
T ss_pred cCccCCccccChhhhcCCC----------CcccccCCccchHHHHHHHHHHhhCCCCCCCCcHHHHHHHHhcCCC-----
Confidence 3467999999999982100 01123568999999999999999999 99553221 0100000000
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
+ ...........+.+++.+|++.+|++||++.++..
T Consensus 251 ------------~--~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~il~ 286 (291)
T cd06639 251 ------------P--TLLHPEKWCRSFNHFISQCLIKDFEARPSVTHLLE 286 (291)
T ss_pred ------------C--CCCcccccCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence 0 00000112235889999999999999999887655
|
Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre |
| >cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.8e-11 Score=114.90 Aligned_cols=95 Identities=19% Similarity=0.314 Sum_probs=62.8
Q ss_pred ccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhhhh
Q 008820 35 FLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIACLG 113 (552)
Q Consensus 35 ~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~~ 113 (552)
..|++.|+|||++ .+ ...++++|+|||||++|+|++|+ ||....... .
T Consensus 159 ~~~~~~y~~PE~~------~~---------~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~----------------~ 207 (265)
T cd06605 159 FVGTSSYMAPERI------QG---------NDYSVKSDIWSLGLSLIELATGRFPYPPENDPP----------------D 207 (265)
T ss_pred ccCChhccCHHHH------cC---------CCCCchhhHHHHHHHHHHHHhCCCCCCcccccc----------------c
Confidence 8899999999998 32 45678999999999999999999 996532110 0
Q ss_pred hhHHHHHHHHHHHhhhhc--CccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 114 MYMAWMEKVTYLLENKFG--SEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.................. ....++.+++.+|+..+|.+||++.++..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~ 256 (265)
T cd06605 208 GIFELLQYIVNEPPPRLPSGKFSPDFQDFVNLCLIKDPRERPSYKELLE 256 (265)
T ss_pred cHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHcCCCchhCcCHHHHhh
Confidence 000000100000000000 02335889999999999999999887665
|
Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 552 | ||||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 3e-13 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 4e-07 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-11 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 7e-09 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 4e-11 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 4e-11 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 4e-11 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 5e-11 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 6e-11 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 7e-11 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 5e-10 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 5e-10 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 6e-10 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 6e-10 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 6e-10 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 6e-10 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 6e-10 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 6e-10 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 7e-10 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 4e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 7e-10 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 7e-10 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 7e-10 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 8e-10 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 8e-10 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-09 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-09 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-09 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 3e-09 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 3e-09 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 3e-09 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 3e-09 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 3e-09 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 6e-09 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 7e-09 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 4e-08 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 6e-06 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 4e-05 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 5e-08 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 1e-07 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-05 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 3e-05 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 9e-07 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 8e-06 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 1e-06 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-05 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 1e-06 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 9e-06 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 2e-06 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 3e-06 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 3e-06 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 5e-05 | ||
| 3acp_A | 417 | Crystal Structure Of Yeast Rpn14, A Chaperone Of Th | 5e-05 | ||
| 3vl1_A | 420 | Crystal Structure Of Yeast Rpn14 Length = 420 | 6e-05 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 7e-05 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 1e-04 |
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 | Back alignment and structure |
|
| >pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 552 | |||
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.98 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.98 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.98 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.98 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.98 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.98 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.97 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.97 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.96 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.96 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.95 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.95 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.95 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.95 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.95 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.95 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.93 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.93 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.93 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.93 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.89 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.86 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.86 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.86 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.85 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.84 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.84 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.83 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.81 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.81 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.8 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.79 | |
| 4aw0_A | 311 | HPDK1, 3-phosphoinositide-dependent protein kinase | 99.79 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.79 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.78 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.78 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.77 | |
| 3omv_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.77 | |
| 4aoj_A | 329 | High affinity nerve growth factor receptor; transf | 99.77 | |
| 4g3f_A | 336 | NF-kappa-beta-inducing kinase; non-RD kinase, prot | 99.77 | |
| 3hyh_A | 275 | Carbon catabolite-derepressing protein kinase; kin | 99.77 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.76 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.76 | |
| 4b9d_A | 350 | Serine/threonine-protein kinase NEK1; transferase, | 99.75 | |
| 3fpq_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.75 | |
| 4fih_A | 346 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.75 | |
| 4asz_A | 299 | BDNF/NT-3 growth factors receptor; transferase, TR | 99.75 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.75 | |
| 3ubd_A | 304 | Ribosomal protein S6 kinase alpha-3; kinase-inhibi | 99.75 | |
| 4gt4_A | 308 | Tyrosine-protein kinase transmembrane receptor RO; | 99.74 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.74 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.74 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.74 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.74 | |
| 4ase_A | 353 | Vascular endothelial growth factor receptor 2; tra | 99.74 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.74 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.74 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.73 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.73 | |
| 4fie_A | 423 | Serine/threonine-protein kinase PAK 4; kinase doma | 99.72 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.72 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.71 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.69 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.67 | |
| 3hmm_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.67 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.65 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.64 | |
| 4g31_A | 299 | Eukaryotic translation initiation factor 2-alpha; | 99.64 | |
| 4b99_A | 398 | Mitogen-activated protein kinase 7; transferase, i | 99.63 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.63 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.63 | |
| 3v5w_A | 689 | G-protein coupled receptor kinase 2; inhibitor com | 99.62 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.62 | |
| 3uto_A | 573 | Twitchin; kinase, muscle sarcomere, transferase; H | 99.61 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.6 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.6 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.6 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.6 | |
| 4f9c_A | 361 | Cell division cycle 7-related protein kinase; Ser/ | 99.6 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.58 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.57 | |
| 3soa_A | 444 | Calcium/calmodulin-dependent protein kinase type a | 99.56 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.55 | |
| 2yab_A | 361 | Death-associated protein kinase 2; apoptosis, tran | 99.55 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.55 | |
| 2izr_A | 330 | Casein kinase I isoform gamma-3; serine/threonine- | 99.54 | |
| 3uzp_A | 296 | CKI-delta, CKID, casein kinase I isoform delta; CK | 99.53 | |
| 2y0a_A | 326 | Death-associated protein kinase 1; transferase, ca | 99.53 | |
| 4hgt_A | 296 | Casein kinase I isoform delta; CK1D, inhibitor, tr | 99.53 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.52 | |
| 2bdw_A | 362 | Hypothetical protein K11E8.1D; kinase, calmodulin | 99.52 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.52 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.52 | |
| 1csn_A | 298 | Casein kinase-1; phosphotransferase; HET: ATP; 2.0 | 99.51 | |
| 3fe3_A | 328 | MAP/microtubule affinity-regulating kinase 3; seri | 99.51 | |
| 4eqm_A | 294 | Protein kinase; transferase; HET: ANP; 3.00A {Stap | 99.51 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.51 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.5 | |
| 1o6l_A | 337 | RAC-beta serine/threonine protein kinase; protein | 99.5 | |
| 3c0i_A | 351 | Peripheral plasma membrane protein CASK; neurexin, | 99.5 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.5 | |
| 3p86_A | 309 | Serine/threonine-protein kinase CTR1; ETR1, ERS1, | 99.5 | |
| 2qr7_A | 342 | Ribosomal protein S6 kinase alpha-3; kinase domain | 99.5 | |
| 3zgw_A | 347 | Maternal embryonic leucine zipper kinase; transfer | 99.5 | |
| 1tki_A | 321 | Titin; serine kinase, muscle, autoinhibition; 2.00 | 99.49 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.49 | |
| 2r5t_A | 373 | Serine/threonine-protein kinase SGK1; AGC protein | 99.49 | |
| 2v62_A | 345 | Serine/threonine-protein kinase VRK2; transferase, | 99.49 | |
| 3txo_A | 353 | PKC-L, NPKC-ETA, protein kinase C ETA type; phosph | 99.49 | |
| 3soc_A | 322 | Activin receptor type-2A; structural genomics cons | 99.49 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.48 | |
| 3op5_A | 364 | Serine/threonine-protein kinase VRK1; adenosine tr | 99.48 | |
| 2i0e_A | 353 | Protein kinase C-beta II; serine/threonine protein | 99.48 | |
| 2zmd_A | 390 | Dual specificity protein kinase TTK; MPS1, T686A, | 99.48 | |
| 3vhe_A | 359 | Vascular endothelial growth factor receptor 2; kin | 99.48 | |
| 3l9p_A | 367 | Anaplastic lymphoma kinase; kinase domain, ATP-bin | 99.48 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.48 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.48 | |
| 2w4o_A | 349 | Calcium/calmodulin-dependent protein kinase type I | 99.48 | |
| 3fxz_A | 297 | Serine/threonine-protein kinase PAK 1; transferase | 99.48 | |
| 4f0f_A | 287 | Serine/threonine-protein kinase ROCO4; LRRK2, ATP- | 99.47 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.47 | |
| 3dbq_A | 343 | Dual specificity protein kinase TTK; MPS1 structur | 99.47 | |
| 4euu_A | 319 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.47 | |
| 1rdq_E | 350 | PKA C-alpha, CAMP-dependent protein kinase, alpha- | 99.47 | |
| 2a2a_A | 321 | Death-associated protein kinase 2; autoinhibition, | 99.47 | |
| 1xjd_A | 345 | Protein kinase C, theta type; PKC-theta, ATP, AMP, | 99.47 | |
| 1fot_A | 318 | TPK1 delta, CAMP-dependent protein kinase type 1; | 99.47 | |
| 3lij_A | 494 | Calcium/calmodulin dependent protein kinase with A | 99.47 | |
| 3f3z_A | 277 | Calcium/calmodulin-dependent protein kinase with d | 99.46 | |
| 2y7j_A | 365 | Phosphorylase B kinase gamma catalytic chain, test | 99.46 | |
| 2jii_A | 352 | Serine/threonine-protein kinase VRK3 molecule: VA | 99.46 | |
| 3sv0_A | 483 | Casein kinase I-like; typical kinase domain fold, | 99.46 | |
| 3g33_A | 308 | Cell division protein kinase 4; Ser/Thr protein ki | 99.46 | |
| 3rgf_A | 405 | Cyclin-dependent kinase 8; protein kinase complex, | 99.46 | |
| 2psq_A | 370 | Fibroblast growth factor receptor 2; kinase domain | 99.46 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.46 | |
| 3kk8_A | 284 | Calcium/calmodulin dependent protein kinase II; AT | 99.46 | |
| 4dc2_A | 396 | Protein kinase C IOTA type; kinase, substrate, cel | 99.46 | |
| 2x4f_A | 373 | Myosin light chain kinase family member 4; LUNG, b | 99.45 | |
| 4ejn_A | 446 | RAC-alpha serine/threonine-protein kinase; AKT1, a | 99.45 | |
| 3kex_A | 325 | Receptor tyrosine-protein kinase ERBB-3; kinase do | 99.45 | |
| 3lb7_A | 307 | RAF proto-oncogene serine/threonine-protein kinas; | 99.45 | |
| 1nxk_A | 400 | MAP kinase-activated protein kinase 2; MK2, phosph | 99.45 | |
| 3poz_A | 327 | Epidermal growth factor receptor; kinase domain, a | 99.45 | |
| 3mwu_A | 486 | Calmodulin-domain protein kinase 1; serine/threoni | 99.45 | |
| 2eva_A | 307 | TAK1 kinase - TAB1 chimera fusion protein; transfe | 99.44 | |
| 2vx3_A | 382 | Dual specificity tyrosine-phosphorylation- regula | 99.44 | |
| 1kob_A | 387 | Twitchin; kinase, intrasteric regulation; 2.30A {A | 99.44 | |
| 3lm5_A | 327 | Serine/threonine-protein kinase 17B; STK17B, serin | 99.44 | |
| 3c4z_A | 543 | Rhodopsin kinase; Ser/Thr kinase, RGS homology dom | 99.44 | |
| 3a8x_A | 345 | Protein kinase C IOTA type; transferase; HET: TPO; | 99.44 | |
| 2c30_A | 321 | Serine/threonine-protein kinase PAK 6; CRIB domain | 99.43 | |
| 2xir_A | 316 | Vascular endothelial growth factor receptor 2; ang | 99.43 | |
| 3hko_A | 345 | Calcium/calmodulin-dependent protein kinase with d | 99.43 | |
| 3lzb_A | 327 | Epidermal growth factor receptor; epidermal growth | 99.43 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.43 | |
| 3ork_A | 311 | Serine/threonine protein kinase; structural genomi | 99.43 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.43 | |
| 3dtc_A | 271 | Mitogen-activated protein kinase kinase kinase 9; | 99.43 | |
| 3nyv_A | 484 | Calmodulin-domain protein kinase 1; serine/threoni | 99.43 | |
| 3oz6_A | 388 | Mitogen-activated protein kinase 1, serine/threon | 99.43 | |
| 1t46_A | 313 | HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom | 99.43 | |
| 2h34_A | 309 | Serine/threonine-protein kinase PKNE; apoenzyme, t | 99.43 | |
| 2eue_A | 275 | Carbon catabolite derepressing protein kinase; kin | 99.43 | |
| 3is5_A | 285 | Calcium-dependent protein kinase; CDPK, structural | 99.43 | |
| 3q5i_A | 504 | Protein kinase; CDPK, malaria, phosphotransferase, | 99.42 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.42 | |
| 3v8s_A | 410 | RHO-associated protein kinase 1; dimerization, myo | 99.42 | |
| 4hcu_A | 269 | Tyrosine-protein kinase ITK/TSK; transferase-trans | 99.42 | |
| 3ttj_A | 464 | Mitogen-activated protein kinase 10; JNK3, protein | 99.42 | |
| 2qkw_B | 321 | Protein kinase; three-helix bundle motif, AVRPTO-P | 99.42 | |
| 1vzo_A | 355 | Ribosomal protein S6 kinase alpha 5; protein kinas | 99.42 | |
| 3niz_A | 311 | Rhodanese family protein; structural genomics, str | 99.42 | |
| 3tt0_A | 382 | Basic fibroblast growth factor receptor 1; kinase | 99.42 | |
| 1rjb_A | 344 | FL cytokine receptor; kinase, structure, autoinhib | 99.42 | |
| 3qup_A | 323 | Tyrosine-protein kinase receptor TYRO3; protein ki | 99.42 | |
| 2i1m_A | 333 | Macrophage colony-stimulating factor 1 receptor; k | 99.42 | |
| 3i6u_A | 419 | CDS1, serine/threonine-protein kinase CHK2; Ser/Th | 99.42 | |
| 3og7_A | 289 | AKAP9-BRAF fusion protein; proto-oncogene, V600E, | 99.42 | |
| 3kvw_A | 429 | DYRK2, dual specificity tyrosine-phosphorylation-r | 99.42 | |
| 3bhy_A | 283 | Death-associated protein kinase 3; death associate | 99.41 | |
| 2nru_A | 307 | Interleukin-1 receptor-associated kinase 4; inhibi | 99.41 | |
| 2acx_A | 576 | G protein-coupled receptor kinase 6; GRK, G transf | 99.41 | |
| 3a62_A | 327 | Ribosomal protein S6 kinase beta-1; kinase domain, | 99.41 | |
| 2y94_A | 476 | 5'-AMP-activated protein kinase catalytic subunit; | 99.41 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.41 | |
| 2ivs_A | 314 | Proto-oncogene tyrosine-protein kinase receptor RE | 99.41 | |
| 3h4j_B | 336 | AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin | 99.41 | |
| 3tki_A | 323 | Serine/threonine-protein kinase CHK1; cell checkpo | 99.41 | |
| 3llt_A | 360 | Serine/threonine kinase-1, pflammer; lammer kinase | 99.41 | |
| 4fr4_A | 384 | YANK1, serine/threonine-protein kinase 32A; struct | 99.41 | |
| 4eut_A | 396 | Serine/threonine-protein kinase TBK1; ATP binding, | 99.4 | |
| 3kn6_A | 325 | Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1 | 99.4 | |
| 2pmi_A | 317 | Negative RE, cyclin-dependent protein kinase PHO85 | 99.4 | |
| 3kmu_A | 271 | ILK, integrin-linked kinase; cell adhesion, ANK re | 99.4 | |
| 3kul_A | 325 | Ephrin type-A receptor 8; ATP-binding, kinase, nuc | 99.4 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.4 | |
| 2zv2_A | 298 | Calcium/calmodulin-dependent protein kinase kinas; | 99.4 | |
| 2yfx_A | 327 | Tyrosine-protein kinase receptor; nucleotide-bindi | 99.4 | |
| 2ac3_A | 316 | MAP kinase-interacting serine/threonine kinase 2; | 99.4 | |
| 2jam_A | 304 | Calcium/calmodulin-dependent protein kinase type 1 | 99.39 | |
| 1luf_A | 343 | Muscle-specific tyrosine kinase receptor MUSK; pho | 99.39 | |
| 3fdn_A | 279 | Serine/threonine-protein kinase 6; aurora kinase i | 99.39 | |
| 1ob3_A | 288 | PFPK5, cell division control protein 2 homolog; tr | 99.39 | |
| 3p1a_A | 311 | MYT1 kinase, membrane-associated tyrosine- and thr | 99.39 | |
| 4aw2_A | 437 | Serine/threonine-protein kinase MRCK alpha; transf | 99.39 | |
| 1q8y_A | 373 | SR protein kinase; transferase; HET: ADP ADE; 2.05 | 99.39 | |
| 3gbz_A | 329 | Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide- | 99.39 | |
| 2eu9_A | 355 | Dual specificity protein kinase CLK3; kinase domai | 99.39 | |
| 3q4u_A | 301 | Activin receptor type-1; structural genomics conso | 99.39 | |
| 1mp8_A | 281 | Focal adhesion kinase 1; tyrosine protein kinase, | 99.39 | |
| 3t9t_A | 267 | Tyrosine-protein kinase ITK/TSK; kinase domain, al | 99.39 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.39 | |
| 2wtk_C | 305 | Serine/threonine-protein kinase 11; transferase-me | 99.38 | |
| 1j1b_A | 420 | Glycogen synthase kinase-3 beta; complex, TAU, AMP | 99.38 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 99.38 | |
| 3s95_A | 310 | LIMK-1, LIM domain kinase 1; structural genomics, | 99.38 | |
| 3cc6_A | 281 | Protein tyrosine kinase 2 beta; focal adhesion kin | 99.38 | |
| 3fhr_A | 336 | MAP kinase-activated protein kinase 3; kinase-inhi | 99.38 | |
| 3sxs_A | 268 | Cytoplasmic tyrosine-protein kinase BMX; transfera | 99.38 | |
| 1wak_A | 397 | Serine/threonine-protein kinase SPRK1; SRPK, trans | 99.38 | |
| 4fvq_A | 289 | Tyrosine-protein kinase JAK2; janus protein kinase | 99.38 | |
| 3gxj_A | 303 | TGF-beta receptor type-1; ALK5, kinase, inhibitor, | 99.37 | |
| 3uc3_A | 361 | Serine/threonine-protein kinase SRK2I; SNRK2, ABA | 99.37 | |
| 2pvf_A | 334 | Fibroblast growth factor receptor 2; kinase domain | 99.37 | |
| 1p4o_A | 322 | Insulin-like growth factor I receptor protein; IGF | 99.37 | |
| 3cek_A | 313 | Dual specificity protein kinase TTK; HMPS1, PYT, E | 99.37 | |
| 4e7w_A | 394 | Glycogen synthase kinase 3; GSK3, PTyr195, transfe | 99.37 | |
| 1qcf_A | 454 | Haematopoetic cell kinase (HCK); tyrosine kinase-i | 99.37 | |
| 3cbl_A | 377 | C-FES, proto-oncogene tyrosine-protein kinase FES/ | 99.37 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.37 | |
| 3brb_A | 313 | Proto-oncogene tyrosine-protein kinase MER; ATP-bi | 99.37 | |
| 2wqm_A | 310 | Serine/threonine-protein kinase NEK7; ATP-binding, | 99.37 | |
| 1cm8_A | 367 | Phosphorylated MAP kinase P38-gamma; phosphorylati | 99.37 | |
| 3byv_A | 377 | Rhoptry kinase; malaria, transferase, structural g | 99.36 | |
| 3q60_A | 371 | ROP5B; pseudokinase, transferase; HET: ATP; 1.72A | 99.36 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.36 | |
| 2vgo_A | 284 | Serine/threonine-protein kinase 12-A; nucleotide-b | 99.36 | |
| 3gen_A | 283 | Tyrosine-protein kinase BTK; bruton'S tyrosine kin | 99.36 | |
| 3g2f_A | 336 | Bone morphogenetic protein receptor type-2; kinase | 99.36 | |
| 3dls_A | 335 | PAS domain-containing serine/threonine-protein KI; | 99.36 | |
| 2xrw_A | 371 | Mitogen-activated protein kinase 8; transcription, | 99.36 | |
| 3qyz_A | 364 | Mitogen-activated protein kinase 1; transferase, s | 99.36 | |
| 3e3p_A | 360 | Protein kinase, putative glycogen synthase kinase; | 99.36 | |
| 3mtl_A | 324 | Cell division protein kinase 16; pctaire1, indirub | 99.36 | |
| 1u59_A | 287 | Tyrosine-protein kinase ZAP-70; transferase; HET: | 99.36 | |
| 1z57_A | 339 | Dual specificity protein kinase CLK1; protein tyro | 99.36 | |
| 2ycf_A | 322 | Serine/threonine-protein kinase CHK2; transferase, | 99.36 | |
| 2fst_X | 367 | Mitogen-activated protein kinase 14; active mutant | 99.36 | |
| 3mi9_A | 351 | Cell division protein kinase 9; P-TEFB, HIV-1, pro | 99.35 | |
| 1ua2_A | 346 | CAK, cell division protein kinase 7; cell cycle, p | 99.35 | |
| 1fmk_A | 452 | C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros | 99.35 | |
| 1xbb_A | 291 | Tyrosine-protein kinase SYK; gleevec, STI-571, ima | 99.35 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.35 | |
| 4exu_A | 371 | Mitogen-activated protein kinase 13; P38 kinase, t | 99.35 | |
| 2qol_A | 373 | Ephrin receptor; receptor tyrosine kinase, juxtame | 99.35 | |
| 2y4i_B | 319 | KSR2, HKSR2, kinase suppressor of RAS 2; transfera | 99.35 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.35 | |
| 3kfa_A | 288 | Tyrosine-protein kinase ABL1; CML, drug resistance | 99.35 | |
| 3mdy_A | 337 | Bone morphogenetic protein receptor type-1B; compl | 99.35 | |
| 3dzo_A | 413 | Rhoptry kinase domain; parasitic disease, transfer | 99.34 | |
| 2vd5_A | 412 | DMPK protein; serine/threonine-protein kinase, kin | 99.34 | |
| 1mqb_A | 333 | Ephrin type-A receptor 2; tyrosine protein kinase, | 99.34 | |
| 1u5q_A | 348 | Serine/threonine protein kinase TAO2; transferase; | 99.34 | |
| 1phk_A | 298 | Phosphorylase kinase; glycogen metabolism, transfe | 99.34 | |
| 1opk_A | 495 | P150, C-ABL, proto-oncogene tyrosine-protein kinas | 99.34 | |
| 3lxl_A | 327 | Tyrosine-protein kinase JAK3; TYK2, inflammation, | 99.34 | |
| 2w5a_A | 279 | Serine/threonine-protein kinase NEK2; Ser/Thr prot | 99.34 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.34 | |
| 3e7e_A | 365 | HBUB1, BUB1A, mitotic checkpoint serine/threonine- | 99.34 | |
| 2wei_A | 287 | Calmodulin-domain protein kinase 1, putative; nucl | 99.34 | |
| 3o0g_A | 292 | Cell division protein kinase 5; kinase activator c | 99.34 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.34 | |
| 2owb_A | 335 | Serine/threonine-protein kinase PLK1; catalytic do | 99.33 | |
| 1blx_A | 326 | Cyclin-dependent kinase 6; inhibitor protein, cycl | 99.33 | |
| 2clq_A | 295 | Mitogen-activated protein kinase kinase kinase 5; | 99.33 | |
| 3ugc_A | 295 | Tyrosine-protein kinase JAK2; small molecule inhib | 99.33 | |
| 4agu_A | 311 | Cyclin-dependent kinase-like 1; transferase, phosp | 99.33 | |
| 1byg_A | 278 | CSK, protein (C-terminal SRC kinase); protein kina | 99.33 | |
| 2buj_A | 317 | Serine/threonine-protein kinase 16; transferase, A | 99.33 | |
| 2rku_A | 294 | Serine/threonine-protein kinase PLK1; structure of | 99.33 | |
| 3lxp_A | 318 | Non-receptor tyrosine-protein kinase TYK2; JAK3, i | 99.33 | |
| 1qpc_A | 279 | LCK kinase; alpha beta fold, transferase; HET: PTR | 99.33 | |
| 4e5w_A | 302 | Tyrosine-protein kinase JAK1; kinase domain, trans | 99.33 | |
| 3a7i_A | 303 | MST3 kinase, serine/threonine kinase 24 (STE20 hom | 99.33 | |
| 2h6d_A | 276 | 5'-AMP-activated protein kinase catalytic subunit | 99.33 | |
| 3pls_A | 298 | Macrophage-stimulating protein receptor; protein k | 99.33 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.32 | |
| 3ll6_A | 337 | Cyclin G-associated kinase; transferase, protein k | 99.32 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.32 | |
| 4aaa_A | 331 | Cyclin-dependent kinase-like 2; transferase, phosp | 99.32 | |
| 2a19_B | 284 | Interferon-induced, double-stranded RNA-activated | 99.32 | |
| 1t4h_A | 290 | Serine/threonine-protein kinase WNK1; protein seri | 99.32 | |
| 3c1x_A | 373 | Hepatocyte growth factor receptor; receptor tyrosi | 99.32 | |
| 1fvr_A | 327 | Tyrosine-protein kinase TIE-2; tyrosine kinase, tr | 99.32 | |
| 1b6c_B | 342 | TGF-B superfamily receptor type I; complex (isomer | 99.32 | |
| 3cok_A | 278 | Serine/threonine-protein kinase PLK4; POLO-like ki | 99.32 | |
| 1k9a_A | 450 | Carboxyl-terminal SRC kinase; COOH-terminal SRC ki | 99.32 | |
| 4fl3_A | 635 | Tyrosine-protein kinase SYK; transferase; HET: ANP | 99.32 | |
| 1u46_A | 291 | ACK-1, activated CDC42 kinase 1; tyrosine kinase, | 99.32 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.31 | |
| 2yex_A | 276 | Serine/threonine-protein kinase CHK1; transferase, | 99.31 | |
| 2x7f_A | 326 | TRAF2 and NCK-interacting protein kinase; serine/t | 99.31 | |
| 3f66_A | 298 | Hepatocyte growth factor receptor; C-Met, protein | 99.31 | |
| 2rio_A | 434 | Serine/threonine-protein kinase/endoribonuclease I | 99.31 | |
| 3eb0_A | 383 | Putative uncharacterized protein; kinase cryptospo | 99.3 | |
| 2ozo_A | 613 | Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t | 99.3 | |
| 3com_A | 314 | Serine/threonine-protein kinase 4; MST1, STE20-lik | 99.3 | |
| 3coi_A | 353 | Mitogen-activated protein kinase 13; P38D, P38delt | 99.3 | |
| 2h8h_A | 535 | Proto-oncogene tyrosine-protein kinase SRC; SRC ki | 99.3 | |
| 3a99_A | 320 | Proto-oncogene serine/threonine-protein kinase PI; | 99.3 | |
| 3an0_A | 340 | Dual specificity mitogen-activated protein kinase; | 99.3 | |
| 2r3i_A | 299 | Cell division protein kinase 2; serine/threonine-p | 99.3 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.3 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.29 | |
| 3fme_A | 290 | Dual specificity mitogen-activated protein kinase; | 99.29 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.29 | |
| 3gni_B | 389 | Strad alpha; kinase fold, pseudokinase, alpha heli | 99.28 | |
| 3qd2_B | 332 | Eukaryotic translation initiation factor 2-alpha; | 99.28 | |
| 3eqc_A | 360 | Dual specificity mitogen-activated protein kinase; | 99.28 | |
| 3nsz_A | 330 | CK II alpha, casein kinase II subunit alpha; inhib | 99.28 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.28 | |
| 3p23_A | 432 | Serine/threonine-protein kinase/endoribonuclease; | 99.28 | |
| 3rp9_A | 458 | Mitogen-activated protein kinase; structural genom | 99.28 | |
| 3pg1_A | 362 | Mitogen-activated protein kinase, putative (MAP K | 99.27 | |
| 2j0j_A | 656 | Focal adhesion kinase 1; cell migration, FERM, tra | 99.27 | |
| 2b9h_A | 353 | MAP kinase FUS3, mitogen-activated protein kinase | 99.27 | |
| 3n9x_A | 432 | Phosphotransferase; malaria kinase, structural gen | 99.26 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.26 | |
| 2dyl_A | 318 | Dual specificity mitogen-activated protein kinase | 99.26 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.26 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.25 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.25 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.25 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.24 | |
| 2iwi_A | 312 | Serine/threonine-protein kinase PIM-2; nucleotide- | 99.24 | |
| 2i6l_A | 320 | Mitogen-activated protein kinase 6; MAPK6, ERK3, e | 99.24 | |
| 2w1i_A | 326 | JAK2; chromosomal rearrangement, nucleotide-bindin | 99.23 | |
| 2j7t_A | 302 | Serine/threonine-protein kinase 10; transferase, A | 99.23 | |
| 3aln_A | 327 | Dual specificity mitogen-activated protein kinase; | 99.23 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.22 | |
| 2vwi_A | 303 | Serine/threonine-protein kinase OSR1; STE kinase, | 99.2 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.2 | |
| 1x8b_A | 289 | WEE1HU, WEE1-like protein kinase; cell cycle, tran | 99.2 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.19 | |
| 2pml_X | 348 | PFPK7, Ser/Thr protein kinase; phosphorylati trans | 99.19 | |
| 1zy4_A | 303 | Serine/threonine-protein kinase GCN2; translation | 99.14 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.13 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.13 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.13 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.12 | |
| 3qa8_A | 676 | MGC80376 protein; kinase ubiquitin-like domain, ph | 99.11 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.11 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.08 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.07 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.06 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.05 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.04 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.04 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.0 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.98 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.97 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.95 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.95 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.94 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.93 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.93 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.92 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.92 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.91 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.9 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.84 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.83 | |
| 3uqc_A | 286 | Probable conserved transmembrane protein; structur | 98.82 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.82 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.8 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.79 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.79 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.78 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.75 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.74 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.73 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.72 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.71 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.71 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.67 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.67 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.6 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.59 | |
| 3m2w_A | 299 | MAP kinase-activated protein kinase 2; small molec | 98.58 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.56 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.52 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.49 |
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=329.21 Aligned_cols=279 Identities=23% Similarity=0.352 Sum_probs=239.9
Q ss_pred EEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC
Q 008820 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (552)
Q Consensus 246 ~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (552)
..+.+|.++|++++|+ +++|++|+.||+|++||+.+++...++.+|.+.|.+++|+|++. ++++|+.|++|++||+.
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~-~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK-LLASCSADMTIKLWDFQ 180 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSS-EEEEEETTSCCCEEETT
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCC
Confidence 4578999999999999 89999999999999999999999999999999999999998655 88999999999999998
Q ss_pred CCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCC
Q 008820 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRD 401 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~d 401 (552)
+... +..+..+.. .....+++|++++|++|+.|++|++||+++++++..+.+|...|.++.++ +.++++|+.|
T Consensus 181 ~~~~---~~~~~~h~~--~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D 255 (410)
T 1vyh_C 181 GFEC---IRTMHGHDH--NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 255 (410)
T ss_dssp SSCE---EECCCCCSS--CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCce---eEEEcCCCC--CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCC
Confidence 6543 333333332 22345788899999999999999999999999999999999999999999 3499999999
Q ss_pred CcEEEEECCCCceeEEEecCCCCceEEEEEEcCC--------------------CCEEEEEECCCcEEEEeCC--cceee
Q 008820 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAV--------------------QHTLVVSHESGSIKVWRND--KFMKS 459 (552)
Q Consensus 402 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~--------------------~~~l~~g~~dg~i~iwd~~--~~~~~ 459 (552)
++|++||+++++....+..+. ..+.+ ++|+|+ +.++++|+.|+.|++||++ .++..
T Consensus 256 ~~v~vwd~~~~~~~~~~~~h~-~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~ 333 (410)
T 1vyh_C 256 QTVRVWVVATKECKAELREHR-HVVEC-ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 333 (410)
T ss_dssp SCEEEEETTTCCEEEEECCCS-SCEEE-EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred CeEEEEECCCCceeeEecCCC-ceEEE-EEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 999999999999988887653 44444 688886 6789999999999999965 46778
Q ss_pred eecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEEeCCCeEEEEE
Q 008820 460 MQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCADRTVKIAL 535 (552)
Q Consensus 460 ~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~Dg~v~iw~ 535 (552)
+.+|...|.++.| ++++|++|+.||.|++||+.+++....+..+ ...|++++|+++ .|++|+.||+|++|+
T Consensus 334 ~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h-----~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 334 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH-----EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp EECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC-----SSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC-----CCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 8999999999887 7899999999999999999988766655432 667999999964 599999999999998
Q ss_pred ec
Q 008820 536 CN 537 (552)
Q Consensus 536 ~~ 537 (552)
++
T Consensus 409 ~r 410 (410)
T 1vyh_C 409 CR 410 (410)
T ss_dssp --
T ss_pred CC
Confidence 63
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-39 Score=313.10 Aligned_cols=286 Identities=19% Similarity=0.304 Sum_probs=242.2
Q ss_pred CCCeEEEEEeecCccceEEEEEc------CCEEEEEeCCCcEEEEeCCCCeE--EEEEeCCCCCeEEEEEecCCCCEEEE
Q 008820 239 SKGNVKFKDLQGHRDCVTGLAVG------GGFLFSSSFDKSIHVWSLKDFSH--VHTFKGHDHKVMAVVYVDEDQPLCIS 310 (552)
Q Consensus 239 ~~~~~~~~~l~~H~~~V~~l~~s------~~~l~s~s~dg~I~iwd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~~l~s 310 (552)
....+.+..+.+|.++|++++|+ +++|+||+.|++|+|||+.+++. ...+.+|...|.+++|++++. ++++
T Consensus 19 ~~~g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~-~l~s 97 (321)
T 3ow8_A 19 NQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLP-IAAS 97 (321)
T ss_dssp --CEEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSS-EEEE
T ss_pred hhhhheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCC-EEEE
Confidence 44455667789999999999996 46899999999999999987754 457899999999999998654 8899
Q ss_pred EcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEE
Q 008820 311 GDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAV 390 (552)
Q Consensus 311 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 390 (552)
++.|++|++||+.+++....+. .+.. .....+++|++++|++|+.||.|++||+++++....+..|...|.+++|
T Consensus 98 ~s~D~~i~lWd~~~~~~~~~~~---~~~~--~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~ 172 (321)
T 3ow8_A 98 SSLDAHIRLWDLENGKQIKSID---AGPV--DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAY 172 (321)
T ss_dssp EETTSEEEEEETTTTEEEEEEE---CCTT--CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEE
T ss_pred EeCCCcEEEEECCCCCEEEEEe---CCCc--cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEE
Confidence 9999999999998765433332 2211 1123588999999999999999999999999999999999999999999
Q ss_pred e--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecccce
Q 008820 391 C--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGS 466 (552)
Q Consensus 391 ~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~ 466 (552)
+ +.+|++|+.|+.|++||+++++.+..+..+. ..+.+ ++|+|++++|++|+.|+.|++||.+ +....+.+|...
T Consensus 173 spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~-l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~ 250 (321)
T 3ow8_A 173 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHA-MPIRS-LTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASW 250 (321)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS-SCCCE-EEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSC
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccC-CceeE-EEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCc
Confidence 9 3499999999999999999999999887663 44444 6999999999999999999999965 466788999999
Q ss_pred EEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEEeCCCeEEEEEec
Q 008820 467 VFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCADRTVKIALCN 537 (552)
Q Consensus 467 v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~Dg~v~iw~~~ 537 (552)
|.+++| ++.+|++++.|++|++||+.++++...+..+ ...|.+++|+++ .|++++.||.|++||++
T Consensus 251 v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h-----~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 251 VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH-----QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-----SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC-----CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999987 8999999999999999999998877665442 667999999953 59999999999999974
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-38 Score=307.68 Aligned_cols=281 Identities=16% Similarity=0.248 Sum_probs=233.8
Q ss_pred EEEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEe
Q 008820 244 KFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (552)
Q Consensus 244 ~~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 321 (552)
....+.+|.+.|++++|+ +++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++. ++++|+.|+.|++||
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN-YVACGGLDNICSIYN 125 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSS-EEEEEETTCEEEEEE
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCC-EEEEEeCCCeEEEEE
Confidence 356789999999999999 89999999999999999999999999999999999999999665 889999999999999
Q ss_pred CCCCCCCc-cccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEE
Q 008820 322 FSFPLGHE-PLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSG 398 (552)
Q Consensus 322 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~ 398 (552)
+.+..... ....+..+... .....+++++ .+++++.|++|++||+++++.+..+.+|...|.+++|+ +.++++|
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGY--LSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSC--EEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCcceeEEEecCCCcc--EEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 98654322 22233333321 1233455555 58999999999999999999999999999999999999 3499999
Q ss_pred eCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcc--eeeee--cccceEEEEEe--
Q 008820 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF--MKSMQ--THKGSVFAVFL-- 472 (552)
Q Consensus 399 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~--~~~~~--~h~~~v~~v~~-- 472 (552)
+.|++|++||+++++....+..+. ..+.+ ++|+|++++|++|+.||+|++||++.. +..+. .+...|.++.|
T Consensus 203 ~~d~~v~~wd~~~~~~~~~~~~h~-~~v~~-v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 280 (340)
T 1got_B 203 ACDASAKLWDVREGMCRQTFTGHE-SDINA-ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280 (340)
T ss_dssp ETTSCEEEEETTTCSEEEEECCCS-SCEEE-EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred eCCCcEEEEECCCCeeEEEEcCCc-CCEEE-EEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC
Confidence 999999999999999998887763 44555 699999999999999999999997643 33333 23347888876
Q ss_pred cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEEeCCCeEEEEE
Q 008820 473 EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCADRTVKIAL 535 (552)
Q Consensus 473 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~Dg~v~iw~ 535 (552)
++++|++|+.||.|++||+.+.+....+.. +...|.+++|+++ .|++|+.||.|+|||
T Consensus 281 ~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 281 SGRLLLAGYDDFNCNVWDALKADRAGVLAG-----HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEEC-----CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEECCCCeEEEEEcccCcEeeEeec-----CCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 899999999999999999988776655543 2678999999964 499999999999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=301.19 Aligned_cols=280 Identities=18% Similarity=0.281 Sum_probs=233.2
Q ss_pred EEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q 008820 245 FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (552)
Q Consensus 245 ~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 322 (552)
..+|.+|.+.|++++|+ +++|++|+.||+|++||+.+++.+..+..|..+|.+++|+|++. ++++|+.|++|++||+
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKN-WIIVGSDDFRIRVFNY 84 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGT-EEEEEETTSEEEEEET
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCC-EEEEECCCCEEEEEEC
Confidence 45689999999999999 99999999999999999999999999999999999999999655 7899999999999999
Q ss_pred CCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCC-ceeEEecCCCCCeEEEEEeC---CEEEEE
Q 008820 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDG-TLSCTMSGHKSAVSTLAVCN---GVLYSG 398 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~---~~l~s~ 398 (552)
.++.... .+..+.. .....+++|++++|++|+.||+|++||++++ .....+.+|...|.+++|++ ..|++|
T Consensus 85 ~~~~~~~---~~~~h~~--~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg 159 (304)
T 2ynn_A 85 NTGEKVV---DFEAHPD--YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (304)
T ss_dssp TTCCEEE---EEECCSS--CEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred CCCcEEE---EEeCCCC--cEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence 8765433 3333332 1234578899999999999999999999887 55677899999999999983 389999
Q ss_pred eCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcC--CCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEe--
Q 008820 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA--VQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL-- 472 (552)
Q Consensus 399 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~-- 472 (552)
+.|++|++||++++.....+..++...+.. +.++| ++.+|++|+.|++|++||.+ +++..+.+|...|.++.|
T Consensus 160 s~D~~v~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p 238 (304)
T 2ynn_A 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNY-VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238 (304)
T ss_dssp ETTSEEEEEETTCSSCSEEEECCCTTCEEE-EEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred eCCCeEEEEECCCCCccceeccCCcCcEEE-EEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC
Confidence 999999999999888877776655444544 46655 77899999999999999965 467889999999998887
Q ss_pred cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-C---eEEEEeCCCeEEEEEec
Q 008820 473 EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-G---KLFVGCADRTVKIALCN 537 (552)
Q Consensus 473 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~---~l~s~s~Dg~v~iw~~~ 537 (552)
++.+|++|+.||+|++||+.+.++...+... ...+.+++++| + .+++|+ |..+.+|++.
T Consensus 239 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~ 301 (304)
T 2ynn_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-----LERSWCIATHPTGRKNYIASGF-DNGFTVLSLG 301 (304)
T ss_dssp SSSEEEEEETTSCEEEEETTTCCEEEEECCS-----SSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeeeccCC-----CccEEEEEECCCCCceEEEEec-CCceEEEEec
Confidence 8889999999999999999998877665432 55689999885 3 255555 4557777765
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-37 Score=303.13 Aligned_cols=282 Identities=19% Similarity=0.233 Sum_probs=234.6
Q ss_pred EEEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEe
Q 008820 244 KFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (552)
Q Consensus 244 ~~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 321 (552)
....+.+|.+.|++++|+ +++|+||+.||+|++||..+++....+..|...|.+++|+|++. ++++++.|+.+++|+
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~-~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC-AIACGGLDNKCSVYP 134 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSS-EEEEESTTSEEEEEE
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCC-EEEEeeCCCCEEEEE
Confidence 356789999999999999 89999999999999999999999999999999999999999765 789999999999999
Q ss_pred CCCCCCCc---cccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe----CCE
Q 008820 322 FSFPLGHE---PLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC----NGV 394 (552)
Q Consensus 322 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~----~~~ 394 (552)
+....... .......+.. .....+++++++.|++|+.|++|++||+++++++..+.+|...|.+++++ +++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTN--YLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSS--CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCC--cEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 87543221 1122222222 22345778888999999999999999999999999999999999999997 249
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcc--eeeeec--ccceEEEE
Q 008820 395 LYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF--MKSMQT--HKGSVFAV 470 (552)
Q Consensus 395 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~--h~~~v~~v 470 (552)
|++|+.||+|++||+++++++..+..+. ..+.+ ++|+|++++|++|+.|++|++||++.. ...+.. +...+.++
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~-~~v~~-v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~ 290 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQCVQAFETHE-SDVNS-VRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSV 290 (354)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCS-SCEEE-EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCC-CCeEE-EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEE
Confidence 9999999999999999999998887663 44555 699999999999999999999997653 333333 33467777
Q ss_pred Ee--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEEeCCCeEEEEE
Q 008820 471 FL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCADRTVKIAL 535 (552)
Q Consensus 471 ~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~Dg~v~iw~ 535 (552)
.| ++.+|++|+.|+.|++||+.+++....+.. +...|++++|+|+ .|++|+.||+|++|+
T Consensus 291 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~-----h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 291 DFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG-----HENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCSEEEEECC-----CSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEeCCCCEEEEEECCCcEEEEECCCCceEEEEEC-----CCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 66 899999999999999999988766554433 3678999999964 499999999999996
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-38 Score=309.53 Aligned_cols=285 Identities=17% Similarity=0.187 Sum_probs=220.7
Q ss_pred eecCccceEEEEEc--CCEEEEEeC------CCcEEEEeCCCCeEE----EEEeCCCCCeEEEEEecCCCCEEEEEcCCC
Q 008820 248 LQGHRDCVTGLAVG--GGFLFSSSF------DKSIHVWSLKDFSHV----HTFKGHDHKVMAVVYVDEDQPLCISGDSGG 315 (552)
Q Consensus 248 l~~H~~~V~~l~~s--~~~l~s~s~------dg~I~iwd~~~~~~~----~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg 315 (552)
..+|++.|++++|+ |++|++|+. |++|++|+..++... ....+|...|.+++|+|++ .+++++.||
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~--~~l~~s~dg 115 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK--GILVASDSG 115 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT--EEEEEETTS
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC--CEEEEECCC
Confidence 35799999999999 999999997 788999998776542 3345689999999999975 356788899
Q ss_pred cEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-C--
Q 008820 316 GIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-N-- 392 (552)
Q Consensus 316 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~-- 392 (552)
+|++||+.+++...........+. ......+++|++++|++|+.||.|++||+++++++..+.+|...|++++|+ +
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~-~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~ 194 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHD-DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD 194 (357)
T ss_dssp CEEEC--------CCCCEEECCCS-SCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS
T ss_pred EEEEeeccccceeEEEeeccCCCC-CCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC
Confidence 999999987654433222111111 122345788999999999999999999999999999999999999999998 2
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCC-CCEEEEEECCCcEEEEeCC--cceeeeecccceEEE
Q 008820 393 GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAV-QHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFA 469 (552)
Q Consensus 393 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~ 469 (552)
.++++++.|++|++||+++++....+...........++|+|+ +.++++|+.|+.|++||++ +....+.+|...|.+
T Consensus 195 ~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 274 (357)
T 4g56_B 195 TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITG 274 (357)
T ss_dssp SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEE
T ss_pred ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEE
Confidence 3899999999999999999988776654433333444689987 5689999999999999965 467888999999999
Q ss_pred EEe--cC-CEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC---CeEEEEeCCCeEEEEEecCCcc
Q 008820 470 VFL--EG-KWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ---GKLFVGCADRTVKIALCNRQIP 541 (552)
Q Consensus 470 v~~--~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~s~s~Dg~v~iw~~~~~~~ 541 (552)
+.| ++ ++|++|+.|++|++||++++++..... +...|++++|+| ..|++|+.||+|++|+++...+
T Consensus 275 l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~------H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 275 LAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS------HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTSCEEEEECC------CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECC------CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 987 54 689999999999999999887765532 367899999985 3599999999999999975443
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-38 Score=307.78 Aligned_cols=278 Identities=17% Similarity=0.194 Sum_probs=219.5
Q ss_pred cCccceEEEEEc--CCEEEEEeCCCcEEEEeCCC-----------CeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCc
Q 008820 250 GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD-----------FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGG 316 (552)
Q Consensus 250 ~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~-----------~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~ 316 (552)
.|...|.+++|+ |++|++++ |+++|+||... .........|...|.+++|+|++ .+++|+.||+
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~l~~~s~dg~ 104 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER--GILVASDSGA 104 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT--EEEEEETTSE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC--eEEEEECCCE
Confidence 577889999999 88888887 77888887321 01111222356789999999964 5789999999
Q ss_pred EEEEeCCCCCCCccccccc-cCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-C--
Q 008820 317 IFVWSFSFPLGHEPLKKWN-EEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-N-- 392 (552)
Q Consensus 317 i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~-- 392 (552)
|++||+++++......... .|.. . ....+|++++++|++|+.||+|++||+++++++..+.+|...|++++|+ +
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~-~-V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~ 182 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDD-I-VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD 182 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSS-C-EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCT
T ss_pred EEEEeccCCCceeEeeccccCCCC-C-EEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCC
Confidence 9999999876554433222 2222 2 2345788999999999999999999999999999999999999999998 3
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcC-CCCEEEEEECCCcEEEEeCC--cceeeeecccceEEE
Q 008820 393 GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA-VQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFA 469 (552)
Q Consensus 393 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~ 469 (552)
.++++++.|++|++||+++++....+.....+.....++++| +++++++|+.||.|++||.+ +++..+.+|...|.+
T Consensus 183 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~ 262 (344)
T 4gqb_B 183 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTG 262 (344)
T ss_dssp TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEE
T ss_pred CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEE
Confidence 378999999999999999999888876544444444468887 46789999999999999965 578889999999999
Q ss_pred EEe--cC-CEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-C--eEEEEeCCCeEEEEEecC
Q 008820 470 VFL--EG-KWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-G--KLFVGCADRTVKIALCNR 538 (552)
Q Consensus 470 v~~--~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~--~l~s~s~Dg~v~iw~~~~ 538 (552)
+.| ++ ++|++|+.|++|++||+.++++.... .|...|++++|+| + .|++|+.||+|++|+++.
T Consensus 263 v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~------~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 263 LVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQ------AHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTCCEEEEEC------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred EEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEc------CCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 987 55 58999999999999999988765432 2367799999995 2 367899999999999974
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-37 Score=297.54 Aligned_cols=284 Identities=21% Similarity=0.365 Sum_probs=237.9
Q ss_pred eEEEEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEE
Q 008820 242 NVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFV 319 (552)
Q Consensus 242 ~~~~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~v 319 (552)
......+.+|.+.|++++|+ +++|++|+.||.|++|++.+++....+.+|...|.+++|+|++ .++++++.|+.|++
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~v 91 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKI 91 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCC-CEEEEECCCCEEEE
Confidence 34567799999999999999 8999999999999999999999999999999999999999965 58899999999999
Q ss_pred EeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEE
Q 008820 320 WSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYS 397 (552)
Q Consensus 320 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s 397 (552)
||++++.... .+..+.. .....+++++++++++|+.||.|++||+++++.+..+..|..+|.+++|+ +.++++
T Consensus 92 wd~~~~~~~~---~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 166 (312)
T 4ery_A 92 WDVSSGKCLK---TLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 166 (312)
T ss_dssp EETTTCCEEE---EEECCSS--CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EECCCCcEEE---EEcCCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEE
Confidence 9998765333 2333322 12345788899999999999999999999999999999999999999999 349999
Q ss_pred EeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeeecccceEEE----EE
Q 008820 398 GSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFA----VF 471 (552)
Q Consensus 398 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~h~~~v~~----v~ 471 (552)
++.||.|++||+++++.+..+...+...+.. ++|+|+++++++++.||.|++||+.+ ....+.+|.....+ ..
T Consensus 167 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
T 4ery_A 167 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSF-VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 245 (312)
T ss_dssp EETTSCEEEEETTTCCEEEEECCSSCCCEEE-EEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEE
T ss_pred EeCCCcEEEEECCCCceeeEEeccCCCceEE-EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEE
Confidence 9999999999999999888876655444544 79999999999999999999999764 56677777654322 22
Q ss_pred e-cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEEe--CCCeEEEEEec
Q 008820 472 L-EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGC--ADRTVKIALCN 537 (552)
Q Consensus 472 ~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s--~Dg~v~iw~~~ 537 (552)
+ ++.+|++|+.||.|++||+.+++....+..+ ...|.+++|+|+ .+++++ .|+.|++|+.+
T Consensus 246 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-----~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CSSSCEEEECCTTSCEEEEETTTCCEEEEECCC-----SSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred eCCCcEEEEECCCCEEEEEECCCchhhhhhhcc-----CCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 2 7889999999999999999988776665443 667999999963 478776 69999999975
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=310.43 Aligned_cols=293 Identities=22% Similarity=0.280 Sum_probs=233.9
Q ss_pred CeEEEEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEE
Q 008820 241 GNVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIF 318 (552)
Q Consensus 241 ~~~~~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~ 318 (552)
.......|.||.+.|++++|+ +++|+||+.||+|+|||+.+++....+..|...|.+++|+|++. ++++|+.|+.++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~-~las~~~d~~v~ 133 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ-SVACGGLDSACS 133 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSS-EEEECCSSSCCE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCC-EEEEeeCCCcEE
Confidence 344678899999999999999 89999999999999999999999999999999999999999765 789999999999
Q ss_pred EEeCCCCCCC----ccccccccCCCceeeeEEEEeeC-CCEEEEeeCCCcEEEEECCCCceeEEe-----cCCCCCeEEE
Q 008820 319 VWSFSFPLGH----EPLKKWNEEKDWRYSGIHALTTS-GRYLYTGSGDRTIKAWSLLDGTLSCTM-----SGHKSAVSTL 388 (552)
Q Consensus 319 vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~l 388 (552)
+||+.+.... .....+..+... .. ...+.++ +..|++|+.|++|++||+++++.+..+ .+|...|.++
T Consensus 134 iw~~~~~~~~~~~~~~~~~~~gh~~~-v~-~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~ 211 (380)
T 3iz6_a 134 IFNLSSQADRDGNMPVSRVLTGHKGY-AS-SCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211 (380)
T ss_dssp EEECCCCSSCCCSSTTCCBCCCCSSC-CC-CCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEE
T ss_pred EEECCCCccccCCccceeeccCCCcc-eE-EEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEE
Confidence 9999754321 122223333321 11 2244554 457999999999999999999998877 6799999999
Q ss_pred EEe---CCEEEEEeCCCcEEEEECC-CCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeeec
Q 008820 389 AVC---NGVLYSGSRDGTIRLWSLS-DHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQT 462 (552)
Q Consensus 389 ~~~---~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~ 462 (552)
+++ ++++++|+.|++|++||++ .++.+..+..| .+.+.+ ++|+|++++|++|+.||+|++||+++ .+..+..
T Consensus 212 ~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h-~~~v~~-v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 289 (380)
T 3iz6_a 212 SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGH-EGDINS-VKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289 (380)
T ss_dssp EECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCC-SSCCCE-EEECTTSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred EeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCc-CCCeEE-EEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence 997 3599999999999999998 45677777765 455555 69999999999999999999999764 3444443
Q ss_pred cc-------ceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEEeCCCeE
Q 008820 463 HK-------GSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCADRTV 531 (552)
Q Consensus 463 h~-------~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~Dg~v 531 (552)
+. ..|.+++| +|++|++|+.||.|++||+..++........ ...+...|++++|+++ .|++|+.||+|
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~sgs~D~~i 368 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL-QNSHEGRISCLGLSSDGSALCTGSWDKNL 368 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS-CSSCCCCCCEEEECSSSSEEEEECTTSCE
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecc-cCCCCCceEEEEECCCCCEEEEeeCCCCE
Confidence 32 23666665 8999999999999999999887665544221 1124678999999953 59999999999
Q ss_pred EEEEecCC
Q 008820 532 KIALCNRQ 539 (552)
Q Consensus 532 ~iw~~~~~ 539 (552)
++|++...
T Consensus 369 ~iW~~~~~ 376 (380)
T 3iz6_a 369 KIWAFSGH 376 (380)
T ss_dssp EEEECCSS
T ss_pred EEEecCCC
Confidence 99999743
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=322.40 Aligned_cols=324 Identities=15% Similarity=0.190 Sum_probs=256.4
Q ss_pred CCCccccceeeecCcc-eEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeE
Q 008820 217 SDGADIDQARAAGGVK-DLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSH 284 (552)
Q Consensus 217 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~ 284 (552)
.+...+..+.+.+.+. .++++..++.+++|+ +.+|.+.|++++|+ +++|++|+.|++|++||+.+++.
T Consensus 145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~ 224 (611)
T 1nr0_A 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK 224 (611)
T ss_dssp CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE
Confidence 3445688889988876 599999999999886 57899999999999 89999999999999999999999
Q ss_pred EEEEe-------CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEE
Q 008820 285 VHTFK-------GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYT 357 (552)
Q Consensus 285 ~~~~~-------~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 357 (552)
+..+. +|.+.|.+++|+|++. +|++++.|++|++||+.+++....+...... ......+.++++.+++
T Consensus 225 ~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~s 299 (611)
T 1nr0_A 225 TGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRI----EDQQLGIIWTKQALVS 299 (611)
T ss_dssp EEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSG----GGCEEEEEECSSCEEE
T ss_pred eeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCc----cceeEEEEEcCCEEEE
Confidence 98884 7999999999999665 7899999999999999876543333211111 1123345558889999
Q ss_pred eeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCC-------------
Q 008820 358 GSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDS------------- 422 (552)
Q Consensus 358 gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------- 422 (552)
++.|+.+++||..++++...+.+|...|++++|+ +.+|++++.|++|++||+.+++....+...+
T Consensus 300 ~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~ 379 (611)
T 1nr0_A 300 ISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 379 (611)
T ss_dssp EETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS
T ss_pred EeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCC
Confidence 9999999999999999888999999999999999 3499999999999999998765433220000
Q ss_pred ------------------------------------------C-------------------------CceEEEEEEcCC
Q 008820 423 ------------------------------------------S-------------------------GAVSSVLSLTAV 435 (552)
Q Consensus 423 ------------------------------------------~-------------------------~~~~~~~~~s~~ 435 (552)
. ......++|+|+
T Consensus 380 ~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spd 459 (611)
T 1nr0_A 380 DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSND 459 (611)
T ss_dssp CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTT
T ss_pred cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCC
Confidence 0 001234689999
Q ss_pred CCEEEEEECCCcEEEEeCCcc----eeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCC-CeeeeeeccCCCccc
Q 008820 436 QHTLVVSHESGSIKVWRNDKF----MKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAG-DEFEEDVIPTGAIPC 508 (552)
Q Consensus 436 ~~~l~~g~~dg~i~iwd~~~~----~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~-~~~~~~~~~~~~~~~ 508 (552)
+++|++|+.|++|++||+... ... .+|...|.+++| +|++|++++.|++|++||+.+ +++...... ..|
T Consensus 460 g~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~---~~H 535 (611)
T 1nr0_A 460 KQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSW---TFH 535 (611)
T ss_dssp SCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCC---CCC
T ss_pred CCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeee---eec
Confidence 999999999999999996532 233 679999999987 999999999999999999986 444322111 114
Q ss_pred CcceEEEEEeCC--eEEEEeCCCeEEEEEecCCccee-EEEecc
Q 008820 509 GSVITALLYWQG--KLFVGCADRTVKIALCNRQIPEI-FSLLLH 549 (552)
Q Consensus 509 ~~~v~~l~~~~~--~l~s~s~Dg~v~iw~~~~~~~~~-~~~~gh 549 (552)
...|.+++|+|+ .|++|+.|++|++|+++.....+ ..+.+|
T Consensus 536 ~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h 579 (611)
T 1nr0_A 536 TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH 579 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSS
T ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccC
Confidence 778999999963 59999999999999998544333 556677
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=295.56 Aligned_cols=288 Identities=19% Similarity=0.259 Sum_probs=221.0
Q ss_pred EEEEeecCccceEEEEEcCCEEEEEeCCCcEEEEeCCCC--eEEEEE-eC-CCCCeEEEEEecCCCCEEEEEcCCCcEEE
Q 008820 244 KFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDF--SHVHTF-KG-HDHKVMAVVYVDEDQPLCISGDSGGGIFV 319 (552)
Q Consensus 244 ~~~~l~~H~~~V~~l~~s~~~l~s~s~dg~I~iwd~~~~--~~~~~~-~~-h~~~v~~v~~~~~~~~~l~s~~~dg~i~v 319 (552)
.+..+.+|.++|++++|++++|++|+.|++|++||+.++ +....+ .+ |...|.+++|+|++ .+|++|+.|++|++
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~v~i 84 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSFDSTVSI 84 (330)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred cceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC-CEEEEEeCCCcEEE
Confidence 567899999999999999779999999999999999875 556666 44 99999999999975 48899999999999
Q ss_pred EeCCCCCC----CccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCC----CceeEEecCCCCCeEEEEEe
Q 008820 320 WSFSFPLG----HEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLD----GTLSCTMSGHKSAVSTLAVC 391 (552)
Q Consensus 320 wd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~ 391 (552)
||+..... ......+..+.. .....+|+|++++|++|+.|++|++||++. .+++..+.+|...|.+++|+
T Consensus 85 w~~~~~~~~~~~~~~~~~~~~h~~--~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 85 WAKEESADRTFEMDLLAIIEGHEN--EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp EEC-------CCCEEEEEEC------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred EEcccCcCccccceeEEEEcCCCC--cEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 99864321 122233333332 223457888999999999999999999943 25677889999999999999
Q ss_pred --CCEEEEEeCCCcEEEEECCCC--ceeEEEecCCCCceEEEEEEcCC--CCEEEEEECCCcEEEEeCCc----------
Q 008820 392 --NGVLYSGSRDGTIRLWSLSDH--SLLTVLEEDSSGAVSSVLSLTAV--QHTLVVSHESGSIKVWRNDK---------- 455 (552)
Q Consensus 392 --~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~g~~dg~i~iwd~~~---------- 455 (552)
+.+|++++.|++|++||.+++ +++..+..| .+.+.+ +.|+|+ +..|++|+.|++|++||...
T Consensus 163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h-~~~v~~-~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGH-EGTVWS-SDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEE-EEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCC-CCcEEE-EEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 349999999999999999876 566777665 455555 689998 77899999999999999642
Q ss_pred ceeeeec-ccceEEEEEe-cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCc-ceEEEEEeC---C-eEEEEeCC
Q 008820 456 FMKSMQT-HKGSVFAVFL-EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGS-VITALLYWQ---G-KLFVGCAD 528 (552)
Q Consensus 456 ~~~~~~~-h~~~v~~v~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~---~-~l~s~s~D 528 (552)
....+.. |...|.++.| ++.+|++++.||.|++||..+++........ ..+.. .|.+++|++ + .|++|+.|
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~--~~h~~~~v~~v~~~~~~~~~~las~s~D 318 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRA--LCHGVYEINVVKWLELNGKTILATGGDD 318 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEES--CTTTTSCEEEEEEC-----CCEEEEETT
T ss_pred EeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccc--cccccceEEEEEEecCCCceEEEEecCC
Confidence 2334444 8999999998 5668999999999999999876432211110 01233 799999986 2 49999999
Q ss_pred CeEEEEEecC
Q 008820 529 RTVKIALCNR 538 (552)
Q Consensus 529 g~v~iw~~~~ 538 (552)
|+|++|+++.
T Consensus 319 g~v~~W~~~~ 328 (330)
T 2hes_X 319 GIVNFWSLEK 328 (330)
T ss_dssp SEEEEEEC--
T ss_pred CcEEEEEecc
Confidence 9999999863
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=295.90 Aligned_cols=293 Identities=18% Similarity=0.212 Sum_probs=228.2
Q ss_pred CeEEEEEeecCcc-ceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEE--E-EeCCCCCeEEEEEecCCCCEEEEEcCC
Q 008820 241 GNVKFKDLQGHRD-CVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVH--T-FKGHDHKVMAVVYVDEDQPLCISGDSG 314 (552)
Q Consensus 241 ~~~~~~~l~~H~~-~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~--~-~~~h~~~v~~v~~~~~~~~~l~s~~~d 314 (552)
.-..+..+.+|.+ .|++++|+ +++|++|+.|++|+|||+.++.... . ..+|...|.+++|+|++. +|++|+.|
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~s~D 82 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN-YLASASFD 82 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS-EEEEEETT
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC-EEEEEECC
Confidence 3456788999988 99999999 9999999999999999998876432 2 268999999999999655 88999999
Q ss_pred CcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCc---eeEEecCCCCCeEEEEEe
Q 008820 315 GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT---LSCTMSGHKSAVSTLAVC 391 (552)
Q Consensus 315 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~~ 391 (552)
+++++||+..... ..+..+..+.. .....+++|++++|++|+.|++|++||++++. ++..+.+|...|.+++|+
T Consensus 83 ~~v~iw~~~~~~~-~~~~~~~~h~~--~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 159 (345)
T 3fm0_A 83 ATTCIWKKNQDDF-ECVTTLEGHEN--EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH 159 (345)
T ss_dssp SCEEEEEECCC-E-EEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC
T ss_pred CcEEEEEccCCCe-EEEEEccCCCC--CceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC
Confidence 9999999875431 22333333332 12345788899999999999999999998763 466788999999999999
Q ss_pred --CCEEEEEeCCCcEEEEECCCCce--eEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc------------
Q 008820 392 --NGVLYSGSRDGTIRLWSLSDHSL--LTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK------------ 455 (552)
Q Consensus 392 --~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~------------ 455 (552)
+.+|++++.|++|++||.++++. ...+..| ...+.+ ++|+|++++|++|+.|++|++||...
T Consensus 160 p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h-~~~v~~-l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~ 237 (345)
T 3fm0_A 160 PSQELLASASYDDTVKLYREEEDDWVCCATLEGH-ESTVWS-LAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGS 237 (345)
T ss_dssp SSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC-SSCEEE-EEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred CCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC-CCceEE-EEECCCCCEEEEEeCCCeEEEeccccCCCCccceeecc
Confidence 34999999999999999988764 3455554 455555 69999999999999999999998421
Q ss_pred -----ceeeeec-ccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeee----eeccCCCcccCcceEEEEEeCC---
Q 008820 456 -----FMKSMQT-HKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEE----DVIPTGAIPCGSVITALLYWQG--- 520 (552)
Q Consensus 456 -----~~~~~~~-h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~v~~l~~~~~--- 520 (552)
++..+.+ |...|.++.| ++..|++++.|+.|++|+........ .........+...|++++|+|+
T Consensus 238 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 317 (345)
T 3fm0_A 238 DPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPG 317 (345)
T ss_dssp -CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTT
T ss_pred CCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCce
Confidence 1223343 8889999988 78899999999999999987542111 0110001124678999999963
Q ss_pred eEEEEeCCCeEEEEEecCC
Q 008820 521 KLFVGCADRTVKIALCNRQ 539 (552)
Q Consensus 521 ~l~s~s~Dg~v~iw~~~~~ 539 (552)
.|++|+.||+|++|++...
T Consensus 318 ~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 318 LLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp EEEEEETTSCEEEEEECC-
T ss_pred EEEEcCCCCcEEEEEecCC
Confidence 6999999999999999843
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=305.51 Aligned_cols=267 Identities=23% Similarity=0.426 Sum_probs=234.2
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEE
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVH 286 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~ 286 (552)
+...+..+.+.+.+..++++..++.+++|+ +.+|.+.|++++|+ +++|++|+.|++|++||+.+++++.
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~ 186 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR 186 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE
Confidence 445688999999999999999999999997 56899999999999 8999999999999999999999999
Q ss_pred EEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEE
Q 008820 287 TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKA 366 (552)
Q Consensus 287 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~i 366 (552)
++.+|...|.+++|+|++. ++++|+.|++|++||+.++... ..+..+... .....++++++++++|+.|++|++
T Consensus 187 ~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~---~~~~~h~~~--v~~~~~~~~g~~l~s~s~D~~v~v 260 (410)
T 1vyh_C 187 TMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCV---KTFTGHREW--VRMVRPNQDGTLIASCSNDQTVRV 260 (410)
T ss_dssp CCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEE---EEEECCSSC--EEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEE---EEEeCCCcc--EEEEEECCCCCEEEEEcCCCeEEE
Confidence 9999999999999999655 7899999999999999876543 333333322 233567888999999999999999
Q ss_pred EECCCCceeEEecCCCCCeEEEEEeC---------------------C-EEEEEeCCCcEEEEECCCCceeEEEecCCCC
Q 008820 367 WSLLDGTLSCTMSGHKSAVSTLAVCN---------------------G-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSG 424 (552)
Q Consensus 367 wd~~~~~~~~~~~~h~~~v~~l~~~~---------------------~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 424 (552)
||+.++++...+.+|...|.+++|++ + ++++|+.|++|++||+++++++..+..| ..
T Consensus 261 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h-~~ 339 (410)
T 1vyh_C 261 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DN 339 (410)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC-SS
T ss_pred EECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC-CC
Confidence 99999999999999999999999983 2 7999999999999999999999998876 34
Q ss_pred ceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecC
Q 008820 425 AVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 425 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~ 492 (552)
.+.+ ++|+|++++|++|+.||.|++||.. +++..+.+|...|.++.| ++.+|++|+.||+|++|+++
T Consensus 340 ~v~~-v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 340 WVRG-VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEE-EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred cEEE-EEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 5555 6999999999999999999999964 567889999999999988 78899999999999999863
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=289.29 Aligned_cols=283 Identities=21% Similarity=0.355 Sum_probs=228.4
Q ss_pred EEEEeecCccceEEEEEc---CCEEEEEeCCCcEEEEeCCC-----CeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCC
Q 008820 244 KFKDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKD-----FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGG 315 (552)
Q Consensus 244 ~~~~l~~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~-----~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg 315 (552)
...+|.||.++|++++|+ +++|+||+.|++|++||+.+ +.++..+.+|...|.+++|+|++. ++++|+.|+
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~s~s~D~ 87 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA-YALSASWDK 87 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC-EEEEEeCCC
Confidence 345799999999999998 47999999999999999853 346788999999999999999655 789999999
Q ss_pred cEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCC--
Q 008820 316 GIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNG-- 393 (552)
Q Consensus 316 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-- 393 (552)
+|++||+.+++.. ..+..+... ....+++++++++++|+.|++|++||++ ++++..+.+|...|.++.+.+.
T Consensus 88 ~v~~wd~~~~~~~---~~~~~h~~~--v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 88 TLRLWDVATGETY---QRFVGHKSD--VMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp EEEEEETTTTEEE---EEEECCSSC--EEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC--
T ss_pred EEEEEECCCCCee---EEEccCCCc--EEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCC
Confidence 9999999876433 333333321 2234678888999999999999999985 5677888999999999999731
Q ss_pred ------EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeeecccc
Q 008820 394 ------VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKG 465 (552)
Q Consensus 394 ------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~h~~ 465 (552)
.+++++.|++|++||+++++....+..| ...+.+ ++++|++++|++|+.||.|++||+.. .+..+.. ..
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h-~~~v~~-~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~ 238 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH-NSNINT-LTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QD 238 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEEEEECCC-CSCEEE-EEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CS
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhheeecCC-CCcEEE-EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CC
Confidence 7999999999999999999888888766 345555 69999999999999999999999764 4555554 45
Q ss_pred eEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCC---CcccCcceEEEEEeCC--eEEEEeCCCeEEEEEec
Q 008820 466 SVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTG---AIPCGSVITALLYWQG--KLFVGCADRTVKIALCN 537 (552)
Q Consensus 466 ~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~v~~l~~~~~--~l~s~s~Dg~v~iw~~~ 537 (552)
.|.++.| ++.+|++++. +.+++|++............. ...+...+.+++|+|+ .|++|+.||.|++|++.
T Consensus 239 ~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp CEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred cEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 7888876 8889988875 469999998776554433221 1123556899999963 59999999999999986
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=301.30 Aligned_cols=298 Identities=21% Similarity=0.325 Sum_probs=253.7
Q ss_pred ecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEE
Q 008820 228 AGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAV 298 (552)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v 298 (552)
...++.++++..++.+.+|+ +.+|.+.|++++|+++++++|+.||+|++||+.+++.+..+.+|...|.++
T Consensus 126 ~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 205 (445)
T 2ovr_B 126 QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM 205 (445)
T ss_dssp EEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred EEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEE
Confidence 33568899999999999887 568999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008820 299 VYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM 378 (552)
Q Consensus 299 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~ 378 (552)
.|++ ..+++|+.||+|++||+.+++....+ ..+. ..+.++.++++.+++|+.||.|++||+++++++..+
T Consensus 206 ~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~----~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 275 (445)
T 2ovr_B 206 HLHE---KRVVSGSRDATLRVWDIETGQCLHVL---MGHV----AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL 275 (445)
T ss_dssp EEET---TEEEEEETTSEEEEEESSSCCEEEEE---ECCS----SCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEE
T ss_pred EecC---CEEEEEeCCCEEEEEECCCCcEEEEE---cCCc----ccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEe
Confidence 9953 47899999999999999876543332 2222 245567778999999999999999999999999999
Q ss_pred cCCCCCeEEEEEeCCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cc
Q 008820 379 SGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KF 456 (552)
Q Consensus 379 ~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~ 456 (552)
.+|...|.++.|.+..+++++.|+.|++||+++++.+..+..+. ..+. ++.++++++++|+.||.|++||.+ +.
T Consensus 276 ~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~v~---~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 351 (445)
T 2ovr_B 276 QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTS---GMELKDNILVSGNADSTVKIWDIKTGQC 351 (445)
T ss_dssp CCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCC-SCEE---EEEEETTEEEEEETTSCEEEEETTTCCE
T ss_pred cCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCc-ccEE---EEEEeCCEEEEEeCCCeEEEEECCCCcE
Confidence 99999999999977799999999999999999999998887653 3332 444568899999999999999965 45
Q ss_pred eeeeec---ccceEEEEEecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCe--EEEEeCCCe-
Q 008820 457 MKSMQT---HKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK--LFVGCADRT- 530 (552)
Q Consensus 457 ~~~~~~---h~~~v~~v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~s~s~Dg~- 530 (552)
+..+.. |...|.++.+++++|++|+.||.|++||+.+++....+.......+...|.+++|+|+. +++|+.||+
T Consensus 352 ~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~ 431 (445)
T 2ovr_B 352 LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE 431 (445)
T ss_dssp EEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSS
T ss_pred EEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCC
Confidence 666665 88999999999999999999999999999998877666433333457789999999754 789999997
Q ss_pred ---EEEEEecCC
Q 008820 531 ---VKIALCNRQ 539 (552)
Q Consensus 531 ---v~iw~~~~~ 539 (552)
|.+||++..
T Consensus 432 ~~~l~v~df~~~ 443 (445)
T 2ovr_B 432 ETKLLVLDFDVD 443 (445)
T ss_dssp CCEEEEEECCCC
T ss_pred ccEEEEEECCCC
Confidence 999999854
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=289.33 Aligned_cols=267 Identities=20% Similarity=0.325 Sum_probs=229.0
Q ss_pred CCccccceeeecC----cceEEEeeCCCeEEEEE-----------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCC
Q 008820 218 DGADIDQARAAGG----VKDLVNGLSKGNVKFKD-----------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK 280 (552)
Q Consensus 218 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-----------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~ 280 (552)
+...+..+.+++. +..++++..++.+++|+ +.+|...|.+++|+ +.++++++.|++|++||+.
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~ 110 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 3445777777653 56799999999999886 56899999999999 8899999999999999999
Q ss_pred CCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeC
Q 008820 281 DFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG 360 (552)
Q Consensus 281 ~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~ 360 (552)
+++.+..+..|...+.+++|+|++. ++++++.||.|++||++++.....+. .+. ......+++|++++|++|+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~---~~~--~~v~~~~~spdg~~lasg~~ 184 (321)
T 3ow8_A 111 NGKQIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLD---TRG--KFILSIAYSPDGKYLASGAI 184 (321)
T ss_dssp TTEEEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEE---CSS--SCEEEEEECTTSSEEEEEET
T ss_pred CCCEEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEec---CCC--ceEEEEEECCCCCEEEEEcC
Confidence 9999999999999999999999765 78999999999999998765433222 221 12234578999999999999
Q ss_pred CCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCE
Q 008820 361 DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHT 438 (552)
Q Consensus 361 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 438 (552)
||.|++||+++++.+..+.+|..+|++++|+ +.+|++|+.|++|++||+++++....+..+. ..+.. ++|+|++.+
T Consensus 185 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~v~~-~~~sp~~~~ 262 (321)
T 3ow8_A 185 DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA-SWVLN-VAFCPDDTH 262 (321)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS-SCEEE-EEECTTSSE
T ss_pred CCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC-CceEE-EEECCCCCE
Confidence 9999999999999999999999999999999 3499999999999999999999988887763 44555 699999999
Q ss_pred EEEEECCCcEEEEeCC--cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecC
Q 008820 439 LVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 439 l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~ 492 (552)
|++++.|++|++||++ +++..+.+|...|.++.| ++++|++++.||.|++||..
T Consensus 263 l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 263 FVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999965 567788899999999988 78999999999999999963
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-35 Score=310.62 Aligned_cols=304 Identities=16% Similarity=0.184 Sum_probs=244.7
Q ss_pred cccceeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCC--eEEEE
Q 008820 221 DIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF--SHVHT 287 (552)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~--~~~~~ 287 (552)
....+.++++++.++++. ++.+.+|+ +.+|.+.|++++|+ |++||+|+.|++|+|||+.++ .....
T Consensus 20 ~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~ 98 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTT 98 (611)
T ss_dssp CCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEE
T ss_pred ceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEe
Confidence 355677888888888876 45778876 56899999999999 999999999999999998754 45667
Q ss_pred EeCCCCCeEEEEEecCCCCEEEEEcCC----CcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCC-EEEEeeCCC
Q 008820 288 FKGHDHKVMAVVYVDEDQPLCISGDSG----GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDR 362 (552)
Q Consensus 288 ~~~h~~~v~~v~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~dg 362 (552)
+.+|.+.|.+++|+|++..+ ++++.+ +.|++||.. .. ...+..+.. .....+|+|++. .|++|+.|+
T Consensus 99 ~~~~~~~v~~v~fs~dg~~l-~~~~~~~~~~~~v~~wd~~--~~---~~~l~gh~~--~v~~v~f~p~~~~~l~s~s~D~ 170 (611)
T 1nr0_A 99 IPVFSGPVKDISWDSESKRI-AAVGEGRERFGHVFLFDTG--TS---NGNLTGQAR--AMNSVDFKPSRPFRIISGSDDN 170 (611)
T ss_dssp EECSSSCEEEEEECTTSCEE-EEEECCSSCSEEEEETTTC--CB---CBCCCCCSS--CEEEEEECSSSSCEEEEEETTS
T ss_pred ecccCCceEEEEECCCCCEE-EEEECCCCceeEEEEeeCC--CC---cceecCCCC--CceEEEECCCCCeEEEEEeCCC
Confidence 89999999999999987754 555543 478888743 22 223333332 223457888876 699999999
Q ss_pred cEEEEECCCCceeEEecCCCCCeEEEEEe-C-CEEEEEeCCCcEEEEECCCCceeEEEec------CCCCceEEEEEEcC
Q 008820 363 TIKAWSLLDGTLSCTMSGHKSAVSTLAVC-N-GVLYSGSRDGTIRLWSLSDHSLLTVLEE------DSSGAVSSVLSLTA 434 (552)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~s~ 434 (552)
+|++||..++++...+.+|...|++++|+ + .+|++++.|++|++||+.+++.+..+.. .|.+.+.+ ++|+|
T Consensus 171 ~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~-v~~sp 249 (611)
T 1nr0_A 171 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG-LTWSP 249 (611)
T ss_dssp CEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEE-EEECT
T ss_pred eEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEE-EEECC
Confidence 99999999999999999999999999999 3 4999999999999999999998888743 34556666 69999
Q ss_pred CCCEEEEEECCCcEEEEeCCc--c-------------------------------------------eeeeecccceEEE
Q 008820 435 VQHTLVVSHESGSIKVWRNDK--F-------------------------------------------MKSMQTHKGSVFA 469 (552)
Q Consensus 435 ~~~~l~~g~~dg~i~iwd~~~--~-------------------------------------------~~~~~~h~~~v~~ 469 (552)
++++|++++.|++|++||..+ . ...+.+|...|.+
T Consensus 250 dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~ 329 (611)
T 1nr0_A 250 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITA 329 (611)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEE
Confidence 999999999999999999653 1 1234579999999
Q ss_pred EEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-CeEEEEeCCCeEEEEEecC
Q 008820 470 VFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-GKLFVGCADRTVKIALCNR 538 (552)
Q Consensus 470 v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~s~s~Dg~v~iw~~~~ 538 (552)
+++ ++++|++++.|++|++||+.++........ .+...|.+++|++ +.+++++.|+.+++|+...
T Consensus 330 l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~----~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~ 397 (611)
T 1nr0_A 330 LSSSADGKTLFSADAEGHINSWDISTGISNRVFPD----VHATMITGIKTTSKGDLFTVSWDDHLKVVPAGG 397 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC----SCSSCEEEEEECTTSCEEEEETTTEEEEECSSS
T ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCceeeeccc----CCcceEEEEEECCCCcEEEEEcCCceEEeecCC
Confidence 987 899999999999999999998766543311 2366799999985 5699999999999999763
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-35 Score=294.08 Aligned_cols=280 Identities=20% Similarity=0.281 Sum_probs=226.6
Q ss_pred EEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCC------------------CeEEEEEecCC
Q 008820 245 FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH------------------KVMAVVYVDED 304 (552)
Q Consensus 245 ~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~------------------~v~~v~~~~~~ 304 (552)
+....+|.+.|++++|+ |++|++|+ |+++++|++.+++.+..+..|.. .|.+++|+|++
T Consensus 57 ~~~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg 135 (393)
T 1erj_A 57 LHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG 135 (393)
T ss_dssp EEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS
T ss_pred eEEecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC
Confidence 33444799999999999 89999987 68999999999999888876542 38999999966
Q ss_pred CCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCC
Q 008820 305 QPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSA 384 (552)
Q Consensus 305 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~ 384 (552)
. ++++|+.|++|++||+.+++.. ..+..+.. .....++++++++|++|+.|++|++||++++++...+. +...
T Consensus 136 ~-~l~s~~~d~~i~iwd~~~~~~~---~~~~~h~~--~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~ 208 (393)
T 1erj_A 136 K-FLATGAEDRLIRIWDIENRKIV---MILQGHEQ--DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDG 208 (393)
T ss_dssp S-EEEEEETTSCEEEEETTTTEEE---EEECCCSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSC
T ss_pred C-EEEEEcCCCeEEEEECCCCcEE---EEEccCCC--CEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCC
Confidence 5 7899999999999999865432 33333332 12245778899999999999999999999999888776 5677
Q ss_pred eEEEEEeC---CEEEEEeCCCcEEEEECCCCceeEEEec------CCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc
Q 008820 385 VSTLAVCN---GVLYSGSRDGTIRLWSLSDHSLLTVLEE------DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK 455 (552)
Q Consensus 385 v~~l~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 455 (552)
+.++++++ .++++|+.|++|++||+++++.+..+.. .+...+.+ ++|+|++++|++|+.|+.|++||+..
T Consensus 209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~-v~~~~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS-VVFTRDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE-EEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEE-EEECCCCCEEEEEeCCCEEEEEECCC
Confidence 99999983 3999999999999999999988777631 23445555 69999999999999999999999653
Q ss_pred --------------ceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC
Q 008820 456 --------------FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ 519 (552)
Q Consensus 456 --------------~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 519 (552)
+...+.+|...|.++.+ ++.+|++|+.|+.|++||+.+++....+..+ ...|.+++|++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h-----~~~v~~v~~~~ 362 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH-----RNSVISVAVAN 362 (393)
T ss_dssp -------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC-----SSCEEEEEECS
T ss_pred CCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC-----CCCEEEEEecC
Confidence 34567789999999887 8899999999999999999988766555432 66799999875
Q ss_pred --------CeEEEEeCCCeEEEEEecC
Q 008820 520 --------GKLFVGCADRTVKIALCNR 538 (552)
Q Consensus 520 --------~~l~s~s~Dg~v~iw~~~~ 538 (552)
+.|++|+.||+|+||++..
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcCcCCCCCEEEEECCCCcEEECcccc
Confidence 2499999999999999874
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-35 Score=286.48 Aligned_cols=266 Identities=17% Similarity=0.279 Sum_probs=227.3
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCC----
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF---- 282 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~---- 282 (552)
+...+..+.+++++..++++..++.+++|+ +..|...|.+++|+ +++|++|+.|+.|++||+.++
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~ 133 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSC
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcc
Confidence 344588889999999999999999999997 46799999999999 999999999999999999865
Q ss_pred eEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCC
Q 008820 283 SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR 362 (552)
Q Consensus 283 ~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg 362 (552)
+....+.+|.+.|.++.|++++ .+++++.|++|++||+.++... ..+..+.. .....+++|+++++++|+.||
T Consensus 134 ~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~---~~~~~h~~--~v~~~~~~~~~~~l~sg~~d~ 206 (340)
T 1got_B 134 RVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT---TTFTGHTG--DVMSLSLAPDTRLFVSGACDA 206 (340)
T ss_dssp EEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEE---EEECCCSS--CEEEEEECTTSSEEEEEETTS
T ss_pred eeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEE---EEEcCCCC--ceEEEEECCCCCEEEEEeCCC
Confidence 4667889999999999999865 4789999999999999876433 33333332 123457888899999999999
Q ss_pred cEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEE
Q 008820 363 TIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLV 440 (552)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 440 (552)
.|++||+++++++..+.+|...|++++|+ +++|++|+.|++|++||+++++.+..+...........++|+|++++++
T Consensus 207 ~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 286 (340)
T 1got_B 207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286 (340)
T ss_dssp CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred cEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEE
Confidence 99999999999999999999999999999 4499999999999999999998887776433222233479999999999
Q ss_pred EEECCCcEEEEeCC--cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEe
Q 008820 441 VSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQE 490 (552)
Q Consensus 441 ~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd 490 (552)
+|+.||.|++||.. +....+.+|...|.++.| ++.+|++|+.|+.|++||
T Consensus 287 ~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999964 467788999999999987 889999999999999997
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=294.32 Aligned_cols=285 Identities=22% Similarity=0.306 Sum_probs=243.5
Q ss_pred EEEeecCccc-eEEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC
Q 008820 245 FKDLQGHRDC-VTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (552)
Q Consensus 245 ~~~l~~H~~~-V~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (552)
...+.+|.+. +.++.++++++++|+.||+|++||+.+++.+..+.+|.+.|.+++|+ +.++++|+.||+|++||+.
T Consensus 111 ~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 111 PKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp CEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETT
T ss_pred eEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECC
Confidence 3558899986 57888889999999999999999999999999999999999999997 3489999999999999998
Q ss_pred CCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEeCCCc
Q 008820 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGT 403 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~ 403 (552)
++.... .+..+. ..+.++.++++.+++|+.||.|++||+++++.+..+.+|...|.++.+.++.+++|+.||.
T Consensus 188 ~~~~~~---~~~~h~----~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~ 260 (445)
T 2ovr_B 188 TGECIH---TLYGHT----STVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM 260 (445)
T ss_dssp TTEEEE---EECCCS----SCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSC
T ss_pred cCcEEE---EECCCC----CcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCE
Confidence 764332 233322 2466777788999999999999999999999999999999999999998779999999999
Q ss_pred EEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEecCCEEEEEe
Q 008820 404 IRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFLEGKWLFTGG 481 (552)
Q Consensus 404 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~~~~~l~sgs 481 (552)
|++||+++++.+..+..+. ..+.+ +.+ ++.++++|+.||.|++||.+ +.+..+.+|...+.++.++++++++|+
T Consensus 261 i~iwd~~~~~~~~~~~~~~-~~v~~-~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 336 (445)
T 2ovr_B 261 VKVWDPETETCLHTLQGHT-NRVYS-LQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGN 336 (445)
T ss_dssp EEEEEGGGTEEEEEECCCS-SCEEE-EEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEE
T ss_pred EEEEECCCCcEeEEecCCC-CceEE-EEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEe
Confidence 9999999999998887653 44443 345 88999999999999999965 567788899999999999999999999
Q ss_pred CCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEecCCcceeEEE
Q 008820 482 WDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCNRQIPEIFSL 546 (552)
Q Consensus 482 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~~~~~~~~~~ 546 (552)
.||.|++||+.+++....+.... .+...|.+++|+++.+++|+.||.|++||+. ++..+..+
T Consensus 337 ~dg~i~vwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~ 398 (445)
T 2ovr_B 337 ADSTVKIWDIKTGQCLQTLQGPN--KHQSAVTCLQFNKNFVITSSDDGTVKLWDLK-TGEFIRNL 398 (445)
T ss_dssp TTSCEEEEETTTCCEEEEECSTT--SCSSCEEEEEECSSEEEEEETTSEEEEEETT-TCCEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEccCC--CCCCCEEEEEECCCEEEEEeCCCeEEEEECC-CCceeeee
Confidence 99999999999887766554321 2367799999999999999999999999998 45555555
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-34 Score=282.24 Aligned_cols=282 Identities=19% Similarity=0.316 Sum_probs=218.2
Q ss_pred EEEEeecCccceEEEEE-----c---CCEEEEEeCCCcEEEEeCCC-------CeEEEEEeCCCCCeEEEEEecCCCCEE
Q 008820 244 KFKDLQGHRDCVTGLAV-----G---GGFLFSSSFDKSIHVWSLKD-------FSHVHTFKGHDHKVMAVVYVDEDQPLC 308 (552)
Q Consensus 244 ~~~~l~~H~~~V~~l~~-----s---~~~l~s~s~dg~I~iwd~~~-------~~~~~~~~~h~~~v~~v~~~~~~~~~l 308 (552)
....|.||.+.|++++| + +++|+||+.|++|++||+.+ +.+...+.+|...|.+++|+|++. ++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~-~l 91 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC-FA 91 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT-EE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC-EE
Confidence 45679999999999999 3 78999999999999999874 356778899999999999999654 78
Q ss_pred EEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEec---CCCCCe
Q 008820 309 ISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMS---GHKSAV 385 (552)
Q Consensus 309 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~---~h~~~v 385 (552)
++|+.|++|++||++++... ..+..+.. .....+++|++++|++|+.|++|++||+.. ....... +|...|
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~---~~~~~h~~--~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v 165 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTY---KRFVGHQS--EVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWV 165 (343)
T ss_dssp EEEETTSEEEEEETTSSCEE---EEEECCCS--CEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCE
T ss_pred EEEcCCCcEEEEECCCCcEE---EEEcCCCC--cEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCcee
Confidence 99999999999999876433 33333332 123457889999999999999999999974 3333333 788999
Q ss_pred EEEEEeC------------CEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 008820 386 STLAVCN------------GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN 453 (552)
Q Consensus 386 ~~l~~~~------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 453 (552)
.+++|++ .++++++.|++|++|| .+.+....+..+ ...+.+ ++|+|++++|++|+.||.|++||+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h-~~~v~~-~~~s~~g~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAH-ESNVNH-LSISPNGKYIATGGKDKKLLIWDI 242 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECC-SSCEEE-EEECTTSSEEEEEETTCEEEEEES
T ss_pred eeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCc-cccceE-EEECCCCCEEEEEcCCCeEEEEEC
Confidence 9999982 4799999999999999 455666667665 345555 699999999999999999999997
Q ss_pred Cc---ceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeee--eeccC------CCcccCcceEEEEEeC-
Q 008820 454 DK---FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEE--DVIPT------GAIPCGSVITALLYWQ- 519 (552)
Q Consensus 454 ~~---~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~--~~~~~------~~~~~~~~v~~l~~~~- 519 (552)
.. ....+ .+...|.++.| ++.+++++ .|+.|++||+.+.+... .+... ....+...|.+++|+|
T Consensus 243 ~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 320 (343)
T 2xzm_R 243 LNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNAL 320 (343)
T ss_dssp SCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSS
T ss_pred CCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCC
Confidence 42 22233 34556888887 77777655 58889999998765433 11110 0112356799999996
Q ss_pred -CeEEEEeCCCeEEEEEec
Q 008820 520 -GKLFVGCADRTVKIALCN 537 (552)
Q Consensus 520 -~~l~s~s~Dg~v~iw~~~ 537 (552)
..|++|+.||.|++|+++
T Consensus 321 g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 321 GKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp SCCEEEEETTSEEEEEEEE
T ss_pred CCeEEEecCCceEEEEEEE
Confidence 359999999999999986
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=282.31 Aligned_cols=285 Identities=20% Similarity=0.331 Sum_probs=225.8
Q ss_pred EEEeecCccceEEEEEc---CCEEEEEeCCCcEEEEeCCCC-----eEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCc
Q 008820 245 FKDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDF-----SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGG 316 (552)
Q Consensus 245 ~~~l~~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~~-----~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~ 316 (552)
..+|+||.++|++++|+ +++|+|||.|++|+|||+.+. .+...+.+|...|.+++|+|++. ++++++.|+.
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~-~l~s~~~d~~ 109 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ-FALSGSWDGT 109 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSE
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC-EEEEEccccc
Confidence 45799999999999998 579999999999999998754 35778899999999999999655 7899999999
Q ss_pred EEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCcee-EEecCCCCCeEEEEEe-C--
Q 008820 317 IFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLS-CTMSGHKSAVSTLAVC-N-- 392 (552)
Q Consensus 317 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~-~~~~~h~~~v~~l~~~-~-- 392 (552)
|++|+............ .. .......+.++++.+++|+.|+.+++||....... ....+|...+.+++|+ +
T Consensus 110 i~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 110 LRLWDLTTGTTTRRFVG---HT--KDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp EEEEETTTTEEEEEEEC---CS--SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred ceEEeecccceeeeecC---CC--CceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence 99999886533222221 11 22234567788889999999999999998766543 3457899999999998 2
Q ss_pred -CEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeeecccceEEE
Q 008820 393 -GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFA 469 (552)
Q Consensus 393 -~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~h~~~v~~ 469 (552)
.++++++.|+.|++||+++++.+..+..+ .+.+.+ ++|+|++++|++|+.||.|++||.+. .+..+.. ...+.+
T Consensus 185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h-~~~v~~-~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~ 261 (340)
T 4aow_A 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGH-TGYLNT-VTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINA 261 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEE-EEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEE
T ss_pred CcEEEEEcCCCEEEEEECCCCceeeEecCC-CCcEEE-EEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEe
Confidence 27899999999999999999998888776 455555 69999999999999999999999765 3444444 457888
Q ss_pred EEe-cCCEEEEEeCCCeEEEEecCCCeeeeeeccC----CCcccCcceEEEEEeCC--eEEEEeCCCeEEEEEecC
Q 008820 470 VFL-EGKWLFTGGWDKTVSVQELAGDEFEEDVIPT----GAIPCGSVITALLYWQG--KLFVGCADRTVKIALCNR 538 (552)
Q Consensus 470 v~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~v~~l~~~~~--~l~s~s~Dg~v~iw~~~~ 538 (552)
+.+ .+..+++++.|+.|++||+++.......... ....+...|++++|+++ .|++|+.||.|+|||+..
T Consensus 262 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 262 LCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp EEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred eecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 777 4456667778999999999987665443321 11234677999999964 599999999999999973
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-34 Score=275.02 Aligned_cols=281 Identities=21% Similarity=0.312 Sum_probs=240.0
Q ss_pred CeEEEEEeecCccceEEEEEc-CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEE
Q 008820 241 GNVKFKDLQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFV 319 (552)
Q Consensus 241 ~~~~~~~l~~H~~~V~~l~~s-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~v 319 (552)
+...+..+.+|.+.|++++|. +++|++|+.||.|++||+.+++....+..|...|.+++|+|++. ++++++.||.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKE-LLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTT-EEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCC-EEEEecCCCeEEE
Confidence 345678899999999999998 99999999999999999999999999999999999999999654 8899999999999
Q ss_pred EeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe---CCEEE
Q 008820 320 WSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC---NGVLY 396 (552)
Q Consensus 320 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~ 396 (552)
|++...........+..+.. .+.++.++++.+++++.||.|++|| .++....+..|...+.++.+. ++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 159 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQG----NVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFL 159 (313)
T ss_dssp EETTCCTTSCC-CEECCCSS----CEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEE
T ss_pred EEeeecCCCCcccchhhccc----CEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEE
Confidence 99987665555555544433 4566777899999999999999999 778888999999999999997 45999
Q ss_pred EEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEe--
Q 008820 397 SGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL-- 472 (552)
Q Consensus 397 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~-- 472 (552)
+++.|+.|++|| ..+....+...+...+.. ++++|++. +++++.||.|++||.+ +.+..+.+|...|.++.+
T Consensus 160 ~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~-~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 235 (313)
T 3odt_A 160 TASADKTIKLWQ--NDKVIKTFSGIHNDVVRH-LAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP 235 (313)
T ss_dssp EEETTSCEEEEE--TTEEEEEECSSCSSCEEE-EEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred EEECCCCEEEEe--cCceEEEEeccCcccEEE-EEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEec
Confidence 999999999999 556677777655566655 68999988 9999999999999965 567788899999999998
Q ss_pred cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-CeEEEEeCCCeEEEEEecC
Q 008820 473 EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-GKLFVGCADRTVKIALCNR 538 (552)
Q Consensus 473 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~s~s~Dg~v~iw~~~~ 538 (552)
++ .|++++.||.|++||+.+++....+..+ ...|.+++|++ +.+++++.||.|++|+++.
T Consensus 236 ~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 236 NG-DIVSCGEDRTVRIWSKENGSLKQVITLP-----AISIWSVDCMSNGDIIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp TS-CEEEEETTSEEEEECTTTCCEEEEEECS-----SSCEEEEEECTTSCEEEEETTSCEEEEESCG
T ss_pred CC-CEEEEecCCEEEEEECCCCceeEEEecc-----CceEEEEEEccCCCEEEEeCCCcEEEEeCCC
Confidence 55 6999999999999999988776665443 55799999995 4699999999999999984
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=297.32 Aligned_cols=314 Identities=22% Similarity=0.365 Sum_probs=261.3
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEE--------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEE
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKD--------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHT 287 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~ 287 (552)
+...+..+.+++++..++++..++.+++|+ +.+|...|++++|+ ++.+++++.|++|++||. +++....
T Consensus 220 ~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~ 298 (577)
T 2ymu_A 220 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQT 298 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEE
Confidence 344577788889999999999999998875 57899999999999 899999999999999996 5678889
Q ss_pred EeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEE
Q 008820 288 FKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAW 367 (552)
Q Consensus 288 ~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iw 367 (552)
+.+|...|.+++|+|++. .+++++.|++|++||..... +.....+.. .....+++|+++.+++|+.||.|++|
T Consensus 299 ~~~h~~~v~~~~~~~~~~-~l~t~~~d~~i~~w~~~~~~----~~~~~~~~~--~v~~~~~s~~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 299 LTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRNGQH----LQTLTGHSS--SVWGVAFSPDGQTIASASDDKTVKLW 371 (577)
T ss_dssp ECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSCE----EEEECCCSS--CEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCCe----eEEEeCCCC--CEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 999999999999999665 77999999999999976432 222323222 12235788999999999999999999
Q ss_pred ECCCCceeEEecCCCCCeEEEEEe-C-CEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECC
Q 008820 368 SLLDGTLSCTMSGHKSAVSTLAVC-N-GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES 445 (552)
Q Consensus 368 d~~~~~~~~~~~~h~~~v~~l~~~-~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 445 (552)
|. +++.+..+.+|...|++++|+ + .+|++++.|+.|++||. +++.+..+..+ ...+.. ++|+|++++|++++.|
T Consensus 372 ~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~-~~~v~~-~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 372 NR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSSVWG-VAFSPDDQTIASASDD 447 (577)
T ss_dssp ET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECC-SSCEEE-EEECTTSSEEEEEETT
T ss_pred cC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCC-CCCeEE-EEECCCCCEEEEEcCC
Confidence 95 678888999999999999999 3 39999999999999995 56777777766 344555 6999999999999999
Q ss_pred CcEEEEeCC-cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--
Q 008820 446 GSIKVWRND-KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG-- 520 (552)
Q Consensus 446 g~i~iwd~~-~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-- 520 (552)
+.|++||.. +.+..+.+|...|.++.| ++++|++++.|+.|++||..+ +....+.. +...|++++|+|+
T Consensus 448 ~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~~~~~~~~-----h~~~v~~l~~s~dg~ 521 (577)
T 2ymu_A 448 KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTG-----HSSSVRGVAFSPDGQ 521 (577)
T ss_dssp SEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-CEEEEEEC-----CSSCEEEEEECTTSS
T ss_pred CEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-CEEEEEeC-----CCCCEEEEEEcCCCC
Confidence 999999954 567788999999999887 899999999999999999754 44444333 2667999999963
Q ss_pred eEEEEeCCCeEEEEEecCCcceeEEEecccc
Q 008820 521 KLFVGCADRTVKIALCNRQIPEIFSLLLHIN 551 (552)
Q Consensus 521 ~l~s~s~Dg~v~iw~~~~~~~~~~~~~gh~~ 551 (552)
.|++++.||.|++||.+ +..+..+.+|.+
T Consensus 522 ~l~s~~~dg~v~lwd~~--~~~~~~~~~h~~ 550 (577)
T 2ymu_A 522 TIASASDDKTVKLWNRN--GQLLQTLTGHSS 550 (577)
T ss_dssp CEEEEETTSEEEEECTT--SCEEEEEECCSS
T ss_pred EEEEEECcCEEEEEeCC--CCEEEEEcCCCC
Confidence 49999999999999964 667888999964
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-34 Score=299.65 Aligned_cols=300 Identities=23% Similarity=0.389 Sum_probs=250.6
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEE--------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEE
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKD--------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHT 287 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~ 287 (552)
....+..+.+.+++..++++..++.+.+|+ +.+|.+.|.+++|+ ++++++++.|++|++||.. +..+..
T Consensus 261 ~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~ 339 (577)
T 2ymu_A 261 HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQT 339 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEE
Confidence 345577888889999999999999998886 56899999999999 8999999999999999975 456678
Q ss_pred EeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEE
Q 008820 288 FKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAW 367 (552)
Q Consensus 288 ~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iw 367 (552)
+.+|...|.+++|+|++. ++++++.|+.|++||... ..+..+..+.. . ....++++++++|++++.|+.|++|
T Consensus 340 ~~~~~~~v~~~~~s~~g~-~l~~~~~dg~v~~~~~~~----~~~~~~~~~~~-~-v~~~~~s~dg~~l~~~~~d~~v~~~ 412 (577)
T 2ymu_A 340 LTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRNG----QLLQTLTGHSS-S-VRGVAFSPDGQTIASASDDKTVKLW 412 (577)
T ss_dssp ECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTC----CEEEEEECCSS-C-EEEEEECTTSSCEEEEETTSEEEEE
T ss_pred EeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEcCCC----CEEEEecCCCC-C-eEEEEECCCCCEEEEEeCCCEEEEE
Confidence 899999999999999765 779999999999999642 22333333332 1 2235788999999999999999999
Q ss_pred ECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECC
Q 008820 368 SLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES 445 (552)
Q Consensus 368 d~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 445 (552)
|. +++.+..+.+|...|++++|+ +.+|++++.|++|++||. +++.+..+..+ ...+.+ ++|+|++++|++++.|
T Consensus 413 ~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~-~~~v~~-~~~spd~~~las~~~d 488 (577)
T 2ymu_A 413 NR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSSVRG-VAFSPDGQTIASASDD 488 (577)
T ss_dssp CT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECC-SSCEEE-EEECTTSCEEEEEETT
T ss_pred eC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCC-CCCEEE-EEEcCCCCEEEEEeCC
Confidence 95 678888999999999999999 349999999999999996 56777777766 344555 6999999999999999
Q ss_pred CcEEEEeC-CcceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--
Q 008820 446 GSIKVWRN-DKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG-- 520 (552)
Q Consensus 446 g~i~iwd~-~~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-- 520 (552)
+.|++||. ++.+..+.+|...|+++.| ++++|++++.||.|++||..+ +....+.. |...|++++|+|+
T Consensus 489 ~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~-~~~~~~~~-----h~~~v~~~~fs~dg~ 562 (577)
T 2ymu_A 489 KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTG-----HSSSVWGVAFSPDGQ 562 (577)
T ss_dssp SEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS-CEEEEEEC-----CSSCEEEEEECTTSS
T ss_pred CEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC-CEEEEEcC-----CCCCEEEEEEcCCCC
Confidence 99999995 4578889999999999987 899999999999999999754 34444332 2677999999953
Q ss_pred eEEEEeCCCeEEEEE
Q 008820 521 KLFVGCADRTVKIAL 535 (552)
Q Consensus 521 ~l~s~s~Dg~v~iw~ 535 (552)
.|++++.|++|++||
T Consensus 563 ~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 563 TIASASSDKTVKLWN 577 (577)
T ss_dssp CEEEEETTSCEEEEC
T ss_pred EEEEEeCCCEEEEeC
Confidence 499999999999997
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=289.58 Aligned_cols=284 Identities=19% Similarity=0.303 Sum_probs=233.1
Q ss_pred EEEEeecCccce-EEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q 008820 244 KFKDLQGHRDCV-TGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (552)
Q Consensus 244 ~~~~l~~H~~~V-~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 322 (552)
....+.+|.+.| .++.++++++++|+.||+|++||+.+++.+..+.+|.+.|.+++|+|++ ++++|+.||+|++||+
T Consensus 113 ~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEET
T ss_pred ceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEEC
Confidence 456789998884 7888889999999999999999999999999999999999999998865 8899999999999999
Q ss_pred CCCCCCccccccccCCCceeeeEEEEe--eCCCEEEEeeCCCcEEEEECCCCce-----------------------eEE
Q 008820 323 SFPLGHEPLKKWNEEKDWRYSGIHALT--TSGRYLYTGSGDRTIKAWSLLDGTL-----------------------SCT 377 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~sgs~dg~i~iwd~~~~~~-----------------------~~~ 377 (552)
+++... ..+..+... . ...++. ++++++++|+.||.|++||+++++. +..
T Consensus 191 ~~~~~~---~~~~~h~~~-v-~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 191 KKGCCT---HVFEGHNST-V-RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp TTTEEE---EEECCCSSC-E-EEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred CCCcEE---EEECCCCCc-c-EEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 876433 333333322 1 223444 4667999999999999999987652 556
Q ss_pred ecCCCCCeEEEEEeCCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--c
Q 008820 378 MSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--K 455 (552)
Q Consensus 378 ~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~ 455 (552)
+.+|...|.++...++++++++.|+.|++||+++++.+..+..+. ..+.+ ++++|+++++++|+.||.|++||.. +
T Consensus 266 ~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~-~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 266 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT-DRIYS-TIYDHERKRCISASMDTTIRIWDLENGE 343 (464)
T ss_dssp ECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEE-EEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred ccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-CCEEE-EEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 788999999998888899999999999999999999999887663 44554 6999999999999999999999964 5
Q ss_pred ceeeeecccceEEEEEecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEe--CCeEEEEeCCCeEEE
Q 008820 456 FMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW--QGKLFVGCADRTVKI 533 (552)
Q Consensus 456 ~~~~~~~h~~~v~~v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~l~s~s~Dg~v~i 533 (552)
.+..+.+|...|.++.+++.+|++++.||.|++||+.+......... ...+..++++ +..+++|+ ||.|++
T Consensus 344 ~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~-dg~i~i 416 (464)
T 3v7d_B 344 LMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHH------TNLSAITTFYVSDNILVSGS-ENQFNI 416 (464)
T ss_dssp EEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEC------TTCCCEEEEEECSSEEEEEE-TTEEEE
T ss_pred EEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecC------CCCccEEEEEeCCCEEEEec-CCeEEE
Confidence 77888999999999999999999999999999999998765544432 3345555565 34577776 999999
Q ss_pred EEecCCcceeE
Q 008820 534 ALCNRQIPEIF 544 (552)
Q Consensus 534 w~~~~~~~~~~ 544 (552)
||+.. +..+.
T Consensus 417 wd~~~-g~~~~ 426 (464)
T 3v7d_B 417 YNLRS-GKLVH 426 (464)
T ss_dssp EETTT-CCEEE
T ss_pred EECCC-CcEEe
Confidence 99983 44443
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=294.06 Aligned_cols=275 Identities=19% Similarity=0.304 Sum_probs=230.4
Q ss_pred EeecCccceEEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCC
Q 008820 247 DLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPL 326 (552)
Q Consensus 247 ~l~~H~~~V~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 326 (552)
...+|...|.+++++++++++|+.||+|++||+.+++....+.+|.+.|.+++| ++.++++|+.||+|++||+.++.
T Consensus 128 ~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 128 CRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp CCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCC
T ss_pred cccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCCc
Confidence 345788899999999999999999999999999999999999999999999998 45589999999999999998765
Q ss_pred CCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCcee---EEecCCCCCeEEEEEeCCEEEEEeCCCc
Q 008820 327 GHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLS---CTMSGHKSAVSTLAVCNGVLYSGSRDGT 403 (552)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~---~~~~~h~~~v~~l~~~~~~l~s~~~dg~ 403 (552)
.... +..+ ...+.++.++++.+++|+.||.|++||+++++.. ..+.+|...|.++++.++++++|+.||.
T Consensus 205 ~~~~---~~~h----~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~ 277 (435)
T 1p22_A 205 MLNT---LIHH----CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRT 277 (435)
T ss_dssp EEEE---ECCC----CSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSE
T ss_pred EEEE---EcCC----CCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCe
Confidence 4333 2222 2346677788889999999999999999987765 6778999999999998889999999999
Q ss_pred EEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEecCCEEEEEe
Q 008820 404 IRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFLEGKWLFTGG 481 (552)
Q Consensus 404 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~~~~~l~sgs 481 (552)
|++||+++++.+..+..+. ..+.+ +.+ +++++++|+.||.|++||.+ +.+..+.+|...|.++.+++.+|++|+
T Consensus 278 i~vwd~~~~~~~~~~~~~~-~~v~~-~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~ 353 (435)
T 1p22_A 278 IKVWNTSTCEFVRTLNGHK-RGIAC-LQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGA 353 (435)
T ss_dssp EEEEETTTCCEEEEEECCS-SCEEE-EEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEE
T ss_pred EEEEECCcCcEEEEEcCCC-CcEEE-EEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEe
Confidence 9999999999999988664 34433 344 57899999999999999965 567888999999999999999999999
Q ss_pred CCCeEEEEecCCCe---------eeeeeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEecCCc
Q 008820 482 WDKTVSVQELAGDE---------FEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCNRQI 540 (552)
Q Consensus 482 ~dg~i~iwd~~~~~---------~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~~~~ 540 (552)
.||.|++||+.++. ....... +...|.+++|++..|++|+.||.|++||+....
T Consensus 354 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 354 YDGKIKVWDLVAALDPRAPAGTLCLRTLVE-----HSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp TTSCEEEEEHHHHTSTTSCTTTTEEEEECC-----CSSCCCCEEECSSCEEECCSSSEEEEEC-----
T ss_pred CCCcEEEEECCCCCCccccccchheeeccC-----CCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCC
Confidence 99999999997543 2222222 366799999977889999999999999997443
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=284.02 Aligned_cols=267 Identities=18% Similarity=0.171 Sum_probs=209.3
Q ss_pred cccceeeecCcceEEEeeCCCeEEEEE-----e---------------ecCccceEEEEEc-CCEEEEEeCCCcEEEEeC
Q 008820 221 DIDQARAAGGVKDLVNGLSKGNVKFKD-----L---------------QGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSL 279 (552)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l---------------~~H~~~V~~l~~s-~~~l~s~s~dg~I~iwd~ 279 (552)
.+..+.+++++..++++. +..+++|+ + ..|...|++++|+ .+.|++|+.||+|+|||+
T Consensus 32 ~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~ 110 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWEL 110 (344)
T ss_dssp EEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEE
T ss_pred CEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEec
Confidence 367788888888888776 44444432 1 2355789999999 889999999999999999
Q ss_pred CCCeEEEE----EeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCC-E
Q 008820 280 KDFSHVHT----FKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-Y 354 (552)
Q Consensus 280 ~~~~~~~~----~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 354 (552)
.+++.+.. +.+|.+.|++++|+|++. +|++|+.|++|++||++++.. +..+..|... ....++++++. +
T Consensus 111 ~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~---~~~~~~h~~~--V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 111 DENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVV---LSSYRAHAAQ--VTCVAASPHKDSV 184 (344)
T ss_dssp CTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE---EEEECCCSSC--EEEEEECSSCTTE
T ss_pred cCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcE---EEEEcCcCCc--eEEEEecCCCCCc
Confidence 98875443 458999999999999665 789999999999999987643 3334444331 22346777765 8
Q ss_pred EEEeeCCCcEEEEECCCCceeEEec--CCCCCeEEEEEe--C-CEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEE
Q 008820 355 LYTGSGDRTIKAWSLLDGTLSCTMS--GHKSAVSTLAVC--N-GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSV 429 (552)
Q Consensus 355 l~sgs~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~--~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 429 (552)
|++|+.|++|++||++++++...+. .|...+++++|+ + .++++|+.||+|++||+++++++..+..|. ..+.+
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~-~~v~~- 262 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHS-QCVTG- 262 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCS-SCEEE-
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCC-CCEEE-
Confidence 8999999999999999999888774 456679999998 2 388999999999999999999999998764 45555
Q ss_pred EEEcCCC-CEEEEEECCCcEEEEeCCc-ceeeeecccceEEEEEe--cCC-EEEEEeCCCeEEEEecCCCee
Q 008820 430 LSLTAVQ-HTLVVSHESGSIKVWRNDK-FMKSMQTHKGSVFAVFL--EGK-WLFTGGWDKTVSVQELAGDEF 496 (552)
Q Consensus 430 ~~~s~~~-~~l~~g~~dg~i~iwd~~~-~~~~~~~h~~~v~~v~~--~~~-~l~sgs~dg~i~iwd~~~~~~ 496 (552)
++|+|++ ++|++|+.|++|++||... .+..+.+|...|.+++| ++. +|+++|.|++|++|++.+...
T Consensus 263 v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 263 LVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 6999997 5799999999999999654 34567899999999997 554 678999999999999987543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-33 Score=285.37 Aligned_cols=295 Identities=21% Similarity=0.366 Sum_probs=240.8
Q ss_pred CcceEEEeeCCCeEEEEE---------eecCccceEEEEEc-CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEE
Q 008820 230 GVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVV 299 (552)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~ 299 (552)
.+..++++..++.+++|+ +.+|.+.|++++|+ +.++++|+.||+|++||+.+++.+..+.+|.+.|.+++
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~ 210 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 210 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEE
Confidence 456888899999998887 56899999999999 66999999999999999999999999999999999999
Q ss_pred Eec-CCCCEEEEEcCCCcEEEEeCCCCCCCccc--------------------cccccCCCceeeeEEEEeeCCCEEEEe
Q 008820 300 YVD-EDQPLCISGDSGGGIFVWSFSFPLGHEPL--------------------KKWNEEKDWRYSGIHALTTSGRYLYTG 358 (552)
Q Consensus 300 ~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~l~sg 358 (552)
|++ .+..++++|+.||+|++||+.+....... ..... +...+.+++++++++++|
T Consensus 211 ~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~l~~~ 286 (464)
T 3v7d_B 211 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG----HMASVRTVSGHGNIVVSG 286 (464)
T ss_dssp EEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC----CSSCEEEEEEETTEEEEE
T ss_pred EecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC----ccceEEEEcCCCCEEEEE
Confidence 996 34568999999999999999876533211 11111 233566788999999999
Q ss_pred eCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCC
Q 008820 359 SGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQ 436 (552)
Q Consensus 359 s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 436 (552)
+.||.|++||+++++++..+.+|...|.+++|+ +..+++|+.||+|++||+++++.+..+..+. ..+.. +.++ +
T Consensus 287 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~-~~~~--~ 362 (464)
T 3v7d_B 287 SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT-ALVGL-LRLS--D 362 (464)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEE-EEEC--S
T ss_pred eCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCC-CcEEE-EEEc--C
Confidence 999999999999999999999999999999999 3499999999999999999999999988763 44443 4665 6
Q ss_pred CEEEEEECCCcEEEEeCCcceeeeec-c--cceEEEEEecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceE
Q 008820 437 HTLVVSHESGSIKVWRNDKFMKSMQT-H--KGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVIT 513 (552)
Q Consensus 437 ~~l~~g~~dg~i~iwd~~~~~~~~~~-h--~~~v~~v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 513 (552)
+++++++.||.|++||..+....+.. | ...+.++.++++++++|+ ||.|++||+.+++........ +...|.
T Consensus 363 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~----~~~~v~ 437 (464)
T 3v7d_B 363 KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILK----DADQIW 437 (464)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTT----TCSEEE
T ss_pred CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhcc----CCCcEE
Confidence 89999999999999998765544443 2 334556677999999999 899999999998776543222 267899
Q ss_pred EEEEeCCeEE-EEeCCCeEEEEEec
Q 008820 514 ALLYWQGKLF-VGCADRTVKIALCN 537 (552)
Q Consensus 514 ~l~~~~~~l~-s~s~Dg~v~iw~~~ 537 (552)
+++|+++.++ +++.||.+.+|-++
T Consensus 438 ~v~~~~~~l~~~~~~~g~~~i~~ld 462 (464)
T 3v7d_B 438 SVNFKGKTLVAAVEKDGQSFLEILD 462 (464)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEE
T ss_pred EEEecCCEEEEEEEeCCeEEEEEee
Confidence 9999987755 55677777766554
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-34 Score=280.68 Aligned_cols=273 Identities=21% Similarity=0.222 Sum_probs=221.8
Q ss_pred cccceeeecCcceEEEeeCCCeEEEEEe------------ecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCC--eE
Q 008820 221 DIDQARAAGGVKDLVNGLSKGNVKFKDL------------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF--SH 284 (552)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l------------~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~--~~ 284 (552)
.+..+.+++++..++++..++.+++|++ .+|.+.|++++|+ +++|++|+.|++|++||+.++ ++
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~ 97 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC 97 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEE
Confidence 5778889999999999999999999974 4799999999999 899999999999999998876 46
Q ss_pred EEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcE
Q 008820 285 VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTI 364 (552)
Q Consensus 285 ~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i 364 (552)
+..+.+|...|.+++|+|++. +|++|+.|++|++||++.......+..+..+... ....+++|++++|++|+.|+.|
T Consensus 98 ~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~--v~~~~~~p~~~~l~s~s~d~~i 174 (345)
T 3fm0_A 98 VTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD--VKHVVWHPSQELLASASYDDTV 174 (345)
T ss_dssp EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSC--EEEEEECSSSSCEEEEETTSCE
T ss_pred EEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCC--eEEEEECCCCCEEEEEeCCCcE
Confidence 788999999999999999654 8899999999999999876544444444444331 2345788999999999999999
Q ss_pred EEEECCCCc--eeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCC---------------ceeEEEecCCCCc
Q 008820 365 KAWSLLDGT--LSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDH---------------SLLTVLEEDSSGA 425 (552)
Q Consensus 365 ~iwd~~~~~--~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~---------------~~~~~~~~~~~~~ 425 (552)
++||.++++ +...+.+|...|++++|+ +.+|++++.|++|++||.... +++..+...+...
T Consensus 175 ~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 254 (345)
T 3fm0_A 175 KLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT 254 (345)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSC
T ss_pred EEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCc
Confidence 999998875 456889999999999999 349999999999999997432 2344454444555
Q ss_pred eEEEEEEcCCCCEEEEEECCCcEEEEeCCcc-----------eeeeecccceEEEEEe--cC-CEEEEEeCCCeEEEEec
Q 008820 426 VSSVLSLTAVQHTLVVSHESGSIKVWRNDKF-----------MKSMQTHKGSVFAVFL--EG-KWLFTGGWDKTVSVQEL 491 (552)
Q Consensus 426 ~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-----------~~~~~~h~~~v~~v~~--~~-~~l~sgs~dg~i~iwd~ 491 (552)
+.. ++|++++..+++++.|+.|++|+.... .....+|...|.+++| ++ .+|++|+.||+|++|++
T Consensus 255 v~~-v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~ 333 (345)
T 3fm0_A 255 IYD-IAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKY 333 (345)
T ss_dssp EEE-EEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEE
T ss_pred EEE-EEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEe
Confidence 555 699999999999999999999985321 1223579999999998 44 59999999999999999
Q ss_pred CCCeee
Q 008820 492 AGDEFE 497 (552)
Q Consensus 492 ~~~~~~ 497 (552)
.+++..
T Consensus 334 ~~~~~~ 339 (345)
T 3fm0_A 334 QRPEGL 339 (345)
T ss_dssp CC----
T ss_pred cCCCCc
Confidence 876543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=279.25 Aligned_cols=267 Identities=18% Similarity=0.249 Sum_probs=224.8
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCC----
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF---- 282 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~---- 282 (552)
+...+.++.+++++..++++..++.+++|+ +..|...|.+++|+ +.++++|+.|+.+++|++...
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~ 142 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN 142 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc
Confidence 344588899999999999999999999997 45688899999999 999999999999999998643
Q ss_pred --eEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEee--CCCEEEEe
Q 008820 283 --SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT--SGRYLYTG 358 (552)
Q Consensus 283 --~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~sg 358 (552)
.....+.+|...|.+++|+|++. .+++++.|++|++||+++++.. ..+..+... ....++++ +++.|++|
T Consensus 143 ~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~---~~~~~h~~~--v~~~~~~~~~~g~~l~sg 216 (354)
T 2pbi_B 143 MAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLL---QSFHGHGAD--VLCLDLAPSETGNTFVSG 216 (354)
T ss_dssp SGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEE---EEEECCSSC--EEEEEECCCSSCCEEEEE
T ss_pred ccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEE---EEEcCCCCC--eEEEEEEeCCCCCEEEEE
Confidence 34567788999999999998655 7789999999999999876533 333333321 12335555 46799999
Q ss_pred eCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCC
Q 008820 359 SGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQ 436 (552)
Q Consensus 359 s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 436 (552)
+.||.|++||+++++++..+.+|...|++++|+ ++.|++|+.|++|++||+++++.+..+..+........++|+|++
T Consensus 217 s~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g 296 (354)
T 2pbi_B 217 GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG 296 (354)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS
T ss_pred eCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCC
Confidence 999999999999999999999999999999999 449999999999999999998887777654332233447999999
Q ss_pred CEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEe
Q 008820 437 HTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQE 490 (552)
Q Consensus 437 ~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd 490 (552)
+++++|+.|+.|++||.. +.+..+.+|...|.++.| ++++|++|+.||+|++|+
T Consensus 297 ~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 297 RLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999964 467788899999999987 899999999999999996
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=293.21 Aligned_cols=277 Identities=17% Similarity=0.311 Sum_probs=226.0
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCe---
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS--- 283 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~--- 283 (552)
+...+..+.+++.+..++++..++.+++|+ +.+|...|.+++|+ +++|++|+.|+.|++||+.+..
T Consensus 65 H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~ 144 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD 144 (380)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC
T ss_pred cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc
Confidence 445688999999999999999999999997 56899999999999 9999999999999999986532
Q ss_pred ----EEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcccccc-ccCCCceeeeEEEEe-eCCCEEEE
Q 008820 284 ----HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKW-NEEKDWRYSGIHALT-TSGRYLYT 357 (552)
Q Consensus 284 ----~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~l~s 357 (552)
....+.+|.+.|.++.|+|+++..+++|+.|++|++||+.++.....+... ...+...... .++. +++++|++
T Consensus 145 ~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s 223 (380)
T 3iz6_a 145 GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS-LSINSLNANMFIS 223 (380)
T ss_dssp CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEE-EEECSSSCCEEEE
T ss_pred CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEE-EEeecCCCCEEEE
Confidence 345678999999999999988888999999999999999876543322111 1111111222 2333 37789999
Q ss_pred eeCCCcEEEEECC-CCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCC-----ceEEE
Q 008820 358 GSGDRTIKAWSLL-DGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSG-----AVSSV 429 (552)
Q Consensus 358 gs~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~~ 429 (552)
|+.||+|++||++ .++.+..+.+|...|++++|+ +.+|++|+.|++|++||+++++.+..+..+... .....
T Consensus 224 gs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~ 303 (380)
T 3iz6_a 224 GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTS 303 (380)
T ss_dssp EETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSE
T ss_pred EECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEE
Confidence 9999999999998 567888999999999999999 349999999999999999999988887654221 11233
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCC--cceeee----ecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCe
Q 008820 430 LSLTAVQHTLVVSHESGSIKVWRND--KFMKSM----QTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDE 495 (552)
Q Consensus 430 ~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~----~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~ 495 (552)
++|+|+++++++|+.||.|++||.. +....+ .+|.+.|.++.| ++.+|++|+.||+|++|++.+.+
T Consensus 304 ~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 304 VAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 7999999999999999999999964 334444 679999999887 89999999999999999998653
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-34 Score=285.68 Aligned_cols=293 Identities=16% Similarity=0.201 Sum_probs=236.6
Q ss_pred EEEeecCccceEEEEEcCCEEEEEeCCCcEEEEeCCCCe------EEEEEeCCCCCeEEEEEecC---CC---CEEEEEc
Q 008820 245 FKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFS------HVHTFKGHDHKVMAVVYVDE---DQ---PLCISGD 312 (552)
Q Consensus 245 ~~~l~~H~~~V~~l~~s~~~l~s~s~dg~I~iwd~~~~~------~~~~~~~h~~~v~~v~~~~~---~~---~~l~s~~ 312 (552)
...+.+|.++|++++|+.++|++|+.||+|++||+.+++ .+..+.+|...|.+++|+|+ ++ .+|++++
T Consensus 9 ~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp EEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc
Confidence 456889999999999999999999999999999999887 78889999999999999997 24 5889999
Q ss_pred CCCcEEEEeCCCCCCCcc--ccccccCCC---ceeeeEEEEe----eCCCE-EEEeeCCCcEEEEECCC------CceeE
Q 008820 313 SGGGIFVWSFSFPLGHEP--LKKWNEEKD---WRYSGIHALT----TSGRY-LYTGSGDRTIKAWSLLD------GTLSC 376 (552)
Q Consensus 313 ~dg~i~vwd~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~----~~~~~-l~sgs~dg~i~iwd~~~------~~~~~ 376 (552)
.||.|++||+.+...... ...+..+.. .......+++ ++++. |++|+.||.|++||+++ ++.+.
T Consensus 89 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 168 (397)
T 1sq9_A 89 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN 168 (397)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceee
Confidence 999999999987654111 222222210 1222345777 88899 99999999999999998 66666
Q ss_pred -----Ee-------cCCCCCeEEEEEe-CCEEEEEeCCCcEEEEECCCCceeEEEec---CC--CCceEEEEEEcCCCCE
Q 008820 377 -----TM-------SGHKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHSLLTVLEE---DS--SGAVSSVLSLTAVQHT 438 (552)
Q Consensus 377 -----~~-------~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~--~~~~~~~~~~s~~~~~ 438 (552)
.+ ..|...|.+++|+ ++.+++++.|+.|++||+++++.+..+.. +. ...+.+ ++|+|++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~-i~~~~~~~~ 247 (397)
T 1sq9_A 169 WSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS-VKFSPQGSL 247 (397)
T ss_dssp CCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE-EEECSSTTE
T ss_pred ccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccce-EEECCCCCE
Confidence 66 4589999999999 33999999999999999999999988886 30 344444 799999999
Q ss_pred EEEEECC---CcEEEEeCC--cceeeeec-------------ccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeee
Q 008820 439 LVVSHES---GSIKVWRND--KFMKSMQT-------------HKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEE 498 (552)
Q Consensus 439 l~~g~~d---g~i~iwd~~--~~~~~~~~-------------h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~ 498 (552)
|++++.| |.|++||+. +.+..+.. |...|.++.| ++++|++++.||.|++||+.+++...
T Consensus 248 l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 327 (397)
T 1sq9_A 248 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT 327 (397)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeE
Confidence 9999999 999999965 46677777 9999999987 79999999999999999999887766
Q ss_pred eeccCC-Cccc---------------CcceEEEEEeCC------------eEEEEeCCCeEEEEEecC
Q 008820 499 DVIPTG-AIPC---------------GSVITALLYWQG------------KLFVGCADRTVKIALCNR 538 (552)
Q Consensus 499 ~~~~~~-~~~~---------------~~~v~~l~~~~~------------~l~s~s~Dg~v~iw~~~~ 538 (552)
.+.... ...+ ...|.+++|+++ .|++++.||.|++|+++.
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 328 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred EEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 655110 0012 677999999964 699999999999999973
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=274.90 Aligned_cols=268 Identities=22% Similarity=0.385 Sum_probs=219.0
Q ss_pred CCCCccccceeeecCc-ceEEEeeCCCeEEEEE--------------eecCccceEEEEEc--CCEEEEEeCCCcEEEEe
Q 008820 216 NSDGADIDQARAAGGV-KDLVNGLSKGNVKFKD--------------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWS 278 (552)
Q Consensus 216 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd 278 (552)
..+...+..+.+.+.+ +.++++..++.+++|+ +.+|...|++++|+ +++|++|+.|++|++||
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd 93 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD 93 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 3444557778887754 7899999999999985 46899999999999 89999999999999999
Q ss_pred CCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEee------CC
Q 008820 279 LKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT------SG 352 (552)
Q Consensus 279 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 352 (552)
+.+++.+..+.+|...|.+++|+|++. ++++|+.|++|++||++.. .+..+..+... . ....+.| ++
T Consensus 94 ~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~----~~~~~~~h~~~-v-~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 94 VATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQ----CLATLLGHNDW-V-SQVRVVPNEKADDDS 166 (319)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSC----EEEEECCCSSC-E-EEEEECCC------C
T ss_pred CCCCCeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC----eEEEEeccCCc-E-EEEEEccCCCCCCCc
Confidence 999999999999999999999999654 7899999999999998632 23333333321 1 1234444 34
Q ss_pred CEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEE
Q 008820 353 RYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVL 430 (552)
Q Consensus 353 ~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 430 (552)
..+++++.|+.|++||+++++....+.+|...|++++|+ +.+|++++.||+|++||+++++.+..+..+ ..+.. +
T Consensus 167 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~-~ 243 (319)
T 3frx_A 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFS-L 243 (319)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--SCEEE-E
T ss_pred cEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CcEEE-E
Confidence 489999999999999999999999999999999999999 349999999999999999999998888764 34554 7
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCc--ceeee--------ecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCC
Q 008820 431 SLTAVQHTLVVSHESGSIKVWRNDK--FMKSM--------QTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGD 494 (552)
Q Consensus 431 ~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~--------~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~ 494 (552)
+|+|++.++++++.+ .+++|+... ....+ ..|...+.+++| +|++|++|+.||.|++||+.+.
T Consensus 244 ~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 244 AFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 999999999988765 599998653 22222 235667888776 9999999999999999998653
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=273.28 Aligned_cols=302 Identities=15% Similarity=0.242 Sum_probs=240.4
Q ss_pred ccceeeecCcceEEEeeCC---------CeEEEEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCe---EEEE
Q 008820 222 IDQARAAGGVKDLVNGLSK---------GNVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS---HVHT 287 (552)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~---~~~~ 287 (552)
+..+.++++++.++..... .........+|.+.|++++|+ ++++++++ ||.|++||+.+++ ....
T Consensus 12 v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~ 90 (337)
T 1gxr_A 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQ 90 (337)
T ss_dssp CCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEE
T ss_pred eeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeec
Confidence 4455556666665544322 223344456899999999999 88999998 9999999998764 3344
Q ss_pred Ee--CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEE
Q 008820 288 FK--GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365 (552)
Q Consensus 288 ~~--~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~ 365 (552)
+. +|...|.+++|+|++. ++++++.||.|++||+.++... .......+.. .....+++++++++++++.||.|+
T Consensus 91 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~v~ 166 (337)
T 1gxr_A 91 LDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPR-IKAELTSSAP--ACYALAISPDSKVCFSCCSDGNIA 166 (337)
T ss_dssp EECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--E-EEEEEECSSS--CEEEEEECTTSSEEEEEETTSCEE
T ss_pred ccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcc-eeeecccCCC--ceEEEEECCCCCEEEEEeCCCcEE
Confidence 44 7999999999999654 7899999999999999876421 1222222221 123457788899999999999999
Q ss_pred EEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEE
Q 008820 366 AWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH 443 (552)
Q Consensus 366 iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 443 (552)
+||+++++.+..+..|...|.+++|+ ++.+++++.|+.|++||+++++.+..+... ..+.. ++++|+++++++++
T Consensus 167 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~v~~-~~~s~~~~~l~~~~ 243 (337)
T 1gxr_A 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT--SQIFS-LGYCPTGEWLAVGM 243 (337)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS--SCEEE-EEECTTSSEEEEEE
T ss_pred EEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCC--CceEE-EEECCCCCEEEEEc
Confidence 99999999999999999999999999 349999999999999999999988877643 34444 79999999999999
Q ss_pred CCCcEEEEeCCc-ceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-
Q 008820 444 ESGSIKVWRNDK-FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ- 519 (552)
Q Consensus 444 ~dg~i~iwd~~~-~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~- 519 (552)
.|+.|++||... ....+..|...|.++.+ ++++|++++.||.|++||+.+++...... +...+.+++|++
T Consensus 244 ~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~------~~~~v~~~~~s~~ 317 (337)
T 1gxr_A 244 ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK------ESSSVLSCDISVD 317 (337)
T ss_dssp TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE------CSSCEEEEEECTT
T ss_pred CCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec------CCCcEEEEEECCC
Confidence 999999999764 44567789999999987 79999999999999999999887664433 256799999995
Q ss_pred -CeEEEEeCCCeEEEEEec
Q 008820 520 -GKLFVGCADRTVKIALCN 537 (552)
Q Consensus 520 -~~l~s~s~Dg~v~iw~~~ 537 (552)
..|++++.||.|++|++-
T Consensus 318 ~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 318 DKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp SCEEEEEETTSCEEEEEEE
T ss_pred CCEEEEecCCCeEEEEEEe
Confidence 359999999999999973
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=283.51 Aligned_cols=309 Identities=14% Similarity=0.152 Sum_probs=246.4
Q ss_pred ccceeeecCcceEEEeeCCCeEEEEEee---------cCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeC
Q 008820 222 IDQARAAGGVKDLVNGLSKGNVKFKDLQ---------GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKG 290 (552)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 290 (552)
...+.+++.++.++++..++.+.+|++. +| ..+....|+ +++|++|+.||.|++||+.+++....+.+
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 137 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA 137 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence 3467888999999999999999999864 33 334444556 89999999999999999999999888889
Q ss_pred CCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECC
Q 008820 291 HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLL 370 (552)
Q Consensus 291 h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~ 370 (552)
|...|.+++|+|++. +|++++.|+.|++||+.+++....+ ..+.. .....++++++++|++|+.||.|++||++
T Consensus 138 h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~---~~h~~--~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 211 (420)
T 3vl1_A 138 HVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTL---IGHRA--TVTDIAIIDRGRNVLSASLDGTIRLWECG 211 (420)
T ss_dssp SSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEE---ECCSS--CEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred ccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEE---cCCCC--cEEEEEEcCCCCEEEEEcCCCcEEEeECC
Confidence 999999999999655 8899999999999999876554433 23322 12345788899999999999999999999
Q ss_pred CCceeEEecC---CCCCeEEEEE---------------------e-C-CEEEEEeCCCcEEEEECCCCceeEEEecCCCC
Q 008820 371 DGTLSCTMSG---HKSAVSTLAV---------------------C-N-GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSG 424 (552)
Q Consensus 371 ~~~~~~~~~~---h~~~v~~l~~---------------------~-~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 424 (552)
+++.+..+.. |...|.++++ + + .++++++.||.|++||+++++.+..+...+..
T Consensus 212 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 291 (420)
T 3vl1_A 212 TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTC 291 (420)
T ss_dssp TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSS
T ss_pred CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCC
Confidence 9999998874 5556666666 3 2 38999999999999999999988888766556
Q ss_pred ceEEEEEEcCCCC-EEEEEECCCcEEEEeCCc---ceeeeec-ccceEEEEEe-cCCEEEEEeCCCeEEEEecCCCeeee
Q 008820 425 AVSSVLSLTAVQH-TLVVSHESGSIKVWRNDK---FMKSMQT-HKGSVFAVFL-EGKWLFTGGWDKTVSVQELAGDEFEE 498 (552)
Q Consensus 425 ~~~~~~~~s~~~~-~l~~g~~dg~i~iwd~~~---~~~~~~~-h~~~v~~v~~-~~~~l~sgs~dg~i~iwd~~~~~~~~ 498 (552)
.+.+ ++|+|++. ++++|+.||.|++||+++ ++..+.. |...+.++.+ ++++|++++.||.|++||+.+.....
T Consensus 292 ~v~~-~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~ 370 (420)
T 3vl1_A 292 SCNS-LTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESER 370 (420)
T ss_dssp CEEE-EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCS
T ss_pred Ccee-EEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCc
Confidence 6665 69999998 999999999999999764 3566666 6778888876 88899999999999999998642221
Q ss_pred eec----cCCCcccCcceEEEEEeC-C----eEEEEeCCCeEEEEEecC
Q 008820 499 DVI----PTGAIPCGSVITALLYWQ-G----KLFVGCADRTVKIALCNR 538 (552)
Q Consensus 499 ~~~----~~~~~~~~~~v~~l~~~~-~----~l~s~s~Dg~v~iw~~~~ 538 (552)
... ......+...|.+++|++ + .+++++.+|.+.+|+++.
T Consensus 371 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 371 PAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred cceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 111 001123366799999984 2 499999999999999874
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=281.61 Aligned_cols=307 Identities=16% Similarity=0.179 Sum_probs=249.7
Q ss_pred cccceeeecCcc-eEEEeeCCCeEEEEEe----e---------------c----------CccceEEEEEc--CCEEEEE
Q 008820 221 DIDQARAAGGVK-DLVNGLSKGNVKFKDL----Q---------------G----------HRDCVTGLAVG--GGFLFSS 268 (552)
Q Consensus 221 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~l----~---------------~----------H~~~V~~l~~s--~~~l~s~ 268 (552)
.+..+.+++.+. .++++..++.+.+|++ . . |.+.|++++|+ +++|++|
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 126 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTG 126 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEE
T ss_pred ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEE
Confidence 477888888888 8999999999999988 2 1 57799999999 8999999
Q ss_pred eCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCC---------
Q 008820 269 SFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKD--------- 339 (552)
Q Consensus 269 s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------- 339 (552)
+.||.|++|| .+++.+..+.+|...|.+++|+|++. ++++++.|+.|++||+.++.....+........
T Consensus 127 ~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (425)
T 1r5m_A 127 VENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSG 204 (425)
T ss_dssp ETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTEEEEEECCC--------------
T ss_pred eCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccC
Confidence 9999999999 77889999999999999999999655 778999999999999987644333222111100
Q ss_pred -ceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeE
Q 008820 340 -WRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLT 416 (552)
Q Consensus 340 -~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~ 416 (552)
.......+++++ ..+++++.||.|++||+++++.+..+..|...|.+++|+ +.+|++++.|+.|++||+++++.+.
T Consensus 205 ~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 283 (425)
T 1r5m_A 205 DGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN 283 (425)
T ss_dssp -CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSE
T ss_pred CcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccce
Confidence 000122355565 468899999999999999999999999999999999999 3499999999999999999999888
Q ss_pred EEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecC
Q 008820 417 VLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 417 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~ 492 (552)
.+..+ ...+.. +.|+|++ .+++++.||.|++||+. +.+..+..|...+.++.+ ++++|++++.||.|++||+.
T Consensus 284 ~~~~~-~~~i~~-~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 284 CFYGH-SQSIVS-ASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp EECCC-SSCEEE-EEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred EecCC-CccEEE-EEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 88765 344554 6999999 99999999999999965 466778889999999887 79999999999999999998
Q ss_pred CCe--------------------eeeeeccCCCcccCc-ceEEEEEeCC--eEEEEeCCCeEEEEEec
Q 008820 493 GDE--------------------FEEDVIPTGAIPCGS-VITALLYWQG--KLFVGCADRTVKIALCN 537 (552)
Q Consensus 493 ~~~--------------------~~~~~~~~~~~~~~~-~v~~l~~~~~--~l~s~s~Dg~v~iw~~~ 537 (552)
+.. ....+..+. .. .|.+++|+++ .|++++.||.|++|+++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 361 KLNSKSRSLYGNRDGILNPLPIPLYASYQSSQ----DNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp HHHC--------------CEECCEEEEECCTT----CCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred CCccceeeeecccccccCcccchhhhhhcCcc----cCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 765 333333221 12 7999999953 58999999999999986
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=279.33 Aligned_cols=282 Identities=13% Similarity=0.139 Sum_probs=222.0
Q ss_pred EEEEeecCccceEEEEEc--C-CEEEEEeCCCcEEEEeCCCCeEEEEEe--CCCCCeEEEEEecCCCCEEEEEcCCCcEE
Q 008820 244 KFKDLQGHRDCVTGLAVG--G-GFLFSSSFDKSIHVWSLKDFSHVHTFK--GHDHKVMAVVYVDEDQPLCISGDSGGGIF 318 (552)
Q Consensus 244 ~~~~l~~H~~~V~~l~~s--~-~~l~s~s~dg~I~iwd~~~~~~~~~~~--~h~~~v~~v~~~~~~~~~l~s~~~dg~i~ 318 (552)
....+.+|.+.|++++|+ + ++|++|+.||+|++||+.+++....+. +|...|.+++|+|++..++++++.|+.|+
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT 144 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence 456789999999999999 5 899999999999999999888877775 69999999999997777999999999999
Q ss_pred EEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CC-EE
Q 008820 319 VWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NG-VL 395 (552)
Q Consensus 319 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l 395 (552)
+||+... ....+.....+. ......++++++++|++|+.||.|++||+ +++.+..+.+|...|.+++|+ +. ++
T Consensus 145 iwd~~~~-~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l 220 (383)
T 3ei3_B 145 LRDFSGS-VIQVFAKTDSWD--YWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLM 220 (383)
T ss_dssp EEETTSC-EEEEEECCCCSS--CCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEE
T ss_pred EEECCCC-ceEEEeccCCCC--CCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEE
Confidence 9999842 222222111111 22334578899999999999999999999 678888999999999999999 33 89
Q ss_pred EEEeCCCcEEEEECCC----CceeEEEecCCCCceEEEEEEcC-CCCEEEEEECCCcEEEEeCCc--ceeeeeccc----
Q 008820 396 YSGSRDGTIRLWSLSD----HSLLTVLEEDSSGAVSSVLSLTA-VQHTLVVSHESGSIKVWRNDK--FMKSMQTHK---- 464 (552)
Q Consensus 396 ~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iwd~~~--~~~~~~~h~---- 464 (552)
++++.|++|++||+++ +..+..+. +...+.+ ++|+| ++++|++++.|+.|++||++. ....+.+|.
T Consensus 221 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~-~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 221 ATSSVDATVKLWDLRNIKDKNSYIAEMP--HEKPVNA-AYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297 (383)
T ss_dssp EEEETTSEEEEEEGGGCCSTTCEEEEEE--CSSCEEE-EEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred EEEeCCCEEEEEeCCCCCcccceEEEec--CCCceEE-EEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence 9999999999999998 55666663 3455555 69999 999999999999999999653 444554442
Q ss_pred -------------ceEEEEE--ecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEEeC
Q 008820 465 -------------GSVFAVF--LEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCA 527 (552)
Q Consensus 465 -------------~~v~~v~--~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~ 527 (552)
..+..+. +++++ +|+.||.|++||+.+++....+.... +...+..++|+++ .|++|+
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~---~~~~~~~~~~s~~g~~l~s~s- 371 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPN---AAGIISLNKFSPTGDVLASGM- 371 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTT---BCSCCCEEEECTTSSEEEEEE-
T ss_pred ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCC---CCceEEEEEEecCccEEEEec-
Confidence 2233333 35665 77899999999999888766655432 2566788899953 477776
Q ss_pred CCeEEEEEecC
Q 008820 528 DRTVKIALCNR 538 (552)
Q Consensus 528 Dg~v~iw~~~~ 538 (552)
||.|++|+++.
T Consensus 372 d~~i~iw~~~~ 382 (383)
T 3ei3_B 372 GFNILIWNRED 382 (383)
T ss_dssp TTEEEEEECC-
T ss_pred CCcEEEEecCC
Confidence 99999999873
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=289.70 Aligned_cols=314 Identities=15% Similarity=0.185 Sum_probs=247.4
Q ss_pred ccceeeecCcc-eEEEe----------eCCCeEEEEEee-----------cCccceEEEEEc--CCEEEEEeCCCcEEEE
Q 008820 222 IDQARAAGGVK-DLVNG----------LSKGNVKFKDLQ-----------GHRDCVTGLAVG--GGFLFSSSFDKSIHVW 277 (552)
Q Consensus 222 ~~~~~~~~~~~-~~~~~----------~~~~~~~~~~l~-----------~H~~~V~~l~~s--~~~l~s~s~dg~I~iw 277 (552)
+..+.+++.+. .++++ ..++.+.+|++. .|...|++++|+ +++|++|+.||.|++|
T Consensus 15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw 94 (416)
T 2pm9_A 15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELY 94 (416)
T ss_dssp SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEE
T ss_pred cceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEe
Confidence 45566666665 66676 678889999853 478899999998 8999999999999999
Q ss_pred eCCC----CeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCC------CCccccccccCCCceeeeEEE
Q 008820 278 SLKD----FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPL------GHEPLKKWNEEKDWRYSGIHA 347 (552)
Q Consensus 278 d~~~----~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~ 347 (552)
|+.+ .+.+..+.+|...|.+++|+|++..++++++.||.|++||+.+.. ..........+. ......+
T Consensus 95 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~ 172 (416)
T 2pm9_A 95 STNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV--DEVISLA 172 (416)
T ss_dssp CCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSS--CCCCEEE
T ss_pred ecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCC--CCeeEEE
Confidence 9987 458888999999999999999867789999999999999998765 222221122222 1223457
Q ss_pred EeeC-CCEEEEeeCCCcEEEEECCCCceeEEecCC------CCCeEEEEEe-C--CEEEEEeCCC---cEEEEECCCC-c
Q 008820 348 LTTS-GRYLYTGSGDRTIKAWSLLDGTLSCTMSGH------KSAVSTLAVC-N--GVLYSGSRDG---TIRLWSLSDH-S 413 (552)
Q Consensus 348 ~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h------~~~v~~l~~~-~--~~l~s~~~dg---~i~iwd~~~~-~ 413 (552)
++++ +.++++++.||.|++||+++++.+..+..| ...|.+++|+ + .++++++.|+ .|++||++++ .
T Consensus 173 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~ 252 (416)
T 2pm9_A 173 WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT 252 (416)
T ss_dssp ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS
T ss_pred eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC
Confidence 7887 679999999999999999999999988876 7899999999 3 3899999999 9999999986 5
Q ss_pred eeEEEecCCCCceEEEEEEcC-CCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEe--cC-CEEEEEeCCCeEE
Q 008820 414 LLTVLEEDSSGAVSSVLSLTA-VQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EG-KWLFTGGWDKTVS 487 (552)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~-~~l~sgs~dg~i~ 487 (552)
.+..+...+...+.. ++|+| ++++|++++.||.|++||+. +.+..+.+|...|.++.| ++ .+|++++.||.|+
T Consensus 253 ~~~~~~~~~~~~v~~-~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~ 331 (416)
T 2pm9_A 253 PLQTLNQGHQKGILS-LDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIE 331 (416)
T ss_dssp CSBCCCSCCSSCEEE-EEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEE
T ss_pred CcEEeecCccCceeE-EEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEE
Confidence 566665123455555 68998 99999999999999999965 567788899999998887 66 8999999999999
Q ss_pred EEecCCCeeeeeecc------------------------------CCCcccCcceEEEEEeC-Ce-EEEEeCCCeEEEEE
Q 008820 488 VQELAGDEFEEDVIP------------------------------TGAIPCGSVITALLYWQ-GK-LFVGCADRTVKIAL 535 (552)
Q Consensus 488 iwd~~~~~~~~~~~~------------------------------~~~~~~~~~v~~l~~~~-~~-l~s~s~Dg~v~iw~ 535 (552)
+||+.+......... .....+...+.+++|++ +. |++++.||.|+||+
T Consensus 332 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 332 VQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITN 411 (416)
T ss_dssp EEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred EEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence 999987643322110 00001345677888995 44 77899999999999
Q ss_pred ecC
Q 008820 536 CNR 538 (552)
Q Consensus 536 ~~~ 538 (552)
+..
T Consensus 412 ~~~ 414 (416)
T 2pm9_A 412 PKI 414 (416)
T ss_dssp CCC
T ss_pred ecc
Confidence 873
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-33 Score=267.51 Aligned_cols=266 Identities=18% Similarity=0.278 Sum_probs=220.4
Q ss_pred ccccceeeecCcceEEEeeCCCeEEEEEe---------ecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008820 220 ADIDQARAAGGVKDLVNGLSKGNVKFKDL---------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF 288 (552)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~ 288 (552)
..+..+.+++.+..++++..++.+++|++ .+|..+|.+++|+ +++|++|+.|++|++||+.+++.+..+
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 93 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF 93 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEE
Confidence 45888999999999999999999999974 5799999999998 899999999999999999999999999
Q ss_pred eCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEee-CCCEEEEeeCCCcEEEE
Q 008820 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAW 367 (552)
Q Consensus 289 ~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sgs~dg~i~iw 367 (552)
.+|.+.|.+++|+|++. ++++|+.|++|++||++++.. ....+..+.. .....+++| ++..|++|+.|++|++|
T Consensus 94 ~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~--~~~~~~~h~~--~v~~v~~~p~~~~~l~sgs~D~~v~iw 168 (304)
T 2ynn_A 94 EAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWA--LEQTFEGHEH--FVMCVAFNPKDPSTFASGCLDRTVKVW 168 (304)
T ss_dssp ECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTE--EEEEECCCCS--CEEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred eCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcc--hhhhhcccCC--cEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 99999999999999765 789999999999999986432 1222333322 123446777 56799999999999999
Q ss_pred ECCCCceeEEec-CCCCCeEEEEEe---C-CEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEE
Q 008820 368 SLLDGTLSCTMS-GHKSAVSTLAVC---N-GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS 442 (552)
Q Consensus 368 d~~~~~~~~~~~-~h~~~v~~l~~~---~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 442 (552)
|++++.....+. +|...+..+.|+ + .+|++|+.|++|++||+++++++..+..|. ..+.. ++|+|++.+|++|
T Consensus 169 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~-~~v~~-~~~~p~~~~l~s~ 246 (304)
T 2ynn_A 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM-SNVSF-AVFHPTLPIIISG 246 (304)
T ss_dssp ETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS-SCEEE-EEECSSSSEEEEE
T ss_pred ECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC-CCEEE-EEECCCCCEEEEE
Confidence 998887766654 566889999997 2 389999999999999999999999998774 44444 6899999999999
Q ss_pred ECCCcEEEEeCC--cceeeeecccceEEEEEe--cCC--EEEEEeCCCeEEEEecCC
Q 008820 443 HESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGK--WLFTGGWDKTVSVQELAG 493 (552)
Q Consensus 443 ~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~--~l~sgs~dg~i~iwd~~~ 493 (552)
+.||+|++||.. +..+.+..|...+.++++ ++. ++++|+.| .+.+|++.+
T Consensus 247 s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 247 SEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp ETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred cCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence 999999999965 577888899999999885 443 57777755 577887764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-33 Score=271.71 Aligned_cols=268 Identities=19% Similarity=0.276 Sum_probs=205.3
Q ss_pred CccccceeeecCcceEEEeeCCCeEEEEEe------------ec-CccceEEEEEc--CCEEEEEeCCCcEEEEeCC---
Q 008820 219 GADIDQARAAGGVKDLVNGLSKGNVKFKDL------------QG-HRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK--- 280 (552)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------------~~-H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~--- 280 (552)
...+..+.+++. .++++..++.+++|++ .+ |.+.|++++|+ +++|++|+.|++|++||+.
T Consensus 14 ~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~ 91 (330)
T 2hes_X 14 KEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESA 91 (330)
T ss_dssp SSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC----
T ss_pred CCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCc
Confidence 344667777665 8889999999998864 23 99999999999 8999999999999999984
Q ss_pred ----CCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCC-CCCccccccccCCCceeeeEEEEeeCCCEE
Q 008820 281 ----DFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFP-LGHEPLKKWNEEKDWRYSGIHALTTSGRYL 355 (552)
Q Consensus 281 ----~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 355 (552)
+.+.+..+.+|...|.+++|+|++. +|++|+.|++|++||++.. .....+..+..+.. .....+++|++++|
T Consensus 92 ~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~--~v~~v~~~p~~~~l 168 (330)
T 2hes_X 92 DRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQ--DVKHVIWHPSEALL 168 (330)
T ss_dssp ---CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS--CEEEEEECSSSSEE
T ss_pred CccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC--ceEEEEECCCCCEE
Confidence 3467788999999999999999755 8899999999999999543 22233344444432 12334788899999
Q ss_pred EEeeCCCcEEEEECCCC--ceeEEecCCCCCeEEEEEeC---C-EEEEEeCCCcEEEEECCCC--------ceeEEEecC
Q 008820 356 YTGSGDRTIKAWSLLDG--TLSCTMSGHKSAVSTLAVCN---G-VLYSGSRDGTIRLWSLSDH--------SLLTVLEED 421 (552)
Q Consensus 356 ~sgs~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~~---~-~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~ 421 (552)
++|+.|++|++||..++ +++..+.+|...|.+++|++ + .|++|+.|++|++||++++ .....+...
T Consensus 169 ~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 248 (330)
T 2hes_X 169 ASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDV 248 (330)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSC
T ss_pred EEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccc
Confidence 99999999999999876 67888999999999999993 3 7999999999999999764 233444443
Q ss_pred CCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcc----e-eeeecccc-eEEEEEe----cCCEEEEEeCCCeEEEEec
Q 008820 422 SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF----M-KSMQTHKG-SVFAVFL----EGKWLFTGGWDKTVSVQEL 491 (552)
Q Consensus 422 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~----~-~~~~~h~~-~v~~v~~----~~~~l~sgs~dg~i~iwd~ 491 (552)
+...+.. ++|++++ +|++++.||.|++||.... . ....+|.. .|.++.| ++++|++|+.||+|++||+
T Consensus 249 h~~~v~~-v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 249 HKRQVYN-VAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp CSSCEEE-EEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred cccceEE-EEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 4555665 6888655 8999999999999996432 2 23357877 8988876 4789999999999999998
Q ss_pred CC
Q 008820 492 AG 493 (552)
Q Consensus 492 ~~ 493 (552)
++
T Consensus 327 ~~ 328 (330)
T 2hes_X 327 EK 328 (330)
T ss_dssp --
T ss_pred cc
Confidence 64
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-34 Score=289.57 Aligned_cols=291 Identities=14% Similarity=0.165 Sum_probs=220.9
Q ss_pred eEEEEEe-ecCccceEEEEEc---CCEEEEEeCCCcEEEEeCCC---Ce---EEEEEeCCCCCeEEEEEecCCCCEEEEE
Q 008820 242 NVKFKDL-QGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKD---FS---HVHTFKGHDHKVMAVVYVDEDQPLCISG 311 (552)
Q Consensus 242 ~~~~~~l-~~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~---~~---~~~~~~~h~~~v~~v~~~~~~~~~l~s~ 311 (552)
...+..+ .+|.++|++++|+ +++|++|+.||+|++||+.+ +. ....+ +|...|.+++|+|++ .+++++
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~-~~l~s~ 129 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNF-DAFAVS 129 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTS-SEEEEE
T ss_pred ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCC-CEEEEE
Confidence 3456677 8999999999998 57999999999999999876 33 23343 499999999999854 588999
Q ss_pred cCCCcEEEEeCC---CCCCCcccc-----ccc--c--CCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEec
Q 008820 312 DSGGGIFVWSFS---FPLGHEPLK-----KWN--E--EKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMS 379 (552)
Q Consensus 312 ~~dg~i~vwd~~---~~~~~~~~~-----~~~--~--~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 379 (552)
+.||.|++||++ .+....... ... . ...........++++++++++|+.||.|++||+++++++..+.
T Consensus 130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence 999999999995 222111111 110 0 1111111112245678899999999999999999999999998
Q ss_pred C--CCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEE----cCCCCEEEEEECCCcEEEE
Q 008820 380 G--HKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSL----TAVQHTLVVSHESGSIKVW 451 (552)
Q Consensus 380 ~--h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----s~~~~~l~~g~~dg~i~iw 451 (552)
+ |...|++++|+ +.+|++|+.||+|++||+++++++..+...+...+.+ +++ ++++.++++|+.||.|++|
T Consensus 210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~s~~~~~l~s~~~dg~i~iw 288 (437)
T 3gre_A 210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITH-VEVCQFYGKNSVIVVGGSSKTFLTIW 288 (437)
T ss_dssp CCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEE-EEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred cCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEE-EEeccccCCCccEEEEEcCCCcEEEE
Confidence 8 89999999999 4499999999999999999999999887444444444 544 4568899999999999999
Q ss_pred eCCc--ceeeeec--------------------------ccceEEEEEe-cCCEEEEEeCCCeEEEEecCCCeeeeeecc
Q 008820 452 RNDK--FMKSMQT--------------------------HKGSVFAVFL-EGKWLFTGGWDKTVSVQELAGDEFEEDVIP 502 (552)
Q Consensus 452 d~~~--~~~~~~~--------------------------h~~~v~~v~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~ 502 (552)
|+.+ ....+.+ |...|.++.+ ++++|++|+.||.|++||+.+++....+..
T Consensus 289 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 368 (437)
T 3gre_A 289 NFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVIS 368 (437)
T ss_dssp ETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred EcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEec
Confidence 9753 3333332 5566777777 678999999999999999998766554432
Q ss_pred CC--------------------------------CcccCcceEEEEEeCC----eEEEEeCCCeEEEEE
Q 008820 503 TG--------------------------------AIPCGSVITALLYWQG----KLFVGCADRTVKIAL 535 (552)
Q Consensus 503 ~~--------------------------------~~~~~~~v~~l~~~~~----~l~s~s~Dg~v~iw~ 535 (552)
+. ...+...|+++++.+. .|++|+.||.|+||+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 369 PSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp C--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 10 0114778999999854 599999999999995
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-32 Score=268.51 Aligned_cols=282 Identities=15% Similarity=0.206 Sum_probs=233.6
Q ss_pred eEEEEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEE
Q 008820 242 NVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFV 319 (552)
Q Consensus 242 ~~~~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~v 319 (552)
..+...+.+|.+.|++++|+ +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++ .++++++.||.|++
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT-KYCVTGSADYSIKL 100 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEE
T ss_pred ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCC-CEEEEEeCCCeEEE
Confidence 44567799999999999999 8999999999999999999999999999999999999999965 47899999999999
Q ss_pred EeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCC-----CcEEEEECCCCc-----------eeEEecCCCC
Q 008820 320 WSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD-----RTIKAWSLLDGT-----------LSCTMSGHKS 383 (552)
Q Consensus 320 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d-----g~i~iwd~~~~~-----------~~~~~~~h~~ 383 (552)
||+.+++....+. . . ......+++++++++++++.+ |.|++||+..+. ....+..|..
T Consensus 101 wd~~~~~~~~~~~---~-~--~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (369)
T 3zwl_B 101 WDVSNGQCVATWK---S-P--VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG 174 (369)
T ss_dssp EETTTCCEEEEEE---C-S--SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred EECCCCcEEEEee---c-C--CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence 9998765443333 1 1 122345788999999999999 999999997653 3445556666
Q ss_pred --CeEEEEEe--CCEEEEEeCCCcEEEEECCC-CceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--c
Q 008820 384 --AVSTLAVC--NGVLYSGSRDGTIRLWSLSD-HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--F 456 (552)
Q Consensus 384 --~v~~l~~~--~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~ 456 (552)
.+.+++|+ +..+++++.||.|++||+++ ++.+..+..+ ...+.. ++|+|++++|++++.||.|++||+.. .
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~-~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 175 LDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH-EKSISD-MQFSPDLTYFITSSRDTNSFLVDVSTLQV 252 (369)
T ss_dssp CCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC-SSCEEE-EEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred ccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC-CCceeE-EEECCCCCEEEEecCCceEEEEECCCCce
Confidence 89999999 44999999999999999998 6777777765 344555 69999999999999999999999764 4
Q ss_pred eeeeecccceEEEEEe--cCCEEEEEeCCC--------------eEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC
Q 008820 457 MKSMQTHKGSVFAVFL--EGKWLFTGGWDK--------------TVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG 520 (552)
Q Consensus 457 ~~~~~~h~~~v~~v~~--~~~~l~sgs~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 520 (552)
...+. +...+.++.+ +++++++++.++ .+++||..+++....+..+ ...|.+++|+++
T Consensus 253 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-----~~~v~~~~~s~~ 326 (369)
T 3zwl_B 253 LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH-----FGPLNTVAISPQ 326 (369)
T ss_dssp EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC-----SSCEEEEEECTT
T ss_pred eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc-----cCcEEEEEECCC
Confidence 44444 6777877776 899999999988 8999999988776665432 667999999953
Q ss_pred --eEEEEeCCCeEEEEEecC
Q 008820 521 --KLFVGCADRTVKIALCNR 538 (552)
Q Consensus 521 --~l~s~s~Dg~v~iw~~~~ 538 (552)
.|++++.||.|++|+++.
T Consensus 327 ~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 327 GTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp SSEEEEEETTSEEEEEEECH
T ss_pred CCEEEEEcCCCeEEEEECcc
Confidence 599999999999999973
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=295.62 Aligned_cols=283 Identities=23% Similarity=0.356 Sum_probs=221.2
Q ss_pred EEEeecCccceEEEEEc---CCEEEEEeCCCcEEEEeCCC-----CeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCc
Q 008820 245 FKDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKD-----FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGG 316 (552)
Q Consensus 245 ~~~l~~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~-----~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~ 316 (552)
...+++|.+.|++++|+ +++|+||+.|++|++||+.+ +.....+.+|...|.+++|+|++. +|++|+.||+
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~-~l~sgs~Dg~ 453 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ-FALSGSWDGE 453 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSE
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC-EEEEEeCCCc
Confidence 34689999999999998 57999999999999999875 356678899999999999999654 8899999999
Q ss_pred EEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEe---cCCCCCeEEEEEeC-
Q 008820 317 IFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM---SGHKSAVSTLAVCN- 392 (552)
Q Consensus 317 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~~~- 392 (552)
|++||+.++... ..+..|... ....++++++++|++|+.|++|++||.......... .+|...|.+++|++
T Consensus 454 v~vwd~~~~~~~---~~~~~h~~~--v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 454 LRLWDLAAGVST---RRFVGHTKD--VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp EEEEETTTTEEE---EEEECCSSC--EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred EEEEECCCCcce---eEEeCCCCC--EEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence 999999876433 333333321 223578889999999999999999998655433322 46889999999983
Q ss_pred ---CEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcc--eeeeecccceE
Q 008820 393 ---GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF--MKSMQTHKGSV 467 (552)
Q Consensus 393 ---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~h~~~v 467 (552)
..+++++.|++|++||+++++....+..| .+.+.+ ++++|++++|++|+.||.|++||+.+. +..+. +...+
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h-~~~v~~-v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v 605 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGH-TGYVST-VAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVI 605 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEE-EEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCE
T ss_pred CCcceEEEEeCCCeEEEEECCCCcEEEEEcCC-CCCEEE-EEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcE
Confidence 37999999999999999999988888776 345555 699999999999999999999997643 33443 34568
Q ss_pred EEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCc--------------ccCcceEEEEEeC--CeEEEEeCCC
Q 008820 468 FAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAI--------------PCGSVITALLYWQ--GKLFVGCADR 529 (552)
Q Consensus 468 ~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~--------------~~~~~v~~l~~~~--~~l~s~s~Dg 529 (552)
.++.| ++.+|++++ |+.|++||++++.....+...... .....+++++|++ ..|++|+.||
T Consensus 606 ~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg 684 (694)
T 3dm0_A 606 HALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG 684 (694)
T ss_dssp EEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence 87776 677776665 667999999988766544321110 0112378899995 3599999999
Q ss_pred eEEEEEec
Q 008820 530 TVKIALCN 537 (552)
Q Consensus 530 ~v~iw~~~ 537 (552)
.|++|++.
T Consensus 685 ~i~iW~i~ 692 (694)
T 3dm0_A 685 VIRVWGIG 692 (694)
T ss_dssp EEEEEEC-
T ss_pred eEEEEecc
Confidence 99999986
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=263.57 Aligned_cols=269 Identities=16% Similarity=0.260 Sum_probs=226.1
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEE
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVH 286 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~ 286 (552)
+...+..+.+++.++.++++..++.+++|+ +.+|...|.+++|+ +++|++|+.|+.|++||+.+++.+.
T Consensus 22 h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 101 (312)
T 4ery_A 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 101 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred cCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEE
Confidence 344588889999999999999999999987 46899999999999 8999999999999999999999999
Q ss_pred EEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEE
Q 008820 287 TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKA 366 (552)
Q Consensus 287 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~i 366 (552)
.+.+|...|.+++|+|++. ++++|+.|+.|++||++++.... .+..+.. .....+++++++++++|+.||.|++
T Consensus 102 ~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~ 175 (312)
T 4ery_A 102 TLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLK---TLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRI 175 (312)
T ss_dssp EEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEE---EECCCSS--CEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEE---EecCCCC--cEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 9999999999999999654 78999999999999998764332 2222222 1234577889999999999999999
Q ss_pred EECCCCceeEEec-CCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceE-EEEEEcCCCCEEEEE
Q 008820 367 WSLLDGTLSCTMS-GHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVS-SVLSLTAVQHTLVVS 442 (552)
Q Consensus 367 wd~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~l~~g 442 (552)
||+++++.+..+. .+...+.+++|+ +.++++++.|+.|++||+++++.+..+..+...... ......+++.++++|
T Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 255 (312)
T 4ery_A 176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255 (312)
T ss_dssp EETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEEC
T ss_pred EECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEE
Confidence 9999998887764 566789999999 349999999999999999999999888776443222 222345778999999
Q ss_pred ECCCcEEEEeCC--cceeeeecccceEEEEEe--cCCEEEEEe--CCCeEEEEecC
Q 008820 443 HESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGG--WDKTVSVQELA 492 (552)
Q Consensus 443 ~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~sgs--~dg~i~iwd~~ 492 (552)
+.||.|++||+. +.+..+.+|...|.++++ ++.++++++ .|++|++|+.+
T Consensus 256 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 256 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 999999999965 467788999999999887 889999987 69999999864
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=274.73 Aligned_cols=265 Identities=19% Similarity=0.334 Sum_probs=214.4
Q ss_pred CccccceeeecCcceEEEeeCCCeEEEEEe---------ecCc------------------cceEEEEEc--CCEEEEEe
Q 008820 219 GADIDQARAAGGVKDLVNGLSKGNVKFKDL---------QGHR------------------DCVTGLAVG--GGFLFSSS 269 (552)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~H~------------------~~V~~l~~s--~~~l~s~s 269 (552)
...+..+.++++++.++++. ++.+++|.+ .+|. ..|++++|+ +++|++|+
T Consensus 64 ~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~ 142 (393)
T 1erj_A 64 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 142 (393)
T ss_dssp SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc
Confidence 34578888999999888875 567777763 3332 249999999 89999999
Q ss_pred CCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEe
Q 008820 270 FDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALT 349 (552)
Q Consensus 270 ~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (552)
.|++|++||+.+++.+..+.+|...|.+++|+|++. ++++++.|++|++||++++.....+. ... .....+++
T Consensus 143 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~---~v~~~~~~ 215 (393)
T 1erj_A 143 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLS---IED---GVTTVAVS 215 (393)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEE---CSS---CEEEEEEC
T ss_pred CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEEE---cCC---CcEEEEEE
Confidence 999999999999999999999999999999999765 77999999999999998764332221 111 12334677
Q ss_pred e-CCCEEEEeeCCCcEEEEECCCCceeEEe-------cCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCc------
Q 008820 350 T-SGRYLYTGSGDRTIKAWSLLDGTLSCTM-------SGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHS------ 413 (552)
Q Consensus 350 ~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~-------~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~------ 413 (552)
+ +++++++|+.||.|++||+++++.+..+ .+|...|.+++|+ +.+|++|+.|++|++||+++..
T Consensus 216 ~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~ 295 (393)
T 1erj_A 216 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 295 (393)
T ss_dssp STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccccc
Confidence 7 7889999999999999999999888776 5799999999999 3499999999999999997643
Q ss_pred ------eeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEe--------cCCEE
Q 008820 414 ------LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--------EGKWL 477 (552)
Q Consensus 414 ------~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--------~~~~l 477 (552)
+...+..| ...+.+ +++++++.+|++|+.|+.|++||.. +.+..+.+|...|.++.+ ++.+|
T Consensus 296 ~~~~~~~~~~~~~h-~~~v~~-~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l 373 (393)
T 1erj_A 296 TPNSGTCEVTYIGH-KDFVLS-VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 373 (393)
T ss_dssp -----CEEEEEECC-SSCEEE-EEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEE
T ss_pred CCCCCcceEEEecc-cCcEEE-EEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEE
Confidence 34445544 344555 6999999999999999999999964 567788999999999986 36799
Q ss_pred EEEeCCCeEEEEecCC
Q 008820 478 FTGGWDKTVSVQELAG 493 (552)
Q Consensus 478 ~sgs~dg~i~iwd~~~ 493 (552)
++|+.||+|++|++..
T Consensus 374 ~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 374 ATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEETTSEEEEEEEEE
T ss_pred EEECCCCcEEECcccc
Confidence 9999999999999864
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=276.02 Aligned_cols=267 Identities=15% Similarity=0.172 Sum_probs=209.2
Q ss_pred ccccceeeecCcceEEEeeC------CCeEEEEE-------------eecCccceEEEEEc-CCEEEEEeCCCcEEEEeC
Q 008820 220 ADIDQARAAGGVKDLVNGLS------KGNVKFKD-------------LQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSL 279 (552)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-------------l~~H~~~V~~l~~s-~~~l~s~s~dg~I~iwd~ 279 (552)
..+.++++++++..++++.. ++.+.+|. ..+|.+.|++++|+ ...+++++.||+|+|||+
T Consensus 43 ~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~ 122 (357)
T 4g56_B 43 VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEI 122 (357)
T ss_dssp SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--
T ss_pred CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeec
Confidence 45889999999999999886 56677764 24689999999999 677888999999999999
Q ss_pred CCCeEEE----EEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCC-E
Q 008820 280 KDFSHVH----TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-Y 354 (552)
Q Consensus 280 ~~~~~~~----~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 354 (552)
.+++... ...+|...|++++|+|++. +|++|+.|++|++||++++.... .+..+.. . ....+++++++ .
T Consensus 123 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~~~~---~~~~h~~-~-v~~v~~s~~~~~~ 196 (357)
T 4g56_B 123 LEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKAVLK---SYNAHSS-E-VNCVAACPGKDTI 196 (357)
T ss_dssp ------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTEEEE---EECCCSS-C-EEEEEECTTCSSC
T ss_pred cccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEE---EEcCCCC-C-EEEEEEccCCCce
Confidence 8876543 3458999999999999665 78999999999999998764333 3333332 1 22346677765 8
Q ss_pred EEEeeCCCcEEEEECCCCceeEEe--cCCCCCeEEEEEe---CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEE
Q 008820 355 LYTGSGDRTIKAWSLLDGTLSCTM--SGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSV 429 (552)
Q Consensus 355 l~sgs~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 429 (552)
+++++.||.|++||++++++...+ ..|...+++++|+ +.+|++|+.|+.|++||+++++.+..+..+. ..+.+
T Consensus 197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~- 274 (357)
T 4g56_B 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHS-QNITG- 274 (357)
T ss_dssp EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCS-SCEEE-
T ss_pred eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccc-eeEEE-
Confidence 999999999999999998877655 4567789999998 2389999999999999999999999888763 44555
Q ss_pred EEEcCCC-CEEEEEECCCcEEEEeCCc-ceeeeecccceEEEEEe---cCCEEEEEeCCCeEEEEecCCC
Q 008820 430 LSLTAVQ-HTLVVSHESGSIKVWRNDK-FMKSMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQELAGD 494 (552)
Q Consensus 430 ~~~s~~~-~~l~~g~~dg~i~iwd~~~-~~~~~~~h~~~v~~v~~---~~~~l~sgs~dg~i~iwd~~~~ 494 (552)
++|+|++ ++|++|+.|++|+|||... ......+|...|++++| ++.+|++++.||+|++||+.+.
T Consensus 275 l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 275 LAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 6999987 5799999999999999653 23344589999999986 6889999999999999999754
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-32 Score=266.12 Aligned_cols=266 Identities=17% Similarity=0.299 Sum_probs=209.0
Q ss_pred ccccceee-----ec-CcceEEEeeCCCeEEEEEe----------------ecCccceEEEEEc--CCEEEEEeCCCcEE
Q 008820 220 ADIDQARA-----AG-GVKDLVNGLSKGNVKFKDL----------------QGHRDCVTGLAVG--GGFLFSSSFDKSIH 275 (552)
Q Consensus 220 ~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~l----------------~~H~~~V~~l~~s--~~~l~s~s~dg~I~ 275 (552)
..+..+.+ .+ ++..++++..++.+++|++ .+|...|++++|+ +.++++|+.|++|+
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~ 101 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEE
T ss_pred hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEE
Confidence 34556655 44 6778999999999999874 5799999999999 89999999999999
Q ss_pred EEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCC---
Q 008820 276 VWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSG--- 352 (552)
Q Consensus 276 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 352 (552)
+||+.+++.+..+.+|...|.+++|+|++. ++++++.|++|++||+.... .........+. ......+++|++
T Consensus 102 lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~--~~v~~~~~~~~~~~~ 177 (343)
T 2xzm_R 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGEC-KFSSAEKENHS--DWVSCVRYSPIMKSA 177 (343)
T ss_dssp EEETTSSCEEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCE-EEECCTTTSCS--SCEEEEEECCCCCSC
T ss_pred EEECCCCcEEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCc-eeeeecccCCC--ceeeeeeeccccccc
Confidence 999999999999999999999999999765 77999999999999987321 11111111121 122334566655
Q ss_pred -------CEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCC-CceeEEEecCC
Q 008820 353 -------RYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSD-HSLLTVLEEDS 422 (552)
Q Consensus 353 -------~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~ 422 (552)
.++++++.||.|++|| .+.+....+.+|...|++++|+ +.+|++|+.|++|++||+++ ......+...
T Consensus 178 ~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~- 255 (343)
T 2xzm_R 178 NKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAG- 255 (343)
T ss_dssp SCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECS-
T ss_pred cccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCC-
Confidence 6899999999999999 4667788899999999999999 34999999999999999954 4445555432
Q ss_pred CCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--cee--eee-----------cccceEEEEEe--cCCEEEEEeCCCe
Q 008820 423 SGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMK--SMQ-----------THKGSVFAVFL--EGKWLFTGGWDKT 485 (552)
Q Consensus 423 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~--~~~-----------~h~~~v~~v~~--~~~~l~sgs~dg~ 485 (552)
..+.. ++|+|++.+++++ .|+.|++||+.. ... .+. +|...|.+++| ++++|++|+.||.
T Consensus 256 -~~v~~-v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~ 332 (343)
T 2xzm_R 256 -STINQ-IAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGV 332 (343)
T ss_dssp -SCEEE-EEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSE
T ss_pred -CcEEE-EEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCce
Confidence 23444 7999999887755 577899999643 211 332 68888999887 8999999999999
Q ss_pred EEEEecCCC
Q 008820 486 VSVQELAGD 494 (552)
Q Consensus 486 i~iwd~~~~ 494 (552)
|++|+++++
T Consensus 333 v~~w~~~~g 341 (343)
T 2xzm_R 333 IRTFSFETS 341 (343)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEcc
Confidence 999998754
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-32 Score=270.49 Aligned_cols=283 Identities=13% Similarity=0.103 Sum_probs=224.4
Q ss_pred eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCe--EEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC
Q 008820 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS--HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (552)
Q Consensus 248 l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (552)
+..|.++|++++|+ +++|++|+.|+.|++||+.+++ .+..+.+|...|.+++|+|++ .++++++.||.|++||+.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC-CEEEEEcCCCeEEEEECC
Confidence 45699999999999 8999999999999999999987 889999999999999999965 478999999999999997
Q ss_pred CCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCce---e-EEecCCCCCeEEEEEe--CCEEEE
Q 008820 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTL---S-CTMSGHKSAVSTLAVC--NGVLYS 397 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~---~-~~~~~h~~~v~~l~~~--~~~l~s 397 (552)
+........ ...+. ......++++++++|++|+.||.|++||++.++. . ....+|...|.+++|+ +.++++
T Consensus 83 ~~~~~~~~~-~~~~~--~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 159 (372)
T 1k8k_C 83 GRTWKPTLV-ILRIN--RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 159 (372)
T ss_dssp TTEEEEEEE-CCCCS--SCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred CCeeeeeEE-eecCC--CceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence 654222211 11111 1223457888999999999999999999988763 2 3336789999999999 349999
Q ss_pred EeCCCcEEEEECC------------------CCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cce
Q 008820 398 GSRDGTIRLWSLS------------------DHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFM 457 (552)
Q Consensus 398 ~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~ 457 (552)
++.||.|++||++ .++.+..+..+ ...+.. ++|+|++++|++++.||.|++||.+ +.+
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS-CGWVHG-VCFSANGSRVAWVSHDSTVCLADADKKMAV 237 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC-SSCEEE-EEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred EcCCCCEEEEEcccccccccccccccccccchhhheEecCCC-CCeEEE-EEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence 9999999999954 56777777654 344555 6999999999999999999999964 577
Q ss_pred eeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCC--Ceeeee----------------------------ec----
Q 008820 458 KSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAG--DEFEED----------------------------VI---- 501 (552)
Q Consensus 458 ~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~--~~~~~~----------------------------~~---- 501 (552)
..+..|...|.++.| ++.+|++| .|+.|++||+.+ +..... ..
T Consensus 238 ~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (372)
T 1k8k_C 238 ATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA 316 (372)
T ss_dssp EEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-------
T ss_pred EEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcc
Confidence 888899999998887 77777777 899999999987 421110 00
Q ss_pred --cCCCcccCcceEEEEEe-C-----CeEEEEeCCCeEEEEEec
Q 008820 502 --PTGAIPCGSVITALLYW-Q-----GKLFVGCADRTVKIALCN 537 (552)
Q Consensus 502 --~~~~~~~~~~v~~l~~~-~-----~~l~s~s~Dg~v~iw~~~ 537 (552)
......+...|++++|. + ..|++|+.||.|++|+++
T Consensus 317 ~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 317 AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp --CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred ccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence 00111357789999866 3 469999999999999997
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=279.69 Aligned_cols=257 Identities=24% Similarity=0.438 Sum_probs=219.3
Q ss_pred CcceEEEeeCCCeEEEEE---------eecCccceEEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEE
Q 008820 230 GVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVY 300 (552)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~ 300 (552)
+++.++++..++.+.+|+ +.+|.+.|++++|++++|++|+.||+|++||+.+++.+..+.+|...|.+++|
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~ 221 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF 221 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEE
Confidence 677888999999988887 56899999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecC
Q 008820 301 VDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSG 380 (552)
Q Consensus 301 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~ 380 (552)
++ ..+++|+.||.|++||+.++...........+. ..+.++.++++++++|+.||.|++||+++++.+..+.+
T Consensus 222 ~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 294 (435)
T 1p22_A 222 NN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR----AAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG 294 (435)
T ss_dssp CT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCS----SCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred cC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCC----CcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcC
Confidence 64 388999999999999998765543333333332 24567777999999999999999999999999999999
Q ss_pred CCCCeEEEEEeCCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc-----
Q 008820 381 HKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK----- 455 (552)
Q Consensus 381 h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~----- 455 (552)
|...|.++.++++++++|+.||.|++||+++++.+..+..+. ..+.+ +++ ++.++++|+.||.|++||...
T Consensus 295 ~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~-~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~ 370 (435)
T 1p22_A 295 HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHE-ELVRC-IRF--DNKRIVSGAYDGKIKVWDLVAALDPR 370 (435)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEE-EEC--CSSEEEEEETTSCEEEEEHHHHTSTT
T ss_pred CCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCc-CcEEE-EEe--cCCEEEEEeCCCcEEEEECCCCCCcc
Confidence 999999999998899999999999999999999999988763 44443 344 889999999999999999532
Q ss_pred ------ceeeeecccceEEEEEecCCEEEEEeCCCeEEEEecCCCeee
Q 008820 456 ------FMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFE 497 (552)
Q Consensus 456 ------~~~~~~~h~~~v~~v~~~~~~l~sgs~dg~i~iwd~~~~~~~ 497 (552)
....+.+|...|.++.+++.+|++|+.||.|++||+.+....
T Consensus 371 ~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 371 APAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp SCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC-------
T ss_pred ccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCCCc
Confidence 567888999999999999999999999999999999876543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-32 Score=310.93 Aligned_cols=321 Identities=15% Similarity=0.214 Sum_probs=260.7
Q ss_pred CCCccccceeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEE
Q 008820 217 SDGADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHV 285 (552)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~ 285 (552)
.+...+..+.++++++.++++..++.+.+|+ +.+|.+.|++++|+ ++++++|+.||+|++||+.+++.+
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~ 692 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLV 692 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceE
Confidence 3456688899999999999999999999987 56899999999999 899999999999999999999999
Q ss_pred EEEeCCCCCeEEEEEecC-CCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcE
Q 008820 286 HTFKGHDHKVMAVVYVDE-DQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTI 364 (552)
Q Consensus 286 ~~~~~h~~~v~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i 364 (552)
..+.+|...|.+++|+|+ +..++++|+.|+.|++||+.++..... ...+.. .....+++++++.+++|+.||.|
T Consensus 693 ~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~---~~~h~~--~v~~~~~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 693 HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT---MFGHTN--SVNHCRFSPDDELLASCSADGTL 767 (1249)
T ss_dssp EEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE---ECCCSS--CEEEEEECSSTTEEEEEESSSEE
T ss_pred EEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhe---ecCCCC--CEEEEEEecCCCEEEEEECCCeE
Confidence 999999999999999986 445889999999999999987654333 223322 22345788999999999999999
Q ss_pred EEEECCCCceeEEe-------------------------------------------------------cCCCCCeEEEE
Q 008820 365 KAWSLLDGTLSCTM-------------------------------------------------------SGHKSAVSTLA 389 (552)
Q Consensus 365 ~iwd~~~~~~~~~~-------------------------------------------------------~~h~~~v~~l~ 389 (552)
++||+.+++....+ .+|...|.+++
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~ 847 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 847 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence 99998776543332 26788899999
Q ss_pred Ee--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC-------------
Q 008820 390 VC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND------------- 454 (552)
Q Consensus 390 ~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~------------- 454 (552)
|+ +..+++++.||.|++||+.++..+..+..+ ...+.+ ++|+|+++++++++.||.|++||..
T Consensus 848 ~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h-~~~v~~-v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~ 925 (1249)
T 3sfz_A 848 FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH-LSWVHG-VMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE 925 (1249)
T ss_dssp ECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC-SSCEEE-EEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC-ccceEE-EEECCCCCEEEEEeCCCeEEEEEccccceeeeecccce
Confidence 99 449999999999999999999988888765 344444 6888888888888888888888732
Q ss_pred --------------------------------------------------------------------cceeeeecccce
Q 008820 455 --------------------------------------------------------------------KFMKSMQTHKGS 466 (552)
Q Consensus 455 --------------------------------------------------------------------~~~~~~~~h~~~ 466 (552)
+....+.+|...
T Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~ 1005 (1249)
T 3sfz_A 926 IDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA 1005 (1249)
T ss_dssp EEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSC
T ss_pred eeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCc
Confidence 122334567778
Q ss_pred EEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-CeEEEEeCCCeEEEEEecCCccee
Q 008820 467 VFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-GKLFVGCADRTVKIALCNRQIPEI 543 (552)
Q Consensus 467 v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~s~s~Dg~v~iw~~~~~~~~~ 543 (552)
|.++.| ++++|++++.||.|++||+.+++..... .+...|.++++++ +.+++++.||.|++||+. +....
T Consensus 1006 v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~------~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~-~~~~~ 1078 (1249)
T 3sfz_A 1006 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ------AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI-TGRIE 1078 (1249)
T ss_dssp CCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCB------CCSSCEEEEEECSSSEEEEEESSSEEEEEETT-TTCCC
T ss_pred eEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEe------cCCCcEEEEEEcCCCcEEEEECCCcEEEEECC-CCcee
Confidence 877776 8889999999999999999887665432 2366799999995 669999999999999997 55667
Q ss_pred EEEecccc
Q 008820 544 FSLLLHIN 551 (552)
Q Consensus 544 ~~~~gh~~ 551 (552)
..+.+|.+
T Consensus 1079 ~~~~~~~~ 1086 (1249)
T 3sfz_A 1079 RDFTCHQG 1086 (1249)
T ss_dssp EEEECCSS
T ss_pred EEEcccCC
Confidence 77777753
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=282.00 Aligned_cols=282 Identities=13% Similarity=0.111 Sum_probs=210.1
Q ss_pred eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCC--eEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC
Q 008820 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF--SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (552)
Q Consensus 248 l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (552)
+..|.++|++++|+ +++|++|+.|+.|++||+.++ +.+..+.+|...|.+++|+|++. +|++++.|++|++||+.
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSN-RIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTC-CEEEEETTSSEEEC---
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCC-EEEEEeCCCeEEEEEcC
Confidence 34577899999999 899999999999999999988 77888999999999999999765 77999999999999998
Q ss_pred CCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCc---eeEEecC-CCCCeEEEEEe--CCEEEE
Q 008820 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT---LSCTMSG-HKSAVSTLAVC--NGVLYS 397 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~---~~~~~~~-h~~~v~~l~~~--~~~l~s 397 (552)
++...........+.. .....++++++++|++|+.|+.|++||+++++ ....+.+ |...|++++|+ +.+|++
T Consensus 86 ~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNR--AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp ---CCCCEEECCCCSS--CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred CCCceeeeeEecccCC--ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 7652223333333332 22345678889999999999999999999887 4777877 99999999999 349999
Q ss_pred EeCCCcEEEEECCC------------------CceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--c-
Q 008820 398 GSRDGTIRLWSLSD------------------HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--F- 456 (552)
Q Consensus 398 ~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~- 456 (552)
++.|++|++||++. ++++..+ .+...+.+ ++|+|++++|++++.||.|++||... .
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~-~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~ 240 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHA-VGFSPSGNALAYAGHDSSVTIAYPSAPEQP 240 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEE-EEECTTSSCEEEEETTTEEC-CEECSTTSC
T ss_pred EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEE-EEECCCCCEEEEEeCCCcEEEEECCCCCCc
Confidence 99999999999953 3344444 34455555 69999999999999999999999653 3
Q ss_pred ---eeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeee--eeec----------------------------
Q 008820 457 ---MKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFE--EDVI---------------------------- 501 (552)
Q Consensus 457 ---~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~--~~~~---------------------------- 501 (552)
+..+.+|...|.++.| ++++|++|+.|+.+ +|+....... ....
T Consensus 241 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (377)
T 3dwl_C 241 PRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTA 319 (377)
T ss_dssp EEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC--------
T ss_pred ceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccccccc
Confidence 6788899999999887 88999988866665 6666522100 0000
Q ss_pred -----------------cCCCcccCcceEEEEEeC---C---eEEEEeCCCeEEEEEe
Q 008820 502 -----------------PTGAIPCGSVITALLYWQ---G---KLFVGCADRTVKIALC 536 (552)
Q Consensus 502 -----------------~~~~~~~~~~v~~l~~~~---~---~l~s~s~Dg~v~iw~~ 536 (552)
......|...|+++.+.+ + .++||+.||.|++||+
T Consensus 320 ~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 320 LRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -----------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 000012567899998763 2 4999999999999985
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-32 Score=266.22 Aligned_cols=292 Identities=18% Similarity=0.236 Sum_probs=220.7
Q ss_pred CeEEEEEeecCccceEEEEEc--C-CEEEEEeC---CCcEEEEeCCCCeEEEEE-eCCCCCeEEEEEecCC--CCEEEEE
Q 008820 241 GNVKFKDLQGHRDCVTGLAVG--G-GFLFSSSF---DKSIHVWSLKDFSHVHTF-KGHDHKVMAVVYVDED--QPLCISG 311 (552)
Q Consensus 241 ~~~~~~~l~~H~~~V~~l~~s--~-~~l~s~s~---dg~I~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~~--~~~l~s~ 311 (552)
..+....+.+|.+.|++++|+ + .++++|+. |++|++||+.+++..... .+|...|.+++|+|++ +.+++++
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence 334455678999999999999 5 45566766 999999999998776543 3799999999999984 5688999
Q ss_pred cCCCcEEEEeCCCCCCCccccccccCCCceeeeEE-----EEeeCCCEEEEeeCCCcEEEEECCCCc-eeEEecCCCC--
Q 008820 312 DSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIH-----ALTTSGRYLYTGSGDRTIKAWSLLDGT-LSCTMSGHKS-- 383 (552)
Q Consensus 312 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~h~~-- 383 (552)
+.||.|++||+.++. .....+..+.. ....+. +++++++.|++|+.||.|++||+++++ .+..+..|.+
T Consensus 87 ~~dg~i~iwd~~~~~--~~~~~~~~~~~-~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 163 (357)
T 3i2n_A 87 DFGGNLHIWNLEAPE--MPVYSVKGHKE-IINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN 163 (357)
T ss_dssp ETTSCEEEECTTSCS--SCSEEECCCSS-CEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC
T ss_pred cCCCeEEEEeCCCCC--ccEEEEEeccc-ceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC
Confidence 999999999998765 12233333332 222221 346788899999999999999999887 7778866655
Q ss_pred --CeEEEEE----e--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcC---CCCEEEEEECCCcEEEEe
Q 008820 384 --AVSTLAV----C--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA---VQHTLVVSHESGSIKVWR 452 (552)
Q Consensus 384 --~v~~l~~----~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~~g~~dg~i~iwd 452 (552)
.+.+++| + +.++++++.|+.|++||+++++....... ...+.+ ++|+| +++++++++.||.|++||
T Consensus 164 ~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~v~~-~~~~~~~~~~~~l~~~~~dg~i~i~d 240 (357)
T 3i2n_A 164 KRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNI--KNGVCS-LEFDRKDISMNKLVATSLEGKFHVFD 240 (357)
T ss_dssp CCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEE-EEESCSSSSCCEEEEEESTTEEEEEE
T ss_pred CCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCC--CCceEE-EEcCCCCCCCCEEEEECCCCeEEEEe
Confidence 8999984 4 45999999999999999999987655433 344555 69999 999999999999999999
Q ss_pred CCc--ceeee-----ecccceEEEEEe--cCC-EEEEEeCCCeEEEEecCCCeeeeeecc--------------CCCccc
Q 008820 453 NDK--FMKSM-----QTHKGSVFAVFL--EGK-WLFTGGWDKTVSVQELAGDEFEEDVIP--------------TGAIPC 508 (552)
Q Consensus 453 ~~~--~~~~~-----~~h~~~v~~v~~--~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~--------------~~~~~~ 508 (552)
.+. ....+ .+|...|.++.+ ++. +|++++.||.|++||++.......... .....+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (357)
T 3i2n_A 241 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS 320 (357)
T ss_dssp EEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC
T ss_pred CcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC
Confidence 653 33333 489999999987 566 899999999999999975432210000 001123
Q ss_pred CcceEEEEEeCC--eEE-EEeCCCeEEEEEecC
Q 008820 509 GSVITALLYWQG--KLF-VGCADRTVKIALCNR 538 (552)
Q Consensus 509 ~~~v~~l~~~~~--~l~-s~s~Dg~v~iw~~~~ 538 (552)
...|.+++|+++ .|+ +++.||.|++|++..
T Consensus 321 ~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 321 TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 677999999964 376 899999999999973
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=271.17 Aligned_cols=279 Identities=13% Similarity=0.174 Sum_probs=225.1
Q ss_pred EEEeecCccceEEEEEc--CC-EEEEEeCCCcEEEEeC----CCCe------EEEEEeC----------CCCCeEEEEEe
Q 008820 245 FKDLQGHRDCVTGLAVG--GG-FLFSSSFDKSIHVWSL----KDFS------HVHTFKG----------HDHKVMAVVYV 301 (552)
Q Consensus 245 ~~~l~~H~~~V~~l~~s--~~-~l~s~s~dg~I~iwd~----~~~~------~~~~~~~----------h~~~v~~v~~~ 301 (552)
......|.++|++++|+ ++ +|++|+.||.|++||+ .+++ ....+.. |.+.|++++|+
T Consensus 38 ~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 117 (425)
T 1r5m_A 38 ILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS 117 (425)
T ss_dssp ECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEEC
T ss_pred heeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEc
Confidence 33345677999999999 77 9999999999999999 8888 5666655 68899999999
Q ss_pred cCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCC
Q 008820 302 DEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGH 381 (552)
Q Consensus 302 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h 381 (552)
|++ .+|++++.||.|++||.. + ..+..+..+.. .....++++++++|++++.||.|++||+.+++.+..+..+
T Consensus 118 ~~~-~~l~~~~~dg~i~i~~~~-~---~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 190 (425)
T 1r5m_A 118 HDG-NSIVTGVENGELRLWNKT-G---ALLNVLNFHRA--PIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELK 190 (425)
T ss_dssp TTS-SEEEEEETTSCEEEEETT-S---CEEEEECCCCS--CEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred CCC-CEEEEEeCCCeEEEEeCC-C---CeeeeccCCCc--cEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeecc
Confidence 965 478999999999999932 2 22333333322 2234577888999999999999999999999999999888
Q ss_pred CCC---------------eEEEEEe-CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECC
Q 008820 382 KSA---------------VSTLAVC-NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES 445 (552)
Q Consensus 382 ~~~---------------v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 445 (552)
... +.++.|+ ++.+++++.||.|++||+++++.+..+..+ ...+.. ++++|++++|++++.|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~-~~~i~~-~~~~~~~~~l~~~~~d 268 (425)
T 1r5m_A 191 ETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGH-HGPISV-LEFNDTNKLLLSASDD 268 (425)
T ss_dssp ---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCC-SSCEEE-EEEETTTTEEEEEETT
T ss_pred ccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccC-CCceEE-EEECCCCCEEEEEcCC
Confidence 777 9999999 779999999999999999999988888765 344444 6999999999999999
Q ss_pred CcEEEEeCC--cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--
Q 008820 446 GSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-- 519 (552)
Q Consensus 446 g~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-- 519 (552)
|.|++||.. +....+..|...|.++.+ ++ ++++++.|+.|++||+.+++.......+ ...|.+++|++
T Consensus 269 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~i~~~~~s~~~ 342 (425)
T 1r5m_A 269 GTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD-----GVPIFAGRISQDG 342 (425)
T ss_dssp SCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT-----TCCEEEEEECTTS
T ss_pred CEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC-----CccEEEEEEcCCC
Confidence 999999965 467788889999999988 56 9999999999999999988776655432 56799999995
Q ss_pred CeEEEEeCCCeEEEEEecC
Q 008820 520 GKLFVGCADRTVKIALCNR 538 (552)
Q Consensus 520 ~~l~s~s~Dg~v~iw~~~~ 538 (552)
..|++++.||.|++|+++.
T Consensus 343 ~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 343 QKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp SEEEEEETTSCEEEEECHH
T ss_pred CEEEEEECCCeEEEEECCC
Confidence 3599999999999999983
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-32 Score=260.57 Aligned_cols=243 Identities=14% Similarity=0.228 Sum_probs=195.4
Q ss_pred EEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCC--CeEEEEEeCCCCCeEEEEEecC-CCCEEEEEcCCCcEEEE
Q 008820 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD--FSHVHTFKGHDHKVMAVVYVDE-DQPLCISGDSGGGIFVW 320 (552)
Q Consensus 246 ~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~--~~~~~~~~~h~~~v~~v~~~~~-~~~~l~s~~~dg~i~vw 320 (552)
..+.+|.+.|++++|+ +++|++|+.|++|+|||+.+ .+.+.++.+|.++|.+++|+++ .+.+|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 4578999999999999 99999999999999999974 4678899999999999999864 36789999999999999
Q ss_pred eCCCCCCCccccccccCCCceeeeEEEEeeC--CCEEEEeeCCCcEEEEECCCCc--eeEEecCCCCCeEEEEEeC----
Q 008820 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTS--GRYLYTGSGDRTIKAWSLLDGT--LSCTMSGHKSAVSTLAVCN---- 392 (552)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~sgs~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~---- 392 (552)
|++++... .+..+..+.. .....+++|+ +.+|++|+.|+.|++||++++. ....+.+|...|.+++|++
T Consensus 83 d~~~~~~~-~~~~~~~h~~--~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 83 KEENGRWS-QIAVHAVHSA--SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (297)
T ss_dssp EBSSSCBC-CCEEECCCSS--CEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--
T ss_pred EcCCCceE-EEEEeecCCC--ceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccc
Confidence 99865321 1222222222 1233467776 7899999999999999998763 2456788999999999984
Q ss_pred -----------CEEEEEeCCCcEEEEECCCCc----eeEEEecCCCCceEEEEEEcCCC---CEEEEEECCCcEEEEeCC
Q 008820 393 -----------GVLYSGSRDGTIRLWSLSDHS----LLTVLEEDSSGAVSSVLSLTAVQ---HTLVVSHESGSIKVWRND 454 (552)
Q Consensus 393 -----------~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~s~~~---~~l~~g~~dg~i~iwd~~ 454 (552)
.+|++|+.|++|++||+++++ ....+..| ...+.+ ++|+|++ .+|++++.|++|++||..
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H-~~~V~~-v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-SDWVRD-VAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC-SSCEEE-EEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC-CCceEE-EEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 389999999999999998876 44556554 455555 6999984 899999999999999965
Q ss_pred cc-----eeee--ecccceEEEEEe--cCCEEEEEeCCCeEEEEecCC
Q 008820 455 KF-----MKSM--QTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAG 493 (552)
Q Consensus 455 ~~-----~~~~--~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~ 493 (552)
.. ...+ ..|...|.+++| ++++|++++.||.|++|+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 42 1233 467889998887 899999999999999999863
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-33 Score=282.23 Aligned_cols=282 Identities=13% Similarity=0.102 Sum_probs=207.7
Q ss_pred EeecCccceEEEEEc---CCEEEEEeCCCcEEEEeCCCCeE--EEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEe
Q 008820 247 DLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFSH--VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (552)
Q Consensus 247 ~l~~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 321 (552)
...+|...|+|++|+ +++||+|+.||+|+|||+.+++. ...+.+|.+.|++++|+|.+..+|++|+.||+|++||
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 456899999999998 67999999999999999987654 4445689999999999997778999999999999999
Q ss_pred CCCCCCCccccccccC-CCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-C--CEEEE
Q 008820 322 FSFPLGHEPLKKWNEE-KDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-N--GVLYS 397 (552)
Q Consensus 322 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~--~~l~s 397 (552)
++.... ...... .........++++++++|++|+.||.|++||++ ++.+..+.+|...|++++|+ + .++++
T Consensus 194 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s 268 (435)
T 4e54_B 194 FKGNIL----RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLAT 268 (435)
T ss_dssp TTSCEE----EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEE
T ss_pred ccCCce----eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEE
Confidence 975321 111111 111122345788999999999999999999985 56677889999999999998 2 38899
Q ss_pred EeCCCcEEEEECCCCceeEEEe--cCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeeecccce------E
Q 008820 398 GSRDGTIRLWSLSDHSLLTVLE--EDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGS------V 467 (552)
Q Consensus 398 ~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~h~~~------v 467 (552)
|+.|++|++||+++.+....+. ..+...+.+ ++|+|++++|++++.||.|++||... ....+..|... +
T Consensus 269 ~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~-~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 347 (435)
T 4e54_B 269 ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNA-ACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTP 347 (435)
T ss_dssp EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEE-CCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCC
T ss_pred ecCcceeeEEecccccccceEEEeeeccccccc-eeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccccccee
Confidence 9999999999999876544332 223445555 68999999999999999999999653 34444444321 1
Q ss_pred EE--EEecCCEEEEEe------------CCCeEEEEecCCCeeeeeeccCCCcccCcceEEE-EEeC-CeEEEEeCCCeE
Q 008820 468 FA--VFLEGKWLFTGG------------WDKTVSVQELAGDEFEEDVIPTGAIPCGSVITAL-LYWQ-GKLFVGCADRTV 531 (552)
Q Consensus 468 ~~--v~~~~~~l~sgs------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l-~~~~-~~l~s~s~Dg~v 531 (552)
.. ..+++..+++++ .++.|++||..+++....+... +...|.++ +|+| +.+++++.|+.|
T Consensus 348 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~----~~~~v~s~~~fspdg~~lasg~d~~i 423 (435)
T 4e54_B 348 IKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP----ESSGISSLNEFNPMGDTLASAMGYHI 423 (435)
T ss_dssp CBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS----SCCCCCCEEEECTTSSCEEEECSSEE
T ss_pred EEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC----CCCcEEEEEEECCCCCEEEEEcCCcE
Confidence 11 122445555443 3467999999988776654332 24456665 6885 344444558999
Q ss_pred EEEEecC
Q 008820 532 KIALCNR 538 (552)
Q Consensus 532 ~iw~~~~ 538 (552)
+||+++.
T Consensus 424 ~iW~~~~ 430 (435)
T 4e54_B 424 LIWSQQE 430 (435)
T ss_dssp EECCCC-
T ss_pred EEEECCc
Confidence 9999974
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=295.76 Aligned_cols=326 Identities=13% Similarity=0.123 Sum_probs=238.9
Q ss_pred cccceeeecCcceEEEeeCCCeEEEEEe--------------------ecCccceEEEEEc---CCEEEEEeCCCcEEEE
Q 008820 221 DIDQARAAGGVKDLVNGLSKGNVKFKDL--------------------QGHRDCVTGLAVG---GGFLFSSSFDKSIHVW 277 (552)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------------------~~H~~~V~~l~~s---~~~l~s~s~dg~I~iw 277 (552)
.+..+.+++.++.++++..++.+++|++ .+|.++|++++|+ +..+++|+.||+| +|
T Consensus 100 ~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lW 178 (902)
T 2oaj_A 100 KITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TY 178 (902)
T ss_dssp CEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EE
T ss_pred CEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EE
Confidence 4788889999999999999999999974 4588999999999 3689999999999 99
Q ss_pred eCCCCeEEEEEeCC------------------CCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcc--cc-----
Q 008820 278 SLKDFSHVHTFKGH------------------DHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP--LK----- 332 (552)
Q Consensus 278 d~~~~~~~~~~~~h------------------~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~----- 332 (552)
|+.+++++..+..| ...|.+++|+|++ .+|++|+.||+|++||+++++.... +.
T Consensus 179 d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~ 257 (902)
T 2oaj_A 179 SLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEIN 257 (902)
T ss_dssp ETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTT
T ss_pred ECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccC
Confidence 99999999998766 4779999999975 4889999999999999986543210 00
Q ss_pred --------------------cccc--CCC-ce--ee----------eE--------------------------------
Q 008820 333 --------------------KWNE--EKD-WR--YS----------GI-------------------------------- 345 (552)
Q Consensus 333 --------------------~~~~--~~~-~~--~~----------~~-------------------------------- 345 (552)
.+.. ... .. .. .+
T Consensus 258 ~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 337 (902)
T 2oaj_A 258 VPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIF 337 (902)
T ss_dssp SCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEE
T ss_pred CCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEE
Confidence 0000 000 00 00 00
Q ss_pred --------EEEe------------eCCCEEEEeeCCCcEEEEECCCCceeEE-------ecCCCCCeEEEEE--------
Q 008820 346 --------HALT------------TSGRYLYTGSGDRTIKAWSLLDGTLSCT-------MSGHKSAVSTLAV-------- 390 (552)
Q Consensus 346 --------~~~~------------~~~~~l~sgs~dg~i~iwd~~~~~~~~~-------~~~h~~~v~~l~~-------- 390 (552)
..+. .++..+++++.||.|++||+.++..... +..|...|+++++
T Consensus 338 ~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w 417 (902)
T 2oaj_A 338 PLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLW 417 (902)
T ss_dssp CCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHH
T ss_pred ecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHH
Confidence 0000 1223677777888999999877643322 2334455555544
Q ss_pred --------------------------e--CCEEEEEeCCCcEEEEECCCCcee----EEEec------CCCCceEEEEEE
Q 008820 391 --------------------------C--NGVLYSGSRDGTIRLWSLSDHSLL----TVLEE------DSSGAVSSVLSL 432 (552)
Q Consensus 391 --------------------------~--~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~------~~~~~~~~~~~~ 432 (552)
+ +++|++|+.|++|++||+.++... ..... .+...+.+ ++|
T Consensus 418 ~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~s-vaf 496 (902)
T 2oaj_A 418 LGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDK-ISF 496 (902)
T ss_dssp HHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEE-EEE
T ss_pred HHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeE-EEe
Confidence 4 238999999999999999887531 11111 33445555 699
Q ss_pred cCCCCEEEEEECCCcEEEEeCCc-----------------------------------------------ceeeeecccc
Q 008820 433 TAVQHTLVVSHESGSIKVWRNDK-----------------------------------------------FMKSMQTHKG 465 (552)
Q Consensus 433 s~~~~~l~~g~~dg~i~iwd~~~-----------------------------------------------~~~~~~~h~~ 465 (552)
+|++++|++|+.||+|++||... ++..+.+|.+
T Consensus 497 spdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~ 576 (902)
T 2oaj_A 497 AAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG 576 (902)
T ss_dssp ETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC
T ss_pred cCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCC
Confidence 99999999999999999999542 2566788999
Q ss_pred eEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCc-ccCcceEEEEEe-----CC-----eEEEEeCCCeEE
Q 008820 466 SVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAI-PCGSVITALLYW-----QG-----KLFVGCADRTVK 532 (552)
Q Consensus 466 ~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~v~~l~~~-----~~-----~l~s~s~Dg~v~ 532 (552)
.|++++| || +||+|+.|++|++||+++............. .+...|++++|+ ++ .|++|+.|++|+
T Consensus 577 ~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~ 655 (902)
T 2oaj_A 577 KTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVI 655 (902)
T ss_dssp SEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEE
T ss_pred cEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEE
Confidence 9999987 88 9999999999999999887654321111111 347789999999 65 599999999999
Q ss_pred EEEec--CCcceeEEEeccc
Q 008820 533 IALCN--RQIPEIFSLLLHI 550 (552)
Q Consensus 533 iw~~~--~~~~~~~~~~gh~ 550 (552)
+|++. .++.....|.+|.
T Consensus 656 ~wd~~p~~~g~~~~~~~~~~ 675 (902)
T 2oaj_A 656 TYKILPASGGKFDVQLMDIT 675 (902)
T ss_dssp EEEEEECGGGCEEEEEEEEE
T ss_pred EEEEecCCCCcEEEEecCce
Confidence 99992 2555677888775
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=271.63 Aligned_cols=280 Identities=14% Similarity=0.231 Sum_probs=219.6
Q ss_pred EeecCccceEEEEEc------CCEEEEEeCCCcEEEEeCCCCeEEEEEeC-----CCCCeEEEEEecCC---CCEEEEEc
Q 008820 247 DLQGHRDCVTGLAVG------GGFLFSSSFDKSIHVWSLKDFSHVHTFKG-----HDHKVMAVVYVDED---QPLCISGD 312 (552)
Q Consensus 247 ~l~~H~~~V~~l~~s------~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-----h~~~v~~v~~~~~~---~~~l~s~~ 312 (552)
...+|.++|++++|+ ...+++++.++.|++||+.+++.+..+.. |...|.+++|+|++ +.++++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 356899999999998 34577777777999999998887776654 56789999999974 35889999
Q ss_pred CCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEee-CCCEEEEeeCCCcEEEEECCCCceeEEe---cCCCCCeEEE
Q 008820 313 SGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAWSLLDGTLSCTM---SGHKSAVSTL 388 (552)
Q Consensus 313 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l 388 (552)
.||.|++||+.+++.... +..+.. .....++++ ++++|++|+.||.|++||+++++.+..+ .+|...|.++
T Consensus 93 ~dg~i~v~d~~~~~~~~~---~~~~~~--~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 167 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKH---YVGHGN--AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 167 (366)
T ss_dssp TTCEEEEECTTTCCEEEE---EESCCS--CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEE
T ss_pred CCCEEEEEEchhceEeee---ecCCCC--cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEE
Confidence 999999999987644333 332222 223346777 7889999999999999999999999988 7899999999
Q ss_pred EEe--CCEEEEEeCCCcEEEEECCCCceeEEEec---------------------------CCCCceEEEEEEcCCCCEE
Q 008820 389 AVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEE---------------------------DSSGAVSSVLSLTAVQHTL 439 (552)
Q Consensus 389 ~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------------------------~~~~~~~~~~~~s~~~~~l 439 (552)
+|+ +++|++++.||.|++||+++++....+.. .+...+.+ +.|+ ++++
T Consensus 168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~--~~~l 244 (366)
T 3k26_A 168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC-VRWL--GDLI 244 (366)
T ss_dssp EECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE-EEEE--TTEE
T ss_pred EECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE-EEEc--CCEE
Confidence 999 44999999999999999998765433321 13344554 5676 7799
Q ss_pred EEEECCCcEEEEeCCcc----------------eeeeecccceEEEEEe--c--CCEEEEEeCCCeEEEEecCCCeeee-
Q 008820 440 VVSHESGSIKVWRNDKF----------------MKSMQTHKGSVFAVFL--E--GKWLFTGGWDKTVSVQELAGDEFEE- 498 (552)
Q Consensus 440 ~~g~~dg~i~iwd~~~~----------------~~~~~~h~~~v~~v~~--~--~~~l~sgs~dg~i~iwd~~~~~~~~- 498 (552)
++++.||.|++||.++. +..+..|...|.++.+ + +++|++|+.||.|++||+.+++...
T Consensus 245 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 324 (366)
T 3k26_A 245 LSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA 324 (366)
T ss_dssp EEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC
T ss_pred EEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc
Confidence 99999999999996532 5566778888877765 6 9999999999999999999875432
Q ss_pred ---eeccCCCcccCcceEEEEEeC--CeEEEEeCCCeEEEEEec
Q 008820 499 ---DVIPTGAIPCGSVITALLYWQ--GKLFVGCADRTVKIALCN 537 (552)
Q Consensus 499 ---~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~Dg~v~iw~~~ 537 (552)
.+..+ .+...|.+++|++ ..|++++.||.|++||+.
T Consensus 325 ~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 325 KCTTLTHH---KCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEEECCT---TCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cceEEccc---ccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 22221 1257799999995 359999999999999985
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=282.83 Aligned_cols=273 Identities=10% Similarity=0.042 Sum_probs=199.7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeE----EEEEeCCCCCeEEEEEecC-----CCCEEEEEcCCCcEEEEeCCCCCCCc---
Q 008820 262 GGFLFSSSFDKSIHVWSLKDFSH----VHTFKGHDHKVMAVVYVDE-----DQPLCISGDSGGGIFVWSFSFPLGHE--- 329 (552)
Q Consensus 262 ~~~l~s~s~dg~I~iwd~~~~~~----~~~~~~h~~~v~~v~~~~~-----~~~~l~s~~~dg~i~vwd~~~~~~~~--- 329 (552)
++.+++++.|++|+|||+.+++. ..++.+|.+.|.+++|+|+ +..+|++++.||+|++||+..+....
T Consensus 173 ~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~ 252 (524)
T 2j04_B 173 LEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF 252 (524)
T ss_dssp ---------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE
T ss_pred hhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc
Confidence 56778888999999999987654 2456778899999999996 24689999999999999998654321
Q ss_pred -----cccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCc-eeEEecCCCCCeEEEE--Ee-C--CEEEEE
Q 008820 330 -----PLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT-LSCTMSGHKSAVSTLA--VC-N--GVLYSG 398 (552)
Q Consensus 330 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~--~~-~--~~l~s~ 398 (552)
+...+..+.. .....+|+++ ..|++|+.||+|++||+++++ +...+.+|...|++++ |+ + .+|++|
T Consensus 253 ~~~~~p~~~l~~h~~--~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~ 329 (524)
T 2j04_B 253 KMCEKPSLTLSLADS--LITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV 329 (524)
T ss_dssp ECCCSCSEEECCTTT--CEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred eeecCceEEEEcCCC--CEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEe
Confidence 1112222222 1122344443 589999999999999998764 5567889999999994 45 3 489999
Q ss_pred eCCCcEEEEECCCCceeEEEecCCCC-ceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeeecccceEEEEEe--c
Q 008820 399 SRDGTIRLWSLSDHSLLTVLEEDSSG-AVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAVFL--E 473 (552)
Q Consensus 399 ~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~h~~~v~~v~~--~ 473 (552)
+.|++|++||++++++...+..+... .+.+ ++|+|++..+++++.|++|++||.+. +...+.+|.+.|++++| +
T Consensus 330 S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~-v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~ 408 (524)
T 2j04_B 330 AVDGYFYIFNPKDIATTKTTVSRFRGSNLVP-VVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRL 408 (524)
T ss_dssp ETTSEEEEECGGGHHHHCEEEEECSCCSCCC-EEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSS
T ss_pred ccCCeEEEEECCCCCcccccccccccCcccc-eEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCC
Confidence 99999999999998877666654332 2334 68999999999999999999999764 45778899999999987 8
Q ss_pred CCEEEEEeCCCeEEEEecCCCeeee--------------ee--ccC------------------C-----CcccCcceEE
Q 008820 474 GKWLFTGGWDKTVSVQELAGDEFEE--------------DV--IPT------------------G-----AIPCGSVITA 514 (552)
Q Consensus 474 ~~~l~sgs~dg~i~iwd~~~~~~~~--------------~~--~~~------------------~-----~~~~~~~v~~ 514 (552)
+++|++|+.||+|++||+....+.. .. ... + -..+...|.+
T Consensus 409 g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~ 488 (524)
T 2j04_B 409 HPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITC 488 (524)
T ss_dssp CCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCC
T ss_pred CCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEE
Confidence 9999999999999999975321110 00 000 0 0124567899
Q ss_pred EEEeCC-----eEEEEeCCCeEEEEEecC
Q 008820 515 LLYWQG-----KLFVGCADRTVKIALCNR 538 (552)
Q Consensus 515 l~~~~~-----~l~s~s~Dg~v~iw~~~~ 538 (552)
++|+|+ .+++|+.||.|+||++..
T Consensus 489 Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 489 TKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp EEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred EECCCCCCccHHHHhhccCceEEEEEccc
Confidence 999975 589999999999999874
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-31 Score=266.23 Aligned_cols=281 Identities=15% Similarity=0.161 Sum_probs=224.8
Q ss_pred EEEEeecCccc--eEEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeC-CCCCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 008820 244 KFKDLQGHRDC--VTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKG-HDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (552)
Q Consensus 244 ~~~~l~~H~~~--V~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~i~vw 320 (552)
.+.+..+|.+. +.+++|+++.+++++.|+.|++||+.+++....+.. |...|.+++|+|++ .+|++|+.||.|++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 83 RVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDG-SFLSVGLGNGLVDIY 161 (401)
T ss_dssp EEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTS-SEEEEEETTSCEEEE
T ss_pred eeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCC-CEEEEECCCCeEEEE
Confidence 34556677665 566788877788999999999999999999888876 88999999999965 478999999999999
Q ss_pred eCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECC-CCceeEEecCCCCCeEEEEEe--CCEEEE
Q 008820 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLL-DGTLSCTMSGHKSAVSTLAVC--NGVLYS 397 (552)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~--~~~l~s 397 (552)
|+.++.....+ ..+ ...+.++.++++.+++|+.||.|++||++ ....+..+.+|...|.+++|+ +.+|++
T Consensus 162 d~~~~~~~~~~---~~~----~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 234 (401)
T 4aez_A 162 DVESQTKLRTM---AGH----QARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLAS 234 (401)
T ss_dssp ETTTCCEEEEE---CCC----SSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ECcCCeEEEEe---cCC----CCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEE
Confidence 99876433332 222 22456777788999999999999999998 567788899999999999999 349999
Q ss_pred EeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCC-CEEEEEE--CCCcEEEEeCCc--ceeeeecccceEEEEEe
Q 008820 398 GSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQ-HTLVVSH--ESGSIKVWRNDK--FMKSMQTHKGSVFAVFL 472 (552)
Q Consensus 398 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~--~dg~i~iwd~~~--~~~~~~~h~~~v~~v~~ 472 (552)
|+.|+.|++||+++++.+..+..+. ..+.+ ++|+|++ .++++|+ .|+.|++||+.+ ....+. |...+.++.|
T Consensus 235 ~~~d~~v~iwd~~~~~~~~~~~~~~-~~v~~-~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~ 311 (401)
T 4aez_A 235 GGNDNVVQIWDARSSIPKFTKTNHN-AAVKA-VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIW 311 (401)
T ss_dssp EETTSCEEEEETTCSSEEEEECCCS-SCCCE-EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEE
T ss_pred EeCCCeEEEccCCCCCccEEecCCc-ceEEE-EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEE
Confidence 9999999999999999888887653 44454 6899976 5666654 699999999653 445554 5678888887
Q ss_pred --cCCEEEEE--eCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEEeCCCeEEEEEecC
Q 008820 473 --EGKWLFTG--GWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCADRTVKIALCNR 538 (552)
Q Consensus 473 --~~~~l~sg--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~Dg~v~iw~~~~ 538 (552)
++++++++ +.||.|++||+.++.......... +...|.+++|+++ .|++++.||.|++|++..
T Consensus 312 s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~---h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 312 SPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPA---HDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp CSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEEC---CSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred CCCCCeEEEEeecCCCcEEEEecCCccceeEEEecC---CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 89999984 489999999999876554433222 2667999999953 499999999999999984
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-32 Score=274.73 Aligned_cols=274 Identities=20% Similarity=0.272 Sum_probs=215.0
Q ss_pred cceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEE-EEecCCCCEEEEEcCCCcEEEEeCCCCCCCc
Q 008820 253 DCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAV-VYVDEDQPLCISGDSGGGIFVWSFSFPLGHE 329 (552)
Q Consensus 253 ~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 329 (552)
..+++++|+ +++|++++.|+.|++||+.+++....+..| .+..+ .|++ ++.++++++.||.|++||+.++...
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~- 132 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA--DYTAVDTAKL-QMRRFILGTTEGDIKVLDSNFNLQR- 132 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC--CEEEEEEECS-SSCEEEEEETTSCEEEECTTSCEEE-
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC--CceEEEEEec-CCCEEEEEECCCCEEEEeCCCccee-
Confidence 345578888 999999999999999999887776666655 44444 5555 4558899999999999999865432
Q ss_pred cccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEE
Q 008820 330 PLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLW 407 (552)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iw 407 (552)
..+..+.. .....++++++++|++|+.|+.|++||+++++.+..+.+|...|++++|+ +.+|++++.|++|++|
T Consensus 133 --~~~~~h~~--~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw 208 (420)
T 3vl1_A 133 --EIDQAHVS--EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208 (420)
T ss_dssp --EETTSSSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred --eecccccC--ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEe
Confidence 22223322 22345788899999999999999999999999999999999999999999 3499999999999999
Q ss_pred ECCCCceeEEEecCC--CCceEEE--------------------EEEcCCCCEEEEEECCCcEEEEeCCcc--eee-eec
Q 008820 408 SLSDHSLLTVLEEDS--SGAVSSV--------------------LSLTAVQHTLVVSHESGSIKVWRNDKF--MKS-MQT 462 (552)
Q Consensus 408 d~~~~~~~~~~~~~~--~~~~~~~--------------------~~~s~~~~~l~~g~~dg~i~iwd~~~~--~~~-~~~ 462 (552)
|+++++.+..+..+. ...+..+ ++|+|+++++++|+.||.|++||++.. ... ...
T Consensus 209 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 288 (420)
T 3vl1_A 209 ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK 288 (420)
T ss_dssp ETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT
T ss_pred ECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc
Confidence 999999988887532 2222221 346789999999999999999997643 333 345
Q ss_pred ccceEEEEEe--cCC-EEEEEeCCCeEEEEecCCCee-eeeeccCCCcccCcceEEEEEeCC-eEEEEeCCCeEEEEEec
Q 008820 463 HKGSVFAVFL--EGK-WLFTGGWDKTVSVQELAGDEF-EEDVIPTGAIPCGSVITALLYWQG-KLFVGCADRTVKIALCN 537 (552)
Q Consensus 463 h~~~v~~v~~--~~~-~l~sgs~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~l~~~~~-~l~s~s~Dg~v~iw~~~ 537 (552)
|...|.++.| ++. +|++|+.||.|++||+++++. ...+... +...|.++.+.++ .|++++.||.|++|++.
T Consensus 289 ~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~ 364 (420)
T 3vl1_A 289 FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN----EGTPINNVYFAAGALFVSSGFDTSIKLDIIS 364 (420)
T ss_dssp TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES----TTSCEEEEEEETTEEEEEETTTEEEEEEEEC
T ss_pred cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc----CCCCceEEEeCCCCEEEEecCCccEEEEecc
Confidence 8889999988 666 999999999999999987643 3333221 2567899988876 48999999999999997
Q ss_pred C
Q 008820 538 R 538 (552)
Q Consensus 538 ~ 538 (552)
.
T Consensus 365 ~ 365 (420)
T 3vl1_A 365 D 365 (420)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-30 Score=275.23 Aligned_cols=322 Identities=16% Similarity=0.181 Sum_probs=244.9
Q ss_pred CCCccccceeeecCcc-eEEEeeCCCeEEEEE---------eecCcc---ceEEEEEc---CCEEEEEeCCCcEEEEeCC
Q 008820 217 SDGADIDQARAAGGVK-DLVNGLSKGNVKFKD---------LQGHRD---CVTGLAVG---GGFLFSSSFDKSIHVWSLK 280 (552)
Q Consensus 217 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------l~~H~~---~V~~l~~s---~~~l~s~s~dg~I~iwd~~ 280 (552)
.+...+..+.+.+.+. .++++..++.+.+|+ +.+|.+ .|++++|+ +++|++++.||.|++||+.
T Consensus 158 ~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 237 (615)
T 1pgu_A 158 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 237 (615)
T ss_dssp SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred cCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence 3445678888888887 788999999988887 467999 99999998 5799999999999999999
Q ss_pred CCeEEEEE-e---CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEE
Q 008820 281 DFSHVHTF-K---GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLY 356 (552)
Q Consensus 281 ~~~~~~~~-~---~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 356 (552)
+++.+..+ . .|...|.+++|+ ++.++++++.|+.|++||+.+++....+............ ...+ +++++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~l~ 313 (615)
T 1pgu_A 238 SGEFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV-GVVA-TGNGRII 313 (615)
T ss_dssp TCCEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEE-EEEE-EETTEEE
T ss_pred CCCEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCcee-EEEe-CCCCeEE
Confidence 99999999 6 899999999998 5568899999999999999876543333222111111111 1223 3888999
Q ss_pred EeeCCCcEEEEECCCCceeEEecCCCCCeEEEEE---------------------------------e-CCEEEEEeCCC
Q 008820 357 TGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAV---------------------------------C-NGVLYSGSRDG 402 (552)
Q Consensus 357 sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~---------------------------------~-~~~l~s~~~dg 402 (552)
+++.||.|++||+.+++.+..+.+|...|++++| . ++.+++++.|+
T Consensus 314 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~ 393 (615)
T 1pgu_A 314 SLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDD 393 (615)
T ss_dssp EEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTT
T ss_pred EEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCC
Confidence 9999999999999998888888877777776666 2 23555555555
Q ss_pred cEEEEECCC----------------------------------CceeEEEecCCCCceEEEEEEcCCCCEEEEEEC-CCc
Q 008820 403 TIRLWSLSD----------------------------------HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHE-SGS 447 (552)
Q Consensus 403 ~i~iwd~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~ 447 (552)
.|++||+.+ ++.+..+. +...+.. ++++ ++++++++. ||.
T Consensus 394 ~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~--~~~l~~~~~~d~~ 468 (615)
T 1pgu_A 394 TLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR--LNSPGSA-VSLS--QNYVAVGLEEGNT 468 (615)
T ss_dssp EEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEE-EEEC--SSEEEEEETTTSC
T ss_pred CEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc--cCCCceE-EEEc--CCEEEEeecCCCe
Confidence 555555432 22222222 1222333 4566 889999999 999
Q ss_pred EEEEeCCcc-e--eeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC---
Q 008820 448 IKVWRNDKF-M--KSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--- 519 (552)
Q Consensus 448 i~iwd~~~~-~--~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--- 519 (552)
|++||.... . ..+..|...|.++.+ ++++|++++.||.|++||+.+++....+... +...|++++|+|
T Consensus 469 i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----h~~~v~~~~~sp~~~ 544 (615)
T 1pgu_A 469 IQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF----RTSKINAISWKPAEK 544 (615)
T ss_dssp EEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC----CSSCEEEEEECCCC-
T ss_pred EEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecC----CCCceeEEEEcCccc
Confidence 999997642 2 567789999999987 8999999999999999999988776554321 367799999987
Q ss_pred -------C--eEEEEeCCCeEEEEEecCCcceeEEEecccc
Q 008820 520 -------G--KLFVGCADRTVKIALCNRQIPEIFSLLLHIN 551 (552)
Q Consensus 520 -------~--~l~s~s~Dg~v~iw~~~~~~~~~~~~~gh~~ 551 (552)
+ .|++|+.||.|++|+++.....+..+.+|..
T Consensus 545 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~ 585 (615)
T 1pgu_A 545 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 585 (615)
T ss_dssp -----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT
T ss_pred cccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCcc
Confidence 4 4999999999999999865567778888853
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=263.17 Aligned_cols=270 Identities=11% Similarity=0.138 Sum_probs=216.6
Q ss_pred Cccccceeeec----CcceEEEeeCCCeEEEEEee--------------cCccceEEEEEc------CCEEEEEeCCCcE
Q 008820 219 GADIDQARAAG----GVKDLVNGLSKGNVKFKDLQ--------------GHRDCVTGLAVG------GGFLFSSSFDKSI 274 (552)
Q Consensus 219 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~--------------~H~~~V~~l~~s------~~~l~s~s~dg~I 274 (552)
...+..+.+.+ ....++.+..++.+.+|++. .|...|++++|+ +++|++|+.||.|
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i 97 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGII 97 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEE
Confidence 34577777776 35556666667788888753 266789999998 2589999999999
Q ss_pred EEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCE
Q 008820 275 HVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRY 354 (552)
Q Consensus 275 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (552)
++||+.+++.+..+.+|...|.+++|+|.++.++++++.||.|++||++++.....+.....+.. .....++++++++
T Consensus 98 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~ 175 (366)
T 3k26_A 98 RIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD--EVLSADYDLLGEK 175 (366)
T ss_dssp EEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS--CEEEEEECTTSSE
T ss_pred EEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC--ceeEEEECCCCCE
Confidence 99999999999999999999999999996667899999999999999987654433322223322 2234577788999
Q ss_pred EEEeeCCCcEEEEECCCCceeEEe----------------------------cCCCCCeEEEEEeCCEEEEEeCCCcEEE
Q 008820 355 LYTGSGDRTIKAWSLLDGTLSCTM----------------------------SGHKSAVSTLAVCNGVLYSGSRDGTIRL 406 (552)
Q Consensus 355 l~sgs~dg~i~iwd~~~~~~~~~~----------------------------~~h~~~v~~l~~~~~~l~s~~~dg~i~i 406 (552)
|++++.||.|++||+++++....+ .+|...|.+++|+++++++++.|+.|++
T Consensus 176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~ 255 (366)
T 3k26_A 176 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVC 255 (366)
T ss_dssp EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEE
T ss_pred EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEE
Confidence 999999999999999987654433 3499999999999889999999999999
Q ss_pred EECCCCce--------------eEEEecCCCCceEEEEEEcCC--CCEEEEEECCCcEEEEeCCc------ceeeeecc-
Q 008820 407 WSLSDHSL--------------LTVLEEDSSGAVSSVLSLTAV--QHTLVVSHESGSIKVWRNDK------FMKSMQTH- 463 (552)
Q Consensus 407 wd~~~~~~--------------~~~~~~~~~~~~~~~~~~s~~--~~~l~~g~~dg~i~iwd~~~------~~~~~~~h- 463 (552)
||+++++. +..+..+. ..+.. ++|+|+ +++|++|+.||.|++||+.. ....+.+|
T Consensus 256 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 333 (366)
T 3k26_A 256 WKPGKMEDDIDKIKPSESNVTILGRFDYSQ-CDIWY-MRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 333 (366)
T ss_dssp EEESSTTCCGGGCCTTCCCEEEEEEEECSS-CCSSC-CCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT
T ss_pred EeCCCccccccccccCCcchheeccccccC-CcEEE-EEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc
Confidence 99988754 55565553 33444 588888 99999999999999999754 33467777
Q ss_pred -cceEEEEEe--cCCEEEEEeCCCeEEEEecC
Q 008820 464 -KGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 464 -~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~ 492 (552)
...|.++.| ++++|++++.||.|++||+.
T Consensus 334 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 334 CGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 789999987 89999999999999999985
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-31 Score=282.15 Aligned_cols=269 Identities=21% Similarity=0.364 Sum_probs=214.4
Q ss_pred CCCccccceeeecC-cceEEEeeCCCeEEEEE--------------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeC
Q 008820 217 SDGADIDQARAAGG-VKDLVNGLSKGNVKFKD--------------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSL 279 (552)
Q Consensus 217 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~ 279 (552)
.+...+..+.+.+. ...+++++.++.+++|+ +.+|...|++++|+ +++|+||+.||+|+|||+
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~ 459 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL 459 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 34455777777765 46788999999999996 45899999999999 899999999999999999
Q ss_pred CCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCC--CEEEE
Q 008820 280 KDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSG--RYLYT 357 (552)
Q Consensus 280 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~s 357 (552)
.+++....+.+|...|.+++|+|++. ++++|+.|++|++||...............+.. .....++++++ ..+++
T Consensus 460 ~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s 536 (694)
T 3dm0_A 460 AAGVSTRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECKYTISEGGEGHRD--WVSCVRFSPNTLQPTIVS 536 (694)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSTTSCSS--CEEEEEECSCSSSCEEEE
T ss_pred CCCcceeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcceeeccCCCCCCC--cEEEEEEeCCCCcceEEE
Confidence 99999999999999999999999765 679999999999999764321111111112221 22345677765 48999
Q ss_pred eeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCC
Q 008820 358 GSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAV 435 (552)
Q Consensus 358 gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~ 435 (552)
|+.|++|++||++++++...+.+|...|++++|+ +.+|++|+.||+|++||+++++.+..+..+ ..+.+ ++|+|+
T Consensus 537 ~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~--~~v~~-~~~sp~ 613 (694)
T 3dm0_A 537 ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN--SVIHA-LCFSPN 613 (694)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS--SCEEE-EEECSS
T ss_pred EeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC--CcEEE-EEEcCC
Confidence 9999999999999999999999999999999999 349999999999999999999988777643 33444 799999
Q ss_pred CCEEEEEECCCcEEEEeCCc--ceeeeecc-------------------cceEEEEEe--cCCEEEEEeCCCeEEEEecC
Q 008820 436 QHTLVVSHESGSIKVWRNDK--FMKSMQTH-------------------KGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 436 ~~~l~~g~~dg~i~iwd~~~--~~~~~~~h-------------------~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~ 492 (552)
+.++++++ ++.|++||+.. .+..+..+ ...+.++.| +|++|++|+.||.|++||+.
T Consensus 614 ~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 614 RYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp SSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 98887765 55699999764 33333221 123566766 89999999999999999985
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-30 Score=285.30 Aligned_cols=282 Identities=17% Similarity=0.265 Sum_probs=239.3
Q ss_pred EEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q 008820 245 FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (552)
Q Consensus 245 ~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 322 (552)
.+.+.+|.+.|++++|+ +++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+|++. +|++++.||.|++||+
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKN-WIIVGSDDFRIRVFNY 84 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGT-EEEEEETTSEEEEEET
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCC-EEEEEeCCCeEEEEEC
Confidence 46789999999999999 99999999999999999999999999999999999999999665 7799999999999999
Q ss_pred CCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCC-ceeEEecCCCCCeEEEEEeC---CEEEEE
Q 008820 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDG-TLSCTMSGHKSAVSTLAVCN---GVLYSG 398 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~---~~l~s~ 398 (552)
.++.....+ ..+.. .....++++++++|++|+.||.|++||++++ .....+.+|...|.+++|++ +.++++
T Consensus 85 ~~~~~~~~~---~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 159 (814)
T 3mkq_A 85 NTGEKVVDF---EAHPD--YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (814)
T ss_dssp TTCCEEEEE---ECCSS--CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred CCCcEEEEE---ecCCC--CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence 876543333 22322 2234578899999999999999999999887 77788899999999999984 389999
Q ss_pred eCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcC--CCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEe--
Q 008820 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA--VQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL-- 472 (552)
Q Consensus 399 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~-- 472 (552)
+.||+|++||+.+++....+..++...+.. ++++| ++.++++++.||.|++||.. +....+.+|...|.++.|
T Consensus 160 ~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 238 (814)
T 3mkq_A 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNY-VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238 (814)
T ss_dssp ETTSEEEEEETTCSSCSEEEECCCTTCCCE-EEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred eCCCeEEEEECCCCcceeEEecCCCCCEEE-EEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence 999999999999998888887766455555 68888 99999999999999999965 467788899999999887
Q ss_pred cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC-e--EEEEeCCCeEEEEEecC
Q 008820 473 EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG-K--LFVGCADRTVKIALCNR 538 (552)
Q Consensus 473 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~--l~s~s~Dg~v~iw~~~~ 538 (552)
++.+|++++.||.|++||+.+++........ ...+.+++|+++ . +++++.|+.+.+|++..
T Consensus 239 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-----LERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp SSSEEEEEETTSCEEEEETTTCSEEEEECCS-----SSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeecC-----CCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence 8899999999999999999987766655443 567999999964 2 56666788899999864
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-30 Score=253.92 Aligned_cols=274 Identities=17% Similarity=0.237 Sum_probs=232.0
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEE
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVH 286 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~ 286 (552)
+...+..+.+++.++.++++..++.+.+|+ +.+|.+.|++++|+ +++|++++.||+|++||+.+++.+.
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 110 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVA 110 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 344588888999999999999999999987 56799999999999 8999999999999999999999999
Q ss_pred EEeCCCCCeEEEEEecCCCCEEEEEcCC-----CcEEEEeCCCCCCCcccccc--------ccCCCceeeeEEEEeeCCC
Q 008820 287 TFKGHDHKVMAVVYVDEDQPLCISGDSG-----GGIFVWSFSFPLGHEPLKKW--------NEEKDWRYSGIHALTTSGR 353 (552)
Q Consensus 287 ~~~~h~~~v~~v~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 353 (552)
.+. |...|.+++|+|++. ++++++.+ +.|++||+........+... ..+.........+++++++
T Consensus 111 ~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (369)
T 3zwl_B 111 TWK-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK 188 (369)
T ss_dssp EEE-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC
T ss_pred Eee-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC
Confidence 988 889999999999765 67888888 99999999876543322221 1121111344567888999
Q ss_pred EEEEeeCCCcEEEEECCC-CceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEE
Q 008820 354 YLYTGSGDRTIKAWSLLD-GTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVL 430 (552)
Q Consensus 354 ~l~sgs~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 430 (552)
.+++++.||.|++||+++ ++.+..+..|...|.+++|+ +.+|++++.|+.|++||+++++.+..+... ..+.. +
T Consensus 189 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~~-~ 265 (369)
T 3zwl_B 189 YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETD--CPLNT-A 265 (369)
T ss_dssp EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS--SCEEE-E
T ss_pred EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCC--CCcee-E
Confidence 999999999999999998 78888999999999999999 349999999999999999999998888733 34444 6
Q ss_pred EEcCCCCEEEEEECCC--------------cEEEEeCC--cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecC
Q 008820 431 SLTAVQHTLVVSHESG--------------SIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 431 ~~s~~~~~l~~g~~dg--------------~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~ 492 (552)
+++|+++++++++.++ .+++||.. +....+.+|...|.++.| ++++|++++.||.|++|+++
T Consensus 266 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 266 VITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp EECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred EecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence 9999999999999988 89999954 567788899999999987 89999999999999999998
Q ss_pred CCee
Q 008820 493 GDEF 496 (552)
Q Consensus 493 ~~~~ 496 (552)
++..
T Consensus 346 ~~~~ 349 (369)
T 3zwl_B 346 KSYF 349 (369)
T ss_dssp HHHH
T ss_pred cccc
Confidence 6543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=262.46 Aligned_cols=282 Identities=17% Similarity=0.233 Sum_probs=218.2
Q ss_pred EEEeecCccceEEEEEc---CCEEEEEeCCCcEEEEeCCCCeEEEEEe-------------CCCCCeEEEEEecCCCCEE
Q 008820 245 FKDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFSHVHTFK-------------GHDHKVMAVVYVDEDQPLC 308 (552)
Q Consensus 245 ~~~l~~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~~~~~~~~~-------------~h~~~v~~v~~~~~~~~~l 308 (552)
...+.+|.+.|++++|+ +++|++|+.||.|++||+.+++....+. +|...|.+++|+|++..++
T Consensus 36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 115 (408)
T 4a11_B 36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115 (408)
T ss_dssp EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence 34577899999999997 7999999999999999999876544443 5999999999999777789
Q ss_pred EEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEee---CCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCe
Q 008820 309 ISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT---SGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAV 385 (552)
Q Consensus 309 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v 385 (552)
++++.||.|++||+.++.....+. ... . .....+.+ ++.++++|+.||.|++||+++++.+..+.+|...|
T Consensus 116 ~s~~~d~~i~iwd~~~~~~~~~~~---~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v 189 (408)
T 4a11_B 116 TSSSFDKTLKVWDTNTLQTADVFN---FEE--T-VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEI 189 (408)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEE---CSS--C-EEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCE
T ss_pred EEEeCCCeEEEeeCCCCccceecc---CCC--c-eeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcE
Confidence 999999999999998754333222 111 1 12234444 44599999999999999999999999999999999
Q ss_pred EEEEEe-C-C-EEEEEeCCCcEEEEECCCCc-eeEEEe--------------cCCCCceEEEEEEcCCCCEEEEEECCCc
Q 008820 386 STLAVC-N-G-VLYSGSRDGTIRLWSLSDHS-LLTVLE--------------EDSSGAVSSVLSLTAVQHTLVVSHESGS 447 (552)
Q Consensus 386 ~~l~~~-~-~-~l~s~~~dg~i~iwd~~~~~-~~~~~~--------------~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 447 (552)
.+++|+ + . ++++++.||.|++||++++. .+..+. ..+...+.. ++|+|++++|++++.||.
T Consensus 190 ~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~ 268 (408)
T 4a11_B 190 LAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNG-LCFTSDGLHLLTVGTDNR 268 (408)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEE-EEECTTSSEEEEEETTSC
T ss_pred EEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeE-EEEcCCCCEEEEecCCCe
Confidence 999999 3 3 69999999999999998876 444442 123344554 699999999999999999
Q ss_pred EEEEeCCcce--eeeecc------cceEEEEEe-cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEe
Q 008820 448 IKVWRNDKFM--KSMQTH------KGSVFAVFL-EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW 518 (552)
Q Consensus 448 i~iwd~~~~~--~~~~~h------~~~v~~v~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 518 (552)
|++||+.... ..+..+ ......... .+..+++++.|+.|++||+.+++....+..+ ...|.+++|+
T Consensus 269 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-----~~~v~~~~~s 343 (408)
T 4a11_B 269 MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH-----YKTVDCCVFQ 343 (408)
T ss_dssp EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC-----SSCEEEEEEE
T ss_pred EEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC-----CCeEEEEEEc
Confidence 9999976432 222111 111122222 4566777788999999999988777665532 6779999999
Q ss_pred CC--eEEEEeCCCeEEEEEecC
Q 008820 519 QG--KLFVGCADRTVKIALCNR 538 (552)
Q Consensus 519 ~~--~l~s~s~Dg~v~iw~~~~ 538 (552)
++ .|++|+.||.|++|+++.
T Consensus 344 ~~~~~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 344 SNFQELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp TTTTEEEEEETTSCEEEEEECC
T ss_pred CCCCEEEEECCCCeEEEEeCCC
Confidence 63 499999999999999984
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-32 Score=261.41 Aligned_cols=241 Identities=17% Similarity=0.228 Sum_probs=189.3
Q ss_pred EeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCe--EEEEEeCCCCCeEEEEEecC-CCCEEEEEcCCCcEEEEe
Q 008820 247 DLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS--HVHTFKGHDHKVMAVVYVDE-DQPLCISGDSGGGIFVWS 321 (552)
Q Consensus 247 ~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~-~~~~l~s~~~dg~i~vwd 321 (552)
.+.+|.++|++++|+ +++|++|+.|++|+|||+.+++ .+..+.+|.+.|.+++|+++ ++.+|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 367999999999998 9999999999999999998875 46789999999999999864 456889999999999999
Q ss_pred CCCCCCCccccccccCCCceeeeEEEEeeC--CCEEEEeeCCCcEEEEECCCCce---eEEecCCCCCeEEEEEeC----
Q 008820 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTS--GRYLYTGSGDRTIKAWSLLDGTL---SCTMSGHKSAVSTLAVCN---- 392 (552)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~sgs~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~~~---- 392 (552)
++++... ....+..+.. .....+++|+ +.+|++|+.|+.|++||++++.. ...+.+|...|.+++|++
T Consensus 88 ~~~~~~~-~~~~~~~h~~--~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 88 EENGTWE-KSHEHAGHDS--SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp CSSSCCC-EEEEECCCSS--CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred CCCCcce-EEEEccCCCC--ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 9865321 2222222322 1224577787 67999999999999999987632 345678999999999983
Q ss_pred ---------------CEEEEEeCCCcEEEEECCCC---ceeEEEecCCCCceEEEEEEcCCC----CEEEEEECCCcEEE
Q 008820 393 ---------------GVLYSGSRDGTIRLWSLSDH---SLLTVLEEDSSGAVSSVLSLTAVQ----HTLVVSHESGSIKV 450 (552)
Q Consensus 393 ---------------~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~s~~~----~~l~~g~~dg~i~i 450 (552)
.+|++|+.|++|++||++.. +.+..+..| ...+.+ ++|+|++ .+|++|+.||+|++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h-~~~V~~-v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH-SDWVRD-VAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC-SSCEEE-EECCCCSSCSCCEEEEEETTCEEEE
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC-CCceEE-EEecCCCCCCCceEEEEcCCCeEEE
Confidence 37999999999999999765 345555554 455555 6999986 89999999999999
Q ss_pred EeCCc------ceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecC
Q 008820 451 WRNDK------FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 451 wd~~~------~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~ 492 (552)
||... ....+..|...|.+++| ++++|++++.|++|++|+..
T Consensus 243 w~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 243 WTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 99654 23456778999999987 89999999999999999976
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-31 Score=260.46 Aligned_cols=280 Identities=10% Similarity=0.046 Sum_probs=207.0
Q ss_pred cceEEEEEc--CCEEEEEeCCC-------cEEEEeCCCCeE----------EEEEeCCCCCeEEEEEecCCCCEEEEE--
Q 008820 253 DCVTGLAVG--GGFLFSSSFDK-------SIHVWSLKDFSH----------VHTFKGHDHKVMAVVYVDEDQPLCISG-- 311 (552)
Q Consensus 253 ~~V~~l~~s--~~~l~s~s~dg-------~I~iwd~~~~~~----------~~~~~~h~~~v~~v~~~~~~~~~l~s~-- 311 (552)
-||.+++|+ +++|++|+.|. .|++|++..... ...+.+|...|.++++.. ..+++|
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~---~~~~~g~~ 91 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK---GIILVGCN 91 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET---TEEEEECC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC---CEEEEEEC
Confidence 589999999 88999987643 599999875421 234567888999988753 244544
Q ss_pred ---------cCCCcEEEEeCCCCCCCccc----cccccCCCceeeeEEEEeeCCCEEE--EeeCCCcEEEEECCCCceeE
Q 008820 312 ---------DSGGGIFVWSFSFPLGHEPL----KKWNEEKDWRYSGIHALTTSGRYLY--TGSGDRTIKAWSLLDGTLSC 376 (552)
Q Consensus 312 ---------~~dg~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~--sgs~dg~i~iwd~~~~~~~~ 376 (552)
+.|+.+++|++......... .............+.+|+|||++++ +++.|++|++||+++++++.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 45788999998765432111 1111111112334678999999765 45578999999999999998
Q ss_pred EecCCCCCeEEEEEe-CC-EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCC----cEEE
Q 008820 377 TMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG----SIKV 450 (552)
Q Consensus 377 ~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg----~i~i 450 (552)
.+. |...|.+++|+ ++ ++++++ ++.+++|+..+++.+..............++|+|++.++++++.|+ .+++
T Consensus 172 ~~~-~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~ 249 (365)
T 4h5i_A 172 EIE-TRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTK 249 (365)
T ss_dssp EEE-CSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEE
T ss_pred EeC-CCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEee
Confidence 886 77889999999 44 677666 5667788888887665543322233344479999999999999887 5788
Q ss_pred EeCCcc------eeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--
Q 008820 451 WRNDKF------MKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG-- 520 (552)
Q Consensus 451 wd~~~~------~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-- 520 (552)
||.... ...+.+|...|++++| +|++|++|+.|++|+|||+.+++....+... |...|++++|+|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~g----H~~~V~~v~fSpdg~ 325 (365)
T 4h5i_A 250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQA----HSFAITEVTISPDST 325 (365)
T ss_dssp EEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTS----SSSCEEEEEECTTSC
T ss_pred cccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCc----ccCCEEEEEECCCCC
Confidence 885432 3456789999999887 9999999999999999999998776654321 2678999999963
Q ss_pred eEEEEeCCCeEEEEEecCCcc
Q 008820 521 KLFVGCADRTVKIALCNRQIP 541 (552)
Q Consensus 521 ~l~s~s~Dg~v~iw~~~~~~~ 541 (552)
.|++||.|++|+||+++.+..
T Consensus 326 ~laS~S~D~tvrvw~ip~~~~ 346 (365)
T 4h5i_A 326 YVASVSAANTIHIIKLPLNYA 346 (365)
T ss_dssp EEEEEETTSEEEEEECCTTTT
T ss_pred EEEEEeCCCeEEEEEcCCCCc
Confidence 499999999999999975443
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-30 Score=249.47 Aligned_cols=271 Identities=20% Similarity=0.351 Sum_probs=219.2
Q ss_pred CCCCccccceeeecC-cceEEEeeCCCeEEEEEe--------------ecCccceEEEEEc--CCEEEEEeCCCcEEEEe
Q 008820 216 NSDGADIDQARAAGG-VKDLVNGLSKGNVKFKDL--------------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWS 278 (552)
Q Consensus 216 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l--------------~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd 278 (552)
..+...+.++.+++. ++.+++++.|+.+++|++ .+|.+.|++++|+ +++|++|+.|+.|++|+
T Consensus 35 ~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~ 114 (340)
T 4aow_A 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD 114 (340)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence 445566889999886 578899999999999973 5799999999999 89999999999999999
Q ss_pred CCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCC--CEEE
Q 008820 279 LKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSG--RYLY 356 (552)
Q Consensus 279 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~ 356 (552)
............+...+....+++.+. ++++++.|+.+++||+...... ......+.. .....++++++ ..++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~--~~~~~~~~~--~v~~~~~~~~~~~~~~~ 189 (340)
T 4aow_A 115 LTTGTTTRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKY--TVQDESHSE--WVSCVRFSPNSSNPIIV 189 (340)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEE--EECSSSCSS--CEEEEEECSCSSSCEEE
T ss_pred ecccceeeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceE--EEEeccccC--cccceEEccCCCCcEEE
Confidence 999999999999999999999988655 6799999999999998753221 111122221 12234555554 4889
Q ss_pred EeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcC
Q 008820 357 TGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA 434 (552)
Q Consensus 357 sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~ 434 (552)
+++.|+.|++||+++++.+..+.+|...|++++|+ +.+|++|+.|++|++||+++.+.+..+..+ ..+.. ++++|
T Consensus 190 s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~~v~~-~~~~~ 266 (340)
T 4aow_A 190 SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG--DIINA-LCFSP 266 (340)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS--SCEEE-EEECS
T ss_pred EEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC--ceEEe-eecCC
Confidence 99999999999999999999999999999999999 349999999999999999999999888765 33444 68999
Q ss_pred CCCEEEEEECCCcEEEEeCCcc--ee---------eeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCe
Q 008820 435 VQHTLVVSHESGSIKVWRNDKF--MK---------SMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDE 495 (552)
Q Consensus 435 ~~~~l~~g~~dg~i~iwd~~~~--~~---------~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~ 495 (552)
++.++ +++.|+.|++||.... .. ...+|...|++++| ++++|++|+.||.|++||++++.
T Consensus 267 ~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 267 NRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 87655 5667999999997532 22 23468899999987 89999999999999999998764
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-30 Score=256.41 Aligned_cols=272 Identities=15% Similarity=0.107 Sum_probs=221.2
Q ss_pred CccccceeeecCcceEEEeeCCCeEEEEE-----------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEE
Q 008820 219 GADIDQARAAGGVKDLVNGLSKGNVKFKD-----------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHV 285 (552)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~ 285 (552)
...+..+.++++++.++++..++.+.+|+ +.+|...|++++|+ +++|++++.||.|++||+.+++..
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 87 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 87 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeee
Confidence 34577888888888888888888887776 45799999999999 899999999999999999988765
Q ss_pred EEE--eCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCc
Q 008820 286 HTF--KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT 363 (552)
Q Consensus 286 ~~~--~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~ 363 (552)
..+ ..|...|.+++|+|++ .++++++.|+.|++||++..............+. ......+++++++++++|+.||.
T Consensus 88 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~ 165 (372)
T 1k8k_C 88 PTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR-STVLSLDWHPNSVLLAAGSCDFK 165 (372)
T ss_dssp EEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC-SCEEEEEECTTSSEEEEEETTSC
T ss_pred eeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeeeecccC-CCeeEEEEcCCCCEEEEEcCCCC
Confidence 544 6799999999999965 5889999999999999987653222222222211 12234577888999999999999
Q ss_pred EEEEEC------------------CCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCC
Q 008820 364 IKAWSL------------------LDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423 (552)
Q Consensus 364 i~iwd~------------------~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 423 (552)
|++||+ ..++.+..+.+|...|.+++|+ +.+|++++.|+.|++||+++++.+..+..+.
T Consensus 166 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~- 244 (372)
T 1k8k_C 166 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET- 244 (372)
T ss_dssp EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS-
T ss_pred EEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC-
Confidence 999995 4678888999999999999998 3499999999999999999999999988763
Q ss_pred CceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ce----------------------------------------eee-
Q 008820 424 GAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FM----------------------------------------KSM- 460 (552)
Q Consensus 424 ~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~----------------------------------------~~~- 460 (552)
..+.. ++|+|++.++++| .|+.|++||... .. ..+
T Consensus 245 ~~v~~-~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (372)
T 1k8k_C 245 LPLLA-VTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD 322 (372)
T ss_dssp CCEEE-EEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred CCeEE-EEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccc
Confidence 34454 6999999988887 999999999654 10 223
Q ss_pred ecccceEEEEEe---cC---CEEEEEeCCCeEEEEecCCCe
Q 008820 461 QTHKGSVFAVFL---EG---KWLFTGGWDKTVSVQELAGDE 495 (552)
Q Consensus 461 ~~h~~~v~~v~~---~~---~~l~sgs~dg~i~iwd~~~~~ 495 (552)
.+|...|.++.+ +| .+|++|+.||.|++||+.+.+
T Consensus 323 ~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 323 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 489999999974 56 899999999999999997643
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-30 Score=285.97 Aligned_cols=193 Identities=12% Similarity=0.040 Sum_probs=158.4
Q ss_pred ccccceeeecCcceEEEeeCCCeEEEEEe--------ecCccceEEEEEc-CCEEEEEeCCCcEEEEeCCCCeEEEEEeC
Q 008820 220 ADIDQARAAGGVKDLVNGLSKGNVKFKDL--------QGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKG 290 (552)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------~~H~~~V~~l~~s-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 290 (552)
..+.++++++.+..++++..++.+++|+. ..|..+|++++|+ +++|++++.|++|++||+.+++++..+.
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~- 96 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVF- 96 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEE-
T ss_pred CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEc-
Confidence 34888999999999999999999999963 3578899999999 8899999999999999999999999887
Q ss_pred CCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCc-cc-------cccccCCCceeeeEEEEeeC-CCEEEEeeCC
Q 008820 291 HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHE-PL-------KKWNEEKDWRYSGIHALTTS-GRYLYTGSGD 361 (552)
Q Consensus 291 h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~-~~~l~sgs~d 361 (552)
|.+.|++++|+|++. ++++|+.||+|++||+++..... .+ .....+. ......+|+|+ +..+++|+.|
T Consensus 97 ~~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~--~~V~sl~~sp~~~~~l~~g~~d 173 (902)
T 2oaj_A 97 VPGKITSIDTDASLD-WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL--SPIVSIQWNPRDIGTVLISYEY 173 (902)
T ss_dssp CSSCEEEEECCTTCS-EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC--CCCCEEEEETTEEEEEEEECSS
T ss_pred CCCCEEEEEECCCCC-EEEEEcCCCcEEEEECCCCccccceeccccccccccccCC--CCeEEEEEccCCCCEEEEEeCC
Confidence 778999999999665 78999999999999998654310 00 1111111 11223467774 4689999999
Q ss_pred CcEEEEECCCCceeEEecCC------------------CCCeEEEEEe-C-CEEEEEeCCCcEEEEECCCCceeEE
Q 008820 362 RTIKAWSLLDGTLSCTMSGH------------------KSAVSTLAVC-N-GVLYSGSRDGTIRLWSLSDHSLLTV 417 (552)
Q Consensus 362 g~i~iwd~~~~~~~~~~~~h------------------~~~v~~l~~~-~-~~l~s~~~dg~i~iwd~~~~~~~~~ 417 (552)
|.| +||+++++++..+..| ...|++++|+ + .+|++++.||+|++||+++++++..
T Consensus 174 g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~ 248 (902)
T 2oaj_A 174 VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMA 248 (902)
T ss_dssp CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEE
T ss_pred CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE
Confidence 999 9999999999888766 5779999999 3 4999999999999999999887653
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-30 Score=248.46 Aligned_cols=268 Identities=17% Similarity=0.219 Sum_probs=207.6
Q ss_pred eEEEEEc-CCEEEEEeCCCcEEEEeCCCCeEEEEEe--CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccc
Q 008820 255 VTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFK--GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPL 331 (552)
Q Consensus 255 V~~l~~s-~~~l~s~s~dg~I~iwd~~~~~~~~~~~--~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 331 (552)
.++|+|+ +++|++| .|++|+|||+.++++++.+. +|...|++++|+|++. ++++|+.||+|++||+++++...
T Consensus 28 ~~~l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~-~l~sgs~Dg~v~iw~~~~~~~~~-- 103 (318)
T 4ggc_A 28 LNLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLR-- 103 (318)
T ss_dssp CBCEEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEE--
T ss_pred ceEEEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCC-EEEEEECCCcEEEeecCCceeEE--
Confidence 5678999 7777665 59999999999999988775 5778899999999665 78999999999999998765433
Q ss_pred cccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCC-ceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEE
Q 008820 332 KKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDG-TLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWS 408 (552)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd 408 (552)
....+. ..+.++++++..+++|+.++.+++|+.... ..+..+.+|...+.++.+. +.++++++.|++|++||
T Consensus 104 -~~~~h~----~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd 178 (318)
T 4ggc_A 104 -NMTSHS----ARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 178 (318)
T ss_dssp -EEECCS----SCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred -EecCcc----ceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEE
Confidence 333332 245678888999999999999999998865 4567788999999999998 45999999999999999
Q ss_pred CCCCcee----EEEecCCCCceEEEEEEcCCCC-EE--EEEECCCcEEEEeCCcc-eeeeecccceEEEEEe--cCCEEE
Q 008820 409 LSDHSLL----TVLEEDSSGAVSSVLSLTAVQH-TL--VVSHESGSIKVWRNDKF-MKSMQTHKGSVFAVFL--EGKWLF 478 (552)
Q Consensus 409 ~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~-~l--~~g~~dg~i~iwd~~~~-~~~~~~h~~~v~~v~~--~~~~l~ 478 (552)
+++++.. .... .+.+.+.. +.+++++. .+ ++++.++.|++||.... ......+...+..+.+ ++..++
T Consensus 179 ~~~~~~~~~~~~~~~-~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 256 (318)
T 4ggc_A 179 SAPGEGGWVPLQTFT-QHQGAVKA-VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELI 256 (318)
T ss_dssp SSCBTTBSCCSEEEC-CCCSCEEE-EEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEE
T ss_pred CCCCcccccceeeec-ccCCceEE-EEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceE
Confidence 9886532 2222 22344554 46666654 33 35667899999996643 3334456666766665 777776
Q ss_pred EEe--CCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEEeCCCeEEEEEecC
Q 008820 479 TGG--WDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCADRTVKIALCNR 538 (552)
Q Consensus 479 sgs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~Dg~v~iw~~~~ 538 (552)
+++ .|+.|++||+.+++....+.. |...|++++|+|+ .|++|+.||+|+|||+..
T Consensus 257 ~~sg~~d~~i~iwd~~~~~~~~~l~g-----H~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 257 SGHGFAQNQLVIWKYPTMAKVAELKG-----HTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEECTTTCCEEEEETTTCCEEEEECC-----CSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEcC-----CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 654 799999999999887776654 2678999999963 599999999999999864
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-30 Score=250.50 Aligned_cols=277 Identities=17% Similarity=0.240 Sum_probs=223.3
Q ss_pred CccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCC
Q 008820 251 HRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328 (552)
Q Consensus 251 H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 328 (552)
|.++|.+++|+ |++++++..++.+.+|+...........+|...|.+++|+|++. ++++++ ||.|++||+.++...
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~-dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNK 85 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCc-EEEEcC-CCeEEEEECCCCCce
Confidence 56789999999 89999888888887777666555555568999999999999665 677887 999999999987655
Q ss_pred ccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCc--eeEEecCCCCCeEEEEEe--CCEEEEEeCCCcE
Q 008820 329 EPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT--LSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTI 404 (552)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i 404 (552)
..+...............+++++++++++++.||.|++||+++++ ....+..|...|.+++|+ ++++++++.||.|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 555444321122233445788899999999999999999999887 666788899999999999 3499999999999
Q ss_pred EEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcc--eeeeecccceEEEEEe--cCCEEEEE
Q 008820 405 RLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF--MKSMQTHKGSVFAVFL--EGKWLFTG 480 (552)
Q Consensus 405 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~h~~~v~~v~~--~~~~l~sg 480 (552)
++||+++++.+..+..+ ...+.. ++++|+++++++++.||.|++||+++. ... ..|...+.++.+ ++++|+++
T Consensus 166 ~~~d~~~~~~~~~~~~~-~~~i~~-~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~ 242 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQGH-TDGASC-IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDFTSQIFSLGYCPTGEWLAVG 242 (337)
T ss_dssp EEEETTTTEEEEEECCC-SSCEEE-EEECTTSSEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEECTTSSEEEEE
T ss_pred EEEeCCCCceeeeeecc-cCceEE-EEECCCCCEEEEEecCCcEEEEECCCCceEee-ecCCCceEEEEECCCCCEEEEE
Confidence 99999999988888765 344444 699999999999999999999997643 333 346778888876 89999999
Q ss_pred eCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEEeCCCeEEEEEecC
Q 008820 481 GWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGCADRTVKIALCNR 538 (552)
Q Consensus 481 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~Dg~v~iw~~~~ 538 (552)
+.|+.|++||+.+.+...... +...|.+++|++ ..|++++.||.|++|+++.
T Consensus 243 ~~~~~i~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 243 MESSNVEVLHVNKPDKYQLHL------HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp ETTSCEEEEETTSSCEEEECC------CSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred cCCCcEEEEECCCCCeEEEcC------CccceeEEEECCCCCEEEEecCCCcEEEEECCC
Confidence 999999999999876543221 266799999995 3599999999999999984
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-30 Score=264.63 Aligned_cols=282 Identities=13% Similarity=0.176 Sum_probs=213.0
Q ss_pred cCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCe-----------EEEEEeCCC------------CCeEEEEEecCC
Q 008820 250 GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS-----------HVHTFKGHD------------HKVMAVVYVDED 304 (552)
Q Consensus 250 ~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~-----------~~~~~~~h~------------~~v~~v~~~~~~ 304 (552)
.|.+.|++++|+ +++|++|+.||.|+|||+.+++ ....+.+|. +.|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 367899999999 8999999999999999999877 588899998 889999999986
Q ss_pred C-CEEEEEcCCCcEEEEeCCCCCCCcc------------------------------------cccc-ccCCCceeeeEE
Q 008820 305 Q-PLCISGDSGGGIFVWSFSFPLGHEP------------------------------------LKKW-NEEKDWRYSGIH 346 (552)
Q Consensus 305 ~-~~l~s~~~dg~i~vwd~~~~~~~~~------------------------------------~~~~-~~~~~~~~~~~~ 346 (552)
+ ..+++++.|++|++||+........ ...+ ..+. ......
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~ 183 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT--YHINSI 183 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS--SCCCEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC--cceEEE
Confidence 4 5889999999999999875322100 0011 1111 112345
Q ss_pred EEeeCCCEEEEeeCCCcEEEEECCC-CceeE-------EecCCCCCeEEEEEe--C-CEEEEEeCCCcEEEEECCCCce-
Q 008820 347 ALTTSGRYLYTGSGDRTIKAWSLLD-GTLSC-------TMSGHKSAVSTLAVC--N-GVLYSGSRDGTIRLWSLSDHSL- 414 (552)
Q Consensus 347 ~~~~~~~~l~sgs~dg~i~iwd~~~-~~~~~-------~~~~h~~~v~~l~~~--~-~~l~s~~~dg~i~iwd~~~~~~- 414 (552)
++++++++|++| .|+.|++||+++ ++... .+.+|...|++++|+ + .+|++|+.||+|++||+++++.
T Consensus 184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 788899999998 799999999984 44444 256899999999999 3 5999999999999999999886
Q ss_pred ---eEEEecCCC-----------CceEEEEEEcCCCCEEEEEECCCcEEEEeCC---cceeeeecccceE----------
Q 008820 415 ---LTVLEEDSS-----------GAVSSVLSLTAVQHTLVVSHESGSIKVWRND---KFMKSMQTHKGSV---------- 467 (552)
Q Consensus 415 ---~~~~~~~~~-----------~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~---~~~~~~~~h~~~v---------- 467 (552)
+..+..+.. ..+.+ ++|+|++++|++++. +.|++||++ +++..+.+|...+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISD-VKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEE-EEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTS
T ss_pred cceeeEeccCCCccccccccccCceEEE-EEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccc
Confidence 677776542 14554 799999999999999 999999964 4677788886422
Q ss_pred -------EEEEecCCEEEEEeCCCeEEEEecCCCeeeeeeccCC---------------------------CcccCcceE
Q 008820 468 -------FAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTG---------------------------AIPCGSVIT 513 (552)
Q Consensus 468 -------~~v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~---------------------------~~~~~~~v~ 513 (552)
.++++++++|++|+.||.|++||+.+++......... .......|.
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL 420 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence 3445599999999999999999999876543221110 112345688
Q ss_pred EEEEeCC--eEEEEeCCCeEEEEEec
Q 008820 514 ALLYWQG--KLFVGCADRTVKIALCN 537 (552)
Q Consensus 514 ~l~~~~~--~l~s~s~Dg~v~iw~~~ 537 (552)
.++|+|+ .|++++.+ .+++|.-+
T Consensus 421 ~~~~~p~~~~la~~~~~-~~~~~~~~ 445 (447)
T 3dw8_B 421 HTAWHPKENIIAVATTN-NLYIFQDK 445 (447)
T ss_dssp EEEECSSSSEEEEECSS-CEEEEECC
T ss_pred EEEECCCCCEEEEEecc-eeeeeccc
Confidence 9999964 46666666 48888744
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-29 Score=257.09 Aligned_cols=268 Identities=17% Similarity=0.265 Sum_probs=210.3
Q ss_pred ceEEEEEc-CCEEEEEeCCCcEEEEeCCCCeEEEEEe--CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcc
Q 008820 254 CVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFK--GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP 330 (552)
Q Consensus 254 ~V~~l~~s-~~~l~s~s~dg~I~iwd~~~~~~~~~~~--~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 330 (552)
.++.|+|+ ++.|++|. |++|+|||..+++....+. +|...|++|+|+|++. +|++|+.||+|++||+.+++..
T Consensus 107 y~~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~-~lasgs~Dg~v~iWd~~~~~~~-- 182 (420)
T 4gga_A 107 YLNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRL-- 182 (420)
T ss_dssp TCBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEE--
T ss_pred cceeEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCC-EEEEEECCCeEEEEEcCCCcEE--
Confidence 46779999 77777765 9999999999999888775 5778899999999665 7899999999999999876433
Q ss_pred ccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCC-ceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEE
Q 008820 331 LKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDG-TLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLW 407 (552)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iw 407 (552)
..+..+. ..+.++++++..+++|+.|+.+++||.... ..+..+.+|...+..+.++ +.++++++.|+.+++|
T Consensus 183 -~~~~~h~----~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~ 257 (420)
T 4gga_A 183 -RNMTSHS----ARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257 (420)
T ss_dssp -EEECCCS----SCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred -EEEeCCC----CceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEE
Confidence 3333332 346678899999999999999999998864 5567889999999999999 4599999999999999
Q ss_pred ECCCCce----eEEEecCCCCceEEEEEEcCCC-CEEEEE--ECCCcEEEEeCCc--ceeeeecccceEEEEEe--cCCE
Q 008820 408 SLSDHSL----LTVLEEDSSGAVSSVLSLTAVQ-HTLVVS--HESGSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKW 476 (552)
Q Consensus 408 d~~~~~~----~~~~~~~~~~~~~~~~~~s~~~-~~l~~g--~~dg~i~iwd~~~--~~~~~~~h~~~v~~v~~--~~~~ 476 (552)
|..+++. +.....+ ...+.. ++|+|++ ..++++ +.|++|++||+.+ ....+..|. .+.++.+ +++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~-~~~V~~-~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~-~v~~~~~~~~~~~ 334 (420)
T 4gga_A 258 PSAPGEGGWVPLQTFTQH-QGAVKA-VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKE 334 (420)
T ss_dssp ESSCCSSCSCCSEEECCC-SSCEEE-EEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS-CEEEEEEETTTTE
T ss_pred eeccccccceeeeeeccc-CCceee-eeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc-ceeeeeecCCCCe
Confidence 9987653 3344333 445555 5777765 555554 4799999999654 455555554 4555554 7888
Q ss_pred EEEEe--CCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEEeCCCeEEEEEecC
Q 008820 477 LFTGG--WDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCADRTVKIALCNR 538 (552)
Q Consensus 477 l~sgs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~Dg~v~iw~~~~ 538 (552)
+++++ .|+.|++||+.+++....+..+ ...|++++|+|+ .|+||+.||+|+|||+..
T Consensus 335 lv~~sg~~d~~I~iwd~~~~~~v~~l~gH-----~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTMAKVAELKGH-----TSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEECCC-----SSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEEEecCCCEEEEEECCCCcEEEEEcCC-----CCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 87765 7899999999998877666542 678999999963 599999999999999863
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-30 Score=296.06 Aligned_cols=324 Identities=19% Similarity=0.240 Sum_probs=259.3
Q ss_pred CCCccccceeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc----CCEEEEEeCCCcEEEEeCCCCe
Q 008820 217 SDGADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG----GGFLFSSSFDKSIHVWSLKDFS 283 (552)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s----~~~l~s~s~dg~I~iwd~~~~~ 283 (552)
.+...+..+.++++++.++++..++.+.+|+ +.+|.+.|++++|+ +.++++|+.|++|++||+.+++
T Consensus 655 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~ 734 (1249)
T 3sfz_A 655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 734 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS
T ss_pred cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc
Confidence 3455688899999999999999999999997 46899999999997 4589999999999999999999
Q ss_pred EEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccc----------------------c-------
Q 008820 284 HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKK----------------------W------- 334 (552)
Q Consensus 284 ~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----------------------~------- 334 (552)
++.++.+|.+.|.+++|+|++. ++++++.||+|++||+.++.....+.. +
T Consensus 735 ~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 813 (1249)
T 3sfz_A 735 CRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKI 813 (1249)
T ss_dssp EEEEECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEE
T ss_pred hhheecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEE
Confidence 9999999999999999999665 889999999999999876532211100 0
Q ss_pred ----------------------ccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-
Q 008820 335 ----------------------NEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC- 391 (552)
Q Consensus 335 ----------------------~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~- 391 (552)
...+. ......+++++++.+++++.||.|++||+.++..+..+.+|...|++++|+
T Consensus 814 ~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp 892 (1249)
T 3sfz_A 814 IVAAKNKVLLFDIHTSGLLAEIHTGHH-STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP 892 (1249)
T ss_dssp EEEETTEEEEEETTTCCEEEEEECSSS-SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EEEcCCcEEEEEecCCCceeEEcCCCC-CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECC
Confidence 00000 112245788899999999999999999999999999999999999999999
Q ss_pred -CCEEEEEeCCCcEEEEECCC-----------------------------------------------------------
Q 008820 392 -NGVLYSGSRDGTIRLWSLSD----------------------------------------------------------- 411 (552)
Q Consensus 392 -~~~l~s~~~dg~i~iwd~~~----------------------------------------------------------- 411 (552)
+..+++++.||+|++||+.+
T Consensus 893 dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 972 (1249)
T 3sfz_A 893 DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPH 972 (1249)
T ss_dssp TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTT
T ss_pred CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCC
Confidence 34899999999999998542
Q ss_pred --------------------CceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc-ceeeeecccceEEEE
Q 008820 412 --------------------HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK-FMKSMQTHKGSVFAV 470 (552)
Q Consensus 412 --------------------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~h~~~v~~v 470 (552)
++....+..+ ...+.+ ++|+|+++++++++.||.|++||..+ ....+..|...+.++
T Consensus 973 g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h-~~~v~~-l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~ 1050 (1249)
T 3sfz_A 973 LEYVAFGDEDGAIKIIELPNNRVFSSGVGH-KKAVRH-IQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDF 1050 (1249)
T ss_dssp SSEEEEEETTSCCEEEETTTTSCEEECCCC-SSCCCC-EEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEE
T ss_pred CCEEEEEcCCCCEEEEEcCCCceeeecccC-CCceEE-EEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEE
Confidence 1111122222 233444 68999999999999999999999764 233556899999999
Q ss_pred Ee-cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEEeCCCeEEEEEecCCcceeEEEe
Q 008820 471 FL-EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCADRTVKIALCNRQIPEIFSLL 547 (552)
Q Consensus 471 ~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~Dg~v~iw~~~~~~~~~~~~~ 547 (552)
.+ .+..+++++.||.|++||+.+++....+..+ ...|.+++|+++ .+++++.||.|++|++. +...+..+.
T Consensus 1051 ~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-----~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~-~~~~~~~l~ 1124 (1249)
T 3sfz_A 1051 RLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCH-----QGTVLSCAISSDATKFSSTSADKTAKIWSFD-LLSPLHELK 1124 (1249)
T ss_dssp EECSSSEEEEEESSSEEEEEETTTTCCCEEEECC-----SSCCCCEEECSSSSSCEEECCSSCCCEECSS-SSSCSBCCC
T ss_pred EEcCCCcEEEEECCCcEEEEECCCCceeEEEccc-----CCcEEEEEECCCCCEEEEEcCCCcEEEEECC-Ccceeeeec
Confidence 88 5678899999999999999988776665432 567899999964 49999999999999997 445566666
Q ss_pred ccc
Q 008820 548 LHI 550 (552)
Q Consensus 548 gh~ 550 (552)
+|.
T Consensus 1125 ~h~ 1127 (1249)
T 3sfz_A 1125 GHN 1127 (1249)
T ss_dssp CCS
T ss_pred cCC
Confidence 665
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-30 Score=252.35 Aligned_cols=275 Identities=16% Similarity=0.138 Sum_probs=220.5
Q ss_pred eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCe---EEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q 008820 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS---HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (552)
Q Consensus 248 l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~---~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 322 (552)
..+|.+.|++++|+ +++|++++.|+.|++||+.+++ ....+.+|...|.+++|+|++..++++++.||.|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 46899999999999 8999999999999999998876 345566899999999999974427899999999999999
Q ss_pred -CCCCCCcccccccc--CCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCC---------CceeEEecCCCCCeEEEEE
Q 008820 323 -SFPLGHEPLKKWNE--EKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLD---------GTLSCTMSGHKSAVSTLAV 390 (552)
Q Consensus 323 -~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~---------~~~~~~~~~h~~~v~~l~~ 390 (552)
..... ..+.. +.. . ....++++ ++.+++++.|+.|++||+++ ++++..+. |...|.+++|
T Consensus 87 ~~~~~~----~~~~~~~~~~-~-v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~ 158 (342)
T 1yfq_A 87 IGSPSF----QALTNNEANL-G-ICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDT 158 (342)
T ss_dssp SSSSSE----EECBSCCCCS-C-EEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEE
T ss_pred ccCCce----EeccccCCCC-c-eEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEe
Confidence 76532 22222 222 1 22346677 88999999999999999987 77777776 8899999999
Q ss_pred eCCEEEEEeCCCcEEEEECCC-Cce-eEEEecCCCCceEEEEEEcC-CCCEEEEEECCCcEEEEeCC--------cceee
Q 008820 391 CNGVLYSGSRDGTIRLWSLSD-HSL-LTVLEEDSSGAVSSVLSLTA-VQHTLVVSHESGSIKVWRND--------KFMKS 459 (552)
Q Consensus 391 ~~~~l~s~~~dg~i~iwd~~~-~~~-~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iwd~~--------~~~~~ 459 (552)
+++.+++++.|+.|++||+++ +.. .......+...+.+ ++++| +++++++++.||.|++|+.. +....
T Consensus 159 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~-i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRD-VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEE-EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred cCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeE-EEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence 977799999999999999998 654 33333344445554 69999 99999999999999999853 55667
Q ss_pred eecccc---------eEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEe-CCeEEEEeC
Q 008820 460 MQTHKG---------SVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QGKLFVGCA 527 (552)
Q Consensus 460 ~~~h~~---------~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~ 527 (552)
+..|.. .|.++.+ ++++|++++.||.|++||+.+++....+..+ +...|.+++ . +..|++|+.
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----h~~~v~~~~-~~~~~l~s~s~ 312 (342)
T 1yfq_A 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF----NEDSVVKIA-CSDNILCLATS 312 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC----SSSEEEEEE-ECSSEEEEEEE
T ss_pred eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc----cCCCceEec-CCCCeEEEEec
Confidence 777765 8999887 8999999999999999999988776654432 156788888 5 456999999
Q ss_pred CCe-EEEEEe
Q 008820 528 DRT-VKIALC 536 (552)
Q Consensus 528 Dg~-v~iw~~ 536 (552)
||. .+.|..
T Consensus 313 Dg~~~~~~~~ 322 (342)
T 1yfq_A 313 DDTFKTNAAI 322 (342)
T ss_dssp CTHHHHCSSS
T ss_pred CCcccccccc
Confidence 999 666664
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.2e-30 Score=253.97 Aligned_cols=281 Identities=12% Similarity=0.116 Sum_probs=221.3
Q ss_pred EEEEeecCccceEEEEEc-C----CEEEEEeCCCcEEEEeCCC-CeEE-EEEeCCCCCeEEEEEecCCCCEEEEEcCCCc
Q 008820 244 KFKDLQGHRDCVTGLAVG-G----GFLFSSSFDKSIHVWSLKD-FSHV-HTFKGHDHKVMAVVYVDEDQPLCISGDSGGG 316 (552)
Q Consensus 244 ~~~~l~~H~~~V~~l~~s-~----~~l~s~s~dg~I~iwd~~~-~~~~-~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~ 316 (552)
.+..+.+|.+.|++++|+ . ++|++|+.||.|++||+.+ +..+ ..+.+|...|.+++|+|++. +|++++.||.
T Consensus 31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~ 109 (368)
T 3mmy_A 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS-KVFTASCDKT 109 (368)
T ss_dssp CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSS-EEEEEETTSE
T ss_pred eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCC-EEEEEcCCCc
Confidence 456789999999999999 3 7999999999999999987 5554 78889999999999999554 7899999999
Q ss_pred EEEEeCCCCCCCccccccccCCCceeeeEEEE--eeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCE
Q 008820 317 IFVWSFSFPLGHEPLKKWNEEKDWRYSGIHAL--TTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGV 394 (552)
Q Consensus 317 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 394 (552)
|++||+++..... ...+.. .. ...++ ++++++|++++.||.|++||+++++.+..+..+. .+.++.+....
T Consensus 110 v~iwd~~~~~~~~----~~~~~~-~v-~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~ 182 (368)
T 3mmy_A 110 AKMWDLSSNQAIQ----IAQHDA-PV-KTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIYPM 182 (368)
T ss_dssp EEEEETTTTEEEE----EEECSS-CE-EEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEETTE
T ss_pred EEEEEcCCCCcee----eccccC-ce-EEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecCCe
Confidence 9999998764322 122222 12 22345 6778899999999999999999999999988665 67888888889
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCE----EEEEECCCcEEEEeCCc-----ceeeeecccc
Q 008820 395 LYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHT----LVVSHESGSIKVWRNDK-----FMKSMQTHKG 465 (552)
Q Consensus 395 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~----l~~g~~dg~i~iwd~~~-----~~~~~~~h~~ 465 (552)
+++++.|+.+++||++..................++.+.++... +++++.||.|++||... ....+.+|..
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 262 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS 262 (368)
T ss_dssp EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE
T ss_pred eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec
Confidence 99999999999999988765444333222233333555555443 99999999999999763 4567777776
Q ss_pred ------------eEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEEeCCC
Q 008820 466 ------------SVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCADR 529 (552)
Q Consensus 466 ------------~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~Dg 529 (552)
.|.++.+ ++++|++++.||.|++||+.+++....+.. +...|.+++|+++ .|++|+.|+
T Consensus 263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ-----LDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC-----CSSCEEEEEECTTSSCEEEEECCC
T ss_pred ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC-----CCCCceEEEECCCCCeEEEEeccc
Confidence 6988887 889999999999999999998877665543 2667999999963 499999998
Q ss_pred eEEEEEec
Q 008820 530 TVKIALCN 537 (552)
Q Consensus 530 ~v~iw~~~ 537 (552)
..+.|++.
T Consensus 338 ~~~~~~~~ 345 (368)
T 3mmy_A 338 WSKGHEFY 345 (368)
T ss_dssp STTCGGGC
T ss_pred cccccccc
Confidence 76666654
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-29 Score=269.00 Aligned_cols=300 Identities=16% Similarity=0.152 Sum_probs=241.5
Q ss_pred ccccceeeecCcceEEEeeCCCeEEEEE-------------eecCccc-eEEEEEc----CCEEEEEeCCCcEEEEeCCC
Q 008820 220 ADIDQARAAGGVKDLVNGLSKGNVKFKD-------------LQGHRDC-VTGLAVG----GGFLFSSSFDKSIHVWSLKD 281 (552)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------l~~H~~~-V~~l~~s----~~~l~s~s~dg~I~iwd~~~ 281 (552)
..+..+.++++++.++++. ++.+.+|+ +.+|.+. |++++|+ +++|++|+.||+|++||+.+
T Consensus 19 ~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~ 97 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF 97 (615)
T ss_dssp TCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred CceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCC
Confidence 4466777788777777766 56666665 4568999 9999997 58999999999999999975
Q ss_pred C--------eEEEEEeCCCCCeEEEEEecCCCCEEEEEcCC----CcEEEEeCCCCCCCccccccccCCCceeeeEEEEe
Q 008820 282 F--------SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSG----GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALT 349 (552)
Q Consensus 282 ~--------~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (552)
+ +....+..|...|.+++|+|++. ++++++.+ +.|++||.. . ....+..+.. .....+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~v~~~d~~--~---~~~~~~~~~~--~v~~~~~~ 169 (615)
T 1pgu_A 98 DKESNSVEVNVKSEFQVLAGPISDISWDFEGR-RLCVVGEGRDNFGVFISWDSG--N---SLGEVSGHSQ--RINACHLK 169 (615)
T ss_dssp EGGGTEEEEEEEEEEECCSSCEEEEEECTTSS-EEEEEECCSSCSEEEEETTTC--C---EEEECCSCSS--CEEEEEEC
T ss_pred CcccccccccccchhhcccccEEEEEEeCCCC-EEEEeccCCCCccEEEEEECC--C---cceeeecCCc--cEEEEEEC
Confidence 4 77788899999999999999766 66777766 688888832 2 2333333332 22345788
Q ss_pred eCCC-EEEEeeCCCcEEEEECCCCceeEEecCCCC---CeEEEEEe-C-C-EEEEEeCCCcEEEEECCCCceeEEEec--
Q 008820 350 TSGR-YLYTGSGDRTIKAWSLLDGTLSCTMSGHKS---AVSTLAVC-N-G-VLYSGSRDGTIRLWSLSDHSLLTVLEE-- 420 (552)
Q Consensus 350 ~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~---~v~~l~~~-~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~-- 420 (552)
++++ .+++++.|+.|++||+.+++.+..+.+|.. .|++++|+ + + ++++++.|+.|++||+++++.+..+..
T Consensus 170 ~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 249 (615)
T 1pgu_A 170 QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ 249 (615)
T ss_dssp SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTT
T ss_pred CCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccc
Confidence 8887 899999999999999999999999999999 99999999 4 4 899999999999999999999988833
Q ss_pred -CCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecc----cceEEEEEe-cCCEEEEEeCCCeEEEEecC
Q 008820 421 -DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTH----KGSVFAVFL-EGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 421 -~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h----~~~v~~v~~-~~~~l~sgs~dg~i~iwd~~ 492 (552)
.+...+.. +.|+ +++++++++.||.|++||.. +....+..+ ...+.++.+ ++.++++++.||.|++||+.
T Consensus 250 ~~~~~~v~~-~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 250 EPVQGGIFA-LSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELG 327 (615)
T ss_dssp BCCCSCEEE-EEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred cccCCceEE-EEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECC
Confidence 44555655 6888 99999999999999999975 455566655 456777766 99999999999999999999
Q ss_pred CCeeeeeeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEec
Q 008820 493 GDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCN 537 (552)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~ 537 (552)
+++....+.. +...|.+++| ++ +++++.||.|++|++.
T Consensus 328 ~~~~~~~~~~-----~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 328 HDEVLKTISG-----HNKGITALTV-NP-LISGSYDGRIMEWSSS 365 (615)
T ss_dssp EEEEEEEECC-----CSSCEEEEET-TT-TEEEETTSCEEETTTT
T ss_pred CCcEEEEEeC-----CCCCEEEEEe-cC-cEEECCCCeEEEEEch
Confidence 8766555443 2667889999 88 8889999999999875
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.9e-31 Score=267.10 Aligned_cols=279 Identities=15% Similarity=0.204 Sum_probs=223.8
Q ss_pred ccceEEEEEc--CC-EEEEE----------eCCCcEEEEeCCCCe---EEEEEeCCCCCeEEEEEecCCCCEEEEEcCCC
Q 008820 252 RDCVTGLAVG--GG-FLFSS----------SFDKSIHVWSLKDFS---HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGG 315 (552)
Q Consensus 252 ~~~V~~l~~s--~~-~l~s~----------s~dg~I~iwd~~~~~---~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg 315 (552)
...|.+++|+ ++ ++++| +.|+.|++||+.++. .+..+ .|...|.+++|+|++. +|++++.||
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~dg 89 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNK-IIAGALDNG 89 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSS-CEEEEESSS
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCC-eEEEEccCC
Confidence 3578899998 55 99999 899999999998875 33333 5889999999999765 679999999
Q ss_pred cEEEEeCCCCCCC-ccccccccCCCceeeeEEEEeeC-CCEEEEeeCCCcEEEEECCCCc------eeEE---ecCCCCC
Q 008820 316 GIFVWSFSFPLGH-EPLKKWNEEKDWRYSGIHALTTS-GRYLYTGSGDRTIKAWSLLDGT------LSCT---MSGHKSA 384 (552)
Q Consensus 316 ~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~l~sgs~dg~i~iwd~~~~~------~~~~---~~~h~~~ 384 (552)
.|++||+...... .....+..+.. .....+++++ +++|++++.||.|++||+++++ .... +..|...
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSS--SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSS--CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred eEEEeecccccccccchhhccCCcc--ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence 9999999873222 23333333332 2234577887 7899999999999999999876 3333 3679999
Q ss_pred eEEEEEe-C--CEEEEEeCCCcEEEEECCCCceeEEEecCC-----CCceEEEEEEcCCC-CEEEEEECCC---cEEEEe
Q 008820 385 VSTLAVC-N--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDS-----SGAVSSVLSLTAVQ-HTLVVSHESG---SIKVWR 452 (552)
Q Consensus 385 v~~l~~~-~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~-~~l~~g~~dg---~i~iwd 452 (552)
|.+++|+ + .++++++.|+.|++||+++++.+..+..+. ...+.+ ++|+|++ .++++++.|+ .|++||
T Consensus 168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~d~~~~~i~~~d 246 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV-VEWHPKNSTRVATATGSDNDPSILIWD 246 (416)
T ss_dssp CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEE-EEECSSCTTEEEEEECCSSSCCCCEEE
T ss_pred eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEE-EEECCCCCCEEEEEECCCCCceEEEEe
Confidence 9999999 3 389999999999999999999988887653 344554 6999997 6899999998 999999
Q ss_pred CCc---ceeeee-cccceEEEEEe---cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC---CeE
Q 008820 453 NDK---FMKSMQ-THKGSVFAVFL---EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ---GKL 522 (552)
Q Consensus 453 ~~~---~~~~~~-~h~~~v~~v~~---~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l 522 (552)
++. +...+. +|...|.++.| ++++|++++.||.|++||+.+++....+..+ ...|.+++|++ ..|
T Consensus 247 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~~l 321 (416)
T 2pm9_A 247 LRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR-----GNWCFKTKFAPEAPDLF 321 (416)
T ss_dssp TTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS-----SSCCCCEEECTTCTTEE
T ss_pred CCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC-----CCceEEEEECCCCCCEE
Confidence 753 566777 89999999987 7899999999999999999988776655432 56789999995 359
Q ss_pred EEEeCCCeEEEEEecCCc
Q 008820 523 FVGCADRTVKIALCNRQI 540 (552)
Q Consensus 523 ~s~s~Dg~v~iw~~~~~~ 540 (552)
++++.||.|++|++....
T Consensus 322 ~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 322 ACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp EECCSSSEEEEEESCCCC
T ss_pred EEEecCCcEEEEEccCCC
Confidence 999999999999997433
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.6e-30 Score=253.49 Aligned_cols=274 Identities=16% Similarity=0.262 Sum_probs=214.3
Q ss_pred CccccceeeecCcceEE-EeeC---CCeEEEEEee----------cCccceEEEEEc-C----CEEEEEeCCCcEEEEeC
Q 008820 219 GADIDQARAAGGVKDLV-NGLS---KGNVKFKDLQ----------GHRDCVTGLAVG-G----GFLFSSSFDKSIHVWSL 279 (552)
Q Consensus 219 ~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~l~----------~H~~~V~~l~~s-~----~~l~s~s~dg~I~iwd~ 279 (552)
...+..+.+++.+..++ ++.. ++.+.+|++. +|.++|++++|+ . ++|++|+.||.|++||+
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 97 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL 97 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence 34577888888776554 4444 7888888743 688999999998 3 89999999999999999
Q ss_pred CCCe-EEEEEeCCCCCeEEEEEec-----CCCCEEEEEcCCCcEEEEeCCCCC-CCccccccccCCCceeeeEE---EEe
Q 008820 280 KDFS-HVHTFKGHDHKVMAVVYVD-----EDQPLCISGDSGGGIFVWSFSFPL-GHEPLKKWNEEKDWRYSGIH---ALT 349 (552)
Q Consensus 280 ~~~~-~~~~~~~h~~~v~~v~~~~-----~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~ 349 (552)
.+++ .+..+.+|...|.++.|.+ .++.++++++.||.|++||+.++. ....+.....+.......+. +++
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (357)
T 3i2n_A 98 EAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYN 177 (357)
T ss_dssp TSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC
T ss_pred CCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccC
Confidence 9988 8899999999999997653 245588999999999999998765 23333222222121222221 156
Q ss_pred eCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeC-----CEEEEEeCCCcEEEEECCCCceeEEEe-----
Q 008820 350 TSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCN-----GVLYSGSRDGTIRLWSLSDHSLLTVLE----- 419 (552)
Q Consensus 350 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~~~dg~i~iwd~~~~~~~~~~~----- 419 (552)
++++++++++.||.|++||+++++.... ..|...|.+++|++ +.+++++.||.|++||+++++....+.
T Consensus 178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 256 (357)
T 3i2n_A 178 QEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEK 256 (357)
T ss_dssp -CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEE
T ss_pred CCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccC
Confidence 8899999999999999999999887554 55889999999984 499999999999999998876554443
Q ss_pred cCCCCceEEEEEEcCCCC-EEEEEECCCcEEEEeCC---------------------cceeeeecccceEEEEEe--cCC
Q 008820 420 EDSSGAVSSVLSLTAVQH-TLVVSHESGSIKVWRND---------------------KFMKSMQTHKGSVFAVFL--EGK 475 (552)
Q Consensus 420 ~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iwd~~---------------------~~~~~~~~h~~~v~~v~~--~~~ 475 (552)
.+ ...+.. +.|+|+++ ++++|+.||.|++||+. +.+..+.+|...|.++.| +++
T Consensus 257 ~~-~~~v~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 334 (357)
T 3i2n_A 257 AH-KSTVWQ-VRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR 334 (357)
T ss_dssp CC-SSCEEE-EEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST
T ss_pred CC-cCCEEE-EEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCC
Confidence 33 455555 69999998 89999999999999965 246678889999999987 788
Q ss_pred EEE-EEeCCCeEEEEecCCCe
Q 008820 476 WLF-TGGWDKTVSVQELAGDE 495 (552)
Q Consensus 476 ~l~-sgs~dg~i~iwd~~~~~ 495 (552)
+|+ +++.||.|++||+.+.+
T Consensus 335 ~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 335 GLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp TEEEEEETTSEEEEEEECC--
T ss_pred eEEEEecCCCcEEEEECCCcc
Confidence 887 89999999999998653
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.98 E-value=9.6e-30 Score=255.32 Aligned_cols=273 Identities=17% Similarity=0.198 Sum_probs=220.8
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEEe---------------ecCccceEEEEEc-C--------CEEEEEeCCCc
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKDL---------------QGHRDCVTGLAVG-G--------GFLFSSSFDKS 273 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------------~~H~~~V~~l~~s-~--------~~l~s~s~dg~ 273 (552)
+...+..+.+.+ ..++++..++.+.+|++ .+|..+|++++|+ . ++|++++.||.
T Consensus 15 h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~ 92 (397)
T 1sq9_A 15 HDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGD 92 (397)
T ss_dssp SSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSC
T ss_pred hhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCC
Confidence 344577777766 78889999999988874 4688999999998 4 79999999999
Q ss_pred EEEEeCCCCeE-----EEEEeCC-----CCCeEEEEEe----cCCCCEEEEEcCCCcEEEEeCCC------CCCCcccc-
Q 008820 274 IHVWSLKDFSH-----VHTFKGH-----DHKVMAVVYV----DEDQPLCISGDSGGGIFVWSFSF------PLGHEPLK- 332 (552)
Q Consensus 274 I~iwd~~~~~~-----~~~~~~h-----~~~v~~v~~~----~~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~~- 332 (552)
|++||+.+++. ...+..| ...|.+++|+ |++...+++++.||.|++||+.. ........
T Consensus 93 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 172 (397)
T 1sq9_A 93 LLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPT 172 (397)
T ss_dssp EEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCE
T ss_pred EEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCc
Confidence 99999998887 8889888 5999999999 86664389999999999999987 43332000
Q ss_pred -cccc-----CCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecC---C---CCCeEEEEEe--CCEEEEE
Q 008820 333 -KWNE-----EKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSG---H---KSAVSTLAVC--NGVLYSG 398 (552)
Q Consensus 333 -~~~~-----~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~---h---~~~v~~l~~~--~~~l~s~ 398 (552)
.+.. ..........++++++ .+++|+.||.|++||+++++.+..+.. | ...|.+++|+ +.+|+++
T Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~ 251 (397)
T 1sq9_A 173 LELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 251 (397)
T ss_dssp EEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEE
T ss_pred ceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEE
Confidence 1111 1111223345788889 999999999999999999999999998 9 9999999999 4499999
Q ss_pred eCC---CcEEEEECCCCceeEEEecC------------CCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeee
Q 008820 399 SRD---GTIRLWSLSDHSLLTVLEED------------SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQ 461 (552)
Q Consensus 399 ~~d---g~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~ 461 (552)
+.| +.|++||+++++.+..+... +...+.. ++|+|++++|++++.||.|++||+. +.+..+.
T Consensus 252 ~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 252 HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS-LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp EEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEE-EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEE-EEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 999 99999999999999888761 2445555 6999999999999999999999965 4667777
Q ss_pred ------cc---------------cceEEEEEe--cC----------CEEEEEeCCCeEEEEecCCC
Q 008820 462 ------TH---------------KGSVFAVFL--EG----------KWLFTGGWDKTVSVQELAGD 494 (552)
Q Consensus 462 ------~h---------------~~~v~~v~~--~~----------~~l~sgs~dg~i~iwd~~~~ 494 (552)
+| ...|.++.| ++ ++|++++.||.|++||+.++
T Consensus 331 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 331 MHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 77 899999987 66 69999999999999999875
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.98 E-value=6.3e-29 Score=251.52 Aligned_cols=263 Identities=17% Similarity=0.326 Sum_probs=212.2
Q ss_pred cccceeeecCcceEEEeeCCCeEEEEE-----------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEE
Q 008820 221 DIDQARAAGGVKDLVNGLSKGNVKFKD-----------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHT 287 (552)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~ 287 (552)
.++.+..+.. +.++.+. ++.+++|+ +.+|.+.|++++|+ |++|++|+.||+|+|||+.+++.+..
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 3455555543 3455544 67777776 35788999999999 89999999999999999999999999
Q ss_pred EeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEE
Q 008820 288 FKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAW 367 (552)
Q Consensus 288 ~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iw 367 (552)
+.+|...+.++++. +.++++|+.|+.+++||...... .+..+..+.. ......+.++++++++++.|+.+++|
T Consensus 185 ~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~--~~~~~~~h~~--~~~~~~~~~~g~~l~s~~~D~~v~i~ 257 (420)
T 4gga_A 185 MTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEH--HVATLSGHSQ--EVCGLRWAPDGRHLASGGNDNLVNVW 257 (420)
T ss_dssp ECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSC--EEEEEECCSS--CEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccce--eeEEeccccc--ceeeeeecCCCCeeeeeeccccceEE
Confidence 99999999999885 35899999999999999875432 2233333332 22345778899999999999999999
Q ss_pred ECCCCc----eeEEecCCCCCeEEEEEe---CCEEEE--EeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCE
Q 008820 368 SLLDGT----LSCTMSGHKSAVSTLAVC---NGVLYS--GSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHT 438 (552)
Q Consensus 368 d~~~~~----~~~~~~~h~~~v~~l~~~---~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 438 (552)
|..+++ .+.....|...|.+++|+ .+.+++ |+.|++|++||++++++...+..+. .+.. +.++++++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~--~v~~-~~~~~~~~~ 334 (420)
T 4gga_A 258 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCS-ILWSPHYKE 334 (420)
T ss_dssp ESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS--CEEE-EEEETTTTE
T ss_pred eeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc--ceee-eeecCCCCe
Confidence 998765 356678899999999998 236655 4579999999999999998887653 3444 688999998
Q ss_pred EEEEE--CCCcEEEEeCC--cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCe
Q 008820 439 LVVSH--ESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDE 495 (552)
Q Consensus 439 l~~g~--~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~ 495 (552)
+++++ .|+.|++||.. +++..+.+|.+.|.+++| +|++|+||+.|++|++||+.+..
T Consensus 335 lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred EEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 88876 68999999964 578889999999999987 89999999999999999997643
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=243.99 Aligned_cols=247 Identities=13% Similarity=0.145 Sum_probs=188.3
Q ss_pred EEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEee--CCCEEEEeeCCCc
Q 008820 286 HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT--SGRYLYTGSGDRT 363 (552)
Q Consensus 286 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~sgs~dg~ 363 (552)
..+.+|.+.|.+++|+|++. +|++|+.|++|++||+.... ...+..+..|... .. ..+|++ ++++|++|+.|++
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~-~~~~~~l~gH~~~-V~-~v~~s~~~~g~~l~s~s~D~~ 78 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGET-HKLIDTLTGHEGP-VW-RVDWAHPKFGTILASCSYDGK 78 (297)
T ss_dssp EECCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSC-BCCCEEECCCSSC-EE-EEEECCGGGCSEEEEEETTTE
T ss_pred eeccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCC-cEEEEEEccccCC-eE-EEEecCCCcCCEEEEEcCCCE
Confidence 35678999999999999765 78999999999999997432 1233444444432 11 234544 3789999999999
Q ss_pred EEEEECCCCc--eeEEecCCCCCeEEEEEeC----CEEEEEeCCCcEEEEECCCCce--eEEEecCCCCceEEEEEEcCC
Q 008820 364 IKAWSLLDGT--LSCTMSGHKSAVSTLAVCN----GVLYSGSRDGTIRLWSLSDHSL--LTVLEEDSSGAVSSVLSLTAV 435 (552)
Q Consensus 364 i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~----~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~s~~ 435 (552)
|++||+++++ .+..+.+|...|.+++|++ .+|++++.|++|++||++++.. ...+..+ ...+.+ ++|+|+
T Consensus 79 v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h-~~~v~~-~~~~p~ 156 (297)
T 2pm7_B 79 VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAH-AIGVNS-ASWAPA 156 (297)
T ss_dssp EEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECC-SSCEEE-EEECCC
T ss_pred EEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecc-cCccce-EeecCC
Confidence 9999998874 5667888999999999983 3899999999999999987642 3444444 444555 688886
Q ss_pred -------------CCEEEEEECCCcEEEEeCCc------ceeeeecccceEEEEEe--c---CCEEEEEeCCCeEEEEec
Q 008820 436 -------------QHTLVVSHESGSIKVWRNDK------FMKSMQTHKGSVFAVFL--E---GKWLFTGGWDKTVSVQEL 491 (552)
Q Consensus 436 -------------~~~l~~g~~dg~i~iwd~~~------~~~~~~~h~~~v~~v~~--~---~~~l~sgs~dg~i~iwd~ 491 (552)
+++|++|+.|++|++||.+. ....+.+|...|.++.| + +.+|++++.|++|++||+
T Consensus 157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 57999999999999999643 45678899999999998 4 479999999999999999
Q ss_pred CCCee--eeeeccCCCcccCcceEEEEEeC--CeEEEEeCCCeEEEEEecCCc
Q 008820 492 AGDEF--EEDVIPTGAIPCGSVITALLYWQ--GKLFVGCADRTVKIALCNRQI 540 (552)
Q Consensus 492 ~~~~~--~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~Dg~v~iw~~~~~~ 540 (552)
++... ...... ...+...|.+++|++ ..|++++.||.|++|+.+..+
T Consensus 237 ~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g 287 (297)
T 2pm7_B 237 DNEQGPWKKTLLK--EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (297)
T ss_dssp SSTTSCCEEEESS--SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred CCCCCccceeeee--cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCC
Confidence 86421 111111 112356799999995 359999999999999987543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=252.50 Aligned_cols=259 Identities=17% Similarity=0.293 Sum_probs=211.4
Q ss_pred cceEEEeeCCCeEEEEEee----------cCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEE
Q 008820 231 VKDLVNGLSKGNVKFKDLQ----------GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAV 298 (552)
Q Consensus 231 ~~~~~~~~~~~~~~~~~l~----------~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v 298 (552)
...++++..++.+.+|++. .|.+.|++++|+ +++|++|+.||.|++||+.+++.+..+.+|...|.++
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 182 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCL 182 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEE
Confidence 3557777788888888742 388999999999 8999999999999999999999999999999999999
Q ss_pred EEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008820 299 VYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM 378 (552)
Q Consensus 299 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~ 378 (552)
+|.+ .++++++.||.|++||++.... ....+..+.. .....++++++++|++|+.||.|++||+++++++..+
T Consensus 183 ~~~~---~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 255 (401)
T 4aez_A 183 SWNR---HVLSSGSRSGAIHHHDVRIANH--QIGTLQGHSS--EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK 255 (401)
T ss_dssp EEET---TEEEEEETTSEEEEEETTSSSC--EEEEEECCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEE
T ss_pred EECC---CEEEEEcCCCCEEEEecccCcc--eeeEEcCCCC--CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEe
Confidence 9943 4899999999999999985332 2223333322 2234577888999999999999999999999999999
Q ss_pred cCCCCCeEEEEEeC---CEEEEEe--CCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEE--CCCcEEEE
Q 008820 379 SGHKSAVSTLAVCN---GVLYSGS--RDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH--ESGSIKVW 451 (552)
Q Consensus 379 ~~h~~~v~~l~~~~---~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~--~dg~i~iw 451 (552)
..|...|.+++|++ .++++++ .|+.|++||+++++.+..+..+ ..+.. ++|+|+++.+++++ .||.|++|
T Consensus 256 ~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~--~~v~~-~~~s~~~~~l~~~~g~~dg~i~v~ 332 (401)
T 4aez_A 256 TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG--SQVTS-LIWSPHSKEIMSTHGFPDNNLSIW 332 (401)
T ss_dssp CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS--SCEEE-EEECSSSSEEEEEECTTTCEEEEE
T ss_pred cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC--CcEEE-EEECCCCCeEEEEeecCCCcEEEE
Confidence 99999999999993 3777765 7999999999999999888643 34444 79999999999954 89999999
Q ss_pred eCCc--ce--eeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeee
Q 008820 452 RNDK--FM--KSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEED 499 (552)
Q Consensus 452 d~~~--~~--~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~ 499 (552)
|... .. ..+.+|...|.++.+ ++.+|++++.||.|++||+.+++....
T Consensus 333 ~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 333 SYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp EEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred ecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence 9654 33 346789999998887 899999999999999999998766544
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=259.79 Aligned_cols=265 Identities=12% Similarity=0.069 Sum_probs=200.1
Q ss_pred cccceeeecCcceEEEeeCCCeEEEEEe-----------ecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCe---E
Q 008820 221 DIDQARAAGGVKDLVNGLSKGNVKFKDL-----------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS---H 284 (552)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~---~ 284 (552)
.+..+.++++++.++++..++.+.+|++ .+|.+.|++++|+ +++|++++.|++|++||+.+++ .
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ 92 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCC
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee
Confidence 4777888888888888888888888764 4799999999999 8999999999999999999877 6
Q ss_pred EEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcE
Q 008820 285 VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTI 364 (552)
Q Consensus 285 ~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i 364 (552)
...+.+|...|.+++|+|++. ++++++.|+.|++||++..........+...+. ......++++++++|++|+.|+.|
T Consensus 93 ~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~d~~i 170 (377)
T 3dwl_C 93 TLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLR-STILSLDWHPNNVLLAAGCADRKA 170 (377)
T ss_dssp EEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCC-SCEEEEEECTTSSEEEEEESSSCE
T ss_pred eeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccC-CCeEEEEEcCCCCEEEEEeCCCEE
Confidence 777889999999999999655 678999999999999987764333444443122 122345788889999999999999
Q ss_pred EEEECC------------------CCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCce----eEEEec
Q 008820 365 KAWSLL------------------DGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSL----LTVLEE 420 (552)
Q Consensus 365 ~iwd~~------------------~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~ 420 (552)
++||++ .++++..+ +|...|++++|+ +.+|++++.|++|++||+++++. +..+..
T Consensus 171 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 249 (377)
T 3dwl_C 171 YVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKL 249 (377)
T ss_dssp EEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEEC
T ss_pred EEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecC
Confidence 999985 34566666 899999999999 34899999999999999999887 666666
Q ss_pred CCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc-c---e----------------------------------eee--
Q 008820 421 DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK-F---M----------------------------------KSM-- 460 (552)
Q Consensus 421 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~-~---~----------------------------------~~~-- 460 (552)
+ ...+.+ ++|+|++++|++|+.++.+ +|+... . . ..+
T Consensus 250 ~-~~~v~~-~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (377)
T 3dwl_C 250 S-QLPLRS-LLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRN 326 (377)
T ss_dssp S-SSCEEE-EEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------------
T ss_pred C-CCceEE-EEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccc
Confidence 5 344554 6999999999988766655 665320 0 0 001
Q ss_pred --------------ecccceEEEEEe---cCC---EEEEEeCCCeEEEEec
Q 008820 461 --------------QTHKGSVFAVFL---EGK---WLFTGGWDKTVSVQEL 491 (552)
Q Consensus 461 --------------~~h~~~v~~v~~---~~~---~l~sgs~dg~i~iwd~ 491 (552)
..|.+.|.++.+ ++. .|+|||.||.|++||+
T Consensus 327 ~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 327 MDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ----------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred hhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 129999999985 333 7999999999999985
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-30 Score=253.48 Aligned_cols=246 Identities=17% Similarity=0.230 Sum_probs=192.6
Q ss_pred EEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCC--CCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 008820 245 FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK--DFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (552)
Q Consensus 245 ~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~--~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vw 320 (552)
+..+.+|.++|++++|+ +++|++|+.||.|++||+. +++.+..+.+|...|.+++|+++.
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---------------- 67 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK---------------- 67 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG----------------
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC----------------
Confidence 45678999999999999 8999999999999999998 667788899999999999997641
Q ss_pred eCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCc--eeEEecCCCCCeEEEEEe-C--C-E
Q 008820 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT--LSCTMSGHKSAVSTLAVC-N--G-V 394 (552)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~-~--~-~ 394 (552)
++++|++|+.||.|++||+.+++ .+..+..|...|.+++|+ + + +
T Consensus 68 ------------------------------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 117 (379)
T 3jrp_A 68 ------------------------------FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL 117 (379)
T ss_dssp ------------------------------GCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSE
T ss_pred ------------------------------CCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCE
Confidence 12345555555666666655554 566777899999999999 3 3 8
Q ss_pred EEEEeCCCcEEEEECCCCce--eEEEecCCCCceEEEEEEcC-------------CCCEEEEEECCCcEEEEeCCc----
Q 008820 395 LYSGSRDGTIRLWSLSDHSL--LTVLEEDSSGAVSSVLSLTA-------------VQHTLVVSHESGSIKVWRNDK---- 455 (552)
Q Consensus 395 l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~s~-------------~~~~l~~g~~dg~i~iwd~~~---- 455 (552)
+++++.|+.|++||++++.. ...+..+ ...+.+ ++|+| ++.++++|+.||.|++||++.
T Consensus 118 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~~v~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 195 (379)
T 3jrp_A 118 LLVASSDGKVSVVEFKENGTTSPIIIDAH-AIGVNS-ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT 195 (379)
T ss_dssp EEEEETTSEEEEEECCTTSCCCEEEEECC-TTCEEE-EEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE
T ss_pred EEEecCCCcEEEEecCCCCceeeEEecCC-CCceEE-EEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc
Confidence 99999999999999998743 3333333 444555 68998 699999999999999999642
Q ss_pred --ceeeeecccceEEEEEe--c---CCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEEe
Q 008820 456 --FMKSMQTHKGSVFAVFL--E---GKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGC 526 (552)
Q Consensus 456 --~~~~~~~h~~~v~~v~~--~---~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s 526 (552)
....+.+|...|.++.| + +.+|++++.||.|++||+.++.............+...|.+++|+++ .|++++
T Consensus 196 ~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 275 (379)
T 3jrp_A 196 YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 275 (379)
T ss_dssp EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEec
Confidence 34577889999999987 5 88999999999999999987642211111112224677999999953 499999
Q ss_pred CCCeEEEEEecC
Q 008820 527 ADRTVKIALCNR 538 (552)
Q Consensus 527 ~Dg~v~iw~~~~ 538 (552)
.||.|++|+++.
T Consensus 276 ~dg~i~iw~~~~ 287 (379)
T 3jrp_A 276 GDNKVTLWKENL 287 (379)
T ss_dssp SSSSEEEEEEEE
T ss_pred CCCcEEEEeCCC
Confidence 999999999983
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=246.76 Aligned_cols=246 Identities=17% Similarity=0.220 Sum_probs=199.2
Q ss_pred eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCC----eEEEEEeCCCCCeEEEEEecC-CCCEEEEEcCCCcEEEE
Q 008820 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF----SHVHTFKGHDHKVMAVVYVDE-DQPLCISGDSGGGIFVW 320 (552)
Q Consensus 248 l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~----~~~~~~~~h~~~v~~v~~~~~-~~~~l~s~~~dg~i~vw 320 (552)
+.+|.+.|++++|+ +++|++|+.||+|++||+.++ +....+.+|...|.+++|+|. ++.+|++++.||.|++|
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 67999999999999 899999999999999999876 577888999999999999985 36689999999999999
Q ss_pred eCCCCCCC------ccccccccCCCceeeeEEEEeeC--CCEEEEeeCCCcEEEEECCCCceeEEec-------------
Q 008820 321 SFSFPLGH------EPLKKWNEEKDWRYSGIHALTTS--GRYLYTGSGDRTIKAWSLLDGTLSCTMS------------- 379 (552)
Q Consensus 321 d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~~l~sgs~dg~i~iwd~~~~~~~~~~~------------- 379 (552)
|++.+... ..+..+..+.. .....+++++ ++++++++.||.|++||+++++.+..+.
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLNDSKG--SLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEECCCSS--CEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred ecCCCcccccccCcceeeeecccCC--ceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 99876432 12233333322 1223467787 8899999999999999998876554332
Q ss_pred CCCCCeEEEEEe-----CCEEEEEeCCCcEEEEECCCCce--eEEEecCCCCceEEEEEEcCCC----CEEEEEECCCcE
Q 008820 380 GHKSAVSTLAVC-----NGVLYSGSRDGTIRLWSLSDHSL--LTVLEEDSSGAVSSVLSLTAVQ----HTLVVSHESGSI 448 (552)
Q Consensus 380 ~h~~~v~~l~~~-----~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~s~~~----~~l~~g~~dg~i 448 (552)
.|...+.+++|+ +..+++++.|+.+.+|+...++. +..+..+ ...+.+ ++|+|++ ++|++|+.||.|
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~-~~~~p~~~~~~~~l~s~~~dg~i 242 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH-KSLIRS-ISWAPSIGRWYQLIATGCKDGRI 242 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC-CSCEEE-EEECCCSSCSSEEEEEEETTSCE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC-CcceeE-EEECCCCCCcceEEEEEcCCCeE
Confidence 688899999998 34999999999998888887775 4444443 445555 6999998 899999999999
Q ss_pred EEEeCCc------------------------------------------------ceeeeecccceEEEEEe--cCCEEE
Q 008820 449 KVWRNDK------------------------------------------------FMKSMQTHKGSVFAVFL--EGKWLF 478 (552)
Q Consensus 449 ~iwd~~~------------------------------------------------~~~~~~~h~~~v~~v~~--~~~~l~ 478 (552)
++||++. .+..+.+|...|.++.| ++++|+
T Consensus 243 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 322 (351)
T 3f3f_A 243 RIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILS 322 (351)
T ss_dssp EEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEE
T ss_pred EEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEE
Confidence 9999543 44566789999999988 799999
Q ss_pred EEeCCCeEEEEecCCCeee
Q 008820 479 TGGWDKTVSVQELAGDEFE 497 (552)
Q Consensus 479 sgs~dg~i~iwd~~~~~~~ 497 (552)
+++.||.|++||+.+++..
T Consensus 323 s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 323 SAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp EEETTSCEEEEEECTTSCE
T ss_pred EecCCCcEEEEecCcCcch
Confidence 9999999999999876443
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-30 Score=257.58 Aligned_cols=279 Identities=13% Similarity=0.194 Sum_probs=213.1
Q ss_pred EEEEcCC---EEEEEeCCCcEEEEeCCCCe----EEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCC-
Q 008820 257 GLAVGGG---FLFSSSFDKSIHVWSLKDFS----HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH- 328 (552)
Q Consensus 257 ~l~~s~~---~l~s~s~dg~I~iwd~~~~~----~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~- 328 (552)
.++++.+ ++++++.||.|+||++.+.. .+..+.+|.+.|.+++|+|.++.+|++|+.||+|++||+.++...
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~ 118 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL 118 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc
Confidence 4677733 34457889999999996542 345577899999999999966679999999999999999876432
Q ss_pred ---ccccccccCCCceeeeEEEEeeCC-CEEEEeeCCCcEEEEECCCCceeEEe--cCCCCCeEEEEEe--CCEEEEEeC
Q 008820 329 ---EPLKKWNEEKDWRYSGIHALTTSG-RYLYTGSGDRTIKAWSLLDGTLSCTM--SGHKSAVSTLAVC--NGVLYSGSR 400 (552)
Q Consensus 329 ---~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~~--~~~l~s~~~ 400 (552)
..+..+..+.. .....++++++ ++|++|+.||.|++||+++++.+..+ .+|...|.+++|+ +.+|++++.
T Consensus 119 ~~~~~~~~~~~h~~--~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 196 (402)
T 2aq5_A 119 PLREPVITLEGHTK--RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196 (402)
T ss_dssp CBCSCSEEEECCSS--CEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred ccCCceEEecCCCC--eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence 22333333332 22345778887 69999999999999999999999999 8899999999999 349999999
Q ss_pred CCcEEEEECCCCceeEEEecCCCCc-eEEEEEEcCCCCEEEEE---ECCCcEEEEeCCcc---eeeee-cccceEEEEEe
Q 008820 401 DGTIRLWSLSDHSLLTVLEEDSSGA-VSSVLSLTAVQHTLVVS---HESGSIKVWRNDKF---MKSMQ-THKGSVFAVFL 472 (552)
Q Consensus 401 dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~l~~g---~~dg~i~iwd~~~~---~~~~~-~h~~~v~~v~~ 472 (552)
|+.|++||+++++.+..+...+.+. +.. +.|+|+++++++| +.|+.|++||.+.. ..... .|...+.++.+
T Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 275 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVVAEKDRPHEGTRPVH-AVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF 275 (402)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCSSSCCE-EEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEE
T ss_pred CCcEEEEeCCCCceeeeeccCCCCCcceE-EEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEE
Confidence 9999999999999998884333343 444 6899999999999 78999999997642 22333 46677877776
Q ss_pred --cCCEEE-EEeCCCeEEEEecCCCee-eeeeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEecCCcc
Q 008820 473 --EGKWLF-TGGWDKTVSVQELAGDEF-EEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCNRQIP 541 (552)
Q Consensus 473 --~~~~l~-sgs~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~~~~~ 541 (552)
++++|+ +|+.||.|++||+.+++. ...+.... +...|.+++|+|+..+.++.|+.+++|++.....
T Consensus 276 s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~---~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 276 DPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS---SKESQRGMGYMPKRGLEVNKCEIARFYKLHERKC 345 (402)
T ss_dssp ETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC---CSSCCSEEEECCGGGSCGGGTEEEEEEEEETTEE
T ss_pred cCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc---cCCcccceEEecccccceecceeEEEEEcCCCcE
Confidence 788886 555799999999998763 22222211 2577999999986634445788999999985433
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-29 Score=249.34 Aligned_cols=307 Identities=18% Similarity=0.162 Sum_probs=215.6
Q ss_pred CCccccceeeec-CcceEEEeeCCCeEEEEEee----------------------cCccceEEEEEc---CCEEEEEeCC
Q 008820 218 DGADIDQARAAG-GVKDLVNGLSKGNVKFKDLQ----------------------GHRDCVTGLAVG---GGFLFSSSFD 271 (552)
Q Consensus 218 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~----------------------~H~~~V~~l~~s---~~~l~s~s~d 271 (552)
+...+..+.+++ .+..++++..++.+.+|++. +|...|++++|+ +.+|++++.|
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 345588889999 89999999999999999964 499999999998 6799999999
Q ss_pred CcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCC--CEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEe
Q 008820 272 KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ--PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALT 349 (552)
Q Consensus 272 g~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (552)
|.|++||+.+++....+. +...+.++.|++.+. .++++++.|+.|++||++++.....+. .+.. .....+++
T Consensus 122 ~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~---~~~~--~v~~~~~~ 195 (408)
T 4a11_B 122 KTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ---GHRQ--EILAVSWS 195 (408)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC---CCCS--CEEEEEEC
T ss_pred CeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec---CCCC--cEEEEEEC
Confidence 999999999999988887 788899999998643 488999999999999998765443332 2222 12344678
Q ss_pred eCCC-EEEEeeCCCcEEEEECCCCc-eeEEe---------------cCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECC
Q 008820 350 TSGR-YLYTGSGDRTIKAWSLLDGT-LSCTM---------------SGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLS 410 (552)
Q Consensus 350 ~~~~-~l~sgs~dg~i~iwd~~~~~-~~~~~---------------~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~ 410 (552)
++++ .+++|+.||.|++||++++. ++..+ ..|...|.+++|+ +.+|++++.||.|++||++
T Consensus 196 ~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 275 (408)
T 4a11_B 196 PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSS 275 (408)
T ss_dssp SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 8887 69999999999999998765 44444 5788999999999 3499999999999999999
Q ss_pred CCceeEEEecCC----CCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEe--cCCEEEEEeC
Q 008820 411 DHSLLTVLEEDS----SGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGW 482 (552)
Q Consensus 411 ~~~~~~~~~~~~----~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~sgs~ 482 (552)
+++......... ...... ......+..+++++.++.|++||.. +.+..+.+|...|.++.| ++++|++++.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 354 (408)
T 4a11_B 276 NGENTLVNYGKVCNNSKKGLKF-TVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSR 354 (408)
T ss_dssp TCCBCCCCCCCCCCCCSSCCCC-EECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEET
T ss_pred CCccceecccccccccccccee-EEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECC
Confidence 987654443221 111111 2233445567777889999999964 577888999999999887 8999999999
Q ss_pred CCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEe-CCeEEEEeCCCeEEEEEec
Q 008820 483 DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QGKLFVGCADRTVKIALCN 537 (552)
Q Consensus 483 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~Dg~v~iw~~~ 537 (552)
||.|++||+.+.+......... ....+... ...+.+++.|+.+++|+.+
T Consensus 355 dg~i~iw~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 355 DCNILAWVPSLYEPVPDDDETT------TKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp TSCEEEEEECC---------------------------------------------
T ss_pred CCeEEEEeCCCCCccCCCCceE------eccccccccceeecccCccCceeecCCc
Confidence 9999999999876544322211 11112221 2336678889999999876
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-28 Score=236.81 Aligned_cols=266 Identities=20% Similarity=0.291 Sum_probs=216.3
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEEe---------ecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCC---e
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKDL---------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF---S 283 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~---~ 283 (552)
+...+..+.+ +.+..++++..++.+.+|++ .+|.+.|.+++|+ ++++++++.||.|++|++.+. +
T Consensus 17 h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~ 95 (313)
T 3odt_A 17 HDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGED 95 (313)
T ss_dssp CSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSC
T ss_pred CCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCC
Confidence 3445777777 77888999999999999984 5689999999999 999999999999999998654 6
Q ss_pred EEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCc
Q 008820 284 HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT 363 (552)
Q Consensus 284 ~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~ 363 (552)
.+..+.+|...|.+++|. +.++++++.||.|++||.. .....+..+.. ....+....++++.+++++.||.
T Consensus 96 ~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d~~-----~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~d~~ 166 (313)
T 3odt_A 96 PLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWKEG-----SLVYNLQAHNA-SVWDAKVVSFSENKFLTASADKT 166 (313)
T ss_dssp C-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETT-----EEEEEEECCSS-CEEEEEEEETTTTEEEEEETTSC
T ss_pred cccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEcCC-----cEEEecccCCC-ceeEEEEccCCCCEEEEEECCCC
Confidence 678889999999999993 3488999999999999922 22333333322 22333333348899999999999
Q ss_pred EEEEECCCCceeEEecC-CCCCeEEEEEe-CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEE
Q 008820 364 IKAWSLLDGTLSCTMSG-HKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVV 441 (552)
Q Consensus 364 i~iwd~~~~~~~~~~~~-h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 441 (552)
|++|| ..+....+.. |...+.+++|+ ++.+++++.||.|++||+++++.+..+..+. ..+.. ++|+|++ .+++
T Consensus 167 i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~-~~~~~~~-~l~~ 241 (313)
T 3odt_A 167 IKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHE-SFVYC-IKLLPNG-DIVS 241 (313)
T ss_dssp EEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEE-EEECTTS-CEEE
T ss_pred EEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCC-ceEEE-EEEecCC-CEEE
Confidence 99999 5667777777 99999999999 6689999999999999999999999988663 44555 6999999 5889
Q ss_pred EECCCcEEEEeCC--cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeee
Q 008820 442 SHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEED 499 (552)
Q Consensus 442 g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~ 499 (552)
++.||.|++||.. +....+..|...|.++.+ +++ +++++.||.|++||+++++....
T Consensus 242 ~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 242 CGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp EETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred EecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence 9999999999965 567788899999999988 666 67799999999999998765544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-28 Score=268.22 Aligned_cols=309 Identities=18% Similarity=0.247 Sum_probs=243.3
Q ss_pred ccccceeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEE
Q 008820 220 ADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF 288 (552)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~ 288 (552)
..+..+.+++.+..++++..++.+.+|+ +.+|.++|++++|+ +++|++|+.||.|++||+.+++.+..+
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 93 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF 93 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 3477888899999999999999998887 46799999999999 899999999999999999999999999
Q ss_pred eCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEee-CCCEEEEeeCCCcEEEE
Q 008820 289 KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAW 367 (552)
Q Consensus 289 ~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sgs~dg~i~iw 367 (552)
.+|.+.|.+++|+|++. ++++++.||.|++||++++.. .......+.. .....+++| +++.+++++.||.|++|
T Consensus 94 ~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~--~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~v~vw 168 (814)
T 3mkq_A 94 EAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWA--LEQTFEGHEH--FVMCVAFNPKDPSTFASGCLDRTVKVW 168 (814)
T ss_dssp ECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSE--EEEEEECCSS--CEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred ecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCce--EEEEEcCCCC--cEEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 99999999999999766 678999999999999986521 2222222222 123446777 77899999999999999
Q ss_pred ECCCCceeEEecCCC-CCeEEEEEeC----CEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEE
Q 008820 368 SLLDGTLSCTMSGHK-SAVSTLAVCN----GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS 442 (552)
Q Consensus 368 d~~~~~~~~~~~~h~-~~v~~l~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 442 (552)
|+.+++....+..+. ..+.+++|++ .++++++.||.|++||+++++.+..+..+. ..+.. ++|+|++++++++
T Consensus 169 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~v~~-~~~~~~~~~l~~~ 246 (814)
T 3mkq_A 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM-SNVSF-AVFHPTLPIIISG 246 (814)
T ss_dssp ETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS-SCEEE-EEECSSSSEEEEE
T ss_pred ECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC-CCEEE-EEEcCCCCEEEEE
Confidence 999888887776555 8899999973 399999999999999999999988887663 44544 6999999999999
Q ss_pred ECCCcEEEEeCC--cceeeeecccceEEEEEe--cCC--EEEEEeCCCeEEEEecCCCeeeeeeccCC------------
Q 008820 443 HESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGK--WLFTGGWDKTVSVQELAGDEFEEDVIPTG------------ 504 (552)
Q Consensus 443 ~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~--~l~sgs~dg~i~iwd~~~~~~~~~~~~~~------------ 504 (552)
+.||.|++||.. +....+..|...+.++++ ++. ++++++ |+.+.+|++............+
T Consensus 247 ~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 325 (814)
T 3mkq_A 247 SEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAA 325 (814)
T ss_dssp ETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCT
T ss_pred eCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccccc
Confidence 999999999965 567788889999999987 555 455555 6778889876432111110000
Q ss_pred --------------------------CcccCcceEEEEEeC-Ce-EEEEeCCCeEEEEEec
Q 008820 505 --------------------------AIPCGSVITALLYWQ-GK-LFVGCADRTVKIALCN 537 (552)
Q Consensus 505 --------------------------~~~~~~~v~~l~~~~-~~-l~s~s~Dg~v~iw~~~ 537 (552)
...+...+.+++|+| +. +++++ ||.+.+|++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~ 385 (814)
T 3mkq_A 326 SDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTAL 385 (814)
T ss_dssp TCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETT
T ss_pred eeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECc
Confidence 011233478899995 33 55565 8999999975
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=262.11 Aligned_cols=256 Identities=11% Similarity=0.066 Sum_probs=193.9
Q ss_pred ceEEEeeCCCeEEEEEe-------------ecCccceEEEEEc-C-------CEEEEEeCCCcEEEEeCCCCeE------
Q 008820 232 KDLVNGLSKGNVKFKDL-------------QGHRDCVTGLAVG-G-------GFLFSSSFDKSIHVWSLKDFSH------ 284 (552)
Q Consensus 232 ~~~~~~~~~~~~~~~~l-------------~~H~~~V~~l~~s-~-------~~l~s~s~dg~I~iwd~~~~~~------ 284 (552)
..++++..++.+++|++ .+|.+.|++++|+ . ++||+|+.||+|++||+.+++.
T Consensus 174 ~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~ 253 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK 253 (524)
T ss_dssp --------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE
T ss_pred hhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce
Confidence 34556667788888875 3567889999998 2 5999999999999999986632
Q ss_pred -----EEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeE-EEEeeCC-CEEEE
Q 008820 285 -----VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGI-HALTTSG-RYLYT 357 (552)
Q Consensus 285 -----~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~l~s 357 (552)
..++.+|...|++++|++++ .|++|+.||+|++||++++.. +...+..+.. ....+ .++++++ ++|++
T Consensus 254 ~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~--~~~~~~~H~~-~V~sv~~~~s~~g~~~laS 328 (524)
T 2j04_B 254 MCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEV--PSFYDQVHDS-YILSVSTAYSDFEDTVVST 328 (524)
T ss_dssp CCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSS--CSEEEECSSS-CEEEEEEECCTTSCCEEEE
T ss_pred eecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCC--ceEEeecccc-cEEEEEEEcCCCCCeEEEE
Confidence 24788999999999999743 789999999999999986532 2222333333 33334 2567777 79999
Q ss_pred eeCCCcEEEEECCCCceeEEecCCCC--CeEEEEEeC-C-EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEc
Q 008820 358 GSGDRTIKAWSLLDGTLSCTMSGHKS--AVSTLAVCN-G-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLT 433 (552)
Q Consensus 358 gs~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s 433 (552)
|+.|++|++||++++++...+.+|.. .|.+++|++ + .+++++.|++|++||++++.++..+..| .+.+.+ ++|+
T Consensus 329 ~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH-~~~V~s-va~S 406 (524)
T 2j04_B 329 VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR-ETTITA-IGVS 406 (524)
T ss_dssp EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEEC-SSCEEE-EECC
T ss_pred eccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecC-CCceEE-EEeC
Confidence 99999999999999888777776653 588999994 3 8999999999999999999988888775 456666 6999
Q ss_pred CCCCEEEEEECCCcEEEEeCCc----------------------------------------------ceeeeecccceE
Q 008820 434 AVQHTLVVSHESGSIKVWRNDK----------------------------------------------FMKSMQTHKGSV 467 (552)
Q Consensus 434 ~~~~~l~~g~~dg~i~iwd~~~----------------------------------------------~~~~~~~h~~~v 467 (552)
|++++|++|+.||+|++||... ....+.+|...|
T Consensus 407 p~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V 486 (524)
T 2j04_B 407 RLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINI 486 (524)
T ss_dssp SSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSC
T ss_pred CCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceE
Confidence 9999999999999999997320 011233467778
Q ss_pred EEEEe--c---CCEEEEEeCCCeEEEEecCCC
Q 008820 468 FAVFL--E---GKWLFTGGWDKTVSVQELAGD 494 (552)
Q Consensus 468 ~~v~~--~---~~~l~sgs~dg~i~iwd~~~~ 494 (552)
.+++| + +..+++|+.||.|+||++...
T Consensus 487 ~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 487 TCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred EEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 88887 4 349999999999999998754
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-29 Score=252.44 Aligned_cols=268 Identities=14% Similarity=0.196 Sum_probs=210.6
Q ss_pred CCccccceeeec-CcceEEEeeCCCeEEEEEee--------------cCccceEEEEEc--CCEEEEEeCCCcEEEEeCC
Q 008820 218 DGADIDQARAAG-GVKDLVNGLSKGNVKFKDLQ--------------GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK 280 (552)
Q Consensus 218 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~--------------~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~ 280 (552)
+...+..+.+++ ++..++++..++.+++|++. +|.+.|++++|+ +++|++|+.||+|++||+.
T Consensus 62 h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~ 141 (437)
T 3gre_A 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVN 141 (437)
T ss_dssp TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEE
T ss_pred CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEec
Confidence 445688999999 89999999999999999852 588999999998 8999999999999999994
Q ss_pred ---CCeEEEEEeC------------CCCCeEEEEEec-CCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeee
Q 008820 281 ---DFSHVHTFKG------------HDHKVMAVVYVD-EDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSG 344 (552)
Q Consensus 281 ---~~~~~~~~~~------------h~~~v~~v~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 344 (552)
+++....+.+ +...+.++.+.. .++.++++++.|+.|++||+++......+.... +. ....
T Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-h~--~~v~ 218 (437)
T 3gre_A 142 HYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSP-RH--GAVS 218 (437)
T ss_dssp EEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCG-GG--CCEE
T ss_pred cccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCC-CC--CceE
Confidence 5555544432 445566666331 245688999999999999998765433333210 11 2233
Q ss_pred EEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEec-CCCCCeEEEEEeC-----C-EEEEEeCCCcEEEEECCCCceeEE
Q 008820 345 IHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMS-GHKSAVSTLAVCN-----G-VLYSGSRDGTIRLWSLSDHSLLTV 417 (552)
Q Consensus 345 ~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~-----~-~l~s~~~dg~i~iwd~~~~~~~~~ 417 (552)
..++++++++|++|+.||.|++||+++++++..+. .|...|+++++++ + ++++++.||.|++||+++++.+..
T Consensus 219 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 298 (437)
T 3gre_A 219 SICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYA 298 (437)
T ss_dssp EEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEE
Confidence 45778899999999999999999999999999886 7888999997762 2 899999999999999999998888
Q ss_pred EecCC-------------------------CCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeeec--------
Q 008820 418 LEEDS-------------------------SGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQT-------- 462 (552)
Q Consensus 418 ~~~~~-------------------------~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~-------- 462 (552)
+..+. ...+.+ ++++ ++++|++|+.||.|++||+.+ ....+.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~-l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 376 (437)
T 3gre_A 299 FINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALST-ISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVF 376 (437)
T ss_dssp EESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCC-EEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEE
T ss_pred EEcCCCCCccceecccccccccceecccccCCceEE-EEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceE
Confidence 87542 222333 5777 778999999999999999653 3344443
Q ss_pred -----------------------------ccceEEEEEe--c--CCEEEEEeCCCeEEEEe
Q 008820 463 -----------------------------HKGSVFAVFL--E--GKWLFTGGWDKTVSVQE 490 (552)
Q Consensus 463 -----------------------------h~~~v~~v~~--~--~~~l~sgs~dg~i~iwd 490 (552)
|...|.++.+ + +.+|++|+.||.|++|+
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 377 IPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8889999887 4 66999999999999995
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-28 Score=244.50 Aligned_cols=262 Identities=17% Similarity=0.203 Sum_probs=206.0
Q ss_pred ccccceeeecCc-ceEEEeeCCCeEEEEEee-----------cCccceEEEEEc---CCEEEEEeCCCcEEEEeCCCCeE
Q 008820 220 ADIDQARAAGGV-KDLVNGLSKGNVKFKDLQ-----------GHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFSH 284 (552)
Q Consensus 220 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~-----------~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~~~~ 284 (552)
..+..+.+++.+ ..++++..++.+.+|++. +|.+.|.+++|+ +++|++++.|++|++||+.+ ..
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~ 152 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SV 152 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-Cc
Confidence 447788888887 899999999999999853 699999999998 58999999999999999986 55
Q ss_pred EEEEeCC---CCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCC-EEEEeeC
Q 008820 285 VHTFKGH---DHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSG 360 (552)
Q Consensus 285 ~~~~~~h---~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~ 360 (552)
+..+..| ...|.+++|+|++. ++++++.|+.|++||++ + ..+..+..+.. .....+++++++ ++++|+.
T Consensus 153 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~-~---~~~~~~~~h~~--~v~~~~~~~~~~~~l~s~~~ 225 (383)
T 3ei3_B 153 IQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD-G---HEIFKEKLHKA--KVTHAEFNPRCDWLMATSSV 225 (383)
T ss_dssp EEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT-S---CEEEEEECSSS--CEEEEEECSSCTTEEEEEET
T ss_pred eEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC-C---CEEEEeccCCC--cEEEEEECCCCCCEEEEEeC
Confidence 6666544 48899999999665 88999999999999984 2 23333333332 223457788888 9999999
Q ss_pred CCcEEEEECCC----CceeEEecCCCCCeEEEEEeC---CEEEEEeCCCcEEEEECCCCceeEEEecCCC------Cce-
Q 008820 361 DRTIKAWSLLD----GTLSCTMSGHKSAVSTLAVCN---GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS------GAV- 426 (552)
Q Consensus 361 dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~- 426 (552)
|+.|++||+++ +.++..+ +|...|++++|++ .+|++++.|+.|++||+++++....+..+.. ..+
T Consensus 226 d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (383)
T 3ei3_B 226 DATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK 304 (383)
T ss_dssp TSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC
T ss_pred CCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceE
Confidence 99999999987 6666666 6999999999985 4999999999999999999887666654321 111
Q ss_pred --------EEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeec--ccceEEEEEe--cCCEEEEEeCCCeEEEEecC
Q 008820 427 --------SSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQT--HKGSVFAVFL--EGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 427 --------~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~--h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~ 492 (552)
...++++|++++ +|+.||.|++||.. +.+..+.+ |...+..++| ++++|++|+ ||.|++||++
T Consensus 305 ~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 305 ATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp CEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred EeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence 112456666666 67789999999964 56677776 4566666565 899999998 9999999987
Q ss_pred C
Q 008820 493 G 493 (552)
Q Consensus 493 ~ 493 (552)
+
T Consensus 382 ~ 382 (383)
T 3ei3_B 382 D 382 (383)
T ss_dssp -
T ss_pred C
Confidence 5
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-27 Score=230.95 Aligned_cols=260 Identities=17% Similarity=0.300 Sum_probs=204.1
Q ss_pred cceeeecCcceEEEeeCCCeEEEEE-----------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q 008820 223 DQARAAGGVKDLVNGLSKGNVKFKD-----------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFK 289 (552)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 289 (552)
+.+.+++++ .++.+ .++.+++|+ +.+|...|++++|+ +++|++|+.||+|++||+++++.+..+.
T Consensus 29 ~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~ 106 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT 106 (318)
T ss_dssp BCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred eEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec
Confidence 334454432 34433 366677765 34788999999999 8999999999999999999999999999
Q ss_pred CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEEC
Q 008820 290 GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSL 369 (552)
Q Consensus 290 ~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~ 369 (552)
+|...+.++.+.+ .++++++.++.+++|+...... .+.....+.. ......+.++++++++++.||.|++||+
T Consensus 107 ~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 107 SHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEH--HVATLSGHSQ--EVCGLRWAPDGRHLASGGNDNLVNVWPS 179 (318)
T ss_dssp CCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC--EEEEEECCSS--CEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred CccceEEEeecCC---CEEEEEecCCceEeeecCCCce--eEEEEcCccC--ceEEEEEcCCCCEEEEEecCcceeEEEC
Confidence 9999998877643 4889999999999999876432 2222223222 2234567888999999999999999999
Q ss_pred CCCce----eEEecCCCCCeEEEEEe--C-CE--EEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEE
Q 008820 370 LDGTL----SCTMSGHKSAVSTLAVC--N-GV--LYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLV 440 (552)
Q Consensus 370 ~~~~~----~~~~~~h~~~v~~l~~~--~-~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 440 (552)
++++. ......|.+.|.++.+. + .. +++++.+++|++||.+........... ..+.. +.++++++.++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~--~~v~~-~~~~~~~~~~~ 256 (318)
T 4ggc_A 180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH--SQVCS-ILWSPHYKELI 256 (318)
T ss_dssp SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS--SCEEE-EEEETTTTEEE
T ss_pred CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce--eeeee-eeecccccceE
Confidence 87653 44566788899999998 2 23 356778999999999998877766544 33444 68889988887
Q ss_pred EEE--CCCcEEEEeCC--cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCC
Q 008820 441 VSH--ESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGD 494 (552)
Q Consensus 441 ~g~--~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~ 494 (552)
+++ .|+.|++||.. +++..+.+|.+.|++++| ++++|+|||.||+|++||+.+.
T Consensus 257 ~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 257 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 765 79999999964 578889999999999987 8999999999999999999653
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-29 Score=241.94 Aligned_cols=233 Identities=23% Similarity=0.305 Sum_probs=183.5
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEE-----------eecCccceEEEEEc----CCEEEEEeCCCcEEEEeCCCC
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKD-----------LQGHRDCVTGLAVG----GGFLFSSSFDKSIHVWSLKDF 282 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~H~~~V~~l~~s----~~~l~s~s~dg~I~iwd~~~~ 282 (552)
+...+..+.+++.++.++++..++.+++|+ +.+|.++|++++|+ +++|+||+.|++|++||+.++
T Consensus 12 H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~ 91 (316)
T 3bg1_A 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG 91 (316)
T ss_dssp --CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSS
T ss_pred ccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC
Confidence 445688899999999999999999998886 45899999999996 689999999999999999887
Q ss_pred --eEEEEEeCCCCCeEEEEEecCC-CCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeC--------
Q 008820 283 --SHVHTFKGHDHKVMAVVYVDED-QPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTS-------- 351 (552)
Q Consensus 283 --~~~~~~~~h~~~v~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 351 (552)
+....+.+|...|.+++|+|++ ..+|++|+.|++|++||++.............+.. . ....+++|+
T Consensus 92 ~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~-~-v~~~~~~~~~~~~~~~~ 169 (316)
T 3bg1_A 92 TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI-G-CNAVSWAPAVVPGSLID 169 (316)
T ss_dssp CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS-C-BCCCEECCCCCC-----
T ss_pred cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccC-C-cceEEEccccCCccccc
Confidence 4677888999999999999974 56889999999999999986532211222222221 1 112345554
Q ss_pred ---------CCEEEEeeCCCcEEEEECCCC---ceeEEecCCCCCeEEEEEeC------CEEEEEeCCCcEEEEECCCC-
Q 008820 352 ---------GRYLYTGSGDRTIKAWSLLDG---TLSCTMSGHKSAVSTLAVCN------GVLYSGSRDGTIRLWSLSDH- 412 (552)
Q Consensus 352 ---------~~~l~sgs~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~------~~l~s~~~dg~i~iwd~~~~- 412 (552)
+++|++|+.|+.|++||++.. +++..+.+|...|.+++|++ .+|++++.|++|++||+++.
T Consensus 170 ~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~ 249 (316)
T 3bg1_A 170 HPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDAS 249 (316)
T ss_dssp -CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTT
T ss_pred cccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcc
Confidence 468999999999999999755 46677899999999999983 47999999999999999763
Q ss_pred --c-eeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 008820 413 --S-LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND 454 (552)
Q Consensus 413 --~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 454 (552)
+ ....+..+ ...+.. ++|+|++++|++++.||+|++|+..
T Consensus 250 ~~~~~~~~~~~~-~~~v~~-v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 250 SNTWSPKLLHKF-NDVVWH-VSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CCCCBCCEEEEC-SSCEEE-EEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ccchhhhhhhcC-CCcEEE-EEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 1 12223333 455555 6999999999999999999999954
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=242.03 Aligned_cols=277 Identities=10% Similarity=0.067 Sum_probs=209.8
Q ss_pred cceEEEEEc--CCEEEEEeCCCcEEEEeCCCCe---EEEEEeC-------------------------------------
Q 008820 253 DCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS---HVHTFKG------------------------------------- 290 (552)
Q Consensus 253 ~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~---~~~~~~~------------------------------------- 290 (552)
.++.+++|+ |++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578899998 7755555 57799999999888 6666553
Q ss_pred -----------------CCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC--CCCCCccccccccCCCceeeeEEEEeeC
Q 008820 291 -----------------HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS--FPLGHEPLKKWNEEKDWRYSGIHALTTS 351 (552)
Q Consensus 291 -----------------h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (552)
|.+.|.+++|+|++..++++++.||.|++||+. ++.....+.... +. ......+++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~--~~v~~~~~sp~ 160 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC-FS--KRPNAISIAED 160 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE-CS--SCEEEEEECTT
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc-CC--CCceEEEEcCC
Confidence 333799999999888667999999999999998 554333332211 11 12234578889
Q ss_pred CCEEEEeeCCCcEEEEECCCCceeE----EecCCCCCeEEEEEe-C---C-EEEEEeCCCcEEEEECCCCceeEEEecCC
Q 008820 352 GRYLYTGSGDRTIKAWSLLDGTLSC----TMSGHKSAVSTLAVC-N---G-VLYSGSRDGTIRLWSLSDHSLLTVLEEDS 422 (552)
Q Consensus 352 ~~~l~sgs~dg~i~iwd~~~~~~~~----~~~~h~~~v~~l~~~-~---~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 422 (552)
+++|++|+.||.|++|++.+++... .+.+|...|++++|+ + + +|++++.|++|++||+++++.+..+...+
T Consensus 161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h 240 (450)
T 2vdu_B 161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH 240 (450)
T ss_dssp SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC
T ss_pred CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC
Confidence 9999999999999999998877554 778899999999999 5 5 89999999999999999999888865444
Q ss_pred CCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeeec-------------------------ccceEEEEEe--c
Q 008820 423 SGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQT-------------------------HKGSVFAVFL--E 473 (552)
Q Consensus 423 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~-------------------------h~~~v~~v~~--~ 473 (552)
...+.+ ++|+ ++++|++|+.|+.|++||+.+ .+..+.. +...|.++.+ +
T Consensus 241 ~~~v~~-~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 241 KHFVSS-ICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp SSCEEE-EEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred CCceEE-EEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence 566666 6899 999999999999999999653 4445542 2345777776 7
Q ss_pred CCEEEEEe-CCCeEEEEec--CCC---eeeeeeccCCCcccCcceEEEEEeCCe-EEEEeC-------CCeEEEEEecCC
Q 008820 474 GKWLFTGG-WDKTVSVQEL--AGD---EFEEDVIPTGAIPCGSVITALLYWQGK-LFVGCA-------DRTVKIALCNRQ 539 (552)
Q Consensus 474 ~~~l~sgs-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~s~s~-------Dg~v~iw~~~~~ 539 (552)
+++|++++ .|+.|++||+ .++ .....+.. ...|.+++|+++. +++.+. +..|.+|.++..
T Consensus 319 ~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~------~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 319 LPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF------PYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp SSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC------SSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred CCEEEEEECCCCeEEEEEeccCCCCceeeccEecc------CCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 99999999 8999999999 443 23222222 3569999999876 444332 556899998754
Q ss_pred cc
Q 008820 540 IP 541 (552)
Q Consensus 540 ~~ 541 (552)
..
T Consensus 393 ~~ 394 (450)
T 2vdu_B 393 EN 394 (450)
T ss_dssp TT
T ss_pred CC
Confidence 43
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-27 Score=235.59 Aligned_cols=267 Identities=13% Similarity=0.128 Sum_probs=201.4
Q ss_pred CccccceeeecCcceEEEeeCCC-------eEEEEE-------------------eecCccceEEEEEcCCEEEEEe---
Q 008820 219 GADIDQARAAGGVKDLVNGLSKG-------NVKFKD-------------------LQGHRDCVTGLAVGGGFLFSSS--- 269 (552)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-------------------l~~H~~~V~~l~~s~~~l~s~s--- 269 (552)
+.++.++.|++++..++++..+. ++++|+ |.+|.+.|.+++++++.+++|+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 45688999999999999886432 477776 3578889999999988888764
Q ss_pred --------CCCcEEEEeCCCCeE----EEEE-----eCCCCCeEEEEEecCCCCEE-EEEcCCCcEEEEeCCCCCCCccc
Q 008820 270 --------FDKSIHVWSLKDFSH----VHTF-----KGHDHKVMAVVYVDEDQPLC-ISGDSGGGIFVWSFSFPLGHEPL 331 (552)
Q Consensus 270 --------~dg~I~iwd~~~~~~----~~~~-----~~h~~~v~~v~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~ 331 (552)
.|+++|+|++.+... .... ..+...+.+++|+|++..++ ++++.|++|++||+.+......+
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~ 173 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI 173 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe
Confidence 477899998765432 1222 12455689999999888664 45667999999999876544333
Q ss_pred cccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEE--ecCCCCCeEEEEEe-CC-EEEEEeCCC----c
Q 008820 332 KKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT--MSGHKSAVSTLAVC-NG-VLYSGSRDG----T 403 (552)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~-~~-~l~s~~~dg----~ 403 (552)
. +.. . ....+|+|+++++++++.+ .+.+|+..+++.+.. ...|...|.+++|+ ++ .+++++.|+ .
T Consensus 174 ~----~~~-~-V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~ 246 (365)
T 4h5i_A 174 E----TRG-E-VKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIV 246 (365)
T ss_dssp E----CSS-C-CCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEE
T ss_pred C----CCC-c-eEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeE
Confidence 2 111 1 2345889999999999855 577787777776543 45688899999999 44 888888887 6
Q ss_pred EEEEECCCCcee----EEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceee-eecccceEEEEEe--cC
Q 008820 404 IRLWSLSDHSLL----TVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKS-MQTHKGSVFAVFL--EG 474 (552)
Q Consensus 404 i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~-~~~h~~~v~~v~~--~~ 474 (552)
++.||+...... ..+..+ ...+.+ ++|+|+|++|++|+.|++|+|||..+ ++.. +.+|...|++++| ||
T Consensus 247 i~~~~~~~~~~~~~~~~~~~~~-~~~V~~-~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg 324 (365)
T 4h5i_A 247 LTKISIKSGNTSVLRSKQVTNR-FKGITS-MDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDS 324 (365)
T ss_dssp EEEEEEETTEEEEEEEEEEESS-CSCEEE-EEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTS
T ss_pred EeecccccceecceeeeeecCC-CCCeEe-EEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCC
Confidence 889998776542 333433 344554 69999999999999999999999754 5555 4789999999987 99
Q ss_pred CEEEEEeCCCeEEEEecCCC
Q 008820 475 KWLFTGGWDKTVSVQELAGD 494 (552)
Q Consensus 475 ~~l~sgs~dg~i~iwd~~~~ 494 (552)
++|+|||.|++|+|||+...
T Consensus 325 ~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 325 TYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999643
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=246.24 Aligned_cols=252 Identities=14% Similarity=0.206 Sum_probs=204.1
Q ss_pred CCCeEEEEEeecCccceEEEEEc---CCEEEEEeCCCcEEEEeCCC----------CeEEEEEeCCCCCeEEEEEecCCC
Q 008820 239 SKGNVKFKDLQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKD----------FSHVHTFKGHDHKVMAVVYVDEDQ 305 (552)
Q Consensus 239 ~~~~~~~~~l~~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~----------~~~~~~~~~h~~~v~~v~~~~~~~ 305 (552)
..+.+.+....+|.+.|++++|+ +.+|++++.||.|++||+.+ .+.+..+.+|...|.+++|+|++.
T Consensus 115 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 194 (430)
T 2xyi_A 115 VCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN 194 (430)
T ss_dssp ---CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST
T ss_pred CCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC
Confidence 34556667788999999999998 46899999999999999986 677888999999999999999888
Q ss_pred CEEEEEcCCCcEEEEeCCCCCCCcc----ccccccCCCceeeeEEEEee-CCCEEEEeeCCCcEEEEECCCC---ceeEE
Q 008820 306 PLCISGDSGGGIFVWSFSFPLGHEP----LKKWNEEKDWRYSGIHALTT-SGRYLYTGSGDRTIKAWSLLDG---TLSCT 377 (552)
Q Consensus 306 ~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~l~sgs~dg~i~iwd~~~~---~~~~~ 377 (552)
.+|++|+.||.|++||+........ ...+..+.. .....++++ ++..|++++.||.|++||++++ +.+..
T Consensus 195 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~ 272 (430)
T 2xyi_A 195 GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA--VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT 272 (430)
T ss_dssp TEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSS--CEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE
T ss_pred CeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCC--CEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE
Confidence 7999999999999999987433211 222222222 122346667 5679999999999999999987 57778
Q ss_pred ecCCCCCeEEEEEe--CC-EEEEEeCCCcEEEEECCC-CceeEEEecCCCCceEEEEEEcCCCC-EEEEEECCCcEEEEe
Q 008820 378 MSGHKSAVSTLAVC--NG-VLYSGSRDGTIRLWSLSD-HSLLTVLEEDSSGAVSSVLSLTAVQH-TLVVSHESGSIKVWR 452 (552)
Q Consensus 378 ~~~h~~~v~~l~~~--~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iwd 452 (552)
+..|...|++++|+ +. ++++|+.||.|++||+++ ...+..+..+ ...+.+ +.|+|+++ ++++++.||.|++||
T Consensus 273 ~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h-~~~v~~-i~~sp~~~~~l~s~~~d~~i~iwd 350 (430)
T 2xyi_A 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH-KDEIFQ-VQWSPHNETILASSGTDRRLHVWD 350 (430)
T ss_dssp EECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC-SSCEEE-EEECSSCTTEEEEEETTSCCEEEE
T ss_pred eecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC-CCCEEE-EEECCCCCCEEEEEeCCCcEEEEe
Confidence 88999999999999 23 799999999999999998 5567777765 445555 69999984 799999999999999
Q ss_pred CCc----------------ceeeeecccceEEEEEe--cCC-EEEEEeCCCeEEEEecCCC
Q 008820 453 NDK----------------FMKSMQTHKGSVFAVFL--EGK-WLFTGGWDKTVSVQELAGD 494 (552)
Q Consensus 453 ~~~----------------~~~~~~~h~~~v~~v~~--~~~-~l~sgs~dg~i~iwd~~~~ 494 (552)
+.. .+..+.+|...|.++.| ++. +|++++.||.|++|++...
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 351 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp GGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 653 44566789999999988 666 8999999999999999754
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=236.34 Aligned_cols=278 Identities=11% Similarity=0.129 Sum_probs=199.9
Q ss_pred EEEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEe
Q 008820 244 KFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (552)
Q Consensus 244 ~~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 321 (552)
.+..+.+|.+.|++++|+ +++|++|+.|+ +++||+++++.......+ .+..+++.++++.++++++.|++|++||
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWD 87 (355)
T ss_dssp --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence 455678999999999999 89999988775 889999988776655433 4778888887776778889999999999
Q ss_pred CCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCC-ceeEEecCCCCCeEEEEEeCCEEEE--E
Q 008820 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDG-TLSCTMSGHKSAVSTLAVCNGVLYS--G 398 (552)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~l~s--~ 398 (552)
+.+++....+. .. ..+.++..+++.++++. |+.|++||+.++ +.+..+.. +...++++.+.+++ |
T Consensus 88 ~~~~~~~~~~~---~~-----~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~~~la~~sg 155 (355)
T 3vu4_A 88 DVKKQDVSRIK---VD-----APVKDLFLSREFIVVSY-GDVISVFKFGNPWKRITDDIR---FGGVCEFSNGLLVYSNE 155 (355)
T ss_dssp TTTTEEEEEEE---CS-----SCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSSCCEE---EEEEEEEETTEEEEEES
T ss_pred CCCCcEEEEEE---CC-----CceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeEEecc---CCceEEEEccEEEEeCC
Confidence 98765433322 11 13556666777666654 689999999988 66666554 34445556676666 5
Q ss_pred eCCCcEEEEECCCCc----------------eeEEEecCCCCceEEEEEEcCCCCEEEEEECCCc-EEEEeCC--cceee
Q 008820 399 SRDGTIRLWSLSDHS----------------LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGS-IKVWRND--KFMKS 459 (552)
Q Consensus 399 ~~dg~i~iwd~~~~~----------------~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~-i~iwd~~--~~~~~ 459 (552)
+.||.|++||+++++ .+..+..| .+.+.+ ++|+|++++|++|+.||+ |++||.. +.+..
T Consensus 156 ~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h-~~~v~~-~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~ 233 (355)
T 3vu4_A 156 FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH-TNPIKM-VRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE 233 (355)
T ss_dssp SCTTCEEEEECCC------------------CCEEECCC-SSCEEE-EEECTTSSEEEEEETTCSEEEEEETTTCCEEEE
T ss_pred CcCcEEEEEECCCCCccccccccccccccCcccEEEEcc-CCceEE-EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 899999999999865 15666655 455555 699999999999999998 9999965 56777
Q ss_pred ee-c-ccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCC------------------CcccCcceEEEEE
Q 008820 460 MQ-T-HKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTG------------------AIPCGSVITALLY 517 (552)
Q Consensus 460 ~~-~-h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~------------------~~~~~~~v~~l~~ 517 (552)
+. + |...|.+++| ++++|++++.|++|++||+............. ..........++|
T Consensus 234 ~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (355)
T 3vu4_A 234 FRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAW 313 (355)
T ss_dssp EECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEE
T ss_pred EEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEE
Confidence 77 5 9999999987 89999999999999999997653211100000 0001122366888
Q ss_pred eC-C-eEEEEeCCCeEEEEEecC
Q 008820 518 WQ-G-KLFVGCADRTVKIALCNR 538 (552)
Q Consensus 518 ~~-~-~l~s~s~Dg~v~iw~~~~ 538 (552)
++ + .+++++.||.+++|++..
T Consensus 314 ~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 314 ISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp SSSSEEEEEETTTTEEEEEEEEE
T ss_pred eCCCCEEEEEeCCCeEEEEEEEc
Confidence 84 3 599999999999999874
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-27 Score=229.18 Aligned_cols=262 Identities=15% Similarity=0.102 Sum_probs=214.8
Q ss_pred CCCccccceeeecCcceEEEeeCCCeEEEEEe------------ecCccceEEEEEc--CC-EEEEEeCCCcEEEEeC-C
Q 008820 217 SDGADIDQARAAGGVKDLVNGLSKGNVKFKDL------------QGHRDCVTGLAVG--GG-FLFSSSFDKSIHVWSL-K 280 (552)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------------~~H~~~V~~l~~s--~~-~l~s~s~dg~I~iwd~-~ 280 (552)
.+...+..+.+++.+..++++..++.+.+|++ .+|...|++++|+ ++ +|++|+.||.|++||+ .
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 88 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence 34456888899999999999999999998874 3688999999998 88 9999999999999999 8
Q ss_pred CCeEEEEEeC--CCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCC---------CCCCccccccccCCCceeeeEEEEe
Q 008820 281 DFSHVHTFKG--HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF---------PLGHEPLKKWNEEKDWRYSGIHALT 349 (552)
Q Consensus 281 ~~~~~~~~~~--h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (552)
+++. ..+.+ |...|.+++|+| ..++++++.|+.|++||+++ ......+. + ...+.++.
T Consensus 89 ~~~~-~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----~----~~~v~~~~ 157 (342)
T 1yfq_A 89 SPSF-QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK----V----KNKIFTMD 157 (342)
T ss_dssp SSSE-EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS----S----CCCEEEEE
T ss_pred CCce-EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe----e----CCceEEEE
Confidence 7765 77788 999999999999 55889999999999999885 33222222 1 12344555
Q ss_pred eCCCEEEEeeCCCcEEEEECCC-Cc--eeEEecCCCCCeEEEEEeC---CEEEEEeCCCcEEEEECCCC------ceeEE
Q 008820 350 TSGRYLYTGSGDRTIKAWSLLD-GT--LSCTMSGHKSAVSTLAVCN---GVLYSGSRDGTIRLWSLSDH------SLLTV 417 (552)
Q Consensus 350 ~~~~~l~sgs~dg~i~iwd~~~-~~--~~~~~~~h~~~v~~l~~~~---~~l~s~~~dg~i~iwd~~~~------~~~~~ 417 (552)
.+++.+++++.|+.|++||+++ +. .......|...|.+++|++ .++++++.||.|++||++.. +....
T Consensus 158 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred ecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence 5555699999999999999988 54 3345567889999999985 39999999999999999887 77777
Q ss_pred EecCCC--------CceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecc-cceEEEEEecCCEEEEEeCCCe-
Q 008820 418 LEEDSS--------GAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTH-KGSVFAVFLEGKWLFTGGWDKT- 485 (552)
Q Consensus 418 ~~~~~~--------~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h-~~~v~~v~~~~~~l~sgs~dg~- 485 (552)
+..+.. ..+.+ ++|+|++++|++++.||.|++||.. +.+..+.+| ...|.++.+++++|++++.||.
T Consensus 238 ~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~~ 316 (342)
T 1yfq_A 238 FRCHRLNLKDTNLAYPVNS-IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTF 316 (342)
T ss_dssp EECCCCCTTCCSSCCCEEE-EEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHH
T ss_pred eecccccccccccceeEEE-EEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCCcc
Confidence 776632 24444 6999999999999999999999965 467778888 9999999999999999999998
Q ss_pred EEEEe
Q 008820 486 VSVQE 490 (552)
Q Consensus 486 i~iwd 490 (552)
.+.|.
T Consensus 317 ~~~~~ 321 (342)
T 1yfq_A 317 KTNAA 321 (342)
T ss_dssp HHCSS
T ss_pred ccccc
Confidence 55554
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=246.65 Aligned_cols=269 Identities=15% Similarity=0.159 Sum_probs=198.8
Q ss_pred ccccceeeec-CcceEEEeeCCCeEEEEEe-----------ecCccceEEEEEc---CCEEEEEeCCCcEEEEeCCCCeE
Q 008820 220 ADIDQARAAG-GVKDLVNGLSKGNVKFKDL-----------QGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFSH 284 (552)
Q Consensus 220 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l-----------~~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~~~~ 284 (552)
..+.++.+.+ ....++++..++.+.+|++ .+|.++|++++|+ +++|+||+.||+|++||++++..
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~ 199 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL 199 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce
Confidence 3477888887 4567889999999999973 4799999999997 78999999999999999987655
Q ss_pred EEEEeC--CCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCC-EEEEeeCC
Q 008820 285 VHTFKG--HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGD 361 (552)
Q Consensus 285 ~~~~~~--h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~d 361 (552)
...... +...+.+++|+|++. ++++|+.||.|++||++.. .+..+..+... ....+++|+++ ++++|+.|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~----~~~~~~~h~~~--v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 200 RVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGK----ELWNLRMHKKK--VTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp EEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSC----BCCCSBCCSSC--EEEEEECTTCSSEEEEEETT
T ss_pred eEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcc----eeEEEecccce--EEeeeecCCCceEEEEecCc
Confidence 443333 344678999999654 8899999999999998742 22333333321 22346777766 88899999
Q ss_pred CcEEEEECCCCceeEE---ecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCc----eEEEEEE
Q 008820 362 RTIKAWSLLDGTLSCT---MSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGA----VSSVLSL 432 (552)
Q Consensus 362 g~i~iwd~~~~~~~~~---~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~ 432 (552)
+.|++||+++.+.... ..+|...|++++|+ +.+|++++.||+|++||+++++....+..+.... ......+
T Consensus 273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW 352 (435)
T ss_dssp SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEE
T ss_pred ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEE
Confidence 9999999988765443 35799999999999 3499999999999999999998877765443211 0111356
Q ss_pred cCCCCEEEEEE------------CCCcEEEEeCC--cceeee-ecccceEEEE---EecCCEEEEEeCCCeEEEEecCCC
Q 008820 433 TAVQHTLVVSH------------ESGSIKVWRND--KFMKSM-QTHKGSVFAV---FLEGKWLFTGGWDKTVSVQELAGD 494 (552)
Q Consensus 433 s~~~~~l~~g~------------~dg~i~iwd~~--~~~~~~-~~h~~~v~~v---~~~~~~l~sgs~dg~i~iwd~~~~ 494 (552)
++++..++++. .++.|++||.. +.+..+ .+|...|.++ +++|.+|++|+ |+.|+|||++++
T Consensus 353 ~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 353 HPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp CSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred cCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 67776666654 23579999965 344444 4677777665 34899999876 889999999887
Q ss_pred ee
Q 008820 495 EF 496 (552)
Q Consensus 495 ~~ 496 (552)
+.
T Consensus 432 k~ 433 (435)
T 4e54_B 432 RT 433 (435)
T ss_dssp --
T ss_pred ee
Confidence 54
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-27 Score=231.25 Aligned_cols=244 Identities=18% Similarity=0.177 Sum_probs=188.8
Q ss_pred EEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCC-ccccccccCCCceeeeEEEEee--CCCEEEEeeCCC
Q 008820 286 HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH-EPLKKWNEEKDWRYSGIHALTT--SGRYLYTGSGDR 362 (552)
Q Consensus 286 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~l~sgs~dg 362 (552)
..+.+|.+.|++++|+|++. +|++|+.||.|++||+.+.... .....+..+.. . ....++++ ++++|++|+.||
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~-v~~~~~~~~~d~~~l~s~~~dg 81 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDS-S-IVAIDWASPEYGRIIASASYDK 81 (351)
T ss_dssp CEECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEEEEEEECCSS-C-EEEEEECCGGGCSEEEEEETTS
T ss_pred ccCcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcceecceeccCCC-c-EEEEEEcCCCCCCEEEEEcCCC
Confidence 34678999999999999655 7899999999999999865433 22233333332 1 22345666 588999999999
Q ss_pred cEEEEECCCC---------ceeEEecCCCCCeEEEEEe-C--C-EEEEEeCCCcEEEEECCCCceeEEEec---------
Q 008820 363 TIKAWSLLDG---------TLSCTMSGHKSAVSTLAVC-N--G-VLYSGSRDGTIRLWSLSDHSLLTVLEE--------- 420 (552)
Q Consensus 363 ~i~iwd~~~~---------~~~~~~~~h~~~v~~l~~~-~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~~--------- 420 (552)
.|++||++++ +.+..+..|...|.+++|+ + + ++++++.||.|++||+++++.+..+..
T Consensus 82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI 161 (351)
T ss_dssp CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence 9999999887 5678888999999999999 3 4 899999999999999998875443321
Q ss_pred ---CCCCceEEEEEEcCC---CCEEEEEECCCcEEEEeCCc----ceeeeecccceEEEEEe--cC----CEEEEEeCCC
Q 008820 421 ---DSSGAVSSVLSLTAV---QHTLVVSHESGSIKVWRNDK----FMKSMQTHKGSVFAVFL--EG----KWLFTGGWDK 484 (552)
Q Consensus 421 ---~~~~~~~~~~~~s~~---~~~l~~g~~dg~i~iwd~~~----~~~~~~~h~~~v~~v~~--~~----~~l~sgs~dg 484 (552)
.+...+.+ +.++|+ +..+++++.++.+.+|+... ....+.+|...|.++.| ++ ++|++|+.||
T Consensus 162 ~~~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg 240 (351)
T 3f3f_A 162 PPANHLQSDFC-LSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG 240 (351)
T ss_dssp CCSSCSCCCEE-EEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred ccCCcccceeE-EEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence 22333444 689987 89999999999998887442 36677889999999988 55 7999999999
Q ss_pred eEEEEecCCCe----------------------------------------------eeeeeccCCCcccCcceEEEEEe
Q 008820 485 TVSVQELAGDE----------------------------------------------FEEDVIPTGAIPCGSVITALLYW 518 (552)
Q Consensus 485 ~i~iwd~~~~~----------------------------------------------~~~~~~~~~~~~~~~~v~~l~~~ 518 (552)
.|++||+.++. ...... .+...|++++|+
T Consensus 241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~s 315 (351)
T 3f3f_A 241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-----DHNGEVWSVSWN 315 (351)
T ss_dssp CEEEEEEEECC---------------------------------------CCSEEEEEEEEEC-----TTSSCEEEEEEC
T ss_pred eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe-----cccccEEEEEEc
Confidence 99999997641 111111 236679999999
Q ss_pred CC--eEEEEeCCCeEEEEEecC
Q 008820 519 QG--KLFVGCADRTVKIALCNR 538 (552)
Q Consensus 519 ~~--~l~s~s~Dg~v~iw~~~~ 538 (552)
++ .|++|+.||.|++|+++.
T Consensus 316 ~~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 316 LTGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp SSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCEEEEecCCCcEEEEecCc
Confidence 53 599999999999999984
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-27 Score=233.85 Aligned_cols=265 Identities=13% Similarity=0.042 Sum_probs=194.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCC------CCccccccc
Q 008820 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPL------GHEPLKKWN 335 (552)
Q Consensus 262 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~ 335 (552)
+.++++|+.||+|++||+.+++.+..+. ...|.++.|+|. +++++.|++|++|+..... ....+..+.
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence 7899999999999999999999888887 467888888876 8999999999999876321 111122222
Q ss_pred cCCCceeeeEEEEee--CCCEEEEeeCCCcEEEEECCCCceeEEec-CCCCCeEEEEEe--CCEEEEEeCCCcEEEEECC
Q 008820 336 EEKDWRYSGIHALTT--SGRYLYTGSGDRTIKAWSLLDGTLSCTMS-GHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLS 410 (552)
Q Consensus 336 ~~~~~~~~~~~~~~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~ 410 (552)
..+.. .....+++| +++++++|+.||+|++||+++++...... .|...|++++|+ +.++++|+.||.|++||++
T Consensus 122 ~~~~~-~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~ 200 (343)
T 3lrv_A 122 VDSAN-EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS 200 (343)
T ss_dssp CCCSS-CEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS
T ss_pred cCCCC-CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 11111 123346777 88899999999999999999999877664 455689999999 3499999999999999999
Q ss_pred CCcee-EEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcc--eeeee---cccceEE--EEEe--cCCEEEEE
Q 008820 411 DHSLL-TVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF--MKSMQ---THKGSVF--AVFL--EGKWLFTG 480 (552)
Q Consensus 411 ~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~--~~~~~---~h~~~v~--~v~~--~~~~l~sg 480 (552)
+++.+ ..+...|.+.+.+ ++|+|++.+|++++ |+.|++||+++. ...+. .|...+. +++| ++++|+++
T Consensus 201 ~~~~~~~~~~~~h~~~v~~-l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 278 (343)
T 3lrv_A 201 SPDQASSRFPVDEEAKIKE-VKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAY 278 (343)
T ss_dssp CTTSCCEECCCCTTSCEEE-EEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEE
T ss_pred CCCCCccEEeccCCCCEEE-EEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEe
Confidence 99987 7777634566666 69999999999999 459999997653 23333 2334432 3554 89999999
Q ss_pred eC-CCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-----CeEEEEeCCCeEEEEEecCCcceeE
Q 008820 481 GW-DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-----GKLFVGCADRTVKIALCNRQIPEIF 544 (552)
Q Consensus 481 s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-----~~l~s~s~Dg~v~iw~~~~~~~~~~ 544 (552)
+. |+.|++|++......... ..+..+.|++ ..+++++.||.++++-.....-.+.
T Consensus 279 s~~d~~i~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~i~ 339 (343)
T 3lrv_A 279 SNESNSLTIYKFDKKTKNWTK---------DEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSFNIV 339 (343)
T ss_dssp ETTTTEEEEEEECTTTCSEEE---------EEEEECCC----CCCCEEEEEEETTEEEEEEECSSEEEEE
T ss_pred cCCCCcEEEEEEcccccceEe---------cCceeEecCccccccceeEEEecCCceEEEEecCCeEeEE
Confidence 98 999999999765433221 3456666664 3488999999999987764443333
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=262.92 Aligned_cols=245 Identities=17% Similarity=0.228 Sum_probs=189.9
Q ss_pred EEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCC--CCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEe
Q 008820 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK--DFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (552)
Q Consensus 246 ~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~--~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 321 (552)
..+.+|.++|++++|+ +++|++|+.||+|++||+. +++.+..+.+|.+.|.+++|+|+.
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~----------------- 65 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK----------------- 65 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT-----------------
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC-----------------
Confidence 3578999999999999 8999999999999999998 567788899999999999998752
Q ss_pred CCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCc--eeEEecCCCCCeEEEEEe-C--C-EE
Q 008820 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT--LSCTMSGHKSAVSTLAVC-N--G-VL 395 (552)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~-~--~-~l 395 (552)
++++|++|+.||.|++||+.+++ .+..+.+|...|++++|+ + + .+
T Consensus 66 -----------------------------~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l 116 (753)
T 3jro_A 66 -----------------------------FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLL 116 (753)
T ss_dssp -----------------------------SCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred -----------------------------CCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEE
Confidence 12345555556666666665554 566778899999999999 3 3 99
Q ss_pred EEEeCCCcEEEEECCCCce--eEEEecCCCCceEEEEEEcC-------------CCCEEEEEECCCcEEEEeCC------
Q 008820 396 YSGSRDGTIRLWSLSDHSL--LTVLEEDSSGAVSSVLSLTA-------------VQHTLVVSHESGSIKVWRND------ 454 (552)
Q Consensus 396 ~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~s~-------------~~~~l~~g~~dg~i~iwd~~------ 454 (552)
++|+.||.|++||++++.. ...+..+ ...+.+ +.|+| ++.++++|+.||.|++||.+
T Consensus 117 ~sgs~dg~I~vwdl~~~~~~~~~~~~~~-~~~v~~-l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~ 194 (753)
T 3jro_A 117 LVASSDGKVSVVEFKENGTTSPIIIDAH-AIGVNS-ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 194 (753)
T ss_dssp EEEETTSEEEEEECCSSSCCCCEEEECC-SSCEEE-EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEE
T ss_pred EEEeCCCcEEEEEeecCCCcceeEeecC-CCceEE-EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccc
Confidence 9999999999999988743 3344433 444555 68888 58999999999999999964
Q ss_pred cceeeeecccceEEEEEe--c---CCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEEeC
Q 008820 455 KFMKSMQTHKGSVFAVFL--E---GKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCA 527 (552)
Q Consensus 455 ~~~~~~~~h~~~v~~v~~--~---~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~ 527 (552)
.....+.+|...|.++.| + +.+|++|+.||.|++||+.++.............+...|.+++|+++ .+++|+.
T Consensus 195 ~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~ 274 (753)
T 3jro_A 195 VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 274 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS
T ss_pred eeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC
Confidence 345677889999999987 5 88999999999999999987643222222222234677999999953 5999999
Q ss_pred CCeEEEEEecC
Q 008820 528 DRTVKIALCNR 538 (552)
Q Consensus 528 Dg~v~iw~~~~ 538 (552)
||.|++|+++.
T Consensus 275 Dg~I~vwd~~~ 285 (753)
T 3jro_A 275 DNKVTLWKENL 285 (753)
T ss_dssp SSCEECCBCCS
T ss_pred CCEEEEEecCC
Confidence 99999999973
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=239.35 Aligned_cols=255 Identities=18% Similarity=0.211 Sum_probs=200.4
Q ss_pred eeCCCeEEEEE-------------eecCccceEEEEEc---CCEEEEEeCCCcEEEEeCCCC-------eEEEEEeCCCC
Q 008820 237 GLSKGNVKFKD-------------LQGHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDF-------SHVHTFKGHDH 293 (552)
Q Consensus 237 ~~~~~~~~~~~-------------l~~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~~-------~~~~~~~~h~~ 293 (552)
+..++.+.+|+ +.+|.+.|++++|+ +++|++|+.||+|++||+.++ +.+..+.+|..
T Consensus 53 ~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~ 132 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132 (402)
T ss_dssp CSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSS
T ss_pred EcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCC
Confidence 45667777776 45799999999997 789999999999999999987 66888999999
Q ss_pred CeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCc
Q 008820 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT 373 (552)
Q Consensus 294 ~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~ 373 (552)
.|.+++|+|++..++++++.||.|++||++++.....+.. ..+.. .....++++++++|++++.||.|++||+++++
T Consensus 133 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 209 (402)
T 2aq5_A 133 RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP-DVHPD--TIYSVDWSRDGALICTSCRDKRVRVIEPRKGT 209 (402)
T ss_dssp CEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT-TTCCS--CEEEEEECTTSSCEEEEETTSEEEEEETTTTE
T ss_pred eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec-CCCCC--ceEEEEECCCCCEEEEEecCCcEEEEeCCCCc
Confidence 9999999998878999999999999999987643332210 22221 22345778889999999999999999999999
Q ss_pred eeEEe-cCCCCC-eEEEEEe-CC-EEEEE---eCCCcEEEEECCCCce-eEEEecCCCCceEEEEEEcCCCCEEEE-EEC
Q 008820 374 LSCTM-SGHKSA-VSTLAVC-NG-VLYSG---SRDGTIRLWSLSDHSL-LTVLEEDSSGAVSSVLSLTAVQHTLVV-SHE 444 (552)
Q Consensus 374 ~~~~~-~~h~~~-v~~l~~~-~~-~l~s~---~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~-g~~ 444 (552)
.+..+ .+|.+. +.++.|+ ++ ++++| +.|+.|++||+++++. +......+...+.. ++|+|+++++++ |+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~g~~ 288 (402)
T 2aq5_A 210 VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLL-PFFDPDTNIVYLCGKG 288 (402)
T ss_dssp EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEE-EEEETTTTEEEEEETT
T ss_pred eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeE-EEEcCCCCEEEEEEcC
Confidence 99998 788876 8999999 44 67777 6899999999998764 44444444444554 699999999975 557
Q ss_pred CCcEEEEeCCcc---eeeeecc--cceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeee
Q 008820 445 SGSIKVWRNDKF---MKSMQTH--KGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFE 497 (552)
Q Consensus 445 dg~i~iwd~~~~---~~~~~~h--~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~ 497 (552)
||.|++||.... +..+..| ...+.++.| ++.++++ .++.+++|++.++.+.
T Consensus 289 dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 289 DSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp CSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred CCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence 999999996532 4455544 588888887 6666654 5679999999876553
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-26 Score=218.53 Aligned_cols=267 Identities=13% Similarity=0.105 Sum_probs=185.0
Q ss_pred EEEEEeCCCcEEEEeCCCC---eEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcE-EEEeCCCCCCCccccccccCCC
Q 008820 264 FLFSSSFDKSIHVWSLKDF---SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGI-FVWSFSFPLGHEPLKKWNEEKD 339 (552)
Q Consensus 264 ~l~s~s~dg~I~iwd~~~~---~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i-~vwd~~~~~~~~~~~~~~~~~~ 339 (552)
.+++++.+ +|++|+..++ +.++++..|..+|..+++.|+..+++..+-.+=.+ .++-+........+...... .
T Consensus 56 ~~~~~~~~-~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s-~ 133 (356)
T 2w18_A 56 CIITACED-VVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLK-S 133 (356)
T ss_dssp EEEEEESS-EEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEE-E
T ss_pred EEEEeccc-eEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEe-C
Confidence 56777755 8999999998 89999999999999999999766554333221111 12222111110000000000 0
Q ss_pred ceeeeEEEEeeCCCEEEEee--CCCcEEEEEC-CCCceeEEecCCCCCeEEEEEeC-----CEEEEEeCCCcEEEEECCC
Q 008820 340 WRYSGIHALTTSGRYLYTGS--GDRTIKAWSL-LDGTLSCTMSGHKSAVSTLAVCN-----GVLYSGSRDGTIRLWSLSD 411 (552)
Q Consensus 340 ~~~~~~~~~~~~~~~l~sgs--~dg~i~iwd~-~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~~~dg~i~iwd~~~ 411 (552)
.+...+..+ ++++.+.+++ .|+.|++|++ .+++.+..+.+|...++.++|+. ..|++++.|++|++||+++
T Consensus 134 g~~~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T 212 (356)
T 2w18_A 134 GNIKAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT 212 (356)
T ss_dssp EEEEEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT
T ss_pred CCeEEEEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC
Confidence 012223343 3455555533 5999999999 55888888889999998888882 4999999999999999999
Q ss_pred CceeEEEecCCCC-ceEEEEEEcCCCCEE------------EEEECCCcEEEEeCCc--ceeee-----ecccceEEEEE
Q 008820 412 HSLLTVLEEDSSG-AVSSVLSLTAVQHTL------------VVSHESGSIKVWRNDK--FMKSM-----QTHKGSVFAVF 471 (552)
Q Consensus 412 ~~~~~~~~~~~~~-~~~~~~~~s~~~~~l------------~~g~~dg~i~iwd~~~--~~~~~-----~~h~~~v~~v~ 471 (552)
+++++++..++.. .....++|+|++.++ ++|+.|++|++||..+ .+..+ .+|...+.+.+
T Consensus 213 Gk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~ 292 (356)
T 2w18_A 213 GQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGD 292 (356)
T ss_dssp CCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEE
T ss_pred CcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccc
Confidence 9999999865321 122235899999876 5688899999999654 33333 46777777777
Q ss_pred ecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEEeCCCeEEEEEec
Q 008820 472 LEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCADRTVKIALCN 537 (552)
Q Consensus 472 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~Dg~v~iw~~~ 537 (552)
+++.++++|+.|++|+|||+.++++...+..+. ...+.+++|+|+ .|++|+.|++|+|||+.
T Consensus 293 ~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~----~~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 293 VKDHCAAAILTSGTIAIWDLLLGQCTALLPPVS----DQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp EETTEEEEEETTSCEEEEETTTCSEEEEECCC------CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred cCCCEEEEEcCCCcEEEEECCCCcEEEEecCCC----CCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 789999999999999999999998887765431 233556899964 59999999999999963
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=240.73 Aligned_cols=255 Identities=11% Similarity=0.067 Sum_probs=198.1
Q ss_pred cCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCC
Q 008820 250 GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLG 327 (552)
Q Consensus 250 ~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 327 (552)
.-..+|.+++|+ |+++||++.|++|+ |...++.+ .+|...|.+++|+|++ .++.+.+|+.+ .
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg--------~~~~~~~~~~~---~ 76 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE--------FENKLDFELAQ---Q 76 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC--------CCCTTTTSCCC---S
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC--------CcceEEEEeCC---C
Confidence 345789999999 99999999999999 76666544 7999999999999977 45555555433 2
Q ss_pred CccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCC-----CeEEEEEe--CCEEEEEeC
Q 008820 328 HEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKS-----AVSTLAVC--NGVLYSGSR 400 (552)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~-----~v~~l~~~--~~~l~s~~~ 400 (552)
...+.. . + . ......+++|+|+.|++++.||.|++||.++ ++..+. |.. .|.+++|+ +.+|++|+.
T Consensus 77 ~~~~~~-~-~-~-~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~ 149 (588)
T 2j04_A 77 NGLLNS-Q-P-V-CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE 149 (588)
T ss_dssp SCSSTT-S-C-S-CCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET
T ss_pred ceEeec-C-C-C-CcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC
Confidence 222211 1 1 1 3334568999999999999999999999544 666667 665 49999999 349999999
Q ss_pred CCcEEEEECCCCce-------eEEEe---cCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcce-----eee-eccc
Q 008820 401 DGTIRLWSLSDHSL-------LTVLE---EDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFM-----KSM-QTHK 464 (552)
Q Consensus 401 dg~i~iwd~~~~~~-------~~~~~---~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~-----~~~-~~h~ 464 (552)
||+|++||+.++.. +.++. ..|...+.+ ++|+|+| +++++.|++|++||..... +.+ .+|.
T Consensus 150 DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~s-VawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~ 226 (588)
T 2j04_A 150 DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTH-IVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASR 226 (588)
T ss_dssp TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEE-EEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCS
T ss_pred CCEEEEEECCCCccccccceeeeeeecccccccccEEE-EEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccccc
Confidence 99999999998863 56664 223456666 6999999 8889999999999965322 346 4788
Q ss_pred ceEEEEEecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEE--eCCe--EEEEeCCCeEEEEEec
Q 008820 465 GSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY--WQGK--LFVGCADRTVKIALCN 537 (552)
Q Consensus 465 ~~v~~v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~--l~s~s~Dg~v~iw~~~ 537 (552)
..|.+++|.|+.|++++ +++|++||+.+++....... +...|..+++ +++. +++++.||+ ++|..+
T Consensus 227 ~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~~~~~~g-----h~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 227 RKITDLKIVDYKVVLTC-PGYVHKIDLKNYSISSLKTG-----SLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp SCCCCEEEETTEEEEEC-SSEEEEEETTTTEEEEEECS-----CCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred CcEEEEEEECCEEEEEe-CCeEEEEECCCCeEEEEEcC-----CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 99999999778999998 69999999998877443322 2677999999 8653 888999999 999986
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-26 Score=225.75 Aligned_cols=266 Identities=16% Similarity=0.183 Sum_probs=211.6
Q ss_pred CCCCccccceeeecC---cceEEEeeCCCeEEEEEe-----------ecCccceEEEEEc--CCEEEEEeCCCcEEEEeC
Q 008820 216 NSDGADIDQARAAGG---VKDLVNGLSKGNVKFKDL-----------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSL 279 (552)
Q Consensus 216 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l-----------~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~ 279 (552)
..+...+..+.+++. +..++++..++.+.+|++ .+|.+.|++++|+ +++|++++.||.|++||+
T Consensus 36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~ 115 (368)
T 3mmy_A 36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115 (368)
T ss_dssp SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEc
Confidence 445566889999988 589999999999998874 4689999999999 889999999999999999
Q ss_pred CCCeEEEEEeCCCCCeEEEEE--ecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEE
Q 008820 280 KDFSHVHTFKGHDHKVMAVVY--VDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYT 357 (552)
Q Consensus 280 ~~~~~~~~~~~h~~~v~~v~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 357 (552)
.+++.+. +..|...|.+++| +++ ..++++++.||.|++||+++++....+. .+. .+.++.+.+..+++
T Consensus 116 ~~~~~~~-~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~ 185 (368)
T 3mmy_A 116 SSNQAIQ-IAQHDAPVKTIHWIKAPN-YSCVMTGSWDKTLKFWDTRSSNPMMVLQ---LPE-----RCYCADVIYPMAVV 185 (368)
T ss_dssp TTTEEEE-EEECSSCEEEEEEEECSS-CEEEEEEETTSEEEEECSSCSSCSEEEE---CSS-----CEEEEEEETTEEEE
T ss_pred CCCCcee-eccccCceEEEEEEeCCC-CCEEEEccCCCcEEEEECCCCcEEEEEe---cCC-----CceEEEecCCeeEE
Confidence 9998776 5669999999999 554 4578999999999999998765443333 221 24566667788999
Q ss_pred eeCCCcEEEEECCCCceeEEe--cCCCCCeEEEEEe--CC----EEEEEeCCCcEEEEECCCC---ceeEEEecCCCC--
Q 008820 358 GSGDRTIKAWSLLDGTLSCTM--SGHKSAVSTLAVC--NG----VLYSGSRDGTIRLWSLSDH---SLLTVLEEDSSG-- 424 (552)
Q Consensus 358 gs~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~~--~~----~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~-- 424 (552)
++.++.+++||++........ ..+...+.++.+. .. .+++++.||.|++||++.. .....+..+...
T Consensus 186 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 265 (368)
T 3mmy_A 186 ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGT 265 (368)
T ss_dssp EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC--
T ss_pred EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccc
Confidence 999999999999876544333 2244455666655 22 3999999999999999987 556666655321
Q ss_pred ---------ceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEec
Q 008820 425 ---------AVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQEL 491 (552)
Q Consensus 425 ---------~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~ 491 (552)
.+.+ ++|+|++++|++|+.||.|++||+. +.+..+..|...|.++.| ++++|++++.|+..+.|++
T Consensus 266 ~~~~~~~~~~v~~-~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 266 NTSAPQDIYAVNG-IAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp --CCCEEECCEEE-EEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred cccccccccceEE-EEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccc
Confidence 3444 6999999999999999999999965 467788899999999987 8999999999986666554
Q ss_pred C
Q 008820 492 A 492 (552)
Q Consensus 492 ~ 492 (552)
.
T Consensus 345 ~ 345 (368)
T 3mmy_A 345 Y 345 (368)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=236.46 Aligned_cols=268 Identities=9% Similarity=0.118 Sum_probs=202.7
Q ss_pred CccccceeeecCcceEEEeeCCCeEEEEEe--------------------ecCc------------cceEEEEEc--C--
Q 008820 219 GADIDQARAAGGVKDLVNGLSKGNVKFKDL--------------------QGHR------------DCVTGLAVG--G-- 262 (552)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------------------~~H~------------~~V~~l~~s--~-- 262 (552)
...+..+.+++.+..++++..++.+.+|++ .+|. +.|++++|+ +
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 355888999999999999999999998874 4687 889999999 4
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEE---------------------------------------EE-EeCCCCCeEEEEEec
Q 008820 263 GFLFSSSFDKSIHVWSLKDFSHV---------------------------------------HT-FKGHDHKVMAVVYVD 302 (552)
Q Consensus 263 ~~l~s~s~dg~I~iwd~~~~~~~---------------------------------------~~-~~~h~~~v~~v~~~~ 302 (552)
.+|++++.|++|++||+.+++.. .. ..+|...|.+++|+|
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 187 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS 187 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence 79999999999999998764432 12 367999999999999
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCCCCcccc-----ccccCCCceeeeEEEEeeCC-CEEEEeeCCCcEEEEECCCCce--
Q 008820 303 EDQPLCISGDSGGGIFVWSFSFPLGHEPLK-----KWNEEKDWRYSGIHALTTSG-RYLYTGSGDRTIKAWSLLDGTL-- 374 (552)
Q Consensus 303 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~l~sgs~dg~i~iwd~~~~~~-- 374 (552)
++. ++++| .|+.|++||++......... .+..+. ......+++|++ ++|++|+.||.|++||+++++.
T Consensus 188 ~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 188 DYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELT--EVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp TSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCC--CCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred CCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccC--cceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 655 77788 79999999998432111100 111222 122345778887 8999999999999999999887
Q ss_pred --eEEecCCCC------------CeEEEEEe-C-CEEEEEeCCCcEEEEECCC-CceeEEEecCCCCce-----------
Q 008820 375 --SCTMSGHKS------------AVSTLAVC-N-GVLYSGSRDGTIRLWSLSD-HSLLTVLEEDSSGAV----------- 426 (552)
Q Consensus 375 --~~~~~~h~~------------~v~~l~~~-~-~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~----------- 426 (552)
+..+..|.. .|.+++|+ + .+|++++. +.|++||+++ ++++..+..+.....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 788888876 89999999 3 38888888 9999999997 888888876531000
Q ss_pred --EEEEEEcCCCCEEEEEECCCcEEEEeCCcc-eeeeec---------------------------------ccceEEEE
Q 008820 427 --SSVLSLTAVQHTLVVSHESGSIKVWRNDKF-MKSMQT---------------------------------HKGSVFAV 470 (552)
Q Consensus 427 --~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~---------------------------------h~~~v~~v 470 (552)
...++|+|++++|++|+.||.|++||.... ...+.. +...|..+
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 011589999999999999999999996532 112222 23456666
Q ss_pred Ee--cCCEEEEEeCCCeEEEEecC
Q 008820 471 FL--EGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 471 ~~--~~~~l~sgs~dg~i~iwd~~ 492 (552)
+| ++.+|++++.++ +++|.-+
T Consensus 423 ~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 423 AWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp EECSSSSEEEEECSSC-EEEEECC
T ss_pred EECCCCCEEEEEecce-eeeeccc
Confidence 65 899999998775 7777643
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-25 Score=223.61 Aligned_cols=233 Identities=21% Similarity=0.289 Sum_probs=188.0
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEEe-----------ecCccceEEEEEc----CCEEEEEeCCCcEEEEeCCCC
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKDL-----------QGHRDCVTGLAVG----GGFLFSSSFDKSIHVWSLKDF 282 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~H~~~V~~l~~s----~~~l~s~s~dg~I~iwd~~~~ 282 (552)
+...+..+.+++.+..++++..++.+.+|++ .+|.+.|++++|+ +++|++|+.||.|++||+.++
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 89 (379)
T 3jrp_A 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG 89 (379)
T ss_dssp CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT
T ss_pred CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC
Confidence 3445888889999999999999999999875 4799999999997 799999999999999999998
Q ss_pred e--EEEEEeCCCCCeEEEEEecCC-CCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEee---------
Q 008820 283 S--HVHTFKGHDHKVMAVVYVDED-QPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT--------- 350 (552)
Q Consensus 283 ~--~~~~~~~h~~~v~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 350 (552)
+ .+..+..|...|.+++|+|+. ..++++++.|+.|++||+.......... ...+.. .....+++|
T Consensus 90 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~~~~~~ 166 (379)
T 3jrp_A 90 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII-IDAHAI--GVNSASWAPATIEEDGEH 166 (379)
T ss_dssp EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE-EECCTT--CEEEEEECCCC-------
T ss_pred ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE-ecCCCC--ceEEEEEcCccccccccc
Confidence 7 778888999999999999973 5688999999999999998764333222 222221 122346666
Q ss_pred ----CCCEEEEeeCCCcEEEEECCCCc----eeEEecCCCCCeEEEEEe-C---C-EEEEEeCCCcEEEEECCCCce---
Q 008820 351 ----SGRYLYTGSGDRTIKAWSLLDGT----LSCTMSGHKSAVSTLAVC-N---G-VLYSGSRDGTIRLWSLSDHSL--- 414 (552)
Q Consensus 351 ----~~~~l~sgs~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~~-~---~-~l~s~~~dg~i~iwd~~~~~~--- 414 (552)
+++.+++|+.||.|++||+++++ ....+.+|...|.+++|+ + + +|++++.||.|++||++++..
T Consensus 167 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 246 (379)
T 3jrp_A 167 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 246 (379)
T ss_dssp ---CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCE
T ss_pred cCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccce
Confidence 58899999999999999998764 456778899999999999 4 4 899999999999999998752
Q ss_pred eEEEec-CCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 008820 415 LTVLEE-DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND 454 (552)
Q Consensus 415 ~~~~~~-~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 454 (552)
...+.. .+...+.. ++|+|++++|++++.||.|++||..
T Consensus 247 ~~~~~~~~~~~~v~~-~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 247 KTLLKEEKFPDVLWR-ASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp EEESSSSCCSSCEEE-EEECSSSCCEEEEESSSSEEEEEEE
T ss_pred eeeeccccCCCcEEE-EEEcCCCCEEEEecCCCcEEEEeCC
Confidence 222222 13344444 6999999999999999999999965
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-28 Score=242.98 Aligned_cols=250 Identities=11% Similarity=0.065 Sum_probs=190.8
Q ss_pred cccceeeecCcceEEEeeCCCeEEE----EEeecCccceEEEEEc-CCEEEEEeCCCcEEEEeCCCCeEEEEEe-CCCCC
Q 008820 221 DIDQARAAGGVKDLVNGLSKGNVKF----KDLQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFK-GHDHK 294 (552)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~H~~~V~~l~~s-~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~h~~~ 294 (552)
-+..+.++++++.+++++.|+.++- ..+.+|...|.+++|+ .. .++++.+|+. +....+. .|...
T Consensus 17 ~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg------~~~~~~~~~~---~~~~~~~~~~~~~ 87 (588)
T 2j04_A 17 WKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLE------FENKLDFELA---QQNGLLNSQPVCY 87 (588)
T ss_dssp SSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCC------CCCTTTTSCC---CSSCSSTTSCSCC
T ss_pred cEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCC------CcceEEEEeC---CCceEeecCCCCc
Confidence 4778999999999999999998861 1257999999999998 22 4555555553 3222232 46889
Q ss_pred eEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCC---ceeeeEEEEeeCCCEEEEeeCCCcEEEEECCC
Q 008820 295 VMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKD---WRYSGIHALTTSGRYLYTGSGDRTIKAWSLLD 371 (552)
Q Consensus 295 v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~ 371 (552)
|.+++|+|++. .+++++.||.|++||.+. .+.... +.. .......+|+|+|++|++|+.||+|++||+.+
T Consensus 88 V~~vawSPdG~-~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~ 160 (588)
T 2j04_A 88 PRVCKPSPIDD-WMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK 160 (588)
T ss_dssp EEEEEECSSSS-CEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC
T ss_pred EEEEEECCCCC-EEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 99999999776 669999999999999543 222222 221 01223568999999999999999999999998
Q ss_pred Cce-------eEEe----cCCCCCeEEEEEe-CCEEEEEeCCCcEEEEECCCCce---eEEEecCCCCceEEEEEEcCCC
Q 008820 372 GTL-------SCTM----SGHKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHSL---LTVLEEDSSGAVSSVLSLTAVQ 436 (552)
Q Consensus 372 ~~~-------~~~~----~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~s~~~ 436 (552)
+.. +.++ .+|...|.+++|+ ++ +++++.|++|++||+.+++. ..++...+...+.. ++|+ +
T Consensus 161 ~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s-vaFs--g 236 (588)
T 2j04_A 161 NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD-LKIV--D 236 (588)
T ss_dssp CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC-EEEE--T
T ss_pred CccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEE-EEEE--C
Confidence 753 5666 6788999999999 56 99999999999999988774 35564344455555 5787 6
Q ss_pred CEEEEEECCCcEEEEeCCccee-eee-cccceEEEEEe----cCCEEEEEeCCCeEEEEecC
Q 008820 437 HTLVVSHESGSIKVWRNDKFMK-SMQ-THKGSVFAVFL----EGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 437 ~~l~~g~~dg~i~iwd~~~~~~-~~~-~h~~~v~~v~~----~~~~l~sgs~dg~i~iwd~~ 492 (552)
..+++++ +++|++||...... .+. +|...+..+.+ ++..+++++.||+ ++|...
T Consensus 237 ~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 237 YKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp TEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred CEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 8898887 69999999764333 444 89999987776 6778999999999 999874
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-25 Score=225.14 Aligned_cols=238 Identities=15% Similarity=0.117 Sum_probs=188.6
Q ss_pred cCccceEEEEEc--CCEE-EEEeCCCcEEEEeCC--CCeEEEEEe--CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q 008820 250 GHRDCVTGLAVG--GGFL-FSSSFDKSIHVWSLK--DFSHVHTFK--GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (552)
Q Consensus 250 ~H~~~V~~l~~s--~~~l-~s~s~dg~I~iwd~~--~~~~~~~~~--~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 322 (552)
+|.+.|++++|+ +++| ++|+.||+|++||+. +++.+..+. .|...|.+++|+|++. +|++|+.||.|++|++
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT-TVIIADKFGDVYSIDI 178 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS-EEEEEETTSEEEEEET
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC-EEEEEeCCCcEEEEec
Confidence 455579999999 7885 899999999999999 888888886 5778999999999665 7789999999999999
Q ss_pred CCCCCCc-cccccccCCCceeeeEEEEeeC---CCEEEEeeCCCcEEEEECCCCceeEE-ecCCCCCeEEEEEe-CCEEE
Q 008820 323 SFPLGHE-PLKKWNEEKDWRYSGIHALTTS---GRYLYTGSGDRTIKAWSLLDGTLSCT-MSGHKSAVSTLAVC-NGVLY 396 (552)
Q Consensus 323 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~l~sgs~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~-~~~l~ 396 (552)
.+..... ....+..+.. .....+++|+ +++|++|+.|+.|++||+++++.+.. +.+|...|++++|+ +.+|+
T Consensus 179 ~~~~~~~~~~~~~~~h~~--~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~ 256 (450)
T 2vdu_B 179 NSIPEEKFTQEPILGHVS--MLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLL 256 (450)
T ss_dssp TSCCCSSCCCCCSEECSS--CEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEEE
T ss_pred CCcccccccceeeecccC--ceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEEE
Confidence 8766544 3333333332 2234578898 88999999999999999999998887 56899999999998 55999
Q ss_pred EEeCCCcEEEEECCCCceeEEEecCC------------------------CCceEEEEEEcCCCCEEEEEE-CCCcEEEE
Q 008820 397 SGSRDGTIRLWSLSDHSLLTVLEEDS------------------------SGAVSSVLSLTAVQHTLVVSH-ESGSIKVW 451 (552)
Q Consensus 397 s~~~dg~i~iwd~~~~~~~~~~~~~~------------------------~~~~~~~~~~s~~~~~l~~g~-~dg~i~iw 451 (552)
+++.|++|++||+++++.+..+..+. ...+ ..++++|+++++++++ .|+.|++|
T Consensus 257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~i~~~~~~~~l~~~~~~d~~i~iw 335 (450)
T 2vdu_B 257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV-SKIIKSKNLPFVAFFVEATKCIIIL 335 (450)
T ss_dssp EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCE-EEEEECSSSSEEEEEETTCSEEEEE
T ss_pred EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEE-EEEEEeCCCCEEEEEECCCCeEEEE
Confidence 99999999999999999888876321 1223 3468999999999999 89999999
Q ss_pred eC--C-----cceeeeecccceEEEEEec-CCEEEEEeC-------CCeEEEEecC
Q 008820 452 RN--D-----KFMKSMQTHKGSVFAVFLE-GKWLFTGGW-------DKTVSVQELA 492 (552)
Q Consensus 452 d~--~-----~~~~~~~~h~~~v~~v~~~-~~~l~sgs~-------dg~i~iwd~~ 492 (552)
|+ . +.+..+..| ..+.++.|. +..+++.+. +..|.+|.+.
T Consensus 336 ~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 336 EMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 98 2 245566777 889999884 334444432 4558888764
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-25 Score=218.35 Aligned_cols=268 Identities=13% Similarity=0.128 Sum_probs=206.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCcee
Q 008820 263 GFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRY 342 (552)
Q Consensus 263 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 342 (552)
..+++++.|++|++||+.+++.+..+..|. .+.+++|+|++..++++++.|+.|++||+.+++....+ ..+. .
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~---~~~~---~ 75 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV---PAGS---S 75 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE---ECSS---S
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE---ECCC---C
Confidence 467889999999999999999999998775 48999999988877789999999999999876443322 2222 2
Q ss_pred eeEEEEeeCCCEEE-EeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EE-EEEeCCCcEEEEECCCCceeEEE
Q 008820 343 SGIHALTTSGRYLY-TGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VL-YSGSRDGTIRLWSLSDHSLLTVL 418 (552)
Q Consensus 343 ~~~~~~~~~~~~l~-sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l-~s~~~dg~i~iwd~~~~~~~~~~ 418 (552)
....++++++++++ +++.++.|++||+.+++.+..+..+ ..+.+++|+ ++ .+ ++++.|+.|++||+.+++.+..+
T Consensus 76 v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 23457888998765 5556799999999999998888754 468999999 33 55 78888999999999999988888
Q ss_pred ecCCCCceEEEEEEcCCCCEE-EEEECCCcEEEEeCCc--ceeeeecccceEEEEEe--cCCEEEEEe---CCCeEEEEe
Q 008820 419 EEDSSGAVSSVLSLTAVQHTL-VVSHESGSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKWLFTGG---WDKTVSVQE 490 (552)
Q Consensus 419 ~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~iwd~~~--~~~~~~~h~~~v~~v~~--~~~~l~sgs---~dg~i~iwd 490 (552)
..+. .. ..++++|+++.+ ++++.++.|++||.+. ....+. +...+.++.+ ++++|++++ .++.|++||
T Consensus 155 ~~~~--~~-~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d 230 (391)
T 1l0q_A 155 SVGR--SP-KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230 (391)
T ss_dssp ECCS--SE-EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred ecCC--Cc-ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEE
Confidence 7642 23 347899999887 5677889999999764 333333 4566777766 788888888 689999999
Q ss_pred cCCCeeeeeeccCCCcccCcceEEEEEeC-C-eE-EEEeCCCeEEEEEecCCcceeEEEecc
Q 008820 491 LAGDEFEEDVIPTGAIPCGSVITALLYWQ-G-KL-FVGCADRTVKIALCNRQIPEIFSLLLH 549 (552)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~-~l-~s~s~Dg~v~iw~~~~~~~~~~~~~gh 549 (552)
+.+++....+.. ...+.+++|++ + .+ ++++.|+.|++||+. +...+..+..|
T Consensus 231 ~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~-~~~~~~~~~~~ 285 (391)
T 1l0q_A 231 TGTNKITARIPV------GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTA-TNTITATMAVG 285 (391)
T ss_dssp TTTTEEEEEEEC------CSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEECS
T ss_pred CCCCeEEEEEec------CCCccEEEEccCCCEEEEEcCCCCEEEEEECC-CCcEEEEEECC
Confidence 998876655443 23478899995 3 45 567889999999998 45556666554
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-25 Score=218.91 Aligned_cols=260 Identities=14% Similarity=0.188 Sum_probs=195.0
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEEee-------cCccceEEEEEc--CCEE-EEEeCCCcEEEEeCCCCeEEEE
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKDLQ-------GHRDCVTGLAVG--GGFL-FSSSFDKSIHVWSLKDFSHVHT 287 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~H~~~V~~l~~s--~~~l-~s~s~dg~I~iwd~~~~~~~~~ 287 (552)
+...+.++.+++++..++++..+ .+++|++. .+...+..+++. ++.+ ++++.|++|++||..+++.+..
T Consensus 18 h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~ 96 (355)
T 3vu4_A 18 VSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSR 96 (355)
T ss_dssp -CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEE
Confidence 34568889999999988888765 46788743 222346666766 5555 6788899999999999999998
Q ss_pred EeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCC-CCCccccccccCCCceeeeEEEEeeCCCEEEE--eeCCCcE
Q 008820 288 FKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFP-LGHEPLKKWNEEKDWRYSGIHALTTSGRYLYT--GSGDRTI 364 (552)
Q Consensus 288 ~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--gs~dg~i 364 (552)
+. |...|.+++|+++ .++++ .|+.|++||+.+. +....+.. ...+.++++ +.+++ |+.||.|
T Consensus 97 ~~-~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~~~~~~~~--------~~~~~~~s~--~~la~~sg~~~g~v 161 (355)
T 3vu4_A 97 IK-VDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWKRITDDIR--------FGGVCEFSN--GLLVYSNEFNLGQI 161 (355)
T ss_dssp EE-CSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCCBSSCCEE--------EEEEEEEET--TEEEEEESSCTTCE
T ss_pred EE-CCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCceeeEEecc--------CCceEEEEc--cEEEEeCCCcCcEE
Confidence 87 6779999999764 33333 4789999999876 33333322 234556666 55555 6899999
Q ss_pred EEEECCCCc----------------eeEEecCCCCCeEEEEEe--CCEEEEEeCCCc-EEEEECCCCceeEEEe-cCCCC
Q 008820 365 KAWSLLDGT----------------LSCTMSGHKSAVSTLAVC--NGVLYSGSRDGT-IRLWSLSDHSLLTVLE-EDSSG 424 (552)
Q Consensus 365 ~iwd~~~~~----------------~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~-i~iwd~~~~~~~~~~~-~~~~~ 424 (552)
++||+++++ .+..+.+|...|++++|+ +.+|++|+.|++ |++||+++++.+..+. ..+..
T Consensus 162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~ 241 (355)
T 3vu4_A 162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA 241 (355)
T ss_dssp EEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS
T ss_pred EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC
Confidence 999998865 277889999999999999 349999999999 9999999999999998 32556
Q ss_pred ceEEEEEEcCCCCEEEEEECCCcEEEEeCCcce----eeeec---------------------cc--ceEEEEEecCCEE
Q 008820 425 AVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFM----KSMQT---------------------HK--GSVFAVFLEGKWL 477 (552)
Q Consensus 425 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~----~~~~~---------------------h~--~~v~~v~~~~~~l 477 (552)
.+.+ ++|+|++++|++++.|++|++||+.... ..+.. +. ..+.++..+++.|
T Consensus 242 ~v~~-~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l 320 (355)
T 3vu4_A 242 DVVD-MKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLV 320 (355)
T ss_dssp CEEE-EEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEE
T ss_pred cEEE-EEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEE
Confidence 6666 6999999999999999999999975321 11100 11 1333344489999
Q ss_pred EEEeCCCeEEEEecCCC
Q 008820 478 FTGGWDKTVSVQELAGD 494 (552)
Q Consensus 478 ~sgs~dg~i~iwd~~~~ 494 (552)
++++.||.+++|++..+
T Consensus 321 ~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 321 VVWPHTRMIETFKVVFD 337 (355)
T ss_dssp EEETTTTEEEEEEEEEE
T ss_pred EEEeCCCeEEEEEEEcC
Confidence 99999999999998643
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-25 Score=227.50 Aligned_cols=257 Identities=15% Similarity=0.203 Sum_probs=191.6
Q ss_pred EEEEeCCCCeE-EEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCC-------CCccccccccCCCceeeeE
Q 008820 274 IHVWSLKDFSH-VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPL-------GHEPLKKWNEEKDWRYSGI 345 (552)
Q Consensus 274 I~iwd~~~~~~-~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~~~ 345 (552)
+..+...+++. ......|.+.|++++|+|+++.++++++.||.|++||+.... .......+..+.. ....
T Consensus 109 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~ 186 (430)
T 2xyi_A 109 FGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK--EGYG 186 (430)
T ss_dssp ---------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS--CCCC
T ss_pred cccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC--CeEE
Confidence 33343334433 244567999999999999877899999999999999998621 1222333333322 1223
Q ss_pred EEEeeCCC-EEEEeeCCCcEEEEECCCCce-------eEEecCCCCCeEEEEEeC---CEEEEEeCCCcEEEEECCCC--
Q 008820 346 HALTTSGR-YLYTGSGDRTIKAWSLLDGTL-------SCTMSGHKSAVSTLAVCN---GVLYSGSRDGTIRLWSLSDH-- 412 (552)
Q Consensus 346 ~~~~~~~~-~l~sgs~dg~i~iwd~~~~~~-------~~~~~~h~~~v~~l~~~~---~~l~s~~~dg~i~iwd~~~~-- 412 (552)
.++++++. +|++|+.||.|++||+.++.. ...+.+|...|.+++|++ .+|++++.||.|++||++++
T Consensus 187 l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~ 266 (430)
T 2xyi_A 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT 266 (430)
T ss_dssp EEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS
T ss_pred EEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC
Confidence 47788877 999999999999999987422 456778999999999983 38999999999999999987
Q ss_pred -ceeEEEecCCCCceEEEEEEcCCCC-EEEEEECCCcEEEEeCCc---ceeeeecccceEEEEEe--cC-CEEEEEeCCC
Q 008820 413 -SLLTVLEEDSSGAVSSVLSLTAVQH-TLVVSHESGSIKVWRNDK---FMKSMQTHKGSVFAVFL--EG-KWLFTGGWDK 484 (552)
Q Consensus 413 -~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iwd~~~---~~~~~~~h~~~v~~v~~--~~-~~l~sgs~dg 484 (552)
+.+..+..+ ...+.+ ++|+|++. ++++|+.||.|++||++. ++..+..|...|.++.| ++ .+|++++.||
T Consensus 267 ~~~~~~~~~~-~~~v~~-i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~ 344 (430)
T 2xyi_A 267 SKPSHTVDAH-TAEVNC-LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 344 (430)
T ss_dssp SSCSEEEECC-SSCEEE-EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred CcceeEeecC-CCCeEE-EEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC
Confidence 566677654 344554 69999887 789999999999999764 57788899999999988 55 5799999999
Q ss_pred eEEEEecCCCee------------eeeeccCCCcccCcceEEEEEeCC---eEEEEeCCCeEEEEEec
Q 008820 485 TVSVQELAGDEF------------EEDVIPTGAIPCGSVITALLYWQG---KLFVGCADRTVKIALCN 537 (552)
Q Consensus 485 ~i~iwd~~~~~~------------~~~~~~~~~~~~~~~v~~l~~~~~---~l~s~s~Dg~v~iw~~~ 537 (552)
.|++||+..... ....... .+...|.+++|+++ .+++++.||.|+||+++
T Consensus 345 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHG---GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CCEEEEGGGTTCCCCHHHHHHCCTTEEEECC---CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred cEEEEeCCCCccccCccccccCCcceEEEcC---CCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 999999976211 1111111 23667999999963 69999999999999997
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.9e-26 Score=221.91 Aligned_cols=257 Identities=11% Similarity=0.033 Sum_probs=192.7
Q ss_pred cCcceEEEeeCCCeEEEEEeecCc-------cceEEEEEcCCEEEEEeCCCcEEEEeCC---------CCeEEEEEe-CC
Q 008820 229 GGVKDLVNGLSKGNVKFKDLQGHR-------DCVTGLAVGGGFLFSSSFDKSIHVWSLK---------DFSHVHTFK-GH 291 (552)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~H~-------~~V~~l~~s~~~l~s~s~dg~I~iwd~~---------~~~~~~~~~-~h 291 (552)
.++..++++..++.+++|++.... ..|.++.++.. +++++.|++|++|+.. +++.+..+. +|
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 124 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDS 124 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCC
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCC
Confidence 456789999999999999986443 45666666645 9999999999999655 555555554 68
Q ss_pred CCCeEEEEEec--CCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEEC
Q 008820 292 DHKVMAVVYVD--EDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSL 369 (552)
Q Consensus 292 ~~~v~~v~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~ 369 (552)
.+.|.+++|+| ++. ++++++.||+|++||++++... .....+.. ......+++|++.+|++|+.||.|++||+
T Consensus 125 ~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~---~~~~~~~~-~~i~~~~~~pdg~~lasg~~dg~i~iwd~ 199 (343)
T 3lrv_A 125 ANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQY---IVHSAKSD-VEYSSGVLHKDSLLLALYSPDGILDVYNL 199 (343)
T ss_dssp SSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEE---EEECCCSS-CCCCEEEECTTSCEEEEECTTSCEEEEES
T ss_pred CCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEE---EEEecCCC-CceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 88999999999 654 7899999999999999876542 22212211 12345688999999999999999999999
Q ss_pred CCCcee-EEecC-CCCCeEEEEEe-C-CEEEEEeCCCcEEEEECCCCceeEEEecC--CCCceE-EEEEEcCCCCEEEEE
Q 008820 370 LDGTLS-CTMSG-HKSAVSTLAVC-N-GVLYSGSRDGTIRLWSLSDHSLLTVLEED--SSGAVS-SVLSLTAVQHTLVVS 442 (552)
Q Consensus 370 ~~~~~~-~~~~~-h~~~v~~l~~~-~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~-~~~~~s~~~~~l~~g 442 (552)
++++.+ ..+.. |..+|++++|+ + .+|++++ |++|++||+++++.+..+... +...+. ..++|+|++++|+++
T Consensus 200 ~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 278 (343)
T 3lrv_A 200 SSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAY 278 (343)
T ss_dssp SCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEE
T ss_pred CCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEe
Confidence 999988 78888 99999999999 3 3888888 559999999998766544321 001111 247999999999999
Q ss_pred EC-CCcEEEEeCCcceeeeecccceEEEEEe-----cCCEEEEEeCCCeEEEEecCCC
Q 008820 443 HE-SGSIKVWRNDKFMKSMQTHKGSVFAVFL-----EGKWLFTGGWDKTVSVQELAGD 494 (552)
Q Consensus 443 ~~-dg~i~iwd~~~~~~~~~~h~~~v~~v~~-----~~~~l~sgs~dg~i~iwd~~~~ 494 (552)
+. |+.|++|+..+....+.. .++..+.+ +...+++++.||.+.++-....
T Consensus 279 s~~d~~i~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 279 SNESNSLTIYKFDKKTKNWTK--DEESALCLQSDTADFTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp ETTTTEEEEEEECTTTCSEEE--EEEEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred cCCCCcEEEEEEcccccceEe--cCceeEecCccccccceeEEEecCCceEEEEecCC
Confidence 98 999999997544333332 44445544 5678999999999998865443
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-23 Score=210.67 Aligned_cols=246 Identities=13% Similarity=0.152 Sum_probs=191.5
Q ss_pred EEEEEeecCccceEEEEEc--CCEE-EEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEE
Q 008820 243 VKFKDLQGHRDCVTGLAVG--GGFL-FSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFV 319 (552)
Q Consensus 243 ~~~~~l~~H~~~V~~l~~s--~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~v 319 (552)
..+..+.+|. .+.+++|+ ++++ ++++.|++|++||+.+++.+..+..+. .+.+++|+|++..++++++.|+.|++
T Consensus 23 ~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v 100 (391)
T 1l0q_A 23 KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSV 100 (391)
T ss_dssp EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEE
Confidence 3444556665 48999999 6665 677799999999999999999988665 89999999988877788888999999
Q ss_pred EeCCCCCCCccccccccCCCceeeeEEEEeeCCCEE-EEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EE-
Q 008820 320 WSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYL-YTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VL- 395 (552)
Q Consensus 320 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l- 395 (552)
||+.+++....+. .+.. ....+++++++.+ ++++.|+.|++||+.+++.+..+..+. .+.+++|+ ++ .+
T Consensus 101 ~d~~~~~~~~~~~---~~~~---~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~ 173 (391)
T 1l0q_A 101 IDTTSNTVAGTVK---TGKS---PLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVY 173 (391)
T ss_dssp EETTTTEEEEEEE---CSSS---EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEE
T ss_pred EECCCCeEEEEEe---CCCC---cceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEE
Confidence 9998764433222 2221 2345788899866 788889999999999999998887654 56899999 33 55
Q ss_pred EEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEE---CCCcEEEEeCCc--ceeeeecccceEEEE
Q 008820 396 YSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH---ESGSIKVWRNDK--FMKSMQTHKGSVFAV 470 (552)
Q Consensus 396 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~---~dg~i~iwd~~~--~~~~~~~h~~~v~~v 470 (552)
++++.|+.|++||+++++....+... ..... ++++|+++++++++ .++.|++||... .+..+..|.. +.++
T Consensus 174 ~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~-~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 249 (391)
T 1l0q_A 174 VANFDSMSISVIDTVTNSVIDTVKVE--AAPSG-IAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGI 249 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECS--SEEEE-EEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEEecC--CCccc-eEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-ccEE
Confidence 67788999999999999888777643 33343 69999999999888 689999999653 4556666654 5566
Q ss_pred Ee--cCCEE-EEEeCCCeEEEEecCCCeeeeeec
Q 008820 471 FL--EGKWL-FTGGWDKTVSVQELAGDEFEEDVI 501 (552)
Q Consensus 471 ~~--~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~ 501 (552)
.+ ++++| ++++.|+.|++||+.+++....+.
T Consensus 250 ~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 250 AVTPDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 55 78877 677889999999999887665543
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-24 Score=218.41 Aligned_cols=228 Identities=11% Similarity=0.027 Sum_probs=155.3
Q ss_pred cCCCCEEEEEcCCCcEEEEeCCCCCCCc--cccccccCCCceeeeEEEEee--------CCCEEEEeeCCCcEEEEECCC
Q 008820 302 DEDQPLCISGDSGGGIFVWSFSFPLGHE--PLKKWNEEKDWRYSGIHALTT--------SGRYLYTGSGDRTIKAWSLLD 371 (552)
Q Consensus 302 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~~l~sgs~dg~i~iwd~~~ 371 (552)
+.+..++++++.|++|++||.+.+.... .+..+.+|... . ...+|+| ++++|++|+.|++|++||+++
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~-v-~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNF-V-NDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSC-E-EEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCc-e-EEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 3345579999999999999998764322 23344444442 2 2235555 678999999999999999999
Q ss_pred CceeEEecCCCCCeEEEEEeC-C--EEEEEeCCCcEEEEECCCCceeEEEec------------------------CCCC
Q 008820 372 GTLSCTMSGHKSAVSTLAVCN-G--VLYSGSRDGTIRLWSLSDHSLLTVLEE------------------------DSSG 424 (552)
Q Consensus 372 ~~~~~~~~~h~~~v~~l~~~~-~--~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------~~~~ 424 (552)
+.++..+.+|...|.+++|++ + +|++++.|++|++||+++++....... .+..
T Consensus 176 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 255 (393)
T 4gq1_A 176 EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIAS 255 (393)
T ss_dssp TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSS
T ss_pred CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccc
Confidence 988888888999999999993 2 799999999999999998765443321 1223
Q ss_pred ceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeeecccceEEEE-------------------E-e--cCCEEEEE
Q 008820 425 AVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAV-------------------F-L--EGKWLFTG 480 (552)
Q Consensus 425 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~h~~~v~~v-------------------~-~--~~~~l~sg 480 (552)
.+..+..+.++++.+++++.|+++++||+.. ....+..|...+..+ . + ++.++++|
T Consensus 256 ~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg 335 (393)
T 4gq1_A 256 SLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAH 335 (393)
T ss_dssp SCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEE
T ss_pred cceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEE
Confidence 3444444568999999999999999999642 333344443333221 1 1 44577888
Q ss_pred eCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-C-eEEEEeCCCeEEEEEec
Q 008820 481 GWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-G-KLFVGCADRTVKIALCN 537 (552)
Q Consensus 481 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~-~l~s~s~Dg~v~iw~~~ 537 (552)
+.||.|++||+.+++.......+ ...|.+++|+| + .|++++.|| +.+|++.
T Consensus 336 s~Dg~V~lwd~~~~~~~~~~~~~-----~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 336 SQHGLIQLINTYEKDSNSIPIQL-----GMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp TTTTEEEEEETTCTTCCEEEEEC-----SSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CCCCEEEEEECCCCcEEEEecCC-----CCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 99999999999987665544332 56799999995 3 377777655 7777664
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-23 Score=213.68 Aligned_cols=277 Identities=14% Similarity=0.126 Sum_probs=209.4
Q ss_pred EEEEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEE-----EEeCCCCCeEEEEEecCCCCEEEEEcCCC
Q 008820 243 VKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVH-----TFKGHDHKVMAVVYVDEDQPLCISGDSGG 315 (552)
Q Consensus 243 ~~~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~-----~~~~h~~~v~~v~~~~~~~~~l~s~~~dg 315 (552)
..+..+..|. .+.+++|+ +.++++++.|++|++||+.+++... .+.+|...|.+++|+++ +.++++++.|+
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~ 191 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH-NELWVSQMQAN 191 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG-TEEEEEEGGGT
T ss_pred eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC-CEEEEEECCCC
Confidence 3455565554 45589998 6677788889999999999999887 34578899999999774 55889999999
Q ss_pred cEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEE-EeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC
Q 008820 316 GIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLY-TGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG 393 (552)
Q Consensus 316 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~ 393 (552)
.|++||+++++....+. .+. ......+++++++.++ +++.|+.|++||+++++.+..+..+ ..+.+++|+ ++
T Consensus 192 ~v~~~d~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g 265 (433)
T 3bws_A 192 AVHVFDLKTLAYKATVD---LTG--KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDG 265 (433)
T ss_dssp EEEEEETTTCCEEEEEE---CSS--SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTS
T ss_pred EEEEEECCCceEEEEEc---CCC--CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCC
Confidence 99999998654333322 221 1223457888888774 5558999999999999998888754 458999998 33
Q ss_pred -EEEEEe--------CCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEE-EEEECCCcEEEEeCCc--ceeeee
Q 008820 394 -VLYSGS--------RDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTL-VVSHESGSIKVWRNDK--FMKSMQ 461 (552)
Q Consensus 394 -~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~iwd~~~--~~~~~~ 461 (552)
.+++++ .|+.|++||+++++.+..+... ..... ++++|+++.+ ++++.|+.|++||..+ ....+.
T Consensus 266 ~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~~~-~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~ 342 (433)
T 3bws_A 266 KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP--GNKRH-IVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP 342 (433)
T ss_dssp SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE--ECEEE-EEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC--CCcce-EEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec
Confidence 788877 5889999999999887776432 23333 6899999755 5668899999999753 344443
Q ss_pred cccceEEEEEe--cCCEEEEEeC---------------CCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eE
Q 008820 462 THKGSVFAVFL--EGKWLFTGGW---------------DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KL 522 (552)
Q Consensus 462 ~h~~~v~~v~~--~~~~l~sgs~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l 522 (552)
+...+.++.+ +++++++++. ||.|++||+.+++....... ...+.+++|+++ .|
T Consensus 343 -~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l 415 (433)
T 3bws_A 343 -VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA------GNQPTGLDVSPDNRYL 415 (433)
T ss_dssp -CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC------SSSEEEEEECTTSCEE
T ss_pred -CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC------CCCCceEEEcCCCCEE
Confidence 6667777776 7888888876 57999999998877665543 345899999953 47
Q ss_pred EEEeC-CCeEEEEEec
Q 008820 523 FVGCA-DRTVKIALCN 537 (552)
Q Consensus 523 ~s~s~-Dg~v~iw~~~ 537 (552)
++++. |+.|++|+++
T Consensus 416 ~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 416 VISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEETTTTEEEEEEET
T ss_pred EEEECCCCeEEEEEec
Confidence 77764 9999999987
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-25 Score=221.45 Aligned_cols=225 Identities=12% Similarity=0.130 Sum_probs=159.5
Q ss_pred eeeecCcceEEEeeCCCeEEEEE--------------eecCccceEEEEEc----------CCEEEEEeCCCcEEEEeCC
Q 008820 225 ARAAGGVKDLVNGLSKGNVKFKD--------------LQGHRDCVTGLAVG----------GGFLFSSSFDKSIHVWSLK 280 (552)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~--------------l~~H~~~V~~l~~s----------~~~l~s~s~dg~I~iwd~~ 280 (552)
.........++++..++.+++|+ +.||.+.|++++|+ +++|+||+.|++|+|||+.
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 34455667788999999999986 45899999999995 5799999999999999999
Q ss_pred CCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcccccccc---------------------CCC
Q 008820 281 DFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNE---------------------EKD 339 (552)
Q Consensus 281 ~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---------------------~~~ 339 (552)
++.++..+..|...|.+++|+|++..+|++++.|++|++||+.++........... .+.
T Consensus 175 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 254 (393)
T 4gq1_A 175 DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA 254 (393)
T ss_dssp TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCS
T ss_pred CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccc
Confidence 99988888899999999999998888999999999999999987654322211100 011
Q ss_pred ceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEE------------------EEe---CC-EEEE
Q 008820 340 WRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTL------------------AVC---NG-VLYS 397 (552)
Q Consensus 340 ~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l------------------~~~---~~-~l~s 397 (552)
.....+....++++.+++++.|+++++||+..++....+..|...+..+ .++ ++ ++++
T Consensus 255 ~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 334 (393)
T 4gq1_A 255 SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATA 334 (393)
T ss_dssp SSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEE
T ss_pred ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEE
Confidence 1122233345789999999999999999998887766665555444333 222 23 5677
Q ss_pred EeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEe
Q 008820 398 GSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR 452 (552)
Q Consensus 398 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 452 (552)
|+.||+|++||+.+++.......+. ..+.+ ++|+|+|++|++++.+| +.+|+
T Consensus 335 gs~Dg~V~lwd~~~~~~~~~~~~~~-~~V~s-vafspdG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 335 HSQHGLIQLINTYEKDSNSIPIQLG-MPIVD-FCWHQDGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp ETTTTEEEEEETTCTTCCEEEEECS-SCEEE-EEECTTSSEEEEEESSE-EEEEE
T ss_pred ECCCCEEEEEECCCCcEEEEecCCC-CcEEE-EEEcCCCCEEEEEeCCC-eEEEE
Confidence 8899999999999998887776654 45555 69999999999998776 55555
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=204.01 Aligned_cols=198 Identities=15% Similarity=0.118 Sum_probs=150.8
Q ss_pred cCccceEEEEEc-CCEEEEEe--CCCcEEEEeC-CCCeEEEEEeCCCCCeEEEEEec--CCCCEEEEEcCCCcEEEEeCC
Q 008820 250 GHRDCVTGLAVG-GGFLFSSS--FDKSIHVWSL-KDFSHVHTFKGHDHKVMAVVYVD--EDQPLCISGDSGGGIFVWSFS 323 (552)
Q Consensus 250 ~H~~~V~~l~~s-~~~l~s~s--~dg~I~iwd~-~~~~~~~~~~~h~~~v~~v~~~~--~~~~~l~s~~~dg~i~vwd~~ 323 (552)
+|...|.++ . ++.+.+++ .|+.|++|++ .+++.+..+.+|...++.++|++ .++.+|++++.|++|++||+.
T Consensus 134 g~~~~v~~l--~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~ 211 (356)
T 2w18_A 134 GNIKAVLGL--TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK 211 (356)
T ss_dssp EEEEEEEEE--TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT
T ss_pred CCeEEEEec--CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC
Confidence 344444443 5 55555543 5999999999 55899999999999999999987 345689999999999999999
Q ss_pred CCCCCccccccccCCC-ceeeeEEEEeeCCCEE------------EEeeCCCcEEEEECCCCceeEEe-----cCCCCCe
Q 008820 324 FPLGHEPLKKWNEEKD-WRYSGIHALTTSGRYL------------YTGSGDRTIKAWSLLDGTLSCTM-----SGHKSAV 385 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l------------~sgs~dg~i~iwd~~~~~~~~~~-----~~h~~~v 385 (552)
+++....+. .+.. .......+|+|++.++ ++|+.|++|++||..+++.+..+ .+|...+
T Consensus 212 TGk~l~tL~---g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~ 288 (356)
T 2w18_A 212 TGQLLKKMH---IDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRF 288 (356)
T ss_dssp TCCEEEEEE---CCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCE
T ss_pred CCcEEEEEc---CCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCccee
Confidence 876544443 2221 1122234788888865 67889999999999999988765 4777777
Q ss_pred EEEEEeCCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 008820 386 STLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN 453 (552)
Q Consensus 386 ~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 453 (552)
.+..+++..+++++.|++|++||+.+++++.++..|...... .++|+|+|++|++|+.|++|+|||.
T Consensus 289 lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs-~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 289 LEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWS-FVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCC-EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEE-EEEECCCCCEEEEEECCCcEEEecC
Confidence 666666779999999999999999999999999876544443 3699999999999999999999984
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.4e-25 Score=237.79 Aligned_cols=233 Identities=21% Similarity=0.277 Sum_probs=187.7
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEEe-----------ecCccceEEEEEc----CCEEEEEeCCCcEEEEeCCCC
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKDL-----------QGHRDCVTGLAVG----GGFLFSSSFDKSIHVWSLKDF 282 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~H~~~V~~l~~s----~~~l~s~s~dg~I~iwd~~~~ 282 (552)
+...+..+.+++.+..++++..++.+.+|++ .+|.++|++++|+ +++|++|+.||+|++||+.++
T Consensus 8 H~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~ 87 (753)
T 3jro_A 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG 87 (753)
T ss_dssp CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT
T ss_pred CcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC
Confidence 4456788888888999999999999998875 4799999999997 789999999999999999998
Q ss_pred e--EEEEEeCCCCCeEEEEEecCC-CCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEee---------
Q 008820 283 S--HVHTFKGHDHKVMAVVYVDED-QPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT--------- 350 (552)
Q Consensus 283 ~--~~~~~~~h~~~v~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 350 (552)
+ .+..+.+|...|.+++|+|+. +.++++|+.||.|++||+.......... ...+.. .....+++|
T Consensus 88 ~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~-~~~~~~--~v~~l~~~p~~~~~~~~~ 164 (753)
T 3jro_A 88 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII-IDAHAI--GVNSASWAPATIEEDGEH 164 (753)
T ss_dssp EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE-EECCSS--CEEEEEECCCC-------
T ss_pred cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE-eecCCC--ceEEEEecCccccccccc
Confidence 7 778888999999999999973 5688999999999999998764333222 222221 122345666
Q ss_pred ----CCCEEEEeeCCCcEEEEECCCC----ceeEEecCCCCCeEEEEEe-C---C-EEEEEeCCCcEEEEECCCCceeE-
Q 008820 351 ----SGRYLYTGSGDRTIKAWSLLDG----TLSCTMSGHKSAVSTLAVC-N---G-VLYSGSRDGTIRLWSLSDHSLLT- 416 (552)
Q Consensus 351 ----~~~~l~sgs~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~-~---~-~l~s~~~dg~i~iwd~~~~~~~~- 416 (552)
+++.+++|+.||.|++||++++ .+...+.+|...|++++|+ + + ++++++.||.|++||+++++...
T Consensus 165 ~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~ 244 (753)
T 3jro_A 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 244 (753)
T ss_dssp --CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCB
T ss_pred ccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcce
Confidence 4789999999999999999877 5667788999999999999 4 4 89999999999999998864211
Q ss_pred -EE-e-cCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 008820 417 -VL-E-EDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND 454 (552)
Q Consensus 417 -~~-~-~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 454 (552)
.. . ..+...+.+ ++|+|+++++++|+.||.|++||..
T Consensus 245 ~~~~~~~~~~~~v~~-l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 245 KTLLKEEKFPDVLWR-ASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp CCBSSSSCCSSCCCC-EEECTTTCCEEEECSSSCEECCBCC
T ss_pred eEEeccCCCCCceEE-EEEcCCCCEEEEEcCCCEEEEEecC
Confidence 11 1 112344444 6999999999999999999999965
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-23 Score=210.59 Aligned_cols=260 Identities=14% Similarity=0.145 Sum_probs=204.5
Q ss_pred cceeeecCcceEEEeeCCCeEEEEEe--------------ecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEE
Q 008820 223 DQARAAGGVKDLVNGLSKGNVKFKDL--------------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVH 286 (552)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~l--------------~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~ 286 (552)
..+.+++++..++++..++.+.+|++ .+|.+.|.+++|+ ++++++++.|+.|++||+++++.+.
T Consensus 126 ~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~ 205 (433)
T 3bws_A 126 KSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA 205 (433)
T ss_dssp CCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE
T ss_pred eEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE
Confidence 35666665556666666777777764 3788899999998 8899999999999999999999999
Q ss_pred EEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEee-------
Q 008820 287 TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS------- 359 (552)
Q Consensus 287 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs------- 359 (552)
.+..|...+.+++|+|++..++++++.|+.|++||++++.....+ .... .....+++++++.+++++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~---~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~ 279 (433)
T 3bws_A 206 TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT---DKIG---LPRGLLLSKDGKELYIAQFSASNQE 279 (433)
T ss_dssp EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC---CCCS---EEEEEEECTTSSEEEEEEEESCTTC
T ss_pred EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe---cCCC---CceEEEEcCCCCEEEEEECCCCccc
Confidence 999999999999999988877788889999999999865432222 2211 123457888999888887
Q ss_pred -CCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC--EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCC
Q 008820 360 -GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG--VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAV 435 (552)
Q Consensus 360 -~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~ 435 (552)
.||.|++||+.+++.+..+. |...+.+++|+ ++ ++++++.|+.|++||+.+++.+..+... ..+.. ++++|+
T Consensus 280 ~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~~-~~~s~d 355 (433)
T 3bws_A 280 SGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF--DKPNT-IALSPD 355 (433)
T ss_dssp SCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS--SSEEE-EEECTT
T ss_pred cCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC--CCCCe-EEEcCC
Confidence 58899999999998877663 55678999999 33 5567789999999999999888877643 33444 799999
Q ss_pred CCEEEEEEC---------------CCcEEEEeCCc--ceeeeecccceEEEEEe--cCCEEEEEeC-CCeEEEEecCC
Q 008820 436 QHTLVVSHE---------------SGSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKWLFTGGW-DKTVSVQELAG 493 (552)
Q Consensus 436 ~~~l~~g~~---------------dg~i~iwd~~~--~~~~~~~h~~~v~~v~~--~~~~l~sgs~-dg~i~iwd~~~ 493 (552)
++++++++. ||.|++||..+ .+..+.. ...+.++.+ ++++|++++. |+.|++|++++
T Consensus 356 g~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 356 GKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 999998876 57999999653 4455554 346677766 8999988875 99999999864
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-20 Score=195.81 Aligned_cols=315 Identities=11% Similarity=0.042 Sum_probs=217.1
Q ss_pred cCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeC--CCCeEEEEEeCCCCCe
Q 008820 229 GGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSL--KDFSHVHTFKGHDHKV 295 (552)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~--~~~~~~~~~~~h~~~v 295 (552)
+.+..+++...++.+.+|+ +..+.. +.+++|+ +++|++++.|++|++||+ .+++.+.++.. ...+
T Consensus 147 p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p 224 (543)
T 1nir_A 147 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEA 224 (543)
T ss_dssp GGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEE
T ss_pred CCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCc
Confidence 3344445555555555544 442323 8899999 899999999999999999 89999999884 4567
Q ss_pred EEEEEec----CCCCEEEEEcCCCcEEEEeCCCCCCCccccccccC------CCceeeeEEEEeeCCC-EEEEeeCCCcE
Q 008820 296 MAVVYVD----EDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEE------KDWRYSGIHALTTSGR-YLYTGSGDRTI 364 (552)
Q Consensus 296 ~~v~~~~----~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~l~sgs~dg~i 364 (552)
..++|+| ++..++++...+++|.+||..+.+....+...... +.........+++++. .+++...++.|
T Consensus 225 ~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i 304 (543)
T 1nir_A 225 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV 304 (543)
T ss_dssp EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred ceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeE
Confidence 9999999 88765555556999999999876554443321100 0001122345677655 67778889999
Q ss_pred EEEECCCCceeE--EecCCCCCeEEEEEe-CC-EEEE-EeCCCcEEEEECCCCceeEEEecC---CCCceEEEEEEcCC-
Q 008820 365 KAWSLLDGTLSC--TMSGHKSAVSTLAVC-NG-VLYS-GSRDGTIRLWSLSDHSLLTVLEED---SSGAVSSVLSLTAV- 435 (552)
Q Consensus 365 ~iwd~~~~~~~~--~~~~h~~~v~~l~~~-~~-~l~s-~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~s~~- 435 (552)
.+||..+.+.+. .+. +...+.++.|+ ++ ++++ +..+++|.+||+.+++++..+... +.+.... .++|+
T Consensus 305 ~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~--~~~p~~ 381 (543)
T 1nir_A 305 LLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN--FVHPKY 381 (543)
T ss_dssp EEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEE--EEETTT
T ss_pred EEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcc--cCCCCC
Confidence 999998876544 443 56678899999 43 5554 456899999999999998888753 2222222 35676
Q ss_pred CCEEEEEE-CCCcEEEEeC---------CcceeeeecccceEEEEE--ecCCEEEEEe-------CCCeEEEEecCCCee
Q 008820 436 QHTLVVSH-ESGSIKVWRN---------DKFMKSMQTHKGSVFAVF--LEGKWLFTGG-------WDKTVSVQELAGDEF 496 (552)
Q Consensus 436 ~~~l~~g~-~dg~i~iwd~---------~~~~~~~~~h~~~v~~v~--~~~~~l~sgs-------~dg~i~iwd~~~~~~ 496 (552)
+..++++. .|++|.+||. .+.++++.+|...+..+. +++++|++++ .+++|.+||+.+.+.
T Consensus 382 g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 382 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA 461 (543)
T ss_dssp EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCC
Confidence 56666665 5899999995 356788888887766555 4999999987 277999999998765
Q ss_pred eeeeccCC----CcccCcceEEEEEeC-C-eEEEE-----eCCCeEEEEEecCCcceeEEEecc
Q 008820 497 EEDVIPTG----AIPCGSVITALLYWQ-G-KLFVG-----CADRTVKIALCNRQIPEIFSLLLH 549 (552)
Q Consensus 497 ~~~~~~~~----~~~~~~~v~~l~~~~-~-~l~s~-----s~Dg~v~iw~~~~~~~~~~~~~gh 549 (552)
........ -..+...+..+.|++ + .++++ +.|+.|.|||.. +.+.+..+.++
T Consensus 462 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~-t~~~~~~i~~~ 524 (543)
T 1nir_A 462 KYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK-TLKLKAVVKDP 524 (543)
T ss_dssp CCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETT-TTEEEEEECCT
T ss_pred CeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECC-CceEEEeecCC
Confidence 52221100 011256789999995 3 35544 247999999987 66666666643
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.4e-20 Score=184.20 Aligned_cols=278 Identities=9% Similarity=0.012 Sum_probs=192.9
Q ss_pred ceEEEEEc---CCEEEEEe----CCC----cEEEEeC--CCCeEE--EEEeCCCCCeEEEEEecC--------------C
Q 008820 254 CVTGLAVG---GGFLFSSS----FDK----SIHVWSL--KDFSHV--HTFKGHDHKVMAVVYVDE--------------D 304 (552)
Q Consensus 254 ~V~~l~~s---~~~l~s~s----~dg----~I~iwd~--~~~~~~--~~~~~h~~~v~~v~~~~~--------------~ 304 (552)
.+...+|. .+.+++|+ .|| +|++||+ .+++.+ ..+.+|...+..+++.+. +
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~ 143 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR 143 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 44455554 34566665 467 8999999 899887 558889888887776641 3
Q ss_pred CCEEEEEcC--C---CcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCC---cEEEEECCCCceeE
Q 008820 305 QPLCISGDS--G---GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR---TIKAWSLLDGTLSC 376 (552)
Q Consensus 305 ~~~l~s~~~--d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg---~i~iwd~~~~~~~~ 376 (552)
..+++++.. + +.|++||++... .. .+..+.. .....+++|+++.|++++.++ .|++||+.+++..
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~--~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~- 216 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQ--PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR- 216 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESS--CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-
T ss_pred CEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCC--cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-
Confidence 434333332 2 799999997432 22 2222221 123457899999999999875 9999999998875
Q ss_pred EecCCCCCeEEEEEe-CC-EEE-EEeCCCc--EEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEEC-CC--cE
Q 008820 377 TMSGHKSAVSTLAVC-NG-VLY-SGSRDGT--IRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHE-SG--SI 448 (552)
Q Consensus 377 ~~~~h~~~v~~l~~~-~~-~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg--~i 448 (552)
.+..|...+.+++|+ ++ .|+ +++.|+. |++||+.+++. ..+..+ ...... ++|+|+|+.|++++. ++ .|
T Consensus 217 ~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~-~~~~~~-~~~spdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 217 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG-RSNNTE-PTWFPDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC-SSCEEE-EEECTTSSEEEEEECTTSSCEE
T ss_pred EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC-CCcccc-eEECCCCCEEEEEECCCCCcEE
Confidence 566788899999999 44 566 6666665 99999998876 344433 334444 699999999998876 45 67
Q ss_pred EEEeCCc-ceeeeecccceEEEEEe--cCCEEEEEeCC---CeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--
Q 008820 449 KVWRNDK-FMKSMQTHKGSVFAVFL--EGKWLFTGGWD---KTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG-- 520 (552)
Q Consensus 449 ~iwd~~~-~~~~~~~h~~~v~~v~~--~~~~l~sgs~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-- 520 (552)
++||... ....+..|...+.++.| +|++|++++.+ ..|++||+.+++.... .. ...+.+++|+|+
T Consensus 294 ~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l-~~------~~~~~~~~~spdg~ 366 (415)
T 2hqs_A 294 YKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL-SS------TFLDETPSLAPNGT 366 (415)
T ss_dssp EEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC-CC------SSSCEEEEECTTSS
T ss_pred EEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEe-cC------CCCcCCeEEcCCCC
Confidence 7778653 34455567777777665 89999988764 5899999998766432 11 126889999953
Q ss_pred eEEEEeCCC---eEEEEEecCCcceeEEEeccc
Q 008820 521 KLFVGCADR---TVKIALCNRQIPEIFSLLLHI 550 (552)
Q Consensus 521 ~l~s~s~Dg---~v~iw~~~~~~~~~~~~~gh~ 550 (552)
.|++++.|+ .|++|+++ +.....+.+|.
T Consensus 367 ~l~~~s~~~~~~~l~~~d~~--g~~~~~l~~~~ 397 (415)
T 2hqs_A 367 MVIYSSSQGMGSVLNLVSTD--GRFKARLPATD 397 (415)
T ss_dssp EEEEEEEETTEEEEEEEETT--SCCEEECCCSS
T ss_pred EEEEEEcCCCccEEEEEECC--CCcEEEeeCCC
Confidence 377777766 78888876 44556666664
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-19 Score=176.34 Aligned_cols=272 Identities=10% Similarity=0.018 Sum_probs=194.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEeCCCC--CeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCc
Q 008820 263 GFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH--KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDW 340 (552)
Q Consensus 263 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 340 (552)
+++++++.+++|++||..+++.+..+..... .+..++|+|++..+++++..++.|.+||+.+++....+.........
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 5789999999999999999999888874332 57899999998878888888999999999876543332211100000
Q ss_pred eeeeEEEEeeCCCEEEEee------------CCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeCCCcEEE
Q 008820 341 RYSGIHALTTSGRYLYTGS------------GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRL 406 (552)
Q Consensus 341 ~~~~~~~~~~~~~~l~sgs------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i~i 406 (552)
......+++++++++++++ .++.|.+||+.+++.+..+.. ...+.+++|+ ++ +++++ ++.|++
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 0112357889999888886 579999999999988887764 4567888998 43 56666 789999
Q ss_pred EECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCC------------------------cEEEEeCCcc---eee
Q 008820 407 WSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG------------------------SIKVWRNDKF---MKS 459 (552)
Q Consensus 407 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg------------------------~i~iwd~~~~---~~~ 459 (552)
||+.+++....+....... . ..++|+++.++..+.++ .|.+||.... ...
T Consensus 159 ~d~~~~~~~~~~~~~~~~~--~-~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 235 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSWEA--E-TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTTTT--T-TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred EECCCCcEeeeeeccccCC--C-ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEee
Confidence 9999998887776543111 1 26788888766554332 4678886542 122
Q ss_pred eecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEEeCCCeEEEEE
Q 008820 460 MQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGCADRTVKIAL 535 (552)
Q Consensus 460 ~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~Dg~v~iw~ 535 (552)
+..+...+.++.+ ++++++++ ++.|++||+.+++....... ...+.+++|++ ..+++++.|+.|++||
T Consensus 236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL------PHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC------SSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC------CCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 3445556656655 89999888 79999999998876655443 23467889985 3488888999999999
Q ss_pred ecCCcceeEEEecc
Q 008820 536 CNRQIPEIFSLLLH 549 (552)
Q Consensus 536 ~~~~~~~~~~~~gh 549 (552)
+. +...+..+..+
T Consensus 308 ~~-~~~~~~~~~~~ 320 (337)
T 1pby_B 308 AE-TLEKKGQVDLP 320 (337)
T ss_dssp TT-TCCEEEEEECG
T ss_pred Cc-CCcEEEEEEcC
Confidence 97 45555555443
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-19 Score=188.33 Aligned_cols=261 Identities=11% Similarity=0.031 Sum_probs=190.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC--CCCCCCccccccccCCC
Q 008820 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF--SFPLGHEPLKKWNEEKD 339 (552)
Q Consensus 262 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~ 339 (552)
+..+++++.|++|.+||..+++++.++..+.. +..++|+|++. ++++++.|++|++||+ .+.+. +..+....
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~-~l~v~~~d~~V~v~D~~~~t~~~---~~~i~~g~- 222 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGR-YLLVIGRDARIDMIDLWAKEPTK---VAEIKIGI- 222 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSC-EEEEEETTSEEEEEETTSSSCEE---EEEEECCS-
T ss_pred CEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCC-EEEEECCCCeEEEEECcCCCCcE---EEEEecCC-
Confidence 77888999999999999999999999984433 89999999766 6678888899999999 54432 22222211
Q ss_pred ceeeeEEEEee----CCCEEEEee-CCCcEEEEECCCCceeEEecCC-----------CCCeEEEEEe-CC--EEEEEeC
Q 008820 340 WRYSGIHALTT----SGRYLYTGS-GDRTIKAWSLLDGTLSCTMSGH-----------KSAVSTLAVC-NG--VLYSGSR 400 (552)
Q Consensus 340 ~~~~~~~~~~~----~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~h-----------~~~v~~l~~~-~~--~l~s~~~ 400 (552)
. ..-.+++| +++++++++ .+++|.+||..+++++..+..+ ...+.++.++ ++ ++++...
T Consensus 223 -~-p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 223 -E-ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp -E-EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred -C-cceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 1 23457899 999988887 4899999999999999887642 2368899998 23 7778888
Q ss_pred CCcEEEEECCCCceeE--EEecCCCCceEEEEEEcCCCCEEEEEE-CCCcEEEEeCC--cceeeeec----ccceEEEE-
Q 008820 401 DGTIRLWSLSDHSLLT--VLEEDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRND--KFMKSMQT----HKGSVFAV- 470 (552)
Q Consensus 401 dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~--~~~~~~~~----h~~~v~~v- 470 (552)
+++|.+||+.+.+.+. .+.. ...... +.|+|+++++++++ .+++|.+||.. ++...+.. |.+....+
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i~~--~~~~~~-~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~ 377 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSIGA--APFLHD-GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFV 377 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEEEC--CSSCCC-EEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEE
T ss_pred CCeEEEEEecCCCcceeEEecc--CcCccC-ceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccC
Confidence 9999999998876554 3332 223333 68999999877655 58899999965 45555553 55433333
Q ss_pred Eec-CCEEEEEe-CCCeEEEEecCC-------CeeeeeeccCCCcccCcceEEEEEeCC--eEEEEe-------CCCeEE
Q 008820 471 FLE-GKWLFTGG-WDKTVSVQELAG-------DEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGC-------ADRTVK 532 (552)
Q Consensus 471 ~~~-~~~l~sgs-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s-------~Dg~v~ 532 (552)
.++ +..++++. .|++|.+||+.+ .+....+... ...+..+.++|+ .|++++ .+++|.
T Consensus 378 ~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~-----g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~ 452 (543)
T 1nir_A 378 HPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ-----GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA 452 (543)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-----CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEE
T ss_pred CCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC-----CCCceEEEcCCCCCcEEEecCCCCCcccCceEE
Confidence 445 66667765 589999999987 5555554432 334667888864 477776 278999
Q ss_pred EEEecC
Q 008820 533 IALCNR 538 (552)
Q Consensus 533 iw~~~~ 538 (552)
+||++.
T Consensus 453 v~d~~~ 458 (543)
T 1nir_A 453 VFDLKN 458 (543)
T ss_dssp EEETTC
T ss_pred EEECCC
Confidence 999983
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-19 Score=181.03 Aligned_cols=256 Identities=7% Similarity=-0.016 Sum_probs=182.5
Q ss_pred EEeecCccceEEEEEc----------------CCEEEEEeCC------CcEEEEeCCCCeEEEEEeCCCCCeEEEEEecC
Q 008820 246 KDLQGHRDCVTGLAVG----------------GGFLFSSSFD------KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDE 303 (552)
Q Consensus 246 ~~l~~H~~~V~~l~~s----------------~~~l~s~s~d------g~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~ 303 (552)
..+.+|...+..++++ +..++.++.+ ++|++||++. .....+.+|...+.+++|+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spd 189 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPD 189 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTT
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCC
Confidence 3466777777666554 5677777664 7999999974 556778889999999999998
Q ss_pred CCCEEEEEcCCC---cEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEE-EeeCCCc--EEEEECCCCceeEE
Q 008820 304 DQPLCISGDSGG---GIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLY-TGSGDRT--IKAWSLLDGTLSCT 377 (552)
Q Consensus 304 ~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sgs~dg~--i~iwd~~~~~~~~~ 377 (552)
+. .+++++.++ .|++||+.+++... ...+.. .....+|+|+++.|+ +++.|+. |++||+.+++. ..
T Consensus 190 g~-~la~~s~~~~~~~i~~~d~~tg~~~~----l~~~~~--~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~ 261 (415)
T 2hqs_A 190 GS-KLAYVTFESGRSALVIQTLANGAVRQ----VASFPR--HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQ 261 (415)
T ss_dssp SS-EEEEEECTTSSCEEEEEETTTCCEEE----EECCSS--CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EE
T ss_pred CC-EEEEEEecCCCcEEEEEECCCCcEEE----eecCCC--cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-Ee
Confidence 77 556666664 99999998764321 111211 223458899999777 6666665 99999988876 56
Q ss_pred ecCCCCCeEEEEEe-CC-EEEEEeC-CC--cEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECC---CcEE
Q 008820 378 MSGHKSAVSTLAVC-NG-VLYSGSR-DG--TIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES---GSIK 449 (552)
Q Consensus 378 ~~~h~~~v~~l~~~-~~-~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~ 449 (552)
+..|...+.+++|+ ++ .|++++. ++ .|.+||+.+++.. .+..+ ... ...++|+|+|++|++++.+ ..|+
T Consensus 262 l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~-~~~-~~~~~~spdG~~l~~~~~~~g~~~i~ 338 (415)
T 2hqs_A 262 VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWE-GSQ-NQDADVSSDGKFMVMVSSNGGQQHIA 338 (415)
T ss_dssp CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCS-SSE-EEEEEECTTSSEEEEEEECSSCEEEE
T ss_pred CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecC-CCc-ccCeEECCCCCEEEEEECcCCceEEE
Confidence 77788899999999 44 7777775 45 6888899887643 33322 223 3346999999999988764 5899
Q ss_pred EEeCCc-ceeeeecccceEEEEEe--cCCEEEEEeCCC---eEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC
Q 008820 450 VWRNDK-FMKSMQTHKGSVFAVFL--EGKWLFTGGWDK---TVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG 520 (552)
Q Consensus 450 iwd~~~-~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 520 (552)
+||... ....+..|. .+.++.| +|++|++++.++ .|++||+.++..... .. +...|.+++|+|.
T Consensus 339 ~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l-~~-----~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 339 KQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL-PA-----TDGQVKFPAWSPY 408 (415)
T ss_dssp EEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEEC-CC-----SSSEEEEEEECCC
T ss_pred EEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEe-eC-----CCCCCcCCccccc
Confidence 999754 334455554 6666665 899999988877 799999986644332 22 2567999999974
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8e-18 Score=165.33 Aligned_cols=270 Identities=10% Similarity=0.044 Sum_probs=196.6
Q ss_pred ccceEEEEEc--CCEEEEEeC-------CCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q 008820 252 RDCVTGLAVG--GGFLFSSSF-------DKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (552)
Q Consensus 252 ~~~V~~l~~s--~~~l~s~s~-------dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 322 (552)
...+..++|+ ++++++++. ++.|.+||..+++.+..+... ..+..++|+|+++.++++...++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 3567789998 778887774 568999999999998888753 447889999998878888888999999999
Q ss_pred CCCCCCccccccccCC----CceeeeEEEEeeCCCEEEEee--CCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCE
Q 008820 323 SFPLGHEPLKKWNEEK----DWRYSGIHALTTSGRYLYTGS--GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGV 394 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~sgs--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~ 394 (552)
.+++....+....... .........++++++.+++++ .++.|.+||..+++.+..+..+...+.+++|+ ++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 8765433332211110 000122357889999777665 47899999999999998888666678899999 348
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEecCCC--CceEEEEEEcCCCCEEEEEEC-CCcEEEEeCC--cceeeeecccceEEE
Q 008820 395 LYSGSRDGTIRLWSLSDHSLLTVLEEDSS--GAVSSVLSLTAVQHTLVVSHE-SGSIKVWRND--KFMKSMQTHKGSVFA 469 (552)
Q Consensus 395 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~--~~~~~~~~h~~~v~~ 469 (552)
+++++.++.|.+||+.+++....+..... ......++++|+++.+++++. ++.|.+||.. +....+......-..
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 278 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVL 278 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEE
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEE
Confidence 89999999999999999998887765222 222333689999998777765 4999999965 344455444433345
Q ss_pred EEecCCEEEEEe-CCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-C-eEEEEeCC
Q 008820 470 VFLEGKWLFTGG-WDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-G-KLFVGCAD 528 (552)
Q Consensus 470 v~~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~-~l~s~s~D 528 (552)
+++++++++.++ .++.|.+||..+++....... ...+.+++|++ + .++++..+
T Consensus 279 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 279 FNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT------PTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC------CSEEEEEEECTTSCEEEEEEEC
T ss_pred ECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec------CCCCCeEEEcCCCCEEEEEEcc
Confidence 566888666555 689999999998877665443 33578899984 3 36665554
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.7e-18 Score=165.00 Aligned_cols=268 Identities=10% Similarity=0.058 Sum_probs=181.7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCC-CccccccccCCCc
Q 008820 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLG-HEPLKKWNEEKDW 340 (552)
Q Consensus 262 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~ 340 (552)
+..+++++.++.|++||..+++....+..+...+ .++|+|++..+++++..++.|.+||..++.. ...+. ....
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~- 84 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ---EGQS- 84 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE---ECSS-
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc---cCCC-
Confidence 4568888899999999999999988888777777 9999998887777777799999999987654 22221 1111
Q ss_pred eeeeEEEEeeCCCEEEEeeCCC---cEEEEECCCCceeEEecCCCCCeEEEEEe-CC--EEEEEeCCCc-EEEEECCCCc
Q 008820 341 RYSGIHALTTSGRYLYTGSGDR---TIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG--VLYSGSRDGT-IRLWSLSDHS 413 (552)
Q Consensus 341 ~~~~~~~~~~~~~~l~sgs~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~--~l~s~~~dg~-i~iwd~~~~~ 413 (552)
.....++++++++++++..++ .|.+||+.+++.+..+..+ ....+++|+ ++ ++++...++. |.+|++....
T Consensus 85 -~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g 162 (331)
T 3u4y_A 85 -SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG 162 (331)
T ss_dssp -CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred -CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence 112147899999888666553 8999999999988887754 456899999 43 4455566688 9999997644
Q ss_pred eeEEE---ecCCCCceEEEEEEcCCCCEEEEEE-CCCcEEEEeCC--cc---eeeeecccceEEEE--EecCCEEEEEe-
Q 008820 414 LLTVL---EEDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRND--KF---MKSMQTHKGSVFAV--FLEGKWLFTGG- 481 (552)
Q Consensus 414 ~~~~~---~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~--~~---~~~~~~h~~~v~~v--~~~~~~l~sgs- 481 (552)
.+... ....... ...++++|+++++++++ .++.|++||.. +. +..+..+ ..+..+ +++|++++.++
T Consensus 163 ~~~~~~~~~~~~~~~-~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 163 VLFDTGQEFISGGTR-PFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp CEEEEEEEEECSSSS-EEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECS
T ss_pred cEeecCCccccCCCC-ccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEc
Confidence 33111 1111122 34479999999665555 68899999965 34 4445433 333444 45899776655
Q ss_pred CCCeEEEEecCCCeeee--eeccC--CCcccCcceEEEEEeCC--eEEEE-eCCCeEEEEEecC
Q 008820 482 WDKTVSVQELAGDEFEE--DVIPT--GAIPCGSVITALLYWQG--KLFVG-CADRTVKIALCNR 538 (552)
Q Consensus 482 ~dg~i~iwd~~~~~~~~--~~~~~--~~~~~~~~v~~l~~~~~--~l~s~-s~Dg~v~iw~~~~ 538 (552)
.++.|.+||+.+++... ..... ...........++|+++ .|+++ ..++.|.+|++..
T Consensus 241 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 241 STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 57889999999877622 21111 00011112356888853 36554 4567999999974
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.9e-18 Score=164.94 Aligned_cols=265 Identities=11% Similarity=0.173 Sum_probs=170.8
Q ss_pred EEEEEeCCCcEEEEeCC-CC--eEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC--CCCCCccccccccCC
Q 008820 264 FLFSSSFDKSIHVWSLK-DF--SHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS--FPLGHEPLKKWNEEK 338 (552)
Q Consensus 264 ~l~s~s~dg~I~iwd~~-~~--~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~ 338 (552)
.+++++.|+.|++||+. ++ +.+..+ .|...+.+++|+|++..+++++..++.|.+|+++ ++. ...+.......
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~ 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA-LTFAAESALPG 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC-EEEEEEEECSS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCc-eeeccccccCC
Confidence 34455789999999985 33 334443 4777899999999877555555555999999997 322 12222222111
Q ss_pred CceeeeEEEEeeCCCEEEEeeC-CCcEEEEECC---CCceeEEecCCCCCeEEEEEe-CC-EEEEEe-CCCcEEEEECCC
Q 008820 339 DWRYSGIHALTTSGRYLYTGSG-DRTIKAWSLL---DGTLSCTMSGHKSAVSTLAVC-NG-VLYSGS-RDGTIRLWSLSD 411 (552)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~sgs~-dg~i~iwd~~---~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~-~dg~i~iwd~~~ 411 (552)
.....+++++++++++++. ++.|.+||+. +.+....+..+ ..+.+++|+ ++ .+++++ .++.|++||+.+
T Consensus 85 ---~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 85 ---SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp ---CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred ---CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence 1234578999997766654 8899999994 44455555544 458899999 33 677776 899999999987
Q ss_pred -CceeE----EEecCCCCceEEEEEEcCCCCEEEEEE-CCCcEEEEeCCc----c--eeeee----cc--cceEEEEEe-
Q 008820 412 -HSLLT----VLEEDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRNDK----F--MKSMQ----TH--KGSVFAVFL- 472 (552)
Q Consensus 412 -~~~~~----~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~----~--~~~~~----~h--~~~v~~v~~- 472 (552)
++... .+.......... ++++|+++++++++ .++.|.+||... . ..... ++ ...+..+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~-~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s 239 (343)
T 1ri6_A 161 DGHLVAQDPAEVTTVEGAGPRH-MVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT 239 (343)
T ss_dssp TSCEEEEEEEEEECSTTCCEEE-EEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred CCceeeecccccccCCCCCcce-EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC
Confidence 65432 233332223333 78999999776655 789999999742 1 12222 11 223445555
Q ss_pred -cCCEEEE-EeCCCeEEEEecC--CCeeeeeeccCCCcccCcceEEEEEeC-C-eEEEEe-CCCeEEEEEecCC
Q 008820 473 -EGKWLFT-GGWDKTVSVQELA--GDEFEEDVIPTGAIPCGSVITALLYWQ-G-KLFVGC-ADRTVKIALCNRQ 539 (552)
Q Consensus 473 -~~~~l~s-gs~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~l~~~~-~-~l~s~s-~Dg~v~iw~~~~~ 539 (552)
++++|++ +..++.|++||+. ++......... ....+..++|++ + .|++++ .|+.|.+|+++..
T Consensus 240 ~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~ 309 (343)
T 1ri6_A 240 PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP----TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE 309 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE----CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred CCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec----CCCccceEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 7887774 4578999999998 33222211111 122377889985 3 477776 6899999988743
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-18 Score=184.82 Aligned_cols=279 Identities=8% Similarity=0.013 Sum_probs=189.0
Q ss_pred ccceEEEEEc--CCEEEEEeC-CC-----cEEEEeCCCCeEEEEEeCCCC------------------------CeEEEE
Q 008820 252 RDCVTGLAVG--GGFLFSSSF-DK-----SIHVWSLKDFSHVHTFKGHDH------------------------KVMAVV 299 (552)
Q Consensus 252 ~~~V~~l~~s--~~~l~s~s~-dg-----~I~iwd~~~~~~~~~~~~h~~------------------------~v~~v~ 299 (552)
...|.+++|+ |++|++++. |+ +|++||+.+++....+..+.. .+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 4568999999 899999998 88 899999999988777765433 378999
Q ss_pred EecCCCCEEEEEcCCCcEEEEeCCCCC--CCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEE
Q 008820 300 YVDEDQPLCISGDSGGGIFVWSFSFPL--GHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT 377 (552)
Q Consensus 300 ~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~ 377 (552)
|+|++..+ ++++. +.|++||+.++. ....+ ..+.. .....+++|+|++|++++. +.|++||+.+++....
T Consensus 116 ~SpDg~~l-~~~~~-~~i~~~d~~~~~~~~~~~l---~~~~~--~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 116 WSPDAQRL-LFPLG-GELYLYDLKQEGKAAVRQL---THGEG--FATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQL 187 (741)
T ss_dssp ECTTSSEE-EEEET-TEEEEEESSSCSTTSCCBC---CCSSS--CEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEEC
T ss_pred ECCCCCEE-EEEeC-CcEEEEECCCCCcceEEEc---ccCCc--ccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEe
Confidence 99988755 44444 999999998762 11122 12211 1234589999999998875 6899999998877655
Q ss_pred ecCCCCC----------------eEEEEEe-CC-EEEEEeCCC---------------------------------cEEE
Q 008820 378 MSGHKSA----------------VSTLAVC-NG-VLYSGSRDG---------------------------------TIRL 406 (552)
Q Consensus 378 ~~~h~~~----------------v~~l~~~-~~-~l~s~~~dg---------------------------------~i~i 406 (552)
...+... +.+++|+ ++ .|++++.|+ .|++
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 5444432 4779999 44 788887665 8899
Q ss_pred EECCC-CceeEEEec-CCCCceEEEEEEcCCCCEEEEEEC-----CCcEEEEeCCc--ceeeeecccc----eEEE--EE
Q 008820 407 WSLSD-HSLLTVLEE-DSSGAVSSVLSLTAVQHTLVVSHE-----SGSIKVWRNDK--FMKSMQTHKG----SVFA--VF 471 (552)
Q Consensus 407 wd~~~-~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~g~~-----dg~i~iwd~~~--~~~~~~~h~~----~v~~--v~ 471 (552)
||+.+ ++....... .+...+. .++| |||+.|++++. +..|++||..+ ....+..+.. .+.. ++
T Consensus 268 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 268 ISPAEQAQTQWIDLGKEQDIYLA-RVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp ECSSTTCCCEEECCCSCSSEEEE-EEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EECCCCCceEEecCCCCcceEEE-EEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 99988 776544322 1223333 3689 99999997764 56799999653 3444444432 2223 44
Q ss_pred ecCCEEEEEeCCCeEEEEecC-CCeeeeeeccCCCcccCcceEEE-EEeC-C-eEE-EEeCCC--eEEEEEecCCcceeE
Q 008820 472 LEGKWLFTGGWDKTVSVQELA-GDEFEEDVIPTGAIPCGSVITAL-LYWQ-G-KLF-VGCADR--TVKIALCNRQIPEIF 544 (552)
Q Consensus 472 ~~~~~l~sgs~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~l-~~~~-~-~l~-s~s~Dg--~v~iw~~~~~~~~~~ 544 (552)
+||+++++++.||.+++|.+. ++. ...+... ...+..+ .|++ + .++ +++.|+ .++||+++..+....
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~-----~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~ 419 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKGK-AAALTHG-----NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQ 419 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSSC-EEESCCS-----SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCE
T ss_pred CCCeEEEEecCCCccEEEEEcCCCC-eeeeeec-----ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCee
Confidence 589999999999988888765 233 2222221 4456666 5885 3 354 555565 899999975444333
Q ss_pred EE
Q 008820 545 SL 546 (552)
Q Consensus 545 ~~ 546 (552)
.+
T Consensus 420 ~l 421 (741)
T 2ecf_A 420 RL 421 (741)
T ss_dssp EC
T ss_pred ec
Confidence 33
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.4e-17 Score=158.01 Aligned_cols=243 Identities=13% Similarity=0.156 Sum_probs=163.3
Q ss_pred ecCccceEEEEEc--CCEEEEEeCC-CcEEEEeCC--CCe--EEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEe
Q 008820 249 QGHRDCVTGLAVG--GGFLFSSSFD-KSIHVWSLK--DFS--HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (552)
Q Consensus 249 ~~H~~~V~~l~~s--~~~l~s~s~d-g~I~iwd~~--~~~--~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 321 (552)
..|...+.+++|+ +++|++++.+ +.|++|++. +++ .+..+..+. .+..++|+|++..+++++..++.|.+||
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence 3577788899998 8888888876 999999997 554 445555544 7899999998887767777799999999
Q ss_pred CCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEee-CCCcEEEEECCC-CceeE----EecC-CCCCeEEEEEe-CC
Q 008820 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS-GDRTIKAWSLLD-GTLSC----TMSG-HKSAVSTLAVC-NG 393 (552)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs-~dg~i~iwd~~~-~~~~~----~~~~-h~~~v~~l~~~-~~ 393 (552)
+..+.............. ....+++++++.+++++ .++.|++||+.+ ++... .+.. ....+.+++|+ ++
T Consensus 113 ~~~~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg 189 (343)
T 1ri6_A 113 LEDGLPVGVVDVVEGLDG---CHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE 189 (343)
T ss_dssp EETTEEEEEEEEECCCTT---BCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred CCCCccccccccccCCCC---ceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCC
Confidence 952222222222222111 12347899999887777 899999999987 65432 2222 34578899999 33
Q ss_pred -EEEE-EeCCCcEEEEECCC--Cce--eEEEecCCC----CceEEEEEEcCCCCEEEEEE-CCCcEEEEeCC----c--c
Q 008820 394 -VLYS-GSRDGTIRLWSLSD--HSL--LTVLEEDSS----GAVSSVLSLTAVQHTLVVSH-ESGSIKVWRND----K--F 456 (552)
Q Consensus 394 -~l~s-~~~dg~i~iwd~~~--~~~--~~~~~~~~~----~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~----~--~ 456 (552)
++++ +..++.|++||+.. ++. ...+..... ......++|+|++++++++. .++.|.+||.. + .
T Consensus 190 ~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~ 269 (343)
T 1ri6_A 190 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK 269 (343)
T ss_dssp SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEE
Confidence 5554 45899999999953 433 223321111 11222378999998887554 78999999975 1 2
Q ss_pred eeeeecccceEEEEEe--cCCEEEEEe-CCCeEEEEec--CCCee
Q 008820 457 MKSMQTHKGSVFAVFL--EGKWLFTGG-WDKTVSVQEL--AGDEF 496 (552)
Q Consensus 457 ~~~~~~h~~~v~~v~~--~~~~l~sgs-~dg~i~iwd~--~~~~~ 496 (552)
+..+..+.. +.++.+ ++++|++++ .++.|.+|++ .++++
T Consensus 270 ~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 270 EGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp EEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred eeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 233333333 555555 899888887 6899999955 45543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-17 Score=179.73 Aligned_cols=307 Identities=8% Similarity=-0.018 Sum_probs=209.0
Q ss_pred CccccceeeecCcceEEEeeC-CC-----eEEEEEeec---------Cc------------------------cceEEEE
Q 008820 219 GADIDQARAAGGVKDLVNGLS-KG-----NVKFKDLQG---------HR------------------------DCVTGLA 259 (552)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~l~~---------H~------------------------~~V~~l~ 259 (552)
+..+..+.++++++.+++... ++ .+.+|++.+ |. ..|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 334677888889988888877 66 677776432 22 2378899
Q ss_pred Ec--CCEEEEEeCCCcEEEEeCCCCe--EEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccc
Q 008820 260 VG--GGFLFSSSFDKSIHVWSLKDFS--HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWN 335 (552)
Q Consensus 260 ~s--~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 335 (552)
|+ |++|++++. +.|++||+.++. ....+..|...+..++|+|++..+ ++++ ++.|++||+.++........
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~l-a~~~-~~~i~~~d~~~g~~~~~~~~-- 190 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFV-SFIR-GRNLWVIDLASGRQMQLTAD-- 190 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEE-EEEE-TTEEEEEETTTTEEEECCCC--
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEE-EEEe-CCcEEEEecCCCCEEEeccC--
Confidence 99 899999886 899999999873 345567788899999999988744 5554 56999999986543221111
Q ss_pred cCCCce--------------eeeEEEEeeCCCEEEEeeCCC---------------------------------cEEEEE
Q 008820 336 EEKDWR--------------YSGIHALTTSGRYLYTGSGDR---------------------------------TIKAWS 368 (552)
Q Consensus 336 ~~~~~~--------------~~~~~~~~~~~~~l~sgs~dg---------------------------------~i~iwd 368 (552)
..... .....+++|||+.|++++.|+ .|++||
T Consensus 191 -~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 191 -GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp -CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred -CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 11000 012358999999999887765 789999
Q ss_pred CCC-CceeEEec--CCCCCeEEEEEe-CCEEEEEeC-----CCcEEEEECCCCceeEEEecCCCCce--EEEEEEcCCCC
Q 008820 369 LLD-GTLSCTMS--GHKSAVSTLAVC-NGVLYSGSR-----DGTIRLWSLSDHSLLTVLEEDSSGAV--SSVLSLTAVQH 437 (552)
Q Consensus 369 ~~~-~~~~~~~~--~h~~~v~~l~~~-~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~ 437 (552)
+.+ ++...... .|...+.+++|. +..|++++. +..|++||+.+++....+..+....+ ...+.|+|||+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~ 349 (741)
T 2ecf_A 270 PAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS 349 (741)
T ss_dssp SSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC
T ss_pred CCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe
Confidence 988 87665443 477788899983 236666553 57899999999988776665432211 11258999999
Q ss_pred EEEEEECCCcEEEEe--CCcceeeeecccceEEEE---EecCCEEEE-EeCCC--eEEEEecCC-CeeeeeeccCCCccc
Q 008820 438 TLVVSHESGSIKVWR--NDKFMKSMQTHKGSVFAV---FLEGKWLFT-GGWDK--TVSVQELAG-DEFEEDVIPTGAIPC 508 (552)
Q Consensus 438 ~l~~g~~dg~i~iwd--~~~~~~~~~~h~~~v~~v---~~~~~~l~s-gs~dg--~i~iwd~~~-~~~~~~~~~~~~~~~ 508 (552)
++++++.||.+++|. .......+..|...+..+ +++++.|+. ++.++ .+++|++.. +.....+..
T Consensus 350 ~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~------ 423 (741)
T 2ecf_A 350 ILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK------ 423 (741)
T ss_dssp EEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC------
T ss_pred EEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc------
Confidence 999999999877775 322266777777777654 448887754 55555 899999863 322222222
Q ss_pred CcceEEEEEeCC--eEEEE-eCC---CeEEEEEec
Q 008820 509 GSVITALLYWQG--KLFVG-CAD---RTVKIALCN 537 (552)
Q Consensus 509 ~~~v~~l~~~~~--~l~s~-s~D---g~v~iw~~~ 537 (552)
...+.+++|+++ .++.. +.. +.+.+|+..
T Consensus 424 ~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 424 APGMHSASFARNASVYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence 344778999953 34443 332 467777764
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.9e-17 Score=173.19 Aligned_cols=275 Identities=8% Similarity=0.039 Sum_probs=186.0
Q ss_pred cceEEEEEc-CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCC-----CC
Q 008820 253 DCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF-----PL 326 (552)
Q Consensus 253 ~~V~~l~~s-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~ 326 (552)
..|.+++|+ .+.++.+ .|++|++||+.+++... +..+...+.+++|+|++..+ +++ .|+.|++||+.+ +.
T Consensus 82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~l-a~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRV-AYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEE-EEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCCCeEEEE-ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEE-EEE-ECCeEEEEecCcccccCCC
Confidence 469999999 5555555 46999999999887654 44567788999999988754 443 679999999987 54
Q ss_pred CCccccccccCC---------CceeeeEEEEeeCCCEEEEee---------------------------------CCCcE
Q 008820 327 GHEPLKKWNEEK---------DWRYSGIHALTTSGRYLYTGS---------------------------------GDRTI 364 (552)
Q Consensus 327 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~sgs---------------------------------~dg~i 364 (552)
............ .........++|||++|++++ .+..|
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 332211111100 000013457999999999887 45679
Q ss_pred EEEECCCCceeEEec--CCCCCeEEEEEe-CC-EEEEEeCCC-----cEEEEECCCCceeEEEe-cCCCCce--EEEEEE
Q 008820 365 KAWSLLDGTLSCTMS--GHKSAVSTLAVC-NG-VLYSGSRDG-----TIRLWSLSDHSLLTVLE-EDSSGAV--SSVLSL 432 (552)
Q Consensus 365 ~iwd~~~~~~~~~~~--~h~~~v~~l~~~-~~-~l~s~~~dg-----~i~iwd~~~~~~~~~~~-~~~~~~~--~~~~~~ 432 (552)
++||+.+++...... .|...+.+++|+ ++ .|++++.|+ .|++||+.+++....+. ....... ...+.|
T Consensus 238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~ 317 (706)
T 2z3z_A 238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTF 317 (706)
T ss_dssp EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEE
T ss_pred EEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCcee
Confidence 999999887655442 467789999999 44 788877775 89999999984433332 2211111 122589
Q ss_pred cC--CCCEEEEEECCCcEEEEeC---CcceeeeecccceEEE-EEe--cCCEEEEEeC-CC----eEEEEecCCCeeeee
Q 008820 433 TA--VQHTLVVSHESGSIKVWRN---DKFMKSMQTHKGSVFA-VFL--EGKWLFTGGW-DK----TVSVQELAGDEFEED 499 (552)
Q Consensus 433 s~--~~~~l~~g~~dg~i~iwd~---~~~~~~~~~h~~~v~~-v~~--~~~~l~sgs~-dg----~i~iwd~~~~~~~~~ 499 (552)
+| +|+++++++.||.+++|+. ++....+..|...+.+ +.| +++.|+.++. ++ .|..||+.++.....
T Consensus 318 sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l 397 (706)
T 2z3z_A 318 LPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDL 397 (706)
T ss_dssp CTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEES
T ss_pred ecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceec
Confidence 99 9999999999999999863 3456677777776755 444 8887766554 44 677777776643222
Q ss_pred eccCCCcccCcceEEEEEeCC--eEEEE-eCC---CeEEEEEecC
Q 008820 500 VIPTGAIPCGSVITALLYWQG--KLFVG-CAD---RTVKIALCNR 538 (552)
Q Consensus 500 ~~~~~~~~~~~~v~~l~~~~~--~l~s~-s~D---g~v~iw~~~~ 538 (552)
. +...+.+++|+++ .++.+ +.+ +.|++|+++.
T Consensus 398 -~------~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 398 -T------PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp -C------CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred -c------CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 1 1445888999953 35554 333 5699999874
|
| >4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-20 Score=177.53 Aligned_cols=111 Identities=19% Similarity=0.214 Sum_probs=80.6
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+|+.+..........+++|||.|||||++. | ..+++++|||||||+|||||||+ ||
T Consensus 170 ~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl~------~---------~~y~~~~DiWSlGvilyeml~G~~PF 234 (311)
T 4aw0_A 170 HIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLT------E---------KSACKSSDLWALGCIIYQLVAGLPPF 234 (311)
T ss_dssp CEEECCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHHH------H---------SCBCHHHHHHHHHHHHHHHHHSSCSS
T ss_pred CEEEEEcCCceecCCCCCcccccCcccCcccCCHHHHc------C---------CCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence 45666 8898886554444577899999999999993 2 45678999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVW 159 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~ 159 (552)
.+.+...+ ...+.......+....+++.+++.+||++||.+||++.++.
T Consensus 235 ~~~~~~~~---------------------~~~i~~~~~~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 235 RAGNEGLI---------------------FAKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp CCSSHHHH---------------------HHHHHHTCCCCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred CCCCHHHH---------------------HHHHHcCCCCCCcccCHHHHHHHHHHccCCHhHCcChHHHc
Confidence 77554422 11111111111223455699999999999999999988753
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-17 Score=157.68 Aligned_cols=248 Identities=12% Similarity=0.113 Sum_probs=166.8
Q ss_pred EEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCC-CCCCccccccccCCCceeeeE
Q 008820 267 SSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF-PLGHEPLKKWNEEKDWRYSGI 345 (552)
Q Consensus 267 s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~ 345 (552)
+++.|++|++||+.+++... +..|...|.+++|+|++. ++++++ ++.|++||+.+ +........ +.. .....
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~~~~---~~~-~~~~~ 89 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKVDTG---FAT-ICNND 89 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEECCCT---TCC-CBCSC
T ss_pred CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEeccc---ccc-ccccc
Confidence 35678999999999988764 455889999999999877 445554 88999999987 543322211 111 11123
Q ss_pred EEEeeCCCEEEEee--CCCcEEEE--ECCCCceeEEecCCCCCeEEEEEe-CC-EEE-EEeCCCcEEEEECCC-CceeEE
Q 008820 346 HALTTSGRYLYTGS--GDRTIKAW--SLLDGTLSCTMSGHKSAVSTLAVC-NG-VLY-SGSRDGTIRLWSLSD-HSLLTV 417 (552)
Q Consensus 346 ~~~~~~~~~l~sgs--~dg~i~iw--d~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~-s~~~dg~i~iwd~~~-~~~~~~ 417 (552)
.+++++++.+++++ .++...+| +..+++ ...+..+. .+.+++|+ ++ .++ +++.|+.+++|++.. +.....
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~ 167 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR 167 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE
Confidence 57899999999988 33445555 555554 34444333 48899999 33 555 788999999998642 223333
Q ss_pred EecCCCCceEEEEEEcCCCCEEEEEE-CCCcEEEEeC---CcceeeeecccceEEEEEe--cCCEEEEEeCC--------
Q 008820 418 LEEDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRN---DKFMKSMQTHKGSVFAVFL--EGKWLFTGGWD-------- 483 (552)
Q Consensus 418 ~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~---~~~~~~~~~h~~~v~~v~~--~~~~l~sgs~d-------- 483 (552)
+..+ ...+.. +.|+|+++.+++++ .++.+++|+. ......+..|...+.++.| ++++|++++.+
T Consensus 168 ~~~~-~~~~~~-~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 168 LTHG-EGRNDG-PDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp CCCS-SSCEEE-EEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred cccC-CCcccc-ceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence 3333 333444 69999999888766 5889999974 3456677778888877776 89999888766
Q ss_pred ---CeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEEeCC
Q 008820 484 ---KTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCAD 528 (552)
Q Consensus 484 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~D 528 (552)
+.|++||+.+++......... +...+..++|+|+ .|++++.|
T Consensus 246 ~~~~~l~~~d~~~~~~~~~~~~~~---~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNVETLFDLFG---GQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp SEEEEEEEEETTSCSCEEEEEEEE---STTTSCSCCBCTTSSEEEEEEEC
T ss_pred cCceEEEEEecCCCCceeeeccCC---CCcccccceECCCCCEEEEEEec
Confidence 569999998876543322111 1445777889853 46666654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-17 Score=173.18 Aligned_cols=260 Identities=14% Similarity=0.109 Sum_probs=178.5
Q ss_pred ccceEEEEEc--CCEEEEEeC-CCcEEEEeCCCCeEEEEEeCCC-CCeEEEEEecCCCCEEEEEcC---CCcEEEEeCCC
Q 008820 252 RDCVTGLAVG--GGFLFSSSF-DKSIHVWSLKDFSHVHTFKGHD-HKVMAVVYVDEDQPLCISGDS---GGGIFVWSFSF 324 (552)
Q Consensus 252 ~~~V~~l~~s--~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~l~s~~~---dg~i~vwd~~~ 324 (552)
..+|.+++|+ |++||+++. ||+++||++++++..+ +..|. ..+..++|+|+ .++++++. +...++|.++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC--eEEEEeccCCCCcceEEEEEec
Confidence 4579999998 899999887 9999999997766554 44444 68999999987 57777665 56667776654
Q ss_pred --CCCCccccccccCCCceeeeEEEEeeCCC-EEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEe
Q 008820 325 --PLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGS 399 (552)
Q Consensus 325 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~ 399 (552)
......+.. ... ..+.+++++++ .+++.+.++.+.+||+.+++.......+. .+++|+ +..+++++
T Consensus 98 ~~~g~~~~l~~---~~~---~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~ 168 (582)
T 3o4h_A 98 SRPGEEQRLEA---VKP---MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLG 168 (582)
T ss_dssp TSTTCCEECTT---SCS---BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEE
T ss_pred cCCCccccccC---CCC---ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEE
Confidence 222222211 111 12458899987 33444444556699999887765554333 788888 44888777
Q ss_pred CC----CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCC--cEEEEeCCc-ceeeeecccceEEE---
Q 008820 400 RD----GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG--SIKVWRNDK-FMKSMQTHKGSVFA--- 469 (552)
Q Consensus 400 ~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg--~i~iwd~~~-~~~~~~~h~~~v~~--- 469 (552)
.| +.|++||+.+++.. .+..+ .+.... .+|+|||+.|+++..++ .|++||... ....+..|...+..
T Consensus 169 ~~~~~~~~i~~~d~~~g~~~-~l~~~-~~~~~~-~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 245 (582)
T 3o4h_A 169 FFGGGRVSLFTSNLSSGGLR-VFDSG-EGSFSS-ASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRP 245 (582)
T ss_dssp EEETTEEEEEEEETTTCCCE-EECCS-SCEEEE-EEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCC
T ss_pred EcCCCCeEEEEEcCCCCCce-EeecC-CCcccc-ceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhh
Confidence 77 78999999988765 44433 344444 79999999999888888 899999653 22255566554433
Q ss_pred -------EEecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCe-EEEEeCCCe---EEEEEe
Q 008820 470 -------VFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK-LFVGCADRT---VKIALC 536 (552)
Q Consensus 470 -------v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~s~s~Dg~---v~iw~~ 536 (552)
+++||..+++++.|+.+++|++ ++... .. ...+.+++|+++. +++++.+.. +.+|+.
T Consensus 246 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~------~~~v~~~~~sdg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 246 TAITWLGYLPDGRLAVVARREGRSAVFID--GERVE--AP------QGNHGRVVLWRGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp SEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC--CC------SSEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred ccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec--cC------CCceEEEEecCCEEEEEEcCCCCCCeEEEEcC
Confidence 4558889999999999999999 44332 11 3457888888665 666666643 444544
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.7e-17 Score=158.36 Aligned_cols=271 Identities=10% Similarity=0.085 Sum_probs=179.3
Q ss_pred EEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCC-CCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcccccc
Q 008820 258 LAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHD-HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKW 334 (552)
Q Consensus 258 l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 334 (552)
++++ +.++++++.+++|++||..+++.+..+..+. ..+..++|+|++..+++++..++.|.+||+.+++....+...
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence 3444 6788999999999999999999998887554 257889999988777778888999999999876433322211
Q ss_pred ccCC-CceeeeEEEEeeCCCEEEEeeCC------------CcEEEEECCCCce---eEEecCCCCCeEEEEEe-CCEEEE
Q 008820 335 NEEK-DWRYSGIHALTTSGRYLYTGSGD------------RTIKAWSLLDGTL---SCTMSGHKSAVSTLAVC-NGVLYS 397 (552)
Q Consensus 335 ~~~~-~~~~~~~~~~~~~~~~l~sgs~d------------g~i~iwd~~~~~~---~~~~~~h~~~v~~l~~~-~~~l~s 397 (552)
.... ........+++++++++++++.+ +.|.+||+.+++. +..+. +...+.+++|+ ++.+++
T Consensus 85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~l~~ 163 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGSLYV 163 (349)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSCEEE
T ss_pred cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCcEEE
Confidence 1000 00111235789999999988865 8999999988543 33444 33468899998 444555
Q ss_pred EeCCCcEEEEECCCCceeEEEecCCCCc----------------------eEEEEEEcCCCC-----------EEEEEEC
Q 008820 398 GSRDGTIRLWSLSDHSLLTVLEEDSSGA----------------------VSSVLSLTAVQH-----------TLVVSHE 444 (552)
Q Consensus 398 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------------------~~~~~~~s~~~~-----------~l~~g~~ 444 (552)
++ +.|++||+.+++.+..+....... ....+.+++++. ++.....
T Consensus 164 ~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 241 (349)
T 1jmx_B 164 AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 241 (349)
T ss_dssp ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEecc
Confidence 54 349999999999887775432100 111134443331 1122334
Q ss_pred CCcEEEEeCCcceeeeecccceEE--EEEe-cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--
Q 008820 445 SGSIKVWRNDKFMKSMQTHKGSVF--AVFL-EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-- 519 (552)
Q Consensus 445 dg~i~iwd~~~~~~~~~~h~~~v~--~v~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-- 519 (552)
++.+++|+... +...+. ++++ ++++++++ ++.|++||+.+++....... ...+.+++|++
T Consensus 242 ~~~~~~~~~~~-------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg 306 (349)
T 1jmx_B 242 TGKTHTQEFAD-------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL------DHTYYCVAFDKKG 306 (349)
T ss_dssp TCCEEEEEEEE-------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC------SSCCCEEEECSSS
T ss_pred CCcEEeccccc-------CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC------CCCccceEECCCC
Confidence 45555555421 233333 4456 88899888 88999999998877655443 22356889985
Q ss_pred CeEEEEeCCCeEEEEEecCCcceeEEEe
Q 008820 520 GKLFVGCADRTVKIALCNRQIPEIFSLL 547 (552)
Q Consensus 520 ~~l~s~s~Dg~v~iw~~~~~~~~~~~~~ 547 (552)
+.|++++.++.|++||.+ +.+.+.++.
T Consensus 307 ~~l~~~~~~~~v~v~d~~-~~~~~~~~~ 333 (349)
T 1jmx_B 307 DKLYLGGTFNDLAVFNPD-TLEKVKNIK 333 (349)
T ss_dssp SCEEEESBSSEEEEEETT-TTEEEEEEE
T ss_pred CEEEEecCCCeEEEEecc-ccceeeeee
Confidence 358888889999999997 455555554
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-16 Score=176.45 Aligned_cols=310 Identities=13% Similarity=0.071 Sum_probs=213.9
Q ss_pred ccccceeeecCcceEEEeeCC----C--eEEEE--------EeecCccce-------EEEEEc--CCEEEEEeCC-----
Q 008820 220 ADIDQARAAGGVKDLVNGLSK----G--NVKFK--------DLQGHRDCV-------TGLAVG--GGFLFSSSFD----- 271 (552)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~----~--~~~~~--------~l~~H~~~V-------~~l~~s--~~~l~s~s~d----- 271 (552)
..+....++++++.++....+ + .+.+| .+.+|...+ .+++|+ |+.+++++.+
T Consensus 53 ~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~ 132 (1045)
T 1k32_A 53 GVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSS 132 (1045)
T ss_dssp SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTT
T ss_pred CcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcc
Confidence 346677778888777765432 2 34444 356788888 999999 7777777754
Q ss_pred -CcEEEEeCCCCeEE-------------------------------------------------EEEeCCCCCeEEEEEe
Q 008820 272 -KSIHVWSLKDFSHV-------------------------------------------------HTFKGHDHKVMAVVYV 301 (552)
Q Consensus 272 -g~I~iwd~~~~~~~-------------------------------------------------~~~~~h~~~v~~v~~~ 301 (552)
..|.+||+.+++.. ..+.+|...+.++.|+
T Consensus 133 ~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s 212 (1045)
T 1k32_A 133 MTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIV 212 (1045)
T ss_dssp CCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEE
T ss_pred cceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEe
Confidence 35777777655422 2235677888889998
Q ss_pred cCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecC-
Q 008820 302 DEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSG- 380 (552)
Q Consensus 302 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~- 380 (552)
++ .++++++.|+.+.+|.++.... ....+..+.. ....+++++|+.++++ .++.|++||+...+ +..+.+
T Consensus 213 ~d--~l~~~~~~dg~~~l~~~~~~g~--~~~~l~~~~~---~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~ 283 (1045)
T 1k32_A 213 GH--RIYFITDIDGFGQIYSTDLDGK--DLRKHTSFTD---YYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIG 283 (1045)
T ss_dssp TT--EEEEEECTTSSCEEEEEETTSC--SCEECCCCCS---SCEEEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCCC
T ss_pred CC--EEEEEEeccCceEEEEEeCCCC--cceEecCCCC---cceeeEcCCCCEEEEE-eCCEEEEecCCceE-eeeeccC
Confidence 75 5777888899999998764221 1112222221 1234889999988887 48999999995443 335554
Q ss_pred ----------CCCCeEEEEEe-CC--EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCc
Q 008820 381 ----------HKSAVSTLAVC-NG--VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGS 447 (552)
Q Consensus 381 ----------h~~~v~~l~~~-~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 447 (552)
|...+.+++|+ ++ .+++++ ++.|++|++.+++... +..+ .......+.|+ +++.++.++.++.
T Consensus 284 ~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~-~~~~~~~~~~s-dg~~l~~~s~~~~ 359 (1045)
T 1k32_A 284 DLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEP-LRIRYVRRGGD-TKVAFIHGTREGD 359 (1045)
T ss_dssp CCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCC-SCEEEEEECSS-SEEEEEEEETTEE
T ss_pred cccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCC-CcceEEeeeEc-CCCeEEEEECCCc
Confidence 33468999998 55 677766 8899999998876543 3332 33123336889 9999999998888
Q ss_pred EE-EEeCCc-ceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--e
Q 008820 448 IK-VWRNDK-FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--K 521 (552)
Q Consensus 448 i~-iwd~~~-~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~ 521 (552)
+. +||... ....+.+|...+..+.| ||++|++++.++.|++||+.+++....... +...+.+++|+|+ .
T Consensus 360 l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~-----~~~~v~~~~~SpDG~~ 434 (1045)
T 1k32_A 360 FLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS-----REAMITDFTISDNSRF 434 (1045)
T ss_dssp EEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-----SSSCCCCEEECTTSCE
T ss_pred eEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC-----CCCCccceEECCCCCe
Confidence 88 888643 33445577777877776 999999999999999999998876655422 2456788999953 4
Q ss_pred EEEEeCCC----------eEEEEEecCCcceeEEEecc
Q 008820 522 LFVGCADR----------TVKIALCNRQIPEIFSLLLH 549 (552)
Q Consensus 522 l~s~s~Dg----------~v~iw~~~~~~~~~~~~~gh 549 (552)
|++++.++ .|++||+.. .. +..+.+|
T Consensus 435 la~~~~~~~~~~~~~~~~~i~l~d~~~-g~-~~~l~~~ 470 (1045)
T 1k32_A 435 IAYGFPLKHGETDGYVMQAIHVYDMEG-RK-IFAATTE 470 (1045)
T ss_dssp EEEEEEECSSTTCSCCEEEEEEEETTT-TE-EEECSCS
T ss_pred EEEEecCccccccCCCCCeEEEEECCC-Cc-EEEeeCC
Confidence 77766544 999999873 22 5555544
|
| >3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-20 Score=175.89 Aligned_cols=125 Identities=17% Similarity=0.221 Sum_probs=78.1
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p 88 (552)
-.+|++ |+|+.+........++..+|||.|||||++ .+ ...+.++.+||||||||+||||+||+ |
T Consensus 169 ~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l------~~------~~~~~y~~ksDVwS~Gvvl~Elltg~~P 236 (307)
T 3omv_A 169 LTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVI------RM------QDNNPFSFQSDVYSYGIVLYELMTGELP 236 (307)
T ss_dssp EEEEECCCSSCBC------------CCCCTTSCCHHHH------HC------CSSCCCCHHHHHHHHHHHHHHHHHSSCT
T ss_pred CcEEEeeccCceecccCCcceeecccccCCCccCHHHh------hc------cCCCCCCcHHHhHhHHHHHHHHHHCCCC
Confidence 457888 888777654443446788999999999999 22 01245788999999999999999999 9
Q ss_pred chHHHhh-hhhhccccCCCchhhhhhhhHHHHHHH-HHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 89 FTKELID-YIRCVSTKASDDNIACLGMYMAWMEKV-TYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 89 f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
|...+.. .+. ....... ...+.......+.++.+++.+|++.+|.+||++.++.+.+..+
T Consensus 237 f~~~~~~~~~~-----------------~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l 298 (307)
T 3omv_A 237 YSHINNRDQII-----------------FMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELL 298 (307)
T ss_dssp TTTCCCHHHHH-----------------HHHHTTCCCCCSTTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHH
T ss_pred CCCCChHHHHH-----------------HHHhcCCCCCCcccccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 9753322 110 0000000 0000111122344689999999999999999999998877654
|
| >4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-19 Score=174.85 Aligned_cols=122 Identities=15% Similarity=0.148 Sum_probs=79.0
Q ss_pred hhhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC
Q 008820 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (552)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~ 87 (552)
.-.+|++ |+|+.+...+.....+..+|||.|||||++ . ...++.++|||||||+||||+| |+
T Consensus 194 ~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~------~---------~~~~~~~sDvwS~Gvvl~Ellt~G~ 258 (329)
T 4aoj_A 194 GLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESI------L---------YRKFTTESDVWSFGVVLWEIFTYGK 258 (329)
T ss_dssp TTEEEECCCC----------------CCCCGGGCCHHHH------T---------TCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CCcEEEcccccceeccCCCcceecCcccccccccChhhh------c---------CCCCCccccccchHHHHHHHHcCCC
Confidence 4468888 888887766655456788999999999999 3 3667899999999999999999 89
Q ss_pred -CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
||...+...+. ..+..- ..+.+...++++.+++.+|++.+|.+||++.++.+.+..+
T Consensus 259 ~Pf~~~~~~~~~---------------------~~i~~g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l 317 (329)
T 4aoj_A 259 QPWYQLSNTEAI---------------------DCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQAL 317 (329)
T ss_dssp CTTCSSCHHHHH---------------------HHHHHTCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHH---------------------HHHHcCCCCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence 99764333111 111000 0111223455699999999999999999999999988887
Q ss_pred hcC
Q 008820 166 IIK 168 (552)
Q Consensus 166 ~~~ 168 (552)
...
T Consensus 318 ~~~ 320 (329)
T 4aoj_A 318 AQA 320 (329)
T ss_dssp HHS
T ss_pred hhC
Confidence 643
|
| >4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.9e-20 Score=175.56 Aligned_cols=120 Identities=15% Similarity=0.169 Sum_probs=81.1
Q ss_pred hhcc--cccccccccchh---hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-
Q 008820 14 AKVG--CVGSRICDKEVG---LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~---~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~- 87 (552)
+|+. |+|+.+...... .-...++|||.|||||++ .| ..+++++|||||||+|||||||+
T Consensus 190 vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~------~~---------~~y~~~~DiwSlGvilyemltG~~ 254 (336)
T 4g3f_A 190 AALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVV------MG---------KPCDAKVDIWSSCCMMLHMLNGCH 254 (336)
T ss_dssp EEECCCTTCEEC------------CCCCCCGGGCCHHHH------TT---------CCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred EEEeeCCCCeEccCCCcccceecCCccccCccccCHHHH------CC---------CCCCcHHHHHHHHHHHHHHHHCcC
Confidence 5777 888877654332 113457899999999999 33 56789999999999999999999
Q ss_pred CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
||.+.+...+. ..+....+. ....+....+.+.+++.+||+++|.+||++.++.+.+...+
T Consensus 255 Pf~~~~~~~~~-----------------~~i~~~~~~-~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l 315 (336)
T 4g3f_A 255 PWTQYFRGPLC-----------------LKIASEPPP-IREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKAL 315 (336)
T ss_dssp SSTTTCCSCCH-----------------HHHHHSCCG-GGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHH-----------------HHHHcCCCC-chhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHH
Confidence 99775433211 111111000 01112234556999999999999999999999988877654
|
| >3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A | Back alignment and structure |
|---|
Probab=99.77 E-value=9e-20 Score=170.16 Aligned_cols=110 Identities=19% Similarity=0.248 Sum_probs=68.0
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
-.|+. |+|+....... ...++|||.|||||++ .| ....++++|||||||+||||+||+ ||
T Consensus 150 ~vkl~DFGla~~~~~~~~---~~~~~GT~~Y~APE~~------~~--------~~y~~~~~DiwSlGvily~lltg~~PF 212 (275)
T 3hyh_A 150 NVKIADFGLSNIMTDGNF---LKTSCGSPNYAAPEVI------SG--------KLYAGPEVDVWSCGVILYVMLCRRLPF 212 (275)
T ss_dssp CEEECCSSCC------------------CTTSCHHHH------SS--------SSCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred CEEEeecCCCeecCCCCc---cCCeeECcccCChhhh------cC--------CCCCCChhhhHHHHHHHHHHHHCCCCC
Confidence 35666 78877665543 5678999999999999 33 223467999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+.+...+ ...+.......+.....++.+++.+||+.+|.+||++.++.+
T Consensus 213 ~~~~~~~~---------------------~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 262 (275)
T 3hyh_A 213 DDESIPVL---------------------FKNISNGVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp CCSSHHHH---------------------HHHHHHTCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred CCCCHHHH---------------------HHHHHcCCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence 77554421 111111111112224456999999999999999999888765
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.6e-16 Score=152.62 Aligned_cols=256 Identities=13% Similarity=0.121 Sum_probs=166.8
Q ss_pred CeEEEEEeecCccceEEEEEc--CCEEEEEeC---CCcEEEEeCCCCe--EEEEEeCCCCCeEEEEEecCCCCEEEEEcC
Q 008820 241 GNVKFKDLQGHRDCVTGLAVG--GGFLFSSSF---DKSIHVWSLKDFS--HVHTFKGHDHKVMAVVYVDEDQPLCISGDS 313 (552)
Q Consensus 241 ~~~~~~~l~~H~~~V~~l~~s--~~~l~s~s~---dg~I~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~ 313 (552)
+.........+...+..++|+ ++ +++++. ++.|++||+.+++ .+..+..+...+..++|+|++..+++++..
T Consensus 28 g~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~ 106 (347)
T 3hfq_A 28 KTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYH 106 (347)
T ss_dssp TEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETT
T ss_pred CeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCC
Confidence 444444445566778889999 66 665554 6899999998776 445555677888999999988866666668
Q ss_pred CCcEEEEeCCCCCCCccccccccCC-------CceeeeEEEEeeCCCEEEEeeCCCcEEEEECC-CCceeE--EecC-CC
Q 008820 314 GGGIFVWSFSFPLGHEPLKKWNEEK-------DWRYSGIHALTTSGRYLYTGSGDRTIKAWSLL-DGTLSC--TMSG-HK 382 (552)
Q Consensus 314 dg~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~-~~~~~~--~~~~-h~ 382 (552)
++.|.+|++........+....... ........+++|+++.+++...++.|.+||+. +++... .+.. ..
T Consensus 107 ~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g 186 (347)
T 3hfq_A 107 KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG 186 (347)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT
T ss_pred CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC
Confidence 8999999996433222222221110 00112235789999966666778899999998 554332 2222 23
Q ss_pred CCeEEEEEe-CC-EEEE-EeCCCcEEEEECCC--Cce--eEEEecCCCC----ceEEEEEEcCCCCEEE-EEECCCcEEE
Q 008820 383 SAVSTLAVC-NG-VLYS-GSRDGTIRLWSLSD--HSL--LTVLEEDSSG----AVSSVLSLTAVQHTLV-VSHESGSIKV 450 (552)
Q Consensus 383 ~~v~~l~~~-~~-~l~s-~~~dg~i~iwd~~~--~~~--~~~~~~~~~~----~~~~~~~~s~~~~~l~-~g~~dg~i~i 450 (552)
..+..++|+ ++ ++++ +..++.|.+|++.. ++. +..+.....+ .....++|+|+|++|+ +...++.|.+
T Consensus 187 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v 266 (347)
T 3hfq_A 187 FGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAV 266 (347)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEE
T ss_pred CCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEE
Confidence 367889999 44 4554 56789999999874 443 2233322111 2234479999999875 5556899999
Q ss_pred EeCC-----cceeeeecccceEEEEEe--cCCEEEEEeCC-CeEEEEec--CCCeee
Q 008820 451 WRND-----KFMKSMQTHKGSVFAVFL--EGKWLFTGGWD-KTVSVQEL--AGDEFE 497 (552)
Q Consensus 451 wd~~-----~~~~~~~~h~~~v~~v~~--~~~~l~sgs~d-g~i~iwd~--~~~~~~ 497 (552)
||+. +.+..+..+...+..+.+ +|++|++++.+ +.|.+|++ .++++.
T Consensus 267 ~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 267 FAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 9965 233444455445555555 89988888765 89999954 455544
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-16 Score=170.36 Aligned_cols=268 Identities=9% Similarity=-0.004 Sum_probs=173.8
Q ss_pred eecCcc---ceEEEEEc--CCEEEEEeCC---------CcEEEEeCCCCeEEEEEe---CCCCCeEEEEEecCCCCEEEE
Q 008820 248 LQGHRD---CVTGLAVG--GGFLFSSSFD---------KSIHVWSLKDFSHVHTFK---GHDHKVMAVVYVDEDQPLCIS 310 (552)
Q Consensus 248 l~~H~~---~V~~l~~s--~~~l~s~s~d---------g~I~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~~~~~l~s 310 (552)
+.+|.. .|.+++|+ |++|++++.+ +.|++||+.+++. ..+. +|...+..++|+|++..++ .
T Consensus 53 ~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la-~ 130 (723)
T 1xfd_A 53 IEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLI-F 130 (723)
T ss_dssp ECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEE-E
T ss_pred eccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEE-E
Confidence 445554 49999999 9999999875 7788999998876 3343 3445588999999887654 4
Q ss_pred EcCCCcEEEEeCCCCCCCccccccccCC------C-------ceeeeEEEEeeCCCEEEEeeCCC---------------
Q 008820 311 GDSGGGIFVWSFSFPLGHEPLKKWNEEK------D-------WRYSGIHALTTSGRYLYTGSGDR--------------- 362 (552)
Q Consensus 311 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~------~-------~~~~~~~~~~~~~~~l~sgs~dg--------------- 362 (552)
++. +.|++||+.++............. . .......+|+|||+.|++++.|+
T Consensus 131 ~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~ 209 (723)
T 1xfd_A 131 IFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI 209 (723)
T ss_dssp EET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS
T ss_pred EEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcC
Confidence 443 799999998764432221111000 0 00012468999999998887553
Q ss_pred -------------------cEEEEECCCCceeEEecCC------CCCeEEEEEe-CC-EEEEEeC----CCcEEEEECCC
Q 008820 363 -------------------TIKAWSLLDGTLSCTMSGH------KSAVSTLAVC-NG-VLYSGSR----DGTIRLWSLSD 411 (552)
Q Consensus 363 -------------------~i~iwd~~~~~~~~~~~~h------~~~v~~l~~~-~~-~l~s~~~----dg~i~iwd~~~ 411 (552)
.|++||+.+++....+..+ ...+.+++|+ ++ ++++.+. +..|++||+.+
T Consensus 210 ~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~ 289 (723)
T 1xfd_A 210 YPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT 289 (723)
T ss_dssp SCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT
T ss_pred CCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC
Confidence 7999999988876666654 5678999999 55 5555543 35799999999
Q ss_pred CceeEEEecCCCCceE---EEEEEcCCCCEEEE--EECCC------cEEEEe-CC-cc---eeeeecccceEE---EEEe
Q 008820 412 HSLLTVLEEDSSGAVS---SVLSLTAVQHTLVV--SHESG------SIKVWR-ND-KF---MKSMQTHKGSVF---AVFL 472 (552)
Q Consensus 412 ~~~~~~~~~~~~~~~~---~~~~~s~~~~~l~~--g~~dg------~i~iwd-~~-~~---~~~~~~h~~~v~---~v~~ 472 (552)
++....+..++.+.+. ....|+|||+.|+. +..++ .|++|| .. .. ...+..+...+. ++++
T Consensus 290 g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp 369 (723)
T 1xfd_A 290 GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE 369 (723)
T ss_dssp CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET
T ss_pred CcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC
Confidence 9877666543323221 12589999997765 45666 577787 32 23 455554333333 4556
Q ss_pred cCCEEEEEeCC---CeEEEEecCCCe--eeeeeccCCCcccCcceEEEEEeCC
Q 008820 473 EGKWLFTGGWD---KTVSVQELAGDE--FEEDVIPTGAIPCGSVITALLYWQG 520 (552)
Q Consensus 473 ~~~~l~sgs~d---g~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~l~~~~~ 520 (552)
||+.|+..+.+ +.+++|++.... ....+.. ...+...+..++|+++
T Consensus 370 dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~spd 420 (723)
T 1xfd_A 370 KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSC--DLVENCTYFSASFSHS 420 (723)
T ss_dssp TTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSST--TSSSSCCCCEEEECTT
T ss_pred CCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecc--cccCCCCeEEEEECCC
Confidence 99999876655 789999986432 1111111 0012445778899953
|
| >4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=9.2e-20 Score=175.49 Aligned_cols=110 Identities=16% Similarity=0.262 Sum_probs=80.1
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|++ |+|+.+..... ..+.++|||.|||||++ .| ..+++++|||||||+||||+||+ ||
T Consensus 163 ~vKl~DFGla~~~~~~~~--~~~~~~GT~~YmAPE~l------~~---------~~y~~~~DiwSlGvilyemltG~~PF 225 (350)
T 4b9d_A 163 TVQLGDFGIARVLNSTVE--LARACIGTPYYLSPEIC------EN---------KPYNNKSDIWALGCVLYELCTLKHAF 225 (350)
T ss_dssp CEEECSTTEESCCCHHHH--HHHHHHSCCTTCCHHHH------TT---------CCCCHHHHHHHHHHHHHHHHHSSCSC
T ss_pred CEEEcccccceeecCCcc--cccccCCCccccCHHHH------CC---------CCCCcHHHHHHHHHHHHHHHHCCCCC
Confidence 45777 88887765533 36788999999999999 33 56789999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+.+...+. ..+.... .........++.+++.+||+++|.+||++.++.+
T Consensus 226 ~~~~~~~~~---------------------~~i~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 226 EAGSMKNLV---------------------LKIISGSFPPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp CCSSHHHHH---------------------HHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCcCHHHHH---------------------HHHHcCCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 775544221 1111000 0111223456999999999999999999888755
|
| >3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-19 Score=170.58 Aligned_cols=109 Identities=14% Similarity=0.171 Sum_probs=75.3
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.+|++ |+|+..... ..+.++|||.|||||++ .+++++++|||||||+||||+||+ ||
T Consensus 170 ~vKl~DFGla~~~~~~----~~~~~~GTp~YmAPE~~----------------~~~y~~~~DiwSlGvilyelltg~~Pf 229 (290)
T 3fpq_A 170 SVKIGDLGLATLKRAS----FAKAVIGTPEFMAPEMY----------------EEKYDESVDVYAFGMCMLEMATSEYPY 229 (290)
T ss_dssp CEEECCTTGGGGCCTT----SBEESCSSCCCCCGGGG----------------GTCCCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred CEEEEeCcCCEeCCCC----ccCCcccCccccCHHHc----------------CCCCCcHHHHHHHHHHHHHHHHCCCCC
Confidence 46777 888654333 35678999999999998 235789999999999999999999 99
Q ss_pred hHHHh-hhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELI-DYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..... ..+. ..+.... .+........+++.+++.+||+++|.+||++.++.+
T Consensus 230 ~~~~~~~~~~-----------------~~i~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 230 SECQNAAQIY-----------------RRVTSGV--KPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp TTCSSHHHHH-----------------HHHTTTC--CCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCCCcHHHHH-----------------HHHHcCC--CCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 65321 1110 0000000 011112234456999999999999999999887654
|
| >4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-19 Score=171.82 Aligned_cols=113 Identities=14% Similarity=0.213 Sum_probs=79.1
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+|+.+..... ..+.++|||.|||||++ . ...+++++|||||||+||||+||+ ||
T Consensus 208 ~vKl~DFGla~~~~~~~~--~~~~~~GTp~YmAPEvl------~---------~~~y~~~~DiWSlGvilyeml~G~~PF 270 (346)
T 4fih_A 208 RVKLSDFGFCAQVSKEVP--RRKSLVGTPYWMAPELI------S---------RLPYGPEVDIWSLGIMVIEMVDGEPPY 270 (346)
T ss_dssp CEEECCCTTCEECCSSSC--CBCCCCSCGGGCCHHHH------T---------TCCBCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred CEEEecCcCceecCCCCC--cccccccCcCcCCHHHH------C---------CCCCCcHHHHHHHHHHHHHHHHCCCCC
Confidence 35777 88887765533 26789999999999999 2 356789999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+.+...+. ..+....+ .....+.....++.+++.+||++||.+||++.++.+
T Consensus 271 ~~~~~~~~~-----------------~~i~~~~~-~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 271 FNEPPLKAM-----------------KMIRDNLP-PRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp TTSCHHHHH-----------------HHHHHSSC-CCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCcCHHHHH-----------------HHHHcCCC-CCCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 765433111 11111000 000111223456999999999999999999877544
|
| >4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-19 Score=171.38 Aligned_cols=120 Identities=13% Similarity=0.202 Sum_probs=87.7
Q ss_pred hhhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC
Q 008820 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (552)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~ 87 (552)
.-.+|++ |+|+.+...+.........||+.|||||++. ...++.++|||||||+||||+| |+
T Consensus 164 ~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~---------------~~~~~~k~DVwS~Gvvl~Ellt~G~ 228 (299)
T 4asz_A 164 NLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIM---------------YRKFTTESDVWSLGVVLWEIFTYGK 228 (299)
T ss_dssp GGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCcEEECCcccceecCCCCceeecCceecChhhcCHHHHc---------------CCCCCchhhHHHHHHHHHHHHcCCC
Confidence 4468888 8888776665544456778999999999992 3567899999999999999999 89
Q ss_pred -CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
||.+.+..++. ..+..- ..+.+...+.++.+++.+|++.+|.+||++.++.+.+..+
T Consensus 229 ~Pf~~~~~~~~~---------------------~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~ 287 (299)
T 4asz_A 229 QPWYQLSNNEVI---------------------ECITQGRVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNL 287 (299)
T ss_dssp CTTTTSCHHHHH---------------------HHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHH---------------------HHHHcCCCCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 99764433221 111000 0111222445699999999999999999999998887776
Q ss_pred h
Q 008820 166 I 166 (552)
Q Consensus 166 ~ 166 (552)
.
T Consensus 288 ~ 288 (299)
T 4asz_A 288 A 288 (299)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.1e-16 Score=149.30 Aligned_cols=240 Identities=11% Similarity=0.051 Sum_probs=162.3
Q ss_pred EEeecCccceEEEEEc--CCEEEEEeC-CCcEEEEeCCCCeE-EEEEeCCCCCeEEEEEecCCCCEEEEEcCC-C--cEE
Q 008820 246 KDLQGHRDCVTGLAVG--GGFLFSSSF-DKSIHVWSLKDFSH-VHTFKGHDHKVMAVVYVDEDQPLCISGDSG-G--GIF 318 (552)
Q Consensus 246 ~~l~~H~~~V~~l~~s--~~~l~s~s~-dg~I~iwd~~~~~~-~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d-g--~i~ 318 (552)
..+..+...+ +++|+ ++++++++. ++.|.+||..+++. ...+..+..+..+++|+|++..++ ++..+ + .|.
T Consensus 34 ~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~ 111 (331)
T 3u4y_A 34 NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV-TVTGLNHPFNMQ 111 (331)
T ss_dssp EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEE-ECCCSSSSCEEE
T ss_pred eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEE-EecCCCCcccEE
Confidence 3344556666 99998 776666655 89999999999987 777777777766699999877554 55444 3 899
Q ss_pred EEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEE-EEeeCCCc-EEEEECCCCcee----EEecCCCCCeEEEEEe-
Q 008820 319 VWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYL-YTGSGDRT-IKAWSLLDGTLS----CTMSGHKSAVSTLAVC- 391 (552)
Q Consensus 319 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~sgs~dg~-i~iwd~~~~~~~----~~~~~h~~~v~~l~~~- 391 (552)
+||+.+++....+ ..... ....+++|+++++ ++...++. |.+|++.....+ ...........+++|+
T Consensus 112 v~d~~~~~~~~~~---~~~~~---~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp 185 (331)
T 3u4y_A 112 SYSFLKNKFISTI---PIPYD---AVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP 185 (331)
T ss_dssp EEETTTTEEEEEE---ECCTT---EEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT
T ss_pred EEECCCCCeEEEE---ECCCC---ccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC
Confidence 9999876443322 22211 1345789999854 45566688 999998754332 1222344567899999
Q ss_pred CC-EE-EEEeCCCcEEEEECCCCce---eEEEecCCCCceEEEEEEcCCCCEEEEEE-CCCcEEEEeCCcc----eeeee
Q 008820 392 NG-VL-YSGSRDGTIRLWSLSDHSL---LTVLEEDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRNDKF----MKSMQ 461 (552)
Q Consensus 392 ~~-~l-~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~----~~~~~ 461 (552)
++ ++ +++..++.|++||+.+++. +..+... ..... ++++|+|+++++++ .++.|.+||..+. +..+.
T Consensus 186 dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~--~~~~~-~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~ 262 (331)
T 3u4y_A 186 DGNFAFVANLIGNSIGILETQNPENITLLNAVGTN--NLPGT-IVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFG 262 (331)
T ss_dssp TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS--SCCCC-EEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEE
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC--CCCce-EEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccc
Confidence 44 45 4455689999999999988 7776643 22333 68999999777665 4788999996532 22222
Q ss_pred cc----cceE-----EEEEecCCEEEEEeC-CCeEEEEecCCCee
Q 008820 462 TH----KGSV-----FAVFLEGKWLFTGGW-DKTVSVQELAGDEF 496 (552)
Q Consensus 462 ~h----~~~v-----~~v~~~~~~l~sgs~-dg~i~iwd~~~~~~ 496 (552)
.+ .... .++++++++|++++. ++.|.+||+.+...
T Consensus 263 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 263 HGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp CCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred cccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 11 1111 355669998866554 67999999987644
|
| >3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-19 Score=170.71 Aligned_cols=106 Identities=14% Similarity=0.115 Sum_probs=73.6
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+|+.+.+.+.. ...++|||.|||||++ .+ ..+++++|||||||+||||+||+ ||
T Consensus 164 ~vKl~DFGla~~~~~~~~~--~~~~~GT~~YmAPE~~------~~---------~~y~~~~DiwSlGvilyemltG~~PF 226 (304)
T 3ubd_A 164 HIKLTDFGLSKESIDHEKK--AYSFCGTVEYMAPEVV------NR---------RGHTQSADWWSFGVLMFEMLTGTLPF 226 (304)
T ss_dssp CEEEESSEEEEC-----CC--CCSCCCCGGGCCHHHH------HT---------SCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred CEEecccccceeccCCCcc--ccccccCcccCCHHHh------cc---------CCCCCCCcccchHHHHHHHHhCCCCC
Confidence 35666 888776555432 6678999999999999 22 45778999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~ 156 (552)
.+.+...+. ..+.......+...++++.+++.+||+++|.+||++.
T Consensus 227 ~~~~~~~~~---------------------~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~ta~ 272 (304)
T 3ubd_A 227 QGKDRKETM---------------------TMILKAKLGMPQFLSPEAQSLLRMLFKRNPANRLGAG 272 (304)
T ss_dssp CCSSHHHHH---------------------HHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTCS
T ss_pred CCcCHHHHH---------------------HHHHcCCCCCCCcCCHHHHHHHHHHcccCHHHCCCCC
Confidence 775544221 1111111112223455699999999999999999964
|
| >4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-19 Score=169.92 Aligned_cols=120 Identities=15% Similarity=0.182 Sum_probs=88.1
Q ss_pred hhhhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-C
Q 008820 10 TKSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-G 86 (552)
Q Consensus 10 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g 86 (552)
+.-.+|++ |+|+.+...+.....+...||+.|||||++. .+.++.+||||||||+||||+| |
T Consensus 180 ~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~---------------~~~~s~ksDVwSfGvvl~El~t~g 244 (308)
T 4gt4_A 180 DKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIM---------------YGKFSIDSDIWSYGVVLWEVFSYG 244 (308)
T ss_dssp GGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHh---------------CCCCCccchhhhHHHHHHHHHhCC
Confidence 34568888 8888887766555577889999999999992 3567899999999999999999 8
Q ss_pred C-CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHh
Q 008820 87 E-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (552)
Q Consensus 87 ~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~ 164 (552)
+ ||.+.+...+. ..+... ..+.+...+.++.+++.+|++.+|.+||++.++.+.|+.
T Consensus 245 ~~Pf~~~~~~~~~---------------------~~i~~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a 303 (308)
T 4gt4_A 245 LQPYCGYSNQDVV---------------------EMIRNRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRA 303 (308)
T ss_dssp CCTTTTCCHHHHH---------------------HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred CCCCCCCCHHHHH---------------------HHHHcCCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHh
Confidence 9 99764433221 100000 001112234458999999999999999999999888765
Q ss_pred h
Q 008820 165 L 165 (552)
Q Consensus 165 ~ 165 (552)
+
T Consensus 304 ~ 304 (308)
T 4gt4_A 304 W 304 (308)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-15 Score=146.28 Aligned_cols=222 Identities=15% Similarity=0.155 Sum_probs=161.9
Q ss_pred cceEEEEEc--CCE-EEEEeCCCcEEEEeCCCCeEEEEEeCCCCC---------eEEEEEecCCCCEEEEE-cCCCcEEE
Q 008820 253 DCVTGLAVG--GGF-LFSSSFDKSIHVWSLKDFSHVHTFKGHDHK---------VMAVVYVDEDQPLCISG-DSGGGIFV 319 (552)
Q Consensus 253 ~~V~~l~~s--~~~-l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~---------v~~v~~~~~~~~~l~s~-~~dg~i~v 319 (552)
..+.+++|+ +++ +++...++.|.+||..+++.+..+..+... +.+++|+|+++.+++++ +.++.|.+
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV 168 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence 346678887 664 455566899999999999998888765432 78999999888666666 46889999
Q ss_pred EeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecC----CCCCeEEEEEe--CC
Q 008820 320 WSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSG----HKSAVSTLAVC--NG 393 (552)
Q Consensus 320 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~----h~~~v~~l~~~--~~ 393 (552)
||..+.+....+..... . ....+++++++.+++++.++.|.+||..+++....+.. +...+.+++|+ ++
T Consensus 169 ~d~~~~~~~~~~~~~~~----~-~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 243 (353)
T 3vgz_A 169 VDGGNIKLKTAIQNTGK----M-STGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ 243 (353)
T ss_dssp EETTTTEEEEEECCCCT----T-CCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT
T ss_pred EcCCCCceEEEecCCCC----c-cceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC
Confidence 99987654333321111 0 12247899999999999999999999999998887754 55668889999 34
Q ss_pred EEEEEe-CCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEE-CCCcEEEEeCCc--ceeeeecccceEEE
Q 008820 394 VLYSGS-RDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRNDK--FMKSMQTHKGSVFA 469 (552)
Q Consensus 394 ~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~--~~~~~~~h~~~v~~ 469 (552)
.+++++ .++.|.+||+.+++.+..+..... .. ++++|+++++++++ .++.|.+||..+ .+..+..+ ..+.+
T Consensus 244 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~-~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~ 318 (353)
T 3vgz_A 244 RAFITDSKAAEVLVVDTRNGNILAKVAAPES---LA-VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNS 318 (353)
T ss_dssp EEEEEESSSSEEEEEETTTCCEEEEEECSSC---CC-EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcEEEEEEcCCC---ce-EEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCe
Confidence 555555 459999999999998888876432 22 68999999766665 689999999653 44444443 34566
Q ss_pred EEe--cCCEEEEEeCCC
Q 008820 470 VFL--EGKWLFTGGWDK 484 (552)
Q Consensus 470 v~~--~~~~l~sgs~dg 484 (552)
+.+ +|++|+.+..++
T Consensus 319 ~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 319 LALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEECTTSCEEEEEEECC
T ss_pred EEEcCCCCEEEEEEccc
Confidence 665 888777766554
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-16 Score=172.99 Aligned_cols=266 Identities=9% Similarity=0.053 Sum_probs=169.2
Q ss_pred eEEEEEcCCEEEEEeCCCcEEEEeCCCCeEE-EEEeCCC-----------------CCeEEEEEecCCCCEEEEEcCCCc
Q 008820 255 VTGLAVGGGFLFSSSFDKSIHVWSLKDFSHV-HTFKGHD-----------------HKVMAVVYVDEDQPLCISGDSGGG 316 (552)
Q Consensus 255 V~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~-~~~~~h~-----------------~~v~~v~~~~~~~~~l~s~~~dg~ 316 (552)
+..+.|.++.+++++.|+ | +||+.+++.+ ..+..|. ..|.+++|+|+ +.++++ .++.
T Consensus 28 ~~~~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~--~~~~ 102 (706)
T 2z3z_A 28 VVGLQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF--TQGG 102 (706)
T ss_dssp CTTCEEETTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE--ETTE
T ss_pred CCCCcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE--ECCE
Confidence 344556577888888888 8 9999999873 4444333 56999999998 655555 3599
Q ss_pred EEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCC-----CceeEEecCCCCC-------
Q 008820 317 IFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLD-----GTLSCTMSGHKSA------- 384 (552)
Q Consensus 317 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~-----~~~~~~~~~h~~~------- 384 (552)
|++||+.++....... ... . ....+++|+|+.|+++ .|+.|++||+.+ ++.......+...
T Consensus 103 i~~~d~~~~~~~~l~~----~~~-~-~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 103 LVGFDMLARKVTYLFD----TNE-E-TASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV 175 (706)
T ss_dssp EEEEETTTTEEEEEEC----CTT-C-CTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred EEEEECCCCceEEccC----Ccc-c-ccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence 9999998653322111 110 1 1124789999998885 679999999998 7776544444333
Q ss_pred -------eEEEEEe-CC-EEEEEe---------------------------------CCCcEEEEECCCCceeEEEecCC
Q 008820 385 -------VSTLAVC-NG-VLYSGS---------------------------------RDGTIRLWSLSDHSLLTVLEEDS 422 (552)
Q Consensus 385 -------v~~l~~~-~~-~l~s~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~ 422 (552)
+.++.|+ ++ .|++++ .+..|++||+.+++.........
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 255 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEP 255 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSC
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCC
Confidence 4789999 44 788877 45789999999887654443211
Q ss_pred CCceEEEEEEcCCCCEEEEEECCC-----cEEEEeCCcc--eeeee--cccceE-----EEEEe--cCCEEEEEeCCCeE
Q 008820 423 SGAVSSVLSLTAVQHTLVVSHESG-----SIKVWRNDKF--MKSMQ--THKGSV-----FAVFL--EGKWLFTGGWDKTV 486 (552)
Q Consensus 423 ~~~~~~~~~~s~~~~~l~~g~~dg-----~i~iwd~~~~--~~~~~--~h~~~v-----~~v~~--~~~~l~sgs~dg~i 486 (552)
.......++|+|||+.|++++.++ .|++||..+. ...+. .+...+ ..+++ ||+++++++.|+.+
T Consensus 256 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~ 335 (706)
T 2z3z_A 256 KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWN 335 (706)
T ss_dssp TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSC
T ss_pred CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCcc
Confidence 222334479999999999988775 8999996543 23322 122211 25566 89999999999999
Q ss_pred EEEecC-CCeeeeeeccCCCcccCcceEE-EEEeCC--eEEEEe-CCC--eEEEEEec
Q 008820 487 SVQELA-GDEFEEDVIPTGAIPCGSVITA-LLYWQG--KLFVGC-ADR--TVKIALCN 537 (552)
Q Consensus 487 ~iwd~~-~~~~~~~~~~~~~~~~~~~v~~-l~~~~~--~l~s~s-~Dg--~v~iw~~~ 537 (552)
++|++. ++.....+... ...+.. ++|+++ .|+.++ .++ .++||.++
T Consensus 336 ~l~~~~~~~~~~~~l~~~-----~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 336 HLYLYDTTGRLIRQVTKG-----EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp EEEEEETTSCEEEECCCS-----SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred EEEEEECCCCEEEecCCC-----CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence 999876 33333333221 344655 789853 455544 444 34454443
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.74 E-value=6e-17 Score=175.35 Aligned_cols=274 Identities=9% Similarity=0.045 Sum_probs=180.2
Q ss_pred eEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCC---CeEEEEEecCCCCEEEEEcCC---------CcEEEE
Q 008820 255 VTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH---KVMAVVYVDEDQPLCISGDSG---------GGIFVW 320 (552)
Q Consensus 255 V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~---~v~~v~~~~~~~~~l~s~~~d---------g~i~vw 320 (552)
+.+++|+ |+++++ +.||+|++||+.+++....+.+|.. .|.+++|+|++.. +++++.+ +.+.+|
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~-l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREY-ALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSE-EEEEESCCCCSSSCCCSEEEEE
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCE-EEEEecCccceeecceeeEEEE
Confidence 5667888 676655 7899999999999998888887765 4999999998774 4555543 788999
Q ss_pred eCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCe---------------
Q 008820 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAV--------------- 385 (552)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v--------------- 385 (552)
|+.++.. ..+.....+. ......+++|+|+.|++++. +.|++||+.+++.......+...+
T Consensus 97 d~~~~~~-~~l~~~~~~~--~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~ 172 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSN--AKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEIL 172 (723)
T ss_dssp ESSSCCC-EECCCTTCCS--CCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred ECCCCce-EeccCCcccc--ccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEec
Confidence 9987654 2222211111 01123478999999998886 789999999988876665544433
Q ss_pred ---EEEEEe-CC-EEEEEeCCC----------------------------------cEEEEECCCCceeEEEecCC----
Q 008820 386 ---STLAVC-NG-VLYSGSRDG----------------------------------TIRLWSLSDHSLLTVLEEDS---- 422 (552)
Q Consensus 386 ---~~l~~~-~~-~l~s~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~---- 422 (552)
.+++|+ ++ .|++++.|+ .|++||+.+++....+..+.
T Consensus 173 ~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~ 252 (723)
T 1xfd_A 173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRM 252 (723)
T ss_dssp SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred cCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCC
Confidence 789999 44 788777553 79999999888655555331
Q ss_pred CCceEEEEEEcCCCCEEEEEEC----CCcEEEEeCCc--ceeeeec-ccceE------EEEEecCCEEEE--EeCCC---
Q 008820 423 SGAVSSVLSLTAVQHTLVVSHE----SGSIKVWRNDK--FMKSMQT-HKGSV------FAVFLEGKWLFT--GGWDK--- 484 (552)
Q Consensus 423 ~~~~~~~~~~s~~~~~l~~g~~----dg~i~iwd~~~--~~~~~~~-h~~~v------~~v~~~~~~l~s--gs~dg--- 484 (552)
.......+.|+|||+++++... +..|++||... ....+.. +...+ ..+++||+.|+. +..++
T Consensus 253 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 332 (723)
T 1xfd_A 253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG 332 (723)
T ss_dssp SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSS
T ss_pred ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCc
Confidence 0222334699999998877653 35799999653 3333333 23332 234558887664 45677
Q ss_pred ---eEEEEe-cCCCee--eeeeccCCCcccCcceE-EEEEeCC--eEEEEeCC---CeEEEEEecCC
Q 008820 485 ---TVSVQE-LAGDEF--EEDVIPTGAIPCGSVIT-ALLYWQG--KLFVGCAD---RTVKIALCNRQ 539 (552)
Q Consensus 485 ---~i~iwd-~~~~~~--~~~~~~~~~~~~~~~v~-~l~~~~~--~l~s~s~D---g~v~iw~~~~~ 539 (552)
.|++|| ..++.. ...+... ...+. .++|+++ .|+..+.+ +.+++|+++..
T Consensus 333 ~~~~l~~~d~~~~~~~~~~~~l~~~-----~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 333 KFYHITVSSSQPNSSNDNIQSITSG-----DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp CEEEEEEECSSCCSSSCCCCBSCCS-----SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred ceeEEEEEeccCCCCccceeEeecC-----CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 577777 344430 2222211 22233 4688853 46655544 88999999743
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-15 Score=145.61 Aligned_cols=263 Identities=13% Similarity=0.141 Sum_probs=162.0
Q ss_pred CCcEEEEeC--CCCeEEE-EEeCCCCCeEEEEEecCCCCEEEEEcC--CCcEEEEeCCCCCCCccccccccCCCceeeeE
Q 008820 271 DKSIHVWSL--KDFSHVH-TFKGHDHKVMAVVYVDEDQPLCISGDS--GGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGI 345 (552)
Q Consensus 271 dg~I~iwd~--~~~~~~~-~~~~h~~~v~~v~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 345 (552)
++.|.+|++ .+++... ....+...+..++|+|++. +++++.. ++.|.+|++..+.. ..+....... .....
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~--~~p~~ 90 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPG--TPPAY 90 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-EEEEEEEEES--CCCSE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-EEeeeeecCC--CCCEE
Confidence 456777765 4565533 2334556778899999877 5555543 79999999965432 1222111111 11123
Q ss_pred EEEeeCCCEEEEee-CCCcEEEEECC-CCc--eeEEecC---------CCCCeEEEEEe-CC-EEEEEeCCCcEEEEECC
Q 008820 346 HALTTSGRYLYTGS-GDRTIKAWSLL-DGT--LSCTMSG---------HKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLS 410 (552)
Q Consensus 346 ~~~~~~~~~l~sgs-~dg~i~iwd~~-~~~--~~~~~~~---------h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~ 410 (552)
.++++++++|++++ .++.|.+||+. ++. .+..+.. +...+.+++|+ ++ ++++...++.|++||+.
T Consensus 91 ~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~ 170 (347)
T 3hfq_A 91 VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVS 170 (347)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEEC
Confidence 57899999888877 78999999996 332 3333321 12348889999 33 56666678899999998
Q ss_pred -CCceeE--EEecCCCCceEEEEEEcCCCCEEEE-EECCCcEEEEeCCc---c---eeeeeccc------ceEEEEEe--
Q 008820 411 -DHSLLT--VLEEDSSGAVSSVLSLTAVQHTLVV-SHESGSIKVWRNDK---F---MKSMQTHK------GSVFAVFL-- 472 (552)
Q Consensus 411 -~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iwd~~~---~---~~~~~~h~------~~v~~v~~-- 472 (552)
+++... .+.......... ++|+|+|+++++ +..++.|.+|+... . ...+.... ..+..+.+
T Consensus 171 ~~g~~~~~~~~~~~~g~~p~~-~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 171 DAGQLSEQSVLTMEAGFGPRH-LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp TTSCEEEEEEEECCTTCCEEE-EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred CCCcEEEeeeEEcCCCCCCce-EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence 554332 222222223333 799999996666 45688999998542 1 22222221 34555555
Q ss_pred cCCEE-EEEeCCCeEEEEecCCC-ee--eeeeccCCCcccCcceEEEEEeC-C-eEEEEeC-CCeEEEEEecCCccee
Q 008820 473 EGKWL-FTGGWDKTVSVQELAGD-EF--EEDVIPTGAIPCGSVITALLYWQ-G-KLFVGCA-DRTVKIALCNRQIPEI 543 (552)
Q Consensus 473 ~~~~l-~sgs~dg~i~iwd~~~~-~~--~~~~~~~~~~~~~~~v~~l~~~~-~-~l~s~s~-Dg~v~iw~~~~~~~~~ 543 (552)
||++| ++...++.|.+|++... .. ....... ...+..++|++ + .|++++. ++.|.+|+++.....+
T Consensus 250 dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-----~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 250 DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE-----GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS-----SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC-----CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 89877 55667899999999732 22 2221111 33467899995 3 4777765 5999999887543333
|
| >4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-19 Score=173.42 Aligned_cols=121 Identities=17% Similarity=0.250 Sum_probs=88.4
Q ss_pred hhhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC
Q 008820 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (552)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~ 87 (552)
.-.+|++ |+|+.+.........+...||+.|||||++. ...++.+||||||||+||||+| |+
T Consensus 221 ~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~---------------~~~y~~ksDVwS~Gv~l~El~t~G~ 285 (353)
T 4ase_A 221 KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIF---------------DRVYTIQSDVWSFGVLLWEIFSLGA 285 (353)
T ss_dssp GGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHH---------------HCCCCHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCEEECcchhhhhcccCCCceeeccccccccccCHHHHh---------------cCCCCCcccEeehHHHHHHHHhCCC
Confidence 4578888 8998876655444467889999999999992 2567899999999999999998 89
Q ss_pred -CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
||.+...... ....+..-. ...+....+++.+++.+|++.+|.+||++.++.+.+..+
T Consensus 286 ~Pf~~~~~~~~--------------------~~~~i~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~l 345 (353)
T 4ase_A 286 SPYPGVKIDEE--------------------FCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 345 (353)
T ss_dssp CSSTTCCCSHH--------------------HHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHH--------------------HHHHHHcCCCCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence 9976432210 001110000 111223455699999999999999999999999988877
Q ss_pred h
Q 008820 166 I 166 (552)
Q Consensus 166 ~ 166 (552)
+
T Consensus 346 l 346 (353)
T 4ase_A 346 L 346 (353)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-15 Score=154.24 Aligned_cols=199 Identities=13% Similarity=0.104 Sum_probs=140.0
Q ss_pred ccceEEEEEc--CCEEEEEeCCCcEEEEeCCCC-----------eEE-----EEEeCCCCCeEEEEEecCCCCEEE---E
Q 008820 252 RDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF-----------SHV-----HTFKGHDHKVMAVVYVDEDQPLCI---S 310 (552)
Q Consensus 252 ~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~-----------~~~-----~~~~~h~~~v~~v~~~~~~~~~l~---s 310 (552)
...++.++++ +.++++++.|+ +++|+.... ... .. ..+...|.+++|+|++..+++ +
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLL-VPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEE-ECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcccc-ccCCCcccEEEEcCCCCEEEEEEec
Confidence 4457888888 88899999887 889874310 111 11 236678999999998775544 7
Q ss_pred EcCCCcEEEEeCCCC-----CCCcc---ccccccCCCceeeeEEEEeeC-CCEEEEeeCCCcEEEEECCCCceeEEecCC
Q 008820 311 GDSGGGIFVWSFSFP-----LGHEP---LKKWNEEKDWRYSGIHALTTS-GRYLYTGSGDRTIKAWSLLDGTLSCTMSGH 381 (552)
Q Consensus 311 ~~~dg~i~vwd~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h 381 (552)
++.|+.|++||+.+. ..... +.....+.. .....+|+|+ +++|++++.||+|++||++++..+....+|
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~ 191 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGG--MVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPS 191 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGG--SEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCC--ceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCC
Confidence 889999999998754 11111 222222221 1223467776 679999999999999999999877777789
Q ss_pred CCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCC-----CceEEEEEEcCCCCEEEEE-ECCCc------
Q 008820 382 KSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS-----GAVSSVLSLTAVQHTLVVS-HESGS------ 447 (552)
Q Consensus 382 ~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~l~~g-~~dg~------ 447 (552)
...|++++|+ +.+|++|+.||+|++||++ ++....+..+.. ......+.|++++.++++. ..+|.
T Consensus 192 ~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~ 270 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD 270 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence 9999999999 4499999999999999998 666665544321 1123336888887776543 34433
Q ss_pred EEEEeCCc
Q 008820 448 IKVWRNDK 455 (552)
Q Consensus 448 i~iwd~~~ 455 (552)
+++|++++
T Consensus 271 v~i~~l~~ 278 (434)
T 2oit_A 271 VVMALLPK 278 (434)
T ss_dssp EEEEECCC
T ss_pred eEEEEecc
Confidence 88999653
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-16 Score=175.89 Aligned_cols=275 Identities=10% Similarity=0.059 Sum_probs=197.4
Q ss_pred EEEeecCccceEEEEEc-CCEEEEEeCCCcEEEEeCCC-CeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q 008820 245 FKDLQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKD-FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (552)
Q Consensus 245 ~~~l~~H~~~V~~l~~s-~~~l~s~s~dg~I~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 322 (552)
...+.+|.+.+.++.|+ ..++++++.|++++||.+.. +.....+..|. .+...+|+|++..+++ + .++.|.+||+
T Consensus 196 ~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~-~-~~~~i~~~d~ 272 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILF-S-KGGSIYIFNP 272 (1045)
T ss_dssp EEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEE-E-ETTEEEEECT
T ss_pred eEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEE-E-eCCEEEEecC
Confidence 34458999999999999 55666778889999998653 44455566565 4667799998876544 4 4899999998
Q ss_pred CCCCCCccccccccCC---C------ceeeeEEEEe-eCCCEEEEeeCCCcEEEEECCCCceeEEecCCCC-CeEEEEEe
Q 008820 323 SFPLGHEPLKKWNEEK---D------WRYSGIHALT-TSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKS-AVSTLAVC 391 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~---~------~~~~~~~~~~-~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~~ 391 (552)
.... +..+.... . .......+++ |+|+.+++++ ++.|.+|++.+++.. .+..|.. .+.+++|+
T Consensus 273 ~~~~----l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s 346 (1045)
T 1k32_A 273 DTEK----IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD 346 (1045)
T ss_dssp TTCC----EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS
T ss_pred CceE----eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc
Confidence 4321 11211110 0 0012345889 9999888887 789999999877654 4666777 88999998
Q ss_pred CC-EEEEEeCCCcEE-EEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeeecccceE
Q 008820 392 NG-VLYSGSRDGTIR-LWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSV 467 (552)
Q Consensus 392 ~~-~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~h~~~v 467 (552)
++ .+++++.++.+. +||+.+++... +. .+...+.. ++|+|+|++|++++.++.|++||+.. ......+|...+
T Consensus 347 dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~-~~~~~~~~-~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v 423 (1045)
T 1k32_A 347 TKVAFIHGTREGDFLGIYDYRTGKAEK-FE-ENLGNVFA-MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMI 423 (1045)
T ss_dssp SEEEEEEEETTEEEEEEEETTTCCEEE-CC-CCCCSEEE-EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCC
T ss_pred CCCeEEEEECCCceEEEEECCCCCceE-ec-CCccceee-eEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCc
Confidence 32 788888888898 99998776543 33 33344444 79999999999999999999999653 444555788877
Q ss_pred EEEEe--cCCEEEEEeCCC----------eEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-C-eEEEEeCCCeEEE
Q 008820 468 FAVFL--EGKWLFTGGWDK----------TVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-G-KLFVGCADRTVKI 533 (552)
Q Consensus 468 ~~v~~--~~~~l~sgs~dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~-~l~s~s~Dg~v~i 533 (552)
.++.| ||++|++++.++ .|++||+.+++.... .. +...+..++|++ + .|++++.++...+
T Consensus 424 ~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l-~~-----~~~~~~~~~~spdG~~l~~~s~~~~~~~ 497 (1045)
T 1k32_A 424 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TT-----ENSHDYAPAFDADSKNLYYLSYRSLDPS 497 (1045)
T ss_dssp CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-SC-----SSSBEEEEEECTTSCEEEEEESCCCCCE
T ss_pred cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEe-eC-----CCcccCCceEcCCCCEEEEEecccCCcC
Confidence 76665 999999887654 899999998763322 22 144577889995 3 4888998888888
Q ss_pred EEec
Q 008820 534 ALCN 537 (552)
Q Consensus 534 w~~~ 537 (552)
|+..
T Consensus 498 ~~~~ 501 (1045)
T 1k32_A 498 PDRV 501 (1045)
T ss_dssp ECSS
T ss_pred cchh
Confidence 8743
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-16 Score=148.95 Aligned_cols=229 Identities=13% Similarity=0.119 Sum_probs=160.5
Q ss_pred EeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCC-CeEEEEEeCC-CCCeEEEEEecCCCCEEEEEc--CCCcEEEE
Q 008820 247 DLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD-FSHVHTFKGH-DHKVMAVVYVDEDQPLCISGD--SGGGIFVW 320 (552)
Q Consensus 247 ~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~-~~~~~~~~~h-~~~v~~v~~~~~~~~~l~s~~--~dg~i~vw 320 (552)
.+..|...|.+++|+ +++|++++ ++.|++||+.+ ++.......| ...+.+++|+|++. .+++++ .++...+|
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~l~ 113 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGA-LYAISDKVEFGKSAIY 113 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSS-EEEEEECTTTSSCEEE
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCC-EEEEEEeCCCCcceEE
Confidence 466789999999999 88899887 78999999999 8877766666 36789999999876 455555 44566666
Q ss_pred eCCCCCCCccccccccCCCceeeeEEEEeeCCCEEE-EeeCCCcEEEEECC-CCceeEEecCCCCCeEEEEEe-CC-EEE
Q 008820 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLY-TGSGDRTIKAWSLL-DGTLSCTMSGHKSAVSTLAVC-NG-VLY 396 (552)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sgs~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~-~~-~l~ 396 (552)
.++..... ...+..... ....+++++++.++ +++.++.+++|+++ .+.....+..+...+.+++|+ ++ .++
T Consensus 114 ~~~~~~~~--~~~~~~~~~---~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 188 (297)
T 2ojh_A 114 LLPSTGGT--PRLMTKNLP---SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIY 188 (297)
T ss_dssp EEETTCCC--CEECCSSSS---EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEE
T ss_pred EEECCCCc--eEEeecCCC---ccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEE
Confidence 65432211 112222211 23347899999766 78889999999864 233445667788899999999 33 566
Q ss_pred EEe-CCCcEEEEECC-CCceeEEEecCCCCceEEEEEEcCCCCEEEEEECC-----------CcEEEEeCCc--c--eee
Q 008820 397 SGS-RDGTIRLWSLS-DHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES-----------GSIKVWRNDK--F--MKS 459 (552)
Q Consensus 397 s~~-~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----------g~i~iwd~~~--~--~~~ 459 (552)
.++ .++.+++|++. .+.....+..+ .. ....+.|+|++++|++++.+ +.|++||... . +..
T Consensus 189 ~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 266 (297)
T 2ojh_A 189 FNSSRTGQMQIWRVRVDGSSVERITDS-AY-GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD 266 (297)
T ss_dssp EEECTTSSCEEEEEETTSSCEEECCCC-SE-EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE
T ss_pred EEecCCCCccEEEECCCCCCcEEEecC-Cc-ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec
Confidence 555 69999999986 45555555443 22 33346899999999888765 5699999653 2 233
Q ss_pred eecccceEEEEEe--cCCEEEEEeCCC
Q 008820 460 MQTHKGSVFAVFL--EGKWLFTGGWDK 484 (552)
Q Consensus 460 ~~~h~~~v~~v~~--~~~~l~sgs~dg 484 (552)
+.+|...+.++.| ++++|++++.+.
T Consensus 267 ~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 267 LFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCCCCcccccceECCCCCEEEEEEecc
Confidence 4467777777666 899888887653
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-14 Score=141.95 Aligned_cols=261 Identities=16% Similarity=0.144 Sum_probs=164.6
Q ss_pred CccceEEEEEc--CCEEEEEeCC----CcEEEEeCCC--Ce--EEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 008820 251 HRDCVTGLAVG--GGFLFSSSFD----KSIHVWSLKD--FS--HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (552)
Q Consensus 251 H~~~V~~l~~s--~~~l~s~s~d----g~I~iwd~~~--~~--~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vw 320 (552)
|...+..++|+ +++|++++.+ +.|.+|++.. ++ .+.....+......+++ ++..++++...++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 66777888998 8889999886 7999998865 44 33444556667778887 566566666678999999
Q ss_pred eCCCCCCCccccccccCCC---------ceeeeEEEEeeCCCEEEEee-CCCcEEEEECCCCc-------e------eEE
Q 008820 321 SFSFPLGHEPLKKWNEEKD---------WRYSGIHALTTSGRYLYTGS-GDRTIKAWSLLDGT-------L------SCT 377 (552)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~sgs-~dg~i~iwd~~~~~-------~------~~~ 377 (552)
++........+........ .......+++|+++++++++ .++.|.+|++.... . ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 9975443322211100000 01112358899999665544 58899999987543 1 112
Q ss_pred ecCCCCCeEEEEEe-CC-EEEEEe-CCCcEEEEECCCCce--eEEEecCCC-CceEEEEEEcCCCCEEEEEECC--CcEE
Q 008820 378 MSGHKSAVSTLAVC-NG-VLYSGS-RDGTIRLWSLSDHSL--LTVLEEDSS-GAVSSVLSLTAVQHTLVVSHES--GSIK 449 (552)
Q Consensus 378 ~~~h~~~v~~l~~~-~~-~l~s~~-~dg~i~iwd~~~~~~--~~~~~~~~~-~~~~~~~~~s~~~~~l~~g~~d--g~i~ 449 (552)
...+......++|+ ++ ++++++ .++.|.+||+.+++. +..+..... ......++|+|+|++|+++..+ +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 23345567899999 44 676666 689999999987754 233322111 1112347999999998777654 8999
Q ss_pred EEeCC----c--ceeeeecccceEEEEE--ecCCEEEEEe-CCCeEEEEec--CCCeeeeeeccCCCcccCcceEEEEEe
Q 008820 450 VWRND----K--FMKSMQTHKGSVFAVF--LEGKWLFTGG-WDKTVSVQEL--AGDEFEEDVIPTGAIPCGSVITALLYW 518 (552)
Q Consensus 450 iwd~~----~--~~~~~~~h~~~v~~v~--~~~~~l~sgs-~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~v~~l~~~ 518 (552)
+|++. + .+..+.. ...+..+. ++|++|++++ .++.|.+|++ .++++....... ....+.|+.|.
T Consensus 286 v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~----~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDI----KVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCE----ECSSEEEEEEE
T ss_pred EEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceee----eCCCCeEEEEc
Confidence 99864 2 2222222 23444454 5899888887 6789999655 455544332111 12347777775
|
| >4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.7e-19 Score=172.40 Aligned_cols=113 Identities=14% Similarity=0.213 Sum_probs=79.5
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+|+.+..... ..+.++|||.|||||++ . ...+++++|||||||+||||++|+ ||
T Consensus 285 ~vKl~DFGla~~~~~~~~--~~~~~~GTp~YmAPEvl------~---------~~~y~~~~DiWSlGvilyeml~G~~PF 347 (423)
T 4fie_A 285 RVKLSDFGFCAQVSKEVP--RRKSLVGTPYWMAPELI------S---------RLPYGPEVDIWSLGIMVIEMVDGEPPY 347 (423)
T ss_dssp CEEECCCTTCEECCSSCC--CBCCCEECTTTCCHHHH------T---------TCCBCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred CEEEecCccceECCCCCc--cccccccCcCcCCHHHH------C---------CCCCCcHHHHHHHHHHHHHHHHCCCCC
Confidence 35777 88887765533 36789999999999999 2 356789999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+.+...+. ..+....+ ...........++.+++.+||++||.+||++.++.+
T Consensus 348 ~~~~~~~~~-----------------~~i~~~~~-~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 348 FNEPPLKAM-----------------KMIRDNLP-PRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp TTSCHHHHH-----------------HHHHHSCC-CCCSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCcCHHHHH-----------------HHHHcCCC-CCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 765433110 11111000 001112234556999999999999999999877554
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.3e-16 Score=156.64 Aligned_cols=184 Identities=13% Similarity=0.063 Sum_probs=134.6
Q ss_pred ccceeeecCcceEEEeeCCCeEEEEEe------------------------ecCccceEEEEEc--CCEEE----EEeCC
Q 008820 222 IDQARAAGGVKDLVNGLSKGNVKFKDL------------------------QGHRDCVTGLAVG--GGFLF----SSSFD 271 (552)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~l------------------------~~H~~~V~~l~~s--~~~l~----s~s~d 271 (552)
.+..++++....++.+..++ +.++.. ..|.+.|++++|+ +++|+ +|+.|
T Consensus 39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d 117 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYG 117 (434)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence 55666777777777776665 555431 1245579999999 88999 88999
Q ss_pred CcEEEEeCCCC--------e---EEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCc
Q 008820 272 KSIHVWSLKDF--------S---HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDW 340 (552)
Q Consensus 272 g~I~iwd~~~~--------~---~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 340 (552)
++|+|||+.++ + .+..+.+|...|.+++|+|++..++++++.||+|++||++++.. ......+.
T Consensus 118 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~---~~~~~~~~-- 192 (434)
T 2oit_A 118 SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK---VCATLPST-- 192 (434)
T ss_dssp EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE---EEEEECGG--
T ss_pred ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc---eeeccCCC--
Confidence 99999998654 2 24556779999999999998788999999999999999987522 11111111
Q ss_pred eeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCC-------CCeEEEEEe-CCEEE--EEeCCCc------E
Q 008820 341 RYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHK-------SAVSTLAVC-NGVLY--SGSRDGT------I 404 (552)
Q Consensus 341 ~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~-------~~v~~l~~~-~~~l~--s~~~dg~------i 404 (552)
......++++++++|++|+.||.|++||.+ ++....+..|. ..|.++.|+ ++.++ .++.||. +
T Consensus 193 ~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v 271 (434)
T 2oit_A 193 VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDV 271 (434)
T ss_dssp GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEE
T ss_pred CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCce
Confidence 122345788999999999999999999998 66666665442 378999999 44333 3444433 8
Q ss_pred EEEECCCC
Q 008820 405 RLWSLSDH 412 (552)
Q Consensus 405 ~iwd~~~~ 412 (552)
++||+++.
T Consensus 272 ~i~~l~~~ 279 (434)
T 2oit_A 272 VMALLPKK 279 (434)
T ss_dssp EEEECCCT
T ss_pred EEEEeccC
Confidence 99999865
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-15 Score=145.80 Aligned_cols=232 Identities=11% Similarity=0.067 Sum_probs=157.9
Q ss_pred ceEEEEEc--CCEE-EEEeCCCcEEEEeCCCCeEEEEEeCC-----CCCeEEEEEecCCCCEEEEEc-----------CC
Q 008820 254 CVTGLAVG--GGFL-FSSSFDKSIHVWSLKDFSHVHTFKGH-----DHKVMAVVYVDEDQPLCISGD-----------SG 314 (552)
Q Consensus 254 ~V~~l~~s--~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~h-----~~~v~~v~~~~~~~~~l~s~~-----------~d 314 (552)
.+.+++|+ ++++ ++++.++.|.+||+.+++.+..+... ...+..++|+|++..++++.. .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 47889998 6555 56667889999999999988877642 125778999998775544431 57
Q ss_pred CcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCC--CCeEEEEEe-
Q 008820 315 GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHK--SAVSTLAVC- 391 (552)
Q Consensus 315 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~--~~v~~l~~~- 391 (552)
+.|.+||+.+++....+.. .. .. ...++++++++++++ ++.|++||+.+++....+..+. .++ .|+
T Consensus 115 ~~i~v~d~~~~~~~~~~~~---~~--~~-~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~---~~s~ 183 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEA---PR--QI-TMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAET---YAQP 183 (337)
T ss_dssp CEEEEEETTTTEEEEEEEC---CS--SC-CCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTT---BCCC
T ss_pred ceEEEEECCCCcEEEEEeC---CC--Cc-ceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCc---eeCC
Confidence 9999999986543322221 11 11 124689999988777 6899999999999887776543 222 444
Q ss_pred -CCEEEEEe-CCC-----------------------cEEEEECCCCceeEEEec-CCCCceEEEEEEcCCCCEEEEEECC
Q 008820 392 -NGVLYSGS-RDG-----------------------TIRLWSLSDHSLLTVLEE-DSSGAVSSVLSLTAVQHTLVVSHES 445 (552)
Q Consensus 392 -~~~l~s~~-~dg-----------------------~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~g~~d 445 (552)
+..++..+ .++ .|.+||+.+++.. .+.. ....... .++++|++++++++ +
T Consensus 184 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~-~~~~s~dg~~l~~~--~ 259 (337)
T 1pby_B 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYF-STAVNPAKTRAFGA--Y 259 (337)
T ss_dssp BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEE-EEEECTTSSEEEEE--E
T ss_pred CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCcee-eEEECCCCCEEEEe--C
Confidence 22333322 222 4789999998875 3322 1222333 37999999999988 7
Q ss_pred CcEEEEeCCc--ceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeec
Q 008820 446 GSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVI 501 (552)
Q Consensus 446 g~i~iwd~~~--~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 501 (552)
+.|++||... ....+..+ ..+.++.+ ++++|++++.++.|++||+.+++....+.
T Consensus 260 ~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 260 NVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp SEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred CeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 8999999754 33444432 23445554 89999999999999999999887665543
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-15 Score=158.19 Aligned_cols=256 Identities=14% Similarity=0.063 Sum_probs=180.9
Q ss_pred ccceeeecCcceEEEeeC-CCeEEEEEeec--------Cc-cceEEEEEc-CCEEEEEeC---CCcEEEEeCCC---CeE
Q 008820 222 IDQARAAGGVKDLVNGLS-KGNVKFKDLQG--------HR-DCVTGLAVG-GGFLFSSSF---DKSIHVWSLKD---FSH 284 (552)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~--------H~-~~V~~l~~s-~~~l~s~s~---dg~I~iwd~~~---~~~ 284 (552)
+..+.++++++.++.... ++.+.+|.+.+ |. ..|.+++|+ ++.+++++. +...++|.+.. +..
T Consensus 24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~ 103 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEE 103 (582)
T ss_dssp EEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCC
T ss_pred hheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCcc
Confidence 667788888888887765 88888888643 44 588999999 666666664 45566665432 332
Q ss_pred EEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCC---
Q 008820 285 VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD--- 361 (552)
Q Consensus 285 ~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d--- 361 (552)
. .+..+ ..+...+|+|+++.++++.+.++.+.+||+.+++...... ... ....++|||+.+++++.+
T Consensus 104 ~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~----~~~----~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 104 Q-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR----LPG----FGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp E-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE----ESS----CEEEEEEETTEEEEEEEEETT
T ss_pred c-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec----CCC----ceEEECCCCCEEEEEEEcCCC
Confidence 2 33322 2345678999888766666666666699998664322211 111 345789999999988877
Q ss_pred -CcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeCCC--cEEEEECCCCceeEEEecCCCCceEEE-------
Q 008820 362 -RTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDG--TIRLWSLSDHSLLTVLEEDSSGAVSSV------- 429 (552)
Q Consensus 362 -g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~------- 429 (552)
+.|++||+.+++.. .+..|...+.+++|+ ++ .|+++..++ .|++||+.+++.. .+..+ ...+...
T Consensus 174 ~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~-~~~~~~~~~~~~~~ 250 (582)
T 3o4h_A 174 RVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP-SKDFSSYRPTAITW 250 (582)
T ss_dssp EEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS-CSHHHHHCCSEEEE
T ss_pred CeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC-CcChhhhhhccccc
Confidence 78999999888765 677788899999999 44 788888888 8999999998877 44433 2222221
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCcceeeeecccceEEEEEe-cCCEEEEEeCCCe---EEEEecCC
Q 008820 430 LSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFL-EGKWLFTGGWDKT---VSVQELAG 493 (552)
Q Consensus 430 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~h~~~v~~v~~-~~~~l~sgs~dg~---i~iwd~~~ 493 (552)
.+|+|||.++++++.|+++++|+.++... .+.+.+.++++ +++++++++.+.+ +++||..+
T Consensus 251 ~~~spdg~~~~~~~~~g~~~l~~~g~~~~---~~~~~v~~~~~sdg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 251 LGYLPDGRLAVVARREGRSAVFIDGERVE---APQGNHGRVVLWRGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEECTTSCEEEEEEETTEEEEEETTEEEC---CCSSEEEEEEEETTEEEEEEEETTEEEEEEEETTCC
T ss_pred eeEcCCCcEEEEEEcCCcEEEEEECCeec---cCCCceEEEEecCCEEEEEEcCCCCCCeEEEEcCCC
Confidence 23999999999999999999999832222 34466766665 8888888887744 77777655
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-13 Score=135.88 Aligned_cols=265 Identities=11% Similarity=0.147 Sum_probs=160.1
Q ss_pred CCCcEEEEeC--CCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCC----CcEEEEeCCCC-CCCccccccccCCCcee
Q 008820 270 FDKSIHVWSL--KDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSG----GGIFVWSFSFP-LGHEPLKKWNEEKDWRY 342 (552)
Q Consensus 270 ~dg~I~iwd~--~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d----g~i~vwd~~~~-~~~~~~~~~~~~~~~~~ 342 (552)
.++.|.+|++ .+++.......+...+..++|+|++. +|++++.+ +.|.+|+++.. .....+........
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~-~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~--- 100 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGK-FVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGA--- 100 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSS-EEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSS---
T ss_pred CCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCC-EEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCC---
Confidence 3567888866 45654332222667788899999876 44555554 89999998753 11222222211111
Q ss_pred eeEEEEeeCCCEEEEee-CCCcEEEEECCCCceeEE------ecC--------CCCCeEEEEEe-CC-EEEEEe-CCCcE
Q 008820 343 SGIHALTTSGRYLYTGS-GDRTIKAWSLLDGTLSCT------MSG--------HKSAVSTLAVC-NG-VLYSGS-RDGTI 404 (552)
Q Consensus 343 ~~~~~~~~~~~~l~sgs-~dg~i~iwd~~~~~~~~~------~~~--------h~~~v~~l~~~-~~-~l~s~~-~dg~i 404 (552)
....+..+++++++++ .++.|.+|++.....+.. ..+ +...+.+++|+ ++ ++++++ .++.|
T Consensus 101 -~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v 179 (361)
T 3scy_A 101 -DPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQI 179 (361)
T ss_dssp -CEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred -CcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEE
Confidence 1223334888776665 678999999975432211 111 12345889999 44 555544 58999
Q ss_pred EEEECCCCce------e------EEEecCCCCceEEEEEEcCCCCEEEEEE-CCCcEEEEeCCcc----eeeee---ccc
Q 008820 405 RLWSLSDHSL------L------TVLEEDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRNDKF----MKSMQ---THK 464 (552)
Q Consensus 405 ~iwd~~~~~~------~------~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~----~~~~~---~h~ 464 (552)
++|++..... + ............ .++|+|+|+++++++ .++.|.+||.... ...+. .+.
T Consensus 180 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~ 258 (361)
T 3scy_A 180 HKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPR-HLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNA 258 (361)
T ss_dssp EEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEE-EEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCC
T ss_pred EEEEEcCCCCcccccceeecccccceecCCCCCCe-EEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCC
Confidence 9999875431 1 222222222333 379999999888877 5899999996421 22222 222
Q ss_pred ceEEEEEe--cCCEEEEEeCC--CeEEEEecC--CCeeeeeeccCCCcccCcceEEEEEeC-C-eEEEEe-CCCeEEEEE
Q 008820 465 GSVFAVFL--EGKWLFTGGWD--KTVSVQELA--GDEFEEDVIPTGAIPCGSVITALLYWQ-G-KLFVGC-ADRTVKIAL 535 (552)
Q Consensus 465 ~~v~~v~~--~~~~l~sgs~d--g~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~l~~~~-~-~l~s~s-~Dg~v~iw~ 535 (552)
.....+.+ ||++|+++..+ +.|.+|++. +++........ ....+..++|++ + .|++++ .++.|.+|+
T Consensus 259 ~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~----~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~ 334 (361)
T 3scy_A 259 QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL----TGIHPRNFIITPNGKYLLVACRDTNVIQIFE 334 (361)
T ss_dssp CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE----CSSCCCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec----CCCCCceEEECCCCCEEEEEECCCCCEEEEE
Confidence 33455554 99998776654 899999996 34432221111 123467899995 3 477776 679999998
Q ss_pred ecCCcceeE
Q 008820 536 CNRQIPEIF 544 (552)
Q Consensus 536 ~~~~~~~~~ 544 (552)
++.....+.
T Consensus 335 ~d~~~g~~~ 343 (361)
T 3scy_A 335 RDQATGLLT 343 (361)
T ss_dssp ECTTTCCEE
T ss_pred EECCCCcEe
Confidence 875443433
|
| >3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.2e-18 Score=161.09 Aligned_cols=143 Identities=8% Similarity=0.044 Sum_probs=81.3
Q ss_pred hhhhhcc--cccccccccchh--hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhC
Q 008820 11 KSVAKVG--CVGSRICDKEVG--LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG 86 (552)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~--~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg 86 (552)
.-.+|++ |+|+.+...... ......+|||.|||||++.+.... ..+.++.++|||||||+||||+||
T Consensus 144 ~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~---------~~~~~~~k~DVwS~Gvvl~El~tg 214 (303)
T 3hmm_A 144 NGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINM---------KHFESFKRADIYAMGLVFWEIARR 214 (303)
T ss_dssp TSCEEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCT---------TCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCccccCCCCceeeecccccccccccCHHHhcccccc---------cCCccChhHhhhhHHHHHHHHHHC
Confidence 3467888 888777654332 234567899999999999221110 124577899999999999999999
Q ss_pred C-CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHH------HHHhhhhc-CccccHHHHHHhhcccCCCCCcchhhH
Q 008820 87 E-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVT------YLLENKFG-SEFVSLQLMFCQCLNFDPGCRPLLTNV 158 (552)
Q Consensus 87 ~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~l~~~~~~~l~~~p~~R~~~~~~ 158 (552)
+ ||......+.- .....+..+. .......+. ..|..... .....+.+++.+|++.+|.+||++.++
T Consensus 215 ~~~~~~~~~~~~p--~~~~~~~~~~----~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei 288 (303)
T 3hmm_A 215 CSIGGIHEDYQLP--YYDLVPSDPS----VEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRI 288 (303)
T ss_dssp BCBTTBCCCCCCT--TTTTSCSSCC----HHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHH
T ss_pred CCCCCcccccccc--chhcccccch----HHHHHHHHhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHH
Confidence 9 77432211000 0000000000 011111110 00100000 011247889999999999999999999
Q ss_pred HHHHHhhhcC
Q 008820 159 WKCIRELIIK 168 (552)
Q Consensus 159 ~~~l~~~~~~ 168 (552)
.+.+.++...
T Consensus 289 ~~~L~~l~~~ 298 (303)
T 3hmm_A 289 KKTLSQLSQQ 298 (303)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9998887643
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.65 E-value=8.9e-14 Score=148.85 Aligned_cols=292 Identities=8% Similarity=-0.011 Sum_probs=183.4
Q ss_pred EEeecCccceEEEEEcCCEEE--EE--eCCCcEEEEeCCCCeEEEEEeCCCCCeE---------EEEEe--cCCCC-EEE
Q 008820 246 KDLQGHRDCVTGLAVGGGFLF--SS--SFDKSIHVWSLKDFSHVHTFKGHDHKVM---------AVVYV--DEDQP-LCI 309 (552)
Q Consensus 246 ~~l~~H~~~V~~l~~s~~~l~--s~--s~dg~I~iwd~~~~~~~~~~~~h~~~v~---------~v~~~--~~~~~-~l~ 309 (552)
..+.+|...|..++++++.++ +. +.++...||....+.....+..|...+. ...|+ |+++. +++
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 346789999999999955443 33 3478899999655555667777776666 66676 88887 655
Q ss_pred EEcCCCcEEEEeCC--CCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCC----------CcEEEEECCC------
Q 008820 310 SGDSGGGIFVWSFS--FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD----------RTIKAWSLLD------ 371 (552)
Q Consensus 310 s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d----------g~i~iwd~~~------ 371 (552)
+...+..|.+|++. .......+...............+++|+|+.|++++.| ..|++||+.+
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 55556777777765 20222222221100011233345899999999988877 5899999987
Q ss_pred CceeEEec-CCCCCeEEEEEe-CC-EEEEEeCC--------CcEEEEECC-CCc--eeEEEecCCCCceEEEEEEcCCCC
Q 008820 372 GTLSCTMS-GHKSAVSTLAVC-NG-VLYSGSRD--------GTIRLWSLS-DHS--LLTVLEEDSSGAVSSVLSLTAVQH 437 (552)
Q Consensus 372 ~~~~~~~~-~h~~~v~~l~~~-~~-~l~s~~~d--------g~i~iwd~~-~~~--~~~~~~~~~~~~~~~~~~~s~~~~ 437 (552)
++. ..+. .+...+..++|+ ++ .|+.++.+ ..|++||+. +++ ....+...+...... ..|+|||+
T Consensus 177 ~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~-~~~spdg~ 254 (662)
T 3azo_A 177 SAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQ-AEWAPDGS 254 (662)
T ss_dssp GGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEE-EEECTTSC
T ss_pred Cce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcc-eEECCCCe
Confidence 554 4555 566778889999 44 77777755 379999998 562 333333332333444 68999999
Q ss_pred EEEEEECCC--cEEEEeCC-cceeee-ecccce--------EEEEEe--cCCEEEEEeCCCeEEEE--ecCCCeeeeeec
Q 008820 438 TLVVSHESG--SIKVWRND-KFMKSM-QTHKGS--------VFAVFL--EGKWLFTGGWDKTVSVQ--ELAGDEFEEDVI 501 (552)
Q Consensus 438 ~l~~g~~dg--~i~iwd~~-~~~~~~-~~h~~~--------v~~v~~--~~~~l~sgs~dg~i~iw--d~~~~~~~~~~~ 501 (552)
++++++.++ .|++||.. .....+ ..+... +..+.+ +++++++++. +.+++| |+.+++... +.
T Consensus 255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~-l~ 332 (662)
T 3azo_A 255 LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVD-AA 332 (662)
T ss_dssp EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEE-CC
T ss_pred EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEE-ec
Confidence 888888888 56666652 222222 222211 234444 7889999998 999999 655555332 22
Q ss_pred cCCCcccCcceEEE-EEeCCe--EEEEeCCCeEEEEEecCCcceeEEE
Q 008820 502 PTGAIPCGSVITAL-LYWQGK--LFVGCADRTVKIALCNRQIPEIFSL 546 (552)
Q Consensus 502 ~~~~~~~~~~v~~l-~~~~~~--l~s~s~Dg~v~iw~~~~~~~~~~~~ 546 (552)
.. ...+..+ +++++. +++++.+....+|.++........+
T Consensus 333 ~~-----~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 333 GP-----WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp SS-----CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred CC-----CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 11 3446666 676665 4455667667777665433344444
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.8e-14 Score=138.78 Aligned_cols=290 Identities=9% Similarity=0.002 Sum_probs=183.2
Q ss_pred EEEEEeecCccceEE-----EEEc--CCEEEEEeC-CCc--EEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEc
Q 008820 243 VKFKDLQGHRDCVTG-----LAVG--GGFLFSSSF-DKS--IHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGD 312 (552)
Q Consensus 243 ~~~~~l~~H~~~V~~-----l~~s--~~~l~s~s~-dg~--I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~ 312 (552)
..+..+..|...... .+|+ |++|+.++. ++. |.+||+.+++......++...+..++|+|++. .|+.++
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~-~l~~~~ 99 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD-ALFYVK 99 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS-EEEEEE
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC-EEEEEe
Confidence 345667778776666 7888 888888887 664 88889999988877777766666778999776 567777
Q ss_pred CCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEE----------------------eeCCCcEEEEECC
Q 008820 313 SGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYT----------------------GSGDRTIKAWSLL 370 (552)
Q Consensus 313 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s----------------------gs~dg~i~iwd~~ 370 (552)
.++.|++||+.+++...... .+..........++++++.++. ...++.|++||+.
T Consensus 100 ~~~~l~~~d~~~g~~~~~~~---~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 176 (388)
T 3pe7_A 100 DGRNLMRVDLATLEENVVYQ---VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK 176 (388)
T ss_dssp TTTEEEEEETTTCCEEEEEE---CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT
T ss_pred CCCeEEEEECCCCcceeeee---chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC
Confidence 78999999998765332221 1122121222345788887763 2345789999999
Q ss_pred CCceeEEecCCCCCeEEEEEeC-C--EEEEEeCC------CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEE
Q 008820 371 DGTLSCTMSGHKSAVSTLAVCN-G--VLYSGSRD------GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVV 441 (552)
Q Consensus 371 ~~~~~~~~~~h~~~v~~l~~~~-~--~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 441 (552)
+++.... ..+...+..+.|++ + .|+.++.+ ..|.++|...++. ..+..+..+.......|+|||+.|+.
T Consensus 177 ~g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~ 254 (388)
T 3pe7_A 177 TGESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVY 254 (388)
T ss_dssp TCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEE
T ss_pred CCceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEE
Confidence 8876544 34666789999996 4 66666553 3788888866543 33333322222333689999997755
Q ss_pred EEC-CC----cEEEEeCCcc----eeeeecccceE-----EEEEecCCEEEEE---------eCCCeEEEEecCCCeeee
Q 008820 442 SHE-SG----SIKVWRNDKF----MKSMQTHKGSV-----FAVFLEGKWLFTG---------GWDKTVSVQELAGDEFEE 498 (552)
Q Consensus 442 g~~-dg----~i~iwd~~~~----~~~~~~h~~~v-----~~v~~~~~~l~sg---------s~dg~i~iwd~~~~~~~~ 498 (552)
.+. ++ .|++||+... +..+.++.... ..+++||+.|+.. ..+..|++||+.+++...
T Consensus 255 ~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 334 (388)
T 3pe7_A 255 VSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHR 334 (388)
T ss_dssp EEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEE
T ss_pred EecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEE
Confidence 443 22 3999996532 22222211111 1467788877754 456789999999887654
Q ss_pred eeccCCCc-----ccCcceEEEEEeC-C-eEEE-EeCCCeEEEEEecC
Q 008820 499 DVIPTGAI-----PCGSVITALLYWQ-G-KLFV-GCADRTVKIALCNR 538 (552)
Q Consensus 499 ~~~~~~~~-----~~~~~v~~l~~~~-~-~l~s-~s~Dg~v~iw~~~~ 538 (552)
........ .....+.+++|++ + .|+. +..+|...||.++.
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 335 VARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred eccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 43332100 0011366778885 3 3554 44688888888764
|
| >4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-17 Score=156.26 Aligned_cols=110 Identities=22% Similarity=0.284 Sum_probs=64.0
Q ss_pred hhhcc--cccccccccchh----------hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhh
Q 008820 13 VAKVG--CVGSRICDKEVG----------LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACIL 80 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~----------~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l 80 (552)
..|++ |+|+.+...... .-.++.+|||.|||||++ .| ..+++++|||||||+|
T Consensus 156 ~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~------~~---------~~y~~~~DiwSlGvil 220 (299)
T 4g31_A 156 VVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQI------HG---------NSYSHKVDIFSLGLIL 220 (299)
T ss_dssp CEEECCCCCC--------------------------CCCTTSCHHHH------TT---------CCCCTHHHHHHHHHHH
T ss_pred cEEEccCccceecCCCccccccccccccccccCCcccCccccCHHHH------cC---------CCCCCHHHHHHHHHHH
Confidence 46777 888877654321 124567899999999999 33 5678999999999999
Q ss_pred hhhhhCCCchHHHhh--hhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhH
Q 008820 81 LSLLIGEQFTKELID--YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNV 158 (552)
Q Consensus 81 ~~lltg~pf~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~ 158 (552)
|||++ ||...... .+..+..... +. ... ...+.+.+++.+||+.+|.+||++.++
T Consensus 221 yell~--Pf~~~~~~~~~~~~~~~~~~---------p~--------~~~----~~~~~~~~li~~~L~~dP~~Rps~~ei 277 (299)
T 4g31_A 221 FELLY--PFSTQMERVRTLTDVRNLKF---------PP--------LFT----QKYPCEYVMVQDMLSPSPMERPEAINI 277 (299)
T ss_dssp HHHHS--CCSSHHHHHHHHHHHHTTCC---------CH--------HHH----HHCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHHcc--CCCCccHHHHHHHHHhcCCC---------CC--------CCc----ccCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 99997 77543211 1110000000 00 000 012236789999999999999998876
Q ss_pred HH
Q 008820 159 WK 160 (552)
Q Consensus 159 ~~ 160 (552)
.+
T Consensus 278 l~ 279 (299)
T 4g31_A 278 IE 279 (299)
T ss_dssp HT
T ss_pred hc
Confidence 54
|
| >4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.7e-17 Score=159.67 Aligned_cols=132 Identities=17% Similarity=0.294 Sum_probs=76.2
Q ss_pred hhcc--cccccccccch--hhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C
Q 008820 14 AKVG--CVGSRICDKEV--GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~--~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p 88 (552)
.|+. |+|+.+..... ....+.++|||.|||||++ .| ...++.++|||||||+||||+||+ |
T Consensus 197 ~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~------~~--------~~~~~~~~DiWSlG~il~ell~G~~p 262 (398)
T 4b99_A 197 LKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELM------LS--------LHEYTQAIDLWSVGCIFGEMLARRQL 262 (398)
T ss_dssp EEECCCTTCBCC-------CCCCCSSCCCCTTCCHHHH------TT--------CSCCCTHHHHHHHHHHHHHHHHTSCS
T ss_pred EEEeecceeeecccCccccccccccceeChHhcCHHHh------cC--------CCCCCChhheehhHHHHHHHHHCCCC
Confidence 4555 78877755432 2346789999999999998 33 234678999999999999999999 9
Q ss_pred chHHHhhhh----hhccccCCCchhhhhhhhHHHHHHHHHHH-------hhhhcCccccHHHHHHhhcccCCCCCcchhh
Q 008820 89 FTKELIDYI----RCVSTKASDDNIACLGMYMAWMEKVTYLL-------ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTN 157 (552)
Q Consensus 89 f~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~ 157 (552)
|.+.+...+ ....+...+..|..... ..........+ .........++.++|.+||.+||.+||++.+
T Consensus 263 F~g~~~~~~l~~I~~~~g~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e 341 (398)
T 4b99_A 263 FPGKNYVHQLQLIMMVLGTPSPAVIQAVGA-ERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAA 341 (398)
T ss_dssp SCCSSHHHHHHHHHHHHCCCCGGGTC------CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCChHHhhhhhh-hhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHH
Confidence 965432211 11111111111100000 00000000000 0011123445889999999999999999887
Q ss_pred HHH
Q 008820 158 VWK 160 (552)
Q Consensus 158 ~~~ 160 (552)
+.+
T Consensus 342 ~L~ 344 (398)
T 4b99_A 342 ALR 344 (398)
T ss_dssp HTT
T ss_pred Hhc
Confidence 544
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-13 Score=134.08 Aligned_cols=262 Identities=10% Similarity=0.023 Sum_probs=158.8
Q ss_pred cCcceEEEeeCCCeEEEEE---------eecCc-cceEEEEEc--CCEE-EEEeCCCcEEEEeCCCCeEEEEEeCCC---
Q 008820 229 GGVKDLVNGLSKGNVKFKD---------LQGHR-DCVTGLAVG--GGFL-FSSSFDKSIHVWSLKDFSHVHTFKGHD--- 292 (552)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~---------l~~H~-~~V~~l~~s--~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~h~--- 292 (552)
.....+++...++.+.+++ +..+. ..+..++|+ ++++ +++..++.|.+||+.+++....+..+.
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~ 88 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG 88 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccc
Confidence 3444555555555555555 33332 257788998 6655 555678999999999999888876432
Q ss_pred ---CCeEEEEEecCCCCEEEEEcC------------CCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEE
Q 008820 293 ---HKVMAVVYVDEDQPLCISGDS------------GGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYT 357 (552)
Q Consensus 293 ---~~v~~v~~~~~~~~~l~s~~~------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 357 (552)
..+..++|+|++..+ ++++. ++.|.+||+.+++....+........ ....+++++++ +++
T Consensus 89 ~~~~~~~~~~~spdg~~l-~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~~~~s~dg~-l~~ 163 (349)
T 1jmx_B 89 EVGRSMYSFAISPDGKEV-YATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQ---VYLMRAADDGS-LYV 163 (349)
T ss_dssp EEEECSSCEEECTTSSEE-EEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSS---CCCEEECTTSC-EEE
T ss_pred cccccccceEECCCCCEE-EEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCc---ccceeECCCCc-EEE
Confidence 237889999987755 55544 48999999987543333333322221 12346889999 555
Q ss_pred eeCCCcEEEEECCCCceeEEecCCCC------------------------CeEEEEEe-CC--EEEEEeCCCcEEEEECC
Q 008820 358 GSGDRTIKAWSLLDGTLSCTMSGHKS------------------------AVSTLAVC-NG--VLYSGSRDGTIRLWSLS 410 (552)
Q Consensus 358 gs~dg~i~iwd~~~~~~~~~~~~h~~------------------------~v~~l~~~-~~--~l~s~~~dg~i~iwd~~ 410 (552)
++. .|++||+.+++.+..+..+.. ...+++++ ++ ..........+..+|..
T Consensus 164 ~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 241 (349)
T 1jmx_B 164 AGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 241 (349)
T ss_dssp ESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred ccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEecc
Confidence 543 499999999998877754320 12334443 11 00000001112224444
Q ss_pred CCceeEEEecCCCCceEEEEEEcC-CCCEEEEEECCCcEEEEeCCc--ceeeeecccceEEEEE--ecCCEEEEEeCCCe
Q 008820 411 DHSLLTVLEEDSSGAVSSVLSLTA-VQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAVF--LEGKWLFTGGWDKT 485 (552)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iwd~~~--~~~~~~~h~~~v~~v~--~~~~~l~sgs~dg~ 485 (552)
+++....-... .+.....++++| ++++++++ ++.|++||+.+ ....+... ..+.++. +++++|++++.++.
T Consensus 242 ~~~~~~~~~~~-~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~ 317 (349)
T 1jmx_B 242 TGKTHTQEFAD-LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFND 317 (349)
T ss_dssp TCCEEEEEEEE-CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSE
T ss_pred CCcEEeccccc-CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCe
Confidence 44321111111 122333468999 99999988 88999999764 33444322 2234444 48888888888999
Q ss_pred EEEEecCCCeeeeeec
Q 008820 486 VSVQELAGDEFEEDVI 501 (552)
Q Consensus 486 i~iwd~~~~~~~~~~~ 501 (552)
|++||+.+.+....+.
T Consensus 318 v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 318 LAVFNPDTLEKVKNIK 333 (349)
T ss_dssp EEEEETTTTEEEEEEE
T ss_pred EEEEeccccceeeeee
Confidence 9999999887665543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-14 Score=157.48 Aligned_cols=267 Identities=9% Similarity=-0.020 Sum_probs=168.6
Q ss_pred EEEEc-CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCC---CeEEEEEecCCCCEEEEEcC---------CCcEEEEeCC
Q 008820 257 GLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH---KVMAVVYVDEDQPLCISGDS---------GGGIFVWSFS 323 (552)
Q Consensus 257 ~l~~s-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~---~v~~v~~~~~~~~~l~s~~~---------dg~i~vwd~~ 323 (552)
+++|+ ...++..+.|++|++||+.+++....+.+|.. .+.+++|+|+++.+ ++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~l-a~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFV-YLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEE-EEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeE-EEEecCceeEEeecceEEEEEECC
Confidence 56777 22445555799999999999998877766544 48999999988755 55544 7899999998
Q ss_pred CCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEe-cCCCCCe-----------------
Q 008820 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM-SGHKSAV----------------- 385 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-~~h~~~v----------------- 385 (552)
+++...... ... .....+++|||+.|+++. ++.|++||+.+++..... .++...|
T Consensus 99 ~g~~~~~~~-l~~-----~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 99 NGEFVRGNE-LPR-----PIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp TTEECCSSC-CCS-----SBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred CCcccccee-cCc-----ccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence 765411011 111 112358999999998886 689999999888765432 2332222
Q ss_pred EEEEEe-CC-EEEEEeCCC----------------------------------cEEEEECCCCcee--EEEec-----CC
Q 008820 386 STLAVC-NG-VLYSGSRDG----------------------------------TIRLWSLSDHSLL--TVLEE-----DS 422 (552)
Q Consensus 386 ~~l~~~-~~-~l~s~~~dg----------------------------------~i~iwd~~~~~~~--~~~~~-----~~ 422 (552)
.+++|+ ++ .|++++.|. .|++||+.+++.. ..+.. .+
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 251 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS 251 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence 489999 44 888877652 7889999887653 12211 12
Q ss_pred CCceEEEEEEcCCCCEEEEEECC----CcEEEEe----CCc--ceeee----ecccceEE-----E--EEecCCEEEE--
Q 008820 423 SGAVSSVLSLTAVQHTLVVSHES----GSIKVWR----NDK--FMKSM----QTHKGSVF-----A--VFLEGKWLFT-- 479 (552)
Q Consensus 423 ~~~~~~~~~~s~~~~~l~~g~~d----g~i~iwd----~~~--~~~~~----~~h~~~v~-----~--v~~~~~~l~s-- 479 (552)
...+. .++|+||++++++.... ..|.+|| ... ....+ ..|...+. . +++||+.++.
T Consensus 252 ~~~~~-~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 330 (719)
T 1z68_A 252 DYYFS-WLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIF 330 (719)
T ss_dssp CEEEE-EEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEE
T ss_pred cceEE-EeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEE
Confidence 22333 36899998877775433 2488889 543 33333 35555544 3 4458885544
Q ss_pred EeCCC--eEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-CeEEEEeC-----CCeEEEEEecC
Q 008820 480 GGWDK--TVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-GKLFVGCA-----DRTVKIALCNR 538 (552)
Q Consensus 480 gs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~s~s~-----Dg~v~iw~~~~ 538 (552)
+..+| .|.+||+.+++... +... ...+..+.+.+ +.++..+. ++..++|.++.
T Consensus 331 ~~~~g~~~l~~~~~~~~~~~~-lt~~-----~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 331 SDKDGYKHIHYIKDTVENAIQ-ITSG-----KWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp ECTTSCEEEEEESSCSTTCEE-CSCS-----SSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EccCCceEEEEEECCCCceEe-cccC-----ceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeC
Confidence 44555 57777877665322 2211 22344444444 44665554 48899999874
|
| >3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A | Back alignment and structure |
|---|
Probab=99.62 E-value=9.5e-17 Score=165.74 Aligned_cols=107 Identities=16% Similarity=0.170 Sum_probs=75.8
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|++ |+|+.+.... ...++|||.|||||++ .+ ...++.++|+|||||+|||||||+ ||
T Consensus 330 ~vKL~DFGlA~~~~~~~----~~t~~GTp~YmAPEvl------~~--------~~~y~~~vDiWSLGvilYEmLtG~~PF 391 (689)
T 3v5w_A 330 HVRISDLGLACDFSKKK----PHASVGTHGYMAPEVL------QK--------GVAYDSSADWFSLGCMLFKLLRGHSPF 391 (689)
T ss_dssp CEEECCCTTCEECSSCC----CCSCCSCGGGCCHHHH------ST--------TCCCCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred CEEecccceeeecCCCC----CCCccCCcCccCHHHH------hC--------CCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence 35666 8888876653 4578999999999999 21 235788999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcch
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~ 155 (552)
.+...... ..+...+.......+....+++.+++.+||+++|.+|++.
T Consensus 392 ~~~~~~~~------------------~~i~~~i~~~~~~~p~~~S~~a~dLI~~lL~~dP~~Rl~~ 439 (689)
T 3v5w_A 392 RQHKTKDK------------------HEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGC 439 (689)
T ss_dssp CGGGCCCH------------------HHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCGGGCTTC
T ss_pred CCCChHHH------------------HHHHHhhcCCCCCCCccCCHHHHHHHHHHccCCHhHCCCC
Confidence 76543310 0111222222222223345669999999999999999984
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-14 Score=153.44 Aligned_cols=307 Identities=8% Similarity=0.017 Sum_probs=185.1
Q ss_pred eeeecCcceEEEeeCCCeEEEEEee---------cCcc---ceEEEEEc--CCEEEEEeC---------CCcEEEEeCCC
Q 008820 225 ARAAGGVKDLVNGLSKGNVKFKDLQ---------GHRD---CVTGLAVG--GGFLFSSSF---------DKSIHVWSLKD 281 (552)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~l~---------~H~~---~V~~l~~s--~~~l~s~s~---------dg~I~iwd~~~ 281 (552)
..+++++. ++....++.+.+|+.. +|.. .|.+++|+ |++|++++. |+.|++||+.+
T Consensus 21 ~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 21 PNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred cEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 34445553 3333346666666643 2332 38899999 899998876 78999999999
Q ss_pred CeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCc---------------eeeeEE
Q 008820 282 FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDW---------------RYSGIH 346 (552)
Q Consensus 282 ~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 346 (552)
++.+... .....+..++|+|+++.++. + .|+.|++||+.++........ ..... ......
T Consensus 100 g~~~~~~-~l~~~~~~~~~SPDG~~la~-~-~~~~i~~~~~~~g~~~~l~~~--~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 100 GEFVRGN-ELPRPIQYLCWSPVGSKLAY-V-YQNNIYLKQRPGDPPFQITFN--GRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp TEECCSS-CCCSSBCCEEECSSTTCEEE-E-ETTEEEEESSTTSCCEECCCC--CBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred Cccccce-ecCcccccceECCCCCEEEE-E-ECCeEEEEeCCCCCcEEEecC--CCcCCeEcccccceeeeecccCcccE
Confidence 8763111 11356889999999886644 4 378999999987654321111 11000 001246
Q ss_pred EEeeCCCEEEEeeCCC----------------------------------cEEEEECCCCcee--------EEecCCCCC
Q 008820 347 ALTTSGRYLYTGSGDR----------------------------------TIKAWSLLDGTLS--------CTMSGHKSA 384 (552)
Q Consensus 347 ~~~~~~~~l~sgs~dg----------------------------------~i~iwd~~~~~~~--------~~~~~h~~~ 384 (552)
+|+|||+.|++++.|. .|++||+.+++.. ..+.+|...
T Consensus 175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 254 (719)
T 1z68_A 175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY 254 (719)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence 8999999999887652 7889999887753 123468888
Q ss_pred eEEEEEe-CC-EEEEEeCC----CcEEEEE----CCCCceeEEEe---cCCCCceE----EEEEEcCCCCEEEE--EECC
Q 008820 385 VSTLAVC-NG-VLYSGSRD----GTIRLWS----LSDHSLLTVLE---EDSSGAVS----SVLSLTAVQHTLVV--SHES 445 (552)
Q Consensus 385 v~~l~~~-~~-~l~s~~~d----g~i~iwd----~~~~~~~~~~~---~~~~~~~~----~~~~~s~~~~~l~~--g~~d 445 (552)
+.+++|+ ++ ++++.... ..|.+|| +.+++....+. ..+.+.+. ....|+|||+.++. +..+
T Consensus 255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 334 (719)
T 1z68_A 255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD 334 (719)
T ss_dssp EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC
Confidence 9999999 55 44443322 2488999 77776544332 22223222 12589999986554 4455
Q ss_pred C--cEEEEeCCc-ceeeeecccceEEEEEe-cCCEEEEEeCC-----CeEEEEecCC--CeeeeeeccCCCcccCcceEE
Q 008820 446 G--SIKVWRNDK-FMKSMQTHKGSVFAVFL-EGKWLFTGGWD-----KTVSVQELAG--DEFEEDVIPTGAIPCGSVITA 514 (552)
Q Consensus 446 g--~i~iwd~~~-~~~~~~~h~~~v~~v~~-~~~~l~sgs~d-----g~i~iwd~~~--~~~~~~~~~~~~~~~~~~v~~ 514 (552)
| .|++||... ....+..+...+..+.+ +++.|+..+.+ +..++|.+.. +.............+...+..
T Consensus 335 g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~ 414 (719)
T 1z68_A 335 GYKHIHYIKDTVENAIQITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYT 414 (719)
T ss_dssp SCEEEEEESSCSTTCEECSCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEE
T ss_pred CceEEEEEECCCCceEecccCceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEE
Confidence 5 466667542 34455555555554332 78877776655 8889998753 311111111000002345677
Q ss_pred EEEeC--CeEE-EEeCC--CeEEEEEec
Q 008820 515 LLYWQ--GKLF-VGCAD--RTVKIALCN 537 (552)
Q Consensus 515 l~~~~--~~l~-s~s~D--g~v~iw~~~ 537 (552)
+.|++ +.++ +++.+ ..+.+|++.
T Consensus 415 ~~~s~dg~~l~~~~s~~~~p~~~l~d~~ 442 (719)
T 1z68_A 415 ASFSDYAKYYALVCYGPGIPISTLHDGR 442 (719)
T ss_dssp EEECGGGSSEEEEECCBSSCEEEEECSS
T ss_pred EEECCCCCEEEEEcCCCCCCeEEEEECC
Confidence 88884 3344 44443 567888875
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.4e-17 Score=169.14 Aligned_cols=112 Identities=22% Similarity=0.205 Sum_probs=78.4
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+|+.+..... +...+|||.|||||++ .| ..++.++|||||||+|||||+|+ ||.
T Consensus 296 vKl~DFG~a~~~~~~~~---~~~~~GT~~y~APEv~------~~---------~~y~~~~DiWSlGvilyeml~G~~Pf~ 357 (573)
T 3uto_A 296 LKLIDFGLTAHLDPKQS---VKVTTGTAEFAAPEVA------EG---------KPVGYYTDMWSVGVLSYILLSGLSPFG 357 (573)
T ss_dssp EEECCCSSCEECCTTSE---EEEECSSGGGCCHHHH------TT---------CCBCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred EEEeeccceeEccCCCc---eeeeEECccccCHHHh------CC---------CCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence 4555 88888776543 5678999999999999 33 45778999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
+.+...+. ..+.......+.........++.+++.+||+++|.+||++.++.+
T Consensus 358 ~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 358 GENDDETL-----------------RNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALE 410 (573)
T ss_dssp CSSHHHHH-----------------HHHHTTCCCCCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CcCHHHHH-----------------HHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 65433210 000000000111122233456889999999999999999887655
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-12 Score=124.41 Aligned_cols=235 Identities=11% Similarity=0.191 Sum_probs=160.8
Q ss_pred ecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEe------CCCCCeEEEEEecCCCCEEEEEcC-CCcEEE
Q 008820 249 QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFK------GHDHKVMAVVYVDEDQPLCISGDS-GGGIFV 319 (552)
Q Consensus 249 ~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~------~h~~~v~~v~~~~~~~~~l~s~~~-dg~i~v 319 (552)
.+|-..+.+++++ ++++++.+.++.|++||.+ ++.+..+. +|...+..+++.+.++.++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3566789999998 7888888889999999976 66666664 244678999996545556666543 899999
Q ss_pred EeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEec--CCCCCeEEEEEe-CC-EE
Q 008820 320 WSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMS--GHKSAVSTLAVC-NG-VL 395 (552)
Q Consensus 320 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~-~~-~l 395 (552)
||.. +... ..+..... ....-.++.++++.+++...++.|.+||. +++.+..+. .+...+.+++++ ++ ++
T Consensus 105 ~d~~-g~~~---~~~~~~~~-~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 105 YNQY-GQFV---RKFGATIL-QHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIF 178 (286)
T ss_dssp ECTT-SCEE---EEECTTTC-SCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEE
T ss_pred ECCC-CcEE---EEecCccC-CCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEE
Confidence 9943 3222 22211111 11123467788888887778899999996 466666654 345678999999 45 55
Q ss_pred EEEeCCCcEEEEECCCCceeEEEecCC-CCceEEEEEEcCCCCEEEEEECCC-cEEEEeCC-cceeeeecccc--eEEEE
Q 008820 396 YSGSRDGTIRLWSLSDHSLLTVLEEDS-SGAVSSVLSLTAVQHTLVVSHESG-SIKVWRND-KFMKSMQTHKG--SVFAV 470 (552)
Q Consensus 396 ~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg-~i~iwd~~-~~~~~~~~h~~--~v~~v 470 (552)
++...++.|++||. +++.+..+.... ..... .++++++|+++++...++ .|.+||.. +.+..+..+.. .+.++
T Consensus 179 v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~-~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i 256 (286)
T 1q7f_A 179 ISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPI-GVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDV 256 (286)
T ss_dssp EEEGGGTEEEEEET-TCCEEEEESCTTTSCSEE-EEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEE
T ss_pred EEECCCCEEEEEcC-CCCEEEEEccCCccCCCc-EEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeE
Confidence 55567899999997 456666664331 12333 378999999888887776 99999954 34555554432 35555
Q ss_pred Ee--cCCEEEEEeCCCeEEEEecCC
Q 008820 471 FL--EGKWLFTGGWDKTVSVQELAG 493 (552)
Q Consensus 471 ~~--~~~~l~sgs~dg~i~iwd~~~ 493 (552)
.+ +|+++++ +.|+.|++|++..
T Consensus 257 ~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 257 ALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EECCCCcEEEE-CCCCeEEEEEccc
Confidence 54 7776666 6799999999864
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=8.5e-13 Score=130.26 Aligned_cols=265 Identities=11% Similarity=0.055 Sum_probs=162.3
Q ss_pred EEEEEeCC--CcEEEEeC--CCCeEEE--EEe-CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC-CCCCCccccccc
Q 008820 264 FLFSSSFD--KSIHVWSL--KDFSHVH--TFK-GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS-FPLGHEPLKKWN 335 (552)
Q Consensus 264 ~l~s~s~d--g~I~iwd~--~~~~~~~--~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~ 335 (552)
+++.|+.. +.|.+|++ .+++... ... .....+..++|+|++. ++++++.+ .|.+|++. +++... +....
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~-~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~ 80 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERK-NIYGAAMK-KWSSFAVKSPTEIVH-EASHP 80 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSS-EEEEEEBT-EEEEEEEEETTEEEE-EEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCC-EEEEEccc-eEEEEEECCCCCEEE-eeEee
Confidence 45566653 46877764 5665432 221 2345678899999776 55677766 99999987 443211 11111
Q ss_pred cCCCceeeeEEEEeeCCCE--EEEee-------------CCCcEEEEECC-CCceeEEec----CCCCCeEEEEEe-CC-
Q 008820 336 EEKDWRYSGIHALTTSGRY--LYTGS-------------GDRTIKAWSLL-DGTLSCTMS----GHKSAVSTLAVC-NG- 393 (552)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~--l~sgs-------------~dg~i~iwd~~-~~~~~~~~~----~h~~~v~~l~~~-~~- 393 (552)
... .. ...+++|+++. +++++ .+|.+.+|++. +++....+. .+...+.+++|+ ++
T Consensus 81 ~~g--~~-~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~ 157 (365)
T 1jof_A 81 IGG--HP-RANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET 157 (365)
T ss_dssp CCS--SG-GGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred cCC--CC-ccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC
Confidence 000 01 11367888984 55553 68999999997 466554443 255678999999 44
Q ss_pred EEEEEe-CCCcEEEEECC-CCcee--EEEecCC-CCceEEEEEEcCCCCEEEEEEC-CCcEEEEeCC----cce---eee
Q 008820 394 VLYSGS-RDGTIRLWSLS-DHSLL--TVLEEDS-SGAVSSVLSLTAVQHTLVVSHE-SGSIKVWRND----KFM---KSM 460 (552)
Q Consensus 394 ~l~s~~-~dg~i~iwd~~-~~~~~--~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~----~~~---~~~ 460 (552)
+++++. .++.|++||+. +++.. ..+.... ...... ++|+|+|+++++++. ++.|.+|+.. +.. ..+
T Consensus 158 ~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~-~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~ 236 (365)
T 1jof_A 158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW-VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSF 236 (365)
T ss_dssp EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE-EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE-eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceE
Confidence 677665 46899999998 67653 2333211 222333 699999999988775 6899999742 221 112
Q ss_pred e-------cccc------eEEEEE---ecCCEEEEEeCC-C-----eEEEEecC-CCeeeeee--ccCCCcccCcceEEE
Q 008820 461 Q-------THKG------SVFAVF---LEGKWLFTGGWD-K-----TVSVQELA-GDEFEEDV--IPTGAIPCGSVITAL 515 (552)
Q Consensus 461 ~-------~h~~------~v~~v~---~~~~~l~sgs~d-g-----~i~iwd~~-~~~~~~~~--~~~~~~~~~~~v~~l 515 (552)
. +|.. .+..+. +||++|++++.+ + .|.+|++. ++++.... .... ......+
T Consensus 237 ~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~----~~~~~~~ 312 (365)
T 1jof_A 237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP----TSGGHSN 312 (365)
T ss_dssp ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS----SCCTTCC
T ss_pred EcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC----CCCcccc
Confidence 1 2222 455555 489988877643 2 89999996 55543211 1100 1223445
Q ss_pred EEeC----C-eEEEEeC-CCeEEEEEecCC
Q 008820 516 LYWQ----G-KLFVGCA-DRTVKIALCNRQ 539 (552)
Q Consensus 516 ~~~~----~-~l~s~s~-Dg~v~iw~~~~~ 539 (552)
+|+| + .|++++. ++.|++|+++..
T Consensus 313 a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 313 AVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred eecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 6665 3 5777776 499999999854
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.2e-13 Score=131.81 Aligned_cols=244 Identities=11% Similarity=0.106 Sum_probs=157.5
Q ss_pred CccceEEEEEc--CCEEEEEeCCCcEEEEeCC-CCeEEEEEeC-CCCCeEEEEEecCCCC-EEEEEc-------------
Q 008820 251 HRDCVTGLAVG--GGFLFSSSFDKSIHVWSLK-DFSHVHTFKG-HDHKVMAVVYVDEDQP-LCISGD------------- 312 (552)
Q Consensus 251 H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~-~~~~~~~~~~-h~~~v~~v~~~~~~~~-~l~s~~------------- 312 (552)
+...+..++|+ +++|++++.+ .|.+|++. +++....... ..+.+..++|+|++.. ++++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 44568889998 8889999888 99999997 7876544321 1123556889998775 345553
Q ss_pred CCCcEEEEeCCC-CCCCccccccccCCCceeeeEEEEeeCCCEEEEee-CCCcEEEEECC-CCcee--EEec--CCCCCe
Q 008820 313 SGGGIFVWSFSF-PLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS-GDRTIKAWSLL-DGTLS--CTMS--GHKSAV 385 (552)
Q Consensus 313 ~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs-~dg~i~iwd~~-~~~~~--~~~~--~h~~~v 385 (552)
.+|.+.+|+++. +.....+........ ......+++|+|++++++. .++.|++||+. +++.. ..+. .|...+
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p 195 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQEN-TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTT-CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCC-CcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence 689999999974 322222222110111 1122347899999887765 46899999998 77653 2333 246678
Q ss_pred EEEEEe-CC-EEEEEeC-CCcEEEEECC--CCcee---EEEecCCC---C-c-------eEEEEE-EcCCCCEEEEEECC
Q 008820 386 STLAVC-NG-VLYSGSR-DGTIRLWSLS--DHSLL---TVLEEDSS---G-A-------VSSVLS-LTAVQHTLVVSHES 445 (552)
Q Consensus 386 ~~l~~~-~~-~l~s~~~-dg~i~iwd~~--~~~~~---~~~~~~~~---~-~-------~~~~~~-~s~~~~~l~~g~~d 445 (552)
..++|+ ++ ++++++. +++|.+|++. +++.. ..+..... + . ....++ ++|||++|++++.+
T Consensus 196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 999999 44 7777664 7899999875 56543 22322111 1 1 233368 99999998877643
Q ss_pred C------cEEEEeCCc--ceee----eeccc--ceEEEEEe---cCCEEEEEeCC-CeEEEEecCCCee
Q 008820 446 G------SIKVWRNDK--FMKS----MQTHK--GSVFAVFL---EGKWLFTGGWD-KTVSVQELAGDEF 496 (552)
Q Consensus 446 g------~i~iwd~~~--~~~~----~~~h~--~~v~~v~~---~~~~l~sgs~d-g~i~iwd~~~~~~ 496 (552)
. .|.+|++.. .+.. ...+. ..-.++++ +|++|++++.+ +.|++|++....+
T Consensus 276 ~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l 344 (365)
T 1jof_A 276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred CCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhhC
Confidence 2 899998641 2221 22222 22245677 79999999875 8999999976633
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.3e-13 Score=129.18 Aligned_cols=249 Identities=9% Similarity=-0.003 Sum_probs=158.6
Q ss_pred CCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCC--Cc--EEEEeCCCCCCCccccccccCCCceeeeEE
Q 008820 271 DKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSG--GG--IFVWSFSFPLGHEPLKKWNEEKDWRYSGIH 346 (552)
Q Consensus 271 dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d--g~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (552)
++.|.+||+.+++... + ..+..++|+|++..++++...+ +. |.+||+.++....... . . . ....
T Consensus 42 ~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~---~-~--~-~~~~ 109 (347)
T 2gop_A 42 ENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE---A-K--N-IRSL 109 (347)
T ss_dssp EEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE---E-S--E-EEEE
T ss_pred cceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc---C-C--C-ccce
Confidence 5679999999887543 3 5688999999888665554432 33 7777876543221111 1 1 1 2345
Q ss_pred EEeeCCCEEEEeeCC---------------------------CcEEEEECCCCceeEEecCCCCCeEEEEEe-CCEEEEE
Q 008820 347 ALTTSGRYLYTGSGD---------------------------RTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NGVLYSG 398 (552)
Q Consensus 347 ~~~~~~~~l~sgs~d---------------------------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~ 398 (552)
.++|+++.|+.++.+ ..|++||+.+++.+..+.. . .+..+.|+ +++++++
T Consensus 110 ~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~ 187 (347)
T 2gop_A 110 EWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNV 187 (347)
T ss_dssp EECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEE
T ss_pred eECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEE
Confidence 788999988877632 5799999998887455544 3 78899999 4466666
Q ss_pred eCCC-------cEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECC--------CcEEEEeCCcceeeeecc
Q 008820 399 SRDG-------TIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES--------GSIKVWRNDKFMKSMQTH 463 (552)
Q Consensus 399 ~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d--------g~i~iwd~~~~~~~~~~h 463 (552)
..++ ...+|.+.+++. ..+..+ ... ..++|+|+.|+.++.+ ..|++||.++.......|
T Consensus 188 ~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~--~~~---~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~~ 261 (347)
T 2gop_A 188 PHREIIPQYFKFWDIYIWEDGKE-EKMFEK--VSF---YAVDSDGERILLYGKPEKKYMSEHNKLYIYDGKEVMGILDEV 261 (347)
T ss_dssp ECCCSSCCSSCCEEEEEEETTEE-EEEEEE--ESE---EEEEECSSCEEEEECCSSSCCCSSCEEEEECSSCEEESSTTC
T ss_pred ecccccccccccccEEEeCCCce-EEeccC--cce---eeECCCCCEEEEEEccccCCccccceEEEECCCceEeccccC
Confidence 5542 344444445443 333322 222 2349999988877754 468888822333334456
Q ss_pred cceEEE-EEe-cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCeEEEEeCCCeE-EEEEecCCc
Q 008820 464 KGSVFA-VFL-EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTV-KIALCNRQI 540 (552)
Q Consensus 464 ~~~v~~-v~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v-~iw~~~~~~ 540 (552)
...+.. +.| ++ .+++++.++.+++| +.+++...... ....|.+++|++..+++++.++.. .+|.++ +
T Consensus 262 ~~~~~~~~~~sdg-~~~~~~~~~~~~l~-~~~g~~~~~~~------~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~--g 331 (347)
T 2gop_A 262 DRGVGQAKIKDGK-VYFTLFEEGSVNLY-IWDGEIKPIAK------GRHWIMGFDVDEIVVYLKETATRLRELFTWD--G 331 (347)
T ss_dssp CSEEEEEEEETTE-EEEEEEETTEEEEE-EESSSEEEEEC------SSSEEEEEEESSSEEEEEECSSSCCEEEEES--S
T ss_pred CcccCCccEEcCc-EEEEEecCCcEEEE-EcCCceEEEec------CCCeEEeeeeeCcEEEEEcCCCChHHheEeC--C
Confidence 677775 666 56 88899999999999 87544322221 145688999999336677777765 888887 2
Q ss_pred ceeEEEeccc
Q 008820 541 PEIFSLLLHI 550 (552)
Q Consensus 541 ~~~~~~~gh~ 550 (552)
...++..|.
T Consensus 332 -~~~~lt~~n 340 (347)
T 2gop_A 332 -EEKQLTDYN 340 (347)
T ss_dssp -SEEECCCTT
T ss_pred -cEEEecccc
Confidence 355565553
|
| >4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-16 Score=151.79 Aligned_cols=45 Identities=31% Similarity=0.421 Sum_probs=36.6
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
++..+|||.|||||++ .| ...++.++|||||||+|||||||+ ||.
T Consensus 203 ~~~~~GT~~Y~APE~l------~~--------~~~y~~~~DiWSlG~il~ell~G~~Pf~ 248 (361)
T 4f9c_A 203 VAPRAGTPGFRAPEVL------TK--------CPNQTTAIDMWSAGVIFLSLLSGRYPFY 248 (361)
T ss_dssp ---CCCCGGGCCHHHH------TT--------CSCCCTHHHHHHHHHHHHHHHHTCSSSS
T ss_pred ccccccCccccCHHHH------cC--------CCCCCCccchhhhHHHHHHHHHCCCCCC
Confidence 4567899999999999 33 234678999999999999999999 993
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-12 Score=126.92 Aligned_cols=239 Identities=12% Similarity=0.080 Sum_probs=161.6
Q ss_pred cceEEEEEc--CCEEEEEeCC------------------------CcEEEEeCCCCeEEEEEe-CCCCCeEEEEEecCCC
Q 008820 253 DCVTGLAVG--GGFLFSSSFD------------------------KSIHVWSLKDFSHVHTFK-GHDHKVMAVVYVDEDQ 305 (552)
Q Consensus 253 ~~V~~l~~s--~~~l~s~s~d------------------------g~I~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~~ 305 (552)
+.+.+++++ |+++++.+.+ ++|.+||..+++.+..+. ++-.....+++.+++.
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 557777777 6666666655 579999999999877665 3456789999998776
Q ss_pred CEEEEEcCCCcEEEEeCCCCC-CCccccccc--c--CCCceeeeEEEEee-CCCEEEEee-CCCcEEEEECCCCceeEEe
Q 008820 306 PLCISGDSGGGIFVWSFSFPL-GHEPLKKWN--E--EKDWRYSGIHALTT-SGRYLYTGS-GDRTIKAWSLLDGTLSCTM 378 (552)
Q Consensus 306 ~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~--~--~~~~~~~~~~~~~~-~~~~l~sgs-~dg~i~iwd~~~~~~~~~~ 378 (552)
++++...++.|++||.+... ....+.... . ........-.++++ +++.+++.+ .++.|++|| .+++.+..+
T Consensus 104 -l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 104 -YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp -EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred -EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 77888889999999976431 111111000 0 01111122347777 677777776 689999999 577777776
Q ss_pred cCC----------CCCeEEEEEe-C-C-EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcC------CCCEE
Q 008820 379 SGH----------KSAVSTLAVC-N-G-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA------VQHTL 439 (552)
Q Consensus 379 ~~h----------~~~v~~l~~~-~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~~l 439 (552)
... -.....++++ + + ++++...++.|++||..+++.+..+.....+.....++++| +++..
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~ 261 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPY 261 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEE
Confidence 422 2347899998 4 5 55566678899999999899888886443332333367888 33322
Q ss_pred EEEECCCcEEEEeCC--cceeee---ecccceEEEEEe--cCCEEEEEeCCCeEEEEecCC
Q 008820 440 VVSHESGSIKVWRND--KFMKSM---QTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAG 493 (552)
Q Consensus 440 ~~g~~dg~i~iwd~~--~~~~~~---~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~ 493 (552)
++...+..|++||.. +.+..+ ..+......+++ +|..+++...++.|++|++..
T Consensus 262 v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 262 FGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp TTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred eccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 233345589999954 445554 355666777776 787888888899999999864
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=5e-12 Score=120.03 Aligned_cols=242 Identities=10% Similarity=0.141 Sum_probs=156.4
Q ss_pred CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcccccccc-CCCceeeeEEEE-eeCCCEEEEeeC-CCcEEE
Q 008820 290 GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNE-EKDWRYSGIHAL-TTSGRYLYTGSG-DRTIKA 366 (552)
Q Consensus 290 ~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~l~sgs~-dg~i~i 366 (552)
++-..+.++++.+++. ++++...++.|.+||.+. .....+..... ..........++ .++++.+++... ++.|.+
T Consensus 27 g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCC-EEEEECCCCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3456789999988764 778888899999999762 22111111000 000011122344 345555555533 789999
Q ss_pred EECCCCceeEEec-CCCCCeEEEEEe-CC-EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEE
Q 008820 367 WSLLDGTLSCTMS-GHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH 443 (552)
Q Consensus 367 wd~~~~~~~~~~~-~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 443 (552)
|| .+++.+..+. .+...+.+++++ ++ ++++...++.|.+||. +++.+..+...........++++++++++++..
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence 99 5777777664 344578899998 44 5566667899999996 466666664321222233479999999888777
Q ss_pred CCCcEEEEeCCc-ceeeeecc--cceEEEEEe--cCCEEEEEeCCC-eEEEEecCCCeeeeeeccCCCcccCcceEEEEE
Q 008820 444 ESGSIKVWRNDK-FMKSMQTH--KGSVFAVFL--EGKWLFTGGWDK-TVSVQELAGDEFEEDVIPTGAIPCGSVITALLY 517 (552)
Q Consensus 444 ~dg~i~iwd~~~-~~~~~~~h--~~~v~~v~~--~~~~l~sgs~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 517 (552)
.++.|++||... .+..+..+ ...+..+.+ +|+++++...++ .|++||..+. ....+..... ...+.++++
T Consensus 183 ~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~-~~~~~~~~~~---~~~~~~i~~ 258 (286)
T 1q7f_A 183 RAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-LISALESKVK---HAQCFDVAL 258 (286)
T ss_dssp GGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC-EEEEEEESSC---CSCEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC-EEEEEcccCC---CCcceeEEE
Confidence 899999999643 34444333 345666665 788888887776 9999997654 3333322211 234678899
Q ss_pred eC-CeEEEEeCCCeEEEEEecCC
Q 008820 518 WQ-GKLFVGCADRTVKIALCNRQ 539 (552)
Q Consensus 518 ~~-~~l~s~s~Dg~v~iw~~~~~ 539 (552)
++ +.+++++.|+.|++|++...
T Consensus 259 ~~~g~l~vs~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 259 MDDGSVVLASKDYRLYIYRYVQL 281 (286)
T ss_dssp ETTTEEEEEETTTEEEEEECSCC
T ss_pred CCCCcEEEECCCCeEEEEEcccc
Confidence 84 66776688999999998743
|
| >3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.5e-16 Score=155.74 Aligned_cols=115 Identities=19% Similarity=0.258 Sum_probs=79.0
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p 88 (552)
...|+. |+++.+..... ......|||.|||||++ . ...+++++|||||||+||+|++|+ |
T Consensus 150 ~~vkL~DFG~a~~~~~~~~--~~~~~~gt~~Y~APE~l------~---------~~~~~~~~DIwSlGvilyell~G~~P 212 (444)
T 3soa_A 150 AAVKLADFGLAIEVEGEQQ--AWFGFAGTPGYLSPEVL------R---------KDPYGKPVDLWACGVILYILLVGYPP 212 (444)
T ss_dssp CCEEECCCSSCBCCCTTCC--BCCCSCSCGGGCCHHHH------T---------TCCBCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CcEEEccCceeEEecCCCc--eeecccCCcccCCHHHh------c---------CCCCCCccccHHHHHHHHHHHhCCCC
Confidence 345666 66766655433 25678999999999999 2 245778999999999999999999 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
|.......+ ...+.......+.+.+.....++.+++.+||+.+|.+||++.++.+
T Consensus 213 f~~~~~~~~-----------------~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 213 FWDEDQHRL-----------------YQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALK 267 (444)
T ss_dssp CCCSSHHHH-----------------HHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCCccHHHH-----------------HHHHHhCCCCCCccccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 965443311 0111111111122222334556999999999999999999987765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-12 Score=128.83 Aligned_cols=262 Identities=8% Similarity=0.028 Sum_probs=172.4
Q ss_pred CCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEc---------CCCcEEEEeCCCCCCCccccccccCC-C
Q 008820 270 FDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGD---------SGGGIFVWSFSFPLGHEPLKKWNEEK-D 339 (552)
Q Consensus 270 ~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~-~ 339 (552)
.|+.|.+||..+++.+.++..+..+ .++|+|++..+.++.. .++.|.+||..+.+....+....... .
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 4789999999999999998877665 8999998875555442 36789999988665444333221110 0
Q ss_pred ceeeeEEEEeeCCCEEEEeeC--CCcEEEEECCCCceeEE-ecCCCCCeEEEEEe-C--CEEEEEeCCCcEEEEECCC-C
Q 008820 340 WRYSGIHALTTSGRYLYTGSG--DRTIKAWSLLDGTLSCT-MSGHKSAVSTLAVC-N--GVLYSGSRDGTIRLWSLSD-H 412 (552)
Q Consensus 340 ~~~~~~~~~~~~~~~l~sgs~--dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~-~--~~l~s~~~dg~i~iwd~~~-~ 412 (552)
.....-.+++++|++|+++.. +++|.+||+.+++.+.. +.. .. ...+.+. + ..+++.+.||.+.+|++.. +
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g 184 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDG 184 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence 011123578999999988864 68999999999998887 553 22 2223444 2 3788899999999999865 5
Q ss_pred ceeEEEec-----CCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcc----eeeeec------------ccceEEEEE
Q 008820 413 SLLTVLEE-----DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF----MKSMQT------------HKGSVFAVF 471 (552)
Q Consensus 413 ~~~~~~~~-----~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~------------h~~~v~~v~ 471 (552)
+....... ....... +.+++++..++..+.++.|+++|.... ...+.. .......++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~ 262 (361)
T 2oiz_A 185 KVASQSRSKQMFSVKDDPIF--IAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH 262 (361)
T ss_dssp SEEEEEECCCCSCTTTSCBC--SCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred cEeeeccccceEcCCCCceE--EEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe
Confidence 54422210 0011111 234677777777788999999996421 111110 111124566
Q ss_pred ecCCEEEEEeC-----------CCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEEeCCCeEEEEEecC
Q 008820 472 LEGKWLFTGGW-----------DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGCADRTVKIALCNR 538 (552)
Q Consensus 472 ~~~~~l~sgs~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~Dg~v~iw~~~~ 538 (552)
++++.++.+.. ++.|.+||+.+.+....+.. .. +.+++|++ .+|++++. +.|.+||..
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~------~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~- 333 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG------RD-ALSMTIDQQRNLMLTLDG-GNVNVYDIS- 333 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC------TT-CCEEEEETTTTEEEEECS-SCEEEEECS-
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec------CC-eeEEEECCCCCEEEEeCC-CeEEEEECC-
Confidence 78787776543 35899999999887766543 22 78899995 34777766 999999987
Q ss_pred Cc--ceeEEE
Q 008820 539 QI--PEIFSL 546 (552)
Q Consensus 539 ~~--~~~~~~ 546 (552)
+. +.+.++
T Consensus 334 t~~l~~~~~i 343 (361)
T 2oiz_A 334 QPEPKLLRTI 343 (361)
T ss_dssp SSSCEEEEEE
T ss_pred CCcceeeEEe
Confidence 44 555554
|
| >2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=6.6e-16 Score=151.59 Aligned_cols=113 Identities=16% Similarity=0.177 Sum_probs=76.3
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
-.|+. |+++.+..... .....|||.|||||++ . ...++.++|||||||+||+|++|+ ||
T Consensus 157 ~vkl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslGvil~~ll~g~~Pf 218 (361)
T 2yab_A 157 HIKLIDFGLAHEIEDGVE---FKNIFGTPEFVAPEIV------N---------YEPLGLEADMWSIGVITYILLSGASPF 218 (361)
T ss_dssp CEEECCCSSCEECCTTCC---CCCCCSCGGGCCHHHH------T---------TCCCCTHHHHHHHHHHHHHHHHSCCSS
T ss_pred CEEEEecCCceEcCCCCc---cccCCCCccEECchHH------c---------CCCCCccccHHHHHHHHHHHHhCCCCC
Confidence 35666 66766655432 5678899999999999 2 245678999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+.+...+. ..+.......+...+......+.+++.+||..+|.+||++.++.+
T Consensus 219 ~~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 219 LGDTKQETL-----------------ANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALR 272 (361)
T ss_dssp CCSSHHHHH-----------------HHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CCCCHHHHH-----------------HHHHhcCCCCCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 664433110 000000000011112234445899999999999999999877554
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-11 Score=122.40 Aligned_cols=288 Identities=15% Similarity=0.091 Sum_probs=185.1
Q ss_pred eEEEeeCCCeEEEEEeecC---------ccce-EEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEec
Q 008820 233 DLVNGLSKGNVKFKDLQGH---------RDCV-TGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVD 302 (552)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~H---------~~~V-~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~ 302 (552)
.+..........+|.+... ...+ ..+...+..++.++.++.|..+|.++|+.+................
T Consensus 64 ~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~- 142 (376)
T 3q7m_A 64 LVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS- 142 (376)
T ss_dssp EEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE-
T ss_pred eEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE-
Confidence 3333333334456766542 1223 3344558889999999999999999999998877543322222222
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCC
Q 008820 303 EDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHK 382 (552)
Q Consensus 303 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~ 382 (552)
++ .++.++.++.|..+|..+++............... ........+..++.++.++.+..+|..+++.+.......
T Consensus 143 -~~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~ 218 (376)
T 3q7m_A 143 -DG-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR--GESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQ 218 (376)
T ss_dssp -TT-EEEEECTTSEEEEEETTTCCEEEEEECCC-----C--CCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC
T ss_pred -CC-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec--CCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEeccc
Confidence 22 66778889999999998776544332211100000 000111235678888999999999999999988775321
Q ss_pred CC----------e-EEEEEeCCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEE
Q 008820 383 SA----------V-STLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW 451 (552)
Q Consensus 383 ~~----------v-~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 451 (552)
.. + ......++.++.++.++.+..+|.++++.+...... .... ...++..+++++.++.+..+
T Consensus 219 ~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~---~~~~---~~~~~~~l~~~~~~g~l~~~ 292 (376)
T 3q7m_A 219 ATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG---SVND---FIVDGNRIYLVDQNDRVMAL 292 (376)
T ss_dssp -----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC---CEEE---EEEETTEEEEEETTCCEEEE
T ss_pred CCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC---CCCC---ceEECCEEEEEcCCCeEEEE
Confidence 10 1 122334788999999999999999999988776532 1222 22346788888899999999
Q ss_pred eCCcc--eeeeec-ccceEEEEEecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCeEEEEeCC
Q 008820 452 RNDKF--MKSMQT-HKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCAD 528 (552)
Q Consensus 452 d~~~~--~~~~~~-h~~~v~~v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~D 528 (552)
|..+. ...... ...........+..|+.++.+|.|+++|..+++......... ..........++.|++++.|
T Consensus 293 d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~----~~~~~~~~~~~~~l~v~~~~ 368 (376)
T 3q7m_A 293 TIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDS----SGFQTEPVAADGKLLIQAKD 368 (376)
T ss_dssp ETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCT----TCBCSCCEEETTEEEEEBTT
T ss_pred ECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCC----CcceeCCEEECCEEEEEeCC
Confidence 96543 333321 122222333467889999999999999999988776554321 11122233458899999999
Q ss_pred CeEEEEE
Q 008820 529 RTVKIAL 535 (552)
Q Consensus 529 g~v~iw~ 535 (552)
|.|+.|+
T Consensus 369 G~l~~~~ 375 (376)
T 3q7m_A 369 GTVYSIT 375 (376)
T ss_dssp SCEEEEE
T ss_pred CEEEEEe
Confidence 9999987
|
| >2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-15 Score=145.22 Aligned_cols=126 Identities=12% Similarity=0.078 Sum_probs=84.6
Q ss_pred hhhcc--cccccccccchhh-----hhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh
Q 008820 13 VAKVG--CVGSRICDKEVGL-----FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI 85 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt 85 (552)
.+|+. |+++.+....... ....+.||+.|||||++ .| ..++.++|||||||+||||++
T Consensus 148 ~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~il~ell~ 212 (330)
T 2izr_A 148 VIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTH------LG---------KEQSRRDDLEALGHMFMYFLR 212 (330)
T ss_dssp SEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHH------TT---------CCCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHH------cC---------CCCCchhHHHHHHHHHHHHhc
Confidence 46777 6666554433210 13578999999999999 33 556789999999999999999
Q ss_pred CC-CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHh
Q 008820 86 GE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (552)
Q Consensus 86 g~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~ 164 (552)
|+ ||.......+. .....+.......+........+++.+++.+|++.+|.+||+..++.+.+..
T Consensus 213 g~~Pf~~~~~~~~~--------------~~~~~i~~~~~~~~~~~~~~~~p~~~~li~~~l~~~p~~RP~~~~l~~~l~~ 278 (330)
T 2izr_A 213 GSLPWQGLKADTLK--------------ERYQKIGDTKRATPIEVLCENFPEMATYLRYVRRLDFFEKPDYDYLRKLFTD 278 (330)
T ss_dssp SSCTTTTCCCSSHH--------------HHHHHHHHHHHHSCHHHHTTTCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHH
T ss_pred CCCCccccccccHH--------------HHHHHHHhhhccCCHHHHhccChHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 99 99763322110 1111222211111222222233479999999999999999999999998887
Q ss_pred hhc
Q 008820 165 LII 167 (552)
Q Consensus 165 ~~~ 167 (552)
+..
T Consensus 279 ~~~ 281 (330)
T 2izr_A 279 LFD 281 (330)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
|
| >3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-15 Score=141.55 Aligned_cols=129 Identities=10% Similarity=0.046 Sum_probs=85.4
Q ss_pred hhhhhhcc--cccccccccchh-----hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhh
Q 008820 10 TKSVAKVG--CVGSRICDKEVG-----LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLS 82 (552)
Q Consensus 10 ~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~ 82 (552)
.....|++ |+++.+...... .......||+.|||||++ .+ ..+++++|||||||+|||
T Consensus 143 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~ 207 (296)
T 3uzp_A 143 KGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTH------LG---------IEQSRRDDLESLGYVLMY 207 (296)
T ss_dssp GTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHH------TT---------CCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEeeCCCcccccccccccccccccccccccccccCChhhh------cC---------CCCCcchhhHHHHHHHHH
Confidence 34456676 556555544321 013577899999999999 33 456789999999999999
Q ss_pred hhhCC-CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHh-hhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 83 LLIGE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLE-NKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 83 lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
|++|+ ||....... .. .............+. ........++.+++.+||+.+|.+||++.++.+
T Consensus 208 l~~g~~pf~~~~~~~-----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~ 273 (296)
T 3uzp_A 208 FNLGSLPWQGLKAAT-----KR---------QKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQ 273 (296)
T ss_dssp HHHSSCTTSSCCCSS-----SS---------SHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHH
T ss_pred HHhCCCCCCCcCchh-----hh---------hhhhhhcccccCCchHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHH
Confidence 99999 997632220 00 001111121111111 111234456999999999999999999999999
Q ss_pred HHHhhhc
Q 008820 161 CIRELII 167 (552)
Q Consensus 161 ~l~~~~~ 167 (552)
.+..+..
T Consensus 274 ~l~~~~~ 280 (296)
T 3uzp_A 274 LFRNLFH 280 (296)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988763
|
| >2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-15 Score=147.86 Aligned_cols=113 Identities=16% Similarity=0.197 Sum_probs=75.4
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
-.|+. |+++.+..... .....||+.|||||++ . ...++.++|||||||+||+|++|+ ||
T Consensus 156 ~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslG~il~~ll~g~~pf 217 (326)
T 2y0a_A 156 RIKIIDFGLAHKIDFGNE---FKNIFGTPEFVAPEIV------N---------YEPLGLEADMWSIGVITYILLSGASPF 217 (326)
T ss_dssp CEEECCCTTCEECCTTSC---CCCCCSCTTTCCHHHH------T---------TCCCCTHHHHHHHHHHHHHHHHSCCSS
T ss_pred CEEEEECCCCeECCCCCc---cccccCCcCcCCceee------c---------CCCCCcHHHHHHHHHHHHHHHHCcCCC
Confidence 45666 56666543322 5677899999999998 2 255678999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+.....+. ..........+..........+.+++.+||+.+|.+||++.++.+
T Consensus 218 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 218 LGDTKQETL-----------------ANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp CCSSHHHHH-----------------HHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred CCCCHHHHH-----------------HHHHhcCCCcCccccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 654332110 000000000011111223445889999999999999999888765
|
| >4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-15 Score=141.15 Aligned_cols=130 Identities=10% Similarity=0.044 Sum_probs=85.7
Q ss_pred hhhhhhhcc--cccccccccchh-----hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhh
Q 008820 9 VTKSVAKVG--CVGSRICDKEVG-----LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILL 81 (552)
Q Consensus 9 ~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~ 81 (552)
......|+. |+++.+...... .......||+.|||||++ .+ ..+++++|||||||+||
T Consensus 142 ~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~il~ 206 (296)
T 4hgt_A 142 KKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTH------LG---------IEQSRRDDLESLGYVLM 206 (296)
T ss_dssp GGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHH------TT---------CCCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEecCccceeccCcccCccCCCCcccccCCCccccchHHh------cC---------CCCCchhHHHHHHHHHH
Confidence 344456666 556555443221 123467899999999999 32 45678999999999999
Q ss_pred hhhhCC-CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhh-hhcCccccHHHHHHhhcccCCCCCcchhhHH
Q 008820 82 SLLIGE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLEN-KFGSEFVSLQLMFCQCLNFDPGCRPLLTNVW 159 (552)
Q Consensus 82 ~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~ 159 (552)
+|++|+ ||........ . .............+.. .......++.+++.+||+.+|.+||++.++.
T Consensus 207 ~l~~g~~pf~~~~~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~ 272 (296)
T 4hgt_A 207 YFNLGSLPWQGLKAATK-----R---------QKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLR 272 (296)
T ss_dssp HHHHSSCTTSSCCCSSS-----S---------SHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHH
T ss_pred HHhcCCCCCcccchhhh-----h---------hhhhhhhcccccchhhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHH
Confidence 999999 9976332200 0 0011111111111111 1122345699999999999999999999999
Q ss_pred HHHHhhhc
Q 008820 160 KCIRELII 167 (552)
Q Consensus 160 ~~l~~~~~ 167 (552)
+.+..+..
T Consensus 273 ~~l~~~~~ 280 (296)
T 4hgt_A 273 QLFRNLFH 280 (296)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-11 Score=121.80 Aligned_cols=274 Identities=11% Similarity=0.079 Sum_probs=183.3
Q ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCC---------CCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCC
Q 008820 258 LAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHD---------HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328 (552)
Q Consensus 258 l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~---------~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 328 (552)
....+..++.++.++.|..+|.++++.+..+.... ..+.+..... ++ .++.++.++.|..+|..+++..
T Consensus 49 p~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~v~~~~g~l~a~d~~tG~~~ 126 (376)
T 3q7m_A 49 PALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVS-GG-HVYIGSEKAQVYALNTSDGTVA 126 (376)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEE-TT-EEEEEETTSEEEEEETTTCCEE
T ss_pred cEEECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEe-CC-EEEEEcCCCEEEEEECCCCCEE
Confidence 34458888899999999999999999988876532 2332222222 33 5677888999999999887654
Q ss_pred ccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCe-----EEEEEeCCEEEEEeCCCc
Q 008820 329 EPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAV-----STLAVCNGVLYSGSRDGT 403 (552)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v-----~~l~~~~~~l~s~~~dg~ 403 (552)
......... ... ....+..+++++.++.|..+|..+|+.+.......... ......++.++.++.++.
T Consensus 127 W~~~~~~~~---~~~----p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~ 199 (376)
T 3q7m_A 127 WQTKVAGEA---LSR----PVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGR 199 (376)
T ss_dssp EEEECSSCC---CSC----CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTE
T ss_pred EEEeCCCce---EcC----CEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCE
Confidence 333221110 001 11235578888899999999999999988876433221 233444778899999999
Q ss_pred EEEEECCCCceeEEEecCCCCc---------eEEEEEEcCCCCEEEEEECCCcEEEEeCCcceeeeecccceEEEEEecC
Q 008820 404 IRLWSLSDHSLLTVLEEDSSGA---------VSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEG 474 (552)
Q Consensus 404 i~iwd~~~~~~~~~~~~~~~~~---------~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~h~~~v~~v~~~~ 474 (552)
+..+|..+++.+.......... +...... .+..+++++.++.+..+|..+....+.........+..++
T Consensus 200 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 277 (376)
T 3q7m_A 200 VSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVDG 277 (376)
T ss_dssp EEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEEET
T ss_pred EEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceEEC
Confidence 9999999999988776432110 0000011 2567888888999999997543333333334445566678
Q ss_pred CEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEecCCcceeEEEe
Q 008820 475 KWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCNRQIPEIFSLL 547 (552)
Q Consensus 475 ~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~~~~~~~~~~~ 547 (552)
..++.++.++.|..+|..+++......... ...+......++.+++++.+|.|+++|.. ++..+.++.
T Consensus 278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~----~~~~~~~~~~~~~l~v~~~~g~l~~~d~~-tG~~~~~~~ 345 (376)
T 3q7m_A 278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLL----HRLLTSPVLYNGNLVVGDSEGYLHWINVE-DGRFVAQQK 345 (376)
T ss_dssp TEEEEEETTCCEEEEETTTCCEEEEECTTT----TSCCCCCEEETTEEEEECTTSEEEEEETT-TCCEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEeecccC----CCcccCCEEECCEEEEEeCCCeEEEEECC-CCcEEEEEe
Confidence 889999999999999999988766554221 11233334457899999999999999987 455554443
|
| >2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-15 Score=150.08 Aligned_cols=113 Identities=19% Similarity=0.241 Sum_probs=76.3
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+++.+..... .....|||.|||||++ . ...+++++|||||||+||+|++|+ ||
T Consensus 169 ~~kl~DfG~a~~~~~~~~---~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslG~il~~ll~g~~Pf 230 (362)
T 2bdw_A 169 AVKLADFGLAIEVNDSEA---WHGFAGTPGYLSPEVL------K---------KDPYSKPVDIWACGVILYILLVGYPPF 230 (362)
T ss_dssp CEEECCCTTCBCCTTCCS---CCCSCSCTTTCCHHHH------T---------TCCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred CEEEeecCcceEecCCcc---cccCCCCccccCHHHH------c---------cCCCCchhhHHHHHHHHHHHHHCCCCC
Confidence 35666 66666655432 5678999999999999 2 245778999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.......+. ..+.......+...+.....++.+++.+||+.+|.+||++.++.+
T Consensus 231 ~~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 284 (362)
T 2bdw_A 231 WDEDQHRLY-----------------AQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALK 284 (362)
T ss_dssp CCSSHHHHH-----------------HHHHHTCCCCCTTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred CCCCHHHHH-----------------HHHHhCCCCCCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 654332110 001010001111122233456899999999999999999876654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-12 Score=141.23 Aligned_cols=271 Identities=7% Similarity=-0.016 Sum_probs=166.6
Q ss_pred ceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCC-----eEEEEEecCCCCEEEEEcCC---------CcE
Q 008820 254 CVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHK-----VMAVVYVDEDQPLCISGDSG---------GGI 317 (552)
Q Consensus 254 ~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~-----v~~v~~~~~~~~~l~s~~~d---------g~i 317 (552)
...+++|+ +++++++ |++|++||+.++++...+.+|... ..++.|+|++..+ +.++.+ +.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l-~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFI-LLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEE-EEEEEEEECSSSCEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEE-EEEECCeeeEEEccceEE
Confidence 35578898 6777775 999999999999988888887643 2447889987754 555554 567
Q ss_pred EEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEE-ecCCCCCe-----------
Q 008820 318 FVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT-MSGHKSAV----------- 385 (552)
Q Consensus 318 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~-~~~h~~~v----------- 385 (552)
.+||+.+++... + ..+.. .....+++|||+.|+.+. |+.|++||+.+++..+. ..++...+
T Consensus 95 ~~~d~~~~~~~~-l---~~~~~--~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e 167 (740)
T 4a5s_A 95 DIYDLNKRQLIT-E---ERIPN--NTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE 167 (740)
T ss_dssp EEEETTTTEECC-S---SCCCT--TEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred EEEECCCCcEEE-c---ccCCC--cceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence 799999765332 1 11111 123458999999988885 68999999988875542 22333222
Q ss_pred ------EEEEEe-CC-EEEEEeCCC------------------------------------cEEEEECCC---Cc--eeE
Q 008820 386 ------STLAVC-NG-VLYSGSRDG------------------------------------TIRLWSLSD---HS--LLT 416 (552)
Q Consensus 386 ------~~l~~~-~~-~l~s~~~dg------------------------------------~i~iwd~~~---~~--~~~ 416 (552)
.++.|+ ++ .|+.++.|. +|++||+.+ ++ ...
T Consensus 168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~ 247 (740)
T 4a5s_A 168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI 247 (740)
T ss_dssp HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE
T ss_pred hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE
Confidence 348899 44 777765332 488899988 73 222
Q ss_pred EEecC----CCCceEEEEEEcCCCCEEEEEEC----CCcEEEEeCCcc--------eeee--ecccceEE-------EEE
Q 008820 417 VLEED----SSGAVSSVLSLTAVQHTLVVSHE----SGSIKVWRNDKF--------MKSM--QTHKGSVF-------AVF 471 (552)
Q Consensus 417 ~~~~~----~~~~~~~~~~~s~~~~~l~~g~~----dg~i~iwd~~~~--------~~~~--~~h~~~v~-------~v~ 471 (552)
.+... .........+|+|||+.++.... +..|++||.... ...+ ..|...+. .++
T Consensus 248 ~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fs 327 (740)
T 4a5s_A 248 QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFT 327 (740)
T ss_dssp EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEEC
T ss_pred EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEc
Confidence 33221 01223334689999997665533 236899985321 2222 44554433 344
Q ss_pred ecCCEEE-EEeC-C--CeEEEEecCCCeeeeeeccCCCcccCcceEEE-EEeCCeEE-EEeC----CCeEEEEEecCCc
Q 008820 472 LEGKWLF-TGGW-D--KTVSVQELAGDEFEEDVIPTGAIPCGSVITAL-LYWQGKLF-VGCA----DRTVKIALCNRQI 540 (552)
Q Consensus 472 ~~~~~l~-sgs~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l-~~~~~~l~-s~s~----Dg~v~iw~~~~~~ 540 (552)
+||+.++ ..+. + ..|++||+.++........ ...+..+ .++++.++ +++. .+..+||.++..+
T Consensus 328 pDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g------~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g 400 (740)
T 4a5s_A 328 LDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKG------TWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLID 400 (740)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCS------SSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTE
T ss_pred CCCCEEEEEEEcCCCceEEEEEECCCCceEecccC------CEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCC
Confidence 5999877 6664 3 3688889887655433222 2224433 35555544 4443 3556777665433
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-12 Score=128.41 Aligned_cols=292 Identities=7% Similarity=-0.016 Sum_probs=171.8
Q ss_pred EEEEeecCccc-----eEEEEEc--CCEEEEEeCC---CcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcC
Q 008820 244 KFKDLQGHRDC-----VTGLAVG--GGFLFSSSFD---KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDS 313 (552)
Q Consensus 244 ~~~~l~~H~~~-----V~~l~~s--~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~ 313 (552)
.+..+..+... +.+++|+ |++|+.+..+ ..|.+||+.+++......++......+.|+|++. .|+.++.
T Consensus 22 ~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~-~l~~~~~ 100 (396)
T 3c5m_A 22 KVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER-AFFYVKN 100 (396)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS-EEEEEET
T ss_pred ceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC-EEEEEEc
Confidence 34555554333 6778888 8887776543 4688899988876554433333333478999776 5566777
Q ss_pred CCcEEEEeCCCCCCCccccccccCCCceee-e-E---------------EEEeeCCCEEEEe-----eCCCcEEEEECCC
Q 008820 314 GGGIFVWSFSFPLGHEPLKKWNEEKDWRYS-G-I---------------HALTTSGRYLYTG-----SGDRTIKAWSLLD 371 (552)
Q Consensus 314 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~-~---------------~~~~~~~~~l~sg-----s~dg~i~iwd~~~ 371 (552)
++.|++||+.++....... .+..+... . + ..++|+++.++.+ ..+..|++||+.+
T Consensus 101 ~~~l~~~d~~~~~~~~~~~---~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~ 177 (396)
T 3c5m_A 101 ELNLMKVDLETLEEQVIYT---VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIET 177 (396)
T ss_dssp TTEEEEEETTTCCEEEEEE---CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTT
T ss_pred CCcEEEEECCCCCcEEEEe---cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCC
Confidence 7899999998654322111 11111100 0 0 1345566654443 4567899999998
Q ss_pred CceeEEecCCCCCeEEEEEeC--C-EEEEEeCC------CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEE
Q 008820 372 GTLSCTMSGHKSAVSTLAVCN--G-VLYSGSRD------GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS 442 (552)
Q Consensus 372 ~~~~~~~~~h~~~v~~l~~~~--~-~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 442 (552)
++..... .+...+..+.|++ + .|+..+.+ ..|.+||+..++.. .+..+..........|+|+|+.|+.+
T Consensus 178 g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~ 255 (396)
T 3c5m_A 178 GELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYV 255 (396)
T ss_dssp CCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEE
T ss_pred CcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEE
Confidence 8766554 4667789999985 3 56655543 46889998765533 23222112233346899999987776
Q ss_pred ECC-----CcEEEEeCCcc-eeeeecccceEEEEEe-cCCEEEEEe----------------CCCeEEEEecCCCeeeee
Q 008820 443 HES-----GSIKVWRNDKF-MKSMQTHKGSVFAVFL-EGKWLFTGG----------------WDKTVSVQELAGDEFEED 499 (552)
Q Consensus 443 ~~d-----g~i~iwd~~~~-~~~~~~h~~~v~~v~~-~~~~l~sgs----------------~dg~i~iwd~~~~~~~~~ 499 (552)
+.+ +.|++||+... ...+.........+++ +|+++++++ .+..|++||+.+++....
T Consensus 256 ~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l 335 (396)
T 3c5m_A 256 SYFKGQTDRVIYKANPETLENEEVMVMPPCSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKL 335 (396)
T ss_dssp EEETTTCCEEEEEECTTTCCEEEEEECCSEEEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEE
T ss_pred ecCCCCccceEEEEECCCCCeEEeeeCCCCCCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEc
Confidence 543 44999996532 2222211111145566 899888765 347899999988765433
Q ss_pred eccCCCc-----ccCcceEEEEEeC-C-eEEEEe-CCCeEEEEEecCCcc
Q 008820 500 VIPTGAI-----PCGSVITALLYWQ-G-KLFVGC-ADRTVKIALCNRQIP 541 (552)
Q Consensus 500 ~~~~~~~-----~~~~~v~~l~~~~-~-~l~s~s-~Dg~v~iw~~~~~~~ 541 (552)
....... .....+..++|++ + .|+.++ .++...+|.++....
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 336 CKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred cCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 2221100 0000244567774 3 466555 467777777764333
|
| >1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=7.4e-15 Score=140.72 Aligned_cols=126 Identities=10% Similarity=-0.034 Sum_probs=83.4
Q ss_pred hhhcc--cccccccccchh-----hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh
Q 008820 13 VAKVG--CVGSRICDKEVG-----LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI 85 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~-----~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt 85 (552)
.+|+. |+++.+...... .......||+.|||||++ .+ ..+++++|||||||+||||++
T Consensus 149 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~~ 213 (298)
T 1csn_A 149 MIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTH------LG---------REQSRRDDLEALGHVFMYFLR 213 (298)
T ss_dssp CEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHH------TT---------CCCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECccccccccccccccccccCccCCCCCcccCCchhh------cC---------CCCChHHHHHHHHHHHHHHHc
Confidence 36666 556555543221 124677899999999998 32 456789999999999999999
Q ss_pred CC-CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHH
Q 008820 86 GE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (552)
Q Consensus 86 g~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~ 163 (552)
|+ ||......... .............+ .........++.+++.+||+.+|.+||++.++.+.+.
T Consensus 214 g~~pf~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~ 279 (298)
T 1csn_A 214 GSLPWQGLKAATNK--------------QKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFS 279 (298)
T ss_dssp SSCTTSSCCSCCHH--------------HHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHH
T ss_pred CCCCcchhhccccH--------------HHHHHHHhhccCccHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHH
Confidence 99 99763211000 00111111111111 1112234556999999999999999999999999988
Q ss_pred hhhc
Q 008820 164 ELII 167 (552)
Q Consensus 164 ~~~~ 167 (552)
++..
T Consensus 280 ~~~~ 283 (298)
T 1csn_A 280 KVLE 283 (298)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
|
| >3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A | Back alignment and structure |
|---|
Probab=99.51 E-value=5.4e-15 Score=143.25 Aligned_cols=109 Identities=20% Similarity=0.238 Sum_probs=74.6
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+.... ......||+.|||||++ .| ....++++|||||||+||+|++|+ ||.
T Consensus 153 ~kl~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~ell~g~~pf~ 215 (328)
T 3fe3_A 153 IKIADFGFSNEFTVGG---KLDAFCGAPPYAAPELF------QG--------KKYDGPEVDVWSLGVILYTLVSGSLPFD 215 (328)
T ss_dssp EEECSTTCCGGGSSSC---GGGTTSSSGGGCCHHHH------HT--------CCCCSHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred EEEeeccCceecCCCC---ccccccCCcceeCcccc------cC--------CCcCCchhhhhhhHHHHHHHHhCCCCCC
Confidence 4555 5666555443 26778999999999999 22 122247899999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
+.+...+ ...+.............++.+++.+||+.+|.+||++.++.+
T Consensus 216 ~~~~~~~---------------------~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~ 264 (328)
T 3fe3_A 216 GQNLKEL---------------------RERVLRGKYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMK 264 (328)
T ss_dssp CSSHHHH---------------------HHHHHHCCCCCCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred CCCHHHH---------------------HHHHHhCCCCCCCCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 7554421 111111111111123456899999999999999999887655
|
| >4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-15 Score=143.76 Aligned_cols=122 Identities=16% Similarity=0.213 Sum_probs=72.5
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+..... .......||+.|||||++ .+ ..+++++|||||||+||+|+||+ ||.
T Consensus 150 ~kl~Dfg~~~~~~~~~~-~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~~ll~g~~pf~ 213 (294)
T 4eqm_A 150 LKIFDFGIAKALSETSL-TQTNHVLGTVQYFSPEQA------KG---------EATDECTDIYSIGIVLYEMLVGEPPFN 213 (294)
T ss_dssp EEECCCSSSTTC--------------CCSSCCHHHH------HT---------CCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred EEEEeCCCccccccccc-cccCccccCccccCHhHh------cC---------CCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence 4555 55655544322 134567899999999999 22 45678999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCc-chhhHHHHHHhhhc
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRP-LLTNVWKCIRELII 167 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~-~~~~~~~~l~~~~~ 167 (552)
......... .......+..+..........+.+++.+||+.+|.+|| ++.++.+.+..++.
T Consensus 214 ~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~ 275 (294)
T 4eqm_A 214 GETAVSIAI----------------KHIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLH 275 (294)
T ss_dssp SSCHHHHHH----------------HHHSSCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSS
T ss_pred CCChHHHHH----------------HHhhccCCCcchhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHh
Confidence 644331100 00000000011111122344599999999999999999 56778877776653
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.4e-10 Score=105.82 Aligned_cols=282 Identities=11% Similarity=0.033 Sum_probs=180.1
Q ss_pred CeEEEEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEE-eCCCCCeEEEEEecCCCCEEEEEcCCCcE
Q 008820 241 GNVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF-KGHDHKVMAVVYVDEDQPLCISGDSGGGI 317 (552)
Q Consensus 241 ~~~~~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~l~s~~~dg~i 317 (552)
+.+..+.+..+...+.+++++ ++..++...++.|.+||.. ++..... ..+...+.++++.+++. ++++...++.|
T Consensus 3 g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i 80 (299)
T 2z2n_A 3 FKLQELNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGE-VWFTENAANKI 80 (299)
T ss_dssp EEEEEEECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEE
T ss_pred ceEEEEcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCC-EEEeCCCCCeE
Confidence 344556677788899999998 6666665557899999988 5543322 23557789999988654 66666668899
Q ss_pred EEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEE-ecCCCCCeEEEEEe-CCEE
Q 008820 318 FVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT-MSGHKSAVSTLAVC-NGVL 395 (552)
Q Consensus 318 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~-~~~l 395 (552)
..||... . ...+............++.++++.+++...++.|..||. +++.... ...+...+.+++++ ++.+
T Consensus 81 ~~~~~~g-~----~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l 154 (299)
T 2z2n_A 81 GRITKKG-I----IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNAL 154 (299)
T ss_dssp EEECTTS-C----EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCE
T ss_pred EEECCCC-c----EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCE
Confidence 9998752 1 111111101111223356667777777767889999998 5554432 33345678899998 4444
Q ss_pred -EEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcceeee--ecccceEEEEEe
Q 008820 396 -YSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSM--QTHKGSVFAVFL 472 (552)
Q Consensus 396 -~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~--~~h~~~v~~v~~ 472 (552)
++...++.|..||. +++.............. .+++++++++.++...++.|.+||.......+ ..+...+.++.+
T Consensus 155 ~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~ 232 (299)
T 2z2n_A 155 WFTENQNNAIGRITE-SGDITEFKIPTPASGPV-GITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITA 232 (299)
T ss_dssp EEEETTTTEEEEECT-TCCEEEEECSSTTCCEE-EEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEE
T ss_pred EEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcce-eEEECCCCCEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEE
Confidence 44455789999998 66654321211122233 36889999877766668899999974333333 224456777776
Q ss_pred --cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEec
Q 008820 473 --EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCN 537 (552)
Q Consensus 473 --~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~ 537 (552)
+|+.+++...++.|..||.. +......... ....+.++++.++.++.++..+.+..++.+
T Consensus 233 ~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~----~~~~~~~i~~~~g~l~v~~~~~~l~~~~~~ 294 (299)
T 2z2n_A 233 GAGIDLWFTEWGANKIGRLTSN-NIIEEYPIQI----KSAEPHGICFDGETIWFAMECDKIGKLTLI 294 (299)
T ss_dssp CSTTCEEEEETTTTEEEEEETT-TEEEEEECSS----SSCCEEEEEECSSCEEEEETTTEEEEEEEC
T ss_pred CCCCCEEEeccCCceEEEECCC-CceEEEeCCC----CCCccceEEecCCCEEEEecCCcEEEEEcC
Confidence 67766655577899999984 4433221111 134577777755668777767777777765
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-11 Score=134.17 Aligned_cols=307 Identities=11% Similarity=0.020 Sum_probs=181.9
Q ss_pred cceeeecCcceEEEeeCCCeEEEEEe---------ecCccc-----eEEEEEc--CCEEEEEeCC---------CcEEEE
Q 008820 223 DQARAAGGVKDLVNGLSKGNVKFKDL---------QGHRDC-----VTGLAVG--GGFLFSSSFD---------KSIHVW 277 (552)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~H~~~-----V~~l~~s--~~~l~s~s~d---------g~I~iw 277 (552)
..+.++++++.+++. ++.+.+|++ .+|... ...++|| |++|+.++.+ +.+.+|
T Consensus 20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~ 97 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (740)
T ss_dssp CCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred cccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence 356667777666665 777777764 445432 2347788 8999999876 556799
Q ss_pred eCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCce---------------e
Q 008820 278 SLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWR---------------Y 342 (552)
Q Consensus 278 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~---------------~ 342 (552)
|+.+++.. .+..|.+.+...+|+|++..++.+ .|+.|++|++.++....... ....... .
T Consensus 98 d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt~--~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 98 DLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITW--TGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp ETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCS--CCBTTTEEESBCCHHHHHHTSSS
T ss_pred ECCCCcEE-EcccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEcC--CCCccceecCcccccccchhcCC
Confidence 99998854 466778899999999998866444 47899999998765322111 1111100 0
Q ss_pred eeEEEEeeCCCEEEEeeCCC------------------------------------cEEEEECCC---Cc--eeEEec--
Q 008820 343 SGIHALTTSGRYLYTGSGDR------------------------------------TIKAWSLLD---GT--LSCTMS-- 379 (552)
Q Consensus 343 ~~~~~~~~~~~~l~sgs~dg------------------------------------~i~iwd~~~---~~--~~~~~~-- 379 (552)
.....++|||+.|+.++.|. .|++||+.+ ++ ....+.
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~ 252 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP 252 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence 11257999999888875332 488899988 73 223333
Q ss_pred ----CCCCCeEEEEEe-CC-EEEEEeC----CCcEEEEECCCCc----e---eEEEecCCCCceE----EEEEEcCCCCE
Q 008820 380 ----GHKSAVSTLAVC-NG-VLYSGSR----DGTIRLWSLSDHS----L---LTVLEEDSSGAVS----SVLSLTAVQHT 438 (552)
Q Consensus 380 ----~h~~~v~~l~~~-~~-~l~s~~~----dg~i~iwd~~~~~----~---~~~~~~~~~~~~~----~~~~~s~~~~~ 438 (552)
+|...+..++|+ ++ .++.... +..|++||+.+++ + ...+...+.+.+. ....|+|||+.
T Consensus 253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~ 332 (740)
T 4a5s_A 253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS 332 (740)
T ss_dssp HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence 377789999999 55 3444332 3479999999887 2 1111111222111 12579999998
Q ss_pred EE-EEEC-CC--cEEEEeCC-cceeeeecccceEEEE-EecCCEEEEEeCC-----CeEEEE--ecCCCeeeeeeccCCC
Q 008820 439 LV-VSHE-SG--SIKVWRND-KFMKSMQTHKGSVFAV-FLEGKWLFTGGWD-----KTVSVQ--ELAGDEFEEDVIPTGA 505 (552)
Q Consensus 439 l~-~g~~-dg--~i~iwd~~-~~~~~~~~h~~~v~~v-~~~~~~l~sgs~d-----g~i~iw--d~~~~~~~~~~~~~~~ 505 (552)
++ ..+. +| .|++||.. .....+......+..+ .+|++.|+..+.. +...+| ++.++.....+....
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~- 411 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCEL- 411 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTT-
T ss_pred EEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeecccc-
Confidence 77 5553 44 57777854 3334444444455554 3677766655543 334444 554443321222110
Q ss_pred cccCcceEEEEEeCC-e-EE-EEeCC--CeEEEEEec
Q 008820 506 IPCGSVITALLYWQG-K-LF-VGCAD--RTVKIALCN 537 (552)
Q Consensus 506 ~~~~~~v~~l~~~~~-~-l~-s~s~D--g~v~iw~~~ 537 (552)
...........|+++ . ++ +.+.. ..+.+++..
T Consensus 412 ~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~ 448 (740)
T 4a5s_A 412 NPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV 448 (740)
T ss_dssp STTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred CCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence 001345778888853 2 33 33322 356666654
|
| >1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=5.6e-15 Score=143.60 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=69.8
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++....... ....+.|||.|||||++ . ...++.++|+|||||+||||++|+ ||.
T Consensus 144 vkL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslG~il~ell~g~~Pf~ 206 (337)
T 1o6l_A 144 IKITDFGLCKEGISDGA--TMKTFCGTPEYLAPEVL------E---------DNDYGRAVDWWGLGVVMYEMMCGRLPFY 206 (337)
T ss_dssp EEECCCTTCBCSCCTTC--CBCCCEECGGGCCGGGG------S---------SSCBCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred EEEeeccchhhcccCCC--cccccccChhhCChhhh------c---------CCCCCchhhcccchhHHHHHhcCCCCCC
Confidence 4555 56655333222 25678999999999998 2 255778999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcc
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~ 154 (552)
......+ ...+.............++.+++.+||+.+|.+||.
T Consensus 207 ~~~~~~~---------------------~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~g 249 (337)
T 1o6l_A 207 NQDHERL---------------------FELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLG 249 (337)
T ss_dssp CSSHHHH---------------------HHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTT
T ss_pred CCCHHHH---------------------HHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHHhcC
Confidence 6443311 111111011111223456899999999999999993
|
| >3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.6e-15 Score=146.27 Aligned_cols=112 Identities=20% Similarity=0.258 Sum_probs=74.9
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+..... ......||+.|||||++ . ...+++++|||||||+||+|++|+ ||.
T Consensus 172 vkl~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslG~il~~ll~g~~pf~ 234 (351)
T 3c0i_A 172 VKLGGFGVAIQLGESGL--VAGGRVGTPHFMAPEVV------K---------REPYGKPVDVWGCGVILFILLSGCLPFY 234 (351)
T ss_dssp EEECCCTTCEECCTTSC--BCCCCCSCGGGCCHHHH------T---------TCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred EEEecCcceeEecCCCe--eecCCcCCcCccCHHHH------c---------CCCCCchHhhHHHHHHHHHHHHCCCCCC
Confidence 5666 55655554332 35677899999999999 2 245678999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
......+. .+.......+...+.....++.+++.+||+.+|.+||++.++.+
T Consensus 235 ~~~~~~~~------------------~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 235 GTKERLFE------------------GIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp SSHHHHHH------------------HHHHTCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CcHHHHHH------------------HHHcCCCCCCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 63322111 00000000011111223446899999999999999999887655
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-11 Score=122.04 Aligned_cols=257 Identities=10% Similarity=0.052 Sum_probs=166.3
Q ss_pred EEEeecCccceEEEEEc--CCEEEEEe----------CCCcEEEEeCCCCeEEEEEeCC------CCCeEEEEEecCCCC
Q 008820 245 FKDLQGHRDCVTGLAVG--GGFLFSSS----------FDKSIHVWSLKDFSHVHTFKGH------DHKVMAVVYVDEDQP 306 (552)
Q Consensus 245 ~~~l~~H~~~V~~l~~s--~~~l~s~s----------~dg~I~iwd~~~~~~~~~~~~h------~~~v~~v~~~~~~~~ 306 (552)
+..+..+..+ .++|+ ++++++++ .+++|.+||..+++.+.++... ......++++|++..
T Consensus 44 ~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~ 121 (361)
T 2oiz_A 44 LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF 121 (361)
T ss_dssp EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE
T ss_pred EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE
Confidence 4556666666 88999 88888886 3678999999999998888643 245678899998876
Q ss_pred EEEEEcC-CCcEEEEeCCCCCCCcc-ccccccCCCceeeeEEEEeeCC-CEEEEeeCCCcEEEEECCC-CceeEE-----
Q 008820 307 LCISGDS-GGGIFVWSFSFPLGHEP-LKKWNEEKDWRYSGIHALTTSG-RYLYTGSGDRTIKAWSLLD-GTLSCT----- 377 (552)
Q Consensus 307 ~l~s~~~-dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~l~sgs~dg~i~iwd~~~-~~~~~~----- 377 (552)
++++... +++|.+||+.+.+.... +.. .. . .. ..+.|++ ..+++.+.||.+.+|+... ++....
T Consensus 122 l~v~n~~~~~~v~v~d~~~~~~~~~~i~~---~~--~-~~-v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~ 194 (361)
T 2oiz_A 122 IVLQNASPATSIGIVDVAKGDYVEDVTAA---AG--C-WS-VIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQ 194 (361)
T ss_dssp EEEEEESSSEEEEEEETTTTEEEEEEGGG---TT--E-EE-EEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCC
T ss_pred EEEECCCCCCeEEEEECCCCcEEEEEecC---CC--c-ce-eEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccc
Confidence 6555444 78999999987643322 211 11 0 01 2345554 5788889999999999865 554422
Q ss_pred -ecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCce--eEEEecCC-----CCceE---EEEEEcCCCCEEEEEEC
Q 008820 378 -MSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSL--LTVLEEDS-----SGAVS---SVLSLTAVQHTLVVSHE 444 (552)
Q Consensus 378 -~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~-----~~~~~---~~~~~s~~~~~l~~g~~ 444 (552)
+..+..++ .+.+. +..++..+.++.+.++|+..... ...+.... .+... ..++++++++.++++..
T Consensus 195 ~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~ 273 (361)
T 2oiz_A 195 MFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMH 273 (361)
T ss_dssp CSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEE
T ss_pred eEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEc
Confidence 22222222 11122 34666677899999999976542 22222110 00000 01578999888887654
Q ss_pred -----------CCcEEEEeCC--cceeeeecccceEEEEE--ecCCEEEEEeCCCeEEEEecCCC--eeeeeeccCCCcc
Q 008820 445 -----------SGSIKVWRND--KFMKSMQTHKGSVFAVF--LEGKWLFTGGWDKTVSVQELAGD--EFEEDVIPTGAIP 507 (552)
Q Consensus 445 -----------dg~i~iwd~~--~~~~~~~~h~~~v~~v~--~~~~~l~sgs~dg~i~iwd~~~~--~~~~~~~~~~~~~ 507 (552)
.+.|.+||.. +.+..+..+. +.++. ++|++|++++. +.|.+||..++ +....+...
T Consensus 274 ~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~---- 346 (361)
T 2oiz_A 274 PDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGA---- 346 (361)
T ss_dssp SSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTS----
T ss_pred cCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccC----
Confidence 3479999964 4566677666 55554 59999998887 99999999998 766554332
Q ss_pred cCcceEEEEEeC
Q 008820 508 CGSVITALLYWQ 519 (552)
Q Consensus 508 ~~~~v~~l~~~~ 519 (552)
......++++|
T Consensus 347 -G~~P~~~~~~p 357 (361)
T 2oiz_A 347 -AEASLQVQFHP 357 (361)
T ss_dssp -CSSEEEEEECC
T ss_pred -CCCcEEEEecC
Confidence 22345566664
|
| >3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.7e-15 Score=142.67 Aligned_cols=116 Identities=17% Similarity=0.144 Sum_probs=71.4
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
+|+. |+++....... ......||+.|||||++ .+ ...++++|||||||+||||+||+ ||.
T Consensus 178 ~kL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~elltg~~Pf~ 240 (309)
T 3p86_A 178 VKVCDFGLSRLKASTFL--SSKSAAGTPEWMAPEVL------RD---------EPSNEKSDVYSFGVILWELATLQQPWG 240 (309)
T ss_dssp EEECCCC-------------------CCTTSCHHHH------TT---------CCCCTTHHHHHHHHHHHHHHHCCCTTT
T ss_pred EEECCCCCCcccccccc--ccccCCCCccccChhhh------cC---------CCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence 4555 44544333322 24567899999999999 32 45678999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH--HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhhc
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL--LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~~ 167 (552)
......+. ..+... ..........++.+++.+||+.+|.+||++.++.+.+..++.
T Consensus 241 ~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~ 298 (309)
T 3p86_A 241 NLNPAQVV---------------------AAVGFKCKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIK 298 (309)
T ss_dssp TSCHHHHH---------------------HHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC
T ss_pred CCCHHHHH---------------------HHHHhcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 64433110 000000 001111234458999999999999999999999999888763
|
| >2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-15 Score=147.45 Aligned_cols=113 Identities=18% Similarity=0.234 Sum_probs=74.8
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+++.+..... ......||+.|||||++.. ..+++++|||||||+||||++|+ ||
T Consensus 158 ~~kl~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~---------------~~~~~~~DiwslG~il~ell~g~~Pf 220 (342)
T 2qr7_A 158 SIRICDFGFAKQLRAENG--LLMTPCYTANFVAPEVLER---------------QGYDAACDIWSLGVLLYTMLTGYTPF 220 (342)
T ss_dssp GEEECCCTTCEECBCTTC--CBCCSSCCSSCCCHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred eEEEEECCCcccCcCCCC--ceeccCCCccccCHHHhcC---------------CCCCCccCeeeHhHHHHHHhcCCCCC
Confidence 35666 66666554432 2567789999999999932 33568999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHH----HHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVT----YLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
....... ...+...+. ..+...+.....++.+++.+||..+|.+||++.++.+
T Consensus 221 ~~~~~~~------------------~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~ 277 (342)
T 2qr7_A 221 ANGPDDT------------------PEEILARIGSGKFSLSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLR 277 (342)
T ss_dssp CSSTTSC------------------HHHHHHHHHHCCCCCCSTTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred CCCCcCC------------------HHHHHHHHccCCcccCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 6521110 001111111 0011112234456999999999999999999877654
|
| >1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-15 Score=145.55 Aligned_cols=113 Identities=16% Similarity=0.174 Sum_probs=76.5
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+++.+..... .....|||.|||||++ .+ ..+++++|||||||+||+|++|+ ||
T Consensus 142 ~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~~ll~g~~pf 203 (321)
T 1tki_A 142 TIKIIEFGQARQLKPGDN---FRLLFTAPEYYAPEVH------QH---------DVVSTATDMWSLGTLVYVLLSGINPF 203 (321)
T ss_dssp CEEECCCTTCEECCTTCE---EEEEESCGGGSCHHHH------TT---------CEECHHHHHHHHHHHHHHHHHSSCTT
T ss_pred CEEEEECCCCeECCCCCc---cccccCChhhcCcHHh------cC---------CCCCchhhHHHHHHHHHHHHhCCCCC
Confidence 44555 56666654432 4667899999999999 32 45678999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
...+...+. ..+.......+.........++.+++.+||..+|.+||++.++.+
T Consensus 204 ~~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~ 257 (321)
T 1tki_A 204 LAETNQQII-----------------ENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp CCSSHHHHH-----------------HHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred cCCCHHHHH-----------------HHHHcCCCCCChhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 664433111 000000000111112233456899999999999999999988766
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.49 E-value=9.7e-12 Score=132.98 Aligned_cols=246 Identities=11% Similarity=0.046 Sum_probs=156.7
Q ss_pred eecCccceE---------EEEEc----CCE-EEEEeC-CCcEEEEeCC--CCeEEEEEeC-----CCCCeEEEEEecCCC
Q 008820 248 LQGHRDCVT---------GLAVG----GGF-LFSSSF-DKSIHVWSLK--DFSHVHTFKG-----HDHKVMAVVYVDEDQ 305 (552)
Q Consensus 248 l~~H~~~V~---------~l~~s----~~~-l~s~s~-dg~I~iwd~~--~~~~~~~~~~-----h~~~v~~v~~~~~~~ 305 (552)
+..|...+. ...|+ |+. |+.++. +..|.+|++. .......+.. |...+.+++|+|+++
T Consensus 63 l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~ 142 (662)
T 3azo_A 63 ALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERG 142 (662)
T ss_dssp SSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTT
T ss_pred eCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCC
Confidence 455665555 55454 776 665543 5667777765 2033445555 677889999999887
Q ss_pred CEEEEEcCC----------CcEEEEeCCCCCCC--ccccccc-cCCCceeeeEEEEeeCCCEEEEeeCC--------CcE
Q 008820 306 PLCISGDSG----------GGIFVWSFSFPLGH--EPLKKWN-EEKDWRYSGIHALTTSGRYLYTGSGD--------RTI 364 (552)
Q Consensus 306 ~~l~s~~~d----------g~i~vwd~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~l~sgs~d--------g~i 364 (552)
.+ ++++.| ..|++||+.+.... .....+. .... .....+++|||++|+.++.+ ..|
T Consensus 143 ~l-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i 219 (662)
T 3azo_A 143 EV-WCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHR--FVTGPRLSPDGRQAVWLAWDHPRMPWEGTEL 219 (662)
T ss_dssp EE-EEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSS--EECCCEECTTSSEEEEEEECTTCCTTTCEEE
T ss_pred EE-EEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCC--cccCceECCCCCEEEEEECCCCCCCCCCcEE
Confidence 55 555554 58999999862000 0111111 1111 11224789999999887755 379
Q ss_pred EEEECC-CC---ceeEEecCCCCCeEEEEEe-CC-EEEEEeCCC--cEEEEECCCCceeEEEecCCCCc--------eEE
Q 008820 365 KAWSLL-DG---TLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDG--TIRLWSLSDHSLLTVLEEDSSGA--------VSS 428 (552)
Q Consensus 365 ~iwd~~-~~---~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~--------~~~ 428 (552)
++||+. ++ +......+|...+..+.|+ ++ ++++++.++ .|.+||+.+++.......+ ... ...
T Consensus 220 ~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~-~~~~~p~w~~~~~~ 298 (662)
T 3azo_A 220 KTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRRE-EEFAGPLWTPGMRW 298 (662)
T ss_dssp EEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCS-SBSSCCCCSTTCCS
T ss_pred EEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccc-ccccCccccccCce
Confidence 999998 57 4444445567889999999 44 777777788 6667776666654333221 111 122
Q ss_pred EEEEcCCCCEEEEEECCCcEEEE--eCC-cceeeeecccceEEEE-EecCCEEE--EEeCCC--eEEEEecCCCeeeee
Q 008820 429 VLSLTAVQHTLVVSHESGSIKVW--RND-KFMKSMQTHKGSVFAV-FLEGKWLF--TGGWDK--TVSVQELAGDEFEED 499 (552)
Q Consensus 429 ~~~~s~~~~~l~~g~~dg~i~iw--d~~-~~~~~~~~h~~~v~~v-~~~~~~l~--sgs~dg--~i~iwd~~~~~~~~~ 499 (552)
++++++++++++++. +.+++| |.. .....+..|...+..+ +++++.++ +++.+. .|.+||+.+++....
T Consensus 299 -~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 299 -FAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp -EEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred -EeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 578899999999998 999999 543 4467777888888888 88666433 445454 456667767655443
|
| >2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.1e-15 Score=144.79 Aligned_cols=108 Identities=15% Similarity=0.122 Sum_probs=73.8
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++....... ....+.||+.|||||++ . ...++.++|+|||||+||||++|+ ||.
T Consensus 178 ikL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslG~il~ell~G~~Pf~ 240 (373)
T 2r5t_A 178 IVLTDFGLCKENIEHNS--TTSTFCGTPEYLAPEVL------H---------KQPYDRTVDWWCLGAVLYEMLYGLPPFY 240 (373)
T ss_dssp EEECCCCBCGGGBCCCC--CCCSBSCCCCCCCHHHH------T---------TCCCCTHHHHHHHHHHHHHHHHSSCTTC
T ss_pred EEEeeCccccccccCCC--ccccccCCccccCHHHh------C---------CCCCCchhhhHHHHHHHHHHHcCCCCCC
Confidence 4555 56655333222 26788999999999999 2 245678999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVW 159 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~ 159 (552)
..+...+ ...+...+.........++.+++.+||+.+|.+||+..+..
T Consensus 241 ~~~~~~~---------------------~~~i~~~~~~~~~~~~~~~~~li~~lL~~dp~~R~~~~~~~ 288 (373)
T 2r5t_A 241 SRNTAEM---------------------YDNILNKPLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDF 288 (373)
T ss_dssp CSBHHHH---------------------HHHHHHSCCCCCSSSCHHHHHHHHHHTCSSGGGSTTTTTTH
T ss_pred CCCHHHH---------------------HHHHHhcccCCCCCCCHHHHHHHHHHcccCHHhCCCCCCCH
Confidence 6443311 11111111111223345689999999999999999986433
|
| >2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-14 Score=141.55 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=81.2
Q ss_pred hhhcc--cccccccccchh-----hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh
Q 008820 13 VAKVG--CVGSRICDKEVG-----LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI 85 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~-----~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt 85 (552)
..|+. |+++.+...... .......||+.|||||++ .+ ..++.++|||||||+||||+|
T Consensus 191 ~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~il~ell~ 255 (345)
T 2v62_A 191 QVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAH------KG---------VALSRRSDVEILGYCMLRWLC 255 (345)
T ss_dssp SEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHH------HT---------CCCCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEeCCCceecccccccccchhccccccCCCccccCHHHh------cC---------CCCCchhhHHHHHHHHHHHHh
Confidence 45666 566665443211 113667899999999999 22 456789999999999999999
Q ss_pred CC-CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhc--CccccHHHHHHhhcccCCCCCcchhhHHHHH
Q 008820 86 GE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFG--SEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (552)
Q Consensus 86 g~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l 162 (552)
|+ ||......... ............+........ ....++.+++.+||+.+|.+||++.++.+.+
T Consensus 256 g~~pf~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L 323 (345)
T 2v62_A 256 GKLPWEQNLKDPVA------------VQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKIL 323 (345)
T ss_dssp SSCTTGGGTTCHHH------------HHHHHHHHHHTTTHHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHH
T ss_pred CCCCccccccccHH------------HHHHHHhhcccccHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHHHHHHHH
Confidence 99 99653221000 000011111111111111111 3455699999999999999999999999988
Q ss_pred Hhh
Q 008820 163 REL 165 (552)
Q Consensus 163 ~~~ 165 (552)
..+
T Consensus 324 ~~~ 326 (345)
T 2v62_A 324 NPH 326 (345)
T ss_dssp CTT
T ss_pred hcc
Confidence 764
|
| >3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.5e-15 Score=145.22 Aligned_cols=104 Identities=18% Similarity=0.174 Sum_probs=66.2
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+|+....... ....++|||.|||||++.+ ..++.++|||||||+||||++|+ ||.
T Consensus 163 ikL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~---------------~~~~~~~DiwslG~il~ell~G~~Pf~ 225 (353)
T 3txo_A 163 CKLADFGMCKEGICNGV--TTATFCGTPDYIAPEILQE---------------MLYGPAVDWWAMGVLLYEMLCGHAPFE 225 (353)
T ss_dssp EEECCCTTCBCSCC-----------CCGGGCCHHHHHH---------------HHCTTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred EEEccccceeecccCCc--cccccCCCcCeEChhhcCC---------------CCcCCccCCCcchHHHHHHHhCCCCCC
Confidence 4555 56654333322 2677899999999999932 34568999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcch
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~ 155 (552)
..+...+ ...+..............+.+++.+||+++|.+||+.
T Consensus 226 ~~~~~~~---------------------~~~i~~~~~~~p~~~~~~~~~li~~lL~~dP~~R~~~ 269 (353)
T 3txo_A 226 AENEDDL---------------------FEAILNDEVVYPTWLHEDATGILKSFMTKNPTMRLGS 269 (353)
T ss_dssp CSSHHHH---------------------HHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTS
T ss_pred CCCHHHH---------------------HHHHHcCCCCCCCCCCHHHHHHHHHHhhhCHHHccCC
Confidence 6543311 1111111111112234458999999999999999997
|
| >3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.4e-15 Score=142.28 Aligned_cols=137 Identities=14% Similarity=0.066 Sum_probs=81.6
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.+|+. |+++.+.............||+.|||||++ .+. ......++.++|||||||+||||+||+ ||
T Consensus 169 ~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~~----~~~~~~~~~~~DiwslG~il~el~tg~~pf 238 (322)
T 3soc_A 169 TACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVL------EGA----INFQRDAFLRIDMYAMGLVLWELASRCTAA 238 (322)
T ss_dssp CEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHH------TTC----CCCCHHHHHHHHHHHHHHHHHHHHTTBTTS
T ss_pred eEEEccCCcccccccccCccccccCccCccccCHhhc------ccc----cccCcCCCccchhHHHHHHHHHHHhCCCCC
Confidence 45666 666666554433335567899999999999 220 001135567899999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhh--hhhHHHHHHHHHHH-hhhh----c--CccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACL--GMYMAWMEKVTYLL-ENKF----G--SEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~----~--~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+....... +...... .....+........ .+.. . ....++.+++.+||+.+|.+||++.++.+
T Consensus 239 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~ 311 (322)
T 3soc_A 239 DGPVDEYML-------PFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGE 311 (322)
T ss_dssp SSCCCCCCC-------TTHHHHCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred CCCcchhcc-------chhhhhccCCchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHH
Confidence 764322100 0000000 00111111110000 0000 0 01123889999999999999999999999
Q ss_pred HHHhhh
Q 008820 161 CIRELI 166 (552)
Q Consensus 161 ~l~~~~ 166 (552)
.+.++.
T Consensus 312 ~L~~l~ 317 (322)
T 3soc_A 312 RITQMQ 317 (322)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.8e-11 Score=114.59 Aligned_cols=239 Identities=14% Similarity=0.082 Sum_probs=160.1
Q ss_pred EEeecCccceEEEEEc--CC-EEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q 008820 246 KDLQGHRDCVTGLAVG--GG-FLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (552)
Q Consensus 246 ~~l~~H~~~V~~l~~s--~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 322 (552)
..+..+.....+++|+ ++ +++++..++.|..||..++ ...+..+...+.++++.+++. ++++...++.|.+||.
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLERQRE 97 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEEEECS
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCc-EEEEecCCCeEEEEcC
Confidence 3344566678899998 66 7888888999999999887 667777888899999999765 6677777789999998
Q ss_pred CCCCCCccccccccCCCceeeeEEEEeeCCCEEEE----ee-------------CCCcEEEEECCCCceeEEecCCCCCe
Q 008820 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYT----GS-------------GDRTIKAWSLLDGTLSCTMSGHKSAV 385 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s----gs-------------~dg~i~iwd~~~~~~~~~~~~h~~~v 385 (552)
.++............. .....-.+++++|+++++ |+ ..+.|..+|.. ++. ..+..+....
T Consensus 98 ~~g~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~ 174 (296)
T 3e5z_A 98 PGGEWESIADSFEGKK-LNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKP 174 (296)
T ss_dssp TTCCEEEEECEETTEE-CCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSE
T ss_pred CCCcEEEEeeccCCCC-CCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCC
Confidence 7654322111111100 001112467888887777 33 13456666654 443 3445566678
Q ss_pred EEEEEe-CC-EEEEEeCCCcEEEEECC-CCce---eEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC-ccee
Q 008820 386 STLAVC-NG-VLYSGSRDGTIRLWSLS-DHSL---LTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND-KFMK 458 (552)
Q Consensus 386 ~~l~~~-~~-~l~s~~~dg~i~iwd~~-~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~-~~~~ 458 (552)
..++|+ ++ .+++.+.++.|.+||+. +++. ...+ ....+.... ++++++|++.++. ++.|.+||.. +.+.
T Consensus 175 ~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~-i~~d~~G~l~v~~--~~~v~~~~~~g~~~~ 250 (296)
T 3e5z_A 175 NGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDG-LRVDAGGLIWASA--GDGVHVLTPDGDELG 250 (296)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCS-EEEBTTSCEEEEE--TTEEEEECTTSCEEE
T ss_pred ccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCe-EEECCCCCEEEEc--CCeEEEECCCCCEEE
Confidence 899998 33 66777788999999997 5554 3333 222222333 6899999866665 7899999964 4556
Q ss_pred eeecccceEEEEEe---cCCEEEEEeCCCeEEEEecCCCee
Q 008820 459 SMQTHKGSVFAVFL---EGKWLFTGGWDKTVSVQELAGDEF 496 (552)
Q Consensus 459 ~~~~h~~~v~~v~~---~~~~l~sgs~dg~i~iwd~~~~~~ 496 (552)
.+..+.. +.++.+ +++.|++++.+ .+..++..+.++
T Consensus 251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 251 RVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp EEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred EEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 6666666 667666 66788888876 455556666544
|
| >3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-14 Score=140.95 Aligned_cols=129 Identities=14% Similarity=0.112 Sum_probs=84.1
Q ss_pred hhhcc--cccccccccchh-----hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh
Q 008820 13 VAKVG--CVGSRICDKEVG-----LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI 85 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~-----~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt 85 (552)
.+|+. |+++.+...... .....+.||+.|||||++ .| ..++.++|||||||+||||+|
T Consensus 192 ~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~el~~ 256 (364)
T 3op5_A 192 QVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAH------NG---------VAPSRRGDLEILGYCMIQWLT 256 (364)
T ss_dssp CEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHH------TT---------CCCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHh------CC---------CCCCchhhHHHHHHHHHHHHh
Confidence 35555 667666544321 112456699999999999 33 457889999999999999999
Q ss_pred CC-CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhh--cCccccHHHHHHhhcccCCCCCcchhhHHHHH
Q 008820 86 GE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF--GSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCI 162 (552)
Q Consensus 86 g~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l 162 (552)
|+ ||......... .................... ...+.++.+++.+|++.+|.+||++.++.+.+
T Consensus 257 g~~Pf~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l 324 (364)
T 3op5_A 257 GHLPWEDNLKDPKY------------VRDSKIRYRENIASLMDKCFPAANAPGEIAKYMETVKLLDYTEKPLYENLRDIL 324 (364)
T ss_dssp SCCTTGGGTTCHHH------------HHHHHHHHHHCHHHHHHHHSCTTCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHH
T ss_pred CCCCccccccCHHH------------HHHHHHHhhhhHHHHHHHhcccccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Confidence 99 99863322000 00000111111222221111 23355699999999999999999999999998
Q ss_pred HhhhcC
Q 008820 163 RELIIK 168 (552)
Q Consensus 163 ~~~~~~ 168 (552)
..++..
T Consensus 325 ~~~~~~ 330 (364)
T 3op5_A 325 LQGLKA 330 (364)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887643
|
| >2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-14 Score=142.38 Aligned_cols=104 Identities=17% Similarity=0.165 Sum_probs=70.9
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++....... ....+.|||.|||||++ . ...++.++|+|||||+||||++|+ ||.
T Consensus 160 vkL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslG~il~ell~G~~Pf~ 222 (353)
T 2i0e_A 160 IKIADFGMCKENIWDGV--TTKTFCGTPDYIAPEII------A---------YQPYGKSVDWWAFGVLLYEMLAGQAPFE 222 (353)
T ss_dssp EEECCCTTCBCCCCTTC--CBCCCCSCGGGCCHHHH------T---------TCCBSTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred EEEEeCCcccccccCCc--ccccccCCccccChhhh------c---------CCCcCCcccccchHHHHHHHHcCCCCCC
Confidence 4555 55654332222 25678999999999999 2 245678999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcch
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~ 155 (552)
..+...+ ...+.............++.+++.+||+.+|.+||+.
T Consensus 223 ~~~~~~~---------------------~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 266 (353)
T 2i0e_A 223 GEDEDEL---------------------FQSIMEHNVAYPKSMSKEAVAICKGLMTKHPGKRLGC 266 (353)
T ss_dssp CSSHHHH---------------------HHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTSCTTC
T ss_pred CCCHHHH---------------------HHHHHhCCCCCCCCCCHHHHHHHHHHhhcCHHHcCCC
Confidence 6443311 1111111111112234568999999999999999975
|
| >2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.5e-15 Score=145.98 Aligned_cols=126 Identities=17% Similarity=0.245 Sum_probs=72.4
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p 88 (552)
...|+. |+++.+.............||+.|||||++....... ........+++++|||||||+||||++|+ |
T Consensus 191 ~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~----~~~~~~~~~~~~~DiwSlGvil~ell~G~~P 266 (390)
T 2zmd_A 191 GMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSR----ENGKSKSKISPKSDVWSLGCILYYMTYGKTP 266 (390)
T ss_dssp SCEEECCCSSSCCC---------CCSCCCGGGCCHHHHHCC----------------CCHHHHHHHHHHHHHHHHHSSCT
T ss_pred CeEEEEecCccccccCCCccccCCCCCcCCCccChHHhhhccccc----cccccccCCCChhhHHHHHHHHHHHHHCCCc
Confidence 346777 6777776554433456788999999999993210000 00001235778999999999999999999 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH--HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL--LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
|...... + ... ..+... ...........+.+++.+||+.+|.+||++.++.+.
T Consensus 267 f~~~~~~-~------------------~~~-~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h 321 (390)
T 2zmd_A 267 FQQIINQ-I------------------SKL-HAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 321 (390)
T ss_dssp TTTCCCH-H------------------HHH-HHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred chhhhHH-H------------------HHH-HHHhCccccCCCCccchHHHHHHHHHHcccChhhCCCHHHHhhC
Confidence 9652111 0 000 000000 000111123358899999999999999998877653
|
| >3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.2e-15 Score=144.83 Aligned_cols=119 Identities=16% Similarity=0.240 Sum_probs=81.4
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
.+|++ |+++.+.........+...||+.|||||++. ...++.++|||||||+||||+| |+ |
T Consensus 231 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~---------------~~~~~~~~Di~slG~il~ellt~g~~p 295 (359)
T 3vhe_A 231 VVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIF---------------DRVYTIQSDVWSFGVLLWEIFSLGASP 295 (359)
T ss_dssp CEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHH---------------HCCCCHHHHHHHHHHHHHHHTTTSCCS
T ss_pred cEEEEeccceeeecccccchhccccCCCceeEChhhhc---------------CCCCCchhhhhhHHHHHHHHHhcCCCC
Confidence 45666 5666665444333467788999999999992 2456789999999999999999 99 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|........ ........ ..........++.+++.+||+.+|.+||++.++.+.+..++
T Consensus 296 ~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~ 354 (359)
T 3vhe_A 296 YPGVKIDEE--------------------FCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 354 (359)
T ss_dssp STTCCCSHH--------------------HHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCccchhHH--------------------HHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHH
Confidence 976432200 00000000 01111223446999999999999999999999999988875
|
| >3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.9e-15 Score=146.21 Aligned_cols=121 Identities=17% Similarity=0.148 Sum_probs=82.6
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~- 87 (552)
..+|++ |+++.+.............||+.|||||++. ...+++++|||||||+||||+| |+
T Consensus 221 ~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~---------------~~~~~~~~DvwslG~il~ellt~g~~ 285 (367)
T 3l9p_A 221 RVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFM---------------EGIFTSKTDTWSFGVLLWEIFSLGYM 285 (367)
T ss_dssp CCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred ceEEECCCccccccccccccccCCCcCCcccEECHHHhc---------------CCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence 356666 5565554443333355678999999999992 2456789999999999999998 99
Q ss_pred CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
||.......+. ..+.... ..........+.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 286 pf~~~~~~~~~---------------------~~i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~ 344 (367)
T 3l9p_A 286 PYPSKSNQEVL---------------------EFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCT 344 (367)
T ss_dssp SSTTCCHHHHH---------------------HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHH---------------------HHHHcCCCCCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHh
Confidence 99764433111 1000000 0011123345889999999999999999999999888765
Q ss_pred cC
Q 008820 167 IK 168 (552)
Q Consensus 167 ~~ 168 (552)
..
T Consensus 345 ~~ 346 (367)
T 3l9p_A 345 QD 346 (367)
T ss_dssp HC
T ss_pred hC
Confidence 43
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-11 Score=117.22 Aligned_cols=252 Identities=9% Similarity=-0.031 Sum_probs=169.8
Q ss_pred CCCcEEEEeCCCCeEEEEEe------CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceee
Q 008820 270 FDKSIHVWSLKDFSHVHTFK------GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYS 343 (552)
Q Consensus 270 ~dg~I~iwd~~~~~~~~~~~------~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 343 (552)
.+++|.++|.++++....+. ........+.+. ++.++++...++.|.+||..+.+....+.. .. ..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~---~~--~p- 86 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITG---FT--SP- 86 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEEC---CS--SE-
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCC---CC--CC-
Confidence 38899999999998765541 122346777764 455777778889999999987765444421 11 11
Q ss_pred eEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCC-----CCeEEEEEeCCEEEEEe--CCCcEEEEECCCCceeE
Q 008820 344 GIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHK-----SAVSTLAVCNGVLYSGS--RDGTIRLWSLSDHSLLT 416 (552)
Q Consensus 344 ~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~l~~~~~~l~s~~--~dg~i~iwd~~~~~~~~ 416 (552)
.-.+++++++.+++...++.|.+||..+++....+.... .....+++.++.++.+. .++.|.++|+.+++.+.
T Consensus 87 ~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~ 166 (328)
T 3dsm_A 87 RYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVD 166 (328)
T ss_dssp EEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEE
T ss_pred cEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEE
Confidence 223566777544444488999999999999887775333 14567777777666665 48999999999999888
Q ss_pred EEecCCCCceEEEEEEcCCCCEEEEEECC----------CcEEEEeCCc--ceeeeecc-cceEEEEEe--cCCEEEEEe
Q 008820 417 VLEEDSSGAVSSVLSLTAVQHTLVVSHES----------GSIKVWRNDK--FMKSMQTH-KGSVFAVFL--EGKWLFTGG 481 (552)
Q Consensus 417 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~d----------g~i~iwd~~~--~~~~~~~h-~~~v~~v~~--~~~~l~sgs 481 (552)
.+..... ... +.++++|++++++..+ +.|.++|..+ ....+... ......+.+ ++++|+++.
T Consensus 167 ~i~~g~~--p~~-i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 167 ELTIGIQ--PTS-LVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp EEECSSC--BCC-CEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES
T ss_pred EEEcCCC--ccc-eEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc
Confidence 8765321 222 6889999877776554 7899999653 33344322 123455555 688888876
Q ss_pred CCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEE-----eCCCeEEEEEec
Q 008820 482 WDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVG-----CADRTVKIALCN 537 (552)
Q Consensus 482 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~-----s~Dg~v~iw~~~ 537 (552)
. .|.+||..+++......... .......++++| +.++++ ..++.|.+|+.+
T Consensus 244 ~--~v~~~d~~t~~~~~~~~~~~---~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 244 N--DIWRMPVEADRVPVRPFLEF---RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp S--SEEEEETTCSSCCSSCSBCC---CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred c--EEEEEECCCCceeeeeeecC---CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 5 89999998876532111110 134578899985 456555 468899999987
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.7e-12 Score=125.21 Aligned_cols=265 Identities=12% Similarity=0.028 Sum_probs=163.7
Q ss_pred EEEeCCCCeEEEEEeCCCCCeEE-----EEEecCCCCEEEEEcCCCc--EEEEeCCCCCCCccccccccCCCceeeeEEE
Q 008820 275 HVWSLKDFSHVHTFKGHDHKVMA-----VVYVDEDQPLCISGDSGGG--IFVWSFSFPLGHEPLKKWNEEKDWRYSGIHA 347 (552)
Q Consensus 275 ~iwd~~~~~~~~~~~~h~~~v~~-----v~~~~~~~~~l~s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (552)
..+|..++..+..+..|...... .+|+|++..+++++..++. |.+||+.++........ +.. . .....
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~---~~~-~-~~~~~ 87 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG---RGD-N-TFGGF 87 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS---SCB-C-SSSCE
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC---CCC-C-ccceE
Confidence 34577888888888888776666 8899988866666655774 77788876543322211 110 0 00136
Q ss_pred EeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEE--e-CC-EEEEE----------------------eCC
Q 008820 348 LTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAV--C-NG-VLYSG----------------------SRD 401 (552)
Q Consensus 348 ~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~-~~-~l~s~----------------------~~d 401 (552)
++|+++.|+.++.++.|++||+.+++....+..+...+....+ + ++ .++.. ..+
T Consensus 88 ~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (388)
T 3pe7_A 88 LSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPC 167 (388)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCC
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCc
Confidence 9999999999999999999999999887777766666655554 4 34 44422 245
Q ss_pred CcEEEEECCCCceeEEEecCCCCceEEEEEEcC-CCCEEEEEECC------CcEEEEeCC-cceeeeeccc--ceEEEEE
Q 008820 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA-VQHTLVVSHES------GSIKVWRND-KFMKSMQTHK--GSVFAVF 471 (552)
Q Consensus 402 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~d------g~i~iwd~~-~~~~~~~~h~--~~v~~v~ 471 (552)
..|.+||+.+++........ ..... ..|+| +|+.|+....+ ..|.++|.. .....+..+. ..+....
T Consensus 168 ~~l~~~d~~~g~~~~l~~~~--~~~~~-~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 244 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQEN--QWLGH-PIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEF 244 (388)
T ss_dssp EEEEEEETTTCCEEEEEEES--SCEEE-EEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEE
T ss_pred ceEEEEECCCCceEEeecCC--ccccc-cEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccce
Confidence 78999999998765544432 23333 68999 99988877753 378888854 3344444444 2455555
Q ss_pred e--cCCEEEEEeC-CC----eEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEE---------eCCCeEEE
Q 008820 472 L--EGKWLFTGGW-DK----TVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVG---------CADRTVKI 533 (552)
Q Consensus 472 ~--~~~~l~sgs~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~---------s~Dg~v~i 533 (552)
| ||+.|+..+. ++ .|++||+.+++.....................|+| ..|+.. ..+..|++
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~ 324 (388)
T 3pe7_A 245 WVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYV 324 (388)
T ss_dssp ECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEE
T ss_pred ECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEE
Confidence 4 8987765443 22 39999999876543322211000000011124553 234432 55678999
Q ss_pred EEecCCcceeEEEecc
Q 008820 534 ALCNRQIPEIFSLLLH 549 (552)
Q Consensus 534 w~~~~~~~~~~~~~gh 549 (552)
|++.. ..+..+..|
T Consensus 325 ~d~~~--~~~~~l~~~ 338 (388)
T 3pe7_A 325 FNMKN--GTQHRVARH 338 (388)
T ss_dssp EETTT--TEEEEEEEC
T ss_pred EeccC--CceEEeccc
Confidence 99874 234445444
|
| >2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.7e-15 Score=146.01 Aligned_cols=116 Identities=17% Similarity=0.259 Sum_probs=66.4
Q ss_pred hhhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-
Q 008820 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (552)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~- 87 (552)
....|+. |+++.+.... ......||+.|||||++ .+ ..+++++|||||||+||||++|+
T Consensus 187 ~~~~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~ell~g~~ 248 (349)
T 2w4o_A 187 DAPLKIADFGLSKIVEHQV---LMKTVCGTPGYCAPEIL------RG---------CAYGPEVDMWSVGIITYILLCGFE 248 (349)
T ss_dssp TCCEEECCCC-------------------CGGGSCHHHH------TT---------CCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEccCccccccCccc---ccccccCCCCccCHHHh------cC---------CCCCcccchHHHHHHHHHHHhCCC
Confidence 3445666 5566554432 35678899999999999 32 45778999999999999999999
Q ss_pred CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
||......... ...+.......+.+.......++.+++.+||+.+|.+||++.++.+
T Consensus 249 pf~~~~~~~~~----------------~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 249 PFYDERGDQFM----------------FRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp TTCCTTCHHHH----------------HHHHHTTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CCCCCcccHHH----------------HHHHHhCCCccCCchhhhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 99553322100 0000000000001111223445899999999999999999887665
|
| >3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=8.2e-15 Score=140.18 Aligned_cols=112 Identities=14% Similarity=0.184 Sum_probs=73.8
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+...... .+...||+.|||||++ . ...+++++|||||||+||||+||+ ||.
T Consensus 155 ~kl~Dfg~~~~~~~~~~~--~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslG~il~ell~g~~pf~ 217 (297)
T 3fxz_A 155 VKLTDFGFCAQITPEQSK--RSTMVGTPYWMAPEVV------T---------RKAYGPKVDIWSLGIMAIEMIEGEPPYL 217 (297)
T ss_dssp EEECCCTTCEECCSTTCC--BCCCCSCGGGCCHHHH------H---------CSCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred EEEeeCCCceecCCcccc--cCCccCCcCccChhhh------c---------CCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence 4555 555555544332 5678899999999999 2 245678999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
........ ....... .............+.+++.+||+.+|.+||++.++.+
T Consensus 218 ~~~~~~~~-----------------~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 218 NENPLRAL-----------------YLIATNG-TPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp TSCHHHHH-----------------HHHHHHC-SCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCHHHHH-----------------HHHHhCC-CCCCCCccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 54322110 0000000 0000011123345889999999999999999887655
|
| >4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.9e-15 Score=140.56 Aligned_cols=114 Identities=23% Similarity=0.286 Sum_probs=77.3
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++..... .+...||+.|+|||++ .+ ....+++++|||||||+||||++|+ ||.
T Consensus 168 ~kl~Dfg~~~~~~~~-----~~~~~g~~~y~aPE~~------~~-------~~~~~~~~~Di~slG~~l~~l~~g~~pf~ 229 (287)
T 4f0f_A 168 AKVADFGLSQQSVHS-----VSGLLGNFQWMAPETI------GA-------EEESYTEKADTYSFAMILYTILTGEGPFD 229 (287)
T ss_dssp EEECCCTTCBCCSSC-----EECCCCCCTTSCGGGS------SC-------SSCEECHHHHHHHHHHHHHHHHHSSCTTT
T ss_pred EEeCCCCcccccccc-----ccccCCCccccCchhh------cc-------CCCCcCchhhHHHHHHHHHHHHcCCCCCc
Confidence 5666 455544433 5668899999999998 22 2345678999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH--HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHh
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL--LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~ 164 (552)
......+. ........ ...........+.+++.+||+.+|.+||++.++.+.+.+
T Consensus 230 ~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ 286 (287)
T 4f0f_A 230 EYSYGKIK-------------------FINMIREEGLRPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSE 286 (287)
T ss_dssp TCCCCHHH-------------------HHHHHHHSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred cccccHHH-------------------HHHHHhccCCCCCCCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHh
Confidence 53322110 00000000 011112234459999999999999999999999887764
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-11 Score=115.04 Aligned_cols=231 Identities=10% Similarity=0.028 Sum_probs=160.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCC-CCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCc
Q 008820 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHD-HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDW 340 (552)
Q Consensus 262 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 340 (552)
++.|++++.|+.|.+||.++|+.+.++..+. ..+.++.++|+++ +++ +.++.|..||. +++....+.. ....
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~-~G~~~W~~~~---~~~~ 77 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE-ILF--SYSKGAKMITR-DGRELWNIAA---PAGC 77 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC-EEE--ECBSEEEEECT-TSCEEEEEEC---CTTC
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC-EEE--eCCCCEEEECC-CCCEEEEEcC---CCCc
Confidence 6789999999999999999999999999876 5789999999775 555 45788999998 5544433332 1111
Q ss_pred eeeeEEEEeeCCCEEEEeeC-CCcEEEEECCCCceeEEecC------CCCCeEEEEEe--CCEEEEEeCCCcEEEEECCC
Q 008820 341 RYSGIHALTTSGRYLYTGSG-DRTIKAWSLLDGTLSCTMSG------HKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSD 411 (552)
Q Consensus 341 ~~~~~~~~~~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~------h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~ 411 (552)
. .....+.++|+.+++.+. ++.|..+|. +|+.+..+.. +......+++. ++++++...++.|.+||..
T Consensus 78 ~-~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 78 E-MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN- 154 (276)
T ss_dssp E-EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred c-ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-
Confidence 1 123456789999998887 788888885 7887776642 11233445555 4588889999999999998
Q ss_pred CceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeeccc------ceEEEEEe--cCCEEEEEe
Q 008820 412 HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHK------GSVFAVFL--EGKWLFTGG 481 (552)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~------~~v~~v~~--~~~~l~sgs 481 (552)
|+.+.++.... .... ....++++.+++++.++.|..+|.. +.+..+..+. ..+..+.. +|..+++..
T Consensus 155 G~~~w~~~~~~--~~~~-~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 155 GQLLNSVKLSG--TPFS-SAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp SCEEEEEECSS--CCCE-EEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CCEEEEEECCC--Cccc-eeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 99999988652 2233 4678899999999888899999954 5555554332 22455443 788777764
Q ss_pred CC--------CeEEEEec-CCCeeeeeeccCCC
Q 008820 482 WD--------KTVSVQEL-AGDEFEEDVIPTGA 505 (552)
Q Consensus 482 ~d--------g~i~iwd~-~~~~~~~~~~~~~~ 505 (552)
.. +..+++++ .+++....+.....
T Consensus 232 ~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~ 264 (276)
T 3no2_A 232 QGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVK 264 (276)
T ss_dssp CTTCTTGGGSCCCSEEEECTTSBEEEEECCTTT
T ss_pred cCccccccccCCceEEEECCCCCEEEEecCccc
Confidence 21 23456666 35666666555444
|
| >3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.7e-15 Score=143.53 Aligned_cols=126 Identities=17% Similarity=0.232 Sum_probs=70.0
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+++.+.............||+.|||||++...... .........+++++|||||||+||||++|+ ||
T Consensus 145 ~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~----~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf 220 (343)
T 3dbq_A 145 MLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSS----RENGKSKSKISPKSDVWSLGCILYYMTYGKTPF 220 (343)
T ss_dssp EEEECCCSSSCCC------------CCCCSSCCHHHHHHCC---------------CCHHHHHHHHHHHHHHHHHSSCTT
T ss_pred cEEEeecccccccCcccccccCCCCcCCcCcCCHHHHhhcccc----ccccccccCCCchhhHHHHHHHHHHHHhCCCcc
Confidence 46666 677776655444446678999999999999431110 000011256778999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHH-HHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTY-LLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
...... + ......... ............+.+++.+||+.+|.+||++.++.+.
T Consensus 221 ~~~~~~-~------------------~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h 274 (343)
T 3dbq_A 221 QQIINQ-I------------------SKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 274 (343)
T ss_dssp TTCCSH-H------------------HHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred hhhhhH-H------------------HHHHHHhcCCcccCCcccCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence 652111 0 000000000 0001111223358999999999999999999887653
|
| >4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-14 Score=139.04 Aligned_cols=146 Identities=12% Similarity=0.152 Sum_probs=81.0
Q ss_pred hhhhhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhC
Q 008820 9 VTKSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG 86 (552)
Q Consensus 9 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg 86 (552)
+.....|+. |+++.+..... .....||+.|+|||++....... .....++.++|||||||+||||+||
T Consensus 150 ~~~~~~kL~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~-------~~~~~~~~~~DiwslG~il~el~~g 219 (319)
T 4euu_A 150 DGQSVYKLTDFGAARELEDDEQ---FVSLYGTEEYLHPDMYERAVLRK-------DHQKKYGATVDLWSIGVTFYHAATG 219 (319)
T ss_dssp TSCEEEEECCCTTCEECCTTCC---BCCCCSCGGGCCHHHHHHHTSCC-------CCCCCBCTTHHHHHHHHHHHHHHHS
T ss_pred CCCceEEEccCCCceecCCCCc---eeecccCCCccCHHHhhhccccc-------cccCCCCcHHHHHHHHHHHHHHHhC
Confidence 344456666 66666555432 45678999999999984322110 0135677899999999999999999
Q ss_pred C-CchHHHhh-----hhhhccccCCCchhhhhhh----hHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchh
Q 008820 87 E-QFTKELID-----YIRCVSTKASDDNIACLGM----YMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (552)
Q Consensus 87 ~-pf~~~~~~-----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~ 156 (552)
+ ||...... .+..+.....+..|..... ...|....+ ............+.+++.+||+.+|.+||++.
T Consensus 220 ~~pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ 298 (319)
T 4euu_A 220 SLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMP-VSCSLSRGLQVLLTPVLANILEADQEKCWGFD 298 (319)
T ss_dssp SCSEECTTCGGGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCC-TTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHH
T ss_pred CCCCCCCCccchhHHHHHHHhcCCCcccchhhhcccCCccccCccCC-cccccchhHHHHhHHHHHHhccCChhhhccHH
Confidence 9 99642211 0000000000000000000 000000000 00000000122488899999999999999999
Q ss_pred hHHHHHHhh
Q 008820 157 NVWKCIREL 165 (552)
Q Consensus 157 ~~~~~l~~~ 165 (552)
++.+....-
T Consensus 299 ell~h~~d~ 307 (319)
T 4euu_A 299 QFFAETSDI 307 (319)
T ss_dssp HHHHHHHHH
T ss_pred HhhhccHHH
Confidence 998876653
|
| >1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-14 Score=141.85 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=70.2
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+... ...+.|||.|||||++ . ...++.++|||||||+||||++|+ ||.
T Consensus 180 ~kL~DFg~a~~~~~~-----~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslG~il~ell~g~~Pf~ 239 (350)
T 1rdq_E 180 IQVTDFGFAKRVKGR-----TWTLCGTPEALAPEII------L---------SKGYNKAVDWWALGVLIYEMAAGYPPFF 239 (350)
T ss_dssp EEECCCTTCEECSSC-----BCCCEECGGGCCHHHH------T---------TCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred EEEcccccceeccCC-----cccccCCccccCHHHh------c---------CCCCCCcCCEecccHhHhHHhhCCCCCC
Confidence 4555 667666554 3467899999999999 2 245678999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcc
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~ 154 (552)
......+ ...+.............++.+++.+||+.+|.+||+
T Consensus 240 ~~~~~~~---------------------~~~i~~~~~~~p~~~~~~~~~li~~lL~~dp~~R~~ 282 (350)
T 1rdq_E 240 ADQPIQI---------------------YEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFG 282 (350)
T ss_dssp CSSHHHH---------------------HHHHHHCCCCCCTTCCHHHHHHHHHHSCSCTTTCTT
T ss_pred CCCHHHH---------------------HHHHHcCCCCCCCCCCHHHHHHHHHHhhcCHHhccC
Confidence 6443311 111111111111223456999999999999999998
|
| >2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A | Back alignment and structure |
|---|
Probab=99.47 E-value=7.9e-15 Score=142.09 Aligned_cols=112 Identities=16% Similarity=0.205 Sum_probs=74.6
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+++.+..... .....||+.|||||++ . ...+++++|||||||+||+|++|+ ||
T Consensus 157 ~~kl~Dfg~~~~~~~~~~---~~~~~gt~~y~aPE~~------~---------~~~~~~~~Di~slG~il~~l~~g~~pf 218 (321)
T 2a2a_A 157 HIKLIDFGLAHEIEDGVE---FKNIFGTPEFVAPEIV------N---------YEPLGLEADMWSIGVITYILLSGASPF 218 (321)
T ss_dssp CEEECCCTTCEECCTTCC---CCCCCSCGGGCCHHHH------T---------TCCCCTHHHHHHHHHHHHHHHHSCCSS
T ss_pred CEEEccCccceecCcccc---ccccCCCCCccCcccc------c---------CCCCCCccccHHHHHHHHHHHHCCCCC
Confidence 35565 55655554322 4677899999999998 2 255678999999999999999999 99
Q ss_pred hHHHhhhh-hhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYI-RCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.......+ ..+... ....+..........+.+++.+||+.+|.+||++.++.+
T Consensus 219 ~~~~~~~~~~~i~~~------------------~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 219 LGDTKQETLANITSV------------------SYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALR 272 (321)
T ss_dssp CCSSHHHHHHHHHTT------------------CCCCCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred CCCCHHHHHHHHHhc------------------ccccChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 65433211 100000 000001111223445899999999999999999987765
|
| >1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-14 Score=141.99 Aligned_cols=107 Identities=14% Similarity=0.163 Sum_probs=72.4
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|++ |+++....... ....+.||+.|||||++ .+ ..++.++|+|||||+||||++|+ ||.
T Consensus 157 vkL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~ell~g~~Pf~ 219 (345)
T 1xjd_A 157 IKIADFGMCKENMLGDA--KTNTFCGTPDYIAPEIL------LG---------QKYNHSVDWWSFGVLLYEMLIGQSPFH 219 (345)
T ss_dssp EEECCCTTCBCCCCTTC--CBCCCCSCGGGCCHHHH------TT---------CCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred EEEeEChhhhhcccCCC--cccCCCCCcccCChhhh------cC---------CCCCChhhhHHHHHHHHHHhcCCCCCC
Confidence 4555 55654432222 25678999999999999 32 45678999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchh-hH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT-NV 158 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~-~~ 158 (552)
..+...+ ...+.............++.+++.+||+.+|.+||+.. ++
T Consensus 220 ~~~~~~~---------------------~~~i~~~~~~~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i 267 (345)
T 1xjd_A 220 GQDEEEL---------------------FHSIRMDNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDI 267 (345)
T ss_dssp CSSHHHH---------------------HHHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCG
T ss_pred CCCHHHH---------------------HHHHHhCCCCCCcccCHHHHHHHHHHhcCCHhHcCCChHHH
Confidence 6443311 11111000111112344589999999999999999986 44
|
| >1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-14 Score=139.12 Aligned_cols=100 Identities=14% Similarity=0.091 Sum_probs=68.7
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+... ...+.|||.|||||++ . ...++.++|+|||||+||||++|+ ||.
T Consensus 145 ~kL~Dfg~a~~~~~~-----~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslG~il~ell~g~~pf~ 204 (318)
T 1fot_A 145 IKITDFGFAKYVPDV-----TYTLCGTPDYIAPEVV------S---------TKPYNKSIDWWSFGILIYEMLAGYTPFY 204 (318)
T ss_dssp EEECCCSSCEECSSC-----BCCCCSCTTTCCHHHH------T---------TCCBCTTHHHHHHHHHHHHHHHSSCTTC
T ss_pred EEEeecCcceecCCc-----cccccCCccccCHhHh------c---------CCCCCcccchhhhHHHHHHHHhCCCCCC
Confidence 4555 566655443 4567899999999999 2 245678999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcc
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~ 154 (552)
..+...+ ...+.............++.+++.+||+.+|.+||.
T Consensus 205 ~~~~~~~---------------------~~~i~~~~~~~p~~~~~~~~~li~~lL~~dp~~R~~ 247 (318)
T 1fot_A 205 DSNTMKT---------------------YEKILNAELRFPPFFNEDVKDLLSRLITRDLSQRLG 247 (318)
T ss_dssp CSSHHHH---------------------HHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTTCTT
T ss_pred CCCHHHH---------------------HHHHHhCCCCCCCCCCHHHHHHHHHHhccCHHHcCC
Confidence 5433311 111111111111223445899999999999999994
|
| >3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=8.2e-15 Score=150.68 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=77.4
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p 88 (552)
...|+. |+|+.+..... .....||+.|||||++ ...+++++|||||||+||+|++|+ |
T Consensus 176 ~~~kl~DfG~a~~~~~~~~---~~~~~gt~~y~aPE~l----------------~~~~~~~~DiwslG~il~~ll~g~~p 236 (494)
T 3lij_A 176 ALIKIVDFGLSAVFENQKK---MKERLGTAYYIAPEVL----------------RKKYDEKCDVWSIGVILFILLAGYPP 236 (494)
T ss_dssp CCEEECCCTTCEECBTTBC---BCCCCSCTTTCCHHHH----------------TTCBCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CcEEEEECCCCeECCCCcc---ccccCCCcCeeCHHHH----------------cccCCCchhHHHHHHHHHHHHhCCCC
Confidence 346666 66666655432 5678899999999998 235778999999999999999999 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
|.+.....+. ..+.......+.+.+......+.+++.+||+.+|.+||++.++.+
T Consensus 237 f~~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 291 (494)
T 3lij_A 237 FGGQTDQEIL-----------------RKVEKGKYTFDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALE 291 (494)
T ss_dssp SCCSSHHHHH-----------------HHHHHTCCCCCSGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCCCHHHHH-----------------HHHHhCCCCCCchhcccCCHHHHHHHHHHCCCChhhCccHHHHhc
Confidence 9764433111 011110000111222334456899999999999999999887654
|
| >3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=9.7e-15 Score=138.28 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=75.3
Q ss_pred hhhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-
Q 008820 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (552)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~- 87 (552)
...+|+. |+++.+.... ......||+.|+|||++ . +.+++++|||||||++|+|++|+
T Consensus 145 ~~~~~l~Dfg~~~~~~~~~---~~~~~~~t~~y~aPE~~------~----------~~~~~~~Di~slG~~l~~l~~g~~ 205 (277)
T 3f3z_A 145 DSPLKLIDFGLAARFKPGK---MMRTKVGTPYYVSPQVL------E----------GLYGPECDEWSAGVMMYVLLCGYP 205 (277)
T ss_dssp TCCEEECCCTTCEECCTTS---CBCCCCSCTTTCCHHHH------T----------TCBCTTHHHHHHHHHHHHHHHSSC
T ss_pred CCcEEEEecccceeccCcc---chhccCCCCCccChHHh------c----------ccCCchhhehhHHHHHHHHHHCCC
Confidence 3445666 5565555443 25667899999999998 2 34678999999999999999999
Q ss_pred CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
||.......+. ..+.......+..........+.+++.+||+.+|.+||++.++.+
T Consensus 206 p~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 206 PFSAPTDSEVM-----------------LKIREGTFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALE 261 (277)
T ss_dssp SSCCSSHHHHH-----------------HHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred CCCCCCHHHHH-----------------HHHHhCCCCCCchhhhcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 99654322110 000000000111111223445899999999999999999887654
|
| >2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-14 Score=142.98 Aligned_cols=114 Identities=18% Similarity=0.267 Sum_probs=73.9
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDY 96 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~ 96 (552)
|+++.+..... .....||+.|||||++...... ....+++++|||||||+||+|+||+ ||.......
T Consensus 245 G~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~---------~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~ 312 (365)
T 2y7j_A 245 GFSCHLEPGEK---LRELCGTPGYLAPEILKCSMDE---------THPGYGKEVDLWACGVILFTLLAGSPPFWHRRQIL 312 (365)
T ss_dssp TTCEECCTTCC---BCCCCSCGGGCCHHHHHHTTCT---------TSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred CcccccCCCcc---cccCCCCCCccChhhccccccc---------cCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHH
Confidence 55666654432 4668899999999998432211 1235678999999999999999999 996533221
Q ss_pred hhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 97 IRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
+. ..+.......+.+.+......+.+++.+||+.+|.+||++.++.+
T Consensus 313 ~~-----------------~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 313 ML-----------------RMIMEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQ 359 (365)
T ss_dssp HH-----------------HHHHHTCCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HH-----------------HHHHhCCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 10 000000000011112233445899999999999999999888765
|
| >2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.2e-14 Score=138.81 Aligned_cols=125 Identities=15% Similarity=0.061 Sum_probs=83.0
Q ss_pred hhhcc--cccccccccchh-----hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh
Q 008820 13 VAKVG--CVGSRICDKEVG-----LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI 85 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~-----~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt 85 (552)
.+|+. |+++.+...... ...+...||+.|||||++ .+ ..+++++|||||||+||||++
T Consensus 199 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~~ 263 (352)
T 2jii_A 199 QVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLH------KG---------CGPSRRSDLQSLGYCMLKWLY 263 (352)
T ss_dssp EEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHH------TT---------CCCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEecCcceeeccCCCccccccccccccccCCccccCHHHH------cc---------CCCCchhhHHHHHHHHHHHHh
Confidence 45666 556655544321 123566999999999999 33 457789999999999999999
Q ss_pred CC-CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhh------cCccccHHHHHHhhcccCCCCCcchhhH
Q 008820 86 GE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKF------GSEFVSLQLMFCQCLNFDPGCRPLLTNV 158 (552)
Q Consensus 86 g~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~l~~~p~~R~~~~~~ 158 (552)
|+ ||........ ............+.... .....++.+++.+||+.+|.+||++.++
T Consensus 264 g~~pf~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l 327 (352)
T 2jii_A 264 GFLPWTNCLPNTE----------------DIMKQKQKFVDKPGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAML 327 (352)
T ss_dssp SCCTTGGGTTCHH----------------HHHHHHHHHHHSCCCEECTTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHH
T ss_pred CCCCcccCCcCHH----------------HHHHHHHhccCChhhhhhhccccCCCcHHHHHHHHHHHhCChhhCCCHHHH
Confidence 99 9977431100 00011111111111100 1224569999999999999999999999
Q ss_pred HHHHHhhhcC
Q 008820 159 WKCIRELIIK 168 (552)
Q Consensus 159 ~~~l~~~~~~ 168 (552)
.+.+..++..
T Consensus 328 ~~~L~~~~~~ 337 (352)
T 2jii_A 328 RNNLEALLQD 337 (352)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887643
|
| >3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-14 Score=144.67 Aligned_cols=131 Identities=14% Similarity=0.127 Sum_probs=86.4
Q ss_pred hhhhhhhcc--cccccccccchh-----hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhh
Q 008820 9 VTKSVAKVG--CVGSRICDKEVG-----LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILL 81 (552)
Q Consensus 9 ~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~ 81 (552)
+..-..|+. |+++.+...... .....+.||+.|||||++ .+ ..++.++|||||||+||
T Consensus 140 ~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~------~~---------~~~s~~sDvwSlGvil~ 204 (483)
T 3sv0_A 140 RRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTH------LG---------IEQSRRDDLESLGYVLM 204 (483)
T ss_dssp GGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHH------TT---------CCCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCcceeccCCccccccccccccccCCCccccCHHHh------cC---------CCCChHHHHHHHHHHHH
Confidence 344456666 667666554321 113378999999999999 33 55678999999999999
Q ss_pred hhhhCC-CchHHHhhhhhhccccCCCchhhhhhhhHHHHHH-HHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHH
Q 008820 82 SLLIGE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEK-VTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVW 159 (552)
Q Consensus 82 ~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~ 159 (552)
||++|+ ||......... ..+..+... ..............++.+++.+||+.+|.+||++.++.
T Consensus 205 elltG~~Pf~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~ 270 (483)
T 3sv0_A 205 YFLRGSLPWQGLKAGTKK--------------QKYEKISEKKVATSIEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLK 270 (483)
T ss_dssp HHHHSSCTTSSCCCSSHH--------------HHHHHHHHHHHHSCHHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHH
T ss_pred HHHhCCCCCccccchhHH--------------HHHHHHhhccccccHHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHH
Confidence 999999 99653221000 001111111 11111111123445699999999999999999999999
Q ss_pred HHHHhhhcC
Q 008820 160 KCIRELIIK 168 (552)
Q Consensus 160 ~~l~~~~~~ 168 (552)
+.+..++..
T Consensus 271 ~~L~~l~~~ 279 (483)
T 3sv0_A 271 RLFRDLFIR 279 (483)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887643
|
| >3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-14 Score=136.71 Aligned_cols=129 Identities=15% Similarity=0.131 Sum_probs=74.9
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+.... ..+...||+.|||||++ . ...++.++|||||||+||||++|+ ||.
T Consensus 159 ~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslG~il~~l~~g~~pf~ 220 (308)
T 3g33_A 159 VKLADFGLARIYSYQM---ALTPVVVTLWYRAPEVL------L---------QSTYATPVDMWSVGCIFAEMFRRKPLFC 220 (308)
T ss_dssp EEECSCSCTTTSTTCC---CSGGGGCCCSSCCHHHH------H---------TSCCCSTHHHHHHHHHHHHTTTSSCSCC
T ss_pred EEEeeCccccccCCCc---ccCCccccccccCchHH------c---------CCCCCchHHHHHHHHHHHHHHhCCCCCC
Confidence 4555 5565554333 25678999999999999 2 255778999999999999999999 995
Q ss_pred HHHhhh----hhhccccCCCchhhhh-hhhHHHHH-HHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDY----IRCVSTKASDDNIACL-GMYMAWME-KVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
...... +........+..|... ........ ..+.............+.+++.+||+.+|.+||++.++.+
T Consensus 221 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 296 (308)
T 3g33_A 221 GNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ 296 (308)
T ss_dssp CSSHHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence 533221 1100011111111000 00000000 0000000111223445889999999999999999887654
|
| >3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-14 Score=142.23 Aligned_cols=145 Identities=19% Similarity=0.183 Sum_probs=76.3
Q ss_pred EEecchhhhhhhhhcc--cccccccccch-hhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhh
Q 008820 2 ILVMGRRVTKSVAKVG--CVGSRICDKEV-GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVAC 78 (552)
Q Consensus 2 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~ 78 (552)
||+.+........|+. |+|+.+..... ........||+.|||||++ .| ...++.++|||||||
T Consensus 159 Ill~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DiwSlG~ 224 (405)
T 3rgf_A 159 ILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELL------LG--------ARHYTKAIDIWAIGC 224 (405)
T ss_dssp EEECCSSTTTTCEEECCTTCCC----------------CCCTTCCHHHH------TT--------CCSCCHHHHHHHHHH
T ss_pred eEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCcccCchhh------cC--------CCcccchhhhHHHHH
Confidence 4554443444566777 66766554321 1235678999999999999 22 234678999999999
Q ss_pred hhhhhhhCC-CchHHH-------------hhhhhhccccCCCchhhhhhhhHHHHHHHHH-------------HHhhhhc
Q 008820 79 ILLSLLIGE-QFTKEL-------------IDYIRCVSTKASDDNIACLGMYMAWMEKVTY-------------LLENKFG 131 (552)
Q Consensus 79 ~l~~lltg~-pf~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 131 (552)
+||||+||+ ||.... +..+....+......|............... .......
T Consensus 225 il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (405)
T 3rgf_A 225 IFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKV 304 (405)
T ss_dssp HHHHHHHSSCTTCCCC------CCCCHHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTC
T ss_pred HHHHHHhCCCCCCCccccccccccchHHHHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCC
Confidence 999999999 995322 1111111111112222211110000000000 0011111
Q ss_pred CccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 132 SEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 132 ~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.....+.+++.+||+.+|.+||++.++.+
T Consensus 305 ~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~ 333 (405)
T 3rgf_A 305 KPDSKAFHLLQKLLTMDPIKRITSEQAMQ 333 (405)
T ss_dssp CTTSHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence 12445889999999999999999887665
|
| >2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-14 Score=142.44 Aligned_cols=118 Identities=15% Similarity=0.207 Sum_probs=82.6
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
..|+. |+++.+.............||+.|||||++ . ...++.++|||||||+||||+| |+ |
T Consensus 241 ~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~------~---------~~~~~~~~DvwslG~il~ellt~g~~p 305 (370)
T 2psq_A 241 VMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEAL------F---------DRVYTHQSDVWSFGVLMWEIFTLGGSP 305 (370)
T ss_dssp CEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHH------H---------TCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred CEEEccccCCcccCcccceecccCCCcccceECHhHh------c---------CCCCCcHHHHHHHHHHHHHHHcCCCCC
Confidence 35666 667666655443335667889999999999 2 2456789999999999999999 99 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|.......+. ..+... ..........++.+++.+||+.+|.+||++.++.+.+.+++
T Consensus 306 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il 363 (370)
T 2psq_A 306 YPGIPVEELF---------------------KLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIL 363 (370)
T ss_dssp STTCCGGGHH---------------------HHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHH---------------------HHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 9764433111 000000 00111123445899999999999999999999999988875
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-10 Score=113.38 Aligned_cols=238 Identities=8% Similarity=0.046 Sum_probs=157.5
Q ss_pred cceEEEEEc-CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccc
Q 008820 253 DCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPL 331 (552)
Q Consensus 253 ~~V~~l~~s-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 331 (552)
.....+++. ++.+++...++.|.+||..+++.+.++.. ......+++++++ .++++...++.|.+||..+.+....+
T Consensus 44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred ccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEE
Confidence 346778888 55566666689999999999999998864 4678899998876 56555558999999999876543333
Q ss_pred cccccC-CCceeeeEEEEeeCCCEEEEee--CCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CCEEEEEeC-C-----
Q 008820 332 KKWNEE-KDWRYSGIHALTTSGRYLYTGS--GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NGVLYSGSR-D----- 401 (552)
Q Consensus 332 ~~~~~~-~~~~~~~~~~~~~~~~~l~sgs--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~-d----- 401 (552)
..-... .......+ ++ +++.++++. .++.|.++|..+++.+..+... .....+.++ ++.++.++. +
T Consensus 122 ~~g~~~~~~~~p~~i-~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~ 197 (328)
T 3dsm_A 122 ECPDMDMESGSTEQM-VQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSP 197 (328)
T ss_dssp ECTTCCTTTCBCCCE-EE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCS
T ss_pred EcCCccccCCCcceE-EE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCc
Confidence 221100 00011112 23 455555554 4889999999999988887643 345678888 455544443 3
Q ss_pred -----CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--cee--eeecccceEEEEEe
Q 008820 402 -----GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMK--SMQTHKGSVFAVFL 472 (552)
Q Consensus 402 -----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~--~~~~h~~~v~~v~~ 472 (552)
+.|.++|..+++....+.......... ++++|+++.++++.. .|.+||... ... .+..+......+.+
T Consensus 198 ~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~-la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~v 274 (328)
T 3dsm_A 198 YGYEAPSLYRIDAETFTVEKQFKFKLGDWPSE-VQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTV 274 (328)
T ss_dssp SCBCCCEEEEEETTTTEEEEEEECCTTCCCEE-EEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEE
T ss_pred cccCCceEEEEECCCCeEEEEEecCCCCCcee-EEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEE
Confidence 789999999998887776532222333 799999999988765 899999653 211 11211344555554
Q ss_pred ---cCCEEEEE----eCCCeEEEEecCCCeeeeee
Q 008820 473 ---EGKWLFTG----GWDKTVSVQELAGDEFEEDV 500 (552)
Q Consensus 473 ---~~~~l~sg----s~dg~i~iwd~~~~~~~~~~ 500 (552)
++..+++. ..++.|.+||.. ++....+
T Consensus 275 dp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 275 NPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp CTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred cCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 45555555 568999999998 5554443
|
| >3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-14 Score=138.26 Aligned_cols=112 Identities=20% Similarity=0.243 Sum_probs=75.0
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |++..+..... .....||+.|||||++ . ...+++++|||||||++|+|++|+ ||.
T Consensus 147 ~kl~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~~l~~l~~g~~pf~ 208 (284)
T 3kk8_A 147 VKLADFGLAIEVNDSEA---WHGFAGTPGYLSPEVL------K---------KDPYSKPVDIWACGVILYILLVGYPPFW 208 (284)
T ss_dssp EEECCCTTCEECCSSCB---CCCSCSCGGGCCHHHH------T---------TCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred EEEeeceeeEEcccCcc---ccCCCCCcCCcCchhh------c---------CCCCCcccchHHHHHHHHHHHHCCCCCC
Confidence 5566 45555544432 4568899999999999 2 255678999999999999999999 995
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
......+. ..........+.........++.+++.+||+.+|.+||++.++.+
T Consensus 209 ~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (284)
T 3kk8_A 209 DEDQHRLY-----------------AQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALK 261 (284)
T ss_dssp CSSHHHHH-----------------HHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCchhHHH-----------------HHHHhccccCCchhhcccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 54332110 000010000111112233456899999999999999999887665
|
| >4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-14 Score=141.18 Aligned_cols=113 Identities=17% Similarity=0.141 Sum_probs=71.7
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+|+....... ....++|||.|||||++ .+ ..++.++|+|||||+||||++|+ ||.
T Consensus 192 ikL~DFGla~~~~~~~~--~~~~~~gt~~Y~aPE~l------~~---------~~~~~~~DiwslGvllyell~G~~Pf~ 254 (396)
T 4dc2_A 192 IKLTDYGMCKEGLRPGD--TTSTFCGTPNYIAPEIL------RG---------EDYGFSVDWWALGVLMFEMMAGRSPFD 254 (396)
T ss_dssp EEECCCTTCBCCCCTTC--CBCCCCBCGGGCCHHHH------TT---------CCBCTHHHHHHHHHHHHHHHHSSCSST
T ss_pred EEEeecceeeecccCCC--ccccccCCcccCCchhh------cC---------CCCChHHHHHHHHHHHHHHHhCCCCCc
Confidence 4555 56654322222 26788999999999999 33 55678999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcch
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~ 155 (552)
........ .+ .........+.......+.....++.+++.+||+.+|.+||++
T Consensus 255 ~~~~~~~~---~~---------~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 307 (396)
T 4dc2_A 255 IVGSSDNP---DQ---------NTEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGC 307 (396)
T ss_dssp TTTC------------------CCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred cccccccc---ch---------hhHHHHHHHHhccccCCCCcCCHHHHHHHHHHhcCCHhHcCCC
Confidence 42211000 00 0011122222211112222345569999999999999999996
|
| >2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.4e-15 Score=144.65 Aligned_cols=113 Identities=19% Similarity=0.166 Sum_probs=75.8
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+++.+..... .....||+.|||||++ . ...+++++|||||||+||||++|+ ||
T Consensus 227 ~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslG~il~elltg~~pf 288 (373)
T 2x4f_A 227 QIKIIDFGLARRYKPREK---LKVNFGTPEFLAPEVV------N---------YDFVSFPTDMWSVGVIAYMLLSGLSPF 288 (373)
T ss_dssp EEEECCCSSCEECCTTCB---CCCCCSSCTTCCHHHH------T---------TCBCCHHHHHHHHHHHHHHHHHSSCTT
T ss_pred cEEEEeCCCceecCCccc---cccccCCCcEeChhhc------c---------CCCCCcHHhHHHHHHHHHHHHhCCCCC
Confidence 35566 66766655443 4556799999999998 2 255678999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+.....+. ..+.......+.........++.+++.+||+.+|.+||++.++.+
T Consensus 289 ~~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~ 342 (373)
T 2x4f_A 289 LGDNDAETL-----------------NNILACRWDLEDEEFQDISEEAKEFISKLLIKEKSWRISASEALK 342 (373)
T ss_dssp CCSSHHHHH-----------------HHHHHTCCCSCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CCCCHHHHH-----------------HHHHhccCCCChhhhccCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 654322110 000000000011112233456999999999999999999988766
|
| >4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-14 Score=146.08 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=68.5
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.+|+. |+|+....... ....+.||+.|||||++ . ...++.++|||||||+||||++|+ ||
T Consensus 287 ~~kl~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslG~il~ell~g~~Pf 349 (446)
T 4ejn_A 287 HIKITDFGLCKEGIKDGA--TMKTFCGTPEYLAPEVL------E---------DNDYGRAVDWWGLGVVMYEMMCGRLPF 349 (446)
T ss_dssp CEEECCCCCCCTTCC-------CCSSSCGGGCCHHHH------H---------TSCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred CEEEccCCCceeccCCCc--ccccccCCccccCHhhc------C---------CCCCCCccchhhhHHHHHHHhhCCCCC
Confidence 35666 56655433332 36778999999999999 2 255678999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCc
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRP 153 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~ 153 (552)
.......+. ..+.............++.+++.+||+.+|.+||
T Consensus 350 ~~~~~~~~~---------------------~~i~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~ 392 (446)
T 4ejn_A 350 YNQDHEKLF---------------------ELILMEEIRFPRTLGPEAKSLLSGLLKKDPKQRL 392 (446)
T ss_dssp CCSSHHHHH---------------------HHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTST
T ss_pred CCCCHHHHH---------------------HHHHhCCCCCCccCCHHHHHHHHHHcccCHHHhC
Confidence 654433111 1111001111122344689999999999999999
|
| >3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-14 Score=139.41 Aligned_cols=119 Identities=13% Similarity=0.157 Sum_probs=80.6
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
.|+. |+++.+.........+...||+.|||||++. ...+++++|||||||+||||+| |+ ||
T Consensus 154 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~~l~el~~~g~~p~ 218 (325)
T 3kex_A 154 VQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIH---------------FGKYTHQSDVWSYGVTVWELMTFGAEPY 218 (325)
T ss_dssp EEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred EEECCCCcccccCcccccccccCCCCcccccChHHhc---------------cCCCChhhHhHHhHHHHHHHHhCCCCCc
Confidence 4555 6677665554444467788999999999992 2456789999999999999999 99 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhhcC
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELIIK 168 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~~~ 168 (552)
.......+. ..+... ..........++.+++.+||+.+|.+||++.++.+.+..+...
T Consensus 219 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~ 277 (325)
T 3kex_A 219 AGLRLAEVP---------------------DLLEKGERLAQPQICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMARD 277 (325)
T ss_dssp TTSCTTHHH---------------------HHHHTTCBCCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTS
T ss_pred cccCHHHHH---------------------HHHHcCCCCCCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence 764433110 000000 0111122344688999999999999999999999999887643
|
| >1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C | Back alignment and structure |
|---|
Probab=99.45 E-value=6.5e-15 Score=146.88 Aligned_cols=119 Identities=17% Similarity=0.196 Sum_probs=71.3
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p 88 (552)
...|+. |+++.+.... ..+...||+.|||||++ . ...++.++|||||||+||||++|+ |
T Consensus 201 ~~~kl~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslG~il~ell~g~~p 262 (400)
T 1nxk_A 201 AILKLTDFGFAKETTSHN---SLTTPCYTPYYVAPEVL------G---------PEKYDKSCDMWSLGVIMYILLCGYPP 262 (400)
T ss_dssp CCEEECCCTTCEECC--------------CTTCCGGGS------C---------CCCSSSHHHHHHHHHHHHHHHHSSCS
T ss_pred ccEEEEecccccccCCCC---ccccCCCCCCccCHhhc------C---------CCCCCCcccHHHHHHHHHHHHhCCCC
Confidence 445666 6666555433 25678999999999998 2 356788999999999999999999 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
|.......+. + .....+.......+...+.....++.+++.+||+.+|.+||++.++.+.
T Consensus 263 f~~~~~~~~~-------~------~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 263 FYSNHGLAIS-------P------GMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 322 (400)
T ss_dssp CCCCTTCSSC-------C------SHHHHHHHTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred CCCCcccccc-------H------HHHHHHHcCcccCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 9764322100 0 0001111100011111122344569999999999999999998887664
|
| >3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-14 Score=141.31 Aligned_cols=118 Identities=12% Similarity=0.120 Sum_probs=78.7
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
+|+. |+++.+.............||+.|||||++. ...+++++|||||||+||||+| |+ ||
T Consensus 156 ~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~---------------~~~~~~~~Di~slG~il~ellt~g~~p~ 220 (327)
T 3poz_A 156 VKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESIL---------------HRIYTHQSDVWSYGVTVWELMTFGSKPY 220 (327)
T ss_dssp EEECCTTHHHHHTTTCC-------CCCGGGSCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred EEEccCcceeEccCCcccccccCCCccccccChHHhc---------------cCCCCchhhhhhhHHHHHHHHhcCCCCc
Confidence 5555 5566655544433456677899999999992 2456789999999999999999 99 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhhc
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~~ 167 (552)
.......+. ..+... ...........+.+++.+||+.+|.+||++.++.+.+..+..
T Consensus 221 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~ 278 (327)
T 3poz_A 221 DGIPASEIS---------------------SILEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp TTCCGGGHH---------------------HHHHTTCCCCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred cCCCHHHHH---------------------HHHHcCCCCCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence 764433211 000000 001112234458899999999999999999999998887764
|
| >3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-14 Score=148.77 Aligned_cols=112 Identities=19% Similarity=0.171 Sum_probs=73.8
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+++.+..... .....|||.|||||++ . +.+++++|||||||+||+|++|+ ||
T Consensus 162 ~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~------~----------~~~~~~~DiwslG~il~~ll~g~~pf 222 (486)
T 3mwu_A 162 DIKIIDFGLSTCFQQNTK---MKDRIGTAYYIAPEVL------R----------GTYDEKCDVWSAGVILYILLSGTPPF 222 (486)
T ss_dssp CEEECSCSCTTTBCCC-------CCTTGGGGCCGGGG------G----------SCCCHHHHHHHHHHHHHHHHHSSCSS
T ss_pred CEEEEECCcCeECCCCCc---cCCCcCCCCCCCHHHh------C----------CCCCchhhHHHHHHHHHHHHhCCCCC
Confidence 35666 56665554432 5677899999999998 2 34678999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+.....+. ..+.......+.+.+.....++.+++.+||+.+|.+||++.++.+
T Consensus 223 ~~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~ 276 (486)
T 3mwu_A 223 YGKNEYDIL-----------------KRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (486)
T ss_dssp CCSSHHHHH-----------------HHHHHTCCCSCSGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred CCCCHHHHH-----------------HHHHhCCCCCCCcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 654333110 000000000011122233456899999999999999999887766
|
| >2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-14 Score=137.87 Aligned_cols=115 Identities=20% Similarity=0.255 Sum_probs=72.3
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
++|+. |+++.+... .....||+.|||||++ .+ ..+++++|||||||+||||+||+ ||
T Consensus 144 ~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~~g~~p~ 203 (307)
T 2eva_A 144 VLKICDFGTACDIQTH-----MTNNKGSAAWMAPEVF------EG---------SNYSEKCDVFSWGIILWEVITRRKPF 203 (307)
T ss_dssp EEEECCCCC-----------------CCTTSSCHHHH------TC---------CCCCTHHHHHHHHHHHHHHHHTCCTT
T ss_pred EEEEcccccccccccc-----cccCCCCCceEChhhh------CC---------CCCCcHHHHHHHHHHHHHHHHCCCCc
Confidence 35666 445444333 3456799999999999 32 56778999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHH-HHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTY-LLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
........ ........ ............+.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 204 ~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~ 262 (307)
T 2eva_A 204 DEIGGPAF-------------------RIMWAVHNGTRPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLM 262 (307)
T ss_dssp TTTCSSHH-------------------HHHHHHHTTCCCCCBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHG
T ss_pred hhhCccHH-------------------HHHHHHhcCCCCCcccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHH
Confidence 65321100 00000000 000111123445899999999999999999999999888765
|
| >2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-14 Score=142.29 Aligned_cols=60 Identities=27% Similarity=0.594 Sum_probs=47.5
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+|+.+... .....||+.|||||++ .| ..+++++|||||||+||||+||+ ||
T Consensus 199 ~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~------~~---------~~~~~~~DiwSlG~il~elltg~~pf 258 (382)
T 2vx3_A 199 AIKIVDFGSSCQLGQR-----IYQYIQSRFYRSPEVL------LG---------MPYDLAIDMWSLGCILVEMHTGEPLF 258 (382)
T ss_dssp CEEECCCTTCEETTCC-----CCSSCSCGGGCCHHHH------TT---------CCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred cEEEEeccCceecccc-----cccccCCccccChHHH------cC---------CCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence 45666 556555443 4568999999999999 33 45779999999999999999999 99
Q ss_pred hHH
Q 008820 90 TKE 92 (552)
Q Consensus 90 ~~~ 92 (552)
.+.
T Consensus 259 ~~~ 261 (382)
T 2vx3_A 259 SGA 261 (382)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
|
| >1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=7.7e-15 Score=145.30 Aligned_cols=112 Identities=18% Similarity=0.197 Sum_probs=74.5
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+..... .....||+.|||||++ . ...++.++|||||||+||||+||+ ||.
T Consensus 190 vkL~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwSlG~il~elltg~~Pf~ 251 (387)
T 1kob_A 190 VKIIDFGLATKLNPDEI---VKVTTATAEFAAPEIV------D---------REPVGFYTDMWAIGVLGYVLLSGLSPFA 251 (387)
T ss_dssp EEECCCTTCEECCTTSC---EEEECSSGGGCCHHHH------T---------TCCBCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred eEEEecccceecCCCcc---eeeeccCCCccCchhc------c---------CCCCCCcccEeeHhHHHHHHHhCCCCCC
Confidence 4555 66666655432 4556899999999999 2 245678999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
......+. ..+.......+.........++.+++.+||+.+|.+||++.++.+
T Consensus 252 ~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 304 (387)
T 1kob_A 252 GEDDLETL-----------------QNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE 304 (387)
T ss_dssp CSSHHHHH-----------------HHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred CCCHHHHH-----------------HHHHhCCCCCCccccccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence 54322110 000000000011111223446899999999999999999887655
|
| >3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-14 Score=141.15 Aligned_cols=113 Identities=18% Similarity=0.174 Sum_probs=69.9
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+++.+.... ......||+.|||||++ . ...+++++|||||||+||+|++|+ ||
T Consensus 172 ~~kL~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslG~il~~ll~g~~pf 233 (327)
T 3lm5_A 172 DIKIVDFGMSRKIGHAC---ELREIMGTPEYLAPEIL------N---------YDPITTATDMWNIGIIAYMLLTHTSPF 233 (327)
T ss_dssp CEEECCGGGCEEC------------CCCGGGCCHHHH------T---------TCCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred cEEEeeCccccccCCcc---ccccccCCcCccCCeee------c---------CCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence 34555 5565554433 25668899999999999 2 356778999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
......... ..+.......+..........+.+++.+||+.+|.+||++.++.+
T Consensus 234 ~~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~ 287 (327)
T 3lm5_A 234 VGEDNQETY-----------------LNISQVNVDYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLS 287 (327)
T ss_dssp CCSSHHHHH-----------------HHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred CCCCchHHH-----------------HHHHhcccccCchhhcccCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence 654332110 000000000011111223445889999999999999999887654
|
| >3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-14 Score=147.46 Aligned_cols=109 Identities=12% Similarity=0.106 Sum_probs=73.9
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+...... ...+.|||.|||||++ .| ..++.++|+|||||+||||+||+ ||.
T Consensus 328 vkL~DFGla~~~~~~~~~--~~~~~GT~~Y~APE~l------~~---------~~~~~~~DiwSlGvilyelltG~~PF~ 390 (543)
T 3c4z_A 328 VRISDLGLAVELKAGQTK--TKGYAGTPGFMAPELL------LG---------EEYDFSVDYFALGVTLYEMIAARGPFR 390 (543)
T ss_dssp EEECCCTTCEECCTTCCC--BCCCCSCTTTSCHHHH------TT---------CCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred EEEeecceeeeccCCCcc--cccccCCccccChhhh------cC---------CCCChHHhcCcchHHHHHHHhCCCCCC
Confidence 4555 667666554332 4567999999999999 32 45778999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchh
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~ 156 (552)
...... ....+...+..............+.+++.+||+.+|.+||+..
T Consensus 391 ~~~~~~-----------------~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~ 439 (543)
T 3c4z_A 391 ARGEKV-----------------ENKELKQRVLEQAVTYPDKFSPASKDFCEALLQKDPEKRLGFR 439 (543)
T ss_dssp CTTCCC-----------------CHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSCCCB
T ss_pred CCccch-----------------hHHHHHHHHhhcccCCCcccCHHHHHHHHHhccCCHhHCCCCc
Confidence 643110 0111222222111112223455699999999999999999863
|
| >3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4e-14 Score=138.15 Aligned_cols=113 Identities=17% Similarity=0.141 Sum_probs=70.5
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++....... ..+.+.||+.|||||++ .+ ..++.++|+|||||+||||++|+ ||.
T Consensus 149 ~kL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~ell~g~~pf~ 211 (345)
T 3a8x_A 149 IKLTDYGMCKEGLRPGD--TTSTFCGTPNYIAPEIL------RG---------EDYGFSVDWWALGVLMFEMMAGRSPFD 211 (345)
T ss_dssp EEECCGGGCBCSCCTTC--CBCCCCSCGGGCCHHHH------TT---------CCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred EEEEeccccccccCCCC--cccccCCCccccCcccc------CC---------CCCChHHhHHHHHHHHHHHHhCCCCcC
Confidence 4555 55654332222 25678999999999999 22 45678999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcch
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~ 155 (552)
......-. .+ .........+.............++.+++.+||+.+|.+||++
T Consensus 212 ~~~~~~~~---~~---------~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 264 (345)
T 3a8x_A 212 IVGSSDNP---DQ---------NTEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGC 264 (345)
T ss_dssp TTTC-------------------CHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred Cccccccc---cc---------ccHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhcCCHhHCCCC
Confidence 42111000 00 0001111111111111112244568999999999999999996
|
| >2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-14 Score=138.81 Aligned_cols=109 Identities=13% Similarity=0.174 Sum_probs=73.7
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+..... ......||+.|||||++ . ...+++++|||||||+||||++|+ ||.
T Consensus 180 ~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~------~---------~~~~~~~~Dv~slG~il~el~~g~~pf~ 242 (321)
T 2c30_A 180 VKLSDFGFCAQISKDVP--KRKSLVGTPYWMAPEVI------S---------RSLYATEVDIWSLGIMVIEMVDGEPPYF 242 (321)
T ss_dssp EEECCCTTCEECCSSSC--CBCCCCSCGGGCCHHHH------T---------TCCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred EEEeeeeeeeecccCcc--ccccccCCccccCHhhh------c---------CCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence 4555 55555544322 24677899999999999 2 356778999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHh---hhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLE---NKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
......+. ......+. .........+.+++.+||+.+|.+||++.++.+
T Consensus 243 ~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 294 (321)
T 2c30_A 243 SDSPVQAM---------------------KRLRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQELLD 294 (321)
T ss_dssp TSCHHHHH---------------------HHHHHSSCCCCTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CCCHHHHH---------------------HHHhcCCCCCcCccccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 54322110 00000000 011123345899999999999999999887655
|
| >2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-14 Score=138.30 Aligned_cols=119 Identities=16% Similarity=0.248 Sum_probs=81.1
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
..|+. |+++.+.............||+.|||||++. ...++.++|||||||+||||+| |+ |
T Consensus 186 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~---------------~~~~~~~~Di~slG~il~~l~t~g~~p 250 (316)
T 2xir_A 186 VVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIF---------------DRVYTIQSDVWSFGVLLWEIFSLGASP 250 (316)
T ss_dssp CEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred CEEECCCccccccccCccceeccCCCcceeecCchhhc---------------cccccchhHHHHHHHHHHHHHhCCCCC
Confidence 35555 5555554443333356788999999999992 2456789999999999999998 99 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|....... ......... ...........+.+++.+||+.+|.+||++.++.+.+..++
T Consensus 251 ~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~ 309 (316)
T 2xir_A 251 YPGVKIDE--------------------EFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 309 (316)
T ss_dssp STTCCCSH--------------------HHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CcccchhH--------------------HHHHHhccCccCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 96633220 000000000 01111223446999999999999999999999999988876
|
| >3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-14 Score=139.84 Aligned_cols=118 Identities=16% Similarity=0.113 Sum_probs=72.0
Q ss_pred hhhcc--cccccccccch--hhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-
Q 008820 13 VAKVG--CVGSRICDKEV--GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~--~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~- 87 (552)
.+|++ |+++.+..... ........||+.|||||++ .+ ....+++++|||||||+||||++|+
T Consensus 208 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~-------~~~~~~~~~DiwslG~il~el~~g~~ 274 (345)
T 3hko_A 208 EIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVL------NT-------TNESYGPKCDAWSAGVLLHLLLMGAV 274 (345)
T ss_dssp CEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHH------TC-------SSSCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred eEEEeeccccccccccCccccccccccCCCccccCchhh------cc-------CCCCCCcHHHHHHHHHHHHHHHHCCC
Confidence 35565 55555433221 1135678899999999998 22 2356778999999999999999999
Q ss_pred CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
||......... ..........+.+........+.+++.+||+.+|.+||++.++.+
T Consensus 275 pf~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~ 330 (345)
T 3hko_A 275 PFPGVNDADTI-----------------SQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDERFDAMRALQ 330 (345)
T ss_dssp SSCCSSHHHHH-----------------HHHHHCCCCTTSGGGGGSCHHHHHHHHHHSCSCTTTSCCHHHHHH
T ss_pred CCCCCChHHHH-----------------HHHHhcccccCCcccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 99653322110 000000000011111123445899999999999999999988765
|
| >3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-14 Score=138.85 Aligned_cols=119 Identities=12% Similarity=0.111 Sum_probs=73.7
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
+|+. |+++.+.............||+.|||||++. ...+++++|||||||+||||++ |+ ||
T Consensus 156 ~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~---------------~~~~~~~~Di~slG~il~ell~~g~~p~ 220 (327)
T 3lzb_A 156 VKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESIL---------------HRIYTHQSDVWSYGVTVWELMTFGSKPY 220 (327)
T ss_dssp EEECCTTC----------------CCCGGGSCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred EEEccCcceeEccCccccccccCCCccccccCHHHHc---------------CCCCChHHHHHHHHHHHHHHHHCCCCCC
Confidence 4555 6666665554444456677899999999992 2456789999999999999999 99 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhhc
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~~ 167 (552)
.......+. ...... ...........++.+++.+||+.+|.+||++.++.+.+..+..
T Consensus 221 ~~~~~~~~~-----------------~~~~~~---~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~ 278 (327)
T 3lzb_A 221 DGIPASEIS-----------------SILEKG---ERLPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp TTCCGGGHH-----------------HHHHTT---CCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHH-----------------HHHHcC---CCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence 764433111 000000 0001112234458999999999999999999999999888763
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.6e-11 Score=128.05 Aligned_cols=242 Identities=11% Similarity=0.085 Sum_probs=156.9
Q ss_pred cCccceEEEEEc--CCEEEEEeCCC-----cEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCc------
Q 008820 250 GHRDCVTGLAVG--GGFLFSSSFDK-----SIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGG------ 316 (552)
Q Consensus 250 ~H~~~V~~l~~s--~~~l~s~s~dg-----~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~------ 316 (552)
+|...+.+++|+ |++|+.++.++ .|++||+.+++.......+ ..+..++|+|++..+ +.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l-~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGM-FYNAYPQQDGKSDG 199 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEE-EEEECCCCSSCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEE-EEEEECCccccccc
Confidence 355578899999 88888776543 8999999999877643222 236789999988755 44545544
Q ss_pred ----------EEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeC-----CCcEEEEECCC------Cc-e
Q 008820 317 ----------IFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG-----DRTIKAWSLLD------GT-L 374 (552)
Q Consensus 317 ----------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~-----dg~i~iwd~~~------~~-~ 374 (552)
|++|++.++.....+ .+.............++++|++|+.++. +..|++||+.+ +. .
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~-v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 278 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDIL-CAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK 278 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEE-EECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred cccccCCCCEEEEEECCCCcccceE-EeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc
Confidence 999999876432111 1111110111123478999998877664 57899999976 43 3
Q ss_pred eEEecCCCCCeEEEEEe--CCEEEEEeCC----CcEEEEECCCCce--eEEEecCCCCceEEEEEEcCCCCEEEEEECCC
Q 008820 375 SCTMSGHKSAVSTLAVC--NGVLYSGSRD----GTIRLWSLSDHSL--LTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG 446 (552)
Q Consensus 375 ~~~~~~h~~~v~~l~~~--~~~l~s~~~d----g~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 446 (552)
...+..+...+... |+ ++.|+..+.+ +.|.+||+.++.. ...+..+........+.+++++.++++...++
T Consensus 279 ~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g 357 (710)
T 2xdw_A 279 WVKLIDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV 357 (710)
T ss_dssp CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred eEEeeCCCCcEEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC
Confidence 55666666666553 44 5555555543 3699999987752 34444443322333356777778888888888
Q ss_pred c--EEEEeC--CcceeeeecccceEEEEEe--cCCEEEEE-e---CCCeEEEEecCCCe
Q 008820 447 S--IKVWRN--DKFMKSMQTHKGSVFAVFL--EGKWLFTG-G---WDKTVSVQELAGDE 495 (552)
Q Consensus 447 ~--i~iwd~--~~~~~~~~~h~~~v~~v~~--~~~~l~sg-s---~dg~i~iwd~~~~~ 495 (552)
. |++||. ++....+..+.+.+..+++ ++..++.. + ..++|+.||+.+++
T Consensus 358 ~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 358 KNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 5 555675 3456777777778887776 66655533 3 34789999998766
|
| >3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-14 Score=137.76 Aligned_cols=120 Identities=22% Similarity=0.258 Sum_probs=67.3
Q ss_pred hhcc--cccccccccchh-hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 14 AKVG--CVGSRICDKEVG-LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.|+. |+++.+...... .......||+.|||||++ .+ ..++.++|||||||+||||+||+ ||
T Consensus 155 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~~ll~g~~pf 219 (311)
T 3ork_A 155 VKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQA------RG---------DSVDARSDVYSLGCVLYEVLTGEPPF 219 (311)
T ss_dssp EEECCCSCC------------------CCTTCCHHHH------HT---------CCCCHHHHHHHHHHHHHHHHHSSCSC
T ss_pred EEEeeccCcccccccccccccccccCcCcccCCHHHh------cC---------CCCCchHhHHHHHHHHHHHHhCCCCC
Confidence 4555 555555443221 234567899999999999 22 45678999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhh-HHHHHHhh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTN-VWKCIREL 165 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~-~~~~l~~~ 165 (552)
.......+. .+.... ....+.........++.+++.+||+.+|.+||+..+ +.+.+.+.
T Consensus 220 ~~~~~~~~~----------------~~~~~~-~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~ 279 (311)
T 3ork_A 220 TGDSPVSVA----------------YQHVRE-DPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRV 279 (311)
T ss_dssp CCSSHHHHH----------------HHHHHC-CCCCHHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred CCCChHHHH----------------HHHhcC-CCCCcccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHH
Confidence 664433111 000000 000011111223445999999999999999998654 44444443
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-14 Score=151.90 Aligned_cols=105 Identities=17% Similarity=0.157 Sum_probs=72.9
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
-.|+. |+|+....... ....+.|||.|||||++ . ...++.++|||||||+||||++|+ ||
T Consensus 480 ~ikL~DFGla~~~~~~~~--~~~~~~GT~~Y~APE~l------~---------~~~~~~~~DvwSlGvilyelltG~~Pf 542 (674)
T 3pfq_A 480 HIKIADFGMCKENIWDGV--TTKTFCGTPDYIAPEII------A---------YQPYGKSVDWWAFGVLLYEMLAGQAPF 542 (674)
T ss_dssp CEEECCCTTCEECCCTTC--CBCCCCSCSSSCCHHHH------T---------CCCBSTHHHHHHHHHHHHHHHHSSCSS
T ss_pred cEEEeecceeeccccCCc--ccccccCCCcccCHhhh------c---------CCCCCccceEechHHHHHHHHcCCCCC
Confidence 35666 66765333322 26778999999999999 3 356789999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcch
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~ 155 (552)
.+.+...+ ...+.............++.+++.+||+++|.+|++.
T Consensus 543 ~~~~~~~~---------------------~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~ 587 (674)
T 3pfq_A 543 EGEDEDEL---------------------FQSIMEHNVAYPKSMSKEAVAICKGLMTKHPGKRLGC 587 (674)
T ss_dssp CCSSHHHH---------------------HHHHHSSCCCCCTTSCHHHHHHHHHHSCSSSTTCTTC
T ss_pred CCCCHHHH---------------------HHHHHhCCCCCCccCCHHHHHHHHHHccCCHHHCCCC
Confidence 76543321 1111111111112234569999999999999999997
|
| >3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-14 Score=136.17 Aligned_cols=114 Identities=21% Similarity=0.246 Sum_probs=69.2
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+++.+.... .....||+.|+|||++. ...+++++|||||||++|+|++|+ ||
T Consensus 154 ~~kl~Dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~~l~~l~~g~~p~ 214 (271)
T 3dtc_A 154 ILKITDFGLAREWHRTT----KMSAAGAYAWMAPEVIR---------------ASMFSKGSDVWSYGVLLWELLTGEVPF 214 (271)
T ss_dssp CEEECCCCC-----------------CCGGGSCHHHHH---------------HCCCSHHHHHHHHHHHHHHHHHCCCTT
T ss_pred ceEEccCCccccccccc----ccCCCCccceeCHHHhc---------------cCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence 34555 4455444432 34568999999999982 244678999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~ 164 (552)
......... ..... ..............+.+++.+||+.+|.+||++.++.+.+..
T Consensus 215 ~~~~~~~~~-----------------~~~~~--~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~ 270 (271)
T 3dtc_A 215 RGIDGLAVA-----------------YGVAM--NKLALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTT 270 (271)
T ss_dssp TTSCHHHHH-----------------HHHHT--SCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC
T ss_pred CCCCHHHHH-----------------Hhhhc--CCCCCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhc
Confidence 663322110 00000 000001111233458999999999999999999999887764
|
| >3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=9.5e-15 Score=149.98 Aligned_cols=112 Identities=17% Similarity=0.164 Sum_probs=74.9
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+|+.+..... .....|||.|||||++ . +.+++++|||||||+||+|++|+ ||
T Consensus 167 ~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~------~----------~~~~~~~DiwslG~il~~ll~g~~pf 227 (484)
T 3nyv_A 167 NIRIIDFGLSTHFEASKK---MKDKIGTAYYIAPEVL------H----------GTYDEKCDVWSTGVILYILLSGCPPF 227 (484)
T ss_dssp CEEECCTTHHHHBCCCCS---HHHHTTGGGTCCHHHH------H----------TCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred cEEEEeeeeeEEcccccc---cccCCCCccccCceee------c----------CCCCCcceeHHHHHHHHHHHHCCCCC
Confidence 34555 55665554432 5667899999999998 2 34678999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.......+. ..+.......+.+.+.....++.+++.+||+.+|.+||++.++.+
T Consensus 228 ~~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 228 NGANEYDIL-----------------KKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALD 281 (484)
T ss_dssp CCSSHHHHH-----------------HHHHHCCCCCCSGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCHHHHH-----------------HHHHcCCCCCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence 664433110 000000000011112223446899999999999999999887665
|
| >3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-14 Score=140.90 Aligned_cols=48 Identities=31% Similarity=0.676 Sum_probs=38.1
Q ss_pred hhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHH
Q 008820 31 FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKE 92 (552)
Q Consensus 31 ~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~ 92 (552)
..+..+||+.|||||++ .| ...++.++|||||||+||||++|+ ||.+.
T Consensus 186 ~~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DiwSlG~il~ell~g~~pf~~~ 234 (388)
T 3oz6_A 186 ILTDYVATRWYRAPEIL------LG--------STKYTKGIDMWSLGCILGEILCGKPIFPGS 234 (388)
T ss_dssp ----CCCGGGGCCHHHH------TT--------CCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred cccCCcccCCcCCHHHh------cC--------CCCCCChhhHHHHHHHHHHHHhCCCCCCCC
Confidence 46778999999999999 22 245678999999999999999999 99553
|
| >1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.8e-14 Score=137.68 Aligned_cols=119 Identities=16% Similarity=0.257 Sum_probs=81.5
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
..|+. |+++.+.............||+.|||||++. ...+++++|||||||+||||+| |+ |
T Consensus 183 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~il~ellt~g~~p 247 (313)
T 1t46_A 183 ITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIF---------------NCVYTFESDVWSYGIFLWELFSLGSSP 247 (313)
T ss_dssp EEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTTCCS
T ss_pred CEEEccccccccccccccceeccCCCCcceeeChHHhc---------------CCCCChHHHHHHHHHHHHHHHhCCCCC
Confidence 34555 5566665554433456778899999999982 2456789999999999999999 99 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|....... .......... ..........+.+++.+||+.+|.+||++.++.+.+.+++
T Consensus 248 ~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~ 306 (313)
T 1t46_A 248 YPGMPVDS--------------------KFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQI 306 (313)
T ss_dssp STTCCSSH--------------------HHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCcccchh--------------------HHHHHhccCCCCCCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence 97633220 0000000000 0111223446999999999999999999999999988876
|
| >2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.8e-14 Score=137.33 Aligned_cols=121 Identities=13% Similarity=0.213 Sum_probs=70.4
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
+|+. |+++....... .......||+.|+|||++ . ...+++++|||||||+||||++|+ ||.
T Consensus 173 ~kl~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~il~~l~~g~~pf~ 236 (309)
T 2h34_A 173 AYLVDFGIASATTDEKL-TQLGNTVGTLYYMAPERF------S---------ESHATYRADIYALTCVLYECLTGSPPYQ 236 (309)
T ss_dssp EEECSCCC-----------------CCGGGCCGGGT------C---------C----CCCHHHHHHHHHHHHHHSSCSSC
T ss_pred EEEecCccCcccccccc-ccccccCCCcCccCHHHH------c---------CCCCCchHhHHHHHHHHHHHHHCCCCCC
Confidence 4555 44444443322 124567899999999998 2 355678999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCc-chhhHHHHHHhhhcC
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRP-LLTNVWKCIRELIIK 168 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~-~~~~~~~~l~~~~~~ 168 (552)
......+.. .... ....+..........+.+++.+||+.+|.+|| ++.++.+.+...+..
T Consensus 237 ~~~~~~~~~-----------------~~~~-~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~ 297 (309)
T 2h34_A 237 GDQLSVMGA-----------------HINQ-AIPRPSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALAT 297 (309)
T ss_dssp SCHHHHHHH-----------------HHHS-CCCCGGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC-
T ss_pred CchHHHHHH-----------------Hhcc-CCCCccccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHh
Confidence 654331110 0000 00001111223445699999999999999999 788999988876533
|
| >3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-14 Score=136.52 Aligned_cols=109 Identities=22% Similarity=0.317 Sum_probs=68.5
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p 88 (552)
...|+. |+++.+..... .....||+.|||||++ ...+++++|||||||+||||++|+ |
T Consensus 164 ~~~kl~Dfg~a~~~~~~~~---~~~~~~t~~y~aPE~~----------------~~~~~~~~Di~slG~il~~ll~g~~p 224 (285)
T 3is5_A 164 SPIKIIDFGLAELFKSDEH---STNAAGTALYMAPEVF----------------KRDVTFKCDIWSAGVVMYFLLTGCLP 224 (285)
T ss_dssp CCEEECCCCCCCC-------------CTTGGGCCHHHH----------------TTCCCHHHHHHHHHHHHHHHHHSSCS
T ss_pred CCEEEEeeecceecCCccc---CcCcccccCcCChHHh----------------ccCCCcccCeehHHHHHHHHHhCCCC
Confidence 345666 55655544432 5677899999999998 234678999999999999999999 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHH---hhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLL---ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
|.......+. ....... ..........+.+++.+||+.+|.+||++.++.+
T Consensus 225 f~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 225 FTGTSLEEVQ---------------------QKATYKEPNYAVECRPLTPQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp SCCSSHHHHH---------------------HHHHHCCCCCCC--CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred CCCCCHHHHH---------------------hhhccCCcccccccCcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 9764433110 0000000 0001112345889999999999999999888654
|
| >3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.2e-14 Score=147.88 Aligned_cols=111 Identities=21% Similarity=0.187 Sum_probs=75.6
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+..... .....|||.|||||++ ...+++++|||||||+||+|++|+ ||.
T Consensus 188 ~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~----------------~~~~~~~~DiwslG~il~~ll~g~~pf~ 248 (504)
T 3q5i_A 188 IKIVDFGLSSFFSKDYK---LRDRLGTAYYIAPEVL----------------KKKYNEKCDVWSCGVIMYILLCGYPPFG 248 (504)
T ss_dssp EEECCCTTCEECCTTSC---BCCCCSCTTTCCHHHH----------------TTCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred EEEEECCCCEEcCCCCc---cccccCCcCCCCHHHh----------------ccCCCchHHHHHHHHHHHHHHhCCCCCC
Confidence 4565 56665554432 5677899999999998 235678999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
+.....+. ..+.......+...+.....++.+++.+||+.+|.+||++.++.+
T Consensus 249 ~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~ 301 (504)
T 3q5i_A 249 GQNDQDII-----------------KKVEKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALN 301 (504)
T ss_dssp CSSHHHHH-----------------HHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCHHHHH-----------------HHHHcCCCCCCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 64433211 000000000011122234456999999999999999999887655
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-10 Score=111.82 Aligned_cols=203 Identities=8% Similarity=0.050 Sum_probs=142.8
Q ss_pred cCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCe-EEEEE---------eCCCCCeEEEEEecCCCCEEEEEc-CCCc
Q 008820 250 GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS-HVHTF---------KGHDHKVMAVVYVDEDQPLCISGD-SGGG 316 (552)
Q Consensus 250 ~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~-~~~~~---------~~h~~~v~~v~~~~~~~~~l~s~~-~dg~ 316 (552)
++-.....++++ ++++++...++.|++||..... .+..+ .++-.....++++|+++.++++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 455678999998 7888888889999999976442 45555 244557899999996666777776 6999
Q ss_pred EEEEeCCCCCCCccccccccC-----CCceeeeEEEEeeC-CCEEEEeeCCCcEEEEECCCCceeEEec--CCCCCeEEE
Q 008820 317 IFVWSFSFPLGHEPLKKWNEE-----KDWRYSGIHALTTS-GRYLYTGSGDRTIKAWSLLDGTLSCTMS--GHKSAVSTL 388 (552)
Q Consensus 317 i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l 388 (552)
|++||.+ +.....+...... .......-.+++++ ++.+++...++.|++||..+++.+..+. .+...+.++
T Consensus 168 I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~ 246 (329)
T 3fvz_A 168 IVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI 246 (329)
T ss_dssp EEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE
T ss_pred EEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee
Confidence 9999943 2221111111000 00111223477787 6677777888999999998899988873 456778888
Q ss_pred EEeCCEEEEEe--------CCCcEEEEECCCCceeEEEec--CCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 008820 389 AVCNGVLYSGS--------RDGTIRLWSLSDHSLLTVLEE--DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND 454 (552)
Q Consensus 389 ~~~~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 454 (552)
+++++.++... .+.+|++||..+++.+..+.. .+...... ++++++|.++++...++.|++|+..
T Consensus 247 ~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~-ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 247 SYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHD-IVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEE-EEECTTSEEEEEESSSCCEEEEEEE
T ss_pred eecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeE-EEECCCCCEEEEECCCCEEEEEeCC
Confidence 88876443332 345899999999999888742 22233344 6899999888888889999999854
|
| >3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-13 Score=138.04 Aligned_cols=119 Identities=17% Similarity=0.182 Sum_probs=76.9
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|++ |+|+.+..... ......+|||.|||||++.... ....++.++|||||||+||||+||+ ||.
T Consensus 207 ikL~DFG~a~~~~~~~~-~~~~~~~gt~~Y~APE~l~~~~-----------~~~~~~~~~DiwSlGvilyell~G~~Pf~ 274 (410)
T 3v8s_A 207 LKLADFGTCMKMNKEGM-VRCDTAVGTPDYISPEVLKSQG-----------GDGYYGRECDWWSVGVFLYEMLVGDTPFY 274 (410)
T ss_dssp EEECCCTTCEECCTTSE-EECCSCCSCGGGCCHHHHHTTT-----------TTCEEETHHHHHHHHHHHHHHHHSSCTTC
T ss_pred EEEeccceeEeeccCCc-ccccCCcCCccccCHHHhhccC-----------CCcCCCCcceEecchHHHHHHHhCCCCCC
Confidence 5565 66766554432 1245789999999999993211 1123678999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCC--CcchhhHHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGC--RPLLTNVWKC 161 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~--R~~~~~~~~~ 161 (552)
+.+...+ ...+.........+.......++.+++.+||+.+|.+ ||++.++.+.
T Consensus 275 ~~~~~~~-----------------~~~i~~~~~~~~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~H 330 (410)
T 3v8s_A 275 ADSLVGT-----------------YSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRH 330 (410)
T ss_dssp CSSHHHH-----------------HHHHHTHHHHCCCCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTS
T ss_pred CCChhhH-----------------HHHHHhccccccCCCcccccHHHHHHHHHHccChhhhCCCCCHHHHhcC
Confidence 6544311 1111111111111112234556999999999988888 8888776653
|
| >4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.2e-14 Score=133.24 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=79.9
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
.+|+. |+++.+..... .......||+.|||||++. ...+++++|||||||++|+|++ |+ |
T Consensus 144 ~~kl~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~~l~~ll~~g~~p 207 (269)
T 4hcu_A 144 VIKVSDFGMTRFVLDDQY-TSSTGTKFPVKWASPEVFS---------------FSRYSSKSDVWSFGVLMWEVFSEGKIP 207 (269)
T ss_dssp CEEECCTTGGGGBCCHHH-HSTTSTTCCGGGCCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTSCCT
T ss_pred CEEecccccccccccccc-ccccCcccccccCCHHHhc---------------CCCCCchhhhHHHHHHHHHHhcCCCCC
Confidence 35555 45555544332 2355677889999999992 2456789999999999999999 89 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|.......+. ...... ...........+.+++.+||+.+|.+||++.++.+.+.++.
T Consensus 208 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~ 265 (269)
T 4hcu_A 208 YENRSNSEVV---------------------EDISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIA 265 (269)
T ss_dssp TTTCCHHHHH---------------------HHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHH---------------------HHHhcCccCCCCCcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHH
Confidence 9764433110 111000 00111123445889999999999999999999999988765
|
| >3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4e-14 Score=143.83 Aligned_cols=61 Identities=18% Similarity=0.399 Sum_probs=42.5
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+|+...... ..+...||+.|||||++ .| ..++.++|||||||+||||++|+ ||.
T Consensus 203 ~kl~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwSlG~il~ell~g~~pF~ 264 (464)
T 3ttj_A 203 LKILDFGLARTAGTSF---MMTPYVVTRYYRAPEVI------LG---------MGYKENVDIWSVGCIMGEMVRHKILFP 264 (464)
T ss_dssp EEECCCCCC-----CC---CC----CCCTTCCHHHH------TT---------CCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred EEEEEEEeeeecCCCc---ccCCCcccccccCHHHH------cC---------CCCCHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4555 6666555432 36778999999999999 33 56778999999999999999999 996
Q ss_pred HH
Q 008820 91 KE 92 (552)
Q Consensus 91 ~~ 92 (552)
+.
T Consensus 265 g~ 266 (464)
T 3ttj_A 265 GR 266 (464)
T ss_dssp CS
T ss_pred CC
Confidence 54
|
| >2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.8e-14 Score=136.56 Aligned_cols=133 Identities=14% Similarity=0.134 Sum_probs=78.7
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.+|+. |+++...............||+.|||||++. ...+++++|||||||+||||+||+ ||
T Consensus 177 ~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---------------~~~~~~~~Di~slG~il~ell~g~~p~ 241 (321)
T 2qkw_B 177 VPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFI---------------KGRLTEKSDVYSFGVVLFEVLCARSAI 241 (321)
T ss_dssp CEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHH---------------HCBCCTHHHHHHHHHHHHHHHHCCTTC
T ss_pred CEEEeecccccccccccccccccccCCCccccCHHHhc---------------CCCCCcccchHhHHHHHHHHHhCCCcc
Confidence 34555 4555444333323345678999999999982 245678999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHH-HHHHH-HHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMA-WMEKV-TYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
.......+. ....|........ ..... +.............+.+++.+||+.+|.+||++.++.+.+..++
T Consensus 242 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l 314 (321)
T 2qkw_B 242 VQSLPREMV------NLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYAL 314 (321)
T ss_dssp SCSSSSSCC------CHHHHTHHHHTTTCCCSSSSSSCTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred cccCcHHHH------HHHHHhhhccccccHHHhcChhhccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHh
Confidence 654322110 0000000000000 00000 00000000001223889999999999999999999999888775
|
| >1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.6e-14 Score=138.59 Aligned_cols=111 Identities=14% Similarity=0.145 Sum_probs=69.9
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.+|+. |+++.+...... ....+.||+.|||||++ .| ....++.++|||||||+||||+||+ ||
T Consensus 197 ~~kl~DfG~a~~~~~~~~~-~~~~~~gt~~y~aPE~~------~~-------~~~~~~~~~DvwslG~il~ell~g~~pf 262 (355)
T 1vzo_A 197 HVVLTDFGLSKEFVADETE-RAYDFCGTIEYMAPDIV------RG-------GDSGHDKAVDWWSLGVLMYELLTGASPF 262 (355)
T ss_dssp CEEESCSSEEEECCGGGGG-GGCGGGSCCTTCCHHHH------TT-------CC---CTHHHHHHHHHHHHHHHHSSCTT
T ss_pred cEEEeeCCCCeecccCCCC-cccCcccCcCccChhhh------cC-------CCCCCCchhhHHHHHHHHHHHHHCCCCC
Confidence 35565 556655443322 35567899999999999 32 1234678999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcc
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~ 154 (552)
....... ....+..................+.+++.+||+.+|.+||+
T Consensus 263 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~~ 310 (355)
T 1vzo_A 263 TVDGEKN-----------------SQAEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLG 310 (355)
T ss_dssp SCTTSCC-----------------CHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTT
T ss_pred ccCCccc-----------------hHHHHHHHHhccCCCCCcccCHHHHHHHHHHhhhCHHHhcC
Confidence 6533220 00111111111111122223445889999999999999994
|
| >3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.7e-14 Score=136.62 Aligned_cols=131 Identities=15% Similarity=0.189 Sum_probs=75.8
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
+|+. |+++.+...... .+...||+.|||||++ .| ...++.++|||||||+||+|++|+ ||.
T Consensus 158 ~kl~Dfg~a~~~~~~~~~--~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~~ll~g~~pf~ 221 (311)
T 3niz_A 158 LKLADFGLARAFGIPVRS--YTHEVVTLWYRAPDVL------MG--------SKKYSTSVDIWSIGCIFAEMITGKPLFP 221 (311)
T ss_dssp EEECCCTTCEETTSCCC-----CCCCCCTTCCHHHH------TT--------CCSCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred EEEccCcCceecCCCccc--ccCCcccCCcCCHHHh------cC--------CCCCCchHHhHHHHHHHHHHHhCCCCCC
Confidence 4555 556555433222 5667899999999998 22 234678999999999999999999 995
Q ss_pred HHHhh----hhhhccccCCCchhhhhhhhHHHHHHHHH-----HHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELID----YIRCVSTKASDDNIACLGMYMAWMEKVTY-----LLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..... .+........+..|........+...... ...........++.+++.+||+.+|.+||++.++.+
T Consensus 222 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 300 (311)
T 3niz_A 222 GVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN 300 (311)
T ss_dssp CSSTTTHHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred CCChHHHHHHHHHHHCCCChHHhhhhhccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 43222 11111222233333221111111100000 000011123345889999999999999999887655
|
| >3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.1e-14 Score=139.21 Aligned_cols=118 Identities=16% Similarity=0.207 Sum_probs=83.0
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
.+|+. |+++.+.............||+.|||||++ . ...++.++|||||||+||||+| |+ |
T Consensus 229 ~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~------~---------~~~~~~~~DiwslG~il~ellt~g~~p 293 (382)
T 3tt0_A 229 VMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEAL------F---------DRIYTHQSDVWSFGVLLWEIFTLGGSP 293 (382)
T ss_dssp CEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHH------H---------SCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred cEEEcccCcccccccccccccccCCCCCcceeCHHHh------c---------CCCCCchhHHHHHHHHHHHHHhCCCCC
Confidence 45666 666666554433345667889999999999 2 2456789999999999999999 99 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|.......+. ..+... ..........++.+++.+||+.+|.+||++.++.+.+.++.
T Consensus 294 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~ 351 (382)
T 3tt0_A 294 YPGVPVEELF---------------------KLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIV 351 (382)
T ss_dssp STTCCHHHHH---------------------HHHHTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHH---------------------HHHHcCCCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 9764433111 100000 00111223445999999999999999999999999988875
|
| >1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-14 Score=139.46 Aligned_cols=120 Identities=18% Similarity=0.220 Sum_probs=81.5
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
.+|+. |+++.+.............||+.|||||++. ...+++++|||||||+||||+| |+ |
T Consensus 210 ~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~---------------~~~~~~~~Di~slG~il~el~t~g~~p 274 (344)
T 1rjb_A 210 VVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLF---------------EGIYTIKSDVWSYGILLWEIFSLGVNP 274 (344)
T ss_dssp EEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHH---------------HCCCCHHHHHHHHHHHHHHHTTTSCCS
T ss_pred cEEeCCCccCcccccCccceeccCccCccCccCHHHhc---------------cCCCChhHhHHHHHHHHHHHHcCCCCC
Confidence 35555 5566555544333456788999999999982 2456789999999999999998 99 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|......... ....... ...........++.+++.+||+.+|.+||++.++.+.+..++
T Consensus 275 ~~~~~~~~~~----------------~~~~~~~---~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~ 333 (344)
T 1rjb_A 275 YPGIPVDANF----------------YKLIQNG---FKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQL 333 (344)
T ss_dssp STTCCCSHHH----------------HHHHHTT---CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred cccCCcHHHH----------------HHHHhcC---CCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence 9664322000 0000000 000111123445999999999999999999999999988765
|
| >3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.3e-14 Score=137.92 Aligned_cols=123 Identities=14% Similarity=0.097 Sum_probs=73.8
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
.+|+. |+++.+.............||+.|+|||++. ...++.++|||||||++|||++ |+ |
T Consensus 175 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~il~ell~~g~~p 239 (323)
T 3qup_A 175 TVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLA---------------DNLYTVHSDVWAFGVTMWEIMTRGQTP 239 (323)
T ss_dssp CEEECCCCC-----------------CCGGGCCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTSCCT
T ss_pred CEEEeeccccccccccccccccccccCcccccCchhhc---------------CCCCCCccchhhHHHHHHHHHhCCCCC
Confidence 34555 5566655544333355677899999999982 2456789999999999999999 89 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhhc
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~~ 167 (552)
|.......+. ...... ..........++.+++.+||+.+|.+||++.++.+.+.+++.
T Consensus 240 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~ 298 (323)
T 3qup_A 240 YAGIENAEIY---------------------NYLIGGNRLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILG 298 (323)
T ss_dssp TTTCCGGGHH---------------------HHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ccccChHHHH---------------------HHHhcCCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 9764433110 000000 011112234458999999999999999999999999998875
Q ss_pred Cccc
Q 008820 168 KPEF 171 (552)
Q Consensus 168 ~~~~ 171 (552)
.+..
T Consensus 299 ~~~~ 302 (323)
T 3qup_A 299 HLSV 302 (323)
T ss_dssp C---
T ss_pred Hhhh
Confidence 4433
|
| >2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.8e-14 Score=138.11 Aligned_cols=119 Identities=17% Similarity=0.287 Sum_probs=80.5
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
..|+. |+++.+.............||+.|||||++. ...++.++|||||||+||||+| |. |
T Consensus 202 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~il~el~t~g~~p 266 (333)
T 2i1m_A 202 VAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIF---------------DCVYTVQSDVWSYGILLWEIFSLGLNP 266 (333)
T ss_dssp EEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHH---------------HCCCCHHHHHHHHHHHHHHHTTTSCCS
T ss_pred eEEECccccccccccccceeecCCCCCCccccCHHHhc---------------cCCCChHHHHHHHHHHHHHHHcCCCCC
Confidence 34555 5566555444333456678899999999982 2456789999999999999999 88 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|........ ........ ...........+.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 267 ~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~ 325 (333)
T 2i1m_A 267 YPGILVNSK--------------------FYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQA 325 (333)
T ss_dssp STTCCSSHH--------------------HHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CcccchhHH--------------------HHHHHhcCCCCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHH
Confidence 976332200 00000000 00111123445899999999999999999999999887764
|
| >3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-14 Score=145.66 Aligned_cols=117 Identities=14% Similarity=0.219 Sum_probs=68.0
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p 88 (552)
..+|+. |+++.+.... ....+.||+.|||||++... ....++.++|||||||+||+|+||+ |
T Consensus 279 ~~~kl~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~------------~~~~~~~~~DiwslG~il~~lltg~~p 343 (419)
T 3i6u_A 279 CLIKITDFGHSKILGETS---LMRTLCGTPTYLAPEVLVSV------------GTAGYNRAVDCWSLGVILFICLSGYPP 343 (419)
T ss_dssp CCEEECCSSTTTSCC--------------CTTCCTTTTC----------------CTTHHHHHHHHHHHHHHHHHHSSCS
T ss_pred ceEEEeecccceecCCCc---cccccCCCCCccCceeeecC------------CCCCCCchhhhHhHHHHHHHHHHCCCC
Confidence 346676 6676665443 36778999999999998210 1245678999999999999999999 9
Q ss_pred chHHHhh-hhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 89 FTKELID-YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 89 f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
|...... .+. ..+.......+..........+.+++.+||+.+|.+||++.++.+
T Consensus 344 f~~~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 344 FSEHRTQVSLK-----------------DQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 399 (419)
T ss_dssp SCCCSSSCCHH-----------------HHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCCCcchHHHH-----------------HHHhcCCCCCCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 9653211 000 000000000001111223445889999999999999999887655
|
| >3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=6.3e-14 Score=133.53 Aligned_cols=124 Identities=17% Similarity=0.210 Sum_probs=69.8
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++...............||+.|||||++... ....++.++|||||||++|+|++|+ ||.
T Consensus 159 ~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------------~~~~~~~~~Di~slG~il~el~~g~~p~~ 226 (289)
T 3og7_A 159 VKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQ------------DSNPYSFQSDVYAFGIVLYELMTGQLPYS 226 (289)
T ss_dssp EEECCCC------------------CCCTTCCHHHHC----------------CCSCHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred EEEccceeccccccccccccccccCCCccccCchhhccc------------CCCCCCcccchHHHHHHHHHHHHCCCCcc
Confidence 4555 445544433323345677899999999998210 1245667999999999999999999 996
Q ss_pred HHHhh-hhhhccccCCCchhhhhhhhHHHHHHH-HHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 91 KELID-YIRCVSTKASDDNIACLGMYMAWMEKV-TYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 91 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
..... .+. ....... ..............+.+++.+||+.+|.+||++.++.+.+.++.
T Consensus 227 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~ 287 (289)
T 3og7_A 227 NINNRDQII-----------------EMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELA 287 (289)
T ss_dssp SCCCHHHHH-----------------HHHHHTSCCCCTTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred ccchHHHHH-----------------HHhcccccCcchhhccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHh
Confidence 53211 000 0000000 00000011123345899999999999999999999999888765
|
| >3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-14 Score=142.46 Aligned_cols=59 Identities=29% Similarity=0.500 Sum_probs=45.8
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+|+..... .....||+.|||||++ .| ..++.++|||||||+||||+||+ ||.
T Consensus 241 vkL~DFG~a~~~~~~-----~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwSlG~il~elltG~~pf~ 300 (429)
T 3kvw_A 241 IKVIDFGSSCYEHQR-----VYTYIQSRFYRAPEVI------LG---------ARYGMPIDMWSLGCILAELLTGYPLLP 300 (429)
T ss_dssp EEECCCTTCEETTCC-----CCSSCSCGGGCCHHHH------HT---------BCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred eEEeecccceecCCc-----ccccCCCCCccChHHH------hC---------CCCCchHHHHhHHHHHHHHHhCCCCCC
Confidence 4555 555444333 4567999999999999 22 45789999999999999999999 995
Q ss_pred HH
Q 008820 91 KE 92 (552)
Q Consensus 91 ~~ 92 (552)
+.
T Consensus 301 ~~ 302 (429)
T 3kvw_A 301 GE 302 (429)
T ss_dssp CS
T ss_pred CC
Confidence 53
|
| >3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-14 Score=136.25 Aligned_cols=112 Identities=19% Similarity=0.244 Sum_probs=69.9
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+++.+..... .....||+.|+|||++ . ...+++++|||||||+||+|++|+ ||
T Consensus 150 ~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~il~~l~~g~~p~ 211 (283)
T 3bhy_A 150 RIKLIDFGIAHKIEAGNE---FKNIFGTPEFVAPEIV------N---------YEPLGLEADMWSIGVITYILLSGASPF 211 (283)
T ss_dssp CEEECCCTTCEECC-----------CCCGGGCCHHHH------T---------TCCCCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred ceEEEecccceeccCCCc---ccccCCCcCccCccee------c---------CCCCCcchhhhhHHHHHHHHHHCCCCC
Confidence 34555 44555544332 4567899999999998 2 255678999999999999999999 99
Q ss_pred hHHHhhhh-hhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYI-RCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.......+ ..+.... ...+..........+.+++.+||+.+|.+||++.++.+
T Consensus 212 ~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 265 (283)
T 3bhy_A 212 LGETKQETLTNISAVN------------------YDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLE 265 (283)
T ss_dssp CCSSHHHHHHHHHTTC------------------CCCCHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CCcchHHHHHHhHhcc------------------cCCcchhcccCCHHHHHHHHHHccCCHhHCcCHHHHHh
Confidence 65432211 0000000 00001111223345889999999999999999887765
|
| >2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-13 Score=132.96 Aligned_cols=120 Identities=16% Similarity=0.263 Sum_probs=77.5
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++...............||+.|||||++ . +.+++++|||||||+||+|++|+ ||.
T Consensus 172 ~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~------~----------~~~~~~~Dv~slG~il~~l~~g~~p~~ 235 (307)
T 2nru_A 172 AKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEAL------R----------GEITPKSDIYSFGVVLLEIITGLPAVD 235 (307)
T ss_dssp EEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHH------T----------TEECTHHHHHHHHHHHHHHHHCCCSBC
T ss_pred EEEeecccccccccccccccccccCCCcCcCChHHh------c----------CCCCccchhHHHHHHHHHHHHCCCCcc
Confidence 4444 445444433222235567899999999998 2 34678999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHH-------HHHHhh----hhcCccccHHHHHHhhcccCCCCCcchhhHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKV-------TYLLEN----KFGSEFVSLQLMFCQCLNFDPGCRPLLTNVW 159 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~----~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~ 159 (552)
......+. ..+.... ...... ........+.+++.+||+.+|.+||++.++.
T Consensus 236 ~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~ 298 (307)
T 2nru_A 236 EHREPQLL-----------------LDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQ 298 (307)
T ss_dssp TTBSSSBT-----------------THHHHHHHTTSCCHHHHSCSSCSCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred cCcchHHH-----------------HHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCCCcccCcCHHHHH
Confidence 64332110 0000000 000000 0001122488999999999999999999999
Q ss_pred HHHHhhh
Q 008820 160 KCIRELI 166 (552)
Q Consensus 160 ~~l~~~~ 166 (552)
+.+.++.
T Consensus 299 ~~L~~l~ 305 (307)
T 2nru_A 299 QLLQEMT 305 (307)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9888753
|
| >2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-14 Score=146.30 Aligned_cols=107 Identities=15% Similarity=0.224 Sum_probs=73.3
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|++ |+++.+..... .....|||.|||||++ . ...++.++|||||||+||||++|+ ||
T Consensus 324 ~vKL~DFGla~~~~~~~~---~~~~~GT~~Y~APEvl------~---------~~~~~~~~DiwSLGvilyeLltG~~PF 385 (576)
T 2acx_A 324 HIRISDLGLAVHVPEGQT---IKGRVGTVGYMAPEVV------K---------NERYTFSPDWWALGCLLYEMIAGQSPF 385 (576)
T ss_dssp CEEECCCTTCEECCTTCC---EECCCSCGGGCCHHHH------T---------TCEESSHHHHHHHHHHHHHHHHSSCSS
T ss_pred CeEEEecccceecccCcc---ccccCCCccccCHHHH------c---------CCCCCccchHHHHHHHHHHHHhCCCCC
Confidence 35566 67766655432 4567999999999999 2 245778999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcc
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~ 154 (552)
....... ....+...+...+.........++.+++.+||+.+|.+||+
T Consensus 386 ~~~~~~~-----------------~~~~i~~~i~~~~~~~p~~~s~~~~dLI~~lL~~dP~~R~g 433 (576)
T 2acx_A 386 QQRKKKI-----------------KREEVERLVKEVPEEYSERFSPQARSLCSQLLCKDPAERLG 433 (576)
T ss_dssp SCSSSCC-----------------CHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTT
T ss_pred cccccch-----------------hHHHHHHHhhcccccCCccCCHHHHHHHHHhccCCHHHcCC
Confidence 7643210 01112222222222222334556999999999999999994
|
| >3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.4e-14 Score=136.42 Aligned_cols=105 Identities=15% Similarity=0.157 Sum_probs=66.5
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++....... ....+.||+.|||||++ . ...++.++|||||||+||||++|+ ||.
T Consensus 160 ~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwslG~il~el~~g~~pf~ 222 (327)
T 3a62_A 160 VKLTDFGLCKESIHDGT--VTHTFCGTIEYMAPEIL------M---------RSGHNRAVDWWSLGALMYDMLTGAPPFT 222 (327)
T ss_dssp EEECCCSCC------------CTTSSCCTTSCHHHH------T---------TSCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred EEEEeCCcccccccCCc--cccccCCCcCccCHhhC------c---------CCCCCCcccchhHHHHHHHHHHCCCCCC
Confidence 4555 44544332221 35678899999999999 2 245678999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchh
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~ 156 (552)
......+ ...+.............++.+++.+||+.+|.+||+..
T Consensus 223 ~~~~~~~---------------------~~~i~~~~~~~p~~~~~~~~~li~~~L~~dp~~R~~~~ 267 (327)
T 3a62_A 223 GENRKKT---------------------IDKILKCKLNLPPYLTQEARDLLKKLLKRNAASRLGAG 267 (327)
T ss_dssp CSSHHHH---------------------HHHHHHTCCCCCTTSCHHHHHHHHHHSCSCGGGSTTSS
T ss_pred CCCHHHH---------------------HHHHHhCCCCCCCCCCHHHHHHHHHHHhcCHhhccCCC
Confidence 6443311 11111111111122344689999999999999999643
|
| >2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.5e-14 Score=143.25 Aligned_cols=109 Identities=24% Similarity=0.364 Sum_probs=75.1
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+.... ......|||.|+|||++ .| ....++++|||||||+||+|++|+ ||.
T Consensus 155 vkL~DFG~a~~~~~~~---~~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DiwSlGvil~elltG~~Pf~ 217 (476)
T 2y94_A 155 AKIADFGLSNMMSDGE---FLRTSCGSPNYAAPEVI------SG--------RLYAGPEVDIWSSGVILYALLCGTLPFD 217 (476)
T ss_dssp EEECCCSSCEECCTTC---CBCCCCSCSTTCCHHHH------TT--------CCBCSHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred eEEEeccchhhccccc---cccccCCCcCeEChhhc------cC--------CCCCCCcceehhhHHHHHHHhhCCCCCC
Confidence 4555 6666665543 35677899999999999 32 122367999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
......+ ...+.............++.+++.+||+.+|.+||++.++.+
T Consensus 218 ~~~~~~~---------------------~~~i~~~~~~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 218 DDHVPTL---------------------FKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp CSSSHHH---------------------HHHHHTTCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCHHHH---------------------HHHHhcCCcCCCccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence 6543311 111111011111223446899999999999999999988765
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.3e-10 Score=109.94 Aligned_cols=244 Identities=11% Similarity=0.074 Sum_probs=155.1
Q ss_pred EEEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCC----CcE
Q 008820 244 KFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSG----GGI 317 (552)
Q Consensus 244 ~~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d----g~i 317 (552)
.+..+.++...+.+++|+ +++++++..++.|.+||.++++.......+...+.++++++++. ++++...+ +.|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i 114 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGI 114 (333)
T ss_dssp EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEE
T ss_pred eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCc-EEEEeCCCCCCCceE
Confidence 345677788888999998 77777888899999999998877665556778899999998765 66666655 689
Q ss_pred EEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeC------CCcEEEEECCCCceeEEecCCCCCeEEEEEe
Q 008820 318 FVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG------DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC 391 (552)
Q Consensus 318 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~ 391 (552)
.+||.++......+... ... ....-..++++++.+++... .+.|..+|..+++..... .+...+..++|+
T Consensus 115 ~~~d~~~~~~~~~~~~~--~~~-~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~ 190 (333)
T 2dg1_A 115 FAATENGDNLQDIIEDL--STA-YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALS 190 (333)
T ss_dssp EEECTTSCSCEEEECSS--SSC-CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEEC
T ss_pred EEEeCCCCEEEEEEccC--ccC-CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEEC
Confidence 99998765432111111 111 11223467778876666543 355667776555544322 233457889998
Q ss_pred -CC-EEE-EEeCCCcEEEEECCC-CceeEEE-----ecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC-cceeeee
Q 008820 392 -NG-VLY-SGSRDGTIRLWSLSD-HSLLTVL-----EEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND-KFMKSMQ 461 (552)
Q Consensus 392 -~~-~l~-s~~~dg~i~iwd~~~-~~~~~~~-----~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~-~~~~~~~ 461 (552)
++ .++ +.+.++.|.+||+.+ +.....+ ...........++++++|+++++...++.|.+||.. +.+..+.
T Consensus 191 ~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~ 270 (333)
T 2dg1_A 191 TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQIL 270 (333)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEEEE
Confidence 43 454 445688999999964 3333221 111111233347899999988888788999999964 3344444
Q ss_pred cccc------eEEEEEe--cCCEEEEEeCCC------eEEEEecC
Q 008820 462 THKG------SVFAVFL--EGKWLFTGGWDK------TVSVQELA 492 (552)
Q Consensus 462 ~h~~------~v~~v~~--~~~~l~sgs~dg------~i~iwd~~ 492 (552)
.+.. .+.++.+ +++.|+.++.++ .|...++.
T Consensus 271 ~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 271 IPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp CTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred cCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 3332 4566665 666776665553 45555544
|
| >2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.7e-14 Score=136.90 Aligned_cols=118 Identities=14% Similarity=0.231 Sum_probs=80.9
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
.|+. |+++.+.............||+.|||||++. ...+++++|||||||++|||+| |+ ||
T Consensus 189 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~il~el~t~g~~p~ 253 (314)
T 2ivs_A 189 MKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLF---------------DHIYTTQSDVWSFGVLLWEIVTLGGNPY 253 (314)
T ss_dssp EEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHH---------------HCEECHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred EEEccccccccccccccceeccCCCCcccccChhhhc---------------CCCcCchhhHHHHHHHHHHHHhCCCCCC
Confidence 4555 5565554443322345667899999999992 2456789999999999999999 99 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhhc
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~~ 167 (552)
.......+. ..+... ...........+.+++.+||+.+|.+||++.++.+.+.+++.
T Consensus 254 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~ 311 (314)
T 2ivs_A 254 PGIPPERLF---------------------NLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMV 311 (314)
T ss_dssp TTCCGGGHH---------------------HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHH---------------------HHhhcCCcCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 764433211 000000 001111234458999999999999999999999999888763
|
| >3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.7e-15 Score=143.40 Aligned_cols=109 Identities=21% Similarity=0.317 Sum_probs=74.6
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+.... ......|||.|||||++ .| ....++++|||||||+||+|++|+ ||.
T Consensus 147 ~kl~DFG~s~~~~~~~---~~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~~ll~g~~Pf~ 209 (336)
T 3h4j_B 147 VKIADFGLSNIMTDGN---FLKTSCGSPNYAAPEVI------NG--------KLYAGPEVDVWSCGIVLYVMLVGRLPFD 209 (336)
T ss_dssp EEECCSSCTBTTTTSB---TTCCCTTSTTTSCGGGS------CC--------SGGGCHHHHHHHHHHHHHHHHHSSCSSB
T ss_pred EEEEEeccceeccCCc---ccccccCCcCcCCHHHH------cC--------CCCCCCccchhHHHHHHHHHHhCCCCCC
Confidence 4555 5666655543 35678899999999998 32 122367999999999999999999 998
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
......+.. ..... . .........++.+++.+||+.+|.+||++.++.+
T Consensus 210 ~~~~~~~~~-~i~~~-----~---------------~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~ 258 (336)
T 3h4j_B 210 DEFIPNLFK-KVNSC-----V---------------YVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRR 258 (336)
T ss_dssp CSSSTTCBC-CCCSS-----C---------------CCCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred CccHHHHHH-HHHcC-----C---------------CCCcccCCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence 755443210 00000 0 0001112345889999999999999999887655
|
| >3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-14 Score=137.93 Aligned_cols=115 Identities=18% Similarity=0.259 Sum_probs=73.4
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+.............||+.|||||++ .+ ....+.++|||||||+||+|++|+ ||.
T Consensus 144 ~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~~ll~g~~pf~ 209 (323)
T 3tki_A 144 LKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL------KR--------REFHAEPVDVWSCGIVLTAMLAGELPWD 209 (323)
T ss_dssp EEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHH------HC--------SSBCHHHHHHHHHHHHHHHHHHSSCSCS
T ss_pred EEEEEeeccceeccCCcccccCCCccCcCccCcHHh------cc--------CCCCCCcccHHHHHHHHHHHHhCCCCCC
Confidence 4555 556555433333346678999999999999 22 122357899999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
........ ...+.... ............+.+++.+||+.+|.+||++.++.+
T Consensus 210 ~~~~~~~~----------------~~~~~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~ 261 (323)
T 3tki_A 210 QPSDSCQE----------------YSDWKEKK--TYLNPWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (323)
T ss_dssp SSCTTSHH----------------HHHHHTTC--TTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCchHHHH----------------HHHHhccc--ccCCccccCCHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 53322000 00000000 000111223445889999999999999999877654
|
| >3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-14 Score=141.18 Aligned_cols=59 Identities=22% Similarity=0.407 Sum_probs=45.8
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+|+..... .....||+.|||||++ .+ ..++.++|||||||+||+|+||+ ||
T Consensus 200 ~~kl~DFG~a~~~~~~-----~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~ell~g~~pf 259 (360)
T 3llt_A 200 GIKLIDFGCATFKSDY-----HGSIINTRQYRAPEVI------LN---------LGWDVSSDMWSFGCVLAELYTGSLLF 259 (360)
T ss_dssp CEEECCCTTCEETTSC-----CCSCCSCGGGCCHHHH------TT---------CCCCTTHHHHHHHHHHHHHHHSSCSC
T ss_pred CEEEEeccCceecCCC-----CcCccCcccccCcHHH------cC---------CCCCCccchHHHHHHHHHHHHCCCCC
Confidence 34555 555443332 4578899999999999 33 56789999999999999999999 99
Q ss_pred hH
Q 008820 90 TK 91 (552)
Q Consensus 90 ~~ 91 (552)
..
T Consensus 260 ~~ 261 (360)
T 3llt_A 260 RT 261 (360)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.2e-14 Score=138.88 Aligned_cols=109 Identities=9% Similarity=0.148 Sum_probs=71.7
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
+|++ |+++.+..... .+.+.||+.|||||++ .+ .....++.++|||||||+||||++|+ ||.
T Consensus 154 vkL~DFG~a~~~~~~~~---~~~~~gt~~Y~aPE~~------~~------~~~~~~~~~~DiwSlG~il~elltG~~Pf~ 218 (384)
T 4fr4_A 154 VHITDFNIAAMLPRETQ---ITTMAGTKPYMAPEMF------SS------RKGAGYSFAVDWWSLGVTAYELLRGRRPYH 218 (384)
T ss_dssp EEECCCTTCEECCTTCC---BCCCCSCGGGCCGGGT------CC------CSSCCBCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred EEEeccceeeeccCCCc---eeccCCCccccCCeee------cc------CCCCCCCccceeechHHHHHHHHhCCCCCC
Confidence 4555 66766554432 5778999999999998 21 01234678999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcch
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~ 155 (552)
....... .....................+.+++.+||+.+|.+||+.
T Consensus 219 ~~~~~~~------------------~~~~~~~~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~s~ 265 (384)
T 4fr4_A 219 IRSSTSS------------------KEIVHTFETTVVTYPSAWSQEMVSLLKKLLEPNPDQRFSQ 265 (384)
T ss_dssp CCTTSCH------------------HHHHHHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSCCS
T ss_pred CCCCccH------------------HHHHHHHhhcccCCCCcCCHHHHHHHHHHhcCCHhHhccc
Confidence 4322200 0111111111111122234569999999999999999984
|
| >4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-13 Score=138.28 Aligned_cols=149 Identities=12% Similarity=0.156 Sum_probs=83.2
Q ss_pred hhhhhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhC
Q 008820 9 VTKSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG 86 (552)
Q Consensus 9 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg 86 (552)
+.....|+. |+++.+..... .....||+.|||||++....... .....++.++|||||||+||||+||
T Consensus 150 ~~~~~~kL~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~-------~~~~~~~~~~DiwSlG~il~el~tg 219 (396)
T 4eut_A 150 DGQSVYKLTDFGAARELEDDEQ---FVSLYGTEEYLHPDMYERAVLRK-------DHQKKYGATVDLWSIGVTFYHAATG 219 (396)
T ss_dssp TSCEEEEECCGGGCEECCCGGG---SSCSSSCCTTCCHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCceeEEEecCCCceEccCCCc---cccccCCccccCHHHhhcccccc-------ccccCCCcHHHHHHHHHHHHHHHHC
Confidence 444456676 66766655443 45678999999999984321100 0013566899999999999999999
Q ss_pred C-CchHHHhh-----hhhhccccCCCchhhhhhh----hHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchh
Q 008820 87 E-QFTKELID-----YIRCVSTKASDDNIACLGM----YMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT 156 (552)
Q Consensus 87 ~-pf~~~~~~-----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~ 156 (552)
+ ||...... .+..+.....+..|..... ...|....+ ............+.+++.+||+.+|.+||++.
T Consensus 220 ~~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~ 298 (396)
T 4eut_A 220 SLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMP-VSCSLSRGLQVLLTPVLANILEADQEKCWGFD 298 (396)
T ss_dssp SCSEECTTCTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCC-TTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHH
T ss_pred CCCCCCCCcccchHHHHHHHhcCCCcccchhheeccCCCcccCccCC-cccccchHHHhhchHHHHHhhccChhhhccHH
Confidence 9 99642211 0100000000000000000 000000000 00000000112378999999999999999999
Q ss_pred hHHHHHHhhhcC
Q 008820 157 NVWKCIRELIIK 168 (552)
Q Consensus 157 ~~~~~l~~~~~~ 168 (552)
++.+.+..++..
T Consensus 299 e~l~~l~~il~~ 310 (396)
T 4eut_A 299 QFFAETSDILHR 310 (396)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhhc
Confidence 999988887644
|
| >3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.2e-14 Score=137.89 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=56.9
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+++....... ......||+.|||||++ . ...+++++|||||||+||+|++|+ ||
T Consensus 147 ~~kl~Dfg~a~~~~~~~~--~~~~~~~t~~y~aPE~~------~---------~~~~~~~~DiwslG~il~~ll~g~~pf 209 (325)
T 3kn6_A 147 EIKIIDFGFARLKPPDNQ--PLKTPCFTLHYAAPELL------N---------QNGYDESCDLWSLGVILYTMLSGQVPF 209 (325)
T ss_dssp EEEECCCTTCEECCC---------------------------------------CCCCHHHHHHHHHHHHHHHHHSSCTT
T ss_pred cEEEeccccceecCCCCC--cccccCCCcCccCHHHh------c---------CCCCCCccchHHHHHHHHHHHhCCCCC
Confidence 45666 55655544332 25677899999999998 2 245678999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHH----HHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVT----YLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
......... . ........+. ..+...+.....++.+++.+||+.+|.+||++.++.+
T Consensus 210 ~~~~~~~~~----~----------~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 270 (325)
T 3kn6_A 210 QSHDRSLTC----T----------SAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY 270 (325)
T ss_dssp C-------C----C----------CHHHHHHHHTTTCCCCCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred CCCcccccc----c----------cHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence 764322000 0 0000111100 0011111223446899999999999999999887644
|
| >2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=9.6e-14 Score=134.11 Aligned_cols=128 Identities=16% Similarity=0.168 Sum_probs=74.4
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|++ |+++.+..... ..+...||+.|||||++ .| ...+++++|||||||+||||+||+ ||.
T Consensus 147 ~kl~Dfg~~~~~~~~~~--~~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~el~~g~~pf~ 210 (317)
T 2pmi_A 147 LKLGDFGLARAFGIPVN--TFSSEVVTLWYRAPDVL------MG--------SRTYSTSIDIWSCGCILAEMITGKPLFP 210 (317)
T ss_dssp EEECCCSSCEETTSCCC--CCCCCCSCCTTCCHHHH------TT--------CCCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred EEECcCccceecCCCcc--cCCCCcccccccCchHh------hC--------CCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence 4555 55555543322 25567899999999998 22 234678999999999999999999 995
Q ss_pred HHHhhh----hhhccccCCCchhhhhhhh------------HHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcc
Q 008820 91 KELIDY----IRCVSTKASDDNIACLGMY------------MAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (552)
Q Consensus 91 ~~~~~~----~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~ 154 (552)
+..... +....+......|...... ..+... ...........++.+++.+||+.+|.+||+
T Consensus 211 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt 287 (317)
T 2pmi_A 211 GTNDEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQV---LQPHTKEPLDGNLMDFLHGLLQLNPDMRLS 287 (317)
T ss_dssp CSSHHHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCCCCSHHH---HGGGCSSCCCHHHHHHHHHHSCSSGGGSCC
T ss_pred CCChHHHHHHHHHHhCCCChhHhhhhhhhhhcccccccccchhHHHh---hcccccccCCHHHHHHHHHHCCCCcccCCC
Confidence 533221 1111111111111100000 000000 000111123446899999999999999999
Q ss_pred hhhHHH
Q 008820 155 LTNVWK 160 (552)
Q Consensus 155 ~~~~~~ 160 (552)
+.++.+
T Consensus 288 ~~e~l~ 293 (317)
T 2pmi_A 288 AKQALH 293 (317)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 877554
|
| >3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.9e-14 Score=132.34 Aligned_cols=102 Identities=20% Similarity=0.228 Sum_probs=69.8
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....||+.|||||++... .....+.++|||||||++|||++|+ ||.......+.
T Consensus 165 ~~~~~~t~~y~aPE~~~~~------------~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~------------ 220 (271)
T 3kmu_A 165 SPGRMYAPAWVAPEALQKK------------PEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIG------------ 220 (271)
T ss_dssp CTTCBSCGGGSCHHHHHSC------------GGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHH------------
T ss_pred ccCccCCccccChhhhccC------------CCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHH------------
Confidence 3456899999999999311 0122334799999999999999999 99754333110
Q ss_pred hhhhhHHHHHHHHHH--HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 111 CLGMYMAWMEKVTYL--LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
...... ...........+.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 221 ---------~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~ 269 (271)
T 3kmu_A 221 ---------MKVALEGLRPTIPPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQ 269 (271)
T ss_dssp ---------HHHHHSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred ---------HHHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence 000000 00111123445899999999999999999999999888764
|
| >3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.2e-14 Score=136.43 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=77.1
Q ss_pred hhhcc--cccccccccch-hhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-
Q 008820 13 VAKVG--CVGSRICDKEV-GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~- 87 (552)
..|+. |+++.+..... ........||+.|||||++. ...++.++|||||||+||||++ |+
T Consensus 189 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~---------------~~~~~~~~Di~slG~il~ell~~g~~ 253 (325)
T 3kul_A 189 VCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIA---------------FRTFSSASDVWSFGVVMWEVLAYGER 253 (325)
T ss_dssp CEEECCCSSCEECC----CCEECC---CCGGGSCHHHHH---------------HCEECHHHHHHHHHHHHHHHHTTSCC
T ss_pred CEEECCCCcccccccCccceeeccCCCCcccccCHhHhc---------------CCCCCcHHHHHHHHHHHHHHHcCCCC
Confidence 34555 55665544322 12244566789999999992 2456789999999999999999 99
Q ss_pred CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
||.......+. ..+... ...........+.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 254 p~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~ 312 (325)
T 3kul_A 254 PYWNMTNRDVI---------------------SSVEEGYRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALI 312 (325)
T ss_dssp TTTTSCHHHHH---------------------HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CcccCCHHHHH---------------------HHHHcCCCCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 99654333111 000000 00111123445899999999999999999999999998876
Q ss_pred c
Q 008820 167 I 167 (552)
Q Consensus 167 ~ 167 (552)
.
T Consensus 313 ~ 313 (325)
T 3kul_A 313 R 313 (325)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.40 E-value=7.4e-11 Score=114.55 Aligned_cols=262 Identities=11% Similarity=0.070 Sum_probs=164.4
Q ss_pred cceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcc
Q 008820 253 DCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP 330 (552)
Q Consensus 253 ~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 330 (552)
..|.+++|+ +..++..+.++.++.| .++....+..+...+.+++|++++. +++++..++.|.+||..++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEE
Confidence 346667777 5556666778899999 4567777888888889999998665 777888899999999876542221
Q ss_pred ccccccCCCceeeeEEEEeeCCCEEEEeeCC----CcEEEEECCCCceeEEec--CCCCCeEEEEEe-CCEEEEEeC---
Q 008820 331 LKKWNEEKDWRYSGIHALTTSGRYLYTGSGD----RTIKAWSLLDGTLSCTMS--GHKSAVSTLAVC-NGVLYSGSR--- 400 (552)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d----g~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~-~~~l~s~~~--- 400 (552)
.. .... . ....+++++++++++...+ +.|.+||..+++....+. .+...+.+++++ ++.++.++.
T Consensus 82 ~~---~~~~-~-~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 156 (333)
T 2dg1_A 82 FV---SHKA-N-PAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY 156 (333)
T ss_dssp EE---CSSS-S-EEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB
T ss_pred ee---CCCC-C-cceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccc
Confidence 11 1111 1 1234667788877776666 689999998877654433 245578999998 554444443
Q ss_pred ----CCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEE-ECCCcEEEEeCCc---ceeee--------eccc
Q 008820 401 ----DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS-HESGSIKVWRNDK---FMKSM--------QTHK 464 (552)
Q Consensus 401 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg~i~iwd~~~---~~~~~--------~~h~ 464 (552)
.+.|..+|..+++........ ..... ++++++++.++++ +.++.|++||... ....+ .++
T Consensus 157 ~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~-i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~- 232 (333)
T 2dg1_A 157 STNPLGGVYYVSPDFRTVTPIIQNI--SVANG-IALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH- 232 (333)
T ss_dssp TTBCCEEEEEECTTSCCEEEEEEEE--SSEEE-EEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-
T ss_pred ccCCCceEEEEeCCCCEEEEeecCC--Ccccc-eEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-
Confidence 356777776655543322211 22333 6899999866554 4578999999632 22211 112
Q ss_pred ceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCC-cccCcceEEEEEeC--CeEEEEeCC
Q 008820 465 GSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGA-IPCGSVITALLYWQ--GKLFVGCAD 528 (552)
Q Consensus 465 ~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~--~~l~s~s~D 528 (552)
..+..+.+ +|+++++...++.|.+||..+. ....+..... ..+...+.+++|++ +.|++++.+
T Consensus 233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~-~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY-PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp SEEEEEEEBTTCCEEEEEETTTEEEEECTTSC-EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEECCCCC-EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 34555665 7888777777899999998543 3333322110 00011477888874 357666655
|
| >2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.4e-14 Score=134.14 Aligned_cols=112 Identities=20% Similarity=0.314 Sum_probs=73.1
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+..... ..+...||+.|||||++ .+ ......+.++|||||||+||+|++|+ ||.
T Consensus 176 ~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~------~~------~~~~~~~~~~Di~slG~~l~~l~~g~~pf~ 241 (298)
T 2zv2_A 176 IKIADFGVSNEFKGSDA--LLSNTVGTPAFMAPESL------SE------TRKIFSGKALDVWAMGVTLYCFVFGQCPFM 241 (298)
T ss_dssp EEECCCTTCEECSSSSC--EECCCCSCGGGCCGGGC------CT------TCCCEESHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred EEEecCCCccccccccc--cccCCcCCccccChhhh------cc------CCCCCCCchhhhHhHHHHHHHHHHCCCCCC
Confidence 4555 55665554432 25677899999999998 22 00112367899999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHH--hhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLL--ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
......+ ...+.... .+........+.+++.+||+.+|.+||++.++.+
T Consensus 242 ~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 242 DERIMCL---------------------HSKIKSQALEFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp CSSHHHH---------------------HHHHHHCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred CccHHHH---------------------HHHHhcccCCCCCccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence 5433211 01110000 0111123445999999999999999999887643
|
| >2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.3e-14 Score=137.27 Aligned_cols=119 Identities=18% Similarity=0.159 Sum_probs=77.3
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
..|+. |+++.+.............||+.|||||++. ...+++++|||||||+||+|+| |+ |
T Consensus 181 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~il~ellt~g~~p 245 (327)
T 2yfx_A 181 VAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFM---------------EGIFTSKTDTWSFGVLLWEIFSLGYMP 245 (327)
T ss_dssp CEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred eEEECccccccccccccccccCCCcCCCcceeCHhHhc---------------CCCCCchhhHHHHHHHHHHHHcCCCCC
Confidence 45555 3444443333222345678899999999982 2456789999999999999998 98 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhhc
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~~ 167 (552)
|.......+. ..+... ...........+.+++.+||+.+|.+||++.++.+.+..+..
T Consensus 246 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~ 304 (327)
T 2yfx_A 246 YPSKSNQEVL---------------------EFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQ 304 (327)
T ss_dssp STTCCHHHHH---------------------HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHH---------------------HHHhcCCCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhc
Confidence 9654332110 000000 000111233458899999999999999999999998877653
|
| >2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.9e-14 Score=136.93 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=65.4
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....||+.|||||++...... ...++.++|||||||+||||++|+ ||........ .|.
T Consensus 178 ~~~~~gt~~y~aPE~~~~~~~~----------~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~----------~~~ 237 (316)
T 2ac3_A 178 LLTPCGSAEYMAPEVVEAFSEE----------ASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDC----------GWD 237 (316)
T ss_dssp ----CCSGGGCCHHHHHHTSHH----------HHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCS----------CC-
T ss_pred cccccCCcCccChHHhhccccc----------ccCCCcccccHhHHHHHHHHHHCCCCCcccccccc----------ccc
Confidence 4456799999999999431110 134568999999999999999999 9966432100 010
Q ss_pred hhhh----hHHHHHHHH----HHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 111 CLGM----YMAWMEKVT----YLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 111 ~~~~----~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.... .......+. ..+..........+.+++.+||+.+|.+||++.++.+
T Consensus 238 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 295 (316)
T 2ac3_A 238 RGEACPACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQ 295 (316)
T ss_dssp ---CCHHHHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred ccccchhHHHHHHHHHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence 0000 001111111 0111112234456999999999999999999888765
|
| >2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-14 Score=137.01 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=73.9
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p 88 (552)
...|++ |+++..... ......||+.|+|||++ . ...+++++|||||||++|+|++|+ |
T Consensus 146 ~~~kl~Dfg~~~~~~~~----~~~~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~il~~l~~g~~p 206 (304)
T 2jam_A 146 SKIMITDFGLSKMEQNG----IMSTACGTPGYVAPEVL------A---------QKPYSKAVDCWSIGVITYILLCGYPP 206 (304)
T ss_dssp CCEEBCSCSTTCCCCCB----TTHHHHSCCCBCCTTTB------S---------SCSCCHHHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEEccCCcceecCCC----ccccccCCCCccChHHh------c---------cCCCCchhhHHHHHHHHHHHHHCCCC
Confidence 345555 445443332 24567899999999998 2 255678999999999999999999 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
|.......+. ..+.......+..........+.+++.+||+.+|.+||++.++.+
T Consensus 207 f~~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 207 FYEETESKLF-----------------EKIKEGYYEFESPFWDDISESAKDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp TTTSCHHHHH-----------------HHHHHCCCCCCTTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred CCCCCHHHHH-----------------HHHHcCCCCCCccccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 9664332110 000000000011111223456899999999999999999987665
|
| >1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=5.5e-14 Score=137.53 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=78.7
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
..|+. |+++.+.............||+.|||||++. ...+++++|||||||+||||+| |+ |
T Consensus 212 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~---------------~~~~~~~~Di~slG~il~el~t~g~~p 276 (343)
T 1luf_A 212 VVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIF---------------YNRYTTESDVWAYGVVLWEIFSYGLQP 276 (343)
T ss_dssp CEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTTCCT
T ss_pred eEEEeecCCCcccccCccccccCCCcccceecChhhhc---------------cCCcCcccccHHHHHHHHHHHhcCCCc
Confidence 34555 4555554443323356678999999999982 2456789999999999999999 99 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|.......+. ..+... ...........+.+++.+||+.+|.+||++.++.+.+.++.
T Consensus 277 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~ 334 (343)
T 1luf_A 277 YYGMAHEEVI---------------------YYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMC 334 (343)
T ss_dssp TTTSCHHHHH---------------------HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred CCCCChHHHH---------------------HHHhCCCcCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHH
Confidence 9764333111 000000 00111123445899999999999999999999999988875
|
| >3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ... | Back alignment and structure |
|---|
Probab=99.39 E-value=9.1e-14 Score=131.70 Aligned_cols=94 Identities=17% Similarity=0.302 Sum_probs=65.3
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....||+.|+|||++ .+ ...++++|||||||+||+|++|+ ||.......
T Consensus 164 ~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-------------- 214 (279)
T 3fdn_A 164 RTDLCGTLDYLPPEMI------EG---------RMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQE-------------- 214 (279)
T ss_dssp ----CCCCTTCCHHHH------TT---------CCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH--------------
T ss_pred ccccCCCCCccCHhHh------cc---------CCCCccchhHhHHHHHHHHHHCCCCCCCCcHHH--------------
Confidence 4567899999999998 32 45678999999999999999999 997643331
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
...................+.+++.+||+.+|.+||++.++.+.
T Consensus 215 -------~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h 258 (279)
T 3fdn_A 215 -------TYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEH 258 (279)
T ss_dssp -------HHHHHHHTCCCCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred -------HHHHHHhCCCCCCCcCCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence 11111111111112234458999999999999999999887764
|
| >1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A | Back alignment and structure |
|---|
Probab=99.39 E-value=5.4e-14 Score=133.93 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=63.4
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhh----hhhhccccCCC
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELID----YIRCVSTKASD 106 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~----~~~~~~~~~~~ 106 (552)
.+...||+.|||||++ .+ ...+++++|||||||+||||++|+ ||...... .+.........
T Consensus 157 ~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~ 222 (288)
T 1ob3_A 157 YTHEIVTLWYRAPDVL------MG--------SKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNS 222 (288)
T ss_dssp -----CCCTTCCHHHH------TT--------CCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCT
T ss_pred cccccccccccCchhe------eC--------CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCCh
Confidence 4566899999999998 22 234678999999999999999999 99543221 11100011111
Q ss_pred chhhhhhhhHHHHHHHH---HH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 107 DNIACLGMYMAWMEKVT---YL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 107 ~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..|.............. .. ..........++.+++.+||+.+|.+||++.++.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 280 (288)
T 1ob3_A 223 KNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280 (288)
T ss_dssp TTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred hhchhhhcccccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 11110000000000000 00 00111123445889999999999999999887654
|
| >3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-13 Score=131.91 Aligned_cols=106 Identities=16% Similarity=0.103 Sum_probs=69.5
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.+|+. |+++.+..... .....||+.|||||++ . +.+++++|||||||+||||++|. ||
T Consensus 195 ~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~------~----------~~~~~~~DiwslG~il~el~~g~~~~ 255 (311)
T 3p1a_A 195 RCKLGDFGLLVELGTAGA---GEVQEGDPRYMAPELL------Q----------GSYGTAADVFSLGLTILEVACNMELP 255 (311)
T ss_dssp CEEECCCTTCEECC---------CCCCCGGGCCGGGG------G----------TCCSTHHHHHHHHHHHHHHHHTCCCC
T ss_pred CEEEccceeeeecccCCC---CcccCCCccccCHhHh------c----------CCCCchhhHHHHHHHHHHHHhCCCCC
Confidence 46666 55555544332 4567799999999998 2 35678999999999999999997 55
Q ss_pred -hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 -TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.......+. ... . +.........++.+++.+||+.+|.+||++.++.+
T Consensus 256 ~~~~~~~~~~--~~~-~--------------------~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 256 HGGEGWQQLR--QGY-L--------------------PPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLA 304 (311)
T ss_dssp SSHHHHHHHT--TTC-C--------------------CHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CCccHHHHHh--ccC-C--------------------CcccccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence 443333221 000 0 00011123445899999999999999999887665
|
| >4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=6.8e-14 Score=140.46 Aligned_cols=120 Identities=13% Similarity=0.135 Sum_probs=76.0
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.+|++ |+|+.+..... ...+..+|||.|||||++..... ....++.++|||||||+||||++|+ ||
T Consensus 213 ~vkL~DFGla~~~~~~~~-~~~~~~~GT~~Y~APE~l~~~~~----------~~~~~~~~~DvwSlGvil~elltG~~Pf 281 (437)
T 4aw2_A 213 HIRLADFGSCLKLMEDGT-VQSSVAVGTPDYISPEILQAMEG----------GKGRYGPECDWWSLGVCMYEMLYGETPF 281 (437)
T ss_dssp CEEECCCTTCEECCTTSC-EECCSCCSCGGGCCHHHHHHHHT----------SCCEECTHHHHHHHHHHHHHHHHSSCTT
T ss_pred CEEEcchhhhhhcccCCC-cccccccCCcCeeChHHHhhccc----------CCCCCCCcCeeHHHHHHHHHHHhCCCCC
Confidence 45666 66666544332 12456799999999999942211 1345778999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCC--CcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGC--RPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~--R~~~~~~~~ 160 (552)
.+.+...+ +..+........ .........++.+++.+||+.+|++ |+++.++.+
T Consensus 282 ~~~~~~~~-----------------~~~i~~~~~~~~~p~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~ 338 (437)
T 4aw2_A 282 YAESLVET-----------------YGKIMNHKERFQFPTQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKK 338 (437)
T ss_dssp CCSSHHHH-----------------HHHHHTHHHHCCCCSSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred CCCChhHH-----------------HHhhhhccccccCCcccccCCHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence 76443311 111111100111 0111224556999999999988877 888776554
|
| >1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-13 Score=135.69 Aligned_cols=60 Identities=27% Similarity=0.594 Sum_probs=45.4
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+++.+... .+...||+.|||||++ .+ ..+++++|||||||+||||+||+ ||
T Consensus 176 ~~kl~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~~g~~pf 235 (373)
T 1q8y_A 176 QIKIADLGNACWYDEH-----YTNSIQTREYRSPEVL------LG---------APWGCGADIWSTACLIFELITGDFLF 235 (373)
T ss_dssp EEEECCCTTCEETTBC-----CCSCCSCGGGCCHHHH------HT---------CCCCTHHHHHHHHHHHHHHHHSSCCC
T ss_pred eEEEcccccccccCCC-----CCCCCCCccccCcHHH------hC---------CCCCchHhHHHHHHHHHHHHhCCCCC
Confidence 45666 556555443 4567899999999999 22 45678999999999999999999 99
Q ss_pred hHH
Q 008820 90 TKE 92 (552)
Q Consensus 90 ~~~ 92 (552)
...
T Consensus 236 ~~~ 238 (373)
T 1q8y_A 236 EPD 238 (373)
T ss_dssp ---
T ss_pred CCC
Confidence 754
|
| >3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=7.4e-14 Score=135.66 Aligned_cols=132 Identities=17% Similarity=0.139 Sum_probs=68.3
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+++.+..... ......||+.|||||++ .+ ...+++++|||||||+||||++|+ ||
T Consensus 175 ~~kl~Dfg~a~~~~~~~~--~~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~ell~g~~pf 238 (329)
T 3gbz_A 175 VLKIGDFGLARAFGIPIR--QFTHEIITLWYRPPEIL------LG--------SRHYSTSVDIWSIACIWAEMLMKTPLF 238 (329)
T ss_dssp EEEECCTTHHHHHC-------------CCTTCCHHHH------TT--------CCCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred eEEECcCCCccccCCccc--ccCCCcCCccccCHHHh------cC--------CCCCCcHHHHHHHHHHHHHHHHCCCCc
Confidence 45666 45555443322 25667899999999999 22 234678999999999999999999 99
Q ss_pred hHHHhhhh----hhccccCCCchhhhhhhhHHHHHHHHH-----HHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYI----RCVSTKASDDNIACLGMYMAWMEKVTY-----LLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
........ ...........|........+....+. ...........++.+++.+||+.+|.+||++.++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 318 (329)
T 3gbz_A 239 PGDSEIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE 318 (329)
T ss_dssp CCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCHHHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence 55332211 100000011111000000000000000 000000112345889999999999999999887655
|
| >2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.6e-14 Score=136.84 Aligned_cols=60 Identities=22% Similarity=0.412 Sum_probs=46.3
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p 88 (552)
...|+. |+++..... .....||+.|||||++ . ...++.++|||||||+||||++|+ |
T Consensus 179 ~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~------~---------~~~~~~~~Di~slG~il~el~~g~~p 238 (355)
T 2eu9_A 179 TSIRVADFGSATFDHEH-----HTTIVATRHYRPPEVI------L---------ELGWAQPCDVWSIGCILFEYYRGFTL 238 (355)
T ss_dssp CCEEECCCTTCEETTSC-----CCSSCSCGGGCCHHHH------T---------TCCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred CcEEEeecCcccccccc-----ccCCcCCCcccCCeee------e---------cCCCCCccchHHHHHHHHHHHhCCCC
Confidence 345666 455443333 4567899999999999 2 356778999999999999999999 9
Q ss_pred chH
Q 008820 89 FTK 91 (552)
Q Consensus 89 f~~ 91 (552)
|..
T Consensus 239 f~~ 241 (355)
T 2eu9_A 239 FQT 241 (355)
T ss_dssp CCC
T ss_pred CCC
Confidence 954
|
| >3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=9e-14 Score=133.31 Aligned_cols=128 Identities=13% Similarity=0.170 Sum_probs=74.8
Q ss_pred hhhcc--cccccccccchh--hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhC--
Q 008820 13 VAKVG--CVGSRICDKEVG--LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG-- 86 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~--~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg-- 86 (552)
.+|+. |+++.+...... .......||+.|||||++ .+.. ......+++++|||||||+||||+||
T Consensus 151 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~~~---~~~~~~~~~~~DvwslG~il~el~tg~~ 221 (301)
T 3q4u_A 151 QCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVL------DETI---QVDCFDSYKRVDIWAFGLVLWEVARRMV 221 (301)
T ss_dssp CEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHH------TTCC---CTTCHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred CEEEeeCCCeeecccccccccccccccccccceeChhhh------cCcC---CCCcccCCchhhHHHHHHHHHHHHhhhc
Confidence 35565 555544433221 113456899999999999 2200 00001455799999999999999999
Q ss_pred --------C-CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHH------HHHHhh-hhcCccccHHHHHHhhcccCCC
Q 008820 87 --------E-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKV------TYLLEN-KFGSEFVSLQLMFCQCLNFDPG 150 (552)
Q Consensus 87 --------~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~l~~~~~~~l~~~p~ 150 (552)
+ ||......... ........ +..+.. ........+.+++.+||+.+|.
T Consensus 222 ~~~~~~~~~~pf~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~ 285 (301)
T 3q4u_A 222 SNGIVEDYKPPFYDVVPNDPS----------------FEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPS 285 (301)
T ss_dssp BTTBCCCCCCTTTTTSCSSCC----------------HHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGG
T ss_pred CccccccccccccccCCCCcc----------------hhhhhHHHhccCCCCCCChhhccCccHHHHHHHHHHHhhcChh
Confidence 7 87442211000 00000000 000000 0000123488999999999999
Q ss_pred CCcchhhHHHHHHhh
Q 008820 151 CRPLLTNVWKCIREL 165 (552)
Q Consensus 151 ~R~~~~~~~~~l~~~ 165 (552)
+||++.++.+.+.++
T Consensus 286 ~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 286 ARLTALRIKKTLTKI 300 (301)
T ss_dssp GSCCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHhcc
Confidence 999999999987754
|
| >1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=7.2e-14 Score=132.57 Aligned_cols=116 Identities=17% Similarity=0.200 Sum_probs=69.9
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
.|+. |+++.+...... ......||+.|||||++. ...+++++|||||||+||||++ |+ ||
T Consensus 155 ~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~~l~ell~~g~~pf 218 (281)
T 1mp8_A 155 VKLGDFGLSRYMEDSTYY-KASKGKLPIKWMAPESIN---------------FRRFTSASDVWMFGVCMWEILMHGVKPF 218 (281)
T ss_dssp EEECC--------------------CCGGGCCHHHHH---------------HCCCSHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred EEECccccccccCccccc-ccccCCCcccccChhhcc---------------cCCCCCccCchHHHHHHHHHHhcCCCCC
Confidence 4555 555555443321 244567889999999982 2456789999999999999997 99 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
.......+. ..+... ...........+.+++.+||+.+|.+||++.++.+.+..++
T Consensus 219 ~~~~~~~~~---------------------~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~ 275 (281)
T 1mp8_A 219 QGVKNNDVI---------------------GRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTIL 275 (281)
T ss_dssp TTCCGGGHH---------------------HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CcCCHHHHH---------------------HHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 764332110 000000 00111223445899999999999999999999999888775
|
| >3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-13 Score=130.25 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=79.0
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
..|+. |+++.+..... .......||+.|+|||++. ...+++++|||||||++|+|++ |+ |
T Consensus 142 ~~kl~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~il~~l~~~g~~p 205 (267)
T 3t9t_A 142 VIKVSDFGMTRFVLDDQY-TSSTGTKFPVKWASPEVFS---------------FSRYSSKSDVWSFGVLMWEVFSEGKIP 205 (267)
T ss_dssp CEEECCTTGGGGBCCHHH-HSTTSTTCCGGGCCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTSCCT
T ss_pred CEEEcccccccccccccc-cccccccccccccChhhhc---------------CCCccchhchhhhHHHHHHHhccCCCC
Confidence 35555 44555443322 2345677899999999992 2456789999999999999999 89 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|.......+. ..+... ...........+.+++.+||+.+|.+||++.++.+.+.++.
T Consensus 206 ~~~~~~~~~~---------------------~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~ 263 (267)
T 3t9t_A 206 YENRSNSEVV---------------------EDISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIA 263 (267)
T ss_dssp TTTCCHHHHH---------------------HHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHH---------------------HHHhcCCcCCCCccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 9764333110 000000 00011123445899999999999999999999999988775
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.8e-11 Score=130.05 Aligned_cols=241 Identities=9% Similarity=-0.027 Sum_probs=151.8
Q ss_pred cCccceEEEEEc--CCEEE-----EEeCCCcEEEEeCCCCeEEEEEeCCCCCe--EEEEEecCCCCEEEEEcCCCc----
Q 008820 250 GHRDCVTGLAVG--GGFLF-----SSSFDKSIHVWSLKDFSHVHTFKGHDHKV--MAVVYVDEDQPLCISGDSGGG---- 316 (552)
Q Consensus 250 ~H~~~V~~l~~s--~~~l~-----s~s~dg~I~iwd~~~~~~~~~~~~h~~~v--~~v~~~~~~~~~l~s~~~dg~---- 316 (552)
+|...+.+++|| |++|+ +|+.+.+|++||+.+++.+. ..+...+ ..++|+|++.. |+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~-l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKG-FYYEWLPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSE-EEEEECCCCTTSC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCE-EEEEEecCCCCCc
Confidence 566789999999 88888 45556789999999988641 1122222 68899998774 455666555
Q ss_pred ---------EEEEeCCCCCCCc-cccccccCCCceeeeEEEEeeCCCEEEEeeCCC----cEEEEECCCCceeEEecCCC
Q 008820 317 ---------IFVWSFSFPLGHE-PLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR----TIKAWSLLDGTLSCTMSGHK 382 (552)
Q Consensus 317 ---------i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg----~i~iwd~~~~~~~~~~~~h~ 382 (552)
|++|++.++.... .+.....+.. ......++++|++|+.++.++ .|++||..+++. ..+..+.
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~--~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~ 271 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPT--TFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGV 271 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTT--CEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECS
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCE--EEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCC
Confidence 9999998765321 1111111111 112347899999887777665 677777655544 3444455
Q ss_pred CCeEEEEEeCCEEEEEeC----CCcEEEEECCCCce--eEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEe--C-
Q 008820 383 SAVSTLAVCNGVLYSGSR----DGTIRLWSLSDHSL--LTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR--N- 453 (552)
Q Consensus 383 ~~v~~l~~~~~~l~s~~~----dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd--~- 453 (552)
..+....+.++.++..+. ++.|.+||+.++.. ...+..+........++++ ++.++++...|+..++|. .
T Consensus 272 ~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~ 350 (695)
T 2bkl_A 272 GAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK 350 (695)
T ss_dssp SCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred CceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence 556666667332444443 58899999987753 2344333322222324566 677888888999888885 3
Q ss_pred Ccceeeeecc-cceEEEEEe--cCCEEEEEe----CCCeEEEEecCCCeee
Q 008820 454 DKFMKSMQTH-KGSVFAVFL--EGKWLFTGG----WDKTVSVQELAGDEFE 497 (552)
Q Consensus 454 ~~~~~~~~~h-~~~v~~v~~--~~~~l~sgs----~dg~i~iwd~~~~~~~ 497 (552)
++....+..+ .+.+..+++ +++.++... ..++|++||+.+++..
T Consensus 351 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~ 401 (695)
T 2bkl_A 351 GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE 401 (695)
T ss_dssp CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 3344555554 566666654 676666322 3478999999887643
|
| >2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-13 Score=132.66 Aligned_cols=96 Identities=19% Similarity=0.257 Sum_probs=66.9
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....||+.|+|||++ .+ .....+.++|||||||++|||++|+ ||.......+
T Consensus 168 ~~~~~~~~~y~aPE~~------~~-------~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~------------- 221 (305)
T 2wtk_C 168 CRTSQGSPAFQPPEIA------NG-------LDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKL------------- 221 (305)
T ss_dssp ECCCCSCGGGCCHHHH------TC-------CSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-------------
T ss_pred cccCCCCCCCcChhhc------cC-------cccCCcchhhHHHHHHHHHHHHhCCCCCCCchHHHH-------------
Confidence 4566799999999998 32 1233467999999999999999999 9976443311
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
...+.............++.+++.+||+.+|.+||++.++.+.
T Consensus 222 --------~~~i~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 222 --------FENIGKGSYAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp --------HHHHHHCCCCCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred --------HHHHhcCCCCCCCccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 1111110111112234458999999999999999999887663
|
| >1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-13 Score=138.46 Aligned_cols=122 Identities=17% Similarity=0.191 Sum_probs=75.1
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+++.+...+. .....||+.|||||++ .| ...++.++|||||||+||||++|+ ||
T Consensus 195 ~~kl~DFG~a~~~~~~~~---~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwSlG~il~ell~G~~pf 257 (420)
T 1j1b_A 195 VLKLCDFGSAKQLVRGEP---NVSYICSRYYRAPELI------FG--------ATDYTSSIDVWSAGCVLAELLLGQPIF 257 (420)
T ss_dssp EEEECCCTTCEECCTTCC---CCSCCSCTTSCCHHHH------TT--------CSSCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred eEEeccchhhhhcccCCC---ceeeeeCCCcCCHHHH------cC--------CCCCCchhhhHHHHHHHHHHHhCCCCC
Confidence 45666 66766654432 4567899999999998 22 235678999999999999999999 99
Q ss_pred hHHHhh-hhhh---ccccCCCchhhhhhhhHHHHHHHHH-----H--------HhhhhcCccccHHHHHHhhcccCCCCC
Q 008820 90 TKELID-YIRC---VSTKASDDNIACLGMYMAWMEKVTY-----L--------LENKFGSEFVSLQLMFCQCLNFDPGCR 152 (552)
Q Consensus 90 ~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~--------~~~~~~~~~~~l~~~~~~~l~~~p~~R 152 (552)
.+.... .+.. ..+... ...+....+. . ..........++.+++.+||+++|.+|
T Consensus 258 ~~~~~~~~l~~i~~~lg~p~---------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R 328 (420)
T 1j1b_A 258 PGDSGVDQLVEIIKVLGTPT---------REQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTAR 328 (420)
T ss_dssp CCSSHHHHHHHHHHHHCSCC---------HHHHHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGS
T ss_pred CCCCHHHHHHHHHHHhCCCC---------HHHHHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHC
Confidence 654322 1110 000000 0000000000 0 000001223468999999999999999
Q ss_pred cchhhHHH
Q 008820 153 PLLTNVWK 160 (552)
Q Consensus 153 ~~~~~~~~ 160 (552)
|++.++.+
T Consensus 329 ~t~~e~l~ 336 (420)
T 1j1b_A 329 LTPLEACA 336 (420)
T ss_dssp CCHHHHHT
T ss_pred CCHHHHhC
Confidence 99887654
|
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-13 Score=133.96 Aligned_cols=131 Identities=19% Similarity=0.141 Sum_probs=77.5
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
+|++ |+++.+..... .......||+.|||||++. ...+++++|||||||+||+|+||+ ||+
T Consensus 173 ~kl~Dfg~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~---------------~~~~~~~~Di~slG~il~~l~~g~~pf~ 236 (326)
T 3uim_A 173 AVVGDFGLAKLMDYKDT-HVTTAVRGTIGHIAPEYLS---------------TGKSSEKTDVFGYGVMLLELITGQRAFD 236 (326)
T ss_dssp EEECCCSSCEECCSSSS-CEECCCCSCGGGCCHHHHH---------------HSEECHHHHHHHHHHHHHHHHHCCCSBC
T ss_pred EEeccCccccccCcccc-cccccccCCcCccCHHHhc---------------cCCCCccccchhHHHHHHHHHhCCCccc
Confidence 4555 55555443322 2355677999999999982 245678999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhh--hh--hhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 91 KELIDYIRCVSTKASDDNIAC--LG--MYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
......- .......|.. .. ....... ..............+.+++.+||+.+|.+||++.++.+.+....
T Consensus 237 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~~ 310 (326)
T 3uim_A 237 LARLAND----DDVMLLDWVKGLLKEKKLEALVD--VDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDG 310 (326)
T ss_dssp HHHHTTT----SCSBHHHHHTTTTSSCCSTTSSC--TTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTSS
T ss_pred ccccccc----cchhHHHHHHHHhhchhhhhhcC--hhhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCcc
Confidence 5432210 0000000000 00 0000000 00000000001224889999999999999999999999887643
|
| >3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-13 Score=133.54 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=71.4
Q ss_pred hccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhhh
Q 008820 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIACL 112 (552)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~ 112 (552)
.+.||+.|||||++ .+ ..+++++|||||||+||||++|. ||......... ..
T Consensus 181 ~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~---~~--------- 233 (310)
T 3s95_A 181 TVVGNPYWMAPEMI------NG---------RSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMD---FG--------- 233 (310)
T ss_dssp CCCSCGGGCCHHHH------TT---------CCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTT---SS---------
T ss_pred ccCCCcceeCHHHh------cC---------CCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHH---Hh---------
Confidence 67899999999999 32 56678999999999999999999 88653322110 00
Q ss_pred hhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 113 GMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
....... ...........+.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 234 ---~~~~~~~---~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~ 281 (310)
T 3s95_A 234 ---LNVRGFL---DRYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLR 281 (310)
T ss_dssp ---BCHHHHH---HHTCCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ---hhhhccc---cccCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 0001110 11112234556999999999999999999999988877664
|
| >3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-13 Score=131.15 Aligned_cols=117 Identities=21% Similarity=0.176 Sum_probs=74.5
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
.|+. |+++.+...... ......||+.|+|||++. ...+++++|||||||+||||+| |+ ||
T Consensus 152 ~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~il~~llt~g~~p~ 215 (281)
T 3cc6_A 152 VKLGDFGLSRYIEDEDYY-KASVTRLPIKWMSPESIN---------------FRRFTTASDVWMFAVCMWEILSFGKQPF 215 (281)
T ss_dssp EEECCCCGGGCC----------CCCCCGGGCCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred EEeCccCCCccccccccc-ccccCCCCcceeCchhhc---------------cCCCCchhccHHHHHHHHHHHhCCCCCc
Confidence 4555 445555443321 245567899999999982 2456789999999999999998 99 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
.......+. ...... ............+.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 216 ~~~~~~~~~-----------------~~~~~~---~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~ 272 (281)
T 3cc6_A 216 FWLENKDVI-----------------GVLEKG---DRLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVY 272 (281)
T ss_dssp TTSCGGGHH-----------------HHHHHT---CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ccCChHHHH-----------------HHHhcC---CCCCCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHH
Confidence 653322110 000000 000111123445899999999999999999999999888765
|
| >3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.2e-14 Score=137.75 Aligned_cols=117 Identities=19% Similarity=0.174 Sum_probs=56.1
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p 88 (552)
...|+. |+++.+... ......||+.|||||++ . ...+++++|||||||+||+|++|+ |
T Consensus 168 ~~~kl~Dfg~~~~~~~~----~~~~~~~t~~y~aPE~~------~---------~~~~~~~~Di~slG~il~~l~~g~~p 228 (336)
T 3fhr_A 168 AVLKLTDFGFAKETTQN----ALQTPCYTPYYVAPEVL------G---------PEKYDKSCDMWSLGVIMYILLCGFPP 228 (336)
T ss_dssp CCEEECCCTTCEEC-----------------------------------------CHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred ceEEEeccccceecccc----ccccCCCCcCccChhhh------C---------CCCCCchhhHHHHHHHHHHHHHCCCC
Confidence 345666 555554433 25677899999999998 2 245678999999999999999999 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
|.......+.. .............+.........++.+++.+||+.+|.+||++.++.+
T Consensus 229 f~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 287 (336)
T 3fhr_A 229 FYSNTGQAISP-------------GMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMN 287 (336)
T ss_dssp C----------------------------------CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred CCCccchhhhh-------------hHHHhhhccccccCchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 97654331100 000011111111111222234556999999999999999999988776
|
| >3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=8.8e-14 Score=130.97 Aligned_cols=116 Identities=17% Similarity=0.181 Sum_probs=76.8
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
.|+. |+++.+..... .......||+.|||||++. ...+++++|||||||++|+|+| |+ ||
T Consensus 143 ~~l~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~il~~l~~~g~~p~ 206 (268)
T 3sxs_A 143 VKVSDFGMTRYVLDDQY-VSSVGTKFPVKWSAPEVFH---------------YFKYSSKSDVWAFGILMWEVFSLGKMPY 206 (268)
T ss_dssp EEECCTTCEEECCTTCE-EECCSCCCCGGGCCHHHHH---------------HSEEETTHHHHHHHHHHHHHHTTTCCTT
T ss_pred EEEccCccceecchhhh-hcccCCCcCcccCCHHHHh---------------ccCCchhhhhHHHHHHHHHHHcCCCCCc
Confidence 4444 44544433322 1234566788999999992 2456789999999999999999 99 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
.......+. ...... ...........+.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 207 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~ 263 (268)
T 3sxs_A 207 DLYTNSEVV---------------------LKVSQGHRLYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLR 263 (268)
T ss_dssp TTSCHHHHH---------------------HHHHTTCCCCCCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGC
T ss_pred cccChHHHH---------------------HHHHcCCCCCCCCcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence 654333110 000000 00011112345889999999999999999999999888764
|
| >1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=8.6e-14 Score=139.11 Aligned_cols=59 Identities=22% Similarity=0.434 Sum_probs=46.1
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+++.+... .+...||+.|||||++ .+ ..++.++|||||||+||||+||+ ||
T Consensus 234 ~~kl~DfG~a~~~~~~-----~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~elltg~~pf 293 (397)
T 1wak_A 234 KVKIADLGNACWVHKH-----FTEDIQTRQYRSLEVL------IG---------SGYNTPADIWSTACMAFELATGDYLF 293 (397)
T ss_dssp CEEECCGGGCEETTBC-----SCSCCSCGGGCCHHHH------HT---------SCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred ceEecccccccccccc-----CccCCCCCcccCChhh------cC---------CCCCcHHHHHHHHHHHHHHhhCCCCC
Confidence 45555 555555433 4567899999999999 22 45678999999999999999999 99
Q ss_pred hH
Q 008820 90 TK 91 (552)
Q Consensus 90 ~~ 91 (552)
..
T Consensus 294 ~~ 295 (397)
T 1wak_A 294 EP 295 (397)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-13 Score=131.60 Aligned_cols=99 Identities=13% Similarity=0.246 Sum_probs=69.0
Q ss_pred hccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC--CchHHHhhhhhhccccCCCchhhh
Q 008820 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE--QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~--pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
...||+.|||||++. + ...+++++|||||||+||||++|. ||........
T Consensus 176 ~~~~~~~y~aPE~~~------~--------~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~-------------- 227 (289)
T 4fvq_A 176 ILQERIPWVPPECIE------N--------PKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRK-------------- 227 (289)
T ss_dssp HHHHTTTTSCHHHHH------C--------GGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHH--------------
T ss_pred ccCCcCcccCHHHhC------C--------CCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHH--------------
Confidence 456899999999992 1 144678999999999999999976 5443221100
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhhcC
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELIIK 168 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~~~ 168 (552)
.. ..............++.+++.+||+.+|.+||++.++.+.+.++..+
T Consensus 228 -------~~-~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p 276 (289)
T 4fvq_A 228 -------LQ-FYEDRHQLPAPKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTP 276 (289)
T ss_dssp -------HH-HHHTTCCCCCCSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC--
T ss_pred -------HH-HhhccCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCC
Confidence 00 00011111222355699999999999999999999999999988744
|
| >3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-13 Score=135.78 Aligned_cols=98 Identities=16% Similarity=0.186 Sum_probs=58.6
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccc-cccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSV-GYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNI 109 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~-~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~ 109 (552)
.....||+.|||||++ .+ ..+ +.++|||||||+||+|++|+ ||........
T Consensus 174 ~~~~~gt~~y~aPE~~------~~---------~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~------------ 226 (361)
T 3uc3_A 174 PKSTVGTPAYIAPEVL------LR---------QEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRD------------ 226 (361)
T ss_dssp -------CTTSCHHHH------HC---------SSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCC------------
T ss_pred CCCCcCCCCcCChhhh------cC---------CCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHH------------
Confidence 4567899999999999 22 233 34599999999999999999 9976443210
Q ss_pred hhhhhhHHHHHHHHHHHh--hhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 110 ACLGMYMAWMEKVTYLLE--NKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
............. +........+.+++.+||+.+|.+||++.++.+.
T Consensus 227 -----~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~h 275 (361)
T 3uc3_A 227 -----YRKTIQRILSVKYSIPDDIRISPECCHLISRIFVADPATRISIPEIKTH 275 (361)
T ss_dssp -----HHHHHHHHHTTCCCCCTTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred -----HHHHHHHHhcCCCCCCCcCCCCHHHHHHHHHHccCChhHCcCHHHHHhC
Confidence 1111111111110 1111234568999999999999999999887663
|
| >2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-13 Score=134.87 Aligned_cols=117 Identities=15% Similarity=0.225 Sum_probs=80.0
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
.|+. |+++.+.............||+.|+|||++. ...++.++|||||||+||||+| |+ ||
T Consensus 196 ~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~il~ellt~g~~p~ 260 (334)
T 2pvf_A 196 MKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALF---------------DRVYTHQSDVWSFGVLMWEIFTLGGSPY 260 (334)
T ss_dssp EEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHH---------------HCEECHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred EEEccccccccccccccccccCCCCcccceeChHHhc---------------CCCcChHHHHHHHHHHHHHHHhCCCCCc
Confidence 4555 5555555443222345567899999999992 2456789999999999999999 99 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
.......+. ..+.... ..........+.+++.+||+.+|.+||++.++.+.+.++.
T Consensus 261 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~ 317 (334)
T 2pvf_A 261 PGIPVEELF---------------------KLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIL 317 (334)
T ss_dssp TTCCHHHHH---------------------HHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CcCCHHHHH---------------------HHHhcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 764433111 1110000 0111223445899999999999999999999999988875
|
| >1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-13 Score=133.65 Aligned_cols=117 Identities=21% Similarity=0.217 Sum_probs=79.4
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
.|+. |+++.+.............||+.|||||++. ...++.++|||||||+||+|+| |+ ||
T Consensus 177 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~il~el~~~g~~p~ 241 (322)
T 1p4o_A 177 VKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLK---------------DGVFTTYSDVWSFGVVLWEIATLAEQPY 241 (322)
T ss_dssp EEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHHTSCCTT
T ss_pred EEECcCccccccccccccccccCCCCCCCccChhhhc---------------cCCCCchhhHHHHHHHHHHHHhcCCCcc
Confidence 4555 5565555443322345667899999999982 2456789999999999999999 78 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
.......+. ..+... ...........+.+++.+||+.+|.+||++.++.+.+...+
T Consensus 242 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~ 298 (322)
T 1p4o_A 242 QGLSNEQVL---------------------RFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEM 298 (322)
T ss_dssp TTSCHHHHH---------------------HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGS
T ss_pred ccCCHHHHH---------------------HHHHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhh
Confidence 664333111 000000 00111123345889999999999999999999999888765
|
| >3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-13 Score=132.85 Aligned_cols=125 Identities=17% Similarity=0.219 Sum_probs=68.0
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceee--cccccccccccccccchhhhhhhhhhCC
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVE--CEESEFSVGYGSDVWPVACILLSLLIGE 87 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~--~~~~~~~~~~~sDv~SlG~~l~~lltg~ 87 (552)
...|+. |+++.+.............||+.|||||++. +.... .......++.++|||||||+||||++|+
T Consensus 163 ~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~ 236 (313)
T 3cek_A 163 GMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIK------DMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGK 236 (313)
T ss_dssp TEEEECCCSSSCC--------------CCGGGCCHHHHT------TCC----------CCCHHHHHHHHHHHHHHHHHSS
T ss_pred CeEEEeeccccccccCccccccccCCCCCCCcCCHHHHh------hcccccccccccccCCchHHHHHHHHHHHHHHhCC
Confidence 345666 5566655544333456778999999999982 21000 0001245678999999999999999999
Q ss_pred -CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHH-HHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTY-LLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
||...... . ......... ............+.+++.+||+.+|.+||++.++.+.
T Consensus 237 ~pf~~~~~~-~------------------~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 293 (313)
T 3cek_A 237 TPFQQIINQ-I------------------SKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 293 (313)
T ss_dssp CTTTTCCSH-H------------------HHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred CchhhHHHH-H------------------HHHHHHHhcccccCCcccchHHHHHHHHHHccCCcccCcCHHHHhcC
Confidence 99652211 0 000000000 0000111223458999999999999999998876653
|
| >4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-13 Score=135.82 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=74.8
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+|+.+...+. .....||+.|||||++ .| ...++.++|||||||+||||++|+ ||
T Consensus 180 ~~kL~DFG~a~~~~~~~~---~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwSlG~il~ell~g~~pf 242 (394)
T 4e7w_A 180 VLKLIDFGSAKILIAGEP---NVSYICSRYYRAPELI------FG--------ATNYTTNIDIWSTGCVMAELMQGQPLF 242 (394)
T ss_dssp EEEECCCTTCEECCTTCC---CCSSCSCGGGCCHHHH------TT--------CSSCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred cEEEeeCCCcccccCCCC---CcccccCcCccCHHHH------cC--------CCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence 35565 56665544433 4567899999999998 22 234678999999999999999999 99
Q ss_pred hHHHhh-hhh---hccccCCCchhhhhhhhHHHHHHHHHH-------------HhhhhcCccccHHHHHHhhcccCCCCC
Q 008820 90 TKELID-YIR---CVSTKASDDNIACLGMYMAWMEKVTYL-------------LENKFGSEFVSLQLMFCQCLNFDPGCR 152 (552)
Q Consensus 90 ~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~l~~~p~~R 152 (552)
.+.... .+. ...+.... ..+....+.. .........+++.+++.+||+.+|.+|
T Consensus 243 ~~~~~~~~l~~i~~~~g~p~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R 313 (394)
T 4e7w_A 243 PGESGIDQLVEIIKVLGTPSR---------EQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSAR 313 (394)
T ss_dssp CCSSHHHHHHHHHHHHCCCCH---------HHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGS
T ss_pred CCCCHHHHHHHHHHHhCCCCH---------HHHHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhC
Confidence 654322 111 00000000 0000000000 000111234468999999999999999
Q ss_pred cchhhHHH
Q 008820 153 PLLTNVWK 160 (552)
Q Consensus 153 ~~~~~~~~ 160 (552)
|++.++.+
T Consensus 314 ~t~~e~l~ 321 (394)
T 4e7w_A 314 LTAIEALC 321 (394)
T ss_dssp CCHHHHHT
T ss_pred CCHHHHhc
Confidence 99887655
|
| >1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-13 Score=139.77 Aligned_cols=118 Identities=17% Similarity=0.178 Sum_probs=81.3
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
.+|+. |+++.+...... ......||+.|||||++. ...++.++|||||||+||||+| |+ |
T Consensus 322 ~~kl~DFG~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~---------------~~~~~~~~DvwslG~~l~el~t~g~~P 385 (454)
T 1qcf_A 322 VCKIADFGLARVIEDNEYT-AREGAKFPIKWTAPEAIN---------------FGSFTIKSDVWSFGILLMEIVTYGRIP 385 (454)
T ss_dssp CEEECSTTGGGGBCCHHHH-TTCSSSSCGGGSCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred cEEEeeCCCceEcCCCcee-ccCCCcccccccCHHHhc---------------cCCCCcHHHHHhHHHHHHHHHhCCCCC
Confidence 45666 667666554332 345567899999999992 2456789999999999999999 99 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|.+.....+. ..+... ...+.......++.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 386 ~~~~~~~~~~-----------------~~i~~~---~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~ 443 (454)
T 1qcf_A 386 YPGMSNPEVI-----------------RALERG---YRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFY 443 (454)
T ss_dssp STTCCHHHHH-----------------HHHHHT---CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSS
T ss_pred CCCCCHHHHH-----------------HHHHcC---CCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHH
Confidence 9764333111 000000 000111123445899999999999999999999999888765
|
| >3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-13 Score=137.00 Aligned_cols=118 Identities=18% Similarity=0.164 Sum_probs=77.9
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
.+|+. |+++...............+|+.|||||++. ...++.++|||||||+||||+| |+ |
T Consensus 251 ~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~DvwslG~il~el~t~g~~p 315 (377)
T 3cbl_A 251 VLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALN---------------YGRYSSESDVWSFGILLWETFSLGASP 315 (377)
T ss_dssp CEEECCGGGCEECTTSEEECCSSCCEEEGGGSCHHHHH---------------HCEEEHHHHHHHHHHHHHHHHTTSCCS
T ss_pred cEEECcCCCceecCCCceeecCCCCCCCcCcCCHhHhc---------------cCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence 45666 5665544433221123345688999999992 2456789999999999999998 99 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|.......+. ..+... ..+.......++.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 316 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~ 373 (377)
T 3cbl_A 316 YPNLSNQQTR---------------------EFVEKGGRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIR 373 (377)
T ss_dssp STTSCHHHHH---------------------HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHH---------------------HHHHcCCCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence 9764332111 000000 00011123345889999999999999999999999887764
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-09 Score=104.87 Aligned_cols=258 Identities=11% Similarity=-0.030 Sum_probs=165.5
Q ss_pred cEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEc---------CCCcEEEEeCCCCCCCccccccccCCC--ce
Q 008820 273 SIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGD---------SGGGIFVWSFSFPLGHEPLKKWNEEKD--WR 341 (552)
Q Consensus 273 ~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~ 341 (552)
+|.++|..+++.+.++.....+ .++++|++..+.++.. .++.|.+||..+.+....+........ ..
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~ 125 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP 125 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence 7899999999998888765444 9999998886666543 468899999986554333322100000 00
Q ss_pred eeeEEEEeeCCCEEEEeeC--CCcEEEEECCCCceeEE-ecCCCCCeEEEEEe---CCEEEEEeCCCcEEEEECCCCcee
Q 008820 342 YSGIHALTTSGRYLYTGSG--DRTIKAWSLLDGTLSCT-MSGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLL 415 (552)
Q Consensus 342 ~~~~~~~~~~~~~l~sgs~--dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~ 415 (552)
...-..++|+|++|+++.. ++.|.++| .+++.+.. +... .. +.+. +..+++.+.||.+.++|. +++..
T Consensus 126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~ 199 (373)
T 2mad_H 126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-TC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAA 199 (373)
T ss_pred CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-ce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEE
Confidence 1123579999999888874 57899999 99998887 6532 22 2232 346778889999999999 88776
Q ss_pred EEEec----CCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcc----eeeeec------------ccceEEEEEecCC
Q 008820 416 TVLEE----DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF----MKSMQT------------HKGSVFAVFLEGK 475 (552)
Q Consensus 416 ~~~~~----~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~------------h~~~v~~v~~~~~ 475 (552)
..... ...........+.+++..++..+..+.+.+.|.... ...+.. .......++++++
T Consensus 200 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~ 279 (373)
T 2mad_H 200 GAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD 279 (373)
T ss_pred EEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCC
Confidence 43321 111111111345555555444457788999986421 122211 1111234556888
Q ss_pred EEEEEeC----------CCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-C--eEEEEe-CCCeEEEEEecCCcc
Q 008820 476 WLFTGGW----------DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-G--KLFVGC-ADRTVKIALCNRQIP 541 (552)
Q Consensus 476 ~l~sgs~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~--~l~s~s-~Dg~v~iw~~~~~~~ 541 (552)
.++.+.. ++.|.++|..+.+....+.. ......++|++ + .++++. .++.|.++|.. +.+
T Consensus 280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~------g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~-t~~ 352 (373)
T 2mad_H 280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL------GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAG-AGD 352 (373)
T ss_pred EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC------CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECC-CCC
Confidence 7777653 35799999999887666543 23467888984 3 477776 58999999987 454
Q ss_pred eeEE
Q 008820 542 EIFS 545 (552)
Q Consensus 542 ~~~~ 545 (552)
.+.+
T Consensus 353 vv~~ 356 (373)
T 2mad_H 353 QDQS 356 (373)
T ss_pred EEee
Confidence 4544
|
| >3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-13 Score=133.17 Aligned_cols=117 Identities=14% Similarity=0.097 Sum_probs=72.3
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
.|+. |+++.+.............||+.|+|||++ . ...+++++|||||||+||+|++ |+ ||
T Consensus 186 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~il~el~~~g~~p~ 250 (313)
T 3brb_A 186 VCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESL------A---------DRVYTSKSDVWAFGVTMWEIATRGMTPY 250 (313)
T ss_dssp EEECSCSCC----------------CCGGGSCHHHH------H---------SSCCCHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred EEEeecCcceecccccccCcccccCCCccccCchhh------c---------CCCccchhhhHHHHHHHHHHHhcCCCCC
Confidence 4555 556655544332234566789999999999 2 2456789999999999999999 88 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
.......+. ...... ...........+.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 251 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~ 307 (313)
T 3brb_A 251 PGVQNHEMY---------------------DYLLHGHRLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLL 307 (313)
T ss_dssp TTCCGGGHH---------------------HHHHTTCCCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ccCCHHHHH---------------------HHHHcCCCCCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 764433110 000000 00111123345899999999999999999999999888765
|
| >2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-13 Score=132.15 Aligned_cols=117 Identities=21% Similarity=0.380 Sum_probs=68.3
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+..... ......||+.|+|||++ . ...++.++|||||||+||+|++|+ ||.
T Consensus 175 ~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~------~---------~~~~~~~~Dv~slG~il~~l~~g~~p~~ 237 (310)
T 2wqm_A 175 VKLGDLGLGRFFSSKTT--AAHSLVGTPYYMSPERI------H---------ENGYNFKSDIWSLGCLLYEMAALQSPFY 237 (310)
T ss_dssp EEECCC--------------------CCSSCCHHHH------T---------TCCCCHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred EEEEeccceeeecCCCc--cccccCCCeeEeChHHh------C---------CCCCCchhhHHHHHHHHHHHHhCCCCCc
Confidence 4455 44444443322 24567899999999998 2 255678999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH--HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL--LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
...... ......+... +.........++.+++.+||+.+|.+||++.++.+.+.++.
T Consensus 238 ~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~ 296 (310)
T 2wqm_A 238 GDKMNL-------------------YSLCKKIEQCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMH 296 (310)
T ss_dssp ---CCH-------------------HHHHHHHHTTCSCCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ccchhH-------------------HHHHHHhhcccCCCCcccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence 643220 0011111000 00001123445999999999999999999999999888775
|
| >1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-13 Score=135.11 Aligned_cols=126 Identities=13% Similarity=0.165 Sum_probs=74.2
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++..... .+...||+.|||||++. + ...++.++|||||||+||||++|+ ||.
T Consensus 167 ~kl~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~~------~--------~~~~~~~~DiwslG~il~ell~g~~pf~ 227 (367)
T 1cm8_A 167 LKILDFGLARQADSE-----MTGYVVTRWYRAPEVIL------N--------WMRYTQTVDIWSVGCIMAEMITGKTLFK 227 (367)
T ss_dssp EEECCCTTCEECCSS-----CCSSCSCGGGCCTHHHH------T--------TTCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred EEEEeeecccccccc-----cCcCcCCCCcCCHHHHh------C--------CCCCChhhhHHHHHHHHHHHHhCCCCCC
Confidence 4555 556554432 56789999999999982 1 245678999999999999999999 996
Q ss_pred HHHhh-hhhh---ccccCCCchh-hhhhhhHHHHHHHHHHH-------hhhhcCccccHHHHHHhhcccCCCCCcchhhH
Q 008820 91 KELID-YIRC---VSTKASDDNI-ACLGMYMAWMEKVTYLL-------ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNV 158 (552)
Q Consensus 91 ~~~~~-~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~ 158 (552)
+.... ++.. ..+. .+..+ .... ...........+ ........+.+.+++.+||+.+|.+||++.++
T Consensus 228 ~~~~~~~l~~i~~~~g~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~ 305 (367)
T 1cm8_A 228 GSDHLDQLKEIMKVTGT-PPAEFVQRLQ-SDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEA 305 (367)
T ss_dssp CSSHHHHHHHHHHHHCC-CCHHHHHTCS-CHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred CCCHHHHHHHHHHhcCC-CCHHHHHHhh-hHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHH
Confidence 54322 1110 0010 00000 0000 000000000000 00111234568999999999999999998876
Q ss_pred HH
Q 008820 159 WK 160 (552)
Q Consensus 159 ~~ 160 (552)
.+
T Consensus 306 l~ 307 (367)
T 1cm8_A 306 LA 307 (367)
T ss_dssp HH
T ss_pred hc
Confidence 65
|
| >3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.6e-14 Score=141.73 Aligned_cols=113 Identities=10% Similarity=-0.006 Sum_probs=70.2
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.+|+. |+|+..... .....| +.|||||++...... .........+++++|||||||+||||+||+ ||
T Consensus 244 ~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~~~~~~----~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf 313 (377)
T 3byv_A 244 GVFLTGFEHLVRDGAR-----VVSSVS-RGFEPPELEARRATI----SYHRDRRTLMTFSFDAWALGLVIYWIWCADLPI 313 (377)
T ss_dssp CEEECCGGGCEETTCE-----EECCCC-TTCCCHHHHHHHTST----HHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CEEEEechhheecCCc-----ccCCCC-cCccChhhhcccccc----cccccccccCChhhhHHHHHHHHHHHHHCCCCC
Confidence 45666 566654432 567788 999999999432000 000001125678999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.......+. ... .........++.+++.+||+.+|.+||++.++.+
T Consensus 314 ~~~~~~~~~-----------------~~~--------~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 359 (377)
T 3byv_A 314 TKDAALGGS-----------------EWI--------FRSCKNIPQPVRALLEGFLRYPKEDRLLPLQAME 359 (377)
T ss_dssp ------CCS-----------------GGG--------GSSCCCCCHHHHHHHHHHTCSSGGGCCCHHHHHT
T ss_pred cccccccch-----------------hhh--------hhhccCCCHHHHHHHHHHcCCCchhCCCHHHHhh
Confidence 775533111 000 0001123345889999999999999999887655
|
| >3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.9e-14 Score=141.07 Aligned_cols=118 Identities=12% Similarity=0.020 Sum_probs=73.0
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.+|+. |+|+.+... .....||+.|||||++ .+ ....++.++|||||||+||||+||+ ||
T Consensus 232 ~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~------~~-------~~~~~~~~~DiwSlG~il~elltg~~Pf 293 (371)
T 3q60_A 232 RLMLGDVSALWKVGTR-----GPASSVPVTYAPREFL------NA-------STATFTHALNAWQLGLSIYRVWCLFLPF 293 (371)
T ss_dssp CEEECCGGGEEETTCE-----EEGGGSCGGGCCHHHH------TC-------SEEECCHHHHHHHHHHHHHHHHHSSCST
T ss_pred CEEEEecceeeecCCC-----ccCccCCcCCcChhhc------cC-------CCCCcCccccHHHHHHHHHHHHhCCCCC
Confidence 35666 566655443 2356788999999999 21 1246789999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
................. .. . . .....+........+.+++.+||+.+|.+||++.++.+
T Consensus 294 ~~~~~~~~~~~~~~~~~---~~-~-~-------~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 352 (371)
T 3q60_A 294 GLVTPGIKGSWKRPSLR---VP-G-T-------DSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAME 352 (371)
T ss_dssp TBCCTTCTTCCCBCCTT---SC-C-C-------CSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred CCcCcccccchhhhhhh---hc-c-c-------cccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 77532211000000000 00 0 0 00000111123445899999999999999999876643
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.4e-10 Score=111.53 Aligned_cols=218 Identities=11% Similarity=0.059 Sum_probs=140.4
Q ss_pred CeEEEEEecCCCCEEEEE--------cCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCC---C
Q 008820 294 KVMAVVYVDEDQPLCISG--------DSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD---R 362 (552)
Q Consensus 294 ~v~~v~~~~~~~~~l~s~--------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d---g 362 (552)
.+...++ ++..++++. ..++.|.+||+.++... .+ .......++|+|+.|+.++.+ +
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l---------~~~~~~~~SpDg~~la~~~~~~~~~ 83 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI---------ENATMPRISPDGKKIAFMRANEEKK 83 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE---------ESCEEEEECTTSSEEEEEEEETTTT
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec---------ccCCCeEECCCCCEEEEEEeccCCC
Confidence 4555666 455444432 12577999998865422 11 111234889999988877654 2
Q ss_pred --cEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeC---------------------------CCcEEEEECCC
Q 008820 363 --TIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSR---------------------------DGTIRLWSLSD 411 (552)
Q Consensus 363 --~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~---------------------------dg~i~iwd~~~ 411 (552)
.|.+||+.+++.......+ . +.++.|+ ++ .|+.++. ...|++||+.+
T Consensus 84 ~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 161 (347)
T 2gop_A 84 VSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES 161 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred cceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence 4888899888776555433 3 8999999 44 6766653 25799999998
Q ss_pred CceeEEEecCCCCceEEEEEEcCCCCEEEEEECCC---------cEEEEeCCcceeeeecccceEEEEEecCCEEEEEeC
Q 008820 412 HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG---------SIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLFTGGW 482 (552)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---------~i~iwd~~~~~~~~~~h~~~v~~v~~~~~~l~sgs~ 482 (552)
++.+..+... .+.. ..|+|+| +++++..++ .|+++| ......+..+ ..+..++++|++|+.++.
T Consensus 162 ~~~~~~l~~~---~~~~-~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~-~~~~~~spdg~~l~~~~~ 234 (347)
T 2gop_A 162 EEVIEEFEKP---RFSS-GIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFEK-VSFYAVDSDGERILLYGK 234 (347)
T ss_dssp TEEEEEEEEE---TTCE-EEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEEE-ESEEEEEECSSCEEEEEC
T ss_pred CeEEeeecCC---Cccc-ccCCCCe-EEEEEecccccccccccccEEEeC-CCceEEeccC-cceeeECCCCCEEEEEEc
Confidence 8774455442 2333 5899999 777776542 455667 4334444445 566667889999888775
Q ss_pred C--------CeEEEEecCCCeeeeeeccCCCcccCcceEE-EEEeCCeEEEEeCCCeEEEEEecCCcc
Q 008820 483 D--------KTVSVQELAGDEFEEDVIPTGAIPCGSVITA-LLYWQGKLFVGCADRTVKIALCNRQIP 541 (552)
Q Consensus 483 d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~-l~~~~~~l~s~s~Dg~v~iw~~~~~~~ 541 (552)
+ ..|.+|| +++....... ....+.. +.|+++.+++++.++.++|| ++ .+.
T Consensus 235 ~~~~~~~~~~~l~~~d--~~~~~~l~~~-----~~~~~~~~~~~sdg~~~~~~~~~~~~l~-~~-~g~ 293 (347)
T 2gop_A 235 PEKKYMSEHNKLYIYD--GKEVMGILDE-----VDRGVGQAKIKDGKVYFTLFEEGSVNLY-IW-DGE 293 (347)
T ss_dssp CSSSCCCSSCEEEEEC--SSCEEESSTT-----CCSEEEEEEEETTEEEEEEEETTEEEEE-EE-SSS
T ss_pred cccCCccccceEEEEC--CCceEecccc-----CCcccCCccEEcCcEEEEEecCCcEEEE-Ec-CCc
Confidence 4 3688888 4433322211 1345665 88885557788999999999 88 443
|
| >2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-13 Score=130.26 Aligned_cols=93 Identities=15% Similarity=0.181 Sum_probs=65.7
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....||+.|+|||++ .+ ..+++++|||||||++|+|++|+ ||........
T Consensus 169 ~~~~~~~~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~------------- 220 (284)
T 2vgo_A 169 RRTMCGTLDYLPPEMI------EG---------KTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTET------------- 220 (284)
T ss_dssp BCCCCSCGGGCCHHHH------TT---------CCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHH-------------
T ss_pred cccccCCCCcCCHHHh------cc---------CCCCcccchhhHHHHHHHHHHCCCCCCCCCHhHH-------------
Confidence 3457899999999999 22 45678999999999999999999 9965332211
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
...+..............+.+++.+||+.+|.+||++.++.+
T Consensus 221 --------~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 221 --------HRRIVNVDLKFPPFLSDGSKDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp --------HHHHHTTCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred --------HHHHhccccCCCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence 000000000111123345889999999999999999988765
|
| >3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-13 Score=129.72 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=78.1
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
.|+. |+++.+..... .......||+.|+|||++. ...+++++|||||||++|+|+| |+ ||
T Consensus 159 ~kl~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Dv~slG~~l~~l~t~g~~p~ 222 (283)
T 3gen_A 159 VKVSDFGLSRYVLDDEY-TSSVGSKFPVRWSPPEVLM---------------YSKFSSKSDIWAFGVLMWEIYSLGKMPY 222 (283)
T ss_dssp EEECSTTGGGGBCCHHH-HSTTSTTSCGGGCCHHHHH---------------HCCCSHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred EEEcccccccccccccc-ccccCCccCcccCCHHHhc---------------cCCCCchhhHHHHHHHHHHHHhCCCCCc
Confidence 4454 45555544432 2345567889999999992 2456789999999999999998 99 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
.......+. ..+.... ..........+.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 223 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~ 279 (283)
T 3gen_A 223 ERFTNSETA---------------------EHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVM 279 (283)
T ss_dssp TTSCHHHHH---------------------HHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred cccChhHHH---------------------HHHhcccCCCCCCcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHh
Confidence 654332110 0000000 0011122345889999999999999999999999888765
|
| >3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.2e-13 Score=132.79 Aligned_cols=142 Identities=14% Similarity=0.125 Sum_probs=76.4
Q ss_pred hhhcc--cccccccccc------hhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhh
Q 008820 13 VAKVG--CVGSRICDKE------VGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLL 84 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~------~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~ll 84 (552)
.+|+. |+++.+.... .........||+.|||||++. |.. .......+++++|||||||+||||+
T Consensus 158 ~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~--~~~~~~~~~~~~DiwslG~il~ell 229 (336)
T 3g2f_A 158 TCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLE------GAV--NLRDXESALKQVDMYALGLIYWEIF 229 (336)
T ss_dssp CEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHT------TCC--CGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEeeccceeecccccccCccccccccccCCCccceeCchhhc------CCc--ccccccccccccchHHHHHHHHHHH
Confidence 35555 5565554321 112345678999999999992 200 0000134567899999999999999
Q ss_pred hCC-CchH-HHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHH-hhhhcC-------ccccHHHHHHhhcccCCCCCcc
Q 008820 85 IGE-QFTK-ELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLL-ENKFGS-------EFVSLQLMFCQCLNFDPGCRPL 154 (552)
Q Consensus 85 tg~-pf~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~l~~~~~~~l~~~p~~R~~ 154 (552)
||. ||.. ........ ..+. ................... ...... ....+.+++.+||+.+|.+||+
T Consensus 230 ~g~~p~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps 305 (336)
T 3g2f_A 230 MRCTDLFPGESVPEYQM-AFQT---EVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLT 305 (336)
T ss_dssp TTBGGGSTTSCCCCCCC-TTHH---HHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCC
T ss_pred hcCCcCCCccchhHHHH-hhhc---ccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcc
Confidence 998 6633 22111100 0000 0000000000000000000 000000 1124899999999999999999
Q ss_pred hhhHHHHHHhhh
Q 008820 155 LTNVWKCIRELI 166 (552)
Q Consensus 155 ~~~~~~~l~~~~ 166 (552)
+.++.+.+..++
T Consensus 306 ~~e~l~~L~~ll 317 (336)
T 3g2f_A 306 AQXAEERMAELM 317 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 999999998876
|
| >3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-13 Score=134.19 Aligned_cols=104 Identities=17% Similarity=0.177 Sum_probs=71.5
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.+|+. |+++.+..... .....||+.|||||++ .+ ....++++|||||||+||+|++|+ ||
T Consensus 168 ~~kL~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~el~~g~~pf 230 (335)
T 3dls_A 168 TIKLIDFGSAAYLERGKL---FYTFCGTIEYCAPEVL------MG--------NPYRGPELEMWSLGVTLYTLVFEENPF 230 (335)
T ss_dssp CEEECCCTTCEECCTTCC---BCEECSCGGGCCHHHH------TT--------CCBCSHHHHHHHHHHHHHHHHHSSCSC
T ss_pred cEEEeecccceECCCCCc---eeccCCCccccChhhh------cC--------CCCCCCcccchhHHHHHHHHHhCCCch
Confidence 35555 55655554432 4567899999999999 32 122367899999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
...... +. .. . ........++.+++.+||+.+|.+||++.++.+
T Consensus 231 ~~~~~~-~~---~~-~----------------------~~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~ 274 (335)
T 3dls_A 231 CELEET-VE---AA-I----------------------HPPYLVSKELMSLVSGLLQPVPERRTTLEKLVT 274 (335)
T ss_dssp SSGGGG-TT---TC-C----------------------CCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred hhHHHH-Hh---hc-c----------------------CCCcccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 652211 00 00 0 000112335889999999999999999888766
|
| >2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... | Back alignment and structure |
|---|
Probab=99.36 E-value=2.2e-13 Score=134.66 Aligned_cols=61 Identities=20% Similarity=0.436 Sum_probs=37.6
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++...... ..+...||+.|||||++ .+ ..++.++|||||||+||||++|+ ||.
T Consensus 166 ~kl~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~el~~g~~pf~ 227 (371)
T 2xrw_A 166 LKILDFGLARTAGTSF---MMTPYVVTRYYRAPEVI------LG---------MGYKENVDIWSVGCIMGEMIKGGVLFP 227 (371)
T ss_dssp EEECCCCC-------------------CTTCCHHHH------TT---------CCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred EEEEEeeccccccccc---ccCCceecCCccCHHHh------cC---------CCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence 4555 5555544332 25678999999999999 32 45778999999999999999999 996
Q ss_pred HH
Q 008820 91 KE 92 (552)
Q Consensus 91 ~~ 92 (552)
+.
T Consensus 228 ~~ 229 (371)
T 2xrw_A 228 GT 229 (371)
T ss_dssp CS
T ss_pred CC
Confidence 54
|
| >3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ... | Back alignment and structure |
|---|
Probab=99.36 E-value=3.1e-13 Score=133.23 Aligned_cols=132 Identities=16% Similarity=0.229 Sum_probs=75.1
Q ss_pred hhcc--cccccccccch-hhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 14 AKVG--CVGSRICDKEV-GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.|+. |+++....... ....+...||+.|||||++. + ...++.++|||||||+||+|++|+ ||
T Consensus 167 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~--------~~~~~~~~DiwslG~il~ell~g~~pf 232 (364)
T 3qyz_A 167 LKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIML------N--------SKGYTKSIDIWSVGCILAEMLSNRPIF 232 (364)
T ss_dssp EEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHH------T--------BCSCSTHHHHHHHHHHHHHHHHSSCSS
T ss_pred EEEEeCcceEecCCCCCccccccccccccCCCCCHHhc------C--------CCCCCcchhHHHHHHHHHHHHHCCCCC
Confidence 4555 55554443322 12356779999999999982 1 234678999999999999999999 99
Q ss_pred hHHHhhhh-hh---ccccCCCchhhhhhhhHHHHHHHHHHH-------hhhhcCccccHHHHHHhhcccCCCCCcchhhH
Q 008820 90 TKELIDYI-RC---VSTKASDDNIACLGMYMAWMEKVTYLL-------ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNV 158 (552)
Q Consensus 90 ~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~ 158 (552)
.+...... .. ..+...+..|....... ........+ .........++.+++.+||+.+|.+||++.++
T Consensus 233 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~ 311 (364)
T 3qyz_A 233 PGKHYLDQLNHILGILGSPSQEDLNCIINLK-ARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQA 311 (364)
T ss_dssp CCSSGGGHHHHHHHHHCSCCHHHHHTCCCHH-HHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred CCCChHHHHHHHHHHhCCCCHHHHHHhhhhh-HHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence 65432211 10 00111110110000000 000000000 00111234458999999999999999998876
Q ss_pred HH
Q 008820 159 WK 160 (552)
Q Consensus 159 ~~ 160 (552)
.+
T Consensus 312 l~ 313 (364)
T 3qyz_A 312 LA 313 (364)
T ss_dssp HT
T ss_pred hc
Confidence 55
|
| >3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.9e-13 Score=133.38 Aligned_cols=123 Identities=15% Similarity=0.215 Sum_probs=74.9
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.+|+. |+++.+..... .....||+.|||||++ .+ ...++.++|||||||+||||+||+ ||
T Consensus 170 ~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~------~~--------~~~~~~~~Di~slG~il~ell~g~~pf 232 (360)
T 3e3p_A 170 TLKLCDFGSAKKLSPSEP---NVAYICSRYYRAPELI------FG--------NQHYTTAVDIWSVGCIFAEMMLGEPIF 232 (360)
T ss_dssp EEEECCCTTCBCCCTTSC---CCSTTSCGGGCCHHHH------TT--------CSSCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred cEEEeeCCCceecCCCCC---cccccCCcceeCHHHH------cC--------CCCCCcHHHHHHHHHHHHHHHhCCCCc
Confidence 45666 56666655433 4567899999999998 22 234678999999999999999999 99
Q ss_pred hHHHhhhh-hhc-cccCCCchhhhhhhhHHHHHHH-----------------HHHHhhhhcCccccHHHHHHhhcccCCC
Q 008820 90 TKELIDYI-RCV-STKASDDNIACLGMYMAWMEKV-----------------TYLLENKFGSEFVSLQLMFCQCLNFDPG 150 (552)
Q Consensus 90 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~~~~~~~l~~~p~ 150 (552)
.......+ ..+ .....+ ........ .............++.+++.+||+.+|.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~ 304 (360)
T 3e3p_A 233 RGDNSAGQLHEIVRVLGCP--------SREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPE 304 (360)
T ss_dssp CCSSHHHHHHHHHHHHCCC--------CHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGG
T ss_pred CCCChHHHHHHHHHHcCCC--------CHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCcc
Confidence 65432211 100 000000 00000000 0000000111234588999999999999
Q ss_pred CCcchhhHHH
Q 008820 151 CRPLLTNVWK 160 (552)
Q Consensus 151 ~R~~~~~~~~ 160 (552)
+||++.++.+
T Consensus 305 ~Rpt~~e~l~ 314 (360)
T 3e3p_A 305 ERMKPYEALC 314 (360)
T ss_dssp GSCCHHHHTT
T ss_pred ccCCHHHHhc
Confidence 9999887654
|
| >3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-13 Score=131.90 Aligned_cols=131 Identities=12% Similarity=0.115 Sum_probs=69.1
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
+|+. |+++....... ......||+.|||||++ .| ...++.++|||||||+||+|++|+ ||.
T Consensus 139 ~kl~Dfg~a~~~~~~~~--~~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~~l~~g~~pf~ 202 (324)
T 3mtl_A 139 LKLADFGLARAKSIPTK--TYDNEVVTLWYRPPDIL------LG--------STDYSTQIDMWGVGCIFYEMATGRPLFP 202 (324)
T ss_dssp EEECSSSEEECC--------------CGGGCCHHHH------TT--------CCCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred EEEccCcccccccCCcc--ccccccCcccccChhhh------cC--------CCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence 4555 44444433322 25667899999999998 22 244678999999999999999999 996
Q ss_pred HHHhhhh----hhccccCCCchhhhhhhhHHHHHHH-----HHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYI----RCVSTKASDDNIACLGMYMAWMEKV-----TYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
+...... ........+..|............. .............++.+++.+||+.+|.+||++.++.+
T Consensus 203 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 281 (324)
T 3mtl_A 203 GSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK 281 (324)
T ss_dssp CSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred CCCHHHHHHHHHHHhCCCChHhchhhhcchhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence 5433211 1111111222221100000000000 00000111223445889999999999999999887655
|
| >1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-13 Score=131.27 Aligned_cols=118 Identities=15% Similarity=0.089 Sum_probs=78.7
Q ss_pred hhcc--cccccccccch-hhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 14 AKVG--CVGSRICDKEV-GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
.|+. |+++.+..... ........||+.|+|||++. ...+++++|||||||++|||+| |+ |
T Consensus 149 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~il~ellt~g~~p 213 (287)
T 1u59_A 149 AKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECIN---------------FRKFSSRSDVWSYGVTMWEALSYGQKP 213 (287)
T ss_dssp EEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHH---------------HCEECHHHHHHHHHHHHHHHHTTSCCT
T ss_pred EEECcccceeeeccCcceeeccccccccccccCHHHhc---------------cCCCCchhhHHHHHHHHHHHHcCCCCC
Confidence 4555 45555533322 11234566899999999982 2456789999999999999999 99 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhhc
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~~ 167 (552)
|.......+. ..+... ...........+.+++.+||+.+|.+||++.++.+.+..++.
T Consensus 214 ~~~~~~~~~~---------------------~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~ 272 (287)
T 1u59_A 214 YKKMKGPEVM---------------------AFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYY 272 (287)
T ss_dssp TTTCCTHHHH---------------------HHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cccCCHHHHH---------------------HHHhcCCcCCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 9654322110 000000 001112234469999999999999999999999998888763
|
| >1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-13 Score=134.01 Aligned_cols=45 Identities=27% Similarity=0.587 Sum_probs=39.1
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchH
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTK 91 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~ 91 (552)
.+...||+.|||||++ .+ ..+++++|||||||+||||++|+ ||..
T Consensus 191 ~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~~g~~pf~~ 236 (339)
T 1z57_A 191 HSTLVSTRHYRAPEVI------LA---------LGWSQPCDVWSIGCILIEYYLGFTVFPT 236 (339)
T ss_dssp CCSSCSCGGGCCHHHH------TT---------SCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred cccccCCccccChHHh------hC---------CCCCcchhhHHHHHHHHHHHhCCCCCCC
Confidence 4567899999999999 32 45778999999999999999999 9954
|
| >2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=9.5e-14 Score=134.54 Aligned_cols=116 Identities=14% Similarity=0.220 Sum_probs=74.3
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+++.+.... ......||+.|+|||++... ....++.++|||||||+||+|++|+ ||
T Consensus 155 ~~kl~Dfg~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~------------~~~~~~~~~Di~slG~il~~l~~g~~pf 219 (322)
T 2ycf_A 155 LIKITDFGHSKILGETS---LMRTLCGTPTYLAPEVLVSV------------GTAGYNRAVDCWSLGVILFICLSGYPPF 219 (322)
T ss_dssp CEEECCCTTCEECCCCH---HHHHHHSCCTTCCHHHHHHT------------TTTTCTTHHHHHHHHHHHHHHHHSSCSS
T ss_pred eEEEccCccceeccccc---ccccccCCcCccCchhhccC------------CCCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence 35565 5565554443 25677899999999998321 1245678999999999999999999 99
Q ss_pred hHHHhh-hhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELID-YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
...... .+. ..+..................+.+++.+||+.+|.+||++.++.+
T Consensus 220 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 220 SEHRTQVSLK-----------------DQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp CSTTCSSCHH-----------------HHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred cccchHHHHH-----------------HHHHhCccccCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 653321 000 000000000001111223445899999999999999999887654
|
| >2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-13 Score=133.78 Aligned_cols=127 Identities=15% Similarity=0.209 Sum_probs=65.5
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++..... .+...||+.|+|||++ .+ ...++.++|||||||+||||++|+ ||.
T Consensus 171 ~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~ell~g~~pf~ 231 (367)
T 2fst_X 171 LKILDFGLARHTADE-----MTGYVATRWYRAPEIM------LN--------WMHYNQTVDIWSVGCIMAELLTGRTLFP 231 (367)
T ss_dssp EEECC--------------------CCCTTCCHHHH------TT--------CCSCCTTHHHHHHHHHHHHHHHSSCSCC
T ss_pred EEEeecccccccccc-----CCCcCcCcCccChHHH------cC--------CcCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence 4455 555554433 5678999999999998 22 245678999999999999999999 996
Q ss_pred HHHhh-hhh---hccccCCCchhhhhhhhHHHHHHHHHHH-------hhhhcCccccHHHHHHhhcccCCCCCcchhhHH
Q 008820 91 KELID-YIR---CVSTKASDDNIACLGMYMAWMEKVTYLL-------ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVW 159 (552)
Q Consensus 91 ~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~ 159 (552)
+.... .+. ...+...+.-+.... ...........+ ........+.+.+++.+||+.+|.+||++.++.
T Consensus 232 ~~~~~~~l~~i~~~~g~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L 310 (367)
T 2fst_X 232 GTDHIDQLKLILRLVGTPGAELLKKIS-SESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQAL 310 (367)
T ss_dssp CSSHHHHHHHHHHHHCSCCHHHHTTCC-CHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCHHHHHHhh-hHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHh
Confidence 53322 111 000100000000000 000000000000 001112344588999999999999999988765
Q ss_pred H
Q 008820 160 K 160 (552)
Q Consensus 160 ~ 160 (552)
+
T Consensus 311 ~ 311 (367)
T 2fst_X 311 A 311 (367)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-13 Score=135.05 Aligned_cols=128 Identities=13% Similarity=0.091 Sum_probs=74.1
Q ss_pred hhhcc--cccccccccch--hhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-
Q 008820 13 VAKVG--CVGSRICDKEV--GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~--~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~- 87 (552)
.+|+. |+++.+..... ........||+.|||||++ .| ...+++++|||||||+||||+||+
T Consensus 162 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~ell~g~~ 227 (351)
T 3mi9_A 162 VLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELL------LG--------ERDYGPPIDLWGAGCIMAEMWTRSP 227 (351)
T ss_dssp CEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHH------TT--------CCSCCTHHHHHHHHHHHHHHHHSSC
T ss_pred CEEEccchhcccccccccccccccCCcccccCccCchhh------cC--------CCCCCcHhHHHHHHHHHHHHHhCCC
Confidence 35555 55555432211 1224667899999999998 22 234678999999999999999999
Q ss_pred CchHHHhhhh----hhccccCCCchhhhhhh-------------hHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCC
Q 008820 88 QFTKELIDYI----RCVSTKASDDNIACLGM-------------YMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPG 150 (552)
Q Consensus 88 pf~~~~~~~~----~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~ 150 (552)
||.+.....+ ........+..|..... ........... ...+.+.+++.+||+.+|.
T Consensus 228 pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~li~~~L~~dP~ 301 (351)
T 3mi9_A 228 IMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAY------VRDPYALDLIDKLLVLDPA 301 (351)
T ss_dssp SCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHH------HCCHHHHHHHHHHSCSSGG
T ss_pred CCCCCChHHHHHHHHHHhCCCChhhccccccchhhcccccccccccCHHHHhhhc------cCChHHHHHHHHHhcCChh
Confidence 9965432211 11111111111110000 00000100000 0123488999999999999
Q ss_pred CCcchhhHHH
Q 008820 151 CRPLLTNVWK 160 (552)
Q Consensus 151 ~R~~~~~~~~ 160 (552)
+||++.++.+
T Consensus 302 ~R~t~~e~l~ 311 (351)
T 3mi9_A 302 QRIDSDDALN 311 (351)
T ss_dssp GSCCHHHHHT
T ss_pred hCCCHHHHhC
Confidence 9999887665
|
| >1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-13 Score=133.98 Aligned_cols=132 Identities=17% Similarity=0.195 Sum_probs=75.1
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|++ |+++.+..... ..+...||+.|||||++ .| ...++.++|||||||+||||++|. ||
T Consensus 150 ~~kl~Dfg~a~~~~~~~~--~~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~ell~g~~~~ 213 (346)
T 1ua2_A 150 VLKLADFGLAKSFGSPNR--AYTHQVVTRWYRAPELL------FG--------ARMYGVGVDMWAVGCILAELLLRVPFL 213 (346)
T ss_dssp CEEECCCGGGSTTTSCCC--CCCCSCCCCTTCCHHHH------TT--------CSCCCHHHHHHHHHHHHHHHHHSSCSS
T ss_pred CEEEEecccceeccCCcc--cCCcccccccccCchHh------hC--------CCCCCchhhhHhHHHHHHHHHHCCCCC
Confidence 34565 55665544332 25677899999999998 22 233678999999999999999999 88
Q ss_pred hHHHhhhh-h---hccccCCCchhhhh-hhhHHH-HHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYI-R---CVSTKASDDNIACL-GMYMAW-MEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~-~---~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+...... . .......+..|... ..+... ....+..+ ..........+.+++.+||+.+|.+||++.++.+
T Consensus 214 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 291 (346)
T 1ua2_A 214 PGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK 291 (346)
T ss_dssp CCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhc
Confidence 55332211 1 00011111111000 000000 00000000 0011223345899999999999999999887665
|
| >1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-13 Score=137.80 Aligned_cols=117 Identities=21% Similarity=0.207 Sum_probs=74.0
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
.+|+. |+++.+...... ......||+.|||||++. ...++.++|||||||+||||+| |+ |
T Consensus 318 ~~kl~DfG~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~---------------~~~~~~~sDvwslG~~l~el~t~g~~P 381 (452)
T 1fmk_A 318 VCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAAL---------------YGRFTIKSDVWSFGILLTELTTKGRVP 381 (452)
T ss_dssp CEEECCCCTTC---------------CCGGGSCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTTCCS
T ss_pred CEEECCCccceecCCCcee-cccCCcccccccCHhHHh---------------cCCCCccccHHhHHHHHHHHHhCCCCC
Confidence 45666 667666544322 245667899999999982 2456789999999999999999 89 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|.+.....+. ..+... ..+........+.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 382 ~~~~~~~~~~---------------------~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~ 439 (452)
T 1fmk_A 382 YPGMVNREVL---------------------DQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF 439 (452)
T ss_dssp STTCCHHHHH---------------------HHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTT
T ss_pred CCCCCHHHHH---------------------HHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHh
Confidence 9764332110 000000 00011123445899999999999999999999999888765
|
| >1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-13 Score=130.11 Aligned_cols=117 Identities=14% Similarity=0.136 Sum_probs=76.1
Q ss_pred hhcc--cccccccccchh-hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 14 AKVG--CVGSRICDKEVG-LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
.|+. |+++.+...... .......||+.|+|||++. ...+++++|||||||+||+|+| |+ |
T Consensus 156 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~il~~l~~~g~~p 220 (291)
T 1xbb_A 156 AKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECIN---------------YYKFSSKSDVWSFGVLMWEAFSYGQKP 220 (291)
T ss_dssp EEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHH---------------HCEEEHHHHHHHHHHHHHHHHTTTCCS
T ss_pred EEEccCCcceeeccCCCcccccccCCCCceeeChHHhc---------------cCCCChhhhHHHHHHHHHHHHhcCCCC
Confidence 4555 455554433221 1234456789999999992 2446689999999999999999 99 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|.......+. ..+... ...........+.+++.+||+.+|.+||++.++.+.+..++
T Consensus 221 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~ 278 (291)
T 1xbb_A 221 YRGMKGSEVT---------------------AMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYY 278 (291)
T ss_dssp STTCCHHHHH---------------------HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHH---------------------HHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 9764333110 000000 00111223445999999999999999999999999988875
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-10 Score=107.17 Aligned_cols=236 Identities=13% Similarity=0.083 Sum_probs=161.8
Q ss_pred CCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCC-C
Q 008820 305 QPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHK-S 383 (552)
Q Consensus 305 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~-~ 383 (552)
..++++++.|+.|.+||.++++....+..... .......+.++|++++ +.++.|+.||. +++.++.+..+. .
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~----~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG----WECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTT----CCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc----CCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence 35889999999999999987765544443210 0112346788999888 45678999998 899999998653 4
Q ss_pred CeEEEEEe-C-CEEEEEeC-CCcEEEEECCCCceeEEEecCCC-----CceEEEEEEcCCCCEEEEEECCCcEEEEeC-C
Q 008820 384 AVSTLAVC-N-GVLYSGSR-DGTIRLWSLSDHSLLTVLEEDSS-----GAVSSVLSLTAVQHTLVVSHESGSIKVWRN-D 454 (552)
Q Consensus 384 ~v~~l~~~-~-~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~-~ 454 (552)
.+.++.+. + +.+++.+. ++.|..+|. +++.+..+..... ..... +...++|+++++...++.|..||. +
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~-v~~~~~G~~lv~~~~~~~v~~~d~~G 155 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQ-INKNKKGNYLVPLFATSEVREIAPNG 155 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSC-CEECTTSCEEEEETTTTEEEEECTTS
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccC-ceECCCCCEEEEecCCCEEEEECCCC
Confidence 67888887 3 47777776 788888885 7888877764211 01112 467899999999999999999995 4
Q ss_pred cceeeeecccceEEEEE--ecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCc-ccCcceEEEEEe-CCeEEEEeCCC-
Q 008820 455 KFMKSMQTHKGSVFAVF--LEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAI-PCGSVITALLYW-QGKLFVGCADR- 529 (552)
Q Consensus 455 ~~~~~~~~h~~~v~~v~--~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~v~~l~~~-~~~l~s~s~Dg- 529 (552)
+.+..+..+.. ..++. ++|+.+++++.++.|..+|..+++....+...... .....+..+... ++.++.++.+|
T Consensus 156 ~~~w~~~~~~~-~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~ 234 (276)
T 3no2_A 156 QLLNSVKLSGT-PFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGH 234 (276)
T ss_dssp CEEEEEECSSC-CCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTT
T ss_pred CEEEEEECCCC-ccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCc
Confidence 55555554322 22333 48899999998889999999988887766532110 012235666665 45566555433
Q ss_pred --------eEEEEEecCCcceeEEEeccc
Q 008820 530 --------TVKIALCNRQIPEIFSLLLHI 550 (552)
Q Consensus 530 --------~v~iw~~~~~~~~~~~~~gh~ 550 (552)
..++++++++++.+.++..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~g~~~W~~~~~~ 263 (276)
T 3no2_A 235 DREAGKGKHPQLVEIDSEGKVVWQLNDKV 263 (276)
T ss_dssp CTTGGGSCCCSEEEECTTSBEEEEECCTT
T ss_pred cccccccCCceEEEECCCCCEEEEecCcc
Confidence 457888887888887776654
|
| >4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-13 Score=134.30 Aligned_cols=127 Identities=15% Similarity=0.144 Sum_probs=70.2
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
+|+. |+++..... .+...||+.|||||++ .+ ...++.++|||||||+||+|++|+ ||.
T Consensus 183 ~kL~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~el~~g~~pf~ 243 (371)
T 4exu_A 183 LKILDFGLARHADAE-----MTGYVVTRWYRAPEVI------LS--------WMHYNQTVDIWSVGCIMAEMLTGKTLFK 243 (371)
T ss_dssp EEECSTTCC-------------CTTCCCTTSCHHHH------SC--------CSCCCTTHHHHHHHHHHHHHHHSSCSCC
T ss_pred EEEEecCcccccccC-----cCCcccCccccCHHHh------cC--------CCCCCcHHhHHHHHHHHHHHHhCCCCCC
Confidence 4555 455544333 5678899999999998 22 245678999999999999999999 996
Q ss_pred HHHhhhh----hhccccCCCchhhhhhhhHHHHHHHHHHH-------hhhhcCccccHHHHHHhhcccCCCCCcchhhHH
Q 008820 91 KELIDYI----RCVSTKASDDNIACLGMYMAWMEKVTYLL-------ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVW 159 (552)
Q Consensus 91 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~ 159 (552)
+...... ...... .+..+................+ ..........+.+++.+||+.+|.+||++.++.
T Consensus 244 ~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell 322 (371)
T 4exu_A 244 GKDYLDQLTQILKVTGV-PGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQAL 322 (371)
T ss_dssp CSSHHHHHHHHHHHHCC-CCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHH
T ss_pred CCChHHHHHHHHHHhCC-CcHHHHHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHh
Confidence 5332211 100000 0000100000000000000000 001112345699999999999999999988765
Q ss_pred H
Q 008820 160 K 160 (552)
Q Consensus 160 ~ 160 (552)
+
T Consensus 323 ~ 323 (371)
T 4exu_A 323 T 323 (371)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-13 Score=135.82 Aligned_cols=120 Identities=19% Similarity=0.170 Sum_probs=69.3
Q ss_pred hhhcc--cccccccccchh-hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-
Q 008820 13 VAKVG--CVGSRICDKEVG-LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~- 87 (552)
.+|+. |+++.+...... .......||+.|||||++. ...+++++|||||||+||||++ |+
T Consensus 185 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Dv~SlG~il~ellt~g~~ 249 (373)
T 2qol_A 185 VCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIA---------------YRKFTSASDVWSYGIVLWEVMSYGER 249 (373)
T ss_dssp CEEECCC----------------------CTTSCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTC-C
T ss_pred CEEECcCccccccccCCccceeccCCCcCCCccChhhhc---------------cCCcCchhcHHHHHHHHHHHHhCCCC
Confidence 45666 556655543221 1133445688999999992 2456789999999999999998 99
Q ss_pred CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
||.......+. ..+... ..+........+.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 250 P~~~~~~~~~~---------------------~~i~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~ 308 (373)
T 2qol_A 250 PYWEMSNQDVI---------------------KAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLI 308 (373)
T ss_dssp TTTTCCHHHHH---------------------HHHHTTEECCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHH---------------------HHHHcCCCCCCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHH
Confidence 99653322110 000000 00111123445899999999999999999999999998876
Q ss_pred cC
Q 008820 167 IK 168 (552)
Q Consensus 167 ~~ 168 (552)
..
T Consensus 309 ~~ 310 (373)
T 2qol_A 309 RN 310 (373)
T ss_dssp HC
T ss_pred hC
Confidence 44
|
| >2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-13 Score=132.22 Aligned_cols=110 Identities=17% Similarity=0.170 Sum_probs=72.5
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....||+.|+|||++ .+...........+++++|||||||++|||++|+ ||.......+.
T Consensus 191 ~~~~~g~~~y~aPE~~------~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~------------ 252 (319)
T 2y4i_B 191 LRIQNGWLCHLAPEII------RQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAII------------ 252 (319)
T ss_dssp CBCCSGGGGTSCHHHH------SCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHH------------
T ss_pred cccCCCcccccChHHh------hhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH------------
Confidence 4456799999999999 3321111112345678999999999999999999 99764333110
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
...... ..+.........++.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 253 -----~~~~~~--~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~ 301 (319)
T 2y4i_B 253 -----WQMGTG--MKPNLSQIGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLP 301 (319)
T ss_dssp -----HHHHTT--CCCCCCCSSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC-
T ss_pred -----HHhccC--CCCCCCcCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHH
Confidence 000000 0000001123446999999999999999999999999888765
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-09 Score=116.80 Aligned_cols=234 Identities=8% Similarity=-0.032 Sum_probs=150.7
Q ss_pred CCCCeEEEEEecCCCCEEEEEcCCC----cEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCc---
Q 008820 291 HDHKVMAVVYVDEDQPLCISGDSGG----GIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT--- 363 (552)
Q Consensus 291 h~~~v~~v~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~--- 363 (552)
|...+..++|+|++..++++.+.+| .|++||+.+++....... . ......+++|||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~--~----~~~~~~~wspDg~~l~~~~~~~~~~~ 196 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--R----VKFSCMAWTHDGKGMFYNAYPQQDGK 196 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--E----ECSCCEEECTTSSEEEEEECCCCSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc--C----cccceEEEEeCCCEEEEEEECCcccc
Confidence 4446889999998886666655444 899999987654321111 0 11123578999999998888766
Q ss_pred -------------EEEEECCCCce--eEEe--cCCCCCeEEEEEe-CC-EEEEEeC-----CCcEEEEECCC------Cc
Q 008820 364 -------------IKAWSLLDGTL--SCTM--SGHKSAVSTLAVC-NG-VLYSGSR-----DGTIRLWSLSD------HS 413 (552)
Q Consensus 364 -------------i~iwd~~~~~~--~~~~--~~h~~~v~~l~~~-~~-~l~s~~~-----dg~i~iwd~~~------~~ 413 (552)
|++|++.+++. ...+ ..|...+..+.|+ ++ +|+.++. +..|++||+.+ +.
T Consensus 197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 276 (710)
T 2xdw_A 197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI 276 (710)
T ss_dssp CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred ccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc
Confidence 99999988763 2222 3355667889999 43 6666554 67899999986 43
Q ss_pred -eeEEEecCCCCceEEEEEEcCCCCEEEEEECC----CcEEEEeCCcc----eeeeecccc--eEEEEEe--cCCEEEEE
Q 008820 414 -LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES----GSIKVWRNDKF----MKSMQTHKG--SVFAVFL--EGKWLFTG 480 (552)
Q Consensus 414 -~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d----g~i~iwd~~~~----~~~~~~h~~--~v~~v~~--~~~~l~sg 480 (552)
....+..+... .. ..++++|+.|+..+.. +.|.+||.... ...+..|.. .+..+.+ ++.++++.
T Consensus 277 ~~~~~l~~~~~~-~~--~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~ 353 (710)
T 2xdw_A 277 LKWVKLIDNFEG-EY--DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353 (710)
T ss_dssp CCCEEEECSSSS-CE--EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred cceEEeeCCCCc-EE--EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEE
Confidence 34555544333 23 2577888888776653 35999997643 255555544 6766776 45567778
Q ss_pred eCCCe--EEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-C-eEE-EEe---CCCeEEEEEecC
Q 008820 481 GWDKT--VSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-G-KLF-VGC---ADRTVKIALCNR 538 (552)
Q Consensus 481 s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~-~l~-s~s---~Dg~v~iw~~~~ 538 (552)
..|+. |++||+.+++....+... ...+..+++++ + .++ +.+ ..+.|+.||+..
T Consensus 354 ~~~g~~~l~~~~~~~g~~~~~l~~~-----~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 354 LHDVKNTLQLHDLATGALLKIFPLE-----VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp EETTEEEEEEEETTTCCEEEEECCC-----SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred EECCEEEEEEEECCCCCEEEecCCC-----CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 88875 566777555443333221 44577888874 2 344 333 357899999863
|
| >3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-13 Score=130.22 Aligned_cols=117 Identities=14% Similarity=0.175 Sum_probs=79.7
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
+|+. |+++.+..... .......||+.|+|||++. ...+++++|||||||++|+|++ |+ ||
T Consensus 150 ~~l~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~il~~ll~~g~~p~ 213 (288)
T 3kfa_A 150 VKVADFGLSRLMTGDTY-TAHAGAKFPIKWTAPESLA---------------YNKFSIKSDVWAFGVLLWEIATYGMSPY 213 (288)
T ss_dssp EEECCCCGGGTSCSSSS-EEETTEEECGGGCCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred EEEccCccceeccCCcc-ccccCCccccCcCChhhhc---------------cCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence 4555 44555443332 2345677899999999992 2456789999999999999999 88 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhhc
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~~ 167 (552)
.......+. ...... ...........+.+++.+||+.+|.+||++.++.+.+..+..
T Consensus 214 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~ 271 (288)
T 3kfa_A 214 PGIDLSQVY---------------------ELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ 271 (288)
T ss_dssp TTCCGGGHH---------------------HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHH---------------------HHHhccCCCCCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHH
Confidence 764433111 000000 001112234458999999999999999999999998887763
|
| >3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=4.3e-13 Score=130.78 Aligned_cols=131 Identities=13% Similarity=0.171 Sum_probs=73.2
Q ss_pred hhhcc--cccccccccchh--hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhC--
Q 008820 13 VAKVG--CVGSRICDKEVG--LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG-- 86 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~--~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg-- 86 (552)
.+|+. |+++.+...... .......||+.|||||++...... .....+.++|||||||+||||+||
T Consensus 180 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~---------~~~~~~~~~DiwslG~il~el~tg~~ 250 (337)
T 3mdy_A 180 TCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNR---------NHFQSYIMADMYSFGLILWEVARRCV 250 (337)
T ss_dssp CEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCT---------TCTHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred CEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCC---------ccccCccccchHHHHHHHHHHHhccC
Confidence 35666 555554443321 112366899999999999211000 011122359999999999999999
Q ss_pred --------C-CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHH------HHHhhh-hcCccccHHHHHHhhcccCCC
Q 008820 87 --------E-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVT------YLLENK-FGSEFVSLQLMFCQCLNFDPG 150 (552)
Q Consensus 87 --------~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~l~~~~~~~l~~~p~ 150 (552)
+ ||....... ........... ..+... .......+.+++.+||+.+|.
T Consensus 251 ~~~~~~~~~~p~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~ 314 (337)
T 3mdy_A 251 SGGIVEEYQLPYHDLVPSD----------------PSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPA 314 (337)
T ss_dssp BTTBCCCCCCTTTTTSCSS----------------CCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGG
T ss_pred cccccccccccHhhhcCCC----------------CchhhhHHHHhhhccCccccccchhhHHHHHHHHHHHHhhhhChh
Confidence 5 553311110 00000101000 000000 001122388999999999999
Q ss_pred CCcchhhHHHHHHhhhcC
Q 008820 151 CRPLLTNVWKCIRELIIK 168 (552)
Q Consensus 151 ~R~~~~~~~~~l~~~~~~ 168 (552)
+||++.++.+.+..+...
T Consensus 315 ~Rps~~ell~~L~~l~~~ 332 (337)
T 3mdy_A 315 SRLTALRVKKTLAKMSES 332 (337)
T ss_dssp GSCCHHHHHHHHHHHHHT
T ss_pred hCCCHHHHHHHHHHHHhh
Confidence 999999999999988644
|
| >3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.4e-14 Score=140.41 Aligned_cols=110 Identities=11% Similarity=-0.012 Sum_probs=72.7
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
+|+. |+++..... .....| +.|||||++......-| ......++.++|||||||+||||+||+ ||.
T Consensus 250 ~kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~~~~~~~~-----~~~~~~~~~~~DvwSlGvil~elltg~~Pf~ 318 (413)
T 3dzo_A 250 VFLTGFEHLVRDGAS-----AVSPIG-RGFAPPETTAERMLPFG-----QHHPTLMTFAFDTWTLGLAIYWIWCADLPNT 318 (413)
T ss_dssp EEECCGGGCEETTEE-----ECCCCC-TTTCCHHHHHHHTSTTG-----GGCCEEECHHHHHHHHHHHHHHHHHSSCCCC
T ss_pred EEEEeccceeecCCc-----cccCCC-CceeCchhhhccccccc-----cccCcCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence 6666 666655544 566788 99999999943210000 001245678999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVW 159 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~ 159 (552)
......+. ... .........++.+++.+||+.+|.+||++.++.
T Consensus 319 ~~~~~~~~-----------------~~~--------~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~~l 362 (413)
T 3dzo_A 319 DDAALGGS-----------------EWI--------FRSCKNIPQPVRALLEGFLRYPKEDRLLPLQAM 362 (413)
T ss_dssp TTGGGSCS-----------------GGG--------GSSCCCCCHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred CcchhhhH-----------------HHH--------HhhcccCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 75543111 000 000011233589999999999999999987653
|
| >2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-13 Score=135.94 Aligned_cols=114 Identities=13% Similarity=0.055 Sum_probs=70.3
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|++ |+++.+...... -...++||+.|||||++....... ....++.++|+|||||+||||++|+ ||.
T Consensus 201 vkL~DFGla~~~~~~~~~-~~~~~~Gt~~Y~APE~l~~~~~~~--------~~~~~~~~~DiwSlGvilyelltG~~Pf~ 271 (412)
T 2vd5_A 201 IRLADFGSCLKLRADGTV-RSLVAVGTPDYLSPEILQAVGGGP--------GTGSYGPECDWWALGVFAYEMFYGQTPFY 271 (412)
T ss_dssp EEECCCTTCEECCTTSCE-ECSSCCSCGGGCCHHHHHHHHTCT--------TCSEECTHHHHHHHHHHHHHHHHSSCTTC
T ss_pred EEEeechhheeccCCCcc-ccceeccccCcCCHHHHhhcccCc--------CCCCCChHHhhhHHhHHHHHHHhCCCCCC
Confidence 5566 667666544321 134578999999999994332211 1245778999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhh-hhcCccccHHHHHHhhcccCCCCCcc
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLEN-KFGSEFVSLQLMFCQCLNFDPGCRPL 154 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~~p~~R~~ 154 (552)
..+...+ +..+.........+ .......++.+++.+||. +|.+|+.
T Consensus 272 ~~~~~~~-----------------~~~i~~~~~~~~~p~~~~~~s~~~~dli~~lL~-~p~~Rlg 318 (412)
T 2vd5_A 272 ADSTAET-----------------YGKIVHYKEHLSLPLVDEGVPEEARDFIQRLLC-PPETRLG 318 (412)
T ss_dssp CSSHHHH-----------------HHHHHTHHHHCCCC----CCCHHHHHHHHTTSS-CGGGCTT
T ss_pred CCCHHHH-----------------HHHHHhcccCcCCCccccCCCHHHHHHHHHHcC-ChhhcCC
Confidence 6443311 11111100000000 012244569999999999 9999853
|
| >1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=3.6e-13 Score=130.98 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=72.7
Q ss_pred hhhcc--cccccccccch-hhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-
Q 008820 13 VAKVG--CVGSRICDKEV-GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~- 87 (552)
..|+. |+++.+..... ........||+.|||||++ . ...++.++|||||||+||||++ |+
T Consensus 185 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~il~ellt~g~~ 249 (333)
T 1mqb_A 185 VCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAI------S---------YRKFTSASDVWSFGIVMWEVMTYGER 249 (333)
T ss_dssp CEEECCCCC-----------------CCCGGGSCHHHH------H---------SCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred cEEECCCCcchhhccccccccccCCCCccccccCchhc------c---------cCCCCchhhhHHHHHHHHHHHcCCCC
Confidence 34555 55555544322 1123455679999999998 2 2456789999999999999999 99
Q ss_pred CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
||.......+. ..+... ...........+.+++.+||+.+|.+||++.++.+.+.++.
T Consensus 250 pf~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~ 308 (333)
T 1mqb_A 250 PYWELSNHEVM---------------------KAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLI 308 (333)
T ss_dssp TTTTCCHHHHH---------------------HHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred CcccCCHHHHH---------------------HHHHCCCcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 99653322110 000000 00011123445899999999999999999999999988876
Q ss_pred c
Q 008820 167 I 167 (552)
Q Consensus 167 ~ 167 (552)
.
T Consensus 309 ~ 309 (333)
T 1mqb_A 309 R 309 (333)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-13 Score=133.81 Aligned_cols=112 Identities=17% Similarity=0.167 Sum_probs=72.1
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.+|+. |+++.+.. .....||+.|||||++... ....++.++|||||||+||||++|+ ||
T Consensus 192 ~~kL~DfG~a~~~~~------~~~~~gt~~y~aPE~~~~~------------~~~~~~~~~DiwslG~il~ell~g~~p~ 253 (348)
T 1u5q_A 192 LVKLGDFGSASIMAP------ANSFVGTPYWMAPEVILAM------------DEGQYDGKVDVWSLGITCIELAERKPPL 253 (348)
T ss_dssp EEEECCCTTCBSSSS------BCCCCSCGGGCCHHHHHTT------------SSCCBCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred CEEEeeccCceecCC------CCcccCCcceeCHhhhccc------------cCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence 35555 45554433 2456899999999998210 1245678999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
......... ...... ..+..........+.+++.+||+.+|.+||++.++.+.
T Consensus 254 ~~~~~~~~~-----------------~~~~~~--~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h 306 (348)
T 1u5q_A 254 FNMNAMSAL-----------------YHIAQN--ESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKH 306 (348)
T ss_dssp TTSCHHHHH-----------------HHHHHS--CCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred CCCChHHHH-----------------HHHHhc--CCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence 653322100 000000 00000111234458899999999999999998876653
|
| >1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-13 Score=131.50 Aligned_cols=118 Identities=14% Similarity=0.186 Sum_probs=74.4
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+..... .....||+.|+|||++...... ....++.++|||||||+||+|++|+ ||.
T Consensus 163 ~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~---------~~~~~~~~~Di~slG~~l~~l~~g~~p~~ 230 (298)
T 1phk_A 163 IKLTDFGFSCQLDPGEK---LREVCGTPSYLAPEIIECSMND---------NHPGYGKEVDMWSTGVIMYTLLAGSPPFW 230 (298)
T ss_dssp EEECCCTTCEECCTTCC---BCCCCSCGGGCCHHHHHHHHCT---------TSCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred EEEecccchhhcCCCcc---cccccCCccccCHHHhcccccc---------ccccCCcccccHhHHHHHHHHHHCCCCCc
Confidence 4555 44555444332 4567899999999999543322 1245678999999999999999999 995
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
......+. ..+.......+.+........+.+++.+||+.+|.+||++.++.+
T Consensus 231 ~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 231 HRKQMLML-----------------RMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp CSSHHHHH-----------------HHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred CccHHHHH-----------------HHHhcCCcccCcccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 53322110 000000000011111123345899999999999999999887654
|
| >1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-13 Score=139.81 Aligned_cols=119 Identities=13% Similarity=0.177 Sum_probs=82.1
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~- 87 (552)
..+|+. |+++.+..... .......||+.|||||++. ...++.++|||||||+||||+| |+
T Consensus 355 ~~~kl~DFG~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~---------------~~~~~~~sDvwSlG~~l~el~t~g~~ 418 (495)
T 1opk_A 355 HLVKVADFGLSRLMTGDTY-TAHAGAKFPIKWTAPESLA---------------YNKFSIKSDVWAFGVLLWEIATYGMS 418 (495)
T ss_dssp GCEEECCTTCEECCTTCCE-ECCTTCCCCGGGCCHHHHH---------------HCEECHHHHHHHHHHHHHHHHTTSCC
T ss_pred CcEEEeecccceeccCCce-eecCCCcCCcceeCHhHHh---------------cCCCCcHHhHHhHHHHHHHHHhCCCC
Confidence 346666 66766654432 1345667889999999992 2456789999999999999999 88
Q ss_pred CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
||.......+. ..+... ...........+.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 419 p~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~ 477 (495)
T 1opk_A 419 PYPGIDLSQVY---------------------ELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMF 477 (495)
T ss_dssp SSTTCCGGGHH---------------------HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred CCCCCCHHHHH---------------------HHHHcCCCCCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHH
Confidence 99764433111 000000 00111123445899999999999999999999999888765
Q ss_pred c
Q 008820 167 I 167 (552)
Q Consensus 167 ~ 167 (552)
.
T Consensus 478 ~ 478 (495)
T 1opk_A 478 Q 478 (495)
T ss_dssp S
T ss_pred h
Confidence 3
|
| >3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-13 Score=133.30 Aligned_cols=133 Identities=13% Similarity=0.111 Sum_probs=80.4
Q ss_pred hhcc--cccccccccch-hhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 14 AKVG--CVGSRICDKEV-GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.|+. |+++.+..... ........||+.|||||++. ...+++++|||||||++|+|++|+ ||
T Consensus 166 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~il~~ll~g~~p~ 230 (327)
T 3lxl_A 166 VKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLS---------------DNIFSRQSDVWSFGVVLYELFTYCDKS 230 (327)
T ss_dssp EEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHH---------------HCEEEHHHHHHHHHHHHHHHHTTTCGG
T ss_pred EEEcccccceecccCCccceeeccCCccccccCHHHhc---------------cCCCChHHhHHHHHHHHHHHHhCCCCC
Confidence 4555 45554433222 12345567999999999982 245678999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhhc
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~~ 167 (552)
.......+........ . ............. ...........+.+++.+||+.+|.+||++.++.+.+..++.
T Consensus 231 ~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~ 303 (327)
T 3lxl_A 231 CSPSAEFLRMMGCERD-----V-PALSRLLELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWS 303 (327)
T ss_dssp GSHHHHHHHHCC---------C-CHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC--
T ss_pred ccccchhhhhcccccc-----c-ccHHHHHHHhhcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 6654432211000000 0 0001111111000 011112234569999999999999999999999999988763
|
| >2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-13 Score=130.47 Aligned_cols=94 Identities=20% Similarity=0.260 Sum_probs=66.0
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....||+.|+|||++ . ...+++++|||||||++|+|++|+ ||.......+
T Consensus 173 ~~~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~------------- 224 (279)
T 2w5a_A 173 AKTFVGTPYYMSPEQM------N---------RMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKEL------------- 224 (279)
T ss_dssp HHHHHSCCTTCCHHHH------H---------CC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-------------
T ss_pred ccccCCCccccChHHh------c---------cCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHHH-------------
Confidence 4567899999999998 2 245678999999999999999999 9966432211
Q ss_pred hhhhhHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 111 CLGMYMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
...+.... .........++.+++.+||+.+|.+||++.++.+.
T Consensus 225 --------~~~i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~ 268 (279)
T 2w5a_A 225 --------AGKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILEN 268 (279)
T ss_dssp --------HHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred --------HHHHhhcccccCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhC
Confidence 01110000 01111234459999999999999999998886653
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.8e-10 Score=119.75 Aligned_cols=236 Identities=11% Similarity=0.037 Sum_probs=145.5
Q ss_pred CCCCCeEEEEEecCCCCEEEEEcC----CCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCc--
Q 008820 290 GHDHKVMAVVYVDEDQPLCISGDS----GGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT-- 363 (552)
Q Consensus 290 ~h~~~v~~v~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~-- 363 (552)
+|...+.+++|+|++..++++.+. +..|++||+.+++.... ....... ....+++++|+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~~~----~~~~~wspDg~~l~~~~~d~~~~ 192 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVIEGGK----YATPKWTPDSKGFYYEWLPTDPS 192 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCBSCCT----TCCCEECTTSSEEEEEECCCCTT
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-cccCccc----ccceEEecCCCEEEEEEecCCCC
Confidence 355578999999988866655543 45799999998764311 0111110 023479999999999888776
Q ss_pred -----------EEEEECCCCc----eeEEecCCCCCeEEEEEe-CC-EEEEEeCCC----cEEEEECCCCceeEEEecCC
Q 008820 364 -----------IKAWSLLDGT----LSCTMSGHKSAVSTLAVC-NG-VLYSGSRDG----TIRLWSLSDHSLLTVLEEDS 422 (552)
Q Consensus 364 -----------i~iwd~~~~~----~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~ 422 (552)
|++|++.+++ .+.....|...+.++.|+ ++ +|+.++.++ .|++||..+++. ..+..+.
T Consensus 193 ~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~ 271 (695)
T 2bkl_A 193 IKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGV 271 (695)
T ss_dssp SCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECS
T ss_pred CccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCC
Confidence 9999998876 333334455678899999 44 666666555 677777655543 3343333
Q ss_pred CCceEEEEEEcCCCCEEEEEE---CCCcEEEEeCCcce----eeeecc--cceEEEEEe-cCCEEEEEeCCCeEEEEecC
Q 008820 423 SGAVSSVLSLTAVQHTLVVSH---ESGSIKVWRNDKFM----KSMQTH--KGSVFAVFL-EGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 423 ~~~~~~~~~~s~~~~~l~~g~---~dg~i~iwd~~~~~----~~~~~h--~~~v~~v~~-~~~~l~sgs~dg~i~iwd~~ 492 (552)
... ... .+ +++.+++.+. .++.|.+||..... ..+..| ...+..+++ ++.++++...|+..++|.+.
T Consensus 272 ~~~-~~~-~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 272 GAK-YEV-HA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp SCC-EEE-EE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred Cce-EEE-Ee-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEe
Confidence 333 332 33 5666444433 25789999975432 444433 446777776 66778888899988888654
Q ss_pred -CCeeeeeeccCCCcccCcceEEEEEeC--CeEE-EEe---CCCeEEEEEecC
Q 008820 493 -GDEFEEDVIPTGAIPCGSVITALLYWQ--GKLF-VGC---ADRTVKIALCNR 538 (552)
Q Consensus 493 -~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~-s~s---~Dg~v~iw~~~~ 538 (552)
++.....+.. +....+..+++++ +.++ +.+ ..++|++||+..
T Consensus 349 ~~g~~~~~l~~----~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 349 LKGKPVRTVQL----PGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST 397 (695)
T ss_dssp TTCCEEEECCC----SSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred CCCCeeEEecC----CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 2322222211 1134566677764 2344 322 347899999863
|
| >3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-13 Score=134.46 Aligned_cols=116 Identities=14% Similarity=0.073 Sum_probs=77.5
Q ss_pred hhhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-
Q 008820 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (552)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~- 87 (552)
...+|+. |+|+.+.........+...||+.|||||++ .| ..+++++|||||||+||||+||+
T Consensus 219 ~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwslG~il~elltg~~ 283 (365)
T 3e7e_A 219 SAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEML------SN---------KPWNYQIDYFGVAATVYCMLFGTY 283 (365)
T ss_dssp CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHH------TT---------CCBSTHHHHHHHHHHHHHHHHSSC
T ss_pred cCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHh------cC---------CCCCccccHHHHHHHHHHHHhCCC
Confidence 3456666 677655533333346778999999999999 33 45789999999999999999999
Q ss_pred CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcc-hhhHHHHHHhhh
Q 008820 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL-LTNVWKCIRELI 166 (552)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~-~~~~~~~l~~~~ 166 (552)
||......... .... . ... .....+.+++.+||+.+|.+|++ +.++.+.+..++
T Consensus 284 pf~~~~~~~~~---~~~~------~--~~~--------------~~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l 338 (365)
T 3e7e_A 284 MKVKNEGGECK---PEGL------F--RRL--------------PHLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVF 338 (365)
T ss_dssp CCEEEETTEEE---ECSC------C--TTC--------------SSHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHH
T ss_pred ccccCCCCcee---echh------c--ccc--------------CcHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHH
Confidence 99553322000 0000 0 000 01113778999999999999965 566666666654
|
| >2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=9.9e-14 Score=132.04 Aligned_cols=111 Identities=19% Similarity=0.181 Sum_probs=71.5
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+..... .....||+.|+|||++ . +.+++++|||||||+||+|++|+ ||.
T Consensus 163 ~kL~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~------~----------~~~~~~~Di~slG~~l~~l~~g~~p~~ 223 (287)
T 2wei_A 163 IKIIDFGLSTCFQQNTK---MKDRIGTAYYIAPEVL------R----------GTYDEKCDVWSAGVILYILLSGTPPFY 223 (287)
T ss_dssp EEECSTTGGGTBCCCSS---CSCHHHHHTTCCHHHH------T----------TCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred EEEeccCcceeecCCCc---cccccCcccccChHHh------c----------CCCCCchhhHhHHHHHHHHHhCCCCCC
Confidence 4555 44444433322 3456799999999998 2 34678999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
......+. ..+.......+.+.......++.+++.+||+.+|.+||++.++.+
T Consensus 224 ~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 224 GKNEYDIL-----------------KRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (287)
T ss_dssp CSSHHHHH-----------------HHHHHCCCCCCSGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred CCCHHHHH-----------------HHHHcCCCCCCchhhhhcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence 54322110 000000000001111223445899999999999999999988766
|
| >3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-13 Score=128.56 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=72.6
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc-
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF- 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf- 89 (552)
+|+. |+++.+..... ..+...||+.|||||++ .+ ...++.++|||||||+||||++|. ||
T Consensus 140 ~kl~Dfg~~~~~~~~~~--~~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~~l~~~~~p~~ 203 (292)
T 3o0g_A 140 LKLANFGLARAFGIPVR--CYSAEVVTLWYRPPDVL------FG--------AKLYSTSIDMWSAGCIFAELANAGRPLF 203 (292)
T ss_dssp EEECCCTTCEECCSCCS--CCCSCCSCGGGCCHHHH------TT--------CSCCCTHHHHHHHHHHHHHHTTTSCCSC
T ss_pred EEEeecccceecCCccc--cccCCccccCCcChHHH------cC--------CCCcCchHHHHHHHHHHHHHHHcCCCCc
Confidence 4555 55655543322 25677899999999998 22 123678999999999999999999 75
Q ss_pred hHHHhh----hhhhccccCCCchhhhhhhhHHHHHH----HHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELID----YIRCVSTKASDDNIACLGMYMAWMEK----VTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
...... .+........+..|............ ..............++.+++.+||+.+|.+||++.++.+
T Consensus 204 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 282 (292)
T 3o0g_A 204 PGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ 282 (292)
T ss_dssp CCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCCCHHHHHHHHHHHhCCCChhhhhhhcccccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence 222211 11101111111111110000000000 000000011123345889999999999999999887655
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.2e-11 Score=119.12 Aligned_cols=228 Identities=6% Similarity=-0.089 Sum_probs=139.9
Q ss_pred EEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEE-------------------EEEecCCCCEEEEE----
Q 008820 257 GLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMA-------------------VVYVDEDQPLCISG---- 311 (552)
Q Consensus 257 ~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~-------------------v~~~~~~~~~l~s~---- 311 (552)
.+.|+ +++|+.++.++.|++||+.+++.......+...... +.|+|++..+++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence 36788 899999999999999999998877666655543222 23455554332222
Q ss_pred cCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEee-CCCEEEEeeCC------CcEEEEECCCCceeEEecCCC--
Q 008820 312 DSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT-SGRYLYTGSGD------RTIKAWSLLDGTLSCTMSGHK-- 382 (552)
Q Consensus 312 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sgs~d------g~i~iwd~~~~~~~~~~~~h~-- 382 (552)
..+..|.+||+.++...... ... .......++| +++.|+..+.+ ..|.+||+..++.. .+..+.
T Consensus 165 ~~~~~l~~~d~~~g~~~~~~----~~~--~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~ 237 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELEVIH----QDT--AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEG 237 (396)
T ss_dssp CCCEEEEEEETTTCCEEEEE----EES--SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTT
T ss_pred CCcceEEEEECCCCcEEeec----cCC--cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCC
Confidence 45678999998865432221 111 1112346788 67766665543 46889998766543 333332
Q ss_pred CCeEEEEEe-CC-EEEEEeCC-----CcEEEEECCCCceeEEEecCCCCceEEEEEEcC-CCCEEEEEE-----------
Q 008820 383 SAVSTLAVC-NG-VLYSGSRD-----GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA-VQHTLVVSH----------- 443 (552)
Q Consensus 383 ~~v~~l~~~-~~-~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~----------- 443 (552)
..+..+.|+ ++ .|+.++.+ +.|++||+.+++........ + .. ..|+| +++++++++
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~-~~--~~~s~~dg~~l~~~~~~~p~~~~~~~ 312 (396)
T 3c5m_A 238 ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--P-CS--HLMSNFDGSLMVGDGCDAPVDVADAD 312 (396)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--S-EE--EEEECSSSSEEEEEECCC--------
T ss_pred ccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--C-CC--CCccCCCCceEEEecCCcceeecccc
Confidence 357788999 44 56655543 44999999988765433322 2 22 57888 999888765
Q ss_pred -----CCCcEEEEeCCc-ceeeeecccce-----------E--EEEEecCCEEEEEeC-CCeEEEE--ecCCCee
Q 008820 444 -----ESGSIKVWRNDK-FMKSMQTHKGS-----------V--FAVFLEGKWLFTGGW-DKTVSVQ--ELAGDEF 496 (552)
Q Consensus 444 -----~dg~i~iwd~~~-~~~~~~~h~~~-----------v--~~v~~~~~~l~sgs~-dg~i~iw--d~~~~~~ 496 (552)
.++.|++||... ....+..+... + .+++++|+.|+..+. ++...+| |+.++..
T Consensus 313 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 313 SYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp --CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred ccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 347899999643 23444444431 2 244568988887765 4554444 5555443
|
| >2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-13 Score=132.44 Aligned_cols=109 Identities=18% Similarity=0.326 Sum_probs=72.4
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+..... ......||+.|||||++ . ...++.++|||||||+||+|++|+ ||.
T Consensus 180 ~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~------~---------~~~~~~~~Di~slG~il~~l~~g~~pf~ 242 (335)
T 2owb_A 180 VKIGDFGLATKVEYDGE--RKKVLCGTPNYIAPEVL------S---------KKGHSFEVDVWSIGCIMYTLLVGKPPFE 242 (335)
T ss_dssp EEECCCTTCEECCSTTC--CBCCCCSCCSSCCHHHH------H---------TSCBCTHHHHHHHHHHHHHHHHSSCTTC
T ss_pred EEEeeccCceecccCcc--cccccCCCccccCHHHh------c---------cCCCCchhhHHHHHHHHHHHHHCcCCCC
Confidence 4555 45555443222 24567899999999999 2 244568999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
....... ..................+.+++.+||+.+|.+||++.++.+
T Consensus 243 ~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 291 (335)
T 2owb_A 243 TSCLKET---------------------YLRIKKNEYSIPKHINPVAASLIQKMLQTDPTARPTINELLN 291 (335)
T ss_dssp CSSHHHH---------------------HHHHHHTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred CCCHHHH---------------------HHHHhcCCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 6433211 000000000111123345889999999999999999988765
|
| >1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B | Back alignment and structure |
|---|
Probab=99.33 E-value=7.6e-13 Score=128.38 Aligned_cols=129 Identities=16% Similarity=0.139 Sum_probs=73.9
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
+|+. |+++.+.... ......||+.|||||++ . ...++.++|||||||+||+|++|+ ||.
T Consensus 159 ~kl~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~il~~l~~g~~pf~ 220 (326)
T 1blx_A 159 IKLADFGLARIYSFQM---ALTSVVVTLWYRAPEVL------L---------QSSYATPVDLWSVGCIFAEMFRRKPLFR 220 (326)
T ss_dssp EEECSCCSCCCCCGGG---GGCCCCCCCTTCCHHHH------T---------TCCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred EEEecCcccccccCCC---CccccccccceeCHHHH------h---------cCCCCcchhHHHHHHHHHHHHcCCCCCC
Confidence 4555 5555544332 25678899999999999 2 255778999999999999999999 996
Q ss_pred HHHhhhh----hhccccCCCchhhhh-hhhHHHHH-HHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYI----RCVSTKASDDNIACL-GMYMAWME-KVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
....... ........+..|... ........ ................+.+++.+||+.+|.+||++.++.+
T Consensus 221 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 296 (326)
T 1blx_A 221 GSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 296 (326)
T ss_dssp CSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 5332211 000000000111000 00000000 0000000111223445889999999999999999887654
|
| >2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-13 Score=129.45 Aligned_cols=114 Identities=14% Similarity=0.252 Sum_probs=70.7
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
+|+. |+++.+..... ......||+.|+|||++... ...+++++|||||||+||+|++|+ ||.
T Consensus 162 ~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~-------------~~~~~~~~Di~slG~il~~l~~g~~pf~ 226 (295)
T 2clq_A 162 LKISDFGTSKRLAGINP--CTETFTGTLQYMAPEIIDKG-------------PRGYGKAADIWSLGCTIIEMATGKPPFY 226 (295)
T ss_dssp EEECCTTTCEESCC-------CCCCCCGGGCCHHHHHHG-------------GGGCSHHHHHHHHHHHHHHHHHTSCTTG
T ss_pred EEEeecccccccCCCCC--cccccCCCccccChhhhcCC-------------CCCCCcHHHHHHHHHHHHHHHHCCCCcc
Confidence 4555 44555443322 25567899999999999321 123568999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
........ ...................++.+++.+||+.+|.+||++.++.+
T Consensus 227 ~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 227 ELGEPQAA------------------MFKVGMFKVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp GGSSHHHH------------------HHHHHHHCCCCCCCTTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred CCCchhHH------------------HHhhccccccccccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 53221000 00000000001111223446899999999999999999887654
|
| >3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ... | Back alignment and structure |
|---|
Probab=99.33 E-value=4e-13 Score=128.35 Aligned_cols=129 Identities=15% Similarity=0.193 Sum_probs=76.0
Q ss_pred hhcc--cccccccccch-hhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 14 AKVG--CVGSRICDKEV-GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
+|+. |+++.+..... ........||+.|||||++. ...+++++|||||||++|||+||. ||
T Consensus 153 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~~l~~l~~g~~~~ 217 (295)
T 3ugc_A 153 VKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLT---------------ESKFSVASDVWSFGVVLYELFTYIEKS 217 (295)
T ss_dssp EEECCCCSCC-------------CTTCGGGGCCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHHTTCTT
T ss_pred EEEccCcccccccCCcceeeeccCCCCccceeCcHHhc---------------CCCCChHHHHHHHHHHHHHHHhccccc
Confidence 4555 55655543322 12244566889999999992 245678999999999999999999 98
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHH-----hhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLL-----ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~ 164 (552)
................ ............ .+.......++.+++.+||+.+|.+||++.++.+.+.+
T Consensus 218 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~ 288 (295)
T 3ugc_A 218 KSPPAEFMRMIGNDKQ---------GQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQ 288 (295)
T ss_dssp CSHHHHHHHHHCTTCC---------THHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHH
T ss_pred CCChHHHHhhhcCccc---------cchhHHHHHHHHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHH
Confidence 5543221110011000 001111111111 11112234569999999999999999999999998887
Q ss_pred hh
Q 008820 165 LI 166 (552)
Q Consensus 165 ~~ 166 (552)
+.
T Consensus 289 l~ 290 (295)
T 3ugc_A 289 IR 290 (295)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.5e-13 Score=129.07 Aligned_cols=132 Identities=20% Similarity=0.245 Sum_probs=66.7
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+++.+..... ..+...||+.|+|||++. + ...+++++|||||||+||+|++|+ ||
T Consensus 140 ~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~------~--------~~~~~~~~Di~slG~il~~l~~g~~p~ 203 (311)
T 4agu_A 140 VIKLCDFGFARLLTGPSD--YYDDEVATRWYRSPELLV------G--------DTQYGPPVDVWAIGCVFAELLSGVPLW 203 (311)
T ss_dssp CEEECCCTTCEECC--------------GGGCCHHHHH------T--------CSCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred CEEEeeCCCchhccCccc--ccCCCcCCccccChHHHh------c--------CCCCCcchhhHHHHHHHHHHHhCCCCC
Confidence 34555 45555543332 256778999999999982 2 245678999999999999999999 99
Q ss_pred hHHHhhhh----hhccccCCCchhhhhhhhHHHHHH-HH-----HHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHH
Q 008820 90 TKELIDYI----RCVSTKASDDNIACLGMYMAWMEK-VT-----YLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVW 159 (552)
Q Consensus 90 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~ 159 (552)
........ ........+..+..+......... .+ ............++.+++.+||+.+|.+||++.++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell 283 (311)
T 4agu_A 204 PGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLL 283 (311)
T ss_dssp CCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHH
T ss_pred CCCCHHHHHHHHHHHhcccccccccccccccccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHh
Confidence 55322211 000000000000000000000000 00 000000112334588999999999999999988766
Q ss_pred H
Q 008820 160 K 160 (552)
Q Consensus 160 ~ 160 (552)
+
T Consensus 284 ~ 284 (311)
T 4agu_A 284 H 284 (311)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-13 Score=128.97 Aligned_cols=98 Identities=15% Similarity=0.211 Sum_probs=68.0
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
....||+.|+|||++. ...+++++|||||||++|+|+| |+ ||.......+.
T Consensus 172 ~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~------------ 224 (278)
T 1byg_A 172 DTGKLPVKWTAPEALR---------------EKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVV------------ 224 (278)
T ss_dssp ----CCTTTSCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHH------------
T ss_pred cCCCccccccCHHHhC---------------CCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHH------------
Confidence 3457899999999982 2456789999999999999998 99 99764333110
Q ss_pred hhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 111 CLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
..+... ...........+.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 225 ---------~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~ 272 (278)
T 1byg_A 225 ---------PRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIK 272 (278)
T ss_dssp ---------HHHTTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ---------HHHhcCCCCCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHH
Confidence 000000 00111123445899999999999999999999999888764
|
| >2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=4e-13 Score=129.83 Aligned_cols=104 Identities=16% Similarity=0.256 Sum_probs=71.2
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
....||+.|+|||++ .+ .....+++++|||||||+||||++|+ ||.......-. .
T Consensus 201 ~~~~gt~~y~aPE~~------~~------~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~------------~ 256 (317)
T 2buj_A 201 AAQRCTISYRAPELF------SV------QSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDS------------V 256 (317)
T ss_dssp HHHHSCGGGCCGGGS------SC------CSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSC------------H
T ss_pred ccccCCcccCCHhHh------cc------CCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccch------------h
Confidence 466789999999998 22 01234678999999999999999999 99764322000 0
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
...... .. ..+.......++.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 257 ---~~~~~~-~~--~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~ 305 (317)
T 2buj_A 257 ---ALAVQN-QL--SIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQ 305 (317)
T ss_dssp ---HHHHHC-C----CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTC
T ss_pred ---hHHhhc-cC--CCCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcC
Confidence 000000 00 01111223446999999999999999999999999888764
|
| >2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-13 Score=129.63 Aligned_cols=110 Identities=18% Similarity=0.309 Sum_probs=72.4
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
+|+. |+++.+..... ......||+.|+|||++ . ....+.++|||||||+||+|++|+ ||.
T Consensus 154 ~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~~l~~l~~g~~p~~ 216 (294)
T 2rku_A 154 VKIGDFGLATKVEYDGE--RKKVLCGTPNYIAPEVL------S---------KKGHSFEVDVWSIGCIMYTLLVGKPPFE 216 (294)
T ss_dssp EEECCCTTCEECCSTTC--CBCCCCSCCSSCCHHHH------T---------TSCBCTHHHHHHHHHHHHHHHHSSCTTC
T ss_pred EEEEeccCceecccCcc--ccccccCCCCcCCcchh------c---------cCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence 4555 44544432221 24557899999999998 2 245678999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
........ .................+.+++.+||+.+|.+||++.++.+.
T Consensus 217 ~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~ 266 (294)
T 2rku_A 217 TSCLKETY---------------------LRIKKNEYSIPKHINPVAASLIQKMLQTDPTARPTINELLND 266 (294)
T ss_dssp CSSHHHHH---------------------HHHHTTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred CCCHHHHH---------------------HHHhhccCCCccccCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence 64332110 000000000111233458899999999999999999887663
|
| >3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-13 Score=131.74 Aligned_cols=128 Identities=18% Similarity=0.261 Sum_probs=78.6
Q ss_pred hhcc--cccccccccch-hhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 14 AKVG--CVGSRICDKEV-GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.|+. |+++.+..... ........||+.|+|||++. ...++.++|||||||++|+|+||+ ||
T Consensus 173 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~il~~ll~g~~p~ 237 (318)
T 3lxp_A 173 VKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLK---------------EYKFYYASDVWSFGVTLYELLTHCDSS 237 (318)
T ss_dssp EEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHH---------------HCEEEHHHHHHHHHHHHHHHHTTTCGG
T ss_pred EEECCccccccccccccccccccCCCCCceeeChHHhc---------------CCCCCcHHHHHHHHHHHHHHHhCCCcc
Confidence 4555 45555443322 12345677999999999992 245668999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHh-----hhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLE-----NKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~ 164 (552)
.............. .............. ........++.+++.+||+.+|.+||++.++.+.+..
T Consensus 238 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~ 307 (318)
T 3lxp_A 238 QSPPTKFLELIGIA----------QGQMTVLRLTELLERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKT 307 (318)
T ss_dssp GSHHHHHHHHHCSC----------CHHHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred cccchhhhhhhccc----------ccchhHHHHHHHHhcccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHH
Confidence 66443311100000 00000011111111 1112234569999999999999999999999988877
Q ss_pred hh
Q 008820 165 LI 166 (552)
Q Consensus 165 ~~ 166 (552)
+.
T Consensus 308 l~ 309 (318)
T 3lxp_A 308 VH 309 (318)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-13 Score=128.55 Aligned_cols=116 Identities=15% Similarity=0.159 Sum_probs=78.2
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
.|+. |+++.+...... ......||+.|+|||++. ...+++++|||||||+||||++ |+ ||
T Consensus 148 ~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~il~el~~~g~~p~ 211 (279)
T 1qpc_A 148 CKIADFGLARLIEDNEYT-AREGAKFPIKWTAPEAIN---------------YGTFTIKSDVWSFGILLTEIVTHGRIPY 211 (279)
T ss_dssp EEECCCTTCEECSSSCEE-CCTTCCCCTTTSCHHHHH---------------HCEECHHHHHHHHHHHHHHHHTTTCCSS
T ss_pred EEECCCcccccccCcccc-cccCCCCccCccChhhhc---------------cCCCCchhhhHHHHHHHHHHHhCCCCCC
Confidence 4555 455555443321 245667899999999992 2456789999999999999999 89 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
.......+. ..+... ...........+.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 212 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~ 268 (279)
T 1qpc_A 212 PGMTNPEVI---------------------QNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFF 268 (279)
T ss_dssp TTCCHHHHH---------------------HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred cccCHHHHH---------------------HHHhcccCCCCcccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHH
Confidence 764333110 000000 00011123345899999999999999999999999888765
|
| >4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-13 Score=130.68 Aligned_cols=132 Identities=15% Similarity=0.156 Sum_probs=80.6
Q ss_pred hhcc--cccccccccch-hhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 14 AKVG--CVGSRICDKEV-GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
+|+. |+++.+..... ........||+.|+|||++. ...++.++|||||||++|+|+||. |+
T Consensus 165 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~il~~l~~g~~p~ 229 (302)
T 4e5w_A 165 VKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLM---------------QSKFYIASDVWSFGVTLHELLTYCDSD 229 (302)
T ss_dssp EEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHH---------------HCEEEHHHHHHHHHHHHHHHHTTTCGG
T ss_pred EEECcccccccccCCCcceeccCCCCCCccccCCeeec---------------CCCCCcchhHHHHHHHHHHHHHccCCC
Confidence 4555 45555544322 12355678999999999992 245668999999999999999999 98
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
.......... ... .. .. ............. ...........+.+++.+||+.+|.+||++.++.+.+..++
T Consensus 230 ~~~~~~~~~~-~~~-~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll 301 (302)
T 4e5w_A 230 SSPMALFLKM-IGP-TH---GQ-MTVTRLVNTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 301 (302)
T ss_dssp GSHHHHHHHH-HCS-CC---GG-GHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred cchhhHHhhc-cCC-cc---cc-cCHHHHHHHHhccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence 5543221110 000 00 00 0001111111000 01111223456999999999999999999999999888764
|
| >3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-13 Score=129.31 Aligned_cols=110 Identities=19% Similarity=0.324 Sum_probs=73.9
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+...... .....||+.|+|||++ . ...+++++|||||||+||+|++|+ ||.
T Consensus 158 ~kl~Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~il~~l~~g~~p~~ 220 (303)
T 3a7i_A 158 VKLADFGVAGQLTDTQIK--RNTFVGTPFWMAPEVI------K---------QSAYDSKADIWSLGITAIELARGEPPHS 220 (303)
T ss_dssp EEECCCTTCEECBTTBCC--BCCCCSCGGGCCHHHH------T---------TCCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred EEEeecccceecCccccc--cCccCCCcCccCHHHH------h---------cCCCCchhhhHHHHHHHHHHccCCCCCC
Confidence 4555 455555444322 4567899999999999 2 255678999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
......+ ...+... +..........+.+++.+||+.+|.+||++.++.+.
T Consensus 221 ~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 271 (303)
T 3a7i_A 221 ELHPMKV---------------------LFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKH 271 (303)
T ss_dssp TSCHHHH---------------------HHHHHHSCCCCCCSSCCHHHHHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred CcCHHHH---------------------HHHhhcCCCCCCccccCHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence 5332211 0001000 011111234458999999999999999998877653
|
| >2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-13 Score=128.32 Aligned_cols=110 Identities=25% Similarity=0.361 Sum_probs=63.3
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+.... ......||+.|+|||++ .+ ....++++|||||||++|+|++|+ ||.
T Consensus 150 ~~l~dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~------~~--------~~~~~~~~Di~slG~~l~~l~~g~~p~~ 212 (276)
T 2h6d_A 150 AKIADFGLSNMMSDGE---FLRTSCGSPNYAAPEVI------SG--------RLYAGPEVDIWSCGVILYALLCGTLPFD 212 (276)
T ss_dssp EEECCCCGGGCCCC----------------CCTGGG------TT--------SCCCHHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred EEEeecccccccCCCc---ceecccCCccccCHHHH------cC--------CCCCCccchHHHHHHHHHHHHhCCCCCC
Confidence 3444 4454444432 24567899999999998 22 122357999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
......+ ...+.............++.+++.+||+.+|.+||++.++.+.
T Consensus 213 ~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h 262 (276)
T 2h6d_A 213 DEHVPTL---------------------FKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREH 262 (276)
T ss_dssp CSSHHHH---------------------HHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred CCcHHHH---------------------HHHhhcCcccCchhcCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence 6433311 1111000000111233458999999999999999999887763
|
| >3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.2e-13 Score=128.45 Aligned_cols=117 Identities=19% Similarity=0.133 Sum_probs=77.5
Q ss_pred hhcc--cccccccccchh--hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C
Q 008820 14 AKVG--CVGSRICDKEVG--LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~--~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p 88 (552)
.|+. |+++.+...... .......||+.|+|||++ . ...+++++|||||||++|+|++|. |
T Consensus 163 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~il~~l~~g~~~ 227 (298)
T 3pls_A 163 VKVADFGLARDILDREYYSVQQHRHARLPVKWTALESL------Q---------TYRFTTKSDVWSFGVLLWELLTRGAP 227 (298)
T ss_dssp EEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHH------T---------TCCCCHHHHHHHHHHHHHHHHHTSCC
T ss_pred EEeCcCCCcccccCCcccccccCcCCCCCccccChhhh------c---------cCCCChhhchhhHHHHHHHHhhCCCC
Confidence 4555 556655444321 224567889999999999 2 356778999999999999999976 5
Q ss_pred c-hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 F-TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
| .......+. ...... ...........+.+++.+||+.+|.+||++.++.+.+.++.
T Consensus 228 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~ 286 (298)
T 3pls_A 228 PYRHIDPFDLT---------------------HFLAQGRRLPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIV 286 (298)
T ss_dssp TTTTSCGGGHH---------------------HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCccCCHHHHH---------------------HHhhcCCCCCCCccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 4 332222110 000000 00111123345899999999999999999999999888775
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-09 Score=110.69 Aligned_cols=263 Identities=11% Similarity=0.007 Sum_probs=169.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC--CCCCCccccccccCCC
Q 008820 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS--FPLGHEPLKKWNEEKD 339 (552)
Q Consensus 262 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~ 339 (552)
+.++++...+++|.++|..+++.+.++... ..+..+.|+|++. ++++++.|+.|.+||+. +.+.. .......
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr-~lyv~~~dg~V~viD~~~~t~~~v---~~i~~G~- 240 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPTTV---AEIKIGS- 240 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCCEE---EEEECCS-
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCC-EEEEEcCCCeEEEEECCCCCCcEe---EEEecCC-
Confidence 345667778999999999999999988743 4567999999776 55667789999999995 43322 2222211
Q ss_pred ceeeeEEEEe----eCCCEEEEeeC-CCcEEEEECCCCceeEEecCC-----------CCCeEEEEEe-C-C-EEEEEeC
Q 008820 340 WRYSGIHALT----TSGRYLYTGSG-DRTIKAWSLLDGTLSCTMSGH-----------KSAVSTLAVC-N-G-VLYSGSR 400 (552)
Q Consensus 340 ~~~~~~~~~~----~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~h-----------~~~v~~l~~~-~-~-~l~s~~~ 400 (552)
. ..-.+++ |+|+++++++. +++|.++|..+.+.+..+... ...+..+..+ + . +++....
T Consensus 241 -~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 241 -E-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp -E-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred -C-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 1 1234778 69997776654 599999999999998876421 1256777777 2 2 6666777
Q ss_pred CCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEE-CCCcEEEEeCCc--ceeeeec-----ccc-eEEEEE
Q 008820 401 DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRNDK--FMKSMQT-----HKG-SVFAVF 471 (552)
Q Consensus 401 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~--~~~~~~~-----h~~-~v~~v~ 471 (552)
+|.|.++|..+.+.+............ ...|+|++++++++. .++.|.++|+.+ ....+.. |.+ .+.-+.
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i~~~~~~~-d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~ 397 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEISAERFLH-DGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVH 397 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEEECCSSEE-EEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEE
T ss_pred CCeEEEEecCCCccceeeeeecccccc-CceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeEC
Confidence 899999999876544333322222233 368999999987766 578999999664 3333322 432 222234
Q ss_pred ecCCEE-EEEe-CCCeEEEEecCC-------CeeeeeeccCCCcccCcceEEEEEeCC--eEEEEeC-------CCeEEE
Q 008820 472 LEGKWL-FTGG-WDKTVSVQELAG-------DEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCA-------DRTVKI 533 (552)
Q Consensus 472 ~~~~~l-~sgs-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~-------Dg~v~i 533 (552)
+++..+ +++. .++.|.++|..+ .+........+ ..-..+..+|+ .+++... .+.|.+
T Consensus 398 p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g-----~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v 472 (567)
T 1qks_A 398 PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG-----GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV 472 (567)
T ss_dssp TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC-----SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE
T ss_pred CCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC-----CCCEEEEeCCCCCeEEEecCCCCCcccCceEEE
Confidence 554444 4443 468999999986 23333322211 11122445543 3665442 458999
Q ss_pred EEecC
Q 008820 534 ALCNR 538 (552)
Q Consensus 534 w~~~~ 538 (552)
+|+..
T Consensus 473 ~d~~~ 477 (567)
T 1qks_A 473 FDIKA 477 (567)
T ss_dssp EEGGG
T ss_pred EECCc
Confidence 99874
|
| >3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.6e-13 Score=131.33 Aligned_cols=98 Identities=18% Similarity=0.320 Sum_probs=54.6
Q ss_pred hccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhhh
Q 008820 34 DFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIACL 112 (552)
Q Consensus 34 ~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~ 112 (552)
...||+.|||||++. + .....+++++|||||||+||+|+||+ ||.......+.
T Consensus 209 ~~~~t~~y~aPE~~~------~------~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~-------------- 262 (337)
T 3ll6_A 209 TRNTTPMYRTPEIID------L------YSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLRIV-------------- 262 (337)
T ss_dssp ---------------------C------CTTSCSSHHHHHHHHHHHHHHHHHSSCCC-----------------------
T ss_pred cccCCCCcCChhhhh------c------cccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHHhh--------------
Confidence 567999999999981 1 01345678999999999999999999 99764433111
Q ss_pred hhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 113 GMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
... ............+.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 263 -------~~~--~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~ 307 (337)
T 3ll6_A 263 -------NGK--YSIPPHDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIA 307 (337)
T ss_dssp ------------CCCCTTCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred -------cCc--ccCCcccccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 000 000111223345889999999999999999999999888765
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-08 Score=106.06 Aligned_cols=288 Identities=10% Similarity=0.074 Sum_probs=184.5
Q ss_pred ceEEEEEc--CCEEEEEeCCCcEEEEeCC--CCeEEEEEeCCCCCeEEEEEe----cCCCCEEEEEcCCCcEEEEeCCCC
Q 008820 254 CVTGLAVG--GGFLFSSSFDKSIHVWSLK--DFSHVHTFKGHDHKVMAVVYV----DEDQPLCISGDSGGGIFVWSFSFP 325 (552)
Q Consensus 254 ~V~~l~~s--~~~l~s~s~dg~I~iwd~~--~~~~~~~~~~h~~~v~~v~~~----~~~~~~l~s~~~dg~i~vwd~~~~ 325 (552)
.+..+.|+ ++++++++.|+.|.+||+. +++.+.++.... ....++|+ |++..++++...++++.++|..+.
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~ 276 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 276 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence 56789998 8999999999999999995 888888887644 45799999 588877777778899999998776
Q ss_pred CCCccccccccC-------CCceeeeEEEEeeCCC-EEEEeeCCCcEEEEECCCCcee--EEecCCCCCeEEEEEe-CC-
Q 008820 326 LGHEPLKKWNEE-------KDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLS--CTMSGHKSAVSTLAVC-NG- 393 (552)
Q Consensus 326 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~l~sgs~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~-~~- 393 (552)
+....+...... ....... ...++++. .++....+|.|.++|..+.+.. ..+. ......++.|+ ++
T Consensus 277 ~~~~~i~~~~~~~~~~~~~p~~rva~-i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr 354 (567)
T 1qks_A 277 EPKKIQSTRGMTYDEQEYHPEPRVAA-ILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHR 354 (567)
T ss_dssp CEEEEEECCEECTTTCCEESCCCEEE-EEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSC
T ss_pred cEEEEEeccccccccccccCCCceEE-EEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCC
Confidence 544433321110 0101122 23445444 5666677899999998765432 2222 34456788888 33
Q ss_pred EEEE-EeCCCcEEEEECCCCceeEEEec-C---CCCceEEEEEEcCCCCEEE-EEE-CCCcEEEEeCCc---------ce
Q 008820 394 VLYS-GSRDGTIRLWSLSDHSLLTVLEE-D---SSGAVSSVLSLTAVQHTLV-VSH-ESGSIKVWRNDK---------FM 457 (552)
Q Consensus 394 ~l~s-~~~dg~i~iwd~~~~~~~~~~~~-~---~~~~~~~~~~~s~~~~~l~-~g~-~dg~i~iwd~~~---------~~ 457 (552)
++++ +..+++|.++|+.+++.+..+.. . +.+... ..++|++..++ ++. .++.|.++|... .+
T Consensus 355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~--~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv 432 (567)
T 1qks_A 355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA--NFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKIL 432 (567)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCE--EEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE
T ss_pred EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccce--eeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEE
Confidence 5554 45689999999999998877765 2 222122 23678755444 443 468999998643 44
Q ss_pred eeeecccce-E-EEEEecCCEEEEEeC-------CCeEEEEecCCC-----eeeeeeccC----CCcccCcceEEEEEeC
Q 008820 458 KSMQTHKGS-V-FAVFLEGKWLFTGGW-------DKTVSVQELAGD-----EFEEDVIPT----GAIPCGSVITALLYWQ 519 (552)
Q Consensus 458 ~~~~~h~~~-v-~~v~~~~~~l~sgs~-------dg~i~iwd~~~~-----~~~~~~~~~----~~~~~~~~v~~l~~~~ 519 (552)
+.+...... + ....++++++++... .++|.++|+.+. ......... .-......+..+.|++
T Consensus 433 ~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (567)
T 1qks_A 433 DSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK 512 (567)
T ss_dssp EEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT
T ss_pred EEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECC
Confidence 555543222 1 334569999988763 459999999865 211011110 0001134688899995
Q ss_pred -C-eEEEEe-----CCCeEEEEEecCCcceeEEEe
Q 008820 520 -G-KLFVGC-----ADRTVKIALCNRQIPEIFSLL 547 (552)
Q Consensus 520 -~-~l~s~s-----~Dg~v~iw~~~~~~~~~~~~~ 547 (552)
+ .++++. .++.|.|+|.. +.+....+.
T Consensus 513 ~G~~~~~s~~~~~~~~~~i~v~D~~-t~~~~~~i~ 546 (567)
T 1qks_A 513 DGTEVWFSVWNGKDQESALVVVDDK-TLELKHVIK 546 (567)
T ss_dssp TSSEEEEEEECCTTSCCEEEEEETT-TTEEEEEEC
T ss_pred CCCEEEEEeecCCCCCCcEEEEECC-CceEEEEeC
Confidence 3 344432 37999999976 455555554
|
| >4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.1e-13 Score=130.56 Aligned_cols=125 Identities=19% Similarity=0.340 Sum_probs=68.8
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.+|+. |+++.+..... ......||+.|||||++ .+ ...+++++|||||||+||+|++|+ ||
T Consensus 162 ~~kl~Dfg~~~~~~~~~~--~~~~~~~t~~y~aPE~~------~~--------~~~~~~~~Di~slG~il~~l~~g~~pf 225 (331)
T 4aaa_A 162 VVKLCDFGFARTLAAPGE--VYDDEVATRWYRAPELL------VG--------DVKYGKAVDVWAIGCLVTEMFMGEPLF 225 (331)
T ss_dssp CEEECCCTTC--------------CCCCCTTCCHHHH------TT--------CTTCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred cEEEEeCCCceeecCCcc--ccCCCcCCccccCcccc------cC--------CCCcchHHHHHHHHHHHHHHHhCCCCC
Confidence 35555 45555443322 25667899999999998 22 235678999999999999999999 99
Q ss_pred hHHHhhhh-h---hccccCCCchhhhhhhhHHHHHHHHHH-------------HhhhhcCccccHHHHHHhhcccCCCCC
Q 008820 90 TKELIDYI-R---CVSTKASDDNIACLGMYMAWMEKVTYL-------------LENKFGSEFVSLQLMFCQCLNFDPGCR 152 (552)
Q Consensus 90 ~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~l~~~p~~R 152 (552)
........ . .......+..+. .....+.. .....+.....+.+++.+||+.+|.+|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R 298 (331)
T 4aaa_A 226 PGDSDIDQLYHIMMCLGNLIPRHQE-------LFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKR 298 (331)
T ss_dssp CCSSHHHHHHHHHHHHCSCCHHHHH-------HHHHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGS
T ss_pred CCCCcHHHHHHHHHHhCCCChhhhh-------HhhhccccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccC
Confidence 55332211 0 000000000000 00000000 000111234458999999999999999
Q ss_pred cchhhHHH
Q 008820 153 PLLTNVWK 160 (552)
Q Consensus 153 ~~~~~~~~ 160 (552)
|++.++.+
T Consensus 299 pt~~ell~ 306 (331)
T 4aaa_A 299 PFCAELLH 306 (331)
T ss_dssp CCGGGGGG
T ss_pred CCHHHHhc
Confidence 99987655
|
| >2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=6.5e-13 Score=126.13 Aligned_cols=110 Identities=14% Similarity=0.083 Sum_probs=76.3
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+..... .....||+.|+|||++ . ...+++++|||||||+||+|++|. ||.
T Consensus 161 ~kl~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~il~~l~~~~~~~~ 222 (284)
T 2a19_B 161 VKIGDFGLVTSLKNDGK---RTRSKGTLRYMSPEQI------S---------SQDYGKEVDLYALGLILAELLHVCDTAF 222 (284)
T ss_dssp EEECCCTTCEESSCCSC---CCCCCSCCTTSCHHHH------H---------CSCCCTHHHHHHHHHHHHHHHSCCSSHH
T ss_pred EEECcchhheecccccc---ccccCCcccccChhhh------c---------cCCCcchhhhHHHHHHHHHHHhcCCcch
Confidence 4555 44555544322 4567899999999998 2 245678999999999999999999 885
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
..... . ..... ..........+.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 223 ~~~~~-~------------------~~~~~------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~ 273 (284)
T 2a19_B 223 ETSKF-F------------------TDLRD------GIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK 273 (284)
T ss_dssp HHHHH-H------------------HHHHT------TCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHT
T ss_pred hHHHH-H------------------HHhhc------ccccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHh
Confidence 53211 0 00000 0001112335889999999999999999999999887764
|
| >1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-13 Score=129.91 Aligned_cols=93 Identities=13% Similarity=0.168 Sum_probs=64.8
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....||+.|+|||++ .+.++.++|||||||+||+|++|+ ||.......
T Consensus 187 ~~~~~~t~~y~aPE~~----------------~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~-------------- 236 (290)
T 1t4h_A 187 AKAVIGTPEFMAPEMY----------------EEKYDESVDVYAFGMCMLEMATSEYPYSECQNAA-------------- 236 (290)
T ss_dssp BEESCSSCCCCCGGGG----------------GTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHH--------------
T ss_pred cccccCCcCcCCHHHH----------------hccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHH--------------
Confidence 4567899999999988 234678999999999999999999 996522110
Q ss_pred hhhhhHHHHHHHHH--HHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 111 CLGMYMAWMEKVTY--LLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 111 ~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
........ .+........+++.+++.+||+.+|.+||++.++.+
T Consensus 237 ------~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 237 ------QIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp ------HHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ------HHHHHHhccCCccccCCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 00000000 011111223346899999999999999999887655
|
| >3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.7e-13 Score=132.74 Aligned_cols=120 Identities=17% Similarity=0.149 Sum_probs=70.3
Q ss_pred hhhcc--cccccccccchh--hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC
Q 008820 13 VAKVG--CVGSRICDKEVG--LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~--~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~ 87 (552)
.+|+. |+++.+...... .......||+.|||||++. ...+++++|||||||+||||+| |.
T Consensus 230 ~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~DvwSlG~il~ellt~~~ 294 (373)
T 3c1x_A 230 TVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ---------------TQKFTTKSDVWSFGVLLWELMTRGA 294 (373)
T ss_dssp CEEECCC---------------------CCGGGSCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CEEEeeccccccccccccccccccCCCCCcccccChHHhc---------------CCCCCcHHHHHHHHHHHHHHHhCcC
Confidence 35666 566665544321 1245677899999999992 2456789999999999999999 56
Q ss_pred -CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
||.......+. ...... ............+.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 295 ~p~~~~~~~~~~-----------------~~~~~~---~~~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~ 354 (373)
T 3c1x_A 295 PPYPDVNTFDIT-----------------VYLLQG---RRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIF 354 (373)
T ss_dssp CSCTTSCSSCHH-----------------HHHHTT---CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHH-----------------HHHHcC---CCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 88653322110 000000 000011123345899999999999999999999999988876
Q ss_pred c
Q 008820 167 I 167 (552)
Q Consensus 167 ~ 167 (552)
.
T Consensus 355 ~ 355 (373)
T 3c1x_A 355 S 355 (373)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-13 Score=131.29 Aligned_cols=99 Identities=16% Similarity=0.115 Sum_probs=68.8
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-CchHHHhhhhhhccccCCCchhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
....||+.|+|||++. ...+++++|||||||+||||+| |+ ||.......+.
T Consensus 199 ~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~------------ 251 (327)
T 1fvr_A 199 TMGRLPVRWMAIESLN---------------YSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELY------------ 251 (327)
T ss_dssp ----CCTTTCCHHHHH---------------HCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHH------------
T ss_pred cCCCCCccccChhhhc---------------cccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHHHH------------
Confidence 4456799999999982 2446789999999999999998 99 99764433111
Q ss_pred hhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhhc
Q 008820 111 CLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~~ 167 (552)
..+... ...........+.+++.+||+.+|.+||++.++.+.+..++.
T Consensus 252 ---------~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~ 300 (327)
T 1fvr_A 252 ---------EKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLE 300 (327)
T ss_dssp ---------HHGGGTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ---------HHhhcCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 000000 000111233458999999999999999999999999988764
|
| >1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.5e-13 Score=130.94 Aligned_cols=130 Identities=9% Similarity=0.092 Sum_probs=77.1
Q ss_pred hhcc--cccccccccchh--hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhC---
Q 008820 14 AKVG--CVGSRICDKEVG--LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG--- 86 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~--~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg--- 86 (552)
+|+. |+++.+...... .......||+.|+|||++ .+.. ......++.++|||||||+||||+||
T Consensus 186 ~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~~~---~~~~~~~~~~~Di~slG~il~el~tg~~~ 256 (342)
T 1b6c_B 186 CCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVL------DDSI---NMKHFESFKRADIYAMGLVFWEIARRCSI 256 (342)
T ss_dssp EEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHH------TSCC---CTTCHHHHHHHHHHHHHHHHHHHHTTBCB
T ss_pred EEEEECCCceeccccccccccccccCCcCcccCCHhhh------cccc---cccccccCCcccHHHHHHHHHHHHhccCc
Confidence 4555 555554443221 124567899999999999 2200 00011344789999999999999999
Q ss_pred -------C-CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHH------HHhhh-hcCccccHHHHHHhhcccCCCC
Q 008820 87 -------E-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTY------LLENK-FGSEFVSLQLMFCQCLNFDPGC 151 (552)
Q Consensus 87 -------~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~l~~~~~~~l~~~p~~ 151 (552)
+ ||........ ....+...+.. .+... .......+.+++.+||+.+|.+
T Consensus 257 ~~~~~~~~~p~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~ 320 (342)
T 1b6c_B 257 GGIHEDYQLPYYDLVPSDP----------------SVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAA 320 (342)
T ss_dssp TTBCCCCCCTTTTTSCSSC----------------CHHHHHHHHTTSCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGG
T ss_pred CCcccccccCccccCcCcc----------------cHHHHHHHHHHHHhCCCCcccccchhHHHHHHHHHHHHhccChhh
Confidence 7 7754221100 00001110000 00000 0001124889999999999999
Q ss_pred CcchhhHHHHHHhhhcC
Q 008820 152 RPLLTNVWKCIRELIIK 168 (552)
Q Consensus 152 R~~~~~~~~~l~~~~~~ 168 (552)
||++.++.+.+.++...
T Consensus 321 Rps~~~i~~~L~~i~~~ 337 (342)
T 1b6c_B 321 RLTALRIKKTLSQLSQQ 337 (342)
T ss_dssp SCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887644
|
| >3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-13 Score=131.35 Aligned_cols=92 Identities=22% Similarity=0.316 Sum_probs=46.4
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhh
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIAC 111 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~ 111 (552)
....||+.|+|||++. ....++++|||||||+||+|++|+ ||......... ... ..
T Consensus 170 ~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~--~~~-~~----- 226 (278)
T 3cok_A 170 YTLCGTPNYISPEIAT---------------RSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTL--NKV-VL----- 226 (278)
T ss_dssp -------------------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-------C-CS-----
T ss_pred eeccCCCCcCCcchhc---------------CCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHHH--HHH-hh-----
Confidence 4578999999999982 244568999999999999999999 99764332110 000 00
Q ss_pred hhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 112 LGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
. ..........++.+++.+||+.+|.+||++.++.+
T Consensus 227 -~------------~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 227 -A------------DYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp -S------------CCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred -c------------ccCCccccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence 0 00001112335889999999999999999877554
|
| >1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.7e-13 Score=136.45 Aligned_cols=114 Identities=16% Similarity=0.199 Sum_probs=75.9
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
.+|+. |+++..... .....||+.|||||++ . ...++.++|||||||+||||+| |+ |
T Consensus 327 ~~kl~DfG~a~~~~~~-----~~~~~~~~~y~aPE~~------~---------~~~~~~~sDvwslG~~l~el~t~g~~P 386 (450)
T 1k9a_A 327 VAKVSDFGLTKEASST-----QDTGKLPVKWTAPEAL------R---------EKKFSTKSDVWSFGILLWEIYSFGRVP 386 (450)
T ss_dssp CEEECCCTTCEECC-----------CCCTTTSCHHHH------H---------SSCCCHHHHHHHHHHHHHHHHTTTCCS
T ss_pred CEEEeeCCCccccccc-----ccCCCCCcceeCHHHh------c---------CCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence 45666 566544332 2334789999999999 2 2557789999999999999998 99 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|.......+. ...... ............+.+++.+|++.+|.+||++.++.+.+..+.
T Consensus 387 ~~~~~~~~~~-----------------~~i~~~---~~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~ 444 (450)
T 1k9a_A 387 YPRIPLKDVV-----------------PRVEKG---YKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIR 444 (450)
T ss_dssp STTSCTTTHH-----------------HHHHTT---CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHH-----------------HHHHcC---CCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 9764333110 000000 000111223456999999999999999999999999887764
|
| >4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.5e-13 Score=141.21 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=75.3
Q ss_pred hhhcc--cccccccccch-hhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-
Q 008820 13 VAKVG--CVGSRICDKEV-GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~- 87 (552)
.+|+. |+|+.+...+. ........||+.|||||++. ...++.++|||||||+||||+| |+
T Consensus 507 ~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~~---------------~~~~~~~sDvwSlGv~l~ellt~G~~ 571 (635)
T 4fl3_A 507 YAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECIN---------------YYKFSSKSDVWSFGVLMWEAFSYGQK 571 (635)
T ss_dssp EEEECCTTHHHHTTC-------------CGGGSCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CEEEEEcCCccccccCccccccccCCCCceeeeChhhhc---------------CCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence 46666 66666654432 22345567899999999992 2457789999999999999998 99
Q ss_pred CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
||.+.....+. ..+... ..........++.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 572 Pf~~~~~~~~~---------------------~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~ 630 (635)
T 4fl3_A 572 PYRGMKGSEVT---------------------AMLEKGERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYY 630 (635)
T ss_dssp SSTTCCHHHHH---------------------HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHH---------------------HHHHcCCCCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence 99764433111 000000 00111123445899999999999999999999998887754
|
| >1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.6e-13 Score=128.40 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=74.8
Q ss_pred hhcc--cccccccccchh-hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 14 AKVG--CVGSRICDKEVG-LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
.|+. |+++.+...... .......||+.|+|||++. ...+++++|||||||+||+|++ |+ |
T Consensus 160 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~il~~l~~~g~~p 224 (291)
T 1u46_A 160 VKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLK---------------TRTFSHASDTWMFGVTLWEMFTYGQEP 224 (291)
T ss_dssp EEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHH---------------HCEEEHHHHHHHHHHHHHHHHTTSCCT
T ss_pred EEEccccccccccccccchhhhccCCCCceeeCchhhc---------------CCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence 4455 455555433221 2345667899999999982 2446689999999999999999 99 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH--HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL--LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|.......+. ...... ..........++.+++.+||+.+|.+||++.++.+.+.++.
T Consensus 225 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~ 283 (291)
T 1u46_A 225 WIGLNGSQIL---------------------HKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQ 283 (291)
T ss_dssp TTTCCHHHHH---------------------HHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred cccCCHHHHH---------------------HHHHccCCCCCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhC
Confidence 9664333110 000000 00011123445899999999999999999999999888764
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.5e-08 Score=93.65 Aligned_cols=277 Identities=11% Similarity=0.024 Sum_probs=172.8
Q ss_pred EEEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEE-EEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 008820 244 KFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVH-TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (552)
Q Consensus 244 ~~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vw 320 (552)
.-+.+......+.+++++ ++..++...++.|.+||.. ++... .+..+...+.++++.+++. +.++...++.|..|
T Consensus 11 ~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~~~ 88 (300)
T 2qc5_A 11 EEFNLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGD-IWFTENGANKIGKL 88 (300)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEE
T ss_pred EEEecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCC-EEEEecCCCeEEEE
Confidence 334455566788999998 6766666678999999987 55443 2233446789999987654 66666667889999
Q ss_pred eCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeE-EecCCCCCeEEEEEe-CC-EEEE
Q 008820 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSC-TMSGHKSAVSTLAVC-NG-VLYS 397 (552)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~-~~-~l~s 397 (552)
|.. +.. ..... ... . ......++.++++.+++...++.|..+|.. ++... .+......+.++++. ++ +.++
T Consensus 89 d~~-g~~-~~~~~-~~~-~-~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~ 162 (300)
T 2qc5_A 89 SKK-GGF-TEYPL-PQP-D-SGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFT 162 (300)
T ss_dssp CTT-SCE-EEEEC-SST-T-CCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred CCC-CCe-EEecC-CCC-C-CCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEE
Confidence 876 322 11111 101 1 112233556777777776667899999987 65543 233345678899998 44 4444
Q ss_pred EeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcceeee--ecccceEEEEEe--c
Q 008820 398 GSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSM--QTHKGSVFAVFL--E 473 (552)
Q Consensus 398 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~--~~h~~~v~~v~~--~ 473 (552)
...++.|..+|. +++... +...........+++++++++.++....+.|.+||.......+ ..+...+.++.+ +
T Consensus 163 ~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~ 240 (300)
T 2qc5_A 163 ENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKN 240 (300)
T ss_dssp ETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECST
T ss_pred ecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCC
Confidence 445788999998 555443 3322222223346888999877766667789999974333322 233455667766 6
Q ss_pred CCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEe-CCeEEEEeCCCeEEEEEe
Q 008820 474 GKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QGKLFVGCADRTVKIALC 536 (552)
Q Consensus 474 ~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~Dg~v~iw~~ 536 (552)
|+..++...++.|..||.. +......... ....+.+++.+ ++.++.++.. .|..++.
T Consensus 241 g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~----~~~~~~~i~~~~~g~l~v~~~~-~i~~~~p 298 (300)
T 2qc5_A 241 SEIWFTEWGANQIGRITND-NTIQEYQLQT----ENAEPHGITFGKDGSVWFALKC-KIGKLNL 298 (300)
T ss_dssp TCEEEEETTTTEEEEECTT-SCEEEEECCS----TTCCCCCEEECTTSCEEEECSS-EEEEEEE
T ss_pred CCEEEeccCCCeEEEECCC-CcEEEEECCc----cCCccceeEeCCCCCEEEEccC-ceEEeCC
Confidence 7766666567899999984 4333221111 12346777887 4667777764 5655554
|
| >2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=2.7e-13 Score=128.21 Aligned_cols=115 Identities=19% Similarity=0.270 Sum_probs=71.4
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+.............||+.|+|||++ .+ ....+.++|||||||++|+|++|+ ||.
T Consensus 144 ~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~--------~~~~~~~~Di~slG~il~~l~~g~~p~~ 209 (276)
T 2yex_A 144 LKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL------KR--------REFHAEPVDVWSCGIVLTAMLAGELPWD 209 (276)
T ss_dssp EEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGG------TC--------SSBCHHHHHHHHHHHHHHHHHHSSCCCS
T ss_pred EEEeeCCCccccCCCcchhcccCCccccCccChHHH------hc--------CCCCCCcchHHHHHHHHHHHHhCCCCCC
Confidence 3444 444444332222235678899999999998 22 122357899999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
........ ...+..... ...........+.+++.+||+.+|.+||++.++.+
T Consensus 210 ~~~~~~~~----------------~~~~~~~~~--~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 210 QPSDSCQE----------------YSDWKEKKT--YLNPWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp CSCTTSHH----------------HHHHHTTCT--TSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCchHHHH----------------HHHhhhccc--ccCchhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence 53322000 000000000 00111123445889999999999999999877554
|
| >2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.4e-13 Score=130.88 Aligned_cols=98 Identities=15% Similarity=0.184 Sum_probs=61.3
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....||+.|+|||++..... ....+++++|||||||+||+|++|+ ||........
T Consensus 186 ~~~~~~~~~y~aPE~~~~~~~----------~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~------------- 242 (326)
T 2x7f_A 186 RNTFIGTPYWMAPEVIACDEN----------PDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRA------------- 242 (326)
T ss_dssp -----CCGGGCCHHHHC------------------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHH-------------
T ss_pred cccccCCccccChhhhccccc----------cCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHH-------------
Confidence 456789999999999821100 1345678999999999999999999 9965332210
Q ss_pred hhhhhHHHHHHHHHHHhh--hhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 111 CLGMYMAWMEKVTYLLEN--KFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.......+.. ........+.+++.+||..+|.+||++.++.+
T Consensus 243 --------~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 286 (326)
T 2x7f_A 243 --------LFLIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPATEQLMK 286 (326)
T ss_dssp --------HHHHHHSCCCCCSCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred --------HHHhhcCccccCCccccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 0001110100 11123446999999999999999999887765
|
| >3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=4.6e-13 Score=128.13 Aligned_cols=118 Identities=16% Similarity=0.120 Sum_probs=75.4
Q ss_pred hhcc--cccccccccch--hhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC--
Q 008820 14 AKVG--CVGSRICDKEV--GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-- 87 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~--~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-- 87 (552)
+|+. |+++.+..... ........||+.|+|||++. ...+++++|||||||++|+|++|.
T Consensus 167 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~il~~l~~~~~~ 231 (298)
T 3f66_A 167 VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQ---------------TQKFTTKSDVWSFGVLLWELMTRGAP 231 (298)
T ss_dssp EEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred EEECcccccccccccchhccccccCCCCCccccChHHhc---------------CCCCChHHHHHHHHHHHHHHHhCCCC
Confidence 4555 55655544332 12355678899999999992 245678999999999999999955
Q ss_pred CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
||.......+. ...... ............+.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 232 ~~~~~~~~~~~-----------------~~~~~~---~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~ 290 (298)
T 3f66_A 232 PYPDVNTFDIT-----------------VYLLQG---RRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIF 290 (298)
T ss_dssp SSTTSCTTTHH-----------------HHHHTT---CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCccCCHHHHH-----------------HHHhcC---CCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 66543322110 000000 000011112345899999999999999999999999988876
|
| >2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=6.7e-13 Score=133.90 Aligned_cols=124 Identities=15% Similarity=0.226 Sum_probs=68.7
Q ss_pred hhhcc--cccccccccchh--hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC
Q 008820 13 VAKVG--CVGSRICDKEVG--LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE 87 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~--~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~ 87 (552)
.+|++ |+++.+...... .......||+.|||||++ .+.. .......++.++|||||||+||||+| |+
T Consensus 166 ~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~~~--~~~~~~~~~~~~DiwSlG~il~ellt~g~ 237 (434)
T 2rio_A 166 RILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELL------EESN--NLQTKRRLTRSIDIFSMGCVFYYILSKGK 237 (434)
T ss_dssp EEEECCCTTCEECCC--------------CCTTSCHHHH------SCCC--TTSCCCCCCTHHHHHHHHHHHHHHHTTSC
T ss_pred EEEEcccccceecCCCCccceeeecCCCCCCCccCHHHh------cccc--ccccccCcchhhhhHhHHHHHHHHHhCCC
Confidence 45666 667666554321 124567899999999999 2200 00112567889999999999999999 89
Q ss_pred -CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
||..........+........... ... .. ...++.+++.+||+.+|.+||++.++.+
T Consensus 238 ~Pf~~~~~~~~~i~~~~~~~~~~~~------~~~--~~--------~~~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 238 HPFGDKYSRESNIIRGIFSLDEMKC------LHD--RS--------LIAEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp CTTCSTTTHHHHHHHTCCCCCCCTT------CCC--HH--------HHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCCchhhHHHHhcCCCCcccccc------ccc--cc--------chHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 996532221100011000000000 000 00 1124889999999999999999887654
|
| >3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.9e-13 Score=131.69 Aligned_cols=122 Identities=14% Similarity=0.175 Sum_probs=74.3
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+|+.+...+. .....||+.|||||++ .| ...++.++|||||||+||||++|+ ||
T Consensus 180 ~~kl~Dfg~a~~~~~~~~---~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~ell~g~~pf 242 (383)
T 3eb0_A 180 TLKLCDFGSAKKLIPSEP---SVAYICSRFYRAPELM------LG--------ATEYTPSIDLWSIGCVFGELILGKPLF 242 (383)
T ss_dssp EEEECCCTTCEECCTTSC---CCCCCCCSSCCCHHHH------TT--------CSSCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred cEEEEECCCCcccCCCCC---CcCcccCCCccCHHHh------cC--------CCCCCcchhhhhHHHHHHHHHhCCCCC
Confidence 35555 56665554433 4567899999999998 22 234678999999999999999999 99
Q ss_pred hHHHhhh-h---hhccccCCCchhhhhhhhHHHHHHHHH-------------HHhhhhcCccccHHHHHHhhcccCCCCC
Q 008820 90 TKELIDY-I---RCVSTKASDDNIACLGMYMAWMEKVTY-------------LLENKFGSEFVSLQLMFCQCLNFDPGCR 152 (552)
Q Consensus 90 ~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~l~~~p~~R 152 (552)
.+..... + ....+.... ..+....+. ............+.+++.+||+.+|.+|
T Consensus 243 ~~~~~~~~~~~i~~~~g~p~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R 313 (383)
T 3eb0_A 243 SGETSIDQLVRIIQIMGTPTK---------EQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLR 313 (383)
T ss_dssp CCSSHHHHHHHHHHHHCCCCH---------HHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGS
T ss_pred CCCChHHHHHHHHHHhCCCCH---------HHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChhhC
Confidence 6543221 1 100010000 000000000 0000011133458899999999999999
Q ss_pred cchhhHHH
Q 008820 153 PLLTNVWK 160 (552)
Q Consensus 153 ~~~~~~~~ 160 (552)
|++.++.+
T Consensus 314 ~t~~e~l~ 321 (383)
T 3eb0_A 314 INPYEAMA 321 (383)
T ss_dssp CCHHHHHT
T ss_pred CCHHHHhc
Confidence 99887654
|
| >2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.4e-13 Score=140.21 Aligned_cols=118 Identities=15% Similarity=0.088 Sum_probs=75.5
Q ss_pred hhhcc--cccccccccch-hhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-
Q 008820 13 VAKVG--CVGSRICDKEV-GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~- 87 (552)
.+|+. |+++.+..... ........||+.|||||++. ...++.++|||||||+||||+| |+
T Consensus 474 ~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~---------------~~~~~~~sDvwSlGv~l~ellt~G~~ 538 (613)
T 2ozo_A 474 YAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECIN---------------FRKFSSRSDVWSYGVTMWEALSYGQK 538 (613)
T ss_dssp EEEECCCSTTTTCC--------------CCTTSCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred cEEEeeccCcccccCCCceeeeccCCCCccceeCHhhhc---------------CCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence 46676 67776654332 11233445679999999992 2457789999999999999998 99
Q ss_pred CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
||.......+. ..+..- ..........++.+++.+|++.+|.+||++.++.+.+..++
T Consensus 539 Pf~~~~~~~~~---------------------~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~ 597 (613)
T 2ozo_A 539 PYKKMKGPEVM---------------------AFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACY 597 (613)
T ss_dssp TTTTCCSHHHH---------------------HHHHTTCCCCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHH---------------------HHHHcCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 99764333110 000000 00111123456999999999999999999999999888765
|
| >3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.6e-13 Score=128.61 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=71.7
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+..... ......||+.|+|||++ . ...++.++|||||||+||+|++|+ ||.
T Consensus 164 ~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~------~---------~~~~~~~~Di~slG~il~~l~~g~~p~~ 226 (314)
T 3com_A 164 AKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVI------Q---------EIGYNCVADIWSLGITAIEMAEGKPPYA 226 (314)
T ss_dssp EEECCCTTCEECBTTBS--CBCCCCSCGGGCCHHHH------S---------SSCBCTTHHHHHHHHHHHHHHHSSCTTT
T ss_pred EEEeecccchhhhhhcc--ccCccCCCCCccChhhc------C---------CCCCCccccHHHHHHHHHHHHhCCCCCC
Confidence 4455 44544443322 24567899999999999 3 245778999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHh---hhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLE---NKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
........ ........ .........+.+++.+||+.+|.+||++.++.+
T Consensus 227 ~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 227 DIHPMRAI---------------------FMIPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp TSCHHHHH---------------------HHHHHSCCCCCSSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred CCChHHHH---------------------HHHhcCCCcccCCcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 53322100 00000000 001112345899999999999999999887655
|
| >3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-12 Score=128.74 Aligned_cols=114 Identities=16% Similarity=0.176 Sum_probs=64.9
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhh-h---hccccCCC
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYI-R---CVSTKASD 106 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~-~---~~~~~~~~ 106 (552)
.+...||+.|||||++ .+ ...++.++|||||||+||+|++|+ ||.+.....+ . ...+. .+
T Consensus 180 ~~~~~~t~~y~aPE~~------~~--------~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~-~~ 244 (353)
T 3coi_A 180 MTGYVVTRWYRAPEVI------LS--------WMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGV-PG 244 (353)
T ss_dssp ----CCSBCCSCHHHH------SC--------CSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCB-CC
T ss_pred ccccccCcCcCCHHHH------hC--------cCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCC-CC
Confidence 4567899999999998 22 245678999999999999999999 9965432211 1 00000 00
Q ss_pred chhhhhhhhHHHHHHHHHHHh-------hhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 107 DNIACLGMYMAWMEKVTYLLE-------NKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..|................+. .........+.+++.+||+.+|.+||++.++.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 305 (353)
T 3coi_A 245 TEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 305 (353)
T ss_dssp HHHHTTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 011000000000000000000 001123456999999999999999999887654
|
| >2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 | Back alignment and structure |
|---|
Probab=99.30 E-value=8.2e-13 Score=136.79 Aligned_cols=117 Identities=21% Similarity=0.207 Sum_probs=81.0
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
.+|+. |+++.+...... ......||+.|||||++. ...++.++|||||||+||||+| |+ |
T Consensus 401 ~~kl~DFG~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~---------------~~~~~~~sDvwSlGv~l~el~t~g~~P 464 (535)
T 2h8h_A 401 VCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAAL---------------YGRFTIKSDVWSFGILLTELTTKGRVP 464 (535)
T ss_dssp CEEECCTTSTTTCCCHHHH-TTCSTTSCGGGSCHHHHH---------------HCCCCHHHHHHHHHHHHHHHTTTTCCS
T ss_pred cEEEcccccceecCCCcee-cccCCcCcccccCHHHhc---------------cCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence 45666 667766654322 345567899999999982 2456789999999999999999 89 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|.......+. ..+... ...........+.+++.+||+.+|++||++.++.+.+..+.
T Consensus 465 ~~~~~~~~~~---------------------~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~ 522 (535)
T 2h8h_A 465 YPGMVNREVL---------------------DQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF 522 (535)
T ss_dssp STTCCHHHHH---------------------HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSS
T ss_pred CCCCCHHHHH---------------------HHHHcCCCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence 9764332110 000000 00011123345899999999999999999999999888765
|
| >3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=3.9e-13 Score=130.04 Aligned_cols=103 Identities=20% Similarity=0.281 Sum_probs=70.9
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.+|+. |+++.+.... .....||+.|||||++.. ....++++|||||||+||||++|+ ||
T Consensus 188 ~~kL~Dfg~~~~~~~~~----~~~~~gt~~y~aPE~~~~--------------~~~~~~~~Di~slG~il~el~~g~~pf 249 (320)
T 3a99_A 188 ELKLIDFGSGALLKDTV----YTDFDGTRVYSPPEWIRY--------------HRYHGRSAAVWSLGILLYDMVCGDIPF 249 (320)
T ss_dssp EEEECCCTTCEECCSSC----BCCCCSCGGGSCHHHHHH--------------SCBCHHHHHHHHHHHHHHHHHHSSCSC
T ss_pred CEEEeeCcccccccccc----ccCCCCCccCCChHHhcc--------------CCCCCccchHHhHHHHHHHHHHCCCCC
Confidence 35666 5555554432 456789999999999821 122357899999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
...... + ... .........++.+++.+||+.+|.+||++.++.+
T Consensus 250 ~~~~~~-~---~~~-----------------------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 250 EHDEEI-I---RGQ-----------------------VFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp CSHHHH-H---HCC-----------------------CCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CChhhh-h---ccc-----------------------ccccccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 764321 0 000 0001112335889999999999999999887655
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-09 Score=103.11 Aligned_cols=263 Identities=12% Similarity=-0.001 Sum_probs=173.0
Q ss_pred CCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEc---------CCCcEEEEeCCCCCCCccccccccCC--C
Q 008820 271 DKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGD---------SGGGIFVWSFSFPLGHEPLKKWNEEK--D 339 (552)
Q Consensus 271 dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~--~ 339 (552)
++.|.+.|..+++.+.++.....+ . ++++|++..++++.. .++.|.+||..+.+....+....... .
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~ 135 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 135 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccccc
Confidence 568999999999999999866665 4 999999887766653 46889999999876544443221000 0
Q ss_pred ceeeeEEEEeeCCCEEEEeeC--CCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCC-Cce
Q 008820 340 WRYSGIHALTTSGRYLYTGSG--DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSD-HSL 414 (552)
Q Consensus 340 ~~~~~~~~~~~~~~~l~sgs~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~-~~~ 414 (552)
.....-..++++|++++++.. ++.|.++|+.+++.+.++.... . ...+. ...+++.+.||++.+.++.+ ++.
T Consensus 136 g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v 212 (386)
T 3sjl_D 136 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP 212 (386)
T ss_dssp SCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred CCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence 011123589999998888764 6899999999999999885322 1 22233 44778999999999999986 665
Q ss_pred eEEEecCC---CCceEEEEEE-cCCCCEEEEEECCCcEEEEeCCcc----eeeee------------cccceEEEEEecC
Q 008820 415 LTVLEEDS---SGAVSSVLSL-TAVQHTLVVSHESGSIKVWRNDKF----MKSMQ------------THKGSVFAVFLEG 474 (552)
Q Consensus 415 ~~~~~~~~---~~~~~~~~~~-s~~~~~l~~g~~dg~i~iwd~~~~----~~~~~------------~h~~~v~~v~~~~ 474 (552)
........ ...+..-..| .++|++++ .+.+|.|++.|.... ...+. ........+..++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~ 291 (386)
T 3sjl_D 213 EITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 291 (386)
T ss_dssp EEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred EEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCC
Confidence 33221110 1111111234 46776555 556899999997432 22221 1122345566778
Q ss_pred CEEEEEeC----------CCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-C--eEEEEe-CCCeEEEEEecCCc
Q 008820 475 KWLFTGGW----------DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-G--KLFVGC-ADRTVKIALCNRQI 540 (552)
Q Consensus 475 ~~l~sgs~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~--~l~s~s-~Dg~v~iw~~~~~~ 540 (552)
+.++.... .+.|.+.|+.+.+....+.. ...+.++++++ + +|+++. .++.|.++|.. +.
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v------g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~-t~ 364 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM------GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE-SG 364 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE------EEEECEEEECSSSSCEEEEEETTTTEEEEEETT-TC
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC------CCCcceEEECCCCCeEEEEEcCCCCeEEEEECC-CC
Confidence 87777643 25799999999887776554 34577899984 3 366654 58999999987 45
Q ss_pred ceeEEE
Q 008820 541 PEIFSL 546 (552)
Q Consensus 541 ~~~~~~ 546 (552)
+.+.++
T Consensus 365 k~~~~i 370 (386)
T 3sjl_D 365 EELRSV 370 (386)
T ss_dssp CEEEEE
T ss_pred cEEEEe
Confidence 555444
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-09 Score=103.74 Aligned_cols=241 Identities=12% Similarity=0.102 Sum_probs=151.2
Q ss_pred CeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCC
Q 008820 282 FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD 361 (552)
Q Consensus 282 ~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d 361 (552)
+..+..+..+.....+++|+|+++.+++++..++.|..||..++ . ..+..... .....+++++++++++...+
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~---~~~~~~~~--~~~~l~~~~dg~l~v~~~~~ 89 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--L---SPEMHPSH--HQNGHCLNKQGHLIACSHGL 89 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--E---EEEESSCS--SEEEEEECTTCCEEEEETTT
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--e---EEEECCCC--CcceeeECCCCcEEEEecCC
Confidence 34455666677788999999988778899999999999998864 2 22221111 12234677888877777777
Q ss_pred CcEEEEECCCCceeEEecCC----CCCeEEEEEe-CC-EEEE----Ee-------------CCCcEEEEECCCCceeEEE
Q 008820 362 RTIKAWSLLDGTLSCTMSGH----KSAVSTLAVC-NG-VLYS----GS-------------RDGTIRLWSLSDHSLLTVL 418 (552)
Q Consensus 362 g~i~iwd~~~~~~~~~~~~h----~~~v~~l~~~-~~-~l~s----~~-------------~dg~i~iwd~~~~~~~~~~ 418 (552)
+.|.+||..+++........ ...+.+++++ ++ ++++ |+ ..+.|..+|.. ++. ..+
T Consensus 90 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~ 167 (296)
T 3e5z_A 90 RRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAP 167 (296)
T ss_dssp TEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEE
T ss_pred CeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEe
Confidence 89999999888765443221 2345678888 44 5554 22 13456666655 443 333
Q ss_pred ecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC---cc---eeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEe
Q 008820 419 EEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND---KF---MKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQE 490 (552)
Q Consensus 419 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~---~~---~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd 490 (552)
... ...... ++++|+++.+++.+.++.|++||.. +. ...+..+...+..+.+ +|+++++. ++.|.+||
T Consensus 168 ~~~-~~~~~g-i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~ 243 (296)
T 3e5z_A 168 IRD-RVKPNG-LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLT 243 (296)
T ss_dssp ECC-CSSEEE-EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEEC
T ss_pred ecC-CCCCcc-EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEEC
Confidence 322 223333 6899999998777778999999964 22 1223223334445554 77766555 88999999
Q ss_pred cCCCeeeeeeccCCCcccCcceEEEEEe-CC--eEEEEeCCCeEEEEEecCCcceeEE
Q 008820 491 LAGDEFEEDVIPTGAIPCGSVITALLYW-QG--KLFVGCADRTVKIALCNRQIPEIFS 545 (552)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~--~l~s~s~Dg~v~iw~~~~~~~~~~~ 545 (552)
..+. ....+... .. +++++|. ++ .|++++.+ .+|.++.....+..
T Consensus 244 ~~g~-~~~~~~~~-----~~-~~~~~f~~~d~~~L~v~t~~---~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 244 PDGD-ELGRVLTP-----QT-TSNLCFGGPEGRTLYMTVST---EFWSIETNVRGLEH 291 (296)
T ss_dssp TTSC-EEEEEECS-----SC-CCEEEEESTTSCEEEEEETT---EEEEEECSCCBCCC
T ss_pred CCCC-EEEEEECC-----CC-ceeEEEECCCCCEEEEEcCC---eEEEEEcccccccc
Confidence 8744 43333321 23 7788885 43 58888876 45666544444443
|
| >3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4.1e-13 Score=127.93 Aligned_cols=114 Identities=13% Similarity=0.137 Sum_probs=63.8
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
+|+. |+++.+..... .....||+.|+|||++... .....+++++|||||||++|+|+||+ ||.
T Consensus 149 ~kl~Dfg~~~~~~~~~~---~~~~~~t~~y~aPE~~~~~-----------~~~~~~~~~~Di~slG~il~~l~~g~~p~~ 214 (290)
T 3fme_A 149 VKMCDFGISGYLVDDVA---KDIDAGCKPYMAPERINPE-----------LNQKGYSVKSDIWSLGITMIELAILRFPYD 214 (290)
T ss_dssp EEBCCC------------------CCCCCCSCHHHHSCC-----------TTC--CCHHHHHHHHHHHHHHHHHTSCSSC
T ss_pred EEEeecCCccccccccc---ccccCCCccccChhhcChh-----------hcCcCCCcHHHHHHHHHHHHHHHHCCCCcc
Confidence 4555 45555544432 3445899999999997110 01345678999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..... ........... +.........++.+++.+||+.+|.+||++.++.+
T Consensus 215 ~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 215 SWGTP-------------------FQQLKQVVEEPSPQLPADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp CCSCH-------------------HHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred ccCch-------------------HHHHHHHhccCCCCcccccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 42111 00000100000 00011123445899999999999999999887655
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.29 E-value=7.2e-10 Score=103.92 Aligned_cols=233 Identities=10% Similarity=0.025 Sum_probs=147.9
Q ss_pred ceEEEEEc--CCEEE-EEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcc
Q 008820 254 CVTGLAVG--GGFLF-SSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP 330 (552)
Q Consensus 254 ~V~~l~~s--~~~l~-s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 330 (552)
...+++++ +++++ +.+.++.|.+||..+.........+...+.++++.+++. ++++.. ++.|.+||.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~-- 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQT-- 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCCE--
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceEe--
Confidence 56788887 66666 446788999999765543322223335678899988765 656655 889999997653221
Q ss_pred ccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeCCCcEEEEE
Q 008820 331 LKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRLWS 408 (552)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd 408 (552)
....... ....-.++.++++.+++...++.|.+|+..+.............+.+++++ ++ ++++...++.|.+||
T Consensus 101 --~~~~~~~-~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~ 177 (270)
T 1rwi_B 101 --VLPFDGL-NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE 177 (270)
T ss_dssp --ECCCCSC-SSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred --eeecCCc-CCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence 1111110 111234667788877777778899999865554433222333467889998 44 555555678999999
Q ss_pred CCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCccee-eee-cccceEEEEEe--cCCEEEEEeCCC
Q 008820 409 LSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMK-SMQ-THKGSVFAVFL--EGKWLFTGGWDK 484 (552)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~-~~~-~h~~~v~~v~~--~~~~l~sgs~dg 484 (552)
............. ...... ++++++|+++++...++.|.+||...... ... .+...+.++.+ +|+.+++...++
T Consensus 178 ~~~~~~~~~~~~~-~~~p~~-i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~ 255 (270)
T 1rwi_B 178 AESNNQVVLPFTD-ITAPWG-IAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGND 255 (270)
T ss_dssp TTTCCEEECCCSS-CCSEEE-EEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGT
T ss_pred cCCCceEeecccC-CCCceE-EEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCC
Confidence 8776544322221 123333 68999998777777788999999654322 222 23345667766 788888888899
Q ss_pred eEEEEecCCCe
Q 008820 485 TVSVQELAGDE 495 (552)
Q Consensus 485 ~i~iwd~~~~~ 495 (552)
.|++++....+
T Consensus 256 ~v~~~~~~~~~ 266 (270)
T 1rwi_B 256 RVVKLTSLEHH 266 (270)
T ss_dssp EEEEECCCGGG
T ss_pred EEEEEcCCCcc
Confidence 99999987653
|
| >3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* | Back alignment and structure |
|---|
Probab=99.28 E-value=8.6e-13 Score=131.35 Aligned_cols=47 Identities=23% Similarity=0.264 Sum_probs=38.8
Q ss_pred hhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHH
Q 008820 33 SDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKE 92 (552)
Q Consensus 33 ~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~ 92 (552)
....||+.|||||++ .+ ....++.++|||||||+||||++|+ ||...
T Consensus 193 ~~~~gt~~y~aPE~~------~~-------~~~~~~~~~DiwslG~il~el~~g~~pf~~~ 240 (389)
T 3gni_B 193 KYSVKVLPWLSPEVL------QQ-------NLQGYDAKSDIYSVGITACELANGHVPFKDM 240 (389)
T ss_dssp TTCTTTGGGSCHHHH------ST-------TSSCBCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred ccccccccccCHHHH------hc-------cCCCCCcHhHHHHHHHHHHHHHHCCCCCCCC
Confidence 445899999999999 22 1145778999999999999999999 99653
|
| >3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.3e-13 Score=129.31 Aligned_cols=92 Identities=20% Similarity=0.246 Sum_probs=62.4
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....||+.|||||++ .+ ..+++++|||||||+||||++|. |+...... +..+.....
T Consensus 233 ~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~il~el~~~~~~~~~~~~~-~~~~~~~~~----- 291 (332)
T 3qd2_B 233 HTGQVGTKLYMSPEQI------HG---------NNYSHKVDIFSLGLILFELLYSFSTQMERVRI-ITDVRNLKF----- 291 (332)
T ss_dssp CCSCC-CGGGSCHHHH------HC---------CCCCTHHHHHHHHHHHHHHHSCCCCHHHHHHH-HHHHHTTCC-----
T ss_pred ccccCCCcCccChHHh------cC---------CCCcchhhHHHHHHHHHHHHHcCCChhHHHHH-HHHhhccCC-----
Confidence 4567899999999999 22 45678999999999999999999 87553221 110000000
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
+ .. ... ..+.+.+++.+||+.+|.+||++.++.+
T Consensus 292 ----~-~~---~~~--------~~~~~~~li~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 292 ----P-LL---FTQ--------KYPQEHMMVQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp ----C-HH---HHH--------HCHHHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred ----C-cc---ccc--------CChhHHHHHHHHccCCCCcCCCHHHHhh
Confidence 0 00 001 1223788999999999999999887665
|
| >3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ... | Back alignment and structure |
|---|
Probab=99.28 E-value=6.6e-13 Score=130.76 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=64.6
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccc-----cCC
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVST-----KAS 105 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~-----~~~ 105 (552)
.....||+.|||||++ .+ ..++.++|||||||+||+|+||+ ||.......+..+.. ...
T Consensus 187 ~~~~~gt~~y~aPE~~------~~---------~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~ 251 (360)
T 3eqc_A 187 ANSFVGTRSYMSPERL------QG---------THYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAA 251 (360)
T ss_dssp ----CCCCTTCCHHHH------TT---------CCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC--------
T ss_pred ccCCCCCCCeECHHHH------cC---------CCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCC
Confidence 4567899999999999 32 55778999999999999999999 996543332211000 000
Q ss_pred Cchhhhh----------------hhhHHHHHHHHHHHhhh--hcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 106 DDNIACL----------------GMYMAWMEKVTYLLENK--FGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 106 ~~~~~~~----------------~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
+..+... ................. ......++.+++.+||+.+|.+||++.++.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 324 (360)
T 3eqc_A 252 ETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMV 324 (360)
T ss_dssp ----------------------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred CCCCCcccCCCcccccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence 0000000 00000011111000000 0112445899999999999999999887655
|
| >3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ... | Back alignment and structure |
|---|
Probab=99.28 E-value=9.5e-13 Score=127.94 Aligned_cols=59 Identities=20% Similarity=0.361 Sum_probs=45.3
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.|+. |+++.+..... .....||+.|+|||++ .+ ...+++++|||||||+||+|++|+ ||
T Consensus 170 ~kl~Dfg~a~~~~~~~~---~~~~~~~~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~~ll~g~~p~ 231 (330)
T 3nsz_A 170 LRLIDWGLAEFYHPGQE---YNVRVASRYFKGPELL------VD--------YQMYDYSLDMWSLGCMLASMIFRKEPF 231 (330)
T ss_dssp EEECCCTTCEECCTTCC---CCSCCSCGGGCCHHHH------TT--------CCCCCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred EEEEeCCCceEcCCCCc---cccccccccccChhhh------cC--------CCcCCchhhHHHHHHHHHHHHhCCCCc
Confidence 4555 55655544432 4567899999999998 22 245678999999999999999999 99
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.6e-08 Score=92.76 Aligned_cols=233 Identities=10% Similarity=0.066 Sum_probs=146.8
Q ss_pred ecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEe--CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCC
Q 008820 249 QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFK--GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF 324 (552)
Q Consensus 249 ~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~--~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 324 (552)
..+...+.+++++ +.++++...++.|..||.. ++. ..+. .....+.++++.+++ .++++...++.|..||. +
T Consensus 53 ~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~ 128 (299)
T 2z2n_A 53 PTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-D 128 (299)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-T
T ss_pred CcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-C
Confidence 3455778999997 6777766668899999976 333 2332 345678999998865 46677777889999997 3
Q ss_pred CCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEE-ecCCCCCeEEEEEe-CC-EEEEEeCC
Q 008820 325 PLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT-MSGHKSAVSTLAVC-NG-VLYSGSRD 401 (552)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~-~~-~l~s~~~d 401 (552)
+... ... ... .. ......++.++++..++...++.|..||. +++.... +..+...+.+++++ ++ +.++...+
T Consensus 129 g~~~-~~~-~~~-~~-~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 203 (299)
T 2z2n_A 129 GKIR-EYE-LPN-KG-SYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIG 203 (299)
T ss_dssp CCEE-EEE-CSS-TT-CCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTT
T ss_pred CCEE-Eec-CCC-CC-CCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCC
Confidence 3211 111 110 11 11223356677777776666789999998 6665543 33445568899998 44 44444457
Q ss_pred CcEEEEECCCCceeEEEecC-CCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcceeee--ecccceEEEEEe-cCCEE
Q 008820 402 GTIRLWSLSDHSLLTVLEED-SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSM--QTHKGSVFAVFL-EGKWL 477 (552)
Q Consensus 402 g~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~--~~h~~~v~~v~~-~~~~l 477 (552)
+.|..||. +++... +... ...... .++++++|++.++...++.|..||.......+ ..+...+.++.+ ++...
T Consensus 204 ~~i~~~~~-~g~~~~-~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~g~l~ 280 (299)
T 2z2n_A 204 NKIGRITT-SGEITE-FKIPTPNARPH-AITAGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICFDGETIW 280 (299)
T ss_dssp TEEEEECT-TCCEEE-EECSSTTCCEE-EEEECSTTCEEEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEECSSCEE
T ss_pred ceEEEECC-CCcEEE-EECCCCCCCce-eEEECCCCCEEEeccCCceEEEECCCCceEEEeCCCCCCccceEEecCCCEE
Confidence 89999999 666433 3222 122333 46889999866666577899999975433333 233455666665 55554
Q ss_pred EEEeCCCeEEEEecCCC
Q 008820 478 FTGGWDKTVSVQELAGD 494 (552)
Q Consensus 478 ~sgs~dg~i~iwd~~~~ 494 (552)
++. ..+.+..++..+.
T Consensus 281 v~~-~~~~l~~~~~~~~ 296 (299)
T 2z2n_A 281 FAM-ECDKIGKLTLIKD 296 (299)
T ss_dssp EEE-TTTEEEEEEEC--
T ss_pred EEe-cCCcEEEEEcCcc
Confidence 444 4677877887654
|
| >3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-13 Score=138.03 Aligned_cols=117 Identities=20% Similarity=0.272 Sum_probs=67.0
Q ss_pred hhcc--cccccccccchh-hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 14 AKVG--CVGSRICDKEVG-LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
+|+. |+|+.+...... ...+...||+.|||||++ .+ ......+.++|||||||+||||+| |+ |
T Consensus 162 ~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l------~~------~~~~~~t~~~DiwSlG~il~ellt~g~~p 229 (432)
T 3p23_A 162 AMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEML------SE------DCKENPTYTVDIFSAGCVFYYVISEGSHP 229 (432)
T ss_dssp EEECCTTEEECC------------CCSCTTSCCGGGT------SC------C---CCCTHHHHHHHHHHHHHHHTTSCBT
T ss_pred EEEecccceeeccCCCcceeeccccCCCcCccChhhh------hc------ccccCCCcHHHHHHHHHHHHHHHcCCCCC
Confidence 4555 566665543211 235678899999999998 21 012455679999999999999999 88 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
|..........+...... .... + .......+.+++.+||+.+|.+||++.++.+
T Consensus 230 f~~~~~~~~~~~~~~~~~---~~~~-~--------------~~~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 230 FGKSLQRQANILLGACSL---DCLH-P--------------EKHEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp TBSTTTHHHHHHTTCCCC---TTSC-T--------------TCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cchhhHHHHHHHhccCCc---cccC-c--------------cccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 965433221100110000 0000 0 0001112778999999999999999887654
|
| >3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-12 Score=132.50 Aligned_cols=41 Identities=24% Similarity=0.441 Sum_probs=30.5
Q ss_pred hhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh
Q 008820 31 FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI 85 (552)
Q Consensus 31 ~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt 85 (552)
.++..+||+.|||||++ .+ ...++.++|||||||+||||+|
T Consensus 239 ~~~~~~gt~~Y~aPE~~------~~--------~~~~~~~~DiwSlG~il~ellt 279 (458)
T 3rp9_A 239 QLTGHVVTRWYRAPELI------LL--------QENYTEAIDVWSIGCIFAELLN 279 (458)
T ss_dssp ------CCCTTCCHHHH------TT--------CCCCCTHHHHHHHHHHHHHHHT
T ss_pred cccCCcccccccChHHh------hC--------CCCCCcHhHHHHHHHHHHHHHH
Confidence 36778999999999987 11 2457789999999999999999
|
| >3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-12 Score=128.86 Aligned_cols=129 Identities=9% Similarity=0.099 Sum_probs=65.3
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++...... ......||+.|+|||++ .+ ...++.++|||||||++|+|++|+ ||.
T Consensus 173 ~kl~Dfg~~~~~~~~~---~~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~il~~l~~g~~pf~ 235 (362)
T 3pg1_A 173 ITICDFNLAREDTADA---NKTHYVTHRWYRAPELV------MQ--------FKGFTKLVDMWSAGCVMAEMFNRKALFR 235 (362)
T ss_dssp EEECCTTC------------------CGGGCCHHHH------TT--------CTTCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred EEEEecCccccccccc---ccceecccceecCcHHh------cC--------CCCCCcHhHHHhHHHHHHHHHhCCCCCC
Confidence 4555 4454333332 25667899999999998 22 245678999999999999999999 996
Q ss_pred HHHhhhh----hhccccCCCchhhhhhhhHHHHHHHHH--------HHhhhhcCccccHHHHHHhhcccCCCCCcchhhH
Q 008820 91 KELIDYI----RCVSTKASDDNIACLGMYMAWMEKVTY--------LLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNV 158 (552)
Q Consensus 91 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~ 158 (552)
....... ...........+..+.. ......... ..........+.+.+++.+||+.+|.+||++.++
T Consensus 236 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~el 314 (362)
T 3pg1_A 236 GSTFYNQLNKIVEVVGTPKIEDVVMFSS-PSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQA 314 (362)
T ss_dssp CSSHHHHHHHHHHHHCCCCHHHHHHTSC-HHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCHHHHHHHHHHHcCCCChHHhhhccc-hhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHH
Confidence 5432211 10000000000000000 000000000 0001111234458899999999999999998876
Q ss_pred HH
Q 008820 159 WK 160 (552)
Q Consensus 159 ~~ 160 (552)
.+
T Consensus 315 l~ 316 (362)
T 3pg1_A 315 LR 316 (362)
T ss_dssp HT
T ss_pred Hc
Confidence 55
|
| >2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-12 Score=138.94 Aligned_cols=117 Identities=17% Similarity=0.199 Sum_probs=76.1
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
.+|+. |+++.+...... ..+...||+.|||||++. ...++.++|||||||+||||++ |+ |
T Consensus 529 ~vkL~DFG~a~~~~~~~~~-~~~~~~~t~~y~aPE~~~---------------~~~~~~~~DiwSlG~il~ellt~g~~P 592 (656)
T 2j0j_A 529 CVKLGDFGLSRYMEDSTYY-KASKGKLPIKWMAPESIN---------------FRRFTSASDVWMFGVCMWEILMHGVKP 592 (656)
T ss_dssp EEEECCCCCCCSCCC-----------CCGGGCCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTSCCT
T ss_pred CEEEEecCCCeecCCCcce-eccCCCCCcceeCHHHhc---------------CCCCCchhhHHHHHHHHHHHHHcCCCC
Confidence 35666 667666554332 245667899999999992 2456789999999999999997 99 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|.+.....+. ..+... ...........+.+++.+||+.+|.+||++.++.+.+..++
T Consensus 593 f~~~~~~~~~---------------------~~i~~~~~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il 650 (656)
T 2j0j_A 593 FQGVKNNDVI---------------------GRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTIL 650 (656)
T ss_dssp TTTCCHHHHH---------------------HHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHH---------------------HHHHcCCCCCCCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 9764332110 000000 00111223446899999999999999999999999888775
|
| >2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-12 Score=128.58 Aligned_cols=114 Identities=22% Similarity=0.321 Sum_probs=66.8
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhh-hh---cccc-CC
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYI-RC---VSTK-AS 105 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~-~~---~~~~-~~ 105 (552)
...+.||+.|||||++. + ...++.++|||||||+||+|++|+ ||.+...... .. +.+. ..
T Consensus 179 ~~~~~gt~~y~aPE~~~------~--------~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~ 244 (353)
T 2b9h_A 179 MVEFVATRWYRAPEVML------T--------SAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHS 244 (353)
T ss_dssp -CCCCCCGGGCCHHHHH------S--------CCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCS
T ss_pred hhhccccccccCCeeec------c--------CCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCch
Confidence 44578999999999982 1 245678999999999999999999 9965432211 00 0000 00
Q ss_pred CchhhhhhhhHHHHHHHHHH-------HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 106 DDNIACLGMYMAWMEKVTYL-------LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
...+.... .....+..... ..........++.+++.+||+.+|.+||++.++.+
T Consensus 245 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (353)
T 2b9h_A 245 DNDLRCIE-SPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE 305 (353)
T ss_dssp TTTTTTCC-CHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred hccccccc-cchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 00000000 00000100000 01111234456889999999999999999887665
|
| >3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-12 Score=130.05 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=34.7
Q ss_pred hhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 31 FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 31 ~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.++..+||+.|||||++ .+ ...++.++|||||||+||||++|. ||
T Consensus 207 ~~~~~~gt~~Y~APE~~------~~--------~~~~~~~~DiwSlG~il~ell~g~~p~ 252 (432)
T 3n9x_A 207 QLTSHVVTRWYRAPELI------LL--------QENYTKSIDIWSTGCIFAELLNMLQSH 252 (432)
T ss_dssp ----CCCCCTTCCHHHH------TT--------CSCCCTHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccCCCCCccccCHHHH------hc--------CCCCCcccccchHHHHHHHHHhccccc
Confidence 35788999999999997 11 245778999999999999999865 55
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.2e-09 Score=114.81 Aligned_cols=240 Identities=13% Similarity=0.086 Sum_probs=146.9
Q ss_pred CccceEEEEEc--CCEEEEEeCC-----CcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCc-------
Q 008820 251 HRDCVTGLAVG--GGFLFSSSFD-----KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGG------- 316 (552)
Q Consensus 251 H~~~V~~l~~s--~~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~------- 316 (552)
|...+.+++|+ |++|+.++.+ .+|++||+.+++.+... .+...+..++|+|+ ..+ +.++.|+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l-~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DAL-LYSRFAEPKEGQAFQ 237 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEE-EEEECCCC-------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEE-EEEEecCcccccccc
Confidence 44568889999 8888877654 46999999999876532 12222357899998 655 44444443
Q ss_pred -------EEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCC-----cEEEEECCCC--ceeEEecCCC
Q 008820 317 -------IFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR-----TIKAWSLLDG--TLSCTMSGHK 382 (552)
Q Consensus 317 -------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg-----~i~iwd~~~~--~~~~~~~~h~ 382 (552)
|++|++.++.....+ .+..........-..++++|++|+..+.++ .|++||+.++ ++...+..+.
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 316 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQP-VFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL 316 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEE-EECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS
T ss_pred cCCCCCEEEEEECCCCchhCEE-EeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC
Confidence 889998765432111 111111101122347899999887776544 8999999877 4144555555
Q ss_pred CCeEEEEEe-CCEEEEEeCC----CcEEEEECCCC-ceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEe--C-
Q 008820 383 SAVSTLAVC-NGVLYSGSRD----GTIRLWSLSDH-SLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR--N- 453 (552)
Q Consensus 383 ~~v~~l~~~-~~~l~s~~~d----g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd--~- 453 (552)
..+....+. ++.|+..+.+ +.|.+||+.++ .....+..+....+.. +.++ ++.++++...|+..++|. .
T Consensus 317 ~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~-~~~~-~~~lv~~~~~dg~~~l~~~~~~ 394 (741)
T 1yr2_A 317 KAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLES-VGIA-GNRLFASYIHDAKSQVLAFDLD 394 (741)
T ss_dssp SSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEE-EEEE-BTEEEEEEEETTEEEEEEEETT
T ss_pred CceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEE-EEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence 545544444 5677666653 45999999875 2334443333333333 3555 566778888898877774 3
Q ss_pred Ccceeeeec-ccceEEEEEe--cCCEEE-EEe---CCCeEEEEecCCCee
Q 008820 454 DKFMKSMQT-HKGSVFAVFL--EGKWLF-TGG---WDKTVSVQELAGDEF 496 (552)
Q Consensus 454 ~~~~~~~~~-h~~~v~~v~~--~~~~l~-sgs---~dg~i~iwd~~~~~~ 496 (552)
++....+.. +.+.+..+++ +++.++ +.+ ..++|++||+.+++.
T Consensus 395 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 395 GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp SCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 334455554 3566777765 666554 332 347899999988764
|
| >2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-12 Score=126.55 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=62.9
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
+|+. |+++.+..... .....||+.|+|||++..... ....+++++|||||||+||||++|+ ||.
T Consensus 164 ~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~----------~~~~~~~~~Di~slG~il~~l~~g~~pf~ 230 (318)
T 2dyl_A 164 IKLCDFGISGRLVDDKA---KDRSAGCAAYMAPERIDPPDP----------TKPDYDIRADVWSLGISLVELATGQFPYK 230 (318)
T ss_dssp EEECCCTTC-----------------CCTTCCHHHHC------------------CCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred EEEEECCCchhccCCcc---ccccCCCccccChhhcccccc----------cccCCccccchhhHHHHHHHHHhCCCCCC
Confidence 4555 44554444322 456789999999999821100 1245678999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhh---hhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLEN---KFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
...... ............ .......++.+++.+||+.+|.+||++.++.+
T Consensus 231 ~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 231 NCKTDF--------------------EVLTKVLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp TCCSHH--------------------HHHHHHHHSCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred CCCccH--------------------HHHHHHhccCCCCCCccCCCCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 521110 000000000000 01123445999999999999999999887655
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-13 Score=135.58 Aligned_cols=257 Identities=19% Similarity=0.125 Sum_probs=140.1
Q ss_pred EEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCC
Q 008820 259 AVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEK 338 (552)
Q Consensus 259 ~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 338 (552)
+..++.+++++.||.|+.||..+|+.+.++.. +.+.+..+..++ .++++++.||.|+.||..+++...........
T Consensus 6 ~v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~- 81 (369)
T 2hz6_A 6 TLPETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE- 81 (369)
T ss_dssp --CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHH-
T ss_pred eeeCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeeccCcc-
Confidence 34588999999999999999999999999886 455554455544 45677789999999999877653322111000
Q ss_pred CceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEeCCCcEEEEECCCCceeEEE
Q 008820 339 DWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVL 418 (552)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 418 (552)
...... .+ ..+..+++|+.|+.|+.||.++|+.++.+..+.. +. .+-.++.+++++.|+.|+.||.++++.+..+
T Consensus 82 ~~~~sp--~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~-~~-~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 82 LVQASP--CR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA-DS-LSPSTSLLYLGRTEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp HHTTCS--CC------CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred ccccCc--eE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc-cc-ccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence 000000 01 1345788889999999999999999988875542 11 1113668999999999999999999987766
Q ss_pred ecCCCCceEEEEEEcCCC---CEEEEEECCCcEEEEeCCc--ceeeeecccceEEEE-Ee--cCCEE----EEEeCCCeE
Q 008820 419 EEDSSGAVSSVLSLTAVQ---HTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAV-FL--EGKWL----FTGGWDKTV 486 (552)
Q Consensus 419 ~~~~~~~~~~~~~~s~~~---~~l~~g~~dg~i~iwd~~~--~~~~~~~h~~~v~~v-~~--~~~~l----~sgs~dg~i 486 (552)
..... .. ..+..+. ..+++++.||.|+.||..+ .+.... ...++..+ .. ++... +.+ ++.+
T Consensus 157 ~~~~~---~~-~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~~~v~~~~~~--~~~l 229 (369)
T 2hz6_A 157 TYFDY---AA-SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVAFYVWQREGLRKVMHINVA--VETL 229 (369)
T ss_dssp EEEEE---CC-BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEEEEECTTSSCEEECCEEEE--HHHH
T ss_pred ecccc---cC-ccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEEEEEecCCceEeccceeec--ccce
Confidence 53211 11 1233322 5677889999999999643 333333 23344332 22 33221 112 3456
Q ss_pred EEEecCCCe----eeeeeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEec
Q 008820 487 SVQELAGDE----FEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCN 537 (552)
Q Consensus 487 ~iwd~~~~~----~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~ 537 (552)
+.+|..+++ .......... +.+....++.+++++.||.++.++..
T Consensus 230 ~~ld~~tG~~~~~~~W~~~~~~~------~~sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 230 RYLTFMSGEVGRITKWKYPFPKE------TEAKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp HHHHHHHHHHHHHHTSCCCCCCH------HHHHHHSEEEECBEECSSCEECCEEE
T ss_pred eeeehhcCCcccceeeeeccCcc------ccccccccceEEEecccCCEEecCcc
Confidence 677776665 4433332211 11111235779999999999998876
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-09 Score=114.49 Aligned_cols=279 Identities=11% Similarity=0.074 Sum_probs=179.7
Q ss_pred EcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCC-----------eEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCC
Q 008820 260 VGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHK-----------VMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328 (552)
Q Consensus 260 ~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~-----------v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 328 (552)
..+..++.++.++.|..+|..+|+.+.++...... ...+++. + ..++.++.|+.+..+|..+++..
T Consensus 75 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~--~-~~v~v~~~dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 75 VVDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--K-GKVYVGAWDGRLIALDAATGKEV 151 (677)
T ss_dssp EETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--T-TEEEEECTTSEEEEEETTTCCEE
T ss_pred EECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEE--C-CEEEEEcCCCEEEEEECCCCCEE
Confidence 34778888888999999999999999998654220 1223332 2 36778889999999999988765
Q ss_pred cccccc-ccCCCceeeeEEEEeeCCCEEEEeeC------CCcEEEEECCCCceeEEecCCCCC-----------------
Q 008820 329 EPLKKW-NEEKDWRYSGIHALTTSGRYLYTGSG------DRTIKAWSLLDGTLSCTMSGHKSA----------------- 384 (552)
Q Consensus 329 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~sgs~------dg~i~iwd~~~~~~~~~~~~h~~~----------------- 384 (552)
...... .......... .....+..+++++. +|.|+.+|..+|+.+..+......
T Consensus 152 W~~~~~~~~~~~~~~~~--~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITG--APRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEEETTTTCCSSCBCCS--CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred eeecCCcCcCcCccccc--CcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 544432 1000000000 01112455666553 799999999999999887542211
Q ss_pred ---------------eEEEEEe--CCEEEEEeCCC-------------------cEEEEECCCCceeEEEecCCCC----
Q 008820 385 ---------------VSTLAVC--NGVLYSGSRDG-------------------TIRLWSLSDHSLLTVLEEDSSG---- 424 (552)
Q Consensus 385 ---------------v~~l~~~--~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~---- 424 (552)
...++++ .+.++.+..++ +|..+|.++|+.+..+...+..
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~ 309 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDY 309 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccc
Confidence 1246666 45888777664 5999999999999888753221
Q ss_pred ---ceEEEEEEcCCC---CEEEEEECCCcEEEEeCC--cceeeeeccc-----------ce-------------------
Q 008820 425 ---AVSSVLSLTAVQ---HTLVVSHESGSIKVWRND--KFMKSMQTHK-----------GS------------------- 466 (552)
Q Consensus 425 ---~~~~~~~~s~~~---~~l~~g~~dg~i~iwd~~--~~~~~~~~h~-----------~~------------------- 466 (552)
....+.....+| ..++.++.+|.++++|.. +.+..+.... .+
T Consensus 310 ~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~ 389 (677)
T 1kb0_A 310 TSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGP 389 (677)
T ss_dssp CCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCT
T ss_pred ccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCc
Confidence 111223344467 688999999999999954 3433322110 01
Q ss_pred -------EEEEEecCCEEEEEeC-------------------------------------------CCeEEEEecCCCee
Q 008820 467 -------VFAVFLEGKWLFTGGW-------------------------------------------DKTVSVQELAGDEF 496 (552)
Q Consensus 467 -------v~~v~~~~~~l~sgs~-------------------------------------------dg~i~iwd~~~~~~ 496 (552)
-.++++++.++++... .|.|..||+.+++.
T Consensus 390 ~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~ 469 (677)
T 1kb0_A 390 YGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA 469 (677)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE
T ss_pred ccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE
Confidence 1234456677776543 27899999999988
Q ss_pred eeeeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEecCCcceeEEEec
Q 008820 497 EEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCNRQIPEIFSLLL 548 (552)
Q Consensus 497 ~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~~~~~~~~~~~g 548 (552)
.......... .. ..+...++.+++++.||.+++||.. +++.+.++.-
T Consensus 470 ~W~~~~~~~~--~~--g~~~~~g~~v~~g~~dg~l~a~D~~-tG~~lw~~~~ 516 (677)
T 1kb0_A 470 AWSVEHVSPW--NG--GTLTTAGNVVFQGTADGRLVAYHAA-TGEKLWEAPT 516 (677)
T ss_dssp EEEEEESSSC--CC--CEEEETTTEEEEECTTSEEEEEETT-TCCEEEEEEC
T ss_pred EeecCCCCCC--cC--cceEeCCCEEEEECCCCcEEEEECC-CCceeeeeeC
Confidence 8776543211 11 1233346788899999999999998 6777777753
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.7e-09 Score=103.33 Aligned_cols=263 Identities=13% Similarity=0.012 Sum_probs=176.6
Q ss_pred CcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEc---------CCCcEEEEeCCCCCCCccccccccCCC--c
Q 008820 272 KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGD---------SGGGIFVWSFSFPLGHEPLKKWNEEKD--W 340 (552)
Q Consensus 272 g~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~--~ 340 (552)
++|.+.|..+++.+.++..-..+ .++++|++..++++.. .++.|.++|..+.+....+........ .
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g 176 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG 176 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence 68999999999999999866666 8999999987777653 477999999988765444432100000 0
Q ss_pred eeeeEEEEeeCCCEEEEeeC--CCcEEEEECCCCceeEEecCCCCCeEEEEEe-CCEEEEEeCCCcEEEEECCCCceeEE
Q 008820 341 RYSGIHALTTSGRYLYTGSG--DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHSLLTV 417 (552)
Q Consensus 341 ~~~~~~~~~~~~~~l~sgs~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~ 417 (552)
....-..+++++++++++.. ++.|.+.|+.+++.+.++.... ...+.-. ...+++.+.||++.+.+..+++....
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--CYHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 00112378999998888764 5789999999999998886422 1122222 44777888999999999966665532
Q ss_pred E----ecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcc-e---eeee------------cccceEEEEEecCCEE
Q 008820 418 L----EEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF-M---KSMQ------------THKGSVFAVFLEGKWL 477 (552)
Q Consensus 418 ~----~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~---~~~~------------~h~~~v~~v~~~~~~l 477 (552)
. ... .........+.+++..++..+..+.+.+.|.... . ..+. ........++++++.+
T Consensus 255 ~~~~~~v~-~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rl 333 (426)
T 3c75_H 255 NTEVFHTE-DELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRI 333 (426)
T ss_dssp ECCCCSCT-TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEE
T ss_pred eeeeeccC-CCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEE
Confidence 2 111 1111112467888888877788899999996421 1 1111 1111124667788877
Q ss_pred EEEeC----------CCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--C-eEEEEe-CCCeEEEEEecCCccee
Q 008820 478 FTGGW----------DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--G-KLFVGC-ADRTVKIALCNRQIPEI 543 (552)
Q Consensus 478 ~sgs~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~-~l~s~s-~Dg~v~iw~~~~~~~~~ 543 (552)
+.... ++.|.+.|..+.+....+.. ......+.|++ . +++++. .++.|.++|.. +.+.+
T Consensus 334 yVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v------g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~-t~kvv 406 (426)
T 3c75_H 334 YLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL------GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAA-TGEEL 406 (426)
T ss_dssp EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE------EEEECEEEECCSSSCEEEEEETTTTEEEEEETT-TCCEE
T ss_pred EEEecccccccccCCCCEEEEEECCCCeEEEEEEC------CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECC-CCCEE
Confidence 76542 35799999999887766543 23477888884 3 577777 59999999997 56666
Q ss_pred EEE
Q 008820 544 FSL 546 (552)
Q Consensus 544 ~~~ 546 (552)
.++
T Consensus 407 ~tI 409 (426)
T 3c75_H 407 RSV 409 (426)
T ss_dssp EEE
T ss_pred EEe
Confidence 665
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.1e-09 Score=110.98 Aligned_cols=268 Identities=13% Similarity=0.068 Sum_probs=169.1
Q ss_pred eEEEeeCCCeEEEEEeecCccc----------e-EEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCC--CC---CeE
Q 008820 233 DLVNGLSKGNVKFKDLQGHRDC----------V-TGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGH--DH---KVM 296 (552)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~H~~~----------V-~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h--~~---~v~ 296 (552)
.+..........+|.+..+... + ..+++.+..++.++.|+.|..+|.++|+.+..+... .. .+.
T Consensus 81 ~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~ 160 (689)
T 1yiq_A 81 VVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTIT 160 (689)
T ss_dssp CEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCC
T ss_pred eEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCcccc
Confidence 3444444445567887654321 1 234556888999999999999999999999888653 11 111
Q ss_pred E-EEEecCCCCEEEEEc------CCCcEEEEeCCCCCCCccccccccCC--------------------------Cceee
Q 008820 297 A-VVYVDEDQPLCISGD------SGGGIFVWSFSFPLGHEPLKKWNEEK--------------------------DWRYS 343 (552)
Q Consensus 297 ~-v~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~--------------------------~~~~~ 343 (552)
+ ... . ++.+ +.++ .+|.|..||..+++............ ....-
T Consensus 161 ~sP~v-~-~g~v-~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w 237 (689)
T 1yiq_A 161 GAPRV-V-NGKV-VIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAW 237 (689)
T ss_dssp SCCEE-E-TTEE-EECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCC
T ss_pred CCcEE-E-CCEE-EEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccc
Confidence 1 111 1 3333 3443 37899999999887554433211000 00001
Q ss_pred eEEEEeeCCCEEEEeeCCCc-------------------EEEEECCCCceeEEecC--CC-------CCeEEEEEe-CC-
Q 008820 344 GIHALTTSGRYLYTGSGDRT-------------------IKAWSLLDGTLSCTMSG--HK-------SAVSTLAVC-NG- 393 (552)
Q Consensus 344 ~~~~~~~~~~~l~sgs~dg~-------------------i~iwd~~~~~~~~~~~~--h~-------~~v~~l~~~-~~- 393 (552)
...++.++.+.++.++.++. |..+|.++|+.+..+.. |. .+....... ++
T Consensus 238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 13466777788888887764 99999999999998754 21 112112221 33
Q ss_pred ---EEEEEeCCCcEEEEECCCCceeEEEecCCCCc-------------------------------------eEEEEEEc
Q 008820 394 ---VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGA-------------------------------------VSSVLSLT 433 (552)
Q Consensus 394 ---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~s 433 (552)
.++.++.+|.++++|.++|+.+.......... ....++++
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 68899999999999999999886544321000 01114788
Q ss_pred CCCCEEEEEEC---------------------------------------------CCcEEEEeCCc--ceeeeecccce
Q 008820 434 AVQHTLVVSHE---------------------------------------------SGSIKVWRNDK--FMKSMQTHKGS 466 (552)
Q Consensus 434 ~~~~~l~~g~~---------------------------------------------dg~i~iwd~~~--~~~~~~~h~~~ 466 (552)
|+..++++... +|.|+.||+.+ .+..+..+...
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~ 477 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF 477 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc
Confidence 88888887632 36788999654 34444433322
Q ss_pred EE-EEEecCCEEEEEeCCCeEEEEecCCCeeeeeeccC
Q 008820 467 VF-AVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPT 503 (552)
Q Consensus 467 v~-~v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~ 503 (552)
.. .+...+..++.|+.||.++.||.++++....+...
T Consensus 478 ~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 478 NGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 11 34457889999999999999999999988776654
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.5e-09 Score=113.95 Aligned_cols=280 Identities=11% Similarity=0.080 Sum_probs=176.9
Q ss_pred EcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCC----------e-EEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCC
Q 008820 260 VGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHK----------V-MAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328 (552)
Q Consensus 260 ~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~----------v-~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 328 (552)
..+..++.++.++.|..+|..+|+.+..+..+... + ..+++. + ..++.++.|+.|..+|..+++..
T Consensus 68 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~-g~v~v~~~dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 68 VVDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW--K-GKVYVGVLDGRLEAIDAKTGQRA 144 (689)
T ss_dssp EETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--T-TEEEEECTTSEEEEEETTTCCEE
T ss_pred EECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE--C-CEEEEEccCCEEEEEECCCCCEe
Confidence 34788888888999999999999999998654321 1 122221 2 36778889999999999988765
Q ss_pred cccccc-ccCCCceeeeEEEEeeCCCEEEEee------CCCcEEEEECCCCceeEEecCCC-------------------
Q 008820 329 EPLKKW-NEEKDWRYSGIHALTTSGRYLYTGS------GDRTIKAWSLLDGTLSCTMSGHK------------------- 382 (552)
Q Consensus 329 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~sgs------~dg~i~iwd~~~~~~~~~~~~h~------------------- 382 (552)
...... ........... -...+ ..+++++ .+|.|+.||.++|+.+..+....
T Consensus 145 W~~~~~~~~~~~~~~~~s-P~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 222 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGA-PRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW 222 (689)
T ss_dssp EEEECCSCTTSCCBCCSC-CEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred eeecCcCCCCCCccccCC-cEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence 444332 11000000000 01123 4455554 37899999999999998875210
Q ss_pred ------------CCeEEEEEe--CCEEEEEeCCCc-------------------EEEEECCCCceeEEEecCCCC-----
Q 008820 383 ------------SAVSTLAVC--NGVLYSGSRDGT-------------------IRLWSLSDHSLLTVLEEDSSG----- 424 (552)
Q Consensus 383 ------------~~v~~l~~~--~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~----- 424 (552)
.....++++ .++++.+..++. |..+|.++|+.+..+...+..
T Consensus 223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~ 302 (689)
T 1yiq_A 223 FGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYT 302 (689)
T ss_dssp CSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCC
T ss_pred CCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccccccc
Confidence 011246676 468888887764 999999999999888753211
Q ss_pred --ceEEEEEEcCCCC---EEEEEECCCcEEEEeCC--cceeeeec-------c---------------------cc----
Q 008820 425 --AVSSVLSLTAVQH---TLVVSHESGSIKVWRND--KFMKSMQT-------H---------------------KG---- 465 (552)
Q Consensus 425 --~~~~~~~~s~~~~---~l~~g~~dg~i~iwd~~--~~~~~~~~-------h---------------------~~---- 465 (552)
..........+|+ .++.++.+|.++++|.. +.+..... + ..
T Consensus 303 ~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~ 382 (689)
T 1yiq_A 303 ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT 382 (689)
T ss_dssp CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES
T ss_pred CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeC
Confidence 1111123334554 78889999999999954 33311110 0 00
Q ss_pred ---------eEEEEEecCCEEEEEeC---------------------------------------------CCeEEEEec
Q 008820 466 ---------SVFAVFLEGKWLFTGGW---------------------------------------------DKTVSVQEL 491 (552)
Q Consensus 466 ---------~v~~v~~~~~~l~sgs~---------------------------------------------dg~i~iwd~ 491 (552)
.-.+++++...+++.+. +|.|+.||+
T Consensus 383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~ 462 (689)
T 1yiq_A 383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP 462 (689)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence 00234445556665422 478999999
Q ss_pred CCCeeeeeeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEecCCcceeEEEecc
Q 008820 492 AGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCNRQIPEIFSLLLH 549 (552)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~~~~~~~~~~~gh 549 (552)
.+++........... .. ..+...++.+++|+.||.++.||.+ +++.+.++...
T Consensus 463 ~tG~~~W~~~~~~~~--~~--g~~~tagglvf~gt~dg~l~a~D~~-tG~~lw~~~~~ 515 (689)
T 1yiq_A 463 VKQQAAWEVPYVTIF--NG--GTLSTAGNLVFEGSADGRVIAYAAD-TGEKLWEQPAA 515 (689)
T ss_dssp TTTEEEEEEEESSSC--CC--CEEEETTTEEEEECTTSEEEEEETT-TCCEEEEEECS
T ss_pred CCCCeEeEccCCCCc--cC--ccceECCCEEEEECCCCcEEEEECC-CCccceeeeCC
Confidence 999888776543221 11 1333447889999999999999998 67788777644
|
| >2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-12 Score=124.44 Aligned_cols=102 Identities=20% Similarity=0.327 Sum_probs=70.1
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+.... .....||+.|+|||++.. ....+.++|||||||+||||++|+ ||.
T Consensus 179 ~kl~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~--------------~~~~~~~~Di~slG~il~~l~~g~~pf~ 240 (312)
T 2iwi_A 179 AKLIDFGSGALLHDEP----YTDFDGTRVYSPPEWISR--------------HQYHALPATVWSLGILLYDMVCGDIPFE 240 (312)
T ss_dssp EEECCCSSCEECCSSC----BCCCCSCTTTSCHHHHHH--------------SCBCHHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred EEEEEcchhhhcccCc----ccccCCcccccCceeeec--------------CCCCCccchHHHHHHHHHHHHHCCCCCC
Confidence 4555 4555554432 456789999999999831 122245899999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..... +. .. ..........+.+++.+||+.+|.+||++.++.+
T Consensus 241 ~~~~~-~~---~~-----------------------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 241 RDQEI-LE---AE-----------------------LHFPAHVSPDCCALIRRCLAPKPSSRPSLEEILL 283 (312)
T ss_dssp SHHHH-HH---TC-----------------------CCCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred ChHHH-hh---hc-----------------------cCCcccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 53321 00 00 0001112335889999999999999999988765
|
| >2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.4e-12 Score=124.48 Aligned_cols=134 Identities=18% Similarity=0.166 Sum_probs=72.9
Q ss_pred hhhcc--cccccccccch-hhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C
Q 008820 13 VAKVG--CVGSRICDKEV-GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p 88 (552)
.+|+. |+++.+..... ........||+.|+|||++. + ...+++++|||||||+||||++|+ |
T Consensus 159 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~------~--------~~~~~~~~Di~slG~il~el~~g~~p 224 (320)
T 2i6l_A 159 VLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLL------S--------PNNYTKAIDMWAAGCIFAEMLTGKTL 224 (320)
T ss_dssp EEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHH------C--------TTCCCHHHHHHHHHHHHHHHHHSSCS
T ss_pred eEEEccCccccccCCCcccccccccccccccccCcHHhc------C--------cccCCchhhhHhHHHHHHHHHhCCCC
Confidence 45565 55555443211 11245667899999999982 1 245678999999999999999999 9
Q ss_pred chHHHhhhh-hhc-cccCCC--chhh-hhhh-hHHHHHHHHH--H-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHH
Q 008820 89 FTKELIDYI-RCV-STKASD--DNIA-CLGM-YMAWMEKVTY--L-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVW 159 (552)
Q Consensus 89 f~~~~~~~~-~~~-~~~~~~--~~~~-~~~~-~~~~~~~~~~--~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~ 159 (552)
|........ ..+ .....+ ..+. .... +......... . ..........++.+++.+||+.+|.+||++.++.
T Consensus 225 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell 304 (320)
T 2i6l_A 225 FAGAHELEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEAL 304 (320)
T ss_dssp SCCSSHHHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHh
Confidence 965432211 100 000000 0000 0000 0000000000 0 0011122345699999999999999999988775
Q ss_pred H
Q 008820 160 K 160 (552)
Q Consensus 160 ~ 160 (552)
+
T Consensus 305 ~ 305 (320)
T 2i6l_A 305 S 305 (320)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.7e-12 Score=122.16 Aligned_cols=129 Identities=15% Similarity=0.206 Sum_probs=78.8
Q ss_pred hhcc--cccccccccchh-hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 14 AKVG--CVGSRICDKEVG-LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.|+. |+++.+...... .......||+.|+|||++. ...++.++|||||||+||||+||+ ||
T Consensus 184 ~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------------~~~~~~~~Di~slG~il~el~tg~~~~ 248 (326)
T 2w1i_A 184 VKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLT---------------ESKFSVASDVWSFGVVLYELFTYIEKS 248 (326)
T ss_dssp EEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHH---------------HCEEEHHHHHHHHHHHHHHHHHTTCGG
T ss_pred EEEecCcchhhccccccccccccCCCCceeEECchhhc---------------CCCCCchhhHHHHHHHHHHHHhcCCCC
Confidence 4455 455554433221 1234467889999999992 244678999999999999999999 98
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHh-----hhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLE-----NKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~ 164 (552)
..........+..... ............. +.......++.+++.+||+.+|.+||++.++.+.+.+
T Consensus 249 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~ 319 (326)
T 2w1i_A 249 KSPPAEFMRMIGNDKQ---------GQMIVFHLIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQ 319 (326)
T ss_dssp GSHHHHHHHHHCTTCC---------THHHHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHH
T ss_pred CCCHHHHHHhhccccc---------hhhhHHHHHHHhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHH
Confidence 6533221110000000 0011111111111 1112234569999999999999999999999998877
Q ss_pred hh
Q 008820 165 LI 166 (552)
Q Consensus 165 ~~ 166 (552)
+.
T Consensus 320 l~ 321 (326)
T 2w1i_A 320 IR 321 (326)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.8e-12 Score=121.95 Aligned_cols=101 Identities=15% Similarity=0.179 Sum_probs=62.9
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....||+.|+|||++...... ...++.++|||||||++|+|++|+ ||.........
T Consensus 174 ~~~~~~~~~y~aPE~~~~~~~~----------~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~------------ 231 (302)
T 2j7t_A 174 RDSFIGTPYWMAPEVVMCETMK----------DTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVL------------ 231 (302)
T ss_dssp -----CCGGGCCHHHHHHHHTT----------STTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHH------------
T ss_pred cccccCChhhcCCeeeccccCC----------CCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHH------------
Confidence 3456899999999998432211 245678999999999999999999 99654322110
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
........ ............+.+++.+||+.+|.+||++.++.+
T Consensus 232 -----~~~~~~~~-~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 232 -----LKIAKSDP-PTLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp -----HHHHHSCC-CCCSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred -----HHHhccCC-cccCCccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 00000000 000001112345889999999999999999877544
|
| >3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-13 Score=132.49 Aligned_cols=116 Identities=20% Similarity=0.207 Sum_probs=53.9
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|++ |+++.+..... .....||+.|+|||++.... ....++.++|||||||+||+|++|+ ||.
T Consensus 165 ~kl~Dfg~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~-----------~~~~~~~~~Di~slG~il~~l~~g~~pf~ 230 (327)
T 3aln_A 165 IKLCDFGISGQLVDSIA---KTRDAGCRPYMAPERIDPSA-----------SRQGYDVRSDVWSLGITLYELATGRFPYP 230 (327)
T ss_dssp EEECCCSSSCC--------------------------------------------CCSHHHHHHHHHHHHHHHHSCCCSS
T ss_pred EEEccCCCceecccccc---cccCCCCccccCceeecccc-----------CcCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence 5555 55655544322 34558999999999982211 1244678999999999999999999 996
Q ss_pred HHHh--hhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELI--DYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.... ..+..+... .+ +..+..........+.+++.+||+.+|.+||++.++.+
T Consensus 231 ~~~~~~~~~~~~~~~-~~----------------~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 231 KWNSVFDQLTQVVKG-DP----------------PQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp CC-------CCCCCS-CC----------------CCCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CcchHHHHHHHHhcC-CC----------------CCCCCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 5221 111100000 00 00000111123445889999999999999999887654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-08 Score=96.48 Aligned_cols=241 Identities=13% Similarity=0.069 Sum_probs=150.1
Q ss_pred ecCccceEEEEEc--CCEEEE-------EeCCCcEEEEeCCCCeEEEEEe----CCCCCeEEEEEecCCCCEEEEEcCCC
Q 008820 249 QGHRDCVTGLAVG--GGFLFS-------SSFDKSIHVWSLKDFSHVHTFK----GHDHKVMAVVYVDEDQPLCISGDSGG 315 (552)
Q Consensus 249 ~~H~~~V~~l~~s--~~~l~s-------~s~dg~I~iwd~~~~~~~~~~~----~h~~~v~~v~~~~~~~~~l~s~~~dg 315 (552)
.+.-....+++|+ +..+++ +..++.|.+||..+++...... ++...+.++++.++++.++++.. ++
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RL 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CC
Confidence 3344566788997 666666 5778899999988877643322 24567899999887344544444 44
Q ss_pred cEEEEeCCCCCCCcc-ccccccCCCceeeeEEEEeeCCCEEEEeeCC---------------CcEEEEECCCCceeEEec
Q 008820 316 GIFVWSFSFPLGHEP-LKKWNEEKDWRYSGIHALTTSGRYLYTGSGD---------------RTIKAWSLLDGTLSCTMS 379 (552)
Q Consensus 316 ~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d---------------g~i~iwd~~~~~~~~~~~ 379 (552)
.|.+||.+ ++.... ...... .........++.++++..++...+ +.|..||.. ++......
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~-~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~ 169 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEG-RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT 169 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTS-CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred CEEEEeCC-CCEEEEEeccCCC-ccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence 78899987 432211 111111 111112234667788777666554 567777765 55443322
Q ss_pred CCCCCeEEEEEe----CC--EEEEE-eCCCcEEEEECC-CCcee--EEEec-CCCC-ceEEEEEEcCCCCEEEEEECCCc
Q 008820 380 GHKSAVSTLAVC----NG--VLYSG-SRDGTIRLWSLS-DHSLL--TVLEE-DSSG-AVSSVLSLTAVQHTLVVSHESGS 447 (552)
Q Consensus 380 ~h~~~v~~l~~~----~~--~l~s~-~~dg~i~iwd~~-~~~~~--~~~~~-~~~~-~~~~~~~~s~~~~~l~~g~~dg~ 447 (552)
+......++++ ++ .++.+ ..++.|.+||+. +++.. ..+.. .... .....++++++|+++++...++.
T Consensus 170 -~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 170 -AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp -EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred -CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 33446788887 44 45544 567899999986 44421 11111 1111 22333689999998888878899
Q ss_pred EEEEeCC--cceeeeecccceEEEEEe--cCCEEEE-EeCCCeEEEEecCCC
Q 008820 448 IKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFT-GGWDKTVSVQELAGD 494 (552)
Q Consensus 448 i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~s-gs~dg~i~iwd~~~~ 494 (552)
|.+||.. +....+..+...+.++.+ +++.|+. ...++.|..|++...
T Consensus 249 i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 249 IEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 9999965 455666666677888876 7885554 455689999998753
|
| >2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.5e-12 Score=123.33 Aligned_cols=104 Identities=17% Similarity=0.292 Sum_probs=62.3
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....||+.|+|||++.. ...+++++|||||||+||||++|+ ||.............+..+.
T Consensus 183 ~~~~~~~~~y~aPE~~~~--------------~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~--- 245 (303)
T 2vwi_A 183 RKTFVGTPCWMAPEVMEQ--------------VRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPP--- 245 (303)
T ss_dssp -----CCCTTCCHHHHHH--------------HHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCC---
T ss_pred hcccCCCccccCHHHhcc--------------ccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCC---
Confidence 356789999999999832 123568999999999999999999 99653322110000000000
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
....... ..........++.+++.+||+.+|.+||++.++.+
T Consensus 246 ------~~~~~~~--~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 246 ------SLETGVQ--DKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLR 287 (303)
T ss_dssp ------CTTC-------CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred ------ccccccc--cchhhhhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 0000000 00111223445899999999999999999887665
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=9.8e-09 Score=109.16 Aligned_cols=269 Identities=11% Similarity=0.062 Sum_probs=171.6
Q ss_pred ceEEEeeCCCeEEEEEeecCcc-----------ceEEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCC-C----CCe
Q 008820 232 KDLVNGLSKGNVKFKDLQGHRD-----------CVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGH-D----HKV 295 (552)
Q Consensus 232 ~~~~~~~~~~~~~~~~l~~H~~-----------~V~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h-~----~~v 295 (552)
..+..........+|++..... .-..+++.+..++.++.|+.|..+|..+|+.+..+..+ . ..+
T Consensus 87 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~ 166 (677)
T 1kb0_A 87 SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTI 166 (677)
T ss_dssp GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBC
T ss_pred CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCccc
Confidence 3344444455566888765432 11345566889999999999999999999999998765 2 112
Q ss_pred EEEEEecCCCCEEEEEcC------CCcEEEEeCCCCCCCccccccccCC---------------------------Ccee
Q 008820 296 MAVVYVDEDQPLCISGDS------GGGIFVWSFSFPLGHEPLKKWNEEK---------------------------DWRY 342 (552)
Q Consensus 296 ~~v~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~---------------------------~~~~ 342 (552)
.+--... ++ .++.++. ++.|+.+|..+++............ ....
T Consensus 167 ~~~p~v~-~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~ 244 (677)
T 1kb0_A 167 TGAPRVF-KG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTM 244 (677)
T ss_dssp CSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCC
T ss_pred ccCcEEE-CC-EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCccc
Confidence 1111111 33 3344443 7999999999887554333211110 0000
Q ss_pred eeEEEEeeCCCEEEEeeCCC-------------------cEEEEECCCCceeEEecC--CC-------CCeEEEEEe--C
Q 008820 343 SGIHALTTSGRYLYTGSGDR-------------------TIKAWSLLDGTLSCTMSG--HK-------SAVSTLAVC--N 392 (552)
Q Consensus 343 ~~~~~~~~~~~~l~sgs~dg-------------------~i~iwd~~~~~~~~~~~~--h~-------~~v~~l~~~--~ 392 (552)
-...++.++++.++.++.++ .|..+|.++|+.+..+.. |. .....+... +
T Consensus 245 w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG 324 (677)
T 1kb0_A 245 WDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG 324 (677)
T ss_dssp CSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred ccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence 01246677788888877664 599999999999988753 21 111122222 2
Q ss_pred ---CEEEEEeCCCcEEEEECCCCceeEEEecCCCCce---------------------------------EEEEEEcCCC
Q 008820 393 ---GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAV---------------------------------SSVLSLTAVQ 436 (552)
Q Consensus 393 ---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~s~~~ 436 (552)
+.++.++.+|.++++|..+|+.+..+........ ...++++|++
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~ 404 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT 404 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence 4788999999999999999999887764321100 0124788888
Q ss_pred CEEEEEECC-------------------------------------------CcEEEEeCCc--ceeeeecccceEE--E
Q 008820 437 HTLVVSHES-------------------------------------------GSIKVWRNDK--FMKSMQTHKGSVF--A 469 (552)
Q Consensus 437 ~~l~~g~~d-------------------------------------------g~i~iwd~~~--~~~~~~~h~~~v~--~ 469 (552)
.++++...+ |.|..||..+ .+..+... .++. .
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~ 483 (677)
T 1kb0_A 405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGT 483 (677)
T ss_dssp TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCE
T ss_pred CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcc
Confidence 888876532 6789999654 33333322 2222 2
Q ss_pred EEecCCEEEEEeCCCeEEEEecCCCeeeeeeccC
Q 008820 470 VFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPT 503 (552)
Q Consensus 470 v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~ 503 (552)
+..++..++.++.||.+++||..+++....+...
T Consensus 484 ~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 517 (677)
T 1kb0_A 484 LTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG 517 (677)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred eEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence 4457888999999999999999999888776654
|
| >1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.6e-12 Score=122.18 Aligned_cols=104 Identities=18% Similarity=0.139 Sum_probs=68.0
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|++ |+++.+... ....||+.|+|||++ .+ ....++++|||||||+||+|++|. |+
T Consensus 172 ~~kl~Dfg~~~~~~~~------~~~~gt~~y~aPE~~------~~--------~~~~~~~~Di~slG~il~~l~~~~~~~ 231 (289)
T 1x8b_A 172 MFKIGDLGHVTRISSP------QVEEGDSRFLANEVL------QE--------NYTHLPKADIFALALTVVCAAGAEPLP 231 (289)
T ss_dssp CEEECCCTTCEETTCS------CCCCCCGGGCCHHHH------TT--------CCTTHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred EEEEcccccccccCCc------cccCCCccccChhHh------cC--------CCCCCchhhHHHHHHHHHHHhcCCCCC
Confidence 45666 445544433 234599999999999 22 234567999999999999999999 55
Q ss_pred hHHH-hhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKEL-IDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.... ...+. ... ...........+.+++.+||+.+|.+||++.++.+
T Consensus 232 ~~~~~~~~~~--~~~----------------------~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 279 (289)
T 1x8b_A 232 RNGDQWHEIR--QGR----------------------LPRIPQVLSQEFTELLKVMIHPDPERRPSAMALVK 279 (289)
T ss_dssp SSSHHHHHHH--TTC----------------------CCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred cchhHHHHHH--cCC----------------------CCCCCcccCHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence 3322 11110 000 00011123445899999999999999999887654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.1e-09 Score=112.63 Aligned_cols=234 Identities=12% Similarity=-0.037 Sum_probs=144.4
Q ss_pred CCCCeEEEEEecCCCCEEEEEcCCC----cEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCc---
Q 008820 291 HDHKVMAVVYVDEDQPLCISGDSGG----GIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT--- 363 (552)
Q Consensus 291 h~~~v~~v~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~--- 363 (552)
|...+..++|+|++..++++.+.+| .|++||+.+++..... ... ......+++++ +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~--~~~----~~~~~~~wspD-~~l~~~~~~~~~~~ 233 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE--LKW----VKFSGLAWLGN-DALLYSRFAEPKEG 233 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE--EEE----EESCCCEESTT-SEEEEEECCCC---
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc--CCC----ceeccEEEECC-CEEEEEEecCcccc
Confidence 3346789999998887666655544 4999999877542210 000 11123478899 88888776654
Q ss_pred -----------EEEEECCCCce--eEEec--CCCCCeEEEEEe-CC-EEEEEeCC-----CcEEEEECCCC--ceeEEEe
Q 008820 364 -----------IKAWSLLDGTL--SCTMS--GHKSAVSTLAVC-NG-VLYSGSRD-----GTIRLWSLSDH--SLLTVLE 419 (552)
Q Consensus 364 -----------i~iwd~~~~~~--~~~~~--~h~~~v~~l~~~-~~-~l~s~~~d-----g~i~iwd~~~~--~~~~~~~ 419 (552)
|++|++.+++. ...+. .+...+.++.|+ ++ +|+..+.+ ..|++||+.++ +....+.
T Consensus 234 ~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~ 313 (741)
T 1yr2_A 234 QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI 313 (741)
T ss_dssp -----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE
T ss_pred cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec
Confidence 89999987752 22333 333458889999 44 66666644 38999999877 3144554
Q ss_pred cCCCCceEEEEEEcCCCCEEEEEECC----CcEEEEeCCcc----eeeeecccceEEEEEe-cCCEEEEEeCCCeEEEEe
Q 008820 420 EDSSGAVSSVLSLTAVQHTLVVSHES----GSIKVWRNDKF----MKSMQTHKGSVFAVFL-EGKWLFTGGWDKTVSVQE 490 (552)
Q Consensus 420 ~~~~~~~~~~~~~s~~~~~l~~g~~d----g~i~iwd~~~~----~~~~~~h~~~v~~v~~-~~~~l~sgs~dg~i~iwd 490 (552)
.+.... .. .++++++.|+..+.+ +.|.+||.... ...+..+...+..+++ ++..+++...|+..++|.
T Consensus 314 ~~~~~~-~~--~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~ 390 (741)
T 1yr2_A 314 PDLKAQ-WD--FVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLA 390 (741)
T ss_dssp CSSSSC-EE--EEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEE
T ss_pred CCCCce-EE--EEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEE
Confidence 443333 32 234888888887764 45999997542 2333445556667777 566778888899877775
Q ss_pred cC-CCeeeeeeccCCCcccCcceEEEEEeCC--eEE-EEe---CCCeEEEEEecC
Q 008820 491 LA-GDEFEEDVIPTGAIPCGSVITALLYWQG--KLF-VGC---ADRTVKIALCNR 538 (552)
Q Consensus 491 ~~-~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~-s~s---~Dg~v~iw~~~~ 538 (552)
+. ++.....+.. +....+..++++++ .++ +.+ ..++|++||+..
T Consensus 391 ~~~~g~~~~~l~~----~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 391 FDLDGKPAGAVSL----PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp EETTSCEEEECBC----SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred EeCCCCceeeccC----CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 54 2332222221 12455778888742 344 322 347899998763
|
| >2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.3e-12 Score=126.21 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=70.7
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccc-cccccchhhhhhhhhhCC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGY-GSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~-~sDv~SlG~~l~~lltg~-pf 89 (552)
.|++ |+++.+... ......||+.|+|||++ .+ ...++. ++|||||||++|||++|+ ||
T Consensus 191 ~kl~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~------~~--------~~~~~~~~~Di~slG~il~~l~~g~~pf 252 (348)
T 2pml_X 191 VKLSDFGESEYMVDK----KIKGSRGTYEFMPPEFF------SN--------ESSYNGAKVDIWSLGICLYVMFYNVVPF 252 (348)
T ss_dssp EEECCCTTCEECBTT----EECSSCSCGGGCCGGGG------SS--------CCCEEHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred EEEeccccccccccc----cccCCCCCcCccCchhh------cC--------CCCCCcchhhHHHHHHHHHHHHhCCCCC
Confidence 4555 444444333 25667899999999998 32 113444 999999999999999999 99
Q ss_pred hHHHh-hhh-hhcccc--CCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELI-DYI-RCVSTK--ASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~-~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..... ..+ ..+... ..|.....+ ........ ..........++.+++.+||+.+|.+||++.++.+
T Consensus 253 ~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~ 322 (348)
T 2pml_X 253 SLKISLVELFNNIRTKNIEYPLDRNHF--LYPLTNKK---STCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK 322 (348)
T ss_dssp CCSSCSHHHHHHHTSCCCCCCCSSSSS--TTTTCC-----------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred CCCCcHHHHHHHHhccCcCCccchhhh--hccccccc---cccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 65332 111 100000 011000000 00000000 00011223445899999999999999999887665
|
| >1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A | Back alignment and structure |
|---|
Probab=99.14 E-value=5.9e-12 Score=120.61 Aligned_cols=96 Identities=11% Similarity=0.179 Sum_probs=56.4
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhh
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIA 110 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~ 110 (552)
.....||+.|+|||++ .+ ...++.++|||||||+||||+++. +... ....+.
T Consensus 187 ~~~~~~~~~y~aPE~~------~~--------~~~~~~~~Di~slG~il~~l~~p~~~~~~-~~~~~~------------ 239 (303)
T 1zy4_A 187 LTSAIGTAMYVATEVL------DG--------TGHYNEKIDMYSLGIIFFEMIYPFSTGME-RVNILK------------ 239 (303)
T ss_dssp -------CTTSCHHHH------TS--------CSCCCTHHHHHHHHHHHHHHHSCCSSHHH-HHHHHH------------
T ss_pred cccCCCcccccCcccc------cC--------CCCCcchhhHHHHHHHHHHHHhccCCchh-HHHHHH------------
Confidence 4567899999999998 22 235678999999999999999944 3211 111000
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 111 CLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+.......+..........+.+++.+||+.+|.+||++.++.+
T Consensus 240 ------~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 283 (303)
T 1zy4_A 240 ------KLRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLN 283 (303)
T ss_dssp ------HHHSTTCCCCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred ------hccccccccCccccccchHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence 00000000011111122334889999999999999999888765
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-08 Score=94.49 Aligned_cols=230 Identities=8% Similarity=-0.045 Sum_probs=142.5
Q ss_pred CeEEEEEecCCCCEEE-EEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCC
Q 008820 294 KVMAVVYVDEDQPLCI-SGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDG 372 (552)
Q Consensus 294 ~v~~v~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~ 372 (552)
...++++.+++. +++ +...++.|.+||..+...... . ... . ......++.++++.+++.. ++.|..||....
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-~-~~~--~-~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~ 97 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-P-FNG--L-YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN 97 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-C-CCS--C-CSCCCEEECTTCCEEEEET-TTEEEEECTTCS
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-e-eCC--c-CCcceeEECCCCCEEEEcC-CCEEEEEeCCCc
Confidence 678899988765 656 557789999998764322111 0 000 0 1112246677788555554 889999998665
Q ss_pred ceeEEec-CCCCCeEEEEEe-CC-EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEE
Q 008820 373 TLSCTMS-GHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIK 449 (552)
Q Consensus 373 ~~~~~~~-~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 449 (552)
.. ..+. .....+.+++++ ++ ++++...++.|.+||..+.......... ...... ++++++++++++...++.|.
T Consensus 98 ~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~~-i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 98 NQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG-LNDPDG-VAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp CC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCS-CCSCCC-EEECTTCCEEEEEGGGTEEE
T ss_pred eE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecccc-CCCcee-EEEeCCCCEEEEECCCCEEE
Confidence 43 3332 233568899998 44 5555566889999986655433221111 112233 68899999777777788999
Q ss_pred EEeCCcceee--eecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-Ce-EE
Q 008820 450 VWRNDKFMKS--MQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-GK-LF 523 (552)
Q Consensus 450 iwd~~~~~~~--~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~-l~ 523 (552)
+||....... ...+...+.++.+ +|..+++...++.|.+||..+...... .. . ....+.++++++ +. ++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~-~~-~---~~~~p~~i~~~~~g~l~v 249 (270)
T 1rwi_B 175 KLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL-PF-T---GLNTPLAVAVDSDRTVYV 249 (270)
T ss_dssp EECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEEC-CC-C---SCSCEEEEEECTTCCEEE
T ss_pred EEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceee-cc-C---CCCCceeEEECCCCCEEE
Confidence 9996543221 1223355666766 666666666788999999976543321 11 1 124578899984 44 55
Q ss_pred EEeCCCeEEEEEecC
Q 008820 524 VGCADRTVKIALCNR 538 (552)
Q Consensus 524 s~s~Dg~v~iw~~~~ 538 (552)
+...++.|++++...
T Consensus 250 ~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 250 ADRGNDRVVKLTSLE 264 (270)
T ss_dssp EEGGGTEEEEECCCG
T ss_pred EECCCCEEEEEcCCC
Confidence 667799999999874
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-09 Score=106.17 Aligned_cols=275 Identities=12% Similarity=0.037 Sum_probs=170.3
Q ss_pred EEEEEeecCccceEEEEEc-CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEe
Q 008820 243 VKFKDLQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (552)
Q Consensus 243 ~~~~~l~~H~~~V~~l~~s-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 321 (552)
..+|++..+.....+..+. +..++.++.++.|..|| .+++....+..+...+.++...+++ .+..++.+ +..+|
T Consensus 10 ~~~W~~~~~~~~~~~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~--l~~~d 84 (330)
T 3hxj_A 10 KIKWEFLIGNSIDSSPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDG--TIYFGSDK--VYAIN 84 (330)
T ss_dssp --CCTTTSCEEECCCCEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTT--EECCSSCE--EEEEC
T ss_pred eEEEEEeCCCCcccCceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCC--cEEEecCc--EEEEC
Confidence 3455555555444556664 77788888899999999 8888876655444455666654433 34555555 88887
Q ss_pred CCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CCEEEEEeC
Q 008820 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NGVLYSGSR 400 (552)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~ 400 (552)
. ++....... .... . .....+. +..++.++.++.|..+|.. ++.......+...+.++... ++.++.++.
T Consensus 85 ~-~g~~~~~~~---~~~~-~-~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~ 155 (330)
T 3hxj_A 85 P-DGTEKWRFD---TKKA-I-VSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSN 155 (330)
T ss_dssp C-CGGGGGGSC---C-------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECT
T ss_pred C-CCcEEEEEE---CCCC-c-ccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcC
Confidence 5 332222111 1111 0 1111222 5678888889999999988 88877776666666777777 678888999
Q ss_pred CCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC-cceeeeecccceEEEEEecC-CEEE
Q 008820 401 DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND-KFMKSMQTHKGSVFAVFLEG-KWLF 478 (552)
Q Consensus 401 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~h~~~v~~v~~~~-~~l~ 478 (552)
++.|..+|.. ++....+..... .... +...+++.+. .++ +.|..+|.. +...........+.++..+. ..|.
T Consensus 156 ~~~l~~~d~~-g~~~~~~~~~~~-~~~~-~~~d~~g~l~-v~t--~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~ 229 (330)
T 3hxj_A 156 DNYLYAINPD-GTEKWRFKTNDA-ITSA-ASIGKDGTIY-FGS--DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIY 229 (330)
T ss_dssp TSEEEEECTT-SCEEEEEECSSC-CCSC-CEECTTCCEE-EES--SSEEEECTTSCEEEEECCSSCCCSCCEECTTSCEE
T ss_pred CCEEEEECCC-CCEeEEEecCCC-ceee-eEEcCCCEEE-EEe--CEEEEECCCCcEEEEEccCCcceeceEECCCCeEE
Confidence 9999999998 887777765422 2222 4566677644 444 789999932 23333343444555665543 3677
Q ss_pred EEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEe-CCeEEEEeCCCeEEEEEecCCcceeEE
Q 008820 479 TGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QGKLFVGCADRTVKIALCNRQIPEIFS 545 (552)
Q Consensus 479 sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~Dg~v~iw~~~~~~~~~~~ 545 (552)
.++.++.|..+|..+. ........ ...+.++... ++.|+.++.+|.|..++. ++..+..
T Consensus 230 v~t~~~gl~~~~~~g~-~~~~~~~~-----~~~~~~~~~~~~g~l~v~t~~ggl~~~d~--~g~~~~~ 289 (330)
T 3hxj_A 230 VTSLDGHLYAINPDGT-EKWRFKTG-----KRIESSPVIGNTDTIYFGSYDGHLYAINP--DGTEKWN 289 (330)
T ss_dssp EEETTTEEEEECTTSC-EEEEEECS-----SCCCSCCEECTTSCEEEECTTCEEEEECT--TSCEEEE
T ss_pred EEcCCCeEEEECCCCC-EeEEeeCC-----CCccccceEcCCCeEEEecCCCCEEEECC--CCcEEEE
Confidence 7888889999986444 33333222 1112334445 677999999999999884 3444443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-07 Score=94.65 Aligned_cols=233 Identities=12% Similarity=0.135 Sum_probs=143.4
Q ss_pred cceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCC--cEEEEeCCCCCCC
Q 008820 253 DCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGG--GIFVWSFSFPLGH 328 (552)
Q Consensus 253 ~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~ 328 (552)
.....++++ ++++++...++.|++||.+++........... .. ++|+++++ .++++..++ .|.+|+.......
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~-~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQ-RVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSS-EEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCC-cEEEEecCCCceEEEEEcCCCcee
Confidence 467889998 66666666779999999988877666555333 33 89999776 455565554 7888887654332
Q ss_pred ccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEE----ecCCCCCe--EEEEEeC--C-EEEEEe
Q 008820 329 EPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT----MSGHKSAV--STLAVCN--G-VLYSGS 399 (552)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~----~~~h~~~v--~~l~~~~--~-~l~s~~ 399 (552)
..+........... .-.++++++..|+.+..++.|+.||..++..... ..++...- ..++|++ + ++++-.
T Consensus 208 ~~~g~~~~~~~~~p-~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKI-GAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCC-CBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCc-EEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 12200001011111 1246777555555577788999999987764332 22222222 3899993 4 445555
Q ss_pred CCCcEEEEECCCCceeEEEecCC--C-----------CceEEEEEEcCCCCEEEEEE-CCCcEEEEe-CCcceeeeecc-
Q 008820 400 RDGTIRLWSLSDHSLLTVLEEDS--S-----------GAVSSVLSLTAVQHTLVVSH-ESGSIKVWR-NDKFMKSMQTH- 463 (552)
Q Consensus 400 ~dg~i~iwd~~~~~~~~~~~~~~--~-----------~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd-~~~~~~~~~~h- 463 (552)
.++.|+.||.... +..+.... . -....-++++++|+++++-. .++.|+.|| ....+..+.++
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~ 364 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQV 364 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECT
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCC
Confidence 6789999997643 22332221 0 01133379999999777777 789999999 44444445444
Q ss_pred --------------cceEEEEEe--cCCEEEEEeCCCeEEEEec
Q 008820 464 --------------KGSVFAVFL--EGKWLFTGGWDKTVSVQEL 491 (552)
Q Consensus 464 --------------~~~v~~v~~--~~~~l~sgs~dg~i~iwd~ 491 (552)
-.....+++ ++.++++-..++.|+.+++
T Consensus 365 ~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 365 DVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 133555655 5666666667778877765
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.3e-07 Score=89.14 Aligned_cols=242 Identities=9% Similarity=0.023 Sum_probs=152.2
Q ss_pred EEEeecCccceEEEEEc--CCEEEEEe----------CCCcEEEEeCCCCeEEEEEeCC-------CCCeEEEEEecCCC
Q 008820 245 FKDLQGHRDCVTGLAVG--GGFLFSSS----------FDKSIHVWSLKDFSHVHTFKGH-------DHKVMAVVYVDEDQ 305 (552)
Q Consensus 245 ~~~l~~H~~~V~~l~~s--~~~l~s~s----------~dg~I~iwd~~~~~~~~~~~~h-------~~~v~~v~~~~~~~ 305 (552)
+..+.....+ .++++ +++++.+. .++.|.+||..+.+.+.++... ......++|+|++.
T Consensus 60 ~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~ 137 (373)
T 2mad_H 60 LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA 137 (373)
T ss_pred EEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC
Confidence 3444443344 88888 88888875 3678999999998888877532 12345889999888
Q ss_pred CEEEEEcC-CCcEEEEeCCCCCCCcc-ccccccCCCceeeeEEEEeeCC-CEEEEeeCCCcEEEEECCCCceeEEec---
Q 008820 306 PLCISGDS-GGGIFVWSFSFPLGHEP-LKKWNEEKDWRYSGIHALTTSG-RYLYTGSGDRTIKAWSLLDGTLSCTMS--- 379 (552)
Q Consensus 306 ~~l~s~~~-dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~--- 379 (552)
.++++... ++.|.++| .+.+.... +.. .. ...+.+++ +.+++.+.||.+.++|. +++......
T Consensus 138 ~l~v~n~~~~~~v~viD-~t~~~~~~~i~~---~~------~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~ 206 (373)
T 2mad_H 138 DLLFFQFAAGPAVGLVV-QGGSSDDQLLSS---PT------CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGA 206 (373)
T ss_pred EEEEEecCCCCeEEEEE-CCCCEEeEEcCC---Cc------eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccc
Confidence 66665544 68899999 87644322 211 11 12334444 46677788999999999 887764322
Q ss_pred --CCCCCe-EEEEEe--CCEEEEEeCCCcEEEEECCCCc--eeEEEecCC---------CCceEEEEEEcCCCCEEEEEE
Q 008820 380 --GHKSAV-STLAVC--NGVLYSGSRDGTIRLWSLSDHS--LLTVLEEDS---------SGAVSSVLSLTAVQHTLVVSH 443 (552)
Q Consensus 380 --~h~~~v-~~l~~~--~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~---------~~~~~~~~~~s~~~~~l~~g~ 443 (552)
....++ ....+. ++.++..+.++.+.+.|+.++. .+..+.... ... ...+.++++++.++++.
T Consensus 207 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g-~~~~~~s~d~~~lyV~~ 285 (373)
T 2mad_H 207 MLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGG-WQQVAYLKSSDGIYLLT 285 (373)
T ss_pred cccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCc-eEeEEECCCCCEEEEEe
Confidence 112222 223334 3444444478899999997653 222222110 111 12257899999888865
Q ss_pred C----------CCcEEEEeCCc--ceeeeec-ccceEEEEEecCC-EEEEEe-CCCeEEEEecCCCeeeeee
Q 008820 444 E----------SGSIKVWRNDK--FMKSMQT-HKGSVFAVFLEGK-WLFTGG-WDKTVSVQELAGDEFEEDV 500 (552)
Q Consensus 444 ~----------dg~i~iwd~~~--~~~~~~~-h~~~v~~v~~~~~-~l~sgs-~dg~i~iwd~~~~~~~~~~ 500 (552)
. ++.|.++|..+ .+..+.. +...-..+++||+ .++++. .++.|.+||+.+.+.....
T Consensus 286 ~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 286 SEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 4 35799999653 4455543 2223334455898 788777 4899999999998776653
|
| >3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=8.5e-12 Score=129.91 Aligned_cols=135 Identities=15% Similarity=0.193 Sum_probs=73.3
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
+.|+. |+++.+..... .....||+.|+|||++ . ...+++++|||||||+||+|++|+ ||
T Consensus 162 ~vKL~DFG~a~~~~~~~~---~~~~~gt~~Y~APE~l------~---------~~~~s~ksDIwSLGviLyeLltG~~Pf 223 (676)
T 3qa8_A 162 IHKIIDLGYAKELDQGEL---CTEFVGTLQYLAPELL------E---------QKKYTVTVDYWSFGTLAFECITGFRPF 223 (676)
T ss_dssp EEEECSCCCCCBTTSCCC---CCCCCSCCTTCSSCSS------C---------CSCCSTTHHHHHHHHHHHHHHSSCSSC
T ss_pred eEEEcccccccccccccc---cccccCCcccCChHHh------c---------cCCCCchhHHHHHHHHHHHHHHCCCCC
Confidence 35566 55655544432 5678999999999998 3 356788999999999999999999 99
Q ss_pred hHHHhh-hhhh-ccccCCCchhhhhhh---hHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhh-----HH
Q 008820 90 TKELID-YIRC-VSTKASDDNIACLGM---YMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTN-----VW 159 (552)
Q Consensus 90 ~~~~~~-~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~-----~~ 159 (552)
.+...+ .+.. +... ....+..... ...+.. ....+..........+.+++.+||..+|.+||++.+ ..
T Consensus 224 ~~~~~~~~~~~~i~~~-~~~~~~~~~~l~g~~~~~~-~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F 301 (676)
T 3qa8_A 224 LPNWQPVQWHGKVREK-SNEHIVVYDDLTGAVKFSS-VLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCF 301 (676)
T ss_dssp CSSCHHHHSSTTCC-------CCSCCCCSSSCCCCS-SSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTH
T ss_pred Ccccchhhhhhhhhcc-cchhhhhhhhhcccccccc-ccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHH
Confidence 543111 0000 0000 0000000000 000000 000000001112234889999999999999999875 44
Q ss_pred HHHHhhhc
Q 008820 160 KCIRELII 167 (552)
Q Consensus 160 ~~l~~~~~ 167 (552)
+.+..++.
T Consensus 302 ~~l~~iL~ 309 (676)
T 3qa8_A 302 QALDSILS 309 (676)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 55555543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-07 Score=94.83 Aligned_cols=236 Identities=9% Similarity=0.037 Sum_probs=150.4
Q ss_pred CCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCC--cEEEEECC
Q 008820 293 HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR--TIKAWSLL 370 (552)
Q Consensus 293 ~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg--~i~iwd~~ 370 (552)
.....++|.+++. ++++...++.|+.||..++........ . .... .+++++++.++++..++ .|..+|..
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~~~~---~---~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~ 202 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTVHPG---F---KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA 202 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEEEET---C---CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEeecc---C---CCCc-eeEecCCCcEEEEecCCCceEEEEEcC
Confidence 3578999988665 777777889999999876433222111 1 1112 57889999888888766 79999987
Q ss_pred CCceeEEe----cCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEE---ecCCCCce-EEEEEEcCC-CCEE
Q 008820 371 DGTLSCTM----SGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVL---EEDSSGAV-SSVLSLTAV-QHTL 439 (552)
Q Consensus 371 ~~~~~~~~----~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~-~~~~~~s~~-~~~l 439 (552)
.+.....+ ......+.+++++ ++.|+.+..++.|+.||..++.....- ........ ..-++++|+ +.++
T Consensus 203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly 282 (409)
T 3hrp_A 203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY 282 (409)
T ss_dssp GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence 66554444 2245667889998 357777888899999999877643220 11111111 113789995 5555
Q ss_pred EEEECCCcEEEEeCCcceeeeeccc---------------ceEEEEEe--cCCEEEEEe-CCCeEEEEecCCCeeeeeec
Q 008820 440 VVSHESGSIKVWRNDKFMKSMQTHK---------------GSVFAVFL--EGKWLFTGG-WDKTVSVQELAGDEFEEDVI 501 (552)
Q Consensus 440 ~~g~~dg~i~iwd~~~~~~~~~~h~---------------~~v~~v~~--~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~ 501 (552)
++-..++.|+.|+.......+.++. .....+++ +|+++++-+ .++.|+.||+.++.......
T Consensus 283 v~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 283 MSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp EEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred EEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence 5556688999999665444444432 23455655 788777777 78999999987776543322
Q ss_pred cCCCc---------ccCcceEEEEEeC-CeEEE-EeCCCeEEEEEe
Q 008820 502 PTGAI---------PCGSVITALLYWQ-GKLFV-GCADRTVKIALC 536 (552)
Q Consensus 502 ~~~~~---------~~~~~v~~l~~~~-~~l~s-~s~Dg~v~iw~~ 536 (552)
..... ..-.....+++++ +.|++ -..++.|+.+++
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 21000 0013477888885 55554 445677877765
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-11 Score=131.61 Aligned_cols=104 Identities=16% Similarity=0.113 Sum_probs=69.8
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+++.+... +...||+.|||||++. +..+.++|||||||+||+|++|. ||
T Consensus 219 ~~kl~DFG~a~~~~~~------~~~~gt~~y~aPE~~~----------------~~~~~~sDi~slG~~l~~l~~g~~~~ 276 (681)
T 2pzi_A 219 QLKLIDLGAVSRINSF------GYLYGTPGFQAPEIVR----------------TGPTVATDIYTVGRTLAALTLDLPTR 276 (681)
T ss_dssp CEEECCCTTCEETTCC------SCCCCCTTTSCTTHHH----------------HCSCHHHHHHHHHHHHHHHHSCCCEE
T ss_pred cEEEEecccchhcccC------CccCCCccccCHHHHc----------------CCCCCceehhhhHHHHHHHHhCCCCC
Confidence 34666 556555433 5678999999999982 22368999999999999999999 98
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcch-hhHHHHHHhh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL-TNVWKCIREL 165 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~-~~~~~~l~~~ 165 (552)
.......+ + ... . ....+ ..+.+++.+||+.+|.+||+. .++.+.+..+
T Consensus 277 ~~~~~~~~--------~------~~~-~----~~~~~--------~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~ 326 (681)
T 2pzi_A 277 NGRYVDGL--------P------EDD-P----VLKTY--------DSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGV 326 (681)
T ss_dssp TTEECSSC--------C------TTC-H----HHHHC--------HHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred cccccccc--------c------ccc-c----ccccC--------HHHHHHHhhhccCChhhCCCHHHHHHHHHHHH
Confidence 76332210 0 000 0 00111 238899999999999999974 4555554443
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-07 Score=92.32 Aligned_cols=251 Identities=14% Similarity=0.081 Sum_probs=158.5
Q ss_pred CeEEEEEeecCccceEEEEEc--CCEEEEEe----------CCCcEEEEeCCCCeEEEEEeCCC-------CCeEEEEEe
Q 008820 241 GNVKFKDLQGHRDCVTGLAVG--GGFLFSSS----------FDKSIHVWSLKDFSHVHTFKGHD-------HKVMAVVYV 301 (552)
Q Consensus 241 ~~~~~~~l~~H~~~V~~l~~s--~~~l~s~s----------~dg~I~iwd~~~~~~~~~~~~h~-------~~v~~v~~~ 301 (552)
....+.++..-..+ . ++++ +++++.++ .++.|.+||..+.+.+.++.... .....++|+
T Consensus 68 t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~s 145 (386)
T 3sjl_D 68 AGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT 145 (386)
T ss_dssp TTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC
T ss_pred CCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEc
Confidence 33344555544445 4 8888 88777765 36789999999999998885321 245678999
Q ss_pred cCCCCEEEEEc-CCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCC-CceeEEec
Q 008820 302 DEDQPLCISGD-SGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLD-GTLSCTMS 379 (552)
Q Consensus 302 ~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~-~~~~~~~~ 379 (552)
|++..++++.. .++.|.++|+.+.+....+.... ....+....+.+++.+.||.+.+.++.+ ++......
T Consensus 146 pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~ 217 (386)
T 3sjl_D 146 PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT 217 (386)
T ss_dssp TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC
T ss_pred CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec
Confidence 98887666654 37899999999765444332211 0112233445777888899999999876 55533221
Q ss_pred CC----CCCeE-EEEEe--CCEEEEEeCCCcEEEEECCCCc--eeEEEecC---------CCCceEEEEEEcCCCCEEEE
Q 008820 380 GH----KSAVS-TLAVC--NGVLYSGSRDGTIRLWSLSDHS--LLTVLEED---------SSGAVSSVLSLTAVQHTLVV 441 (552)
Q Consensus 380 ~h----~~~v~-~l~~~--~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~---------~~~~~~~~~~~s~~~~~l~~ 441 (552)
.+ ..++. ...|. ++.++..+.+|+|++.|+.+.. ....+... ..+... .++++++++.+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q-~~a~~~~~~~lyV 296 (386)
T 3sjl_D 218 EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQ-QVAYHRALDRIYL 296 (386)
T ss_dssp CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSS-CEEEETTTTEEEE
T ss_pred ceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcc-eeeECCCCCeEEE
Confidence 11 12222 24564 5666667779999999997664 33333200 011111 2577899998888
Q ss_pred EEC----------CCcEEEEeCCc--ceeeeecccceEEEE--EecCC-EEEEEe-CCCeEEEEecCCCeeeeeeccC
Q 008820 442 SHE----------SGSIKVWRNDK--FMKSMQTHKGSVFAV--FLEGK-WLFTGG-WDKTVSVQELAGDEFEEDVIPT 503 (552)
Q Consensus 442 g~~----------dg~i~iwd~~~--~~~~~~~h~~~v~~v--~~~~~-~l~sgs-~dg~i~iwd~~~~~~~~~~~~~ 503 (552)
... .+.|.++|..+ .+..+..- ..+.++ ++|++ +|++.. .++.|.++|..+++........
T Consensus 297 ~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 297 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred EeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence 753 24788999653 44444322 234444 45886 666654 5899999999998877666554
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.06 E-value=3e-09 Score=102.84 Aligned_cols=269 Identities=13% Similarity=0.122 Sum_probs=166.5
Q ss_pred EEEEeecCccceEEEEEc-CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q 008820 244 KFKDLQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (552)
Q Consensus 244 ~~~~l~~H~~~V~~l~~s-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 322 (552)
.+|.+..+...+.++... +..++.++.+ |..+|. +++.+..+...........+. +..+..++.++.+..+|.
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~---~~~l~v~t~~~~l~~~d~ 124 (330)
T 3hxj_A 51 VKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF---EDILYVTSMDGHLYAINT 124 (330)
T ss_dssp EEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE---TTEEEEECTTSEEEEECT
T ss_pred EEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE---CCEEEEEecCCEEEEEcC
Confidence 356666566667778886 6677777666 888885 555444333222222233333 235677888899999997
Q ss_pred CCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CCEEEEEeCC
Q 008820 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NGVLYSGSRD 401 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~d 401 (552)
. +........ ... ... ......++ .++.++.++.|..+|.. ++....+......+.++... ++.++.++
T Consensus 125 ~-g~~~~~~~~---~~~-~~~-~~~~~~~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-- 194 (330)
T 3hxj_A 125 D-GTEKWRFKT---KKA-IYA-TPIVSEDG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-- 194 (330)
T ss_dssp T-SCEEEEEEC---SSC-CCS-CCEECTTS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--
T ss_pred C-CCEEEEEcC---CCc-eee-eeEEcCCC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--
Confidence 7 432222111 111 011 11233344 46778888999999998 88877776666667778776 66677776
Q ss_pred CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC-cceeeeecccceEEEEEec-CCEEEE
Q 008820 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND-KFMKSMQTHKGSVFAVFLE-GKWLFT 479 (552)
Q Consensus 402 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~h~~~v~~v~~~-~~~l~s 479 (552)
+.|..+| .+++......... ..+.+ +...+++. +.+++.++.+..+|.. +....+......+.++..+ +..|..
T Consensus 195 ~~l~~~d-~~g~~~~~~~~~~-~~~~~-~~~~~~g~-l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v 270 (330)
T 3hxj_A 195 DKVYAIN-PDGTEKWNFYAGY-WTVTR-PAISEDGT-IYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIYF 270 (330)
T ss_dssp SSEEEEC-TTSCEEEEECCSS-CCCSC-CEECTTSC-EEEEETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEE
T ss_pred CEEEEEC-CCCcEEEEEccCC-cceec-eEECCCCe-EEEEcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCCeEEE
Confidence 8899999 7777776665432 22333 46666665 5667778889888853 3333443333323333343 667888
Q ss_pred EeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEE-eCCeEEEEeCCCeEEEEEecC
Q 008820 480 GGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLY-WQGKLFVGCADRTVKIALCNR 538 (552)
Q Consensus 480 gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~s~s~Dg~v~iw~~~~ 538 (552)
++.+|.|..+|. +++........ ...+.++.. .++.|+.++.+|.+++...+.
T Consensus 271 ~t~~ggl~~~d~-~g~~~~~~~~~-----~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 271 GSYDGHLYAINP-DGTEKWNFETG-----SWIIATPVIDENGTIYFGTRNGKFYALFNLE 324 (330)
T ss_dssp ECTTCEEEEECT-TSCEEEEEECS-----SCCCSCCEECTTCCEEEECTTSCEEEEEC--
T ss_pred ecCCCCEEEECC-CCcEEEEEEcC-----CccccceEEcCCCEEEEEcCCCeEEEEeccc
Confidence 888999999996 45444433321 334566666 367899999999999988764
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.2e-11 Score=117.30 Aligned_cols=183 Identities=14% Similarity=0.082 Sum_probs=107.6
Q ss_pred CCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEE
Q 008820 351 SGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSS 428 (552)
Q Consensus 351 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 428 (552)
++..+++++.||.|+.||..+|+.++++.. +.+.+..+. ++ .+++++.|+.|+.||..+++.+..+..+.......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 577899999999999999999999998876 444443333 44 67777899999999999998877765431111110
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCc
Q 008820 429 VLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAI 506 (552)
Q Consensus 429 ~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~ 506 (552)
...+. ++..+++|+.|+.++.||.. +.+..+..+. ....++++..+++++.|+.|+.||..+++.........
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-- 160 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF--ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-- 160 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC--cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--
Confidence 00111 34577888889999999965 4444444433 12334578899999999999999999887665543211
Q ss_pred ccCcceEEEEEeC-----CeEEEEeCCCeEEEEEecCCcceeEEE
Q 008820 507 PCGSVITALLYWQ-----GKLFVGCADRTVKIALCNRQIPEIFSL 546 (552)
Q Consensus 507 ~~~~~v~~l~~~~-----~~l~s~s~Dg~v~iw~~~~~~~~~~~~ 546 (552)
....++.+ +.+++++.||.|+.||.. ++..+.++
T Consensus 161 -----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~-tG~~~W~~ 199 (369)
T 2hz6_A 161 -----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSE-SGDVLWIQ 199 (369)
T ss_dssp -----ECCBCCCCCTTCCCCEEEEETSCEEEEECTT-TCCEEEEE
T ss_pred -----ccCccccCCccccceEEEECCCCEEEEEECC-CCcEEEEe
Confidence 11222233 668889999999999987 45555544
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.6e-09 Score=103.26 Aligned_cols=170 Identities=12% Similarity=0.098 Sum_probs=119.0
Q ss_pred ceEEEEEc--CCEEEEEeCCCcEEEEeCCCCe-----------EEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 008820 254 CVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS-----------HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (552)
Q Consensus 254 ~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~-----------~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vw 320 (552)
.++.++++ ..++++|+.|+ +++|++++.+ ..... .+.. |+.++| ++.+|+++ .++.|++|
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 58888888 88899999884 6679865332 11223 3556 999999 34566777 88999999
Q ss_pred eCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEeC
Q 008820 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSR 400 (552)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~ 400 (552)
|+.+.........+.. .+..+.+....+++++.||.|.+||+.+++... +...|+|++|+++-++.|..
T Consensus 112 dv~sl~~~~~~~~~~~-------~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG~~vg~~ 180 (388)
T 1xip_A 112 DLEELSEFRTVTSFEK-------PVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQLAVLLK 180 (388)
T ss_dssp ESSSTTCEEEEEECSS-------CEEEEEECSSEEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSEEEEEET
T ss_pred EchhhhccCccceeec-------ceeeEEecCCCEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCceEEEEc
Confidence 9987654333322221 122334444348999999999999999887654 34579999999544888999
Q ss_pred CCcEEEEECCCCce--eEEEec--------CCCCceEEEEEEcCCCCEEEEE
Q 008820 401 DGTIRLWSLSDHSL--LTVLEE--------DSSGAVSSVLSLTAVQHTLVVS 442 (552)
Q Consensus 401 dg~i~iwd~~~~~~--~~~~~~--------~~~~~~~~~~~~s~~~~~l~~g 442 (552)
||++++|+...++. ..++.. .+...+.+ +.|.+++.++++=
T Consensus 181 dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~s-I~wl~~~~flv~y 231 (388)
T 1xip_A 181 DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLS-VTILSPQDFLAVF 231 (388)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEE-EEESSSSEEEEEE
T ss_pred CCcEEEEcCCCccccccceecCCcccccccCCCeeEEE-EEEecCCeEEEEE
Confidence 99999999987775 555621 12344444 6888888888763
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=6.5e-08 Score=102.73 Aligned_cols=280 Identities=12% Similarity=0.074 Sum_probs=174.2
Q ss_pred EcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCC----------e-EEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCC
Q 008820 260 VGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHK----------V-MAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328 (552)
Q Consensus 260 ~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~----------v-~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 328 (552)
..+..++.++.++.|..+|..+|+.+.++...... + ..+++. + ..++.++.|+.|..+|..+++..
T Consensus 64 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~v~v~~~dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 64 FHDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--G-DKVYVGTLDGRLIALDAKTGKAI 140 (668)
T ss_dssp EETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--B-TEEEEECTTSEEEEEETTTCCEE
T ss_pred EECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE--C-CEEEEEcCCCEEEEEECCCCCEe
Confidence 34778888888999999999999999988643221 0 122332 2 25677888999999999988765
Q ss_pred ccccccccCCCceeeeEEEEeeCCCEEEEeeC------CCcEEEEECCCCceeEEecCCC--------------------
Q 008820 329 EPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG------DRTIKAWSLLDGTLSCTMSGHK-------------------- 382 (552)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~------dg~i~iwd~~~~~~~~~~~~h~-------------------- 382 (552)
................ .....+..++++.. +|.|+.+|.++|+.+..+....
T Consensus 141 W~~~~~~~~~~~~~~~--~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITG--APRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEEECSCTTSSCBCCS--CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred eeeccCCCCCcceecC--CCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 5443321110000000 00012345555543 5899999999999998875210
Q ss_pred -----------CCeEEEEEe--CCEEEEEeCCC-------------------cEEEEECCCCceeEEEecCCCC------
Q 008820 383 -----------SAVSTLAVC--NGVLYSGSRDG-------------------TIRLWSLSDHSLLTVLEEDSSG------ 424 (552)
Q Consensus 383 -----------~~v~~l~~~--~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~------ 424 (552)
.....++++ .+.++.++.++ .|..+|.++|+.+..+...+..
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~ 298 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTA 298 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccC
Confidence 011235666 45888887766 3999999999999888754211
Q ss_pred -ceEEEEEEcCCCC---EEEEEECCCcEEEEeCC--cceeeeeccc------------ceE-------------------
Q 008820 425 -AVSSVLSLTAVQH---TLVVSHESGSIKVWRND--KFMKSMQTHK------------GSV------------------- 467 (552)
Q Consensus 425 -~~~~~~~~s~~~~---~l~~g~~dg~i~iwd~~--~~~~~~~~h~------------~~v------------------- 467 (552)
.......+..+|+ .++.++.+|.++++|.. +.+....... .++
T Consensus 299 ~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~ 378 (668)
T 1kv9_A 299 TQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPF 378 (668)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTT
T ss_pred CCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCc
Confidence 1111123334665 68889999999999953 3332211100 000
Q ss_pred -------EEEEecCCEEEEE------------------------------------eCCCeEEEEecCCCeeeeeeccCC
Q 008820 468 -------FAVFLEGKWLFTG------------------------------------GWDKTVSVQELAGDEFEEDVIPTG 504 (552)
Q Consensus 468 -------~~v~~~~~~l~sg------------------------------------s~dg~i~iwd~~~~~~~~~~~~~~ 504 (552)
.+++++...++.. ..+|.|+.||+.+++.........
T Consensus 379 G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~ 458 (668)
T 1kv9_A 379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT 458 (668)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS
T ss_pred cccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC
Confidence 2333333443321 134889999999998877655432
Q ss_pred CcccCcceEEEEEeCCeEEEEeCCCeEEEEEecCCcceeEEEecc
Q 008820 505 AIPCGSVITALLYWQGKLFVGCADRTVKIALCNRQIPEIFSLLLH 549 (552)
Q Consensus 505 ~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~~~~~~~~~~~gh 549 (552)
.. .-..+...++.+++++.||.++.||.. +++.+.++...
T Consensus 459 ~~----~~~~~~t~gg~vf~g~~dg~l~a~d~~-tG~~l~~~~~~ 498 (668)
T 1kv9_A 459 HW----NGGTLSTAGNLVFQGTAAGQMHAYSAD-KGEALWQFEAQ 498 (668)
T ss_dssp SC----CCCEEEETTTEEEEECTTSEEEEEETT-TCCEEEEEECS
T ss_pred CC----cCceeEeCCCEEEEECCcccchhhhhh-cChhheEecCC
Confidence 11 112344457889999999999999987 67777776543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-06 Score=81.54 Aligned_cols=234 Identities=13% Similarity=0.097 Sum_probs=142.7
Q ss_pred EeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEE-EEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC
Q 008820 247 DLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVH-TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (552)
Q Consensus 247 ~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (552)
.+..+...+.+++++ +.+.++...++.|..||.. ++... .+......+.++++.+++. ++++...++.|..+|..
T Consensus 56 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~ 133 (300)
T 2qc5_A 56 EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD 133 (300)
T ss_dssp ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT
T ss_pred ECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC
Confidence 344445678899998 6666666667889999987 55432 2222446789999987654 66666668899999876
Q ss_pred CCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEE-ecCCCCCeEEEEEe-CCEEEEEe-C
Q 008820 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCT-MSGHKSAVSTLAVC-NGVLYSGS-R 400 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~-~~~l~s~~-~ 400 (552)
+... ... ... .. ......++.++++..++...++.|..+|. +++.... ...+...+.+++++ ++.++.+. .
T Consensus 134 -g~~~-~~~-~~~-~~-~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 207 (300)
T 2qc5_A 134 -GTIY-EYD-LPN-KG-SYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM 207 (300)
T ss_dssp -SCEE-EEE-CSS-TT-CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred -CCEE-Ecc-CCC-CC-CCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC
Confidence 3211 111 111 11 11223456677886666666788999998 5554432 23345568899998 55454444 5
Q ss_pred CCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcceeeee--cccceEEEEEe--cCCE
Q 008820 401 DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQ--THKGSVFAVFL--EGKW 476 (552)
Q Consensus 401 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~--~h~~~v~~v~~--~~~~ 476 (552)
.+.|..||. +++.............. .++++++|++.++...++.|..||.......+. .....+.++.. +|+.
T Consensus 208 ~~~i~~~~~-~g~~~~~~~~~~~~~~~-~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l 285 (300)
T 2qc5_A 208 GNKIGRITT-TGEISEYDIPTPNARPH-AITAGKNSEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSV 285 (300)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEE-EEEECSTTCEEEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSCE
T ss_pred CCEEEEEcC-CCcEEEEECCCCCCCce-EEEECCCCCEEEeccCCCeEEEECCCCcEEEEECCccCCccceeEeCCCCCE
Confidence 678999998 55544322211122333 368899998666665678999999754333332 22344555555 5664
Q ss_pred EEEEeCCCeEEEEecC
Q 008820 477 LFTGGWDKTVSVQELA 492 (552)
Q Consensus 477 l~sgs~dg~i~iwd~~ 492 (552)
.++.. . .|..+|.+
T Consensus 286 ~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 286 WFALK-C-KIGKLNLN 299 (300)
T ss_dssp EEECS-S-EEEEEEEC
T ss_pred EEEcc-C-ceEEeCCC
Confidence 44443 4 67666653
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=6.3e-07 Score=95.13 Aligned_cols=268 Identities=12% Similarity=0.073 Sum_probs=164.5
Q ss_pred eEEEeeCCCeEEEEEeecCccc----------e-EEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCC----CCeEE
Q 008820 233 DLVNGLSKGNVKFKDLQGHRDC----------V-TGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHD----HKVMA 297 (552)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~H~~~----------V-~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~----~~v~~ 297 (552)
.+..........+|++...... + ..+++.+..++.++.|+.|..+|..+|+.+..+.... ..+.+
T Consensus 77 ~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~ 156 (668)
T 1kv9_A 77 RVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITG 156 (668)
T ss_dssp EEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCS
T ss_pred eEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecC
Confidence 3333333445567877543321 1 2345567888899999999999999999998886531 11111
Q ss_pred -EEEecCCCCEEEEEcC------CCcEEEEeCCCCCCCccccccccCCC--------------------------ceeee
Q 008820 298 -VVYVDEDQPLCISGDS------GGGIFVWSFSFPLGHEPLKKWNEEKD--------------------------WRYSG 344 (552)
Q Consensus 298 -v~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~--------------------------~~~~~ 344 (552)
... . ++ .++.++. +|.|..+|..+++............. ...-.
T Consensus 157 ~P~v-~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~ 233 (668)
T 1kv9_A 157 APRV-V-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWD 233 (668)
T ss_dssp CCEE-E-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCS
T ss_pred CCEE-E-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCcccc
Confidence 111 1 33 3344432 58999999988776544332110000 00001
Q ss_pred EEEEeeCCCEEEEeeCCC-------------------cEEEEECCCCceeEEecC--CC-------CCeEEEEEe-CC--
Q 008820 345 IHALTTSGRYLYTGSGDR-------------------TIKAWSLLDGTLSCTMSG--HK-------SAVSTLAVC-NG-- 393 (552)
Q Consensus 345 ~~~~~~~~~~l~sgs~dg-------------------~i~iwd~~~~~~~~~~~~--h~-------~~v~~l~~~-~~-- 393 (552)
..++.++.+.++.++.++ .|..+|.++|+.+..++. |. .+.....+. ++
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~ 313 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP 313 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence 235666777888887766 399999999999988864 22 222222222 33
Q ss_pred --EEEEEeCCCcEEEEECCCCceeEEEecCCCCc----------------------------------eEEEEEEcCCCC
Q 008820 394 --VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGA----------------------------------VSSVLSLTAVQH 437 (552)
Q Consensus 394 --~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~s~~~~ 437 (552)
.++.++.+|.++++|..+|+.+.......... ....++++|+..
T Consensus 314 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g 393 (668)
T 1kv9_A 314 RKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG 393 (668)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred EEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC
Confidence 58899999999999999999885554321000 000146777766
Q ss_pred EEEEEE------------------------------------CCCcEEEEeCCcc--eeeeecccceE-EEEEecCCEEE
Q 008820 438 TLVVSH------------------------------------ESGSIKVWRNDKF--MKSMQTHKGSV-FAVFLEGKWLF 478 (552)
Q Consensus 438 ~l~~g~------------------------------------~dg~i~iwd~~~~--~~~~~~h~~~v-~~v~~~~~~l~ 478 (552)
++++.. .+|.|..||..+. +.....+.... ..+...+.+++
T Consensus 394 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf 473 (668)
T 1kv9_A 394 LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVF 473 (668)
T ss_dssp EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEE
T ss_pred EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEE
Confidence 666522 2377888996543 33333222211 23445788999
Q ss_pred EEeCCCeEEEEecCCCeeeeeeccC
Q 008820 479 TGGWDKTVSVQELAGDEFEEDVIPT 503 (552)
Q Consensus 479 sgs~dg~i~iwd~~~~~~~~~~~~~ 503 (552)
.++.||.++.||.++++....+...
T Consensus 474 ~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 474 QGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp EECTTSEEEEEETTTCCEEEEEECS
T ss_pred EECCcccchhhhhhcChhheEecCC
Confidence 9999999999999999887766554
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.8e-08 Score=96.98 Aligned_cols=168 Identities=9% Similarity=-0.030 Sum_probs=116.4
Q ss_pred eeEEEEeeCCCEEEEeeCCCcEEEEECCCCc-----------eeEEecCCCCCeEEEEEeCCEEEEEeCCCcEEEEECCC
Q 008820 343 SGIHALTTSGRYLYTGSGDRTIKAWSLLDGT-----------LSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSD 411 (552)
Q Consensus 343 ~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-----------~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~ 411 (552)
....++++....+++|+.++ +.+|++...+ ..... .+.. |+.++|+++.|+++ .++.|++||+++
T Consensus 40 ~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~s 115 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCFHGDQVLVS-TRNALYSLDLEE 115 (388)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEEETTEEEEE-ESSEEEEEESSS
T ss_pred ccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEECCCEEEEE-cCCcEEEEEchh
Confidence 34568888889999999985 6669875332 22223 3566 99999955578777 889999999988
Q ss_pred CceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcceeeeecccceEEEEEecCCEEEEEeCCCeEEEEec
Q 008820 412 HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQEL 491 (552)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~h~~~v~~v~~~~~~l~sgs~dg~i~iwd~ 491 (552)
.........+. ..+..+....| .+++++.||.|.+||+.+.... .+...|.+++|..+-++.|..||++++|+.
T Consensus 116 l~~~~~~~~~~-~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~--~~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~ 189 (388)
T 1xip_A 116 LSEFRTVTSFE-KPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTK--QLAQNVTSFDVTNSQLAVLLKDRSFQSFAW 189 (388)
T ss_dssp TTCEEEEEECS-SCEEEEEECSS---EEEEEETTSEEEEEETTTCCEE--EEEESEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred hhccCccceee-cceeeEEecCC---CEEEEECCCCEEEEEccCCccc--cccCCceEEEEcCCceEEEEcCCcEEEEcC
Confidence 76555554443 33444333333 3888999999999998743322 256789999995555889999999999999
Q ss_pred CCCee--eeeeccCCC----cccCcceEEEEEeCC
Q 008820 492 AGDEF--EEDVIPTGA----IPCGSVITALLYWQG 520 (552)
Q Consensus 492 ~~~~~--~~~~~~~~~----~~~~~~v~~l~~~~~ 520 (552)
.+... ...+..... ..+...|.++.|.++
T Consensus 190 ~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~ 224 (388)
T 1xip_A 190 RNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSP 224 (388)
T ss_dssp ETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSS
T ss_pred CCccccccceecCCcccccccCCCeeEEEEEEecC
Confidence 87764 333321111 113677999999954
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-06 Score=83.44 Aligned_cols=223 Identities=10% Similarity=0.095 Sum_probs=136.3
Q ss_pred CccceEEEEEc---CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCC
Q 008820 251 HRDCVTGLAVG---GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLG 327 (552)
Q Consensus 251 H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 327 (552)
+..--.+..|+ +.++++...++.|..||..+++. ..+. ....+.++++.+++. ++++. ++.|.+||.+++..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~-l~v~~--~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGG-YVATI--GTKFCALNWKEQSA 85 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSS-EEEEE--TTEEEEEETTTTEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCC-EEEEE--CCeEEEEECCCCcE
Confidence 33455677887 45677777789999999988765 3333 457899999999877 44443 57899999876532
Q ss_pred CccccccccCCCceeeeEEEEeeCCCEEEEeeCC---------CcEEEEECCC-CceeEEecCCCCCeEEEEEe-CC-EE
Q 008820 328 HEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD---------RTIKAWSLLD-GTLSCTMSGHKSAVSTLAVC-NG-VL 395 (552)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d---------g~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~-~~-~l 395 (552)
.. +.............-..+.++|+++++...+ ..-.+|.+.. ++... +..+....+.++|+ ++ .+
T Consensus 86 ~~-~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~l 163 (297)
T 3g4e_A 86 VV-LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIF 163 (297)
T ss_dssp EE-EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEE
T ss_pred EE-EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEE
Confidence 21 1111111111222334677888855544221 2234554432 33332 32233456889998 44 44
Q ss_pred -EEEeCCCcEEEEEC--CCCcee--EEEec-C-CCCceEEEEEEcCCCCEEEEEECCCcEEEEeC--Ccceeeeecccce
Q 008820 396 -YSGSRDGTIRLWSL--SDHSLL--TVLEE-D-SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN--DKFMKSMQTHKGS 466 (552)
Q Consensus 396 -~s~~~dg~i~iwd~--~~~~~~--~~~~~-~-~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~--~~~~~~~~~h~~~ 466 (552)
++.+.++.|..||+ .++... ..+.. . ..+.. .-++++++|++.++...++.|..||. ++.+..+..+...
T Consensus 164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p-~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~ 242 (297)
T 3g4e_A 164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIP-DGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDK 242 (297)
T ss_dssp EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEE-EEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSB
T ss_pred EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCC-CeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCC
Confidence 55666889999997 455432 11211 1 11223 33689999988888778889999996 4567777777777
Q ss_pred EEEEEe---cCCEEEEEe
Q 008820 467 VFAVFL---EGKWLFTGG 481 (552)
Q Consensus 467 v~~v~~---~~~~l~sgs 481 (552)
++++.| +++.|+..+
T Consensus 243 ~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 243 TTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEEEEEESGGGCEEEEEE
T ss_pred ceEEEEeCCCCCEEEEEc
Confidence 888887 445555444
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=4.2e-07 Score=97.32 Aligned_cols=239 Identities=13% Similarity=0.092 Sum_probs=143.7
Q ss_pred cCccceEEEEEc--CCEEEE-----EeCCCcEEEEeCCCCeEEEE-EeCCCCCeEEEEEecCCCCEEEEEcCC-------
Q 008820 250 GHRDCVTGLAVG--GGFLFS-----SSFDKSIHVWSLKDFSHVHT-FKGHDHKVMAVVYVDEDQPLCISGDSG------- 314 (552)
Q Consensus 250 ~H~~~V~~l~~s--~~~l~s-----~s~dg~I~iwd~~~~~~~~~-~~~h~~~v~~v~~~~~~~~~l~s~~~d------- 314 (552)
+|...+..++|| |++||- |+.+.+|++||+.+++.+.. +.. .....++|+ +++.++++...+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence 456678888999 787774 33346799999999986543 221 113567899 777555444332
Q ss_pred -----CcEEEEeCCCCCCCcc-cccccc-CCCceeeeEEEEeeCCCEEEEee----CCCcEEEEECCCCc-eeEEecCCC
Q 008820 315 -----GGIFVWSFSFPLGHEP-LKKWNE-EKDWRYSGIHALTTSGRYLYTGS----GDRTIKAWSLLDGT-LSCTMSGHK 382 (552)
Q Consensus 315 -----g~i~vwd~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~l~sgs----~dg~i~iwd~~~~~-~~~~~~~h~ 382 (552)
..|++|++.++..... +..... +... ..-..+++++++|+... .++.|+++|+.++. ....+..+.
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~--~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~ 280 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHR--YVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL 280 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCS--EEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeE--EEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC
Confidence 2499999887543221 211111 1111 12246799999665433 23589999998764 345565566
Q ss_pred CCeEEEEEe-CCEE-EEEeCC---CcEEEEECCCCce--eEEEecCCCCceEEEEEEcCCCCEEEEEECCC---cEEEEe
Q 008820 383 SAVSTLAVC-NGVL-YSGSRD---GTIRLWSLSDHSL--LTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG---SIKVWR 452 (552)
Q Consensus 383 ~~v~~l~~~-~~~l-~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd 452 (552)
......... ++.| +....+ +.|..+|+.++.. ...+..+.... . .++++++.|+....++ .|++||
T Consensus 281 ~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~---~-~~s~~g~~lv~~~~~~g~~~l~~~d 356 (693)
T 3iuj_A 281 DADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQV---L-TVHSGSGYLFAEYMVDATARVEQFD 356 (693)
T ss_dssp SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC---E-EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred CceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCE---E-EEEEECCEEEEEEEECCeeEEEEEE
Confidence 655554333 5544 444443 6799999988754 34454443332 2 7888888887766543 688888
Q ss_pred CCc-ceeeeec-ccceEEEEEe--cCCEEEEEeCC----CeEEEEecCCCeee
Q 008820 453 NDK-FMKSMQT-HKGSVFAVFL--EGKWLFTGGWD----KTVSVQELAGDEFE 497 (552)
Q Consensus 453 ~~~-~~~~~~~-h~~~v~~v~~--~~~~l~sgs~d----g~i~iwd~~~~~~~ 497 (552)
... ....+.. +.+.+..+++ ++..++....+ ++++.||+.+++..
T Consensus 357 ~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 357 YEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp TTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred CCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 653 3333332 3345555554 66655544434 78999999877544
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-07 Score=92.50 Aligned_cols=257 Identities=10% Similarity=-0.069 Sum_probs=160.8
Q ss_pred cEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEc---------CCCcEEEEeCCCCCCCccccccccCC--Cce
Q 008820 273 SIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGD---------SGGGIFVWSFSFPLGHEPLKKWNEEK--DWR 341 (552)
Q Consensus 273 ~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~ 341 (552)
+|.+.|..+++.+.++.....+ .++++|++..+.++.+ .++.|.+||..+.+....+....... ...
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 7889999999999999866666 7999999887766653 47899999999877655554320000 000
Q ss_pred eeeEEEEeeCCCEEEEeeC--CCcEEE--EECCCCceeEEecCCCCCeEEEEEe-CCEEEEEeCCCcEEEEECCC-----
Q 008820 342 YSGIHALTTSGRYLYTGSG--DRTIKA--WSLLDGTLSCTMSGHKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSD----- 411 (552)
Q Consensus 342 ~~~~~~~~~~~~~l~sgs~--dg~i~i--wd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~----- 411 (552)
...-..++|+|++++++.. +..+.+ +|..+ +..+..-. . ..+... ...+++.+.||.+.+.|+.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C-FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C-CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c-eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 1113589999998888764 467888 88876 44443211 1 112223 34667778899999999986
Q ss_pred CceeEEEe-cCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc----ceeeeec------------ccceEEEEEecC
Q 008820 412 HSLLTVLE-EDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK----FMKSMQT------------HKGSVFAVFLEG 474 (552)
Q Consensus 412 ~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~----~~~~~~~------------h~~~v~~v~~~~ 474 (552)
++...... .-..+.... . .+++..++..+. +.+.+.|... .+..+.. +......+++++
T Consensus 200 ~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg 275 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT 275 (368)
T ss_dssp EECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT
T ss_pred CeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCC
Confidence 43221100 000011111 3 555666555556 8999999642 1121110 111224577788
Q ss_pred CEEEEEeC---------CCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-Ce--EEEEe-CCCeEEEEEecCCcc
Q 008820 475 KWLFTGGW---------DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-GK--LFVGC-ADRTVKIALCNRQIP 541 (552)
Q Consensus 475 ~~l~sgs~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~--l~s~s-~Dg~v~iw~~~~~~~ 541 (552)
+.++.+.. ++.+.++|+.+.+....+.. ......+++++ +. +++.. .++.|.++|.. +.+
T Consensus 276 ~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v------g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~-t~k 348 (368)
T 1mda_H 276 DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN------GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA-SDQ 348 (368)
T ss_dssp TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE------EEEECEEEECCSSSCEEEEEETTTTEEEEEESS-SCE
T ss_pred CEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC------CCCcceEEECCCCCEEEEEccCCCCeEEEEECC-CCc
Confidence 88886543 23566999998877655433 33577889985 33 56666 59999999997 565
Q ss_pred eeEEEe
Q 008820 542 EIFSLL 547 (552)
Q Consensus 542 ~~~~~~ 547 (552)
.+.++.
T Consensus 349 vv~~I~ 354 (368)
T 1mda_H 349 DQSSVE 354 (368)
T ss_dssp EEEECC
T ss_pred EEEEEE
Confidence 565554
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-06 Score=90.43 Aligned_cols=276 Identities=12% Similarity=0.057 Sum_probs=168.7
Q ss_pred cCCEEEEEeC-CCcEEEEeC-CCCeEEEEEeCCCCC-----------eEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCC
Q 008820 261 GGGFLFSSSF-DKSIHVWSL-KDFSHVHTFKGHDHK-----------VMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLG 327 (552)
Q Consensus 261 s~~~l~s~s~-dg~I~iwd~-~~~~~~~~~~~h~~~-----------v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 327 (552)
.+..++.++. ++.|..+|. .+|+.+..+...... -..+++. ++ .++.++.|+.+..+|..+++.
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~v~~~dg~l~alD~~tG~~ 137 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AG-QIVKKQANGHLLALDAKTGKI 137 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TT-EEEEECTTSEEEEEETTTCCE
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE--CC-EEEEEeCCCEEEEEECCCCCE
Confidence 4777777777 899999999 999999887643210 0122332 23 567788899999999988876
Q ss_pred CccccccccCC--CceeeeEEEEeeCCCEEEEeeC------CCcEEEEECCCCceeEEecCCCCC---------------
Q 008820 328 HEPLKKWNEEK--DWRYSGIHALTTSGRYLYTGSG------DRTIKAWSLLDGTLSCTMSGHKSA--------------- 384 (552)
Q Consensus 328 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~sgs~------dg~i~iwd~~~~~~~~~~~~h~~~--------------- 384 (552)
........... .....++ ..+..+++++. ++.|+.+|.++|+.+.++......
T Consensus 138 ~W~~~~~~~~~~~~~~~~P~----v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 213 (571)
T 2ad6_A 138 NWEVEVCDPKVGSTLTQAPF----VAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPH 213 (571)
T ss_dssp EEEEECCCGGGTCBCCSCCE----EETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred EEEecCCCCCccceeccCCE----EECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccc
Confidence 54433211000 0001111 12345555554 799999999999999887532211
Q ss_pred ----------------------e-EEEEEe--CCEEEEEeCC----------------CcEEEEECCCCceeEEEecCCC
Q 008820 385 ----------------------V-STLAVC--NGVLYSGSRD----------------GTIRLWSLSDHSLLTVLEEDSS 423 (552)
Q Consensus 385 ----------------------v-~~l~~~--~~~l~s~~~d----------------g~i~iwd~~~~~~~~~~~~~~~ 423 (552)
+ ..+++. .+.++.+..+ +.|..+|.++|+.+..+.....
T Consensus 214 ~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~ 293 (571)
T 2ad6_A 214 YGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPH 293 (571)
T ss_dssp GCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCC
Confidence 0 134555 3566666532 3599999999999988875421
Q ss_pred C-------ceEEEEEEcCCCC---EEEEEECCCcEEEEeCC--cceeeeeccc-------------ceE-----------
Q 008820 424 G-------AVSSVLSLTAVQH---TLVVSHESGSIKVWRND--KFMKSMQTHK-------------GSV----------- 467 (552)
Q Consensus 424 ~-------~~~~~~~~s~~~~---~l~~g~~dg~i~iwd~~--~~~~~~~~h~-------------~~v----------- 467 (552)
. ....+.....+|+ .++.++.+|.++++|.. +.+....... .++
T Consensus 294 d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~ 373 (571)
T 2ad6_A 294 DEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDH 373 (571)
T ss_dssp CSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTC
T ss_pred cccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCC
Confidence 1 1111123334674 57788899999999954 3333222110 111
Q ss_pred -----------------EEEEecCCEEEEEe-------------------------------------CCCeEEEEecCC
Q 008820 468 -----------------FAVFLEGKWLFTGG-------------------------------------WDKTVSVQELAG 493 (552)
Q Consensus 468 -----------------~~v~~~~~~l~sgs-------------------------------------~dg~i~iwd~~~ 493 (552)
.+++++...++..+ .+|.|..||..+
T Consensus 374 ~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t 453 (571)
T 2ad6_A 374 KGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT 453 (571)
T ss_dssp CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT
T ss_pred CceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCC
Confidence 12333445555443 357899999999
Q ss_pred CeeeeeeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEecCCcceeEEEec
Q 008820 494 DEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCNRQIPEIFSLLL 548 (552)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~~~~~~~~~~~g 548 (552)
++............ . ..+...++.+++++.||.|+.||.. +++.+.++..
T Consensus 454 G~~~W~~~~~~~~~-~---~~~~t~gg~v~~g~~dg~l~a~D~~-tG~~lw~~~~ 503 (571)
T 2ad6_A 454 GKAKWTKWEKFAAW-G---GTLYTKGGLVWYATLDGYLKALDNK-DGKELWNFKM 503 (571)
T ss_dssp CCEEEEEEESSCCC-S---BCEEETTTEEEEECTTSEEEEEETT-TCCEEEEEEC
T ss_pred CCEEEEecCCCCcc-c---eeEEECCCEEEEEcCCCeEEEEECC-CCCEEEEEeC
Confidence 88877654432111 1 1123346888889999999999987 6777766653
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=4.7e-07 Score=96.95 Aligned_cols=232 Identities=13% Similarity=0.072 Sum_probs=140.6
Q ss_pred CCCCeEEEEEecCCCCEEEEEcCC----CcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCc---
Q 008820 291 HDHKVMAVVYVDEDQPLCISGDSG----GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT--- 363 (552)
Q Consensus 291 h~~~v~~v~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~--- 363 (552)
|...+..++|+|++..++++.+.. ..|++||+.+++.... .... ......+|+ |++.|+.++.+..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~----~k~~~~~Ws-Dg~~l~y~~~~~~~~~ 199 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD----VKFSGISWL-GNEGFFYSSYDKPDGS 199 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE----EESCCCEEE-TTTEEEEEESSCCC--
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC----ceeccEEEe-CCCEEEEEEecCcccc
Confidence 455788899999988776665444 4699999998753221 1110 111234688 9998888887743
Q ss_pred ----------EEEEECCCCce--eEEe--cC-CCCCeEEEEEe-CC-EE-EEEeC---CCcEEEEECCCCc-eeEEEecC
Q 008820 364 ----------IKAWSLLDGTL--SCTM--SG-HKSAVSTLAVC-NG-VL-YSGSR---DGTIRLWSLSDHS-LLTVLEED 421 (552)
Q Consensus 364 ----------i~iwd~~~~~~--~~~~--~~-h~~~v~~l~~~-~~-~l-~s~~~---dg~i~iwd~~~~~-~~~~~~~~ 421 (552)
|++|++.++.. ...+ .. |...+.++.++ ++ +| ++.+. ++.|+++|+.++. ....+..+
T Consensus 200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~ 279 (693)
T 3iuj_A 200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD 279 (693)
T ss_dssp -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence 99999987653 2233 33 44557788898 44 44 44432 3589999998764 34455444
Q ss_pred CCCceEEEEEEcCCCCEEEEEEC-C---CcEEEEeCCcc----eeeeecccceEEEEEecCCEEEEEeCC-C--eEEEEe
Q 008820 422 SSGAVSSVLSLTAVQHTLVVSHE-S---GSIKVWRNDKF----MKSMQTHKGSVFAVFLEGKWLFTGGWD-K--TVSVQE 490 (552)
Q Consensus 422 ~~~~~~~~~~~s~~~~~l~~g~~-d---g~i~iwd~~~~----~~~~~~h~~~v~~v~~~~~~l~sgs~d-g--~i~iwd 490 (552)
.. .... .+++++..|+..+. + +.|..+|+... .+.+..|...+..+++++++|+....+ + .|++||
T Consensus 280 ~~-~~~~--~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d 356 (693)
T 3iuj_A 280 LD-ADVS--LVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFD 356 (693)
T ss_dssp SS-SCEE--EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEEC
T ss_pred CC-ceEE--EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEE
Confidence 32 2222 25566665554443 3 57888886542 245555554444777888887766554 3 689999
Q ss_pred cCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEEeCC----CeEEEEEec
Q 008820 491 LAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGCAD----RTVKIALCN 537 (552)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~D----g~v~iw~~~ 537 (552)
+.++........ ....+..+.+++ +.++....+ +.++.||+.
T Consensus 357 ~~g~~~~~l~~p-----~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 357 YEGKRVREVALP-----GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp TTSCEEEEECCS-----SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred CCCCeeEEeecC-----CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence 986644322111 134466666663 334443333 788888875
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.92 E-value=7.2e-07 Score=85.20 Aligned_cols=238 Identities=11% Similarity=0.064 Sum_probs=140.5
Q ss_pred eCCCCCeEEEEEecCCCCEEEE-------EcCCCcEEEEeCCCCCCCccccccc-cCCCceeeeEEEEeeC-CCEEEEee
Q 008820 289 KGHDHKVMAVVYVDEDQPLCIS-------GDSGGGIFVWSFSFPLGHEPLKKWN-EEKDWRYSGIHALTTS-GRYLYTGS 359 (552)
Q Consensus 289 ~~h~~~v~~v~~~~~~~~~l~s-------~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~l~sgs 359 (552)
...-....+++|.+++ .++++ +..++.|..||..+++... +.... .... ......++.++ ++ ++.++
T Consensus 14 ~~~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~-~~~~~i~~~~~~g~-l~v~~ 89 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYG-GIPAGCQCDRDANQ-LFVAD 89 (314)
T ss_dssp ECCCTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEE-CCEEEEEECSSSSE-EEEEE
T ss_pred hccCCCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecccCCCC-CCCceEEEecCCCc-EEEEE
Confidence 3344566899998765 46666 5678999999987654221 11100 0000 11112345666 54 44444
Q ss_pred CCCcEEEEECCCCceeEE-ecC----CCCCeEEEEEe-CC-EEEEEeCC---------------CcEEEEECCCCceeEE
Q 008820 360 GDRTIKAWSLLDGTLSCT-MSG----HKSAVSTLAVC-NG-VLYSGSRD---------------GTIRLWSLSDHSLLTV 417 (552)
Q Consensus 360 ~dg~i~iwd~~~~~~~~~-~~~----h~~~v~~l~~~-~~-~l~s~~~d---------------g~i~iwd~~~~~~~~~ 417 (552)
..+.|.+||.. ++.... ... ....+.+++++ ++ +.++...+ +.|..||.. ++....
T Consensus 90 ~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 90 MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV 167 (314)
T ss_dssp TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence 44579999988 665433 221 12347899998 44 44444444 567777765 554333
Q ss_pred EecCCCCceEEEEEEc----CCCCEEEEE-ECCCcEEEEeCC---c-----ceeeeeccc-ceEEEEEe--cCCEEEEEe
Q 008820 418 LEEDSSGAVSSVLSLT----AVQHTLVVS-HESGSIKVWRND---K-----FMKSMQTHK-GSVFAVFL--EGKWLFTGG 481 (552)
Q Consensus 418 ~~~~~~~~~~~~~~~s----~~~~~l~~g-~~dg~i~iwd~~---~-----~~~~~~~h~-~~v~~v~~--~~~~l~sgs 481 (552)
.... ..... ++++ ++++.++++ ..++.|.+||.. + ....+..+. .....+.+ +|+++++..
T Consensus 168 ~~~~--~~~~~-i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~ 244 (314)
T 1pjx_A 168 DTAF--QFPNG-IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp EEEE--SSEEE-EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred ccCC--CCcce-EEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence 2221 12233 6788 998766555 467899999853 1 112233333 45566665 788888877
Q ss_pred CCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-Ce-EEEEe-CCCeEEEEEecCCc
Q 008820 482 WDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-GK-LFVGC-ADRTVKIALCNRQI 540 (552)
Q Consensus 482 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~-l~s~s-~Dg~v~iw~~~~~~ 540 (552)
.++.|.+||..+++........ ...+.++++++ +. |++++ .++.|..|+++..+
T Consensus 245 ~~~~i~~~d~~~g~~~~~~~~~-----~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 245 GSSHIEVFGPDGGQPKMRIRCP-----FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp TTTEEEEECTTCBSCSEEEECS-----SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred CCCEEEEEcCCCCcEeEEEeCC-----CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 8899999999865544333221 34588899974 43 65554 56899999987543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-06 Score=83.07 Aligned_cols=222 Identities=13% Similarity=0.105 Sum_probs=134.5
Q ss_pred EeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEE
Q 008820 288 FKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAW 367 (552)
Q Consensus 288 ~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iw 367 (552)
+..+..-..+..|+++++.++++...++.|..||..++.. ..+.... . ....++++++++++ +. ++.|.+|
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~----~~~~~~~--~-~~~i~~~~dG~l~v-~~-~~~l~~~ 78 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV----QRVTMDA--P-VSSVALRQSGGYVA-TI-GTKFCAL 78 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE----EEEECSS--C-EEEEEEBTTSSEEE-EE-TTEEEEE
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE----EEEeCCC--c-eEEEEECCCCCEEE-EE-CCeEEEE
Confidence 3344455678899998888888888999999999886532 1111111 1 22346778888444 44 5679999
Q ss_pred ECCCCceeEEecC----CCCCeEEEEEe-CCEEEEEe-C---------CCcEEEEECCC-CceeEEEecCCCCceEEEEE
Q 008820 368 SLLDGTLSCTMSG----HKSAVSTLAVC-NGVLYSGS-R---------DGTIRLWSLSD-HSLLTVLEEDSSGAVSSVLS 431 (552)
Q Consensus 368 d~~~~~~~~~~~~----h~~~v~~l~~~-~~~l~s~~-~---------dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~ 431 (552)
|..+++....... ....++.++++ ++.++.++ . ...-.+|.+.. ++....... .. ...-++
T Consensus 79 d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~--~~-~pngi~ 155 (297)
T 3g4e_A 79 NWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ--VD-ISNGLD 155 (297)
T ss_dssp ETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE--ES-BEEEEE
T ss_pred ECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec--cc-cccceE
Confidence 9988765433321 12347888888 45444443 1 12334554432 333222221 11 223379
Q ss_pred EcCCCCEEEEE-ECCCcEEEEeCC--c--c-----eeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeee
Q 008820 432 LTAVQHTLVVS-HESGSIKVWRND--K--F-----MKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEED 499 (552)
Q Consensus 432 ~s~~~~~l~~g-~~dg~i~iwd~~--~--~-----~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~ 499 (552)
++|+++.++.+ +.++.|.+||.. . . ...+..+......+.+ +|++.++...++.|..||..+++....
T Consensus 156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQT 235 (297)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEE
T ss_pred EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEE
Confidence 99999877554 557889999852 1 1 1122223345566665 787777777788999999987766655
Q ss_pred eccCCCcccCcceEEEEEe-C--CeEEEEe
Q 008820 500 VIPTGAIPCGSVITALLYW-Q--GKLFVGC 526 (552)
Q Consensus 500 ~~~~~~~~~~~~v~~l~~~-~--~~l~s~s 526 (552)
.... ...+++++|. + +.|++++
T Consensus 236 i~~p-----~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 236 VKLP-----VDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EECS-----SSBEEEEEEESGGGCEEEEEE
T ss_pred EECC-----CCCceEEEEeCCCCCEEEEEc
Confidence 4432 3458999998 4 3455443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.7e-07 Score=86.38 Aligned_cols=230 Identities=13% Similarity=0.087 Sum_probs=140.5
Q ss_pred EEeecCccceEEEEEc--CC-EEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q 008820 246 KDLQGHRDCVTGLAVG--GG-FLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (552)
Q Consensus 246 ~~l~~H~~~V~~l~~s--~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 322 (552)
..+..+.....+..|+ ++ ++++...++.|..|+. +++ ...+..+...+..+++.+++. ++++...++.|..|+.
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSDA 114 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEECT
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEECC
Confidence 3344455667788887 55 6777778899999997 454 345555677889999998765 6566566688999987
Q ss_pred CCCCCCccccccccCCCceeeeEEEEeeCCCEEEE----eeC-------------CCcEEEEECCCCceeEEecCCCCCe
Q 008820 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYT----GSG-------------DRTIKAWSLLDGTLSCTMSGHKSAV 385 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s----gs~-------------dg~i~iwd~~~~~~~~~~~~h~~~v 385 (552)
+ +.. ..+.............-..+.++|+..++ |.. .+.|+.||..+++..... .....
T Consensus 115 ~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p 190 (305)
T 3dr2_A 115 D-GQA-HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP 190 (305)
T ss_dssp T-SCE-EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred C-CCE-EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence 5 321 11111000000001112467788887776 432 256888887777655433 33456
Q ss_pred EEEEEe-CC-EEEEEeCC------CcEEEEECCCCcee--EEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC-
Q 008820 386 STLAVC-NG-VLYSGSRD------GTIRLWSLSDHSLL--TVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND- 454 (552)
Q Consensus 386 ~~l~~~-~~-~l~s~~~d------g~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~- 454 (552)
..++|+ ++ .|+.+... +.|.+||+..+... ..+.....+.... ++++++|++. +++.+ .|.+|+..
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdg-i~~d~~G~lw-v~~~~-gv~~~~~~g 267 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDG-FCVDRGGWLW-SSSGT-GVCVFDSDG 267 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCS-EEECTTSCEE-ECCSS-EEEEECTTS
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCe-EEECCCCCEE-EecCC-cEEEECCCC
Confidence 789999 44 67766655 78999998765421 1121111122223 6889999844 44444 49999964
Q ss_pred cceeeeecccceEEEEEe--cCCEEEEEeCCCeE
Q 008820 455 KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTV 486 (552)
Q Consensus 455 ~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i 486 (552)
+.+..+..+. .+.++.| +++.|+.++.++..
T Consensus 268 ~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 268 QLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLW 300 (305)
T ss_dssp CEEEEEECSS-CCCEEEECTTSCEEEEEETTEEE
T ss_pred CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEE
Confidence 4445555444 3556666 77888888766433
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-06 Score=90.29 Aligned_cols=279 Identities=10% Similarity=0.043 Sum_probs=170.6
Q ss_pred cCCEEEEEeC-CCcEEEEeC-CCCeEEEEEeCCCCC-----------eEEEEEecCCCC---EEEEEcCCCcEEEEeCCC
Q 008820 261 GGGFLFSSSF-DKSIHVWSL-KDFSHVHTFKGHDHK-----------VMAVVYVDEDQP---LCISGDSGGGIFVWSFSF 324 (552)
Q Consensus 261 s~~~l~s~s~-dg~I~iwd~-~~~~~~~~~~~h~~~-----------v~~v~~~~~~~~---~l~s~~~dg~i~vwd~~~ 324 (552)
.+..++.++. ++.|..+|. .+|+.+..+...... ...+++.|.+.. .++.++.|+.+..+|..+
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCC
Confidence 4777877877 899999999 999999988643221 123455443333 367788899999999988
Q ss_pred CCCCccccccccCC--CceeeeEEEEeeCCCEEEEee------CCCcEEEEECCCCceeEEecCCCCC------------
Q 008820 325 PLGHEPLKKWNEEK--DWRYSGIHALTTSGRYLYTGS------GDRTIKAWSLLDGTLSCTMSGHKSA------------ 384 (552)
Q Consensus 325 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~sgs------~dg~i~iwd~~~~~~~~~~~~h~~~------------ 384 (552)
++............ .....++ + .+ ..+++++ .+|.|+.+|.++|+.+..+......
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~--v-~~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~ 216 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPY--V-VK-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK 216 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCE--E-ET-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred CCEEEeecCCCCCccceeecCCE--E-EC-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence 87654432211000 0000111 1 23 4555555 3899999999999999887532211
Q ss_pred -------------------------e-EEEEEe--CCEEEEEeCC----------------CcEEEEECCCCceeEEEec
Q 008820 385 -------------------------V-STLAVC--NGVLYSGSRD----------------GTIRLWSLSDHSLLTVLEE 420 (552)
Q Consensus 385 -------------------------v-~~l~~~--~~~l~s~~~d----------------g~i~iwd~~~~~~~~~~~~ 420 (552)
+ ..+++. .++++.+..+ +.|..+|.++|+.+..++.
T Consensus 217 ~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~ 296 (599)
T 1w6s_A 217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQK 296 (599)
T ss_dssp CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEES
T ss_pred cccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeec
Confidence 0 134454 5577777665 3899999999999988876
Q ss_pred CCCCc-------eEEEEEEc-CCC---CEEEEEECCCcEEEEeCC--cceeeeecc-------------cceE-------
Q 008820 421 DSSGA-------VSSVLSLT-AVQ---HTLVVSHESGSIKVWRND--KFMKSMQTH-------------KGSV------- 467 (552)
Q Consensus 421 ~~~~~-------~~~~~~~s-~~~---~~l~~g~~dg~i~iwd~~--~~~~~~~~h-------------~~~v------- 467 (552)
.+... ...+.... .+| ..++.++.+|.++++|.. +.+...... ..++
T Consensus 297 ~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~ 376 (599)
T 1w6s_A 297 TPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGT 376 (599)
T ss_dssp STTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCC
T ss_pred CCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCC
Confidence 53211 11112222 567 467778899999999954 333222110 0011
Q ss_pred ---------------------EEEEecCCEEEEE---------------------------------e------CCCeEE
Q 008820 468 ---------------------FAVFLEGKWLFTG---------------------------------G------WDKTVS 487 (552)
Q Consensus 468 ---------------------~~v~~~~~~l~sg---------------------------------s------~dg~i~ 487 (552)
.+++++.+++++. + .+|.|.
T Consensus 377 ~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~ 456 (599)
T 1w6s_A 377 RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIK 456 (599)
T ss_dssp CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEE
T ss_pred CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEE
Confidence 1222222222221 1 357899
Q ss_pred EEecCCCeeeeeeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEecCCcceeEEEec
Q 008820 488 VQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCNRQIPEIFSLLL 548 (552)
Q Consensus 488 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~~~~~~~~~~~g 548 (552)
.||+.+++........... .. ..+...++.++.++.||.++.||.+ +++++.++.-
T Consensus 457 A~D~~tG~~~W~~~~~~~~--~~--g~~~tagg~vf~gt~dg~l~A~D~~-tG~~lW~~~l 512 (599)
T 1w6s_A 457 AYNAITGDYKWEKMERFAV--WG--GTMATAGDLVFYGTLDGYLKARDSD-TGDLLWKFKI 512 (599)
T ss_dssp EECTTTCCEEEEEEESSCC--CS--BCEEETTTEEEEECTTSEEEEEETT-TCCEEEEEEC
T ss_pred EEECCCCCEEeEecCCCCc--cC--cceEecCCEEEEECCCCeEEEEECC-CCCEEEEeeC
Confidence 9999999887765432111 11 1234457888889999999999998 6777777653
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=2.9e-06 Score=88.31 Aligned_cols=281 Identities=9% Similarity=0.001 Sum_probs=166.1
Q ss_pred cCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCC---------eEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccc
Q 008820 261 GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHK---------VMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPL 331 (552)
Q Consensus 261 s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~---------v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 331 (552)
.+..++.++.++.|..+|..+|+.+.++...... ...+++. + ..++.++.|+.|..+|..+++.....
T Consensus 67 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~--~-~~v~~~t~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 67 SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--G-DKVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--T-TEEEEEETTTEEEEEESSSCCEEEEE
T ss_pred ECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEE--C-CEEEEEeCCCEEEEEECCCCCEEeee
Confidence 4666666666445999999999999988654321 0122231 2 35677888999999999988765443
Q ss_pred cccccCC--CceeeeEEEEe-eCCC-EEEEeeC------CCcEEEEECCCCceeEEecCCCCCe----------------
Q 008820 332 KKWNEEK--DWRYSGIHALT-TSGR-YLYTGSG------DRTIKAWSLLDGTLSCTMSGHKSAV---------------- 385 (552)
Q Consensus 332 ~~~~~~~--~~~~~~~~~~~-~~~~-~l~sgs~------dg~i~iwd~~~~~~~~~~~~h~~~v---------------- 385 (552)
....... .....++..-. .+++ .+++++. +|.|+.+|..+|+.+.........+
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~ 223 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA 223 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccc
Confidence 3221100 00111111100 1123 6666653 7899999999999988764321000
Q ss_pred -------------------------EEEEEe--CCEEEEEeC--------------------C----CcEEEEECCCCce
Q 008820 386 -------------------------STLAVC--NGVLYSGSR--------------------D----GTIRLWSLSDHSL 414 (552)
Q Consensus 386 -------------------------~~l~~~--~~~l~s~~~--------------------d----g~i~iwd~~~~~~ 414 (552)
..++++ .++++.+.. | +.|..+|..+|+.
T Consensus 224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 124454 356666653 2 6899999999999
Q ss_pred eEEEecCCCC------ceEEE-EEEc-CCCC---EEEEEECCCcEEEEeCC--cceeeeeccc-------------ceE-
Q 008820 415 LTVLEEDSSG------AVSSV-LSLT-AVQH---TLVVSHESGSIKVWRND--KFMKSMQTHK-------------GSV- 467 (552)
Q Consensus 415 ~~~~~~~~~~------~~~~~-~~~s-~~~~---~l~~g~~dg~i~iwd~~--~~~~~~~~h~-------------~~v- 467 (552)
+..++..+.. ....+ .... .+|+ .++.++.+|.++++|.. +.+....... .++
T Consensus 304 ~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~ 383 (582)
T 1flg_A 304 KWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVE 383 (582)
T ss_dssp EEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEE
T ss_pred EEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeE
Confidence 9988753211 11111 2222 4664 78889999999999953 3332222110 000
Q ss_pred ---------------------------------EEEEecCCEEEEEe---------------------------------
Q 008820 468 ---------------------------------FAVFLEGKWLFTGG--------------------------------- 481 (552)
Q Consensus 468 ---------------------------------~~v~~~~~~l~sgs--------------------------------- 481 (552)
.+++++...+++..
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~ 463 (582)
T 1flg_A 384 REGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDD 463 (582)
T ss_dssp CTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSS
T ss_pred ccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCC
Confidence 01122222333221
Q ss_pred CCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEecCCcceeEEEecc
Q 008820 482 WDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCNRQIPEIFSLLLH 549 (552)
Q Consensus 482 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~~~~~~~~~~~gh 549 (552)
.+|.|..||+.+++............ . ..+...++.++.|+.||.++.||.+ +++.+.++...
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~~~~-~---g~~~tagglvf~g~~dg~l~A~D~~-tG~~lW~~~~~ 526 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHLPLW-A---GVLATAGNLVFTGTGDGYFKAFDAK-SGKELWKFQTG 526 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESSCCC-S---CCEEETTTEEEEECTTSEEEEEETT-TCCEEEEEECS
T ss_pred CcceEEEEECCCCCEEEEecCCCCCc-c---cceEeCCCEEEEECCCCcEEEEECC-CCCEEEEecCC
Confidence 36889999999998876654432111 1 1233347888899999999999987 67777776543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=5.3e-06 Score=86.22 Aligned_cols=242 Identities=16% Similarity=0.114 Sum_probs=149.3
Q ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCC----CeEE-EEEecCCCCEEEEEcC------CCcEEEEeCCCCC
Q 008820 258 LAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH----KVMA-VVYVDEDQPLCISGDS------GGGIFVWSFSFPL 326 (552)
Q Consensus 258 l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~----~v~~-v~~~~~~~~~l~s~~~------dg~i~vwd~~~~~ 326 (552)
+++.+..++.++.|+.|..+|..+|+.+........ .+.+ .... ++ .++.++. ++.|..+|..+++
T Consensus 111 ~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 111 LAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA--KD-TVLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred cEEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE--CC-EEEEEecCCccCCCCEEEEEECCCCc
Confidence 455688899999999999999999999988764220 1211 1111 33 3444444 7999999999876
Q ss_pred CCccccccccC---------------------------------CCceeeeEEEEeeCCCEEEEeeCC------------
Q 008820 327 GHEPLKKWNEE---------------------------------KDWRYSGIHALTTSGRYLYTGSGD------------ 361 (552)
Q Consensus 327 ~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~l~sgs~d------------ 361 (552)
........... .....-...++.+....++.++.+
T Consensus 188 ~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd 267 (571)
T 2ad6_A 188 LKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGD 267 (571)
T ss_dssp EEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSC
T ss_pred EEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCC
Confidence 54433221100 000000112445555566666532
Q ss_pred ----CcEEEEECCCCceeEEecCC--C--------CCeEEEEEe-CC----EEEEEeCCCcEEEEECCCCceeEEEecCC
Q 008820 362 ----RTIKAWSLLDGTLSCTMSGH--K--------SAVSTLAVC-NG----VLYSGSRDGTIRLWSLSDHSLLTVLEEDS 422 (552)
Q Consensus 362 ----g~i~iwd~~~~~~~~~~~~h--~--------~~v~~l~~~-~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 422 (552)
+.|..+|.++|+.+..++.. . .++. +... ++ .++.++.+|.++++|..+|+.+..+....
T Consensus 268 ~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~ 346 (571)
T 2ad6_A 268 NKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDP 346 (571)
T ss_dssp CTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESST
T ss_pred ceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccC
Confidence 35999999999999887532 1 2221 1111 34 46788899999999999999988776432
Q ss_pred C-----------Cc-e-------------------------EEEEEEcCCCCEEEEEE----------------------
Q 008820 423 S-----------GA-V-------------------------SSVLSLTAVQHTLVVSH---------------------- 443 (552)
Q Consensus 423 ~-----------~~-~-------------------------~~~~~~s~~~~~l~~g~---------------------- 443 (552)
. +. + ....+++|+..++++.+
T Consensus 347 ~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g 426 (571)
T 2ad6_A 347 AVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVG 426 (571)
T ss_dssp TCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCC
T ss_pred CccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccc
Confidence 0 00 0 01136777777777664
Q ss_pred ---------------CCCcEEEEeCCc--ceeeeecccceEE--EEEecCCEEEEEeCCCeEEEEecCCCeeeeeeccCC
Q 008820 444 ---------------ESGSIKVWRNDK--FMKSMQTHKGSVF--AVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTG 504 (552)
Q Consensus 444 ---------------~dg~i~iwd~~~--~~~~~~~h~~~v~--~v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~ 504 (552)
.+|.|..||..+ .+..+... ..+. .+...+..++.++.||.|+.||.++++....+....
T Consensus 427 ~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 427 ATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp EEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 246788888653 33333221 1111 123357788889999999999999998887766543
|
| >3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A | Back alignment and structure |
|---|
Probab=98.82 E-value=3.9e-10 Score=106.81 Aligned_cols=83 Identities=10% Similarity=0.091 Sum_probs=54.7
Q ss_pred ccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhccc
Q 008820 69 YGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNF 147 (552)
Q Consensus 69 ~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 147 (552)
.++|||||||+||||+||+ ||...+.........+... ...... .........++.+++.+||+.
T Consensus 181 ~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~------~~~~~~--------~~~~~~~~~~l~~li~~~l~~ 246 (286)
T 3uqc_A 181 PQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTA------GQPIEP--------ADIDRDIPFQISAVAARSVQG 246 (286)
T ss_dssp HHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECCBCTT------SCBCCH--------HHHCTTSCHHHHHHHHHHHCT
T ss_pred chhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHHHHhc------cCCCCh--------hhcccCCCHHHHHHHHHHccc
Confidence 6999999999999999999 9977543311000000000 000000 111112334599999999999
Q ss_pred CCCCCcchhhHHHHHHhhh
Q 008820 148 DPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 148 ~p~~R~~~~~~~~~l~~~~ 166 (552)
+|.+| ++.++.+.+.++.
T Consensus 247 dP~~R-s~~el~~~L~~~~ 264 (286)
T 3uqc_A 247 DGGIR-SASTLLNLMQQAT 264 (286)
T ss_dssp TSSCC-CHHHHHHHHHHHH
T ss_pred CCccC-CHHHHHHHHHHHh
Confidence 99999 9999999988765
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=3.9e-06 Score=87.28 Aligned_cols=269 Identities=14% Similarity=0.071 Sum_probs=160.2
Q ss_pred EEEeeCCCeEEEEEeecCccc---------eEEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCC----CeE-EEE
Q 008820 234 LVNGLSKGNVKFKDLQGHRDC---------VTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH----KVM-AVV 299 (552)
Q Consensus 234 ~~~~~~~~~~~~~~l~~H~~~---------V~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~----~v~-~v~ 299 (552)
+..........+|++...... -..+++.+..++.++.|+.|..+|.++|+.+........ .+. +..
T Consensus 80 v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~ 159 (582)
T 1flg_A 80 LFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPT 159 (582)
T ss_dssp EEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCE
T ss_pred EEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCE
Confidence 333333444557877654321 133455678888999999999999999999988764321 111 111
Q ss_pred EecC---CCCEEEEEc------CCCcEEEEeCCCCCCCcccccccc-----------------------C----------
Q 008820 300 YVDE---DQPLCISGD------SGGGIFVWSFSFPLGHEPLKKWNE-----------------------E---------- 337 (552)
Q Consensus 300 ~~~~---~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~-----------------------~---------- 337 (552)
...+ +...+++++ .++.|..+|..+++.......... .
T Consensus 160 v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~ 239 (582)
T 1flg_A 160 IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVES 239 (582)
T ss_dssp EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGG
T ss_pred EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccc
Confidence 1221 122455554 378999999988765432211000 0
Q ss_pred ---CCceeeeEEEEeeCCCEEEEeeC--------------------C----CcEEEEECCCCceeEEecC--CC------
Q 008820 338 ---KDWRYSGIHALTTSGRYLYTGSG--------------------D----RTIKAWSLLDGTLSCTMSG--HK------ 382 (552)
Q Consensus 338 ---~~~~~~~~~~~~~~~~~l~sgs~--------------------d----g~i~iwd~~~~~~~~~~~~--h~------ 382 (552)
.....-...++.+....++.++. | +.|..+|.++|+.+..++. |.
T Consensus 240 ~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~ 319 (582)
T 1flg_A 240 WSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSG 319 (582)
T ss_dssp GGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccC
Confidence 00000012245556666666653 2 6899999999999998753 32
Q ss_pred --CCeEEEEE--eCC----EEEEEeCCCcEEEEECCCCceeEEEecCCCC-----------ce-----------------
Q 008820 383 --SAVSTLAV--CNG----VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSG-----------AV----------------- 426 (552)
Q Consensus 383 --~~v~~l~~--~~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~----------------- 426 (552)
.++. +.. .++ .++.++.+|.++++|..+|+.+..+...... ..
T Consensus 320 ~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~ 398 (582)
T 1flg_A 320 NNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKH 398 (582)
T ss_dssp CCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSS
T ss_pred CCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccC
Confidence 1222 222 122 6888999999999999999998777653200 00
Q ss_pred ---------------EEEEEEcCCCCEEEEEE---------------------------------CCCcEEEEeCCc--c
Q 008820 427 ---------------SSVLSLTAVQHTLVVSH---------------------------------ESGSIKVWRNDK--F 456 (552)
Q Consensus 427 ---------------~~~~~~s~~~~~l~~g~---------------------------------~dg~i~iwd~~~--~ 456 (552)
....+++|+..++++.. .+|.|..||..+ .
T Consensus 399 ~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~ 478 (582)
T 1flg_A 399 GKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKV 478 (582)
T ss_dssp CCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCE
T ss_pred CCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCE
Confidence 00135566555555433 257788888653 3
Q ss_pred eeeeecccceEE--EEEecCCEEEEEeCCCeEEEEecCCCeeeeeeccCC
Q 008820 457 MKSMQTHKGSVF--AVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTG 504 (552)
Q Consensus 457 ~~~~~~h~~~v~--~v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~ 504 (552)
+.....+. ++. .+...+..++.|+.||.++.||.++++....+....
T Consensus 479 ~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~ 527 (582)
T 1flg_A 479 VWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS 527 (582)
T ss_dssp EEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred EEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC
Confidence 33332221 111 123367788889999999999999999888776543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.80 E-value=2.8e-06 Score=77.08 Aligned_cols=187 Identities=14% Similarity=0.127 Sum_probs=131.4
Q ss_pred cCccc--eEEEEEc-CCEEEEEeCCC--cEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCC
Q 008820 250 GHRDC--VTGLAVG-GGFLFSSSFDK--SIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF 324 (552)
Q Consensus 250 ~H~~~--V~~l~~s-~~~l~s~s~dg--~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 324 (552)
.|... ...+.|+ +.++.+.+.+| .|+++|+++++.+..+..... .......+.++.+.+..-.++.+.++|..+
T Consensus 38 phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~FgeGit~~g~~ly~ltw~~~~v~v~D~~t 116 (262)
T 3nol_A 38 PHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-YFGEGISDWKDKIVGLTWKNGLGFVWNIRN 116 (262)
T ss_dssp ECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred cCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-cceeEEEEeCCEEEEEEeeCCEEEEEECcc
Confidence 45433 4788898 66666666665 899999999999998875433 322222334566767777799999999987
Q ss_pred CCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCC--C---CCeEEEEEeCCEEEEEe
Q 008820 325 PLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGH--K---SAVSTLAVCNGVLYSGS 399 (552)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h--~---~~v~~l~~~~~~l~s~~ 399 (552)
.+....+.... .. ..++++++.|+....++.|.++|..+.+.+.++.-. . ..++.+.|.++.+++..
T Consensus 117 ~~~~~ti~~~~--eG------~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~ 188 (262)
T 3nol_A 117 LRQVRSFNYDG--EG------WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANV 188 (262)
T ss_dssp CCEEEEEECSS--CC------CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEECCC--Cc------eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEE
Confidence 66554444311 11 255678887777777888999999999988876532 2 33556788877666666
Q ss_pred -CCCcEEEEECCCCceeEEEecCC----------CCceEEEEEEcCCCCEEEEEECC
Q 008820 400 -RDGTIRLWSLSDHSLLTVLEEDS----------SGAVSSVLSLTAVQHTLVVSHES 445 (552)
Q Consensus 400 -~dg~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~s~~~~~l~~g~~d 445 (552)
.++.|.+.|.++++.+..+.... ...+..-++++|+++.|++.+..
T Consensus 189 w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 189 WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 58899999999999998887531 12234447999998888877654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.79 E-value=8e-07 Score=80.62 Aligned_cols=181 Identities=15% Similarity=0.164 Sum_probs=128.8
Q ss_pred ceEEEEEc-CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcccc
Q 008820 254 CVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLK 332 (552)
Q Consensus 254 ~V~~l~~s-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 332 (552)
-...+.|+ +.++.+.+.+|.|+++|+++++.+..+ -. .........+.++.+.+..-.++.+.++|..+.+....+.
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred ccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence 35788998 666777788899999999999988877 22 2333322233466777777789999999998765554444
Q ss_pred ccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecC--CC---CCeEEEEEeCCEEEEEe-CCCcEEE
Q 008820 333 KWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSG--HK---SAVSTLAVCNGVLYSGS-RDGTIRL 406 (552)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~--h~---~~v~~l~~~~~~l~s~~-~dg~i~i 406 (552)
.. ... ..++++++.|+.+..++.|.++|..+.+.+.++.- +. ..++.+.|.++.+++.. .++.|.+
T Consensus 134 ~~--~eG------wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~v 205 (268)
T 3nok_A 134 YS--GEG------WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLE 205 (268)
T ss_dssp CS--SCC------CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEE
T ss_pred CC--Cce------eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEE
Confidence 31 111 25567888888777789999999999998887753 22 24577888877666666 5789999
Q ss_pred EECCCCceeEEEecC-----------CCCceEEEEEEcCCCCEEEEEEC
Q 008820 407 WSLSDHSLLTVLEED-----------SSGAVSSVLSLTAVQHTLVVSHE 444 (552)
Q Consensus 407 wd~~~~~~~~~~~~~-----------~~~~~~~~~~~s~~~~~l~~g~~ 444 (552)
.|.++++.+..+... ....+..-++++|+++.|++.+.
T Consensus 206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 999999998888643 12224444799998766666554
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=9.7e-06 Score=77.99 Aligned_cols=218 Identities=11% Similarity=0.096 Sum_probs=130.8
Q ss_pred eEEEEEc---CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccc
Q 008820 255 VTGLAVG---GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPL 331 (552)
Q Consensus 255 V~~l~~s---~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 331 (552)
..+.+|+ +..+++...++.|..||..+++.. .+. ....+.++++.+++. ++++. . ..|.+||..++.... +
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~-l~v~~-~-~gl~~~d~~~g~~~~-~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSK-QLIAS-D-DGLFLRDTATGVLTL-H 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTE-EEEEE-T-TEEEEEETTTCCEEE-E
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCe-EEEEE-C-CCEEEEECCCCcEEE-E
Confidence 4566776 456667777889999999887653 333 356799999999765 44433 3 449999987654221 1
Q ss_pred cccccCCCceeeeEEEEeeCCCEEEEeeC------CCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEE-EEeCCC
Q 008820 332 KKWNEEKDWRYSGIHALTTSGRYLYTGSG------DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLY-SGSRDG 402 (552)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~-s~~~dg 402 (552)
.............-..++++|+.+++... .+.|..+| +++... +..+......++|+ ++ .++ +.+.++
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 11111111122233467788886555432 24566666 455433 22233456789998 44 454 445678
Q ss_pred cEEEEECC--CC-cee--EEEe-cCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC-cceeeeecccceEEEEEe---
Q 008820 403 TIRLWSLS--DH-SLL--TVLE-EDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND-KFMKSMQTHKGSVFAVFL--- 472 (552)
Q Consensus 403 ~i~iwd~~--~~-~~~--~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~h~~~v~~v~~--- 472 (552)
.|.+||+. ++ +.. ..+. ..........++++++|++.++...++.|.+||.. +.+..+..+...+.+++|
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~~~~~~~~af~g~ 281 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGP 281 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEEST
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEECCCCCcEEEEEecC
Confidence 99999986 55 321 1221 11111223346889999887777777899999964 345566666667888876
Q ss_pred cCCEEEEEe
Q 008820 473 EGKWLFTGG 481 (552)
Q Consensus 473 ~~~~l~sgs 481 (552)
+++.|+.++
T Consensus 282 d~~~L~vt~ 290 (326)
T 2ghs_A 282 DASRLLVTS 290 (326)
T ss_dssp TSCEEEEEE
T ss_pred CCCEEEEEe
Confidence 445555444
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.2e-06 Score=84.77 Aligned_cols=250 Identities=12% Similarity=0.071 Sum_probs=156.6
Q ss_pred CCCeEEEEEeecCccceEEEEEc--CCEEEEEe----------CCCcEEEEeCCCCeEEEEEeCC-------CCCeEEEE
Q 008820 239 SKGNVKFKDLQGHRDCVTGLAVG--GGFLFSSS----------FDKSIHVWSLKDFSHVHTFKGH-------DHKVMAVV 299 (552)
Q Consensus 239 ~~~~~~~~~l~~H~~~V~~l~~s--~~~l~s~s----------~dg~I~iwd~~~~~~~~~~~~h-------~~~v~~v~ 299 (552)
......+.++.--..+ .++++ +++++.+. .++.|.++|..+++.+.++.-. ......++
T Consensus 106 ~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~ 183 (426)
T 3c75_H 106 GSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNA 183 (426)
T ss_dssp TTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSE
T ss_pred CCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEE
Confidence 3333445555544455 78998 77777775 4678999999999999887532 12346788
Q ss_pred EecCCCCEEEEEcC-CCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCC-CEEEEeeCCCcEEEEECCCCceeEE
Q 008820 300 YVDEDQPLCISGDS-GGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSG-RYLYTGSGDRTIKAWSLLDGTLSCT 377 (552)
Q Consensus 300 ~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sgs~dg~i~iwd~~~~~~~~~ 377 (552)
++|++..++++... ++.|.+.|+.+.+....+... . ...+.+++ ..+++.+.||.+.+.+..+++....
T Consensus 184 ~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~---g------~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 184 LTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP---D------CYHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC---S------EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred EcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC---C------ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 99988866665543 689999999876544333321 1 12334443 4667777889988888866655532
Q ss_pred ----ecCCCCCe-EEEEEe--CCEEEEEeCCCcEEEEECCCCcee--EEEecC--C-------CCceEEEEEEcCCCCEE
Q 008820 378 ----MSGHKSAV-STLAVC--NGVLYSGSRDGTIRLWSLSDHSLL--TVLEED--S-------SGAVSSVLSLTAVQHTL 439 (552)
Q Consensus 378 ----~~~h~~~v-~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~--~-------~~~~~~~~~~s~~~~~l 439 (552)
+.....++ ..+.+. ++.++..+..+.+.+.|....... ..+... . ...... +.++++++.+
T Consensus 255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~-va~s~dg~rl 333 (426)
T 3c75_H 255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQ-TAYHRQSDRI 333 (426)
T ss_dssp ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSC-EEEEGGGTEE
T ss_pred eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCcee-eEEcCCCCEE
Confidence 21112221 123455 346666677899999998765422 111110 0 000111 5789998887
Q ss_pred EEEEC----------CCcEEEEeCC--cceeeeeccc-ceEEEEEecCC-EEEEEe-CCCeEEEEecCCCeeeeee
Q 008820 440 VVSHE----------SGSIKVWRND--KFMKSMQTHK-GSVFAVFLEGK-WLFTGG-WDKTVSVQELAGDEFEEDV 500 (552)
Q Consensus 440 ~~g~~----------dg~i~iwd~~--~~~~~~~~h~-~~v~~v~~~~~-~l~sgs-~dg~i~iwd~~~~~~~~~~ 500 (552)
++... ++.|.++|.. +.+..+.... ..-..+++|++ ++++.. .++.|.++|+.+.+....+
T Consensus 334 yVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 334 YLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 77643 3579999965 3455554322 22233445898 888888 5899999999998877665
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.75 E-value=8.2e-07 Score=86.29 Aligned_cols=257 Identities=12% Similarity=0.066 Sum_probs=147.9
Q ss_pred cceEEEEEc--CCEEEEEe--CCCcEEEEeCCCCeEEEEEe-------CCCCCeEEEEEecCCCCEEEEEcC-----CCc
Q 008820 253 DCVTGLAVG--GGFLFSSS--FDKSIHVWSLKDFSHVHTFK-------GHDHKVMAVVYVDEDQPLCISGDS-----GGG 316 (552)
Q Consensus 253 ~~V~~l~~s--~~~l~s~s--~dg~I~iwd~~~~~~~~~~~-------~h~~~v~~v~~~~~~~~~l~s~~~-----dg~ 316 (552)
..+..++++ |+.+++.. .++.++||.+.+++.. .+. .|-..+..+++.+++. ++++-.. ++.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCCe
Confidence 678899998 77877764 2343566665555532 221 2456899999988754 4444333 578
Q ss_pred EEEEeCCCCCCCcccccccc-CCCceeeeEEEEeeCCC-EEEEee---CCCcEEEEECCCCceeEEecCCCCCeE-EEEE
Q 008820 317 IFVWSFSFPLGHEPLKKWNE-EKDWRYSGIHALTTSGR-YLYTGS---GDRTIKAWSLLDGTLSCTMSGHKSAVS-TLAV 390 (552)
Q Consensus 317 i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~l~sgs---~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~ 390 (552)
|.+||+.+++....+..... ........-..+++++. .+++.. .++.|.+||+.+++....+.+|..... ...+
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 99999987653222211100 00001112235666544 445544 678999999998888777765532211 0222
Q ss_pred e-CC-EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCC-cEEEEeCCcc----------e
Q 008820 391 C-NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG-SIKVWRNDKF----------M 457 (552)
Q Consensus 391 ~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg-~i~iwd~~~~----------~ 457 (552)
. ++ .+.+.+.|++++.|.. .... ++++|+++.|+++..++ .++.++.... .
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~~---------------~~~g-ia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 238 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPHL---------------GVNG-IVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELG 238 (343)
T ss_dssp EETTEECBEECTTSCEECCCC---------------CEEE-EEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHH
T ss_pred eECCEEEEeccCCCceeceec---------------ccce-eEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhh
Confidence 2 34 5666778888766531 1233 69999999998887766 5555542110 0
Q ss_pred e--eeecccceE--EEEEecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-CeEE-EEeCCCeE
Q 008820 458 K--SMQTHKGSV--FAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-GKLF-VGCADRTV 531 (552)
Q Consensus 458 ~--~~~~h~~~v--~~v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~-s~s~Dg~v 531 (552)
. ...++.... .+++.+|..+++...++.|.+||..+++....... +......++++.+ +.|+ +.+..+.+
T Consensus 239 ~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~----~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 239 SKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD----EKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp TTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC----GGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred cceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC----CceecCCeeEECCCCcEEEEeCccccc
Confidence 0 111232233 33444888888888899999999955544332221 1134478889974 4444 44433333
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.1e-06 Score=75.35 Aligned_cols=186 Identities=15% Similarity=0.093 Sum_probs=130.1
Q ss_pred cCc--cceEEEEEc-CCEEEEEeCC--CcEEEEeCCCCeEEEEEeCCCCCe-EEEEEecCCCCEEEEEcCCCcEEEEeCC
Q 008820 250 GHR--DCVTGLAVG-GGFLFSSSFD--KSIHVWSLKDFSHVHTFKGHDHKV-MAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (552)
Q Consensus 250 ~H~--~~V~~l~~s-~~~l~s~s~d--g~I~iwd~~~~~~~~~~~~h~~~v-~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (552)
.|. .-...+.|+ +.++.+.+.+ ..|+++|+++++.+..+....... ..+++ .++.+....-.++.+.++|..
T Consensus 16 phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETT
T ss_pred CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEEeeCCEEEEEECC
Confidence 454 346789999 5555555554 489999999999999886543321 23443 356677777789999999998
Q ss_pred CCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCC-----CCeEEEEEeCCEEEEE
Q 008820 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHK-----SAVSTLAVCNGVLYSG 398 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~l~~~~~~l~s~ 398 (552)
+.+....+... ... ..++++++.|+.+..++.|.++|..+.+.+.++.-.. ..++.+.+.++.+++.
T Consensus 94 tl~~~~ti~~~--~~G------wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyan 165 (243)
T 3mbr_X 94 TLTPRARFRYP--GEG------WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLAN 165 (243)
T ss_dssp TTEEEEEEECS--SCC------CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred cCcEEEEEeCC--CCc------eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEE
Confidence 76544444321 111 2556788877777778999999999999888775321 3457788887766666
Q ss_pred e-CCCcEEEEECCCCceeEEEecC-----------CCCceEEEEEEcCCCCEEEEEECC
Q 008820 399 S-RDGTIRLWSLSDHSLLTVLEED-----------SSGAVSSVLSLTAVQHTLVVSHES 445 (552)
Q Consensus 399 ~-~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~~~~~~~s~~~~~l~~g~~d 445 (552)
. .+..|.+.|.++++.+..+... ....+..-++++|+++.|++.+..
T Consensus 166 vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 166 VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 5 5789999999999999888733 122344447999988777776653
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=9.7e-06 Score=77.99 Aligned_cols=213 Identities=10% Similarity=0.001 Sum_probs=126.9
Q ss_pred CeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCc
Q 008820 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT 373 (552)
Q Consensus 294 ~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~ 373 (552)
-..+.+|+|+++.++++...++.|..||..++... .+.... .. ....+.++++++++ +.+ .|.+||..+++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~~~~~--~v-~~i~~~~dg~l~v~-~~~-gl~~~d~~~g~ 120 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT----VHALPF--MG-SALAKISDSKQLIA-SDD-GLFLRDTATGV 120 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE----EEECSS--CE-EEEEEEETTEEEEE-ETT-EEEEEETTTCC
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE----EEECCC--cc-eEEEEeCCCeEEEE-ECC-CEEEEECCCCc
Confidence 34677899988888888888999999998764321 111111 11 22356778876665 444 49999998887
Q ss_pred eeEEecC----CCCCeEEEEEe-CCEEEEEeC-------CCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEE
Q 008820 374 LSCTMSG----HKSAVSTLAVC-NGVLYSGSR-------DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVV 441 (552)
Q Consensus 374 ~~~~~~~----h~~~v~~l~~~-~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 441 (552)
....... ....+.+++++ ++.++.++. .+.|..+| +++....... ... ...++++++++.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~--~~~-~~~i~~s~dg~~lyv 195 (326)
T 2ghs_A 121 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD--ISI-PNSICFSPDGTTGYF 195 (326)
T ss_dssp EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE--ESS-EEEEEECTTSCEEEE
T ss_pred EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC--Ccc-cCCeEEcCCCCEEEE
Confidence 6433221 12357888898 444444432 24566666 4543322221 112 233689999987765
Q ss_pred EE-CCCcEEEEeCC--cc--e---eee---ecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCccc
Q 008820 442 SH-ESGSIKVWRND--KF--M---KSM---QTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPC 508 (552)
Q Consensus 442 g~-~dg~i~iwd~~--~~--~---~~~---~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 508 (552)
+. .++.|.+||.. .. + ..+ .........+.+ +|.+.++...++.|.+||.. ++....+...
T Consensus 196 ~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~~----- 269 (326)
T 2ghs_A 196 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVP----- 269 (326)
T ss_dssp EETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECS-----
T ss_pred EECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEECC-----
Confidence 54 56889999963 21 1 112 222344556665 67777766667899999985 4333333221
Q ss_pred CcceEEEEEe-CC--eEEEEe
Q 008820 509 GSVITALLYW-QG--KLFVGC 526 (552)
Q Consensus 509 ~~~v~~l~~~-~~--~l~s~s 526 (552)
...+.+++|+ ++ .|++++
T Consensus 270 ~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 270 GKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp CSBEEEEEEESTTSCEEEEEE
T ss_pred CCCcEEEEEecCCCCEEEEEe
Confidence 3358899997 43 455544
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=7.3e-06 Score=75.29 Aligned_cols=192 Identities=15% Similarity=0.066 Sum_probs=133.4
Q ss_pred ceEEEEEcC-CEEEEEeC---CCcEEEEeCCCCeEEEEEeCCCC-CeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCC
Q 008820 254 CVTGLAVGG-GFLFSSSF---DKSIHVWSLKDFSHVHTFKGHDH-KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328 (552)
Q Consensus 254 ~V~~l~~s~-~~l~s~s~---dg~I~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 328 (552)
....++|++ ..|+.++. ++.|++.|+.+++.+.++.-... ....+++. ++.+.++.-.++.+.++|..+.+..
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 367899983 56665543 57999999999999988763222 22345554 5567777778999999999876544
Q ss_pred ccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCC-----CCeEEEEEeCCEEEEEe-CCC
Q 008820 329 EPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHK-----SAVSTLAVCNGVLYSGS-RDG 402 (552)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~l~~~~~~l~s~~-~dg 402 (552)
..+..- .... ..++++++.++++..++.|.++|..+.+.+..+.-.. ...+.+.|.++.+++.. .++
T Consensus 100 ~~i~~g-~~~g------~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~ 172 (266)
T 2iwa_A 100 KNFTHQ-MKDG------WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTD 172 (266)
T ss_dssp EEEECC-SSSC------CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSS
T ss_pred EEEECC-CCCe------EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCC
Confidence 433221 1111 2477888877777778999999999998888775321 23678888877666655 578
Q ss_pred cEEEEECCCCceeEEEecCC-----------CCceEEEEEEcCCCCEEEE-EECCCcEEEEeCC
Q 008820 403 TIRLWSLSDHSLLTVLEEDS-----------SGAVSSVLSLTAVQHTLVV-SHESGSIKVWRND 454 (552)
Q Consensus 403 ~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~~~~s~~~~~l~~-g~~dg~i~iwd~~ 454 (552)
.|.+.|..+++.+..+.... ......-++++++++.+++ +...+.++..++.
T Consensus 173 ~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 173 CIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp EEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred eEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 99999999999998887531 1123344799999875555 4467788888754
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=0.00015 Score=78.81 Aligned_cols=280 Identities=9% Similarity=0.121 Sum_probs=167.0
Q ss_pred ccceEEEEEc-CCEEEEEeCCCcEEEEeCCCCeEEEEEeC-------CCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC
Q 008820 252 RDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKG-------HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (552)
Q Consensus 252 ~~~V~~l~~s-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-------h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (552)
...|.++... ...+..|+.++-+.+||..+++....... ....|.++...+++. +..|+.+ -|.+||..
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lWigt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNR--LWIGTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSC--EEEEESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCC--EEEEeCC-hhheEcCC
Confidence 4568888877 66667777655599999887665433221 135688888766554 3445555 68889876
Q ss_pred CCCCCccccccccCCCceeeeEEEEeeCCC-EEEEeeCCCcEEEEECCCCceeEEec------CCCCCeEEEEEe-CCEE
Q 008820 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTMS------GHKSAVSTLAVC-NGVL 395 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~------~h~~~v~~l~~~-~~~l 395 (552)
+....................+.++..|.+ .+..|+.++-|..|+..++....... -....|.++... ++.|
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l 370 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL 370 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE
Confidence 542211110000001111123455555433 57778887889999876554322111 023568898887 6688
Q ss_pred EEEeCCCcEEEEECCCCceeEEEecC-------CCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc-ceeeee-----c
Q 008820 396 YSGSRDGTIRLWSLSDHSLLTVLEED-------SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK-FMKSMQ-----T 462 (552)
Q Consensus 396 ~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~-~~~~~~-----~ 462 (552)
..|+.++-|..||..+++........ ....+.+ +...++++.|.+|+.++-|..||..+ ....+. .
T Consensus 371 WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~-i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l 449 (795)
T 4a2l_A 371 WIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKA-VYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQL 449 (795)
T ss_dssp EEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEE-EEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCC
T ss_pred EEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEE-EEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCc
Confidence 88999988999998876644322111 1123333 56677787577788877899999653 233332 2
Q ss_pred ccceEEEEEec-CCEEEEEeCCCeEEEEecCCCeeeeeeccC-CCcccCcceEEEEEe-CCeEEEEeCCCeEEEEEec
Q 008820 463 HKGSVFAVFLE-GKWLFTGGWDKTVSVQELAGDEFEEDVIPT-GAIPCGSVITALLYW-QGKLFVGCADRTVKIALCN 537 (552)
Q Consensus 463 h~~~v~~v~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~v~~l~~~-~~~l~s~s~Dg~v~iw~~~ 537 (552)
+...|.++..+ ...|..|+. +.+.+||..+++........ ........|.++... ++.+..|+. +-|..|+..
T Consensus 450 ~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~ 525 (795)
T 4a2l_A 450 VNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQE 525 (795)
T ss_dssp SCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEE
T ss_pred CCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCC
Confidence 34578888773 234555555 45888998877554332210 001113568888877 567888887 557778765
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=9.9e-06 Score=84.16 Aligned_cols=267 Identities=14% Similarity=0.115 Sum_probs=157.9
Q ss_pred eEEEeeC-CCeEEEEEeecCccc-----------eEEEEE--cCCE----EEEEeCCCcEEEEeCCCCeEEEEEeCCCC-
Q 008820 233 DLVNGLS-KGNVKFKDLQGHRDC-----------VTGLAV--GGGF----LFSSSFDKSIHVWSLKDFSHVHTFKGHDH- 293 (552)
Q Consensus 233 ~~~~~~~-~~~~~~~~l~~H~~~-----------V~~l~~--s~~~----l~s~s~dg~I~iwd~~~~~~~~~~~~h~~- 293 (552)
.+..... .....+|++...... ...+++ .+.. ++.++.|+.|..+|..+|+.+........
T Consensus 74 ~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~ 153 (599)
T 1w6s_A 74 NTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIK 153 (599)
T ss_dssp CEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGG
T ss_pred EEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCC
Confidence 3444433 344557776543221 133566 5444 88888999999999999999988764321
Q ss_pred ---CeEE-EEEecCCCCEEEEEc------CCCcEEEEeCCCCCCCccccccccCC-------------------------
Q 008820 294 ---KVMA-VVYVDEDQPLCISGD------SGGGIFVWSFSFPLGHEPLKKWNEEK------------------------- 338 (552)
Q Consensus 294 ---~v~~-v~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~------------------------- 338 (552)
.+.+ .... ++ .++.++ .+|.|+.+|..+++............
T Consensus 154 ~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw 230 (599)
T 1w6s_A 154 VGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTW 230 (599)
T ss_dssp GTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTS
T ss_pred ccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccC
Confidence 1111 1111 33 344444 38999999999876543322211000
Q ss_pred --------CceeeeEEEEeeCCCEEEEeeCC----------------CcEEEEECCCCceeEEecCCC----------CC
Q 008820 339 --------DWRYSGIHALTTSGRYLYTGSGD----------------RTIKAWSLLDGTLSCTMSGHK----------SA 384 (552)
Q Consensus 339 --------~~~~~~~~~~~~~~~~l~sgs~d----------------g~i~iwd~~~~~~~~~~~~h~----------~~ 384 (552)
....-...++.+....++.++.+ +.|..+|.++|+.+..++... .+
T Consensus 231 ~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p 310 (599)
T 1w6s_A 231 EGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVM 310 (599)
T ss_dssp STTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCC
T ss_pred CCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCcc
Confidence 00000112445566677777655 379999999999998875422 12
Q ss_pred eEEEEEe--CC----EEEEEeCCCcEEEEECCCCceeEEEecCC-----------CCc----------------------
Q 008820 385 VSTLAVC--NG----VLYSGSRDGTIRLWSLSDHSLLTVLEEDS-----------SGA---------------------- 425 (552)
Q Consensus 385 v~~l~~~--~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~---------------------- 425 (552)
+. +... ++ .++.++.+|.++++|.++|+.+....... .+.
T Consensus 311 ~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~ 389 (599)
T 1w6s_A 311 ML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSA 389 (599)
T ss_dssp EE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCT
T ss_pred EE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCc
Confidence 22 2221 23 57778899999999999999988765321 000
Q ss_pred ----eEEEEEEcCCCCEEEEEE---------------------------------------CCCcEEEEeCCcceeeeec
Q 008820 426 ----VSSVLSLTAVQHTLVVSH---------------------------------------ESGSIKVWRNDKFMKSMQT 462 (552)
Q Consensus 426 ----~~~~~~~s~~~~~l~~g~---------------------------------------~dg~i~iwd~~~~~~~~~~ 462 (552)
....++++|+..++++.. .+|.|..||..+....++.
T Consensus 390 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~ 469 (599)
T 1w6s_A 390 MGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEK 469 (599)
T ss_dssp TCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEE
T ss_pred ccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEe
Confidence 001135667666665532 2356777775433222211
Q ss_pred -ccceEE--EEEecCCEEEEEeCCCeEEEEecCCCeeeeeeccC
Q 008820 463 -HKGSVF--AVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPT 503 (552)
Q Consensus 463 -h~~~v~--~v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~ 503 (552)
+..+.. .+...+..++.++.||.++.||.++++........
T Consensus 470 ~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 470 MERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp EESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence 111111 13346788888999999999999999988876544
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=2.3e-06 Score=83.14 Aligned_cols=245 Identities=11% Similarity=0.036 Sum_probs=150.5
Q ss_pred CCCeEEEEEeecCccceEEEEEc--CCEEEEEe----------CCCcEEEEeCCCCeEEEEEeCC-------CCCeEEEE
Q 008820 239 SKGNVKFKDLQGHRDCVTGLAVG--GGFLFSSS----------FDKSIHVWSLKDFSHVHTFKGH-------DHKVMAVV 299 (552)
Q Consensus 239 ~~~~~~~~~l~~H~~~V~~l~~s--~~~l~s~s----------~dg~I~iwd~~~~~~~~~~~~h-------~~~v~~v~ 299 (552)
.+....+.++..-..+ .+.++ +++++.+. .+++|.+||+.+++.+.++..+ ......++
T Consensus 53 ~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia 130 (368)
T 1mda_H 53 AGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIG 130 (368)
T ss_dssp TTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEE
T ss_pred CCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEE
Confidence 3444445556544456 69998 77777775 3788999999999999998644 12356889
Q ss_pred EecCCCCEEEEEcC-CCcEEE--EeCCCCCCCccccccccCCCceeeeEEEEeeCCC-EEEEeeCCCcEEEEECCC----
Q 008820 300 YVDEDQPLCISGDS-GGGIFV--WSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLD---- 371 (552)
Q Consensus 300 ~~~~~~~~l~s~~~-dg~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~dg~i~iwd~~~---- 371 (552)
++|++..++++... +..+.+ +|..+ +....... +..+.++++ .+++.+.||.+.+.|+.+
T Consensus 131 ~SpDGk~lyVan~~~~~~v~V~~iD~~t------v~~i~v~~------~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~ 198 (368)
T 1mda_H 131 NCASSACLLFFLFGSSAAAGLSVPGASD------DQLTKSAS------CFHIHPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp ECTTSSCEEEEECSSSCEEEEEETTTEE------EEEEECSS------CCCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred EcCCCCEEEEEccCCCCeEEEEEEchhh------ceEEECCC------ceEEccCCCeEEEEEcCCCCEEEEECcccccc
Confidence 99998877666544 467888 88875 11111110 012334443 566777889999999876
Q ss_pred -CceeEE----ecCCCCCeEEEEEe-CCEEEEEeCCCcEEEEECCCCc--eeEEEecCC-----CCceE---EEEEEcCC
Q 008820 372 -GTLSCT----MSGHKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHS--LLTVLEEDS-----SGAVS---SVLSLTAV 435 (552)
Q Consensus 372 -~~~~~~----~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~-----~~~~~---~~~~~s~~ 435 (552)
++.... +.-...+. ... ++.++..+. +.+.+.|..+.. .+..+.... .+... ..+.++++
T Consensus 199 ~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d 274 (368)
T 1mda_H 199 AGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN 274 (368)
T ss_dssp CEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred CCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC
Confidence 443311 11122333 233 456666666 999999997543 222221110 00000 11479999
Q ss_pred CCEEEEEEC-C--------CcEEEEeCCc--ceeeeecccceEEEEE--ecCC-EEEEEe-CCCeEEEEecCCCeeeeee
Q 008820 436 QHTLVVSHE-S--------GSIKVWRNDK--FMKSMQTHKGSVFAVF--LEGK-WLFTGG-WDKTVSVQELAGDEFEEDV 500 (552)
Q Consensus 436 ~~~l~~g~~-d--------g~i~iwd~~~--~~~~~~~h~~~v~~v~--~~~~-~l~sgs-~dg~i~iwd~~~~~~~~~~ 500 (552)
++.++++.. + +.+.++|..+ .+..+.... ....+. +||+ .+++.. .++.|.++|+.+.+....+
T Consensus 275 g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I 353 (368)
T 1mda_H 275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353 (368)
T ss_dssp TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred CCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEE
Confidence 998887643 2 3566999653 445554332 344444 4887 566666 5999999999998877665
Q ss_pred cc
Q 008820 501 IP 502 (552)
Q Consensus 501 ~~ 502 (552)
..
T Consensus 354 ~v 355 (368)
T 1mda_H 354 EL 355 (368)
T ss_dssp CC
T ss_pred EC
Confidence 43
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.1e-06 Score=81.86 Aligned_cols=228 Identities=14% Similarity=0.167 Sum_probs=133.7
Q ss_pred EEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCc
Q 008820 284 HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT 363 (552)
Q Consensus 284 ~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~ 363 (552)
.+..+..........+|+++++.++++...++.|..|+.. +. . ..+..... .....++.++|+++++...++.
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~---~~~~~~~~--~~~gl~~d~dG~l~v~~~~~~~ 108 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-V---DVLLDATA--FTNGNAVDAQQRLVHCEHGRRA 108 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-E---EEEEESCS--CEEEEEECTTSCEEEEETTTTE
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-E---EEEeCCCC--ccceeeECCCCCEEEEECCCCE
Confidence 3444555556778899999888788999999999999874 22 1 11111111 1223467788886666556678
Q ss_pred EEEEECCCCceeEEec---C-CCCCeEEEEEe-CCEEEE-----EeC-------------CCcEEEEECCCCceeEEEec
Q 008820 364 IKAWSLLDGTLSCTMS---G-HKSAVSTLAVC-NGVLYS-----GSR-------------DGTIRLWSLSDHSLLTVLEE 420 (552)
Q Consensus 364 i~iwd~~~~~~~~~~~---~-h~~~v~~l~~~-~~~l~s-----~~~-------------dg~i~iwd~~~~~~~~~~~~ 420 (552)
|..||.. ++...... + ....+.+++++ ++.++. |.. .+.|..+|..+++..... .
T Consensus 109 v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~ 186 (305)
T 3dr2_A 109 ITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D 186 (305)
T ss_dssp EEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E
T ss_pred EEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c
Confidence 9999985 55432221 1 11346678888 454444 322 356888888777654433 1
Q ss_pred CCCCceEEEEEEcCCCCEEEEEECC------CcEEEEeCCcc-e---eee-ecccceEEEEE--ecCCEEEEEeCCCeEE
Q 008820 421 DSSGAVSSVLSLTAVQHTLVVSHES------GSIKVWRNDKF-M---KSM-QTHKGSVFAVF--LEGKWLFTGGWDKTVS 487 (552)
Q Consensus 421 ~~~~~~~~~~~~s~~~~~l~~g~~d------g~i~iwd~~~~-~---~~~-~~h~~~v~~v~--~~~~~l~sgs~dg~i~ 487 (552)
...... ++++|+++.|+++... +.|++|+.... + ..+ .........+. .+|+ |.+++.+ .|.
T Consensus 187 --~~~p~g-l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~ 261 (305)
T 3dr2_A 187 --LDHPNG-LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVC 261 (305)
T ss_dssp --ESSEEE-EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEE
T ss_pred --CCCCcc-eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEE
Confidence 122233 6899999988887765 68999985421 1 111 11111222333 4677 4444444 599
Q ss_pred EEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEEeCCCeEE
Q 008820 488 VQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGCADRTVK 532 (552)
Q Consensus 488 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~Dg~v~ 532 (552)
+|+..+. ....+... ..+.+++|++ +.|+.++.++..+
T Consensus 262 ~~~~~g~-~~~~~~~~------~~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 262 VFDSDGQ-LLGHIPTP------GTASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp EECTTSC-EEEEEECS------SCCCEEEECTTSCEEEEEETTEEEE
T ss_pred EECCCCC-EEEEEECC------CceeEEEEeCCCCEEEEEcCCeEEE
Confidence 9998644 33333221 1367788874 3577777764333
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=0.00017 Score=66.90 Aligned_cols=231 Identities=14% Similarity=0.050 Sum_probs=136.4
Q ss_pred CEEEEEeCCCcEEEEeCCCCeE-----EEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccC
Q 008820 263 GFLFSSSFDKSIHVWSLKDFSH-----VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEE 337 (552)
Q Consensus 263 ~~l~s~s~dg~I~iwd~~~~~~-----~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 337 (552)
.+|+.+.. +.|+.++++.... ...+......+..++|.++++.++++-..++.|..++.+........ ...
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~---~~~ 77 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII---RQD 77 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE---CTT
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE---ECC
Confidence 45555554 4788888765432 11222223457899999888878888888899999998754321111 111
Q ss_pred CCceeeeEEEEeeCCCEE-EEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeC---CCcEEEEECCC
Q 008820 338 KDWRYSGIHALTTSGRYL-YTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSR---DGTIRLWSLSD 411 (552)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~---dg~i~iwd~~~ 411 (552)
.....-.++.+++..+ ++-...+.|.+++.+.................++++ ++.|+.+.. .+.|..+++..
T Consensus 78 --~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 78 --LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp --CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred --CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence 0111234667765544 444556889999986443322222222456889998 356665554 36888888764
Q ss_pred CceeEEEecCCCCceEEEEEEcCCCCEEEEEE-CCCcEEEEeCCcc-eeeeecccceEEEEEecCCEEEEEe-CCCeEEE
Q 008820 412 HSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRNDKF-MKSMQTHKGSVFAVFLEGKWLFTGG-WDKTVSV 488 (552)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~-~~~~~~h~~~v~~v~~~~~~l~sgs-~dg~i~i 488 (552)
. ....+....... ..-+++++++..|+.+. ..+.|..+|.... ...+.........+++++..|+.+. ..+.|..
T Consensus 156 ~-~~~~~~~~~~~~-P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~ 233 (267)
T 1npe_A 156 T-NRRILAQDNLGL-PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIA 233 (267)
T ss_dssp C-CCEEEECTTCSC-EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEE
T ss_pred C-CcEEEEECCCCC-CcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEeCCEEEEEECCCCeEEE
Confidence 3 333332221222 33378999877666555 4678999997532 1112111223356667667666665 4589999
Q ss_pred EecCCCeeeeeec
Q 008820 489 QELAGDEFEEDVI 501 (552)
Q Consensus 489 wd~~~~~~~~~~~ 501 (552)
+|..+++......
T Consensus 234 ~d~~~g~~~~~i~ 246 (267)
T 1npe_A 234 MDLAISKEMDTFH 246 (267)
T ss_dssp EETTTTEEEEEEC
T ss_pred EeCCCCCceEEEc
Confidence 9998887665543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=0.00025 Score=77.14 Aligned_cols=275 Identities=12% Similarity=0.163 Sum_probs=165.4
Q ss_pred eEEEEEc-CCEEEEEeCCCcEEEEeCCCCeEEEEE-eCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcccc
Q 008820 255 VTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTF-KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLK 332 (552)
Q Consensus 255 V~~l~~s-~~~l~s~s~dg~I~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 332 (552)
|.++... ...+..++.++-|..||..+++..... ..+...|.++...+++. +..++.++.+..||..+........
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~--lwigt~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR--IWVATEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE--EEEEEBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC--EEEEECCCCeEEEeCCCCeEEEeec
Confidence 8888887 666777777656889998776654321 12346788887766443 4555555568889876532211110
Q ss_pred ccccCCCceeeeEEEEeeCC-CEEEEeeCCCcEEEEECCCCceeEEecC-------CCCCeEEEEEe-CCEEEEEeCCCc
Q 008820 333 KWNEEKDWRYSGIHALTTSG-RYLYTGSGDRTIKAWSLLDGTLSCTMSG-------HKSAVSTLAVC-NGVLYSGSRDGT 403 (552)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~l~~~-~~~l~s~~~dg~ 403 (552)
............+.++..+. ..+..|+.+ -|.+||..+++....... ....|.++... ++.+..|+.++-
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~G 331 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGG 331 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSC
T ss_pred CCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCC
Confidence 00000011112344555542 256666666 489999877765433211 23568899888 668888999899
Q ss_pred EEEEECCCCceeEEEecC------CCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc-ceeeee---------cccceE
Q 008820 404 IRLWSLSDHSLLTVLEED------SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK-FMKSMQ---------THKGSV 467 (552)
Q Consensus 404 i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~-~~~~~~---------~h~~~v 467 (552)
|..||..++... .+... ....+.+ +...++|+ |..|+.++-|..||..+ ....+. .....|
T Consensus 332 l~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~-i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v 408 (795)
T 4a2l_A 332 LNYYHPIRNRFK-NIRNIPYKNSLSDNVVSC-IVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNI 408 (795)
T ss_dssp EEEECGGGGSSE-EECCCTTSSSCSCSSEEE-EEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCE
T ss_pred eEEeCCCcccce-EEcCCCCCCCCCCCeeEE-EEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccE
Confidence 999997665432 22211 1122333 45666665 66688887899998653 222221 123568
Q ss_pred EEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEe-CCeEEEEeCCCeEEEEEec
Q 008820 468 FAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QGKLFVGCADRTVKIALCN 537 (552)
Q Consensus 468 ~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~Dg~v~iw~~~ 537 (552)
.++.. ++..|..|+.++-|..||..+++.......... .....|.++... ++.|..|+.+ -+.+|+..
T Consensus 409 ~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~-l~~~~v~~i~~d~~g~lwigt~~-Gl~~~~~~ 479 (795)
T 4a2l_A 409 KAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQ-LVNENVYAILPDGEGNLWLGTLS-ALVRFNPE 479 (795)
T ss_dssp EEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSC-CSCSCEEEEEECSSSCEEEEESS-CEEEEETT
T ss_pred EEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCC-cCCCeeEEEEECCCCCEEEEecC-ceeEEeCC
Confidence 88876 455478888888899999987765443221111 124568888877 5678888874 47777754
|
| >3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=8.2e-09 Score=98.42 Aligned_cols=83 Identities=17% Similarity=0.209 Sum_probs=49.9
Q ss_pred ccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHh
Q 008820 65 FSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQ 143 (552)
Q Consensus 65 ~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 143 (552)
..++.++|||||||+||||+||+ ||.......+........ .. .... .+.........++.+++.+
T Consensus 173 ~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~----~~-~~~~--------~~~~~~~~~~~~~~~li~~ 239 (299)
T 3m2w_A 173 EKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRI----RM-GQYE--------FPNPEWSEVSEEVKMLIRN 239 (299)
T ss_dssp CGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CCSCCSS----CT-TCCS--------SCHHHHTTSCHHHHHHHHH
T ss_pred ccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHHHHHHH----hh-cccc--------CCchhcccCCHHHHHHHHH
Confidence 45668999999999999999999 996543321100000000 00 0000 0111112234458999999
Q ss_pred hcccCCCCCcchhhHHH
Q 008820 144 CLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 144 ~l~~~p~~R~~~~~~~~ 160 (552)
||+.+|.+||++.++.+
T Consensus 240 ~l~~dP~~Rps~~e~l~ 256 (299)
T 3m2w_A 240 LLKTEPTQRMTITEFMN 256 (299)
T ss_dssp HTCSSTTTSCCHHHHHT
T ss_pred HcccChhhCCCHHHHhc
Confidence 99999999999887765
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.56 E-value=0.00017 Score=70.67 Aligned_cols=190 Identities=14% Similarity=0.111 Sum_probs=119.7
Q ss_pred cCCCCEEEEEcCCCcEEEEeCCCC-CCCccccccc-----cCCCceeeeEEEEeeCCCEEEEeeCC------CcEEEEEC
Q 008820 302 DEDQPLCISGDSGGGIFVWSFSFP-LGHEPLKKWN-----EEKDWRYSGIHALTTSGRYLYTGSGD------RTIKAWSL 369 (552)
Q Consensus 302 ~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~sgs~d------g~i~iwd~ 369 (552)
++...+++++-.++.|.++|+.+. ...+..+... ........--..+.|++ .++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 667778888999999999999643 2233333221 00011111122456888 77776655 78999999
Q ss_pred CCCceeEEecCCCC---CeEEEEEe--CCEEEEEe-------------------CCCcEEEEECCCCceeEEEecCCCCc
Q 008820 370 LDGTLSCTMSGHKS---AVSTLAVC--NGVLYSGS-------------------RDGTIRLWSLSDHSLLTVLEEDSSGA 425 (552)
Q Consensus 370 ~~~~~~~~~~~h~~---~v~~l~~~--~~~l~s~~-------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 425 (552)
++++.+.++..... --..+-|+ .+.+++.. .+.+|.+||+.+++.+.++.....+.
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99999998863222 23456677 34666664 37899999999998888887642222
Q ss_pred eEEEE--EEcCCCCEEEEEEC------CCcEEEEeCCc----ceeee--e------------------cccceEEEEEec
Q 008820 426 VSSVL--SLTAVQHTLVVSHE------SGSIKVWRNDK----FMKSM--Q------------------THKGSVFAVFLE 473 (552)
Q Consensus 426 ~~~~~--~~s~~~~~l~~g~~------dg~i~iwd~~~----~~~~~--~------------------~h~~~v~~v~~~ 473 (552)
...-+ .++|+++++++++. +++|.+|.... ..+.+ . +....-..+++|
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 22223 35999999888874 56777654211 01110 0 011112335669
Q ss_pred CCEEEEEeC-CCeEEEEecC
Q 008820 474 GKWLFTGGW-DKTVSVQELA 492 (552)
Q Consensus 474 ~~~l~sgs~-dg~i~iwd~~ 492 (552)
|++|+++.. .+.|.+||+.
T Consensus 332 GrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp SCEEEEEETTTTEEEEEECS
T ss_pred CCEEEEEeCCCCEEEEEEec
Confidence 999988876 6899999986
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.9e-05 Score=76.08 Aligned_cols=215 Identities=11% Similarity=0.098 Sum_probs=133.0
Q ss_pred CEEEEEeCCCcEEEEeCCCC----eEEEEEe-------CCCCCeEEEEEecCCCCEEEEEcCC------CcEEEEeCCCC
Q 008820 263 GFLFSSSFDKSIHVWSLKDF----SHVHTFK-------GHDHKVMAVVYVDEDQPLCISGDSG------GGIFVWSFSFP 325 (552)
Q Consensus 263 ~~l~s~s~dg~I~iwd~~~~----~~~~~~~-------~h~~~v~~v~~~~~~~~~l~s~~~d------g~i~vwd~~~~ 325 (552)
..++++..+++|.|+|+.+. +..+++. .....-..+...|++ +++++..+ |.|.+.|..+.
T Consensus 97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~ 174 (462)
T 2ece_A 97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSF 174 (462)
T ss_dssp EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTC
T ss_pred EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCC
Confidence 34566777899999999755 6777773 112245667778877 66666555 78999998876
Q ss_pred CCCccccccccCCCceeeeEEEEeeCCCEEEEee-------------------CCCcEEEEECCCCceeEEecCC--CCC
Q 008820 326 LGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS-------------------GDRTIKAWSLLDGTLSCTMSGH--KSA 384 (552)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs-------------------~dg~i~iwd~~~~~~~~~~~~h--~~~ 384 (552)
+.......-........ -..++|+++.+++.. .+.+|.+||+.+++.+.++..- ...
T Consensus 175 ~v~~~~~~~~~~~~~~Y--d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~ 252 (462)
T 2ece_A 175 EPLGKWEIDRGDQYLAY--DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM 252 (462)
T ss_dssp CEEEECCSBCTTCCCCC--CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred eEEEEEccCCCCccccc--eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence 54433321111111111 135688999888874 3689999999999888887642 123
Q ss_pred eEEEEE--e-C-CEEEEEe------CCCcEEEEECCCCce--eEEEecCCC----------------CceEEEEEEcCCC
Q 008820 385 VSTLAV--C-N-GVLYSGS------RDGTIRLWSLSDHSL--LTVLEEDSS----------------GAVSSVLSLTAVQ 436 (552)
Q Consensus 385 v~~l~~--~-~-~~l~s~~------~dg~i~iwd~~~~~~--~~~~~~~~~----------------~~~~~~~~~s~~~ 436 (552)
...+.| + + .++++++ .+++|.+|....++. .+.+..... +....-+.+++||
T Consensus 253 P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG 332 (462)
T 2ece_A 253 ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD 332 (462)
T ss_dssp EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS
T ss_pred cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC
Confidence 456666 5 3 3555544 677888877655432 122111100 1122336899999
Q ss_pred CEEEEEEC-CCcEEEEeCC-----cceeeeecc----------------cceEEEEEecCCEEEEEe
Q 008820 437 HTLVVSHE-SGSIKVWRND-----KFMKSMQTH----------------KGSVFAVFLEGKWLFTGG 481 (552)
Q Consensus 437 ~~l~~g~~-dg~i~iwd~~-----~~~~~~~~h----------------~~~v~~v~~~~~~l~sgs 481 (552)
++|+++.. .+.|.+||+. +.+..+... ...-..+++||++|+++.
T Consensus 333 rfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 333 KFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99988875 6899999964 222222211 123356677999999887
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=7.7e-05 Score=68.47 Aligned_cols=188 Identities=8% Similarity=-0.023 Sum_probs=124.4
Q ss_pred EEeeCCCEEEEeeC--CCcEEEEECCCCceeEEecCCC-CCeEEEEEeCCEEEEE-eCCCcEEEEECCCCceeEEEecCC
Q 008820 347 ALTTSGRYLYTGSG--DRTIKAWSLLDGTLSCTMSGHK-SAVSTLAVCNGVLYSG-SRDGTIRLWSLSDHSLLTVLEEDS 422 (552)
Q Consensus 347 ~~~~~~~~l~sgs~--dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~ 422 (552)
.+++++..+++.+. ++.|.++|+.+++.+..+.-.. .....+++.++.++.+ -.++.+.++|..+.+.+.++...
T Consensus 27 ~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g- 105 (266)
T 2iwa_A 27 VYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ- 105 (266)
T ss_dssp EECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC-
T ss_pred EEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC-
Confidence 56666544443332 5899999999999998875322 2334677777655544 46789999999999999988754
Q ss_pred CCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeeec--ccc---eEEEEEe-cCCEEEEEeCCCeEEEEecCCC
Q 008820 423 SGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQT--HKG---SVFAVFL-EGKWLFTGGWDKTVSVQELAGD 494 (552)
Q Consensus 423 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~--h~~---~v~~v~~-~~~~l~sgs~dg~i~iwd~~~~ 494 (552)
.+.- ..+++|++.++++..++.|.++|..+ ....+.- +.. ..+.+.+ ++...+....++.|.+.|..++
T Consensus 106 ~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg 182 (266)
T 2iwa_A 106 MKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDG 182 (266)
T ss_dssp SSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTC
T ss_pred CCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCC
Confidence 1111 24556788777777889999999654 3333332 111 2456666 5644444445789999999998
Q ss_pred eeeeeeccCC--------CcccCcceEEEEEeCC--e-EEEEeCCCeEEEEEecC
Q 008820 495 EFEEDVIPTG--------AIPCGSVITALLYWQG--K-LFVGCADRTVKIALCNR 538 (552)
Q Consensus 495 ~~~~~~~~~~--------~~~~~~~v~~l~~~~~--~-l~s~s~Dg~v~iw~~~~ 538 (552)
+....+...+ ..+.....+.++++++ + ++++...+.|..-++..
T Consensus 183 ~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 183 TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 8766554321 0111245789999953 4 66677889999988863
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 552 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-22 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-17 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-16 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-21 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-12 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 7e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.002 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-21 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-21 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-08 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-20 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-14 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-10 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-11 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-10 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 8e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-10 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 7e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.001 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 7e-09 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 7e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 7e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 7e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.003 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.002 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 8e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.002 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.003 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 5e-04 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 94.0 bits (232), Expect = 9e-22
Identities = 59/313 (18%), Positives = 101/313 (32%), Gaps = 37/313 (11%)
Query: 248 LQGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
L GHR VT + + S+S D +I VW + T KGH V + + +
Sbjct: 13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
L + ++ +G ++ + S D+TIK
Sbjct: 73 LLASC------SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 126
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAVCNG--VLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423
W + G T +GH+ V + ++ S S D T+R+W ++ L E
Sbjct: 127 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 186
Query: 424 GAVS------------------SVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTH 463
L+ +IK+W + ++ H
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246
Query: 464 KGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK 521
V V GK++ + DKT+ V + + T V + +
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR----CMKTLNAHEHFVTSLDFHKTAP 302
Query: 522 LFV-GCADRTVKI 533
V G D+TVK+
Sbjct: 303 YVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 80.9 bits (198), Expect = 2e-17
Identities = 47/207 (22%), Positives = 80/207 (38%), Gaps = 20/207 (9%)
Query: 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321
G + S+S DK+I +W ++ V TF GH V V ++D L S + + VW
Sbjct: 113 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP-NQDGTLIASCSNDQTVRVWV 171
Query: 322 FSFPLGHEPLK---------------KWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKA 366
+ L+ ++ + S G +L +GS D+TIK
Sbjct: 172 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 231
Query: 367 WSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSG 424
W + G T+ GH + V + + S + D T+R+W + + L
Sbjct: 232 WDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-AHEH 290
Query: 425 AVSSVLSLTAVQHTLVVSHESGSIKVW 451
V+S+ +V ++KVW
Sbjct: 291 FVTSL-DFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 77.9 bits (190), Expect = 2e-16
Identities = 34/183 (18%), Positives = 67/183 (36%), Gaps = 28/183 (15%)
Query: 248 LQGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAV------- 298
GHR+ V + G + S S D+++ VW + + H H V +
Sbjct: 139 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESS 198
Query: 299 ------------VYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIH 346
+ P +SG I +W S L +W
Sbjct: 199 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS---TGMCLMTLVGHDNWVRG--V 253
Query: 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTI 404
+ G+++ + + D+T++ W + T++ H+ V++L + +GS D T+
Sbjct: 254 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTV 313
Query: 405 RLW 407
++W
Sbjct: 314 KVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.7 bits (135), Expect = 2e-09
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 246 KDLQGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDE 303
L GH + V G+ GG F+ S + DK++ VW K+ + T H+H V ++ + +
Sbjct: 241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF-HK 299
Query: 304 DQPLCISGDSGGGIFVW 320
P ++G + VW
Sbjct: 300 TAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.9 bits (120), Expect = 1e-07
Identities = 38/231 (16%), Positives = 74/231 (32%), Gaps = 29/231 (12%)
Query: 332 KKWNEEKDWRYS------GIHALTTS--GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKS 383
K+W +Y+ + + + + S D TIK W G T+ GH
Sbjct: 1 KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD 60
Query: 384 AVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH 443
+V ++ + S + + + S +S+ +V +
Sbjct: 61 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120
Query: 444 ESGSIKVW--RNDKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDE---- 495
+IK+W + +K+ H+ V V +G + + D+TV V +A E
Sbjct: 121 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE 180
Query: 496 ------------FEEDVIPTGAIPCGSVITALLYWQGKLF-VGCADRTVKI 533
+ + + T G G D+T+K+
Sbjct: 181 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 231
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.4 bits (230), Expect = 1e-21
Identities = 51/289 (17%), Positives = 89/289 (30%), Gaps = 48/289 (16%)
Query: 244 KFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDE 303
+ V L + S D +I +W GH V+ + Y +
Sbjct: 7 RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER 66
Query: 304 DQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSG----------- 352
S + V + + + + +
Sbjct: 67 VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT 126
Query: 353 ----------------------RYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAV 390
+Y+ + SGDRTIK W+ T++GHK ++ L
Sbjct: 127 DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY 186
Query: 391 CNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKV 450
+ ++ SGS D TIRLW + + L V G V + +V G IKV
Sbjct: 187 RDRLVVSGSSDNTIRLWDIECGACLRV----LEGHEELVRCIRFDNKRIVSGAYDGKIKV 242
Query: 451 W-----------RNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSV 488
W ++++ H G VF + + + + D T+ +
Sbjct: 243 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILI 291
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.3 bits (157), Expect = 3e-12
Identities = 40/169 (23%), Positives = 59/169 (34%), Gaps = 19/169 (11%)
Query: 248 LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPL 307
L GHR V + ++ S+S D++I VW+ V T GH + + Y L
Sbjct: 134 LVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY---RDRL 190
Query: 308 CISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAW 367
+SG S I +W L+ E + +G+ D IK W
Sbjct: 191 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK-------RIVSGAYDGKIKVW 243
Query: 368 SLLDG---------TLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLW 407
L+ T+ H V L + S S D TI +W
Sbjct: 244 DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.9 bits (130), Expect = 7e-09
Identities = 44/185 (23%), Positives = 68/185 (36%), Gaps = 12/185 (6%)
Query: 272 KSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPL 331
+SI VW + + + + AV VD D +S I VW+ S E +
Sbjct: 115 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS---TCEFV 171
Query: 332 KKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC 391
+ N K I L R + +GS D TI+ W + G + GH+ V +
Sbjct: 172 RTLNGHKRG----IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD 227
Query: 392 NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDS-----SGAVSSVLSLTAVQHTLVVSHESG 446
N + SG+ DG I++W L V L + +V S
Sbjct: 228 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDD 287
Query: 447 SIKVW 451
+I +W
Sbjct: 288 TILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (101), Expect = 3e-05
Identities = 43/292 (14%), Positives = 89/292 (30%), Gaps = 46/292 (15%)
Query: 284 HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS-------------------- 323
+ V + D +SG I +W +
Sbjct: 4 SLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63
Query: 324 -------------FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLL 370
+ + + L + + T S DR+I W +
Sbjct: 64 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123
Query: 371 DGTLSCTM---SGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVS 427
T GH++AV+ + + + S S D TI++W+ S + L G
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN----GHKR 179
Query: 428 SVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKT 485
+ L +V +I++W ++ ++ H+ V + + K + +G +D
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGK 239
Query: 486 VSVQELAGDEFEEDVIPTGAIPC----GSVITALLYWQGKLFVGCADRTVKI 533
+ V +L T + + L + + ++ D T+ I
Sbjct: 240 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILI 291
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 0.002
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 240 KGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVW 277
G + + L H V L + SSS D +I +W
Sbjct: 255 AGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 93.6 bits (231), Expect = 2e-21
Identities = 46/290 (15%), Positives = 87/290 (30%), Gaps = 47/290 (16%)
Query: 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDE 303
+ L+GH + + G L S+S D + +W + VH VM Y
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 304 DQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSG------------------- 344
+ G + ++ +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 345 --------------------IHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSA 384
+L R +G+ D + K W + +G T +GH+S
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 385 VSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS 442
++ + +GS D T RL+ L L D+ + +S + L+
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 443 HESGSIKVW--RNDKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSV 488
++ + VW + H V + + +G + TG WD + +
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 93.3 bits (230), Expect = 3e-21
Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 10/151 (6%)
Query: 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321
S + D S +W +++ TF GH+ + A+ + + +G ++
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF-FPNGNAFATGSDDATCRLFD 254
Query: 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTS--GRYLYTGSGDRTIKAWSLLDGTLSCTMS 379
+ D GI +++ S GR L G D W L + ++
Sbjct: 255 L-----RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 380 GHKSAVSTLAVCNG--VLYSGSRDGTIRLWS 408
GH + VS L V + + +GS D +++W+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.6 bits (127), Expect = 3e-08
Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 8/124 (6%)
Query: 248 LQGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKV-MAVVYVDED 304
GH + + G + S D + ++ L+ + T+ + + V +
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 305 QPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTI 364
L ++G VW + + +T G + TGS D +
Sbjct: 282 GRLLLAGYDDFNCNVWDAL---KADRAGVLAGHDNRVSCL--GVTDDGMAVATGSWDSFL 336
Query: 365 KAWS 368
K W+
Sbjct: 337 KIWN 340
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.1 bits (219), Expect = 5e-20
Identities = 60/326 (18%), Positives = 113/326 (34%), Gaps = 42/326 (12%)
Query: 248 LQGHRDCV-TGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQP 306
L+GH D V T L G + S S D ++ VWS + T GH V + D
Sbjct: 12 LKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIII 71
Query: 307 LCISGDSGGGIFV------------------------------WSFSFPLGHEPLKKWNE 336
+ + + + +
Sbjct: 72 SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH 131
Query: 337 EKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLY 396
+ + + GR + +G+ D +K W T T+ GH + V +L +
Sbjct: 132 VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVV 191
Query: 397 SGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW----- 451
SGS D +IR+W + + + +G S + + LV + ++K+W
Sbjct: 192 SGSLDTSIRVWDVETGNCIHT----LTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG 247
Query: 452 RNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSV 511
+ + ++ H+ +V + ++ T D TV + +L EF +++ + G V
Sbjct: 248 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307
Query: 512 ITALLYWQGK--LFVGCADRTVKIAL 535
+ + K VG + T + L
Sbjct: 308 VWRIRASNTKLVCAVGSRNGTEETKL 333
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.9 bits (177), Expect = 1e-14
Identities = 40/176 (22%), Positives = 65/176 (36%), Gaps = 18/176 (10%)
Query: 246 KDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
LQGH + V L G + S S D SI VW ++ + +HT GH +
Sbjct: 171 HTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL---KD 227
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
+ +SG++ + +W + L+ N+ + + ++ T S D T+K
Sbjct: 228 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF----NKNFVITSSDDGTVK 283
Query: 366 AWSLLDGTLSCT-----MSGHKSAVSTLAVCNG--VLYSGSRDGT----IRLWSLS 410
W L G G V + N V GSR+GT + +
Sbjct: 284 LWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (137), Expect = 1e-09
Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 20/259 (7%)
Query: 277 WSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNE 336
W + KGHD V+ + + +SG + VWS + L+
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFCGN--RIVSGSDDNTLKVWSAV---TGKCLRTLVG 55
Query: 337 EKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLY 396
+ + + +GS DRT+K W+ G T+ GH S V + + +
Sbjct: 56 HTGG----VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 111
Query: 397 SGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW--RND 454
SGSRD T+R+W + L VL G V++V + +V +KVW +
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLM----GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 167
Query: 455 KFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITA 514
+ ++Q H V+++ +G + +G D ++ V ++ + S+ +
Sbjct: 168 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL-----TGHQSLTSG 222
Query: 515 LLYWQGKLFVGCADRTVKI 533
+ L G AD TVKI
Sbjct: 223 MELKDNILVSGNADSTVKI 241
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 81.8 bits (200), Expect = 3e-17
Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 23/170 (13%)
Query: 262 GGFLFSSSFDKSIHVWSLKD-------FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSG 314
G ++ + S D+++ VW + S + GH V +VV+ D +SG
Sbjct: 217 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF-TRDGQSVVSGSLD 275
Query: 315 GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIH-------ALTTSGRYLYTGSGDRTIKAW 367
+ +W+ K N H A T + Y+ +GS DR + W
Sbjct: 276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 335
Query: 368 SLLDGTLSCTMSGHKSAVSTLAVCNGV--------LYSGSRDGTIRLWSL 409
G + GH+++V ++AV NG +GS D R+W
Sbjct: 336 DKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.9 bits (164), Expect = 8e-13
Identities = 42/278 (15%), Positives = 88/278 (31%), Gaps = 37/278 (13%)
Query: 242 NVKFKDLQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVY 300
N+ + + G ++ + + + + + + +
Sbjct: 111 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLD 170
Query: 301 VDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG 360
+SG + +W L + S G+Y+ GS
Sbjct: 171 YFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD-----GKYIAAGSL 225
Query: 361 DRTIKAWSLLDGTLSCTM-------SGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSD 411
DR ++ W G L + +GHK +V ++ + SGS D +++LW+L +
Sbjct: 226 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 285
Query: 412 HSLLT-----------VLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMK 458
+ + V V SV + T ++ + + W ++ +
Sbjct: 286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSV-ATTQNDEYILSGSKDRGVLFWDKKSGNPLL 344
Query: 459 SMQTHKGSVFAVFL--------EGKWLFTGGWDKTVSV 488
+Q H+ SV +V + E TG D +
Sbjct: 345 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.2 bits (144), Expect = 3e-10
Identities = 39/200 (19%), Positives = 75/200 (37%), Gaps = 21/200 (10%)
Query: 273 SIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLK 332
++ +W L+ T D V + + + +G + VW E L
Sbjct: 186 TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI-AAGSLDRAVRVWDSETGFLVERLD 244
Query: 333 KWNEEKDWRYSGIHALTTS--GRYLYTGSGDRTIKAWSLLDG------------TLSCTM 378
NE ++++ + G+ + +GS DR++K W+L + T T
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304
Query: 379 SGHKSAVSTLAVCNG--VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSG----AVSSVLSL 432
GHK V ++A + SGS+D + W + L +L+ + AV++ SL
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 364
Query: 433 TAVQHTLVVSHESGSIKVWR 452
+ ++W+
Sbjct: 365 GPEYNVFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.1 bits (123), Expect = 1e-07
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 251 HRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYV-----DE 303
H+D V +A ++ S S D+ + W K + + +GH + V++V
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 366
Query: 304 DQPLCISGDSGGGIFVWSF 322
+ + +G +W +
Sbjct: 367 EYNVFATGSGDCKARIWKY 385
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.8 bits (153), Expect = 1e-11
Identities = 53/310 (17%), Positives = 99/310 (31%), Gaps = 34/310 (10%)
Query: 248 LQGHRDCV-TGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQP 306
L+GH V T L ++ + + DK I V+ + + GHD V A+ Y
Sbjct: 8 LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 67
Query: 307 LCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKA 366
+ SG + + +Y+ TGS D T+
Sbjct: 68 V-----SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122
Query: 367 WSLLDGTL-----------------------SCTMSGHKSAVSTLAVCNGVLYSGSRDGT 403
W L + + GH ++V T++ ++ SGS D T
Sbjct: 123 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT 182
Query: 404 IRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTH 463
+ +W ++ L +L + S++ + + I N + M ++Q H
Sbjct: 183 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 242
Query: 464 KGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLF 523
V + L K+L + D ++ + + T Y +
Sbjct: 243 TALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAI-----TTFYVSDNIL 297
Query: 524 VGCADRTVKI 533
V ++ I
Sbjct: 298 VSGSENQFNI 307
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 4e-06
Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 6/124 (4%)
Query: 377 TMSGHKSAVST-LAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVL----S 431
T+ GH ++V T L + + +G+ D IR++ + L L G V ++
Sbjct: 7 TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAHGG 65
Query: 432 LTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQEL 491
+ T K F T + + K++ TG D T+ V +L
Sbjct: 66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125
Query: 492 AGDE 495
+
Sbjct: 126 PKES 129
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.2 bits (97), Expect = 1e-04
Identities = 29/204 (14%), Positives = 65/204 (31%), Gaps = 10/204 (4%)
Query: 251 HRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCIS 310
H V ++ G + S S+D ++ VW + ++ GH ++ + +Y E + +
Sbjct: 160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA 219
Query: 311 GDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLL 370
+ L + R S + + +
Sbjct: 220 SMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF-------LVSAAADGSIRGWDAND 272
Query: 371 DGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVL 430
+ SA++T V + +L SGS + +++L L+ + + SV
Sbjct: 273 YSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVN 331
Query: 431 SLTAVQHTLVVSHESGSIKVWRND 454
+ + + G + D
Sbjct: 332 FKG--KTLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.6 bits (93), Expect = 3e-04
Identities = 9/64 (14%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 262 GGFLFSSSFDKSIHVWSLKDFSHVH-TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320
+ S + ++++L+ VH ++ +V + + + L + + G F+
Sbjct: 293 SDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNF--KGKTLVAAVEKDGQSFLE 350
Query: 321 SFSF 324
F
Sbjct: 351 ILDF 354
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 61.0 bits (146), Expect = 1e-10
Identities = 14/194 (7%), Positives = 39/194 (20%), Gaps = 14/194 (7%)
Query: 238 LSKGNVKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSH-------VHTFKG 290
+ + + D L+ S+ +
Sbjct: 166 MEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPL 225
Query: 291 HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYS-GIHALT 349
V ++ S + + + +
Sbjct: 226 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG 285
Query: 350 TSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRLW 407
Y + + + ++ K+ ++ L + + + DG I +
Sbjct: 286 EFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTF 341
Query: 408 SLSDHSLLTVLEED 421
L +E D
Sbjct: 342 PLEKPEDERTVETD 355
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 42.5 bits (98), Expect = 8e-05
Identities = 19/171 (11%), Positives = 45/171 (26%), Gaps = 18/171 (10%)
Query: 334 WNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSC-------TMSGHKSAVS 386
+ + + A + LY S + + S + + +
Sbjct: 172 FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPN 231
Query: 387 TLAVCN--GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQH-----TL 439
+ +G D S ++ SS+L + H
Sbjct: 232 PTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYY 291
Query: 440 VVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSV 488
+ E G + + D + + K ++ + L + K + D +
Sbjct: 292 QGAPEKGVLLKY--DVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYT 340
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 41.4 bits (95), Expect = 2e-04
Identities = 26/196 (13%), Positives = 56/196 (28%), Gaps = 15/196 (7%)
Query: 269 SFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIF---VWSFSFP 325
++IHV+ ++ + H D +S S V +FSF
Sbjct: 156 YVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFE 215
Query: 326 LGHEPLK---KWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAW-SLLDGTLSCTMSGH 381
+ +P + + +G Y R+ D + +
Sbjct: 216 VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS 275
Query: 382 KSAVSTLAVCNG--VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTL 439
S G + + + + V ++ + L+A + T+
Sbjct: 276 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV-----KNNLTDL-RLSADRKTV 329
Query: 440 VVSHESGSIKVWRNDK 455
+V + G I + +K
Sbjct: 330 MVRKDDGKIYTFPLEK 345
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.7 bits (145), Expect = 1e-10
Identities = 22/140 (15%), Positives = 40/140 (28%), Gaps = 7/140 (5%)
Query: 275 HVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKW 334
K + T V V + + I+ S I +
Sbjct: 188 QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG--EFLKYIE 245
Query: 335 NEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--- 391
++++ + + T D TI+ W + + K + V
Sbjct: 246 DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA 305
Query: 392 --NGVLYSGSRDGTIRLWSL 409
NG + S S DGT+ + L
Sbjct: 306 TGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.8 bits (101), Expect = 3e-05
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Query: 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKV--MAVVYVDEDQPLCISGDSGGGIFV 319
+ D +I VW + V + ++ V V IS G +
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322
Query: 320 W 320
+
Sbjct: 323 Y 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.4 bits (100), Expect = 4e-05
Identities = 24/213 (11%), Positives = 63/213 (29%), Gaps = 11/213 (5%)
Query: 249 QGHRDCVTGLAV----GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDED 304
Q ++ ++ + D S + + GH ++ A
Sbjct: 112 QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR 171
Query: 305 QPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTI 364
++ G + + + +++ + + SG ++ T DR I
Sbjct: 172 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD-VEFSPDSGEFVITVGSDRKI 230
Query: 365 KAWSLLDGTLSCTMSGHKSAVSTLAVC-----NGVLYSGSRDGTIRLWSLSDHSLLTVLE 419
+ G + + V + + D TIR+W ++ +
Sbjct: 231 SCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT 290
Query: 420 EDSSGAVSSVLSLTAVQHTLVVS-HESGSIKVW 451
D + + + A + ++S G++ +
Sbjct: 291 LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.7 bits (140), Expect = 5e-10
Identities = 36/321 (11%), Positives = 76/321 (23%), Gaps = 71/321 (22%)
Query: 248 LQGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHTFK---GHDHKVMAVVYVD 302
Q +D ++ + + L +S+D S+ V+ + + H ++ ++D
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66
Query: 303 EDQPLCISGDSGGGIFVWSF---------------------------------------- 322
G G I
Sbjct: 67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126
Query: 323 ----SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM 378
++ G +K N + I + T+ L G + ++ + L
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186
Query: 379 SGHKSAVSTLAVC------NGVLYSGSRDGTIRLWSLSDHSLLTVLEED----------- 421
+ S DG + + D +
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246
Query: 422 --SSGAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQT-HKGSVFAVFLEGKW 476
+ + + + L + G I W + K +K+ ++ SV +
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNI 306
Query: 477 LFTGGWDKTVSVQELAGDEFE 497
L D T E
Sbjct: 307 LCLATSDDTFKTNAAIDQTIE 327
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (91), Expect = 7e-04
Identities = 10/91 (10%), Positives = 23/91 (25%), Gaps = 4/91 (4%)
Query: 377 TMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEE--DSSGAVSSVLSL 432
K +S + + +L S DG++ ++ + L + + +
Sbjct: 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65
Query: 433 TAVQHTLVVSHESGSIKVWRNDKFMKSMQTH 463
+ V G I
Sbjct: 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQALT 96
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 0.001
Identities = 18/143 (12%), Positives = 41/143 (28%), Gaps = 26/143 (18%)
Query: 261 GGGFLFSSSFDKSIHVWSL---------------KDFSHVHTFKGHDHKVMAVVYVDEDQ 305
SS D + V + + V ++ +
Sbjct: 205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF-SPRH 263
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
+ S G I W+ + +K + + + + + S L + D T K
Sbjct: 264 KFLYTAGSDGIISCWNLQ---TRKKIKNFAKFNEDS---VVKIACSDNILCLATSDDTFK 317
Query: 366 AWSLLDGTLSCTMSGHKSAVSTL 388
+ +D T+ + S++ +
Sbjct: 318 TNAAIDQTI----ELNASSIYII 336
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (133), Expect = 4e-09
Identities = 19/145 (13%), Positives = 42/145 (28%), Gaps = 5/145 (3%)
Query: 269 SFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328
S D + D + ++ + + L S
Sbjct: 192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL 251
Query: 329 EPLKKWNEEKDWRYSGIHALTTS--GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVS 386
K + S + +L + G++ + D + AW G S S+V
Sbjct: 252 HVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVL 310
Query: 387 TLAVC--NGVLYSGSRDGTIRLWSL 409
+ + + + +GS D ++ +
Sbjct: 311 SCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (121), Expect = 1e-07
Identities = 29/291 (9%), Positives = 77/291 (26%), Gaps = 14/291 (4%)
Query: 250 GHRDCVTGLAV--GGGFLFSSSFDKSIHVWSLKDFSHVHT-----FKGHDHKVMAVVYVD 302
H + V + + +++ + VW + + D+ + + +
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 303 EDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR 362
+ L + G++ + Y+ + + + G+
Sbjct: 108 DGCTLIVGGEAS--TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165
Query: 363 TIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDS 422
+ ++ ++ L++G D T+R W L + L + S
Sbjct: 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS 225
Query: 423 SGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLFTGGW 482
+ S + V + DK+ + GKW + G
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK 285
Query: 483 DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKI 533
D ++ + ++ + + G D+ +
Sbjct: 286 DNLLNAWRTPYGASIFQSKESSSVLS----CDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (97), Expect = 1e-04
Identities = 8/60 (13%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321
G + S+ D ++ W + + V++ + D ++G V+
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCD-ISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 8e-04
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 391 CNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKV 450
C S +D + W + + +E S +V S ++ +V V
Sbjct: 276 CGKWFVSTGKDNLLNAWRTPYGASIFQSKE--SSSVLSC-DISVDDKYIVTGSGDKKATV 332
Query: 451 W 451
+
Sbjct: 333 Y 333
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.6 bits (132), Expect = 7e-09
Identities = 21/201 (10%), Positives = 52/201 (25%), Gaps = 41/201 (20%)
Query: 248 LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLK----DFSHVHTFKGHDHK--------V 295
+ H + ++ F S S D + VW K + ++ HK +
Sbjct: 10 GKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69
Query: 296 MAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALT------ 349
A+ + L + G + + + + + + H+
Sbjct: 70 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129
Query: 350 ----TSGRYLYTGSGDRTIKAWSLLDG------------------TLSCTMSGHKSAVST 387
L T W + ++
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189
Query: 388 LAVC-NGVLYSGSRDGTIRLW 407
+ + G++ +G +GT+++
Sbjct: 190 VDISERGLIATGFNNGTVQIS 210
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.6 bits (119), Expect = 3e-07
Identities = 29/204 (14%), Positives = 58/204 (28%), Gaps = 44/204 (21%)
Query: 380 GHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSG----------AVSSV 429
H + + +++ CN S S DG +++W ++ S V
Sbjct: 12 AHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71
Query: 430 LSLTAVQHTLVVS-HESGSIKVWR------------NDKFMKSMQTHKGSVFAV------ 470
+ A + LV + SG + +R + K S +A+
Sbjct: 72 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131
Query: 471 -FLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ---------- 519
L L T + + E + + P + +
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 191
Query: 520 ----GKLFVGCADRTVKIALCNRQ 539
G + G + TV+I+ +
Sbjct: 192 ISERGLIATGFNNGTVQISELSTL 215
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.1 bits (115), Expect = 7e-07
Identities = 19/226 (8%), Positives = 53/226 (23%), Gaps = 28/226 (12%)
Query: 244 KFKDLQGHRDCVTGLAV-GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYV- 301
+ T + + G + + + ++ + L ++ F+ + +
Sbjct: 176 TVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 235
Query: 302 ----DEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGI-----------H 346
L + E + + + +
Sbjct: 236 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL 295
Query: 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRL 406
+ SG L + D ++ W + T++ H + V G +
Sbjct: 296 SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV 355
Query: 407 WSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWR 452
+ + + +L SI+ +R
Sbjct: 356 FDVKFLK-----------KGWRSGMGADLNESLCCVCLDRSIRWFR 390
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.8 bits (127), Expect = 2e-08
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 3/77 (3%)
Query: 334 WNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVST---LAV 390
+ G + + S D+TIK W++ + T+ +
Sbjct: 232 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 291
Query: 391 CNGVLYSGSRDGTIRLW 407
L S S +G I
Sbjct: 292 TKQALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.8 bits (109), Expect = 3e-06
Identities = 29/296 (9%), Positives = 72/296 (24%), Gaps = 16/296 (5%)
Query: 249 QGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLC 308
+G + G + + S++ + + + H H+ C
Sbjct: 17 RGTAVVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIYTEHSHQTTVAKT-SPSGYYC 73
Query: 309 ISGDSGGGIFVWSFSFP-----------LGHEPLKKWNEEKDWRYSGIHALTTSGRYLYT 357
SGD G + +W + G W+ E + G
Sbjct: 74 ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF 133
Query: 358 GSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTV 417
+G S + + + + +H+
Sbjct: 134 DTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVH 193
Query: 418 LEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWL 477
+ + L + V+ +D + +G +
Sbjct: 194 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 253
Query: 478 FTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKI 533
+ DKT+ + +A + E+ + +++ + L A+ +
Sbjct: 254 ASASADKTIKIWNVATLKVEKTI--PVGTRIEDQQLGIIWTKQALVSISANGFINF 307
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.0 bits (107), Expect = 7e-06
Identities = 11/59 (18%), Positives = 22/59 (37%)
Query: 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320
G + S+S DK+I +W++ T + + + +S + G I
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.1 bits (102), Expect = 2e-05
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 395 LYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND 454
+ S S D TI++W+++ + + + L + + LV +G I +
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPV-GTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.5 bits (126), Expect = 2e-08
Identities = 39/295 (13%), Positives = 70/295 (23%), Gaps = 17/295 (5%)
Query: 248 LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTF-KGHDHKVMAVVYVDED 304
GH +T L+ G LFS+ + I+ W + F H + + +
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67
Query: 305 QPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTI 364
+S P G + + S L S +
Sbjct: 68 DLFTVSW------DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 121
Query: 365 KAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSG 424
A +S + S V+ V G +
Sbjct: 122 IAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE 181
Query: 425 AVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLE-----GKWLFT 479
S S N+ + + V L T
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 241
Query: 480 GGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFV-GCADRTVKI 533
G D +V V + ++ + I S + ++++ V D +K
Sbjct: 242 GSLDNSVIVWNM--NKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKF 294
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 50.4 bits (118), Expect = 2e-07
Identities = 21/164 (12%), Positives = 49/164 (29%), Gaps = 4/164 (2%)
Query: 251 HRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCIS 310
+ +A+ F + + V K + + V
Sbjct: 135 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFL 194
Query: 311 GDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLL 370
+ V +S E + + + L TGS D ++ W++
Sbjct: 195 VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 254
Query: 371 DGTLSCTM---SGHKSAVSTLAVCNG-VLYSGSRDGTIRLWSLS 410
+ + + S+V+++ N + S +D I+ W++
Sbjct: 255 KPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.1 bits (112), Expect = 1e-06
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 372 GTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSV 429
G++ GH A++ L+ L+S +G I W +S V + + ++ +
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.8 bits (122), Expect = 1e-07
Identities = 6/67 (8%), Positives = 18/67 (26%), Gaps = 4/67 (5%)
Query: 346 HALTTSGRYLYTGSGDRTIKAWSLLDGTLSC--TMSGHKSAVSTLAVC--NGVLYSGSRD 401
HA + + + + + H V+ + + + + D
Sbjct: 13 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD 72
Query: 402 GTIRLWS 408
+W+
Sbjct: 73 RNAYVWT 79
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.2 bits (118), Expect = 3e-07
Identities = 43/324 (13%), Positives = 85/324 (26%), Gaps = 35/324 (10%)
Query: 239 SKGNVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHV-HTFKGHDHKV 295
V+ +L+ H VTG+ + + D++ +VW+LK + ++
Sbjct: 38 GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA 97
Query: 296 MAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYL 355
V ++ G I + F K + + + L
Sbjct: 98 ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW-HPNSVLL 156
Query: 356 YTGSGDRTIKAWSLLDGTLS------------------CTMSGHKSAVSTLAVCNGVLYS 397
GS D + +S + S V +
Sbjct: 157 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV 216
Query: 398 G--SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND- 454
S D T+ L + L ++ ++ +LV + ++ D
Sbjct: 217 AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITE---SSLVAAGHDCFPVLFTYDS 273
Query: 455 -----KFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCG 509
F + K S DK S + A D + ++
Sbjct: 274 AAGKLSFGGRLDVPKQSSQRGL--TARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQI 331
Query: 510 SVITALLYWQGKLFVGCADRTVKI 533
SV++ + D + I
Sbjct: 332 SVLSGGKAKCSQFCTTGMDGGMSI 355
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.9 bits (112), Expect = 2e-06
Identities = 35/268 (13%), Positives = 73/268 (27%), Gaps = 34/268 (12%)
Query: 249 QGHRDCVTGLAV--GGGFLFSSSFDKSIHVWSL--KDFSHVHTFKGHDHKVMAVVYVDED 304
+ ++ A + + +H++ + VH K H+ +V V + D
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW-APD 62
Query: 305 QPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTI 364
++ + +VW+ + R + + + GSG R I
Sbjct: 63 SNRIVTCGTDRNAYVWTLKG---RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 119
Query: 365 KAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLY------SGSRDGTIRLWSLSDHSLLTV- 417
K + + + +GS D R++S +
Sbjct: 120 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP 179
Query: 418 -------------LEEDSSGAVSSVLSLTAVQHTLVVSHES--GSIKVWRNDKFMKSMQT 462
L +SS + V + + V+ S ++ + DK M
Sbjct: 180 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 239
Query: 463 HKGS----VFAVFLEGKWLFTGGWDKTV 486
+ E + G V
Sbjct: 240 ASETLPLLAVTFITESSLVAAGHDCFPV 267
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.3 bits (100), Expect = 6e-05
Identities = 16/199 (8%), Positives = 41/199 (20%), Gaps = 10/199 (5%)
Query: 269 SFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH 328
+ + + V V + + + +
Sbjct: 178 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKKMAV 236
Query: 329 EPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTL 388
L T + G D ++ + G
Sbjct: 237 ATLASETLPLLA-----VTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQS 290
Query: 389 AVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSL---TAVQHTLVVSHES 445
+ ++ + S + L+ +VS + L A +
Sbjct: 291 SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD 350
Query: 446 GSIKVWRNDKFMKSMQTHK 464
G + +W +++ K
Sbjct: 351 GGMSIWDVRSLESALKDLK 369
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.7 bits (119), Expect = 2e-07
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 334 WNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLD-GTLSCTMSGHKSAVSTLAVC- 391
G + + TGS D I +S+ + ++ HK V+ L
Sbjct: 209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET 268
Query: 392 NGVLYSGSRDGTIRLWS 408
L S D I+ W+
Sbjct: 269 PSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.0 bits (104), Expect = 1e-05
Identities = 38/289 (13%), Positives = 76/289 (26%), Gaps = 17/289 (5%)
Query: 248 LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPL 307
+ GH +T L V L S S+D I WS + H + ++++ +
Sbjct: 9 ISGHNKGITALTVNP--LISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNSKAQEYS 61
Query: 308 CISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAW 367
IS D + + + N + + IK+
Sbjct: 62 SISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTND----DDLLILQSFTGDIIKSV 117
Query: 368 SLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVS 427
L + ++S + AV ++ S + + + S
Sbjct: 118 RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI 177
Query: 428 SVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGS---VFAVFLEGKWLFTGGWDK 484
+ + + W + + K + +E + TG D
Sbjct: 178 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 237
Query: 485 TVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKI 533
+ + + +I V L L AD +K
Sbjct: 238 NIFIYSVKRP---MKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKR 283
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.6 bits (90), Expect = 7e-04
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 377 TMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSV 429
T+SGH ++ L V L SGS DG I WS S + +D S + S+
Sbjct: 8 TISGHNKGITALTVNP--LISGSYDGRIMEWSSSS------MHQDHSNLIVSL 52
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.2 bits (103), Expect = 2e-05
Identities = 18/220 (8%), Positives = 41/220 (18%), Gaps = 32/220 (14%)
Query: 342 YSGIHALTTSGRYLY----------TGSGDRTIKAWSLLDGTLSCTMSGHK-------SA 384
+ + SG G ++ + + +
Sbjct: 66 FLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPR 125
Query: 385 VSTLAVCNG---VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVS-----SVLSLTAVQ 436
V + C +L+ S+ S + + S + + +
Sbjct: 126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPA 185
Query: 437 HTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAG--- 493
+ Q G ++ AG
Sbjct: 186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATM 245
Query: 494 ----DEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADR 529
D E G + A L + + +
Sbjct: 246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH 285
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 37.7 bits (86), Expect = 0.003
Identities = 18/211 (8%), Positives = 41/211 (19%), Gaps = 24/211 (11%)
Query: 244 KFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKD------FSHVHTFKGHDHKVMA 297
L C + S S+ L + A
Sbjct: 157 SDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA 216
Query: 298 V--------VYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYS-----G 344
V+ L + G + + +
Sbjct: 217 AQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD 276
Query: 345 IHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAV---CNGVLY-SGSR 400
+ T + + + G S +S + Y + +
Sbjct: 277 GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD-SDAIIAAQDGASDNYANSAG 335
Query: 401 DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLS 431
+ ++ + + +E D SV +
Sbjct: 336 TEVLDIYDAASDQDQSSVELDKGPESLSVQN 366
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 42.8 bits (99), Expect = 7e-05
Identities = 23/247 (9%), Positives = 55/247 (22%), Gaps = 21/247 (8%)
Query: 249 QGHRDCVTGLAV--GGGFLFSSSFDKSIHVW-SLKDFSHVHTFKGHDHKVMAVVYVDEDQ 305
+ A+ G ++++ + + F D V
Sbjct: 85 GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP 144
Query: 306 PLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365
+ ++ + +K AL S +
Sbjct: 145 RQVYLMRAADDGSLYVAGPDIYKMDVKTGKY--------TVALPLRNWNRKGYSAPDVLY 196
Query: 366 AWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGA 425
W +M + + L T D +
Sbjct: 197 FWPHQSPRHEFSMLYTIARFKD---DKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL 253
Query: 426 VSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGSVFAVFL--EGKWLFTGG 481
+ L + + + + + K +K+ + + V +G L+ GG
Sbjct: 254 YFTGLRSP--KDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGG 310
Query: 482 WDKTVSV 488
++V
Sbjct: 311 TFNDLAV 317
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 22/241 (9%), Positives = 57/241 (23%), Gaps = 25/241 (10%)
Query: 249 QGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGH-DHKVMAVVYVDEDQPL 307
G T + V+S D + + + ++ +D L
Sbjct: 99 DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSL 158
Query: 308 CISGDSGGGIFVWS-----------------FSFPLGHEPLKKWNEEKDWRYSGIHALTT 350
++G + V + + + + + + I
Sbjct: 159 YVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD 218
Query: 351 SGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSA--VSTLAVCNGVLYSGSRDGTIRLWS 408
+ T + L G + + L + +
Sbjct: 219 DKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYD 278
Query: 409 LSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW--RNDKFMKSMQTHKGS 466
L L+ D + V + L + + V+ + +K+++ G
Sbjct: 279 LKQRKLIKAANLDHT--YYCV-AFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGD 335
Query: 467 V 467
+
Sbjct: 336 M 336
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 11/120 (9%), Positives = 24/120 (20%), Gaps = 8/120 (6%)
Query: 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMS-GHKSAVSTLAVC---NGVLYSGSRDG 402
AL Y+ + + + T+ + K T + + G
Sbjct: 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG 62
Query: 403 TIRLWSLSDHSLLTVLEEDSS----GAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMK 458
I L S G +++ + +
Sbjct: 63 DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP 122
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 38.6 bits (88), Expect = 0.002
Identities = 15/142 (10%), Positives = 33/142 (23%), Gaps = 9/142 (6%)
Query: 251 HRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCIS 310
+ ++ LK ++ P I
Sbjct: 209 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY 268
Query: 311 GDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLL 370
+ + + +K N + Y + A G LY G + ++
Sbjct: 269 -GVLNRLAKYDLK---QRKLIKAANLDH--TYYCV-AFDKKGDKLYLGGTFNDLAVFNPD 321
Query: 371 DGTL--SCTMSGHKSAVSTLAV 390
+ + G + +T V
Sbjct: 322 TLEKVKNIKLPGGDMSTTTPQV 343
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.5 bits (98), Expect = 8e-05
Identities = 25/282 (8%), Positives = 61/282 (21%), Gaps = 44/282 (15%)
Query: 247 DLQGHRDCVTGLAV---GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAV----V 299
+ V G + + +S+ L + +
Sbjct: 28 TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGA 87
Query: 300 YVDEDQPLCISGDSGGGIFVWSFSFPLGH------EPLKKWNEEKDWRYSGIHALTTSGR 353
+ D +S + + F E L + + R + A G
Sbjct: 88 ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS 147
Query: 354 YLYTGSGDRTIKAW-------------------SLLDGTLSCTMSGHKSAVSTLAVC--- 391
LY D + + D ++T
Sbjct: 148 KLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARK 207
Query: 392 -NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKV 450
+ + L + + S ++
Sbjct: 208 DIDPADPTAYRTGLLTMDLETGEMAMR---EVRIMDVFYFSTAVNPAKTRAFGAYNVLES 264
Query: 451 W--RNDKFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSV 488
+ + +K + S ++V + +G ++ GG ++
Sbjct: 265 FDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAA 305
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.2 bits (87), Expect = 0.002
Identities = 6/119 (5%), Positives = 31/119 (26%), Gaps = 8/119 (6%)
Query: 353 RYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-----NGVLYSGSRDGTIRLW 407
Y+ + + + ++ + + + + ++ ++
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 408 SLSDHSLL---TVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTH 463
L L + + +L+ TL + +++ + + +
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.1 bits (97), Expect = 1e-04
Identities = 12/194 (6%), Positives = 34/194 (17%), Gaps = 22/194 (11%)
Query: 249 QGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHV---------------HTFKGHDH 293
G + + + + + F
Sbjct: 156 TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYT 215
Query: 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR 353
+ + + + + + G + I+ L
Sbjct: 216 GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY----HRALDRIYLLVDQRD 271
Query: 354 YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNG---VLYSGSRDGTIRLWSLS 410
+ R + G S + + + D T+ +
Sbjct: 272 EWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE 331
Query: 411 DHSLLTVLEEDSSG 424
L + + G
Sbjct: 332 SGEELRSVNQLGHG 345
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 37.8 bits (86), Expect = 0.003
Identities = 25/217 (11%), Positives = 51/217 (23%), Gaps = 26/217 (11%)
Query: 347 ALTTSGRYLY-----TGSGDRTIKAWSLLDGTLSCTMSGHKS---AVS----TLAVCN-- 392
A R +Y + G + + G V+ +A +
Sbjct: 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTV 67
Query: 393 -GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSS-----GAVSSVLSLTAVQHTLVVSHESG 446
+ G R + ++ +E + G + SLT TL+ S
Sbjct: 68 FSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP 127
Query: 447 SIKVWRND----KFMKSMQTHKGS-VFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVI 501
+ V D F + + +F + ++ G
Sbjct: 128 APAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE 187
Query: 502 PTGAIPCGSVIT-ALLYWQGKLFVGCADRTVKIALCN 537
+ A G+L + +
Sbjct: 188 VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLS 224
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 40.2 bits (93), Expect = 5e-04
Identities = 19/157 (12%), Positives = 36/157 (22%), Gaps = 25/157 (15%)
Query: 347 ALTTSGRYLYTGSGDRTIKAWSLLDGTLS-----CTMSGHKSAVSTLAV---CNGVLYSG 398
L+ SGRYL+ D + L + S +S ++ +
Sbjct: 68 RLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGA 127
Query: 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSH----------ESGSI 448
+ + ++ SH E+G I
Sbjct: 128 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 187
Query: 449 KVWRNDKFMKSMQTHKGSVFAVFLEGKWLFTGGWDKT 485
+ ++L GG D +
Sbjct: 188 LLV-------DYTDLNNLKTTEISAERFLHDGGLDGS 217
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 552 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.98 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.93 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.93 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.9 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.87 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.86 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.84 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.84 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.82 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.8 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.79 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.75 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.74 | |
| d1uwha_ | 276 | B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.73 | |
| d1a06a_ | 307 | Calmodulin-dependent protein kinase {Rat (Rattus n | 99.73 | |
| d2j4za1 | 263 | Aurora-related kinase 1 (aurora-2) {Human (Homo sa | 99.73 | |
| d1uu3a_ | 288 | 3-phosphoinositide dependent protein kinase-1 Pdk1 | 99.73 | |
| d2java1 | 269 | Serine/threonine-protein kinase Nek2 {Human (Homo | 99.72 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.7 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.69 | |
| d1nvra_ | 271 | Cell cycle checkpoint kinase chk1 {Human (Homo sap | 99.69 | |
| d1t4ha_ | 270 | Protein kinase wnk1 {Human (Homo sapiens) [TaxId: | 99.69 | |
| d1o6ya_ | 277 | Mycobacterial protein kinase PknB, catalytic domai | 99.69 | |
| d1rjba_ | 325 | Fl cytokine receptor {Human (Homo sapiens) [TaxId: | 99.68 | |
| d1yhwa1 | 293 | pak1 {Human (Homo sapiens) [TaxId: 9606]} | 99.68 | |
| d1jksa_ | 293 | Death-associated protein kinase, Dap {Human (Homo | 99.68 | |
| d1ywna1 | 299 | Vascular endothelial growth factor receptor 2 (kdr | 99.67 | |
| d1mqba_ | 283 | epha2 receptor tyrosine kinase {Human (Homo sapien | 99.67 | |
| d1fota_ | 316 | cAMP-dependent PK, catalytic subunit {Baker's yeas | 99.66 | |
| d1o6la_ | 337 | Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9 | 99.66 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.66 | |
| d1koaa2 | 350 | Twitchin, kinase domain {Caenorhabditis elegans, p | 99.65 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.65 | |
| d1rdqe_ | 350 | cAMP-dependent PK, catalytic subunit {Mouse (Mus m | 99.65 | |
| d1s9ja_ | 322 | Dual specificity mitogen-activated protein kinase | 99.65 | |
| d1xjda_ | 320 | Protein kinase C, theta type {Human (Homo sapiens) | 99.65 | |
| d2jfla1 | 288 | STE20-like serine/threonine-protein kinase, SLK {H | 99.65 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.65 | |
| d1jpaa_ | 299 | ephb2 receptor tyrosine kinase {Mouse (Mus musculu | 99.64 | |
| d1u59a_ | 285 | Tyrosine-protein kinase ZAP-70 {Human (Homo sapien | 99.64 | |
| d1sm2a_ | 263 | Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie | 99.64 | |
| d1qpca_ | 272 | Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax | 99.64 | |
| d1xbba_ | 277 | Tyrosine-protein kinase SYK {Human (Homo sapiens) | 99.64 | |
| d1omwa3 | 364 | G-protein coupled receptor kinase 2 {Cow (Bos taur | 99.64 | |
| d2ozaa1 | 335 | MAP kinase activated protein kinase 2, mapkap2 {Hu | 99.63 | |
| d1xkka_ | 317 | EGF receptor tyrosine kinase, Erbb-1 {Human (Homo | 99.63 | |
| d1ckia_ | 299 | Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax | 99.63 | |
| d1u5ra_ | 309 | Serine/threonine protein kinase TAO2 {Rat (Rattus | 99.63 | |
| d1koba_ | 352 | Twitchin, kinase domain {California sea hare (Aply | 99.63 | |
| d1lufa_ | 301 | Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax | 99.62 | |
| d1opja_ | 287 | Abelsone tyrosine kinase (abl) {Mouse (Mus musculu | 99.62 | |
| d1blxa_ | 305 | Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T | 99.62 | |
| d1mp8a_ | 273 | Focal adhesion kinase 1 (fak) {Human (Homo sapiens | 99.61 | |
| d1k2pa_ | 258 | Bruton's tyrosine kinase (Btk) {Human (Homo sapien | 99.61 | |
| d1xwsa_ | 273 | Proto-oncogene serine/threonine-protein kinase Pim | 99.6 | |
| d1phka_ | 277 | gamma-subunit of glycogen phosphorylase kinase (Ph | 99.6 | |
| d1fgka_ | 299 | Fibroblast growth factor receptor 1 {Human (Homo s | 99.6 | |
| d1fmka3 | 285 | c-src tyrosine kinase {Human (Homo sapiens) [TaxId | 99.59 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.58 | |
| d1vjya_ | 303 | Type I TGF-beta receptor R4 {Human (Homo sapiens) | 99.58 | |
| d1u46a_ | 273 | Activated CDC42 kinase 1, ACK1 {Human (Homo sapien | 99.58 | |
| d1byga_ | 262 | Carboxyl-terminal src kinase (csk) {Human (Homo sa | 99.57 | |
| d1r0pa_ | 311 | Hepatocyte growth factor receptor, c-MET {Human (H | 99.57 | |
| d1ua2a_ | 299 | Cell division protein kinase 7, CDK7 {Human (Homo | 99.56 | |
| d1fvra_ | 309 | Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.56 | |
| d1csna_ | 293 | Casein kinase-1, CK1 {Fission yeast (Schizosacchar | 99.55 | |
| d1tkia_ | 321 | Titin, kinase domain {Human (Homo sapiens) [TaxId: | 99.55 | |
| d1p4oa_ | 308 | Insulin-like growth factor 1 receptor {Human (Homo | 99.55 | |
| d1t46a_ | 311 | c-KIT receptor {Human (Homo sapiens) [TaxId: 9606] | 99.54 | |
| d1vzoa_ | 322 | Ribosomal protein S6 kinase alpha 5, Msk1 {Human ( | 99.53 | |
| d3blha1 | 318 | Cell division protein kinase 9, CDK9 {Human (Homo | 99.5 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.49 | |
| d1gz8a_ | 298 | Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T | 99.45 | |
| d1ob3a_ | 286 | Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) | 99.43 | |
| d1cm8a_ | 346 | MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: | 99.43 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.41 | |
| d1q5ka_ | 350 | Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho | 99.41 | |
| d1pmea_ | 345 | MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606 | 99.36 | |
| d2b1pa1 | 355 | c-jun N-terminal kinase (jnk3s) {Human (Homo sapie | 99.33 | |
| d1q8ya_ | 362 | Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T | 99.33 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.33 | |
| d2gfsa1 | 348 | MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606] | 99.31 | |
| d3bqca1 | 328 | Protein kinase CK2, alpha subunit {Rattus norvegic | 99.26 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.25 | |
| d1unla_ | 292 | Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T | 99.19 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.07 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.01 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.72 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.7 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.68 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.68 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.57 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.56 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.39 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.38 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.36 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.33 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.2 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.16 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.03 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.0 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.99 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.94 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.84 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.83 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.8 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.64 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.63 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.49 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.41 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.41 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.2 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.12 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.92 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.7 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.54 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.51 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 96.41 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.41 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.05 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.01 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.3 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 94.33 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 94.32 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 93.59 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 93.35 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 93.23 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 92.65 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 91.49 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 89.36 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 88.12 | |
| d1a12a_ | 401 | Regulator of chromosome condensation RCC1 {Human ( | 86.39 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 80.38 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 80.17 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.6e-35 Score=285.26 Aligned_cols=280 Identities=16% Similarity=0.281 Sum_probs=229.6
Q ss_pred eEEEEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeE-----EEEEeCCCCCeEEEEEecCCCCEEEEEcCC
Q 008820 242 NVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSH-----VHTFKGHDHKVMAVVYVDEDQPLCISGDSG 314 (552)
Q Consensus 242 ~~~~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~-----~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d 314 (552)
...++++ +|.+.|++++|+ +++|+||+ ||.|+|||+.++.. .....+|.+.|.+++|+|++. +|++|+.|
T Consensus 42 ~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~-~l~s~~~d 118 (337)
T d1gxra_ 42 ARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEA 118 (337)
T ss_dssp EEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS-EEEEEESS
T ss_pred ceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC-EEEEeecc
Confidence 3445666 899999999999 89999997 89999999976432 233457999999999999765 77999999
Q ss_pred CcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--C
Q 008820 315 GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--N 392 (552)
Q Consensus 315 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~ 392 (552)
|.|++||+...... .......+.. .....++++++.++++++.|+.|++||+.++++.....+|...|++++|+ +
T Consensus 119 g~i~iwd~~~~~~~-~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~ 195 (337)
T d1gxra_ 119 STLSIWDLAAPTPR-IKAELTSSAP--ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG 195 (337)
T ss_dssp SEEEEEECCCC--E-EEEEEECSSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred cccccccccccccc-cccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999998754322 1122222221 22345678899999999999999999999999999999999999999998 4
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc-ceeeeecccceEEEEE
Q 008820 393 GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK-FMKSMQTHKGSVFAVF 471 (552)
Q Consensus 393 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~h~~~v~~v~ 471 (552)
..+++++.|+.|++||+++++.+..+... ..+.+ ++++|+++++++|+.|+.+++||... .......|...|.++.
T Consensus 196 ~~~~~~~~d~~v~i~d~~~~~~~~~~~~~--~~i~~-l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~ 272 (337)
T d1gxra_ 196 TKLWTGGLDNTVRSWDLREGRQLQQHDFT--SQIFS-LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLK 272 (337)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECS--SCEEE-EEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEE
T ss_pred cccccccccccccccccccceeecccccc--cceEE-EEEcccccccceeccccccccccccccccccccccccccceEE
Confidence 49999999999999999999988877643 44555 68999999999999999999999764 3446678999999998
Q ss_pred e--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEEeCCCeEEEEEe
Q 008820 472 L--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGCADRTVKIALC 536 (552)
Q Consensus 472 ~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~Dg~v~iw~~ 536 (552)
| ++++|++++.||.|++||+.+++......+ ...|.+++|++ ..|++|+.||+|+|||+
T Consensus 273 ~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~------~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE------SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC------SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCCEEEEccC------CCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 7 889999999999999999998877655443 56799999995 35999999999999997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.6e-35 Score=280.50 Aligned_cols=277 Identities=23% Similarity=0.335 Sum_probs=234.2
Q ss_pred EEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC
Q 008820 246 KDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (552)
Q Consensus 246 ~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (552)
+.|+||.++|++++|+ +++|+||+.||+|+|||+.+++.+.++.+|...|.+++|+|++. ++++++.++.+..|+..
T Consensus 11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 89 (317)
T d1vyhc1 11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK-LLASCSADMTIKLWDFQ 89 (317)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSS-EEEEEETTSCCCEEETT
T ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccc-ccccccccccccccccc
Confidence 5689999999999999 89999999999999999999999999999999999999998654 77899999999999987
Q ss_pred CCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCC
Q 008820 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRD 401 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~d 401 (552)
.......... +. .......++++++.+++++.|+.+++||+++++.+..+.+|...+.+++++ +.+|++++.|
T Consensus 90 ~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 164 (317)
T d1vyhc1 90 GFECIRTMHG---HD--HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 164 (317)
T ss_dssp SSCEEECCCC---CS--SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cccccccccc---cc--ccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCC
Confidence 6543322221 11 122345778899999999999999999999999999999999999999999 3499999999
Q ss_pred CcEEEEECCCCceeEEEecCCCCceEEEEEEcC--------------------CCCEEEEEECCCcEEEEeCC--cceee
Q 008820 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA--------------------VQHTLVVSHESGSIKVWRND--KFMKS 459 (552)
Q Consensus 402 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~--------------------~~~~l~~g~~dg~i~iwd~~--~~~~~ 459 (552)
+.|++|++.+++....+..+. ..+.. +.++| .+..+++++.|+.|++||.. +++..
T Consensus 165 ~~v~~~~~~~~~~~~~~~~~~-~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~ 242 (317)
T d1vyhc1 165 QTVRVWVVATKECKAELREHR-HVVEC-ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 242 (317)
T ss_dssp SCEEEEETTTCCEEEEECCCS-SCEEE-EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred CeEEEEeeccceeeEEEecCC-CCceE-EEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEE
Confidence 999999999999888887653 33333 35544 34679999999999999965 46778
Q ss_pred eecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEEeCCCeEEEEE
Q 008820 460 MQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGCADRTVKIAL 535 (552)
Q Consensus 460 ~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~Dg~v~iw~ 535 (552)
+.+|...|.++.+ ++++|++|+.||.|++||+.+++....+..+ ...|++++|++ ..|++|+.||+|+|||
T Consensus 243 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h-----~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH-----EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC-----SSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCC-----CCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 8999999999886 8999999999999999999988776665442 66799999995 3599999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.8e-34 Score=277.65 Aligned_cols=291 Identities=19% Similarity=0.285 Sum_probs=223.5
Q ss_pred EEEeecCccce-EEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC
Q 008820 245 FKDLQGHRDCV-TGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (552)
Q Consensus 245 ~~~l~~H~~~V-~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (552)
..+|+||.+.| +|++|++++|+||+.||+|+|||+.+++++.++.+|.+.|.+++|+|+ .++++|+.|++|++|++.
T Consensus 5 ~~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~--~~l~s~s~D~~i~iw~~~ 82 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG--GILVSGSTDRTVRVWDIK 82 (355)
T ss_dssp EEEEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT--TEEEEEETTCCEEEEETT
T ss_pred cEEECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC--CEEEEEeccccccccccc
Confidence 56799998875 788889999999999999999999999999999999999999999874 378999999999999998
Q ss_pred CCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeE-----------------------EecC
Q 008820 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSC-----------------------TMSG 380 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~-----------------------~~~~ 380 (552)
........ ...............+++..+++++.|+.|++||+.+..... ....
T Consensus 83 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T d1nexb2 83 KGCCTHVF---EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 159 (355)
T ss_dssp TTEEEEEE---CCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred cccccccc---ccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence 65432222 122222333344566777899999999999999997654322 2234
Q ss_pred CCCCeEEEEEeCCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--ccee
Q 008820 381 HKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMK 458 (552)
Q Consensus 381 h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~ 458 (552)
|...+.+....++.+++++.|+.|++||+++++.+.....+.. ... ...+++++..+++++.|+.|++||.. ..+.
T Consensus 160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~ 237 (355)
T d1nexb2 160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD-RIY-STIYDHERKRCISASMDTTIRIWDLENGELMY 237 (355)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEE-EEEEETTTTEEEEEETTSCEEEEETTTCCEEE
T ss_pred ccccccccccccceeeeecccceeeeeecccccceeeeecccc-ccc-cccccccceeeecccccceEEeeecccccccc
Confidence 5556666666678999999999999999999998888776543 333 36899999999999999999999965 4677
Q ss_pred eeecccceEEEEEecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEE-EEe-CCeEEEEeCCCeEEEEEe
Q 008820 459 SMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITAL-LYW-QGKLFVGCADRTVKIALC 536 (552)
Q Consensus 459 ~~~~h~~~v~~v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l-~~~-~~~l~s~s~Dg~v~iw~~ 536 (552)
.+.+|...|.++.+++++|++|+.||.|++||+++......... ..+.++ +++ ++.+++++.||.|++||+
T Consensus 238 ~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~g~d~~i~vwd~ 310 (355)
T d1nexb2 238 TLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHH-------TNLSAITTFYVSDNILVSGSENQFNIYNL 310 (355)
T ss_dssp EECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCCEEEEEEC-------TTCCCCCEEEECSSEEEEEETTEEEEEET
T ss_pred ccccccccccccccccceeeeeecccccccccccccceeccccc-------CCceEEEEEcCCCCEEEEEeCCEEEEEEC
Confidence 88999999999999999999999999999999988755443322 112222 333 455667777999999999
Q ss_pred cCCcceeE-EEeccc
Q 008820 537 NRQIPEIF-SLLLHI 550 (552)
Q Consensus 537 ~~~~~~~~-~~~gh~ 550 (552)
+ +++.+. .+.+|.
T Consensus 311 ~-tg~~~~~~~~~~~ 324 (355)
T d1nexb2 311 R-SGKLVHANILKDA 324 (355)
T ss_dssp T-TCCBCCSCTTTTC
T ss_pred C-CCCEEEEEecCCC
Confidence 7 343332 344553
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.7e-34 Score=276.17 Aligned_cols=287 Identities=23% Similarity=0.326 Sum_probs=227.5
Q ss_pred EEEeecCccceE-EEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC
Q 008820 245 FKDLQGHRDCVT-GLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (552)
Q Consensus 245 ~~~l~~H~~~V~-~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (552)
...|+||.+.|. |+.++|++|+||+.||+|+|||+.++++++++.+|.+.|.+++|+|+ ++++|+.|+.+++|+..
T Consensus 9 ~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~---~l~s~s~D~~~~~~~~~ 85 (342)
T d2ovrb2 9 PKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN---IIISGSTDRTLKVWNAE 85 (342)
T ss_dssp CEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT---EEEEEETTSCEEEEETT
T ss_pred CEEECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC---ccccceecccccccccc
Confidence 456899999874 56777999999999999999999999999999999999999999863 88999999999999987
Q ss_pred CCCCCcccccc--------------------------ccCCCc-------eeeeEEEEeeCCCEEEEeeCCCcEEEEECC
Q 008820 324 FPLGHEPLKKW--------------------------NEEKDW-------RYSGIHALTTSGRYLYTGSGDRTIKAWSLL 370 (552)
Q Consensus 324 ~~~~~~~~~~~--------------------------~~~~~~-------~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~ 370 (552)
........... ...... ..............+++++.|+.|++||..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~ 165 (342)
T d2ovrb2 86 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE 165 (342)
T ss_dssp TTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGG
T ss_pred cccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecc
Confidence 53221110000 000000 000112334455678999999999999999
Q ss_pred CCceeEEecCCCCCeEEEEEeCCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEE
Q 008820 371 DGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKV 450 (552)
Q Consensus 371 ~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 450 (552)
..+.+..+.+|...+.++.+.+..+++++.||.|++||++.++.+..+..+. ..+ .+++++++++++|+.||.|++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~-~~v---~~~~~~~~~l~s~s~d~~i~i 241 (342)
T d2ovrb2 166 TETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLT---SGMELKDNILVSGNADSTVKI 241 (342)
T ss_dssp GTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCC-SCE---EEEEEETTEEEEEETTSCEEE
T ss_pred cceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccc-cce---eEEecCCCEEEEEcCCCEEEE
Confidence 9999999999999988888878899999999999999999999998887663 333 345556789999999999999
Q ss_pred EeCCc--ceeeee---cccceEEEEEecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCe--EE
Q 008820 451 WRNDK--FMKSMQ---THKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGK--LF 523 (552)
Q Consensus 451 wd~~~--~~~~~~---~h~~~v~~v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~ 523 (552)
||... ....+. .|...+.++.++++++++|+.||+|++||+++++....+.......+...|++++|+|+. ++
T Consensus 242 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la 321 (342)
T d2ovrb2 242 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCA 321 (342)
T ss_dssp EETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEE
T ss_pred EecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEE
Confidence 99653 333443 467889999999999999999999999999998877665544444457789999999764 78
Q ss_pred EEeCCCe----EEEEEecC
Q 008820 524 VGCADRT----VKIALCNR 538 (552)
Q Consensus 524 s~s~Dg~----v~iw~~~~ 538 (552)
+|+.||+ |++||++.
T Consensus 322 ~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 322 VGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EECSSSSSCCEEEEEECCC
T ss_pred EEeCCCCCeeEEEEEeCCC
Confidence 8888885 99999984
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.4e-33 Score=269.56 Aligned_cols=280 Identities=16% Similarity=0.244 Sum_probs=231.0
Q ss_pred EEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q 008820 245 FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (552)
Q Consensus 245 ~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 322 (552)
.++|+||.++|++++|+ +++|+||+.||+|+|||+.+++.+..+..|...|.+++|+|++. ++++|+.|+.+++|+.
T Consensus 48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~d~~i~~~~~ 126 (340)
T d1tbga_ 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN-YVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSS-EEEEEETTCCEEEEES
T ss_pred eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccce-eeeeecccceeecccc
Confidence 46799999999999999 89999999999999999999999999999999999999999655 7899999999999998
Q ss_pred CCCCCCccc-cccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEe
Q 008820 323 SFPLGHEPL-KKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGS 399 (552)
Q Consensus 323 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~ 399 (552)
......... .....+... ........+..+.....|.....++............+...+....+. +.++++++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (340)
T d1tbga_ 127 KTREGNVRVSRELAGHTGY---LSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp SSSCSCCCEEEEECCCSSC---EEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred cccccccccceeccccccc---ccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEee
Confidence 765433322 222222221 112334455678888899999999998888888888888889888888 45999999
Q ss_pred CCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcc--eeee--ecccceEEEEEe--c
Q 008820 400 RDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF--MKSM--QTHKGSVFAVFL--E 473 (552)
Q Consensus 400 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~--~~~~--~~h~~~v~~v~~--~ 473 (552)
.|+.|++||+++++++..+..+ ...+.+ ++|+|++++|++|+.||.|++||.+.. ...+ ..|...+.++.+ +
T Consensus 204 ~d~~v~i~d~~~~~~~~~~~~h-~~~i~~-v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 281 (340)
T d1tbga_ 204 CDASAKLWDVREGMCRQTFTGH-ESDINA-ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281 (340)
T ss_dssp TTTEEEEEETTTTEEEEEECCC-SSCEEE-EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSS
T ss_pred cCceEEEEECCCCcEEEEEeCC-CCCeEE-EEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCC
Confidence 9999999999999999998875 345555 699999999999999999999997643 2222 356677888877 8
Q ss_pred CCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEEeCCCeEEEEE
Q 008820 474 GKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVGCADRTVKIAL 535 (552)
Q Consensus 474 ~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~s~Dg~v~iw~ 535 (552)
+++|++|+.||.|++||+.+++....+..+ ...|++++|+++ .|++|+.||.|+|||
T Consensus 282 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H-----~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGH-----DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTCCEEEEECCC-----SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEECCCEEEEEECCCCcEEEEEcCC-----CCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 899999999999999999988777665542 667999999964 599999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.2e-33 Score=271.70 Aligned_cols=279 Identities=14% Similarity=0.175 Sum_probs=225.9
Q ss_pred cCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCC
Q 008820 250 GHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLG 327 (552)
Q Consensus 250 ~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 327 (552)
.+++.+..++++ ++.|+.++ ++.|.+||+++++..+.+.+|...|++++|+|++ .+|++|+.||+|++||+.....
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g-~~latg~~dg~i~iwd~~~~~~ 92 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQTTH 92 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSSTTC
T ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCC-CeEeccccCceEeeeeeecccc
Confidence 344556677887 88888876 5679999999999999999999999999999975 5889999999999999987654
Q ss_pred CccccccccCCCceeeeEEEEeeCCCEEEEeeC--CCcEEEEECCCCceeEEecCCCCCeEEEEEe-C-C-EEEEEeCCC
Q 008820 328 HEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG--DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-N-G-VLYSGSRDG 402 (552)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~-~-~l~s~~~dg 402 (552)
... ..+..+.. . ....+|+++++++++++. +..+++|++++++...++.+|...|++++|+ + + .+++|+.|+
T Consensus 93 ~~~-~~~~~~~~-~-v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~ 169 (311)
T d1nr0a1 93 ILK-TTIPVFSG-P-VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 169 (311)
T ss_dssp CEE-EEEECSSS-C-EEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred ccc-cccccccC-c-cccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence 322 11222222 1 223478888999988876 4569999999999999999999999999998 2 3 688999999
Q ss_pred cEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--cee-------eeecccceEEEEEe-
Q 008820 403 TIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMK-------SMQTHKGSVFAVFL- 472 (552)
Q Consensus 403 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~-------~~~~h~~~v~~v~~- 472 (552)
.|++||+++++....+..+ ...+.+ +.++|+++++++++.|+.|++||... ... ...+|...|.+++|
T Consensus 170 ~i~i~d~~~~~~~~~~~~~-~~~i~~-v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s 247 (311)
T d1nr0a1 170 TVAIFEGPPFKFKSTFGEH-TKFVHS-VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 247 (311)
T ss_dssp CEEEEETTTBEEEEEECCC-SSCEEE-EEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred ccccccccccccccccccc-cccccc-cccCccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 9999999999988888765 344555 68999999999999999999999653 222 23468899999987
Q ss_pred -cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEec
Q 008820 473 -EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCN 537 (552)
Q Consensus 473 -~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~ 537 (552)
++++|++|+.||.|++||++++++...+..... ....+.++.|+++.|++++.||.|++||.+
T Consensus 248 ~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~--~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTR--IEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS--GGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCC--ccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 799999999999999999999988776554332 134567888888999999999999999974
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.6e-33 Score=265.88 Aligned_cols=282 Identities=16% Similarity=0.146 Sum_probs=215.8
Q ss_pred EEEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEe-CCCCCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 008820 244 KFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFK-GHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (552)
Q Consensus 244 ~~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vw 320 (552)
..+.+.||.++|++++|+ +++|+||+.||+|++||+++++.+..+. +|...|++++|+|++. +++++.|+.+++|
T Consensus 4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~--~~~~~~d~~v~~~ 81 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD--LFTVSWDDHLKVV 81 (299)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC--EEEEETTTEEEEE
T ss_pred cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce--eecccceeeEEEe
Confidence 457799999999999999 8999999999999999999999988874 6999999999999764 4677789999999
Q ss_pred eCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEE
Q 008820 321 SFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSG 398 (552)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~ 398 (552)
+.................. .....+++++++.+++++ ++.+++|+.. +..... ....+.+++|+ +.++++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~g~~~~~~~-~~~i~~~~~~--~~~~~~--~~~~~~~~~~s~~~~~l~~g 154 (299)
T d1nr0a2 82 PAGGSGVDSSKAVANKLSS--QPLGLAVSADGDIAVAAC-YKHIAIYSHG--KLTEVP--ISYNSSCVALSNDKQFVAVG 154 (299)
T ss_dssp CSSSSSSCTTSCCEEECSS--CEEEEEECTTSSCEEEEE-SSEEEEEETT--EEEEEE--CSSCEEEEEECTTSCEEEEE
T ss_pred ccCCccccccccccccccc--cccccccccccccccccc-cccccccccc--cccccc--cccccccccccccccccccc
Confidence 9875432222111111111 112346788888776665 4689999853 333333 34457889998 3489999
Q ss_pred eCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc-----ceeeeecccceEEEEEe-
Q 008820 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK-----FMKSMQTHKGSVFAVFL- 472 (552)
Q Consensus 399 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~-----~~~~~~~h~~~v~~v~~- 472 (552)
+.|+.|++||+++++........+...+.+ ++++|+++++++++.|+.|++||..+ ....+.+|...|.+++|
T Consensus 155 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 233 (299)
T d1nr0a2 155 GQDSKVHVYKLSGASVSEVKTIVHPAEITS-VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS 233 (299)
T ss_dssp ETTSEEEEEEEETTEEEEEEEEECSSCEEE-EEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC
T ss_pred cccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999887655444444555555 69999999999999999999999643 23456789999999887
Q ss_pred -cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-CeEEEEeCCCeEEEEEec
Q 008820 473 -EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-GKLFVGCADRTVKIALCN 537 (552)
Q Consensus 473 -~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~s~s~Dg~v~iw~~~ 537 (552)
++++|++|+.||.|++||+++........... .+...+.++.+.+ +.|++|+.||+|++||++
T Consensus 234 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGA--HAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TTSSEEEEEETTSCEEEEETTCTTSCCEEETTS--STTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred ccccceEEEcCCCEEEEEECCCCCcceEEEecC--CCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence 89999999999999999998765443332221 1255688887774 579999999999999985
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.7e-33 Score=275.90 Aligned_cols=280 Identities=20% Similarity=0.282 Sum_probs=221.0
Q ss_pred EEEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEe------------------CCCCCeEEEEEecC
Q 008820 244 KFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFK------------------GHDHKVMAVVYVDE 303 (552)
Q Consensus 244 ~~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~------------------~h~~~v~~v~~~~~ 303 (552)
.+....+|.+.|+|++|+ |++|++|+ |++|+|||+.+++.+..+. .|...|++++|+|+
T Consensus 54 ~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~ 132 (388)
T d1erja_ 54 ELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 132 (388)
T ss_dssp EEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred eeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC
Confidence 344555899999999999 89999987 8999999999998877664 35667999999996
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCC
Q 008820 304 DQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKS 383 (552)
Q Consensus 304 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~ 383 (552)
+. +|++|+.||.|++||...+..... ...+.. ......+++++..+++|+.++.+++||.++.........+..
T Consensus 133 ~~-~l~s~~~dg~v~i~~~~~~~~~~~---~~~h~~--~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 206 (388)
T d1erja_ 133 GK-FLATGAEDRLIRIWDIENRKIVMI---LQGHEQ--DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG 206 (388)
T ss_dssp SS-EEEEEETTSCEEEEETTTTEEEEE---ECCCSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC
T ss_pred CC-cceecccccccccccccccccccc---cccccc--cccccccccccccccccccceeeeeeeccccccccccccccc
Confidence 54 889999999999999886543322 222222 122346677888999999999999999999888877775555
Q ss_pred CeEEEEEe---CCEEEEEeCCCcEEEEECCCCceeEEEecC------CCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 008820 384 AVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLLTVLEED------SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND 454 (552)
Q Consensus 384 ~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 454 (552)
..++.+. +.+|++++.|+.|++||.+++.....+... +...+.+ +.++|++++|++|+.||.|++||+.
T Consensus 207 -~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~s~~~d~~i~iwd~~ 284 (388)
T d1erja_ 207 -VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS-VVFTRDGQSVVSGSLDRSVKLWNLQ 284 (388)
T ss_dssp -EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE-EEECTTSSEEEEEETTSEEEEEEC-
T ss_pred -cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEE-EEECCCCCEEEEEECCCcEEEEecc
Confidence 4555555 349999999999999999999887766432 2344554 6999999999999999999999964
Q ss_pred c--------------ceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEe
Q 008820 455 K--------------FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW 518 (552)
Q Consensus 455 ~--------------~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 518 (552)
. .......|...|.++.+ ++++|++|+.||.|++||+.+++....+..+ ...|.++++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H-----~~~V~~~~~~ 359 (388)
T d1erja_ 285 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH-----RNSVISVAVA 359 (388)
T ss_dssp --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC-----SSCEEEEEEC
T ss_pred CCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCC-----CCCEEEEEEe
Confidence 2 23445678889999887 8999999999999999999998877666543 5678888764
Q ss_pred C--------CeEEEEeCCCeEEEEEec
Q 008820 519 Q--------GKLFVGCADRTVKIALCN 537 (552)
Q Consensus 519 ~--------~~l~s~s~Dg~v~iw~~~ 537 (552)
+ ..|++|+.||+|+||+++
T Consensus 360 ~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 360 NGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp SSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred cCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 2 249999999999999986
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.7e-33 Score=262.83 Aligned_cols=277 Identities=19% Similarity=0.294 Sum_probs=223.0
Q ss_pred EEEeecCccceEEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCC
Q 008820 245 FKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSF 324 (552)
Q Consensus 245 ~~~l~~H~~~V~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 324 (552)
+..+.+|...|+|++|++++|+||+.||+|+|||+++++++.++++|.+.|++++|. +.+|++|+.|+.|++|++..
T Consensus 8 i~~~~~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~---~~~l~s~s~D~~i~~~~~~~ 84 (293)
T d1p22a2 8 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNT 84 (293)
T ss_dssp EECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEESSS
T ss_pred EeccCCCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc---cceeeccccccccccccccc
Confidence 445678999999999999999999999999999999999999999999999999873 45899999999999999986
Q ss_pred CCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCce---eEEecCCCCCeEEEEEeCCEEEEEeCC
Q 008820 325 PLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTL---SCTMSGHKSAVSTLAVCNGVLYSGSRD 401 (552)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~~~~~l~s~~~d 401 (552)
+......... .............++++..++.+.+||..+... ...+..|...+.++.+....+++++.|
T Consensus 85 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d 157 (293)
T d1p22a2 85 GEMLNTLIHH-------CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD 157 (293)
T ss_dssp CCEEEEECCC-------CSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETT
T ss_pred cccccccccc-------ccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCC
Confidence 6433222211 112334556677899999999999999986643 445678899999999988899999999
Q ss_pred CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEecCCEEEE
Q 008820 402 GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFLEGKWLFT 479 (552)
Q Consensus 402 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~~~~~l~s 479 (552)
+.|++||+++++.+..+..+.. .+ ..+++++..+++++.||.|++||.+ +.+....+|...+..+.+++.+|++
T Consensus 158 ~~i~~~d~~~~~~~~~~~~~~~-~v---~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 233 (293)
T d1p22a2 158 RTIKVWNTSTCEFVRTLNGHKR-GI---ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVS 233 (293)
T ss_dssp SEEEEEETTTCCEEEEEECCSS-CE---EEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEE
T ss_pred CceeeecCCCCcEEEEEccccc-cc---ccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEEE
Confidence 9999999999999988876533 22 3455567899999999999999965 4667778899999999999999999
Q ss_pred EeCCCeEEEEecCCCeeeeeeccC----CCcccCcceEEEEEeCCeEEEEeCCCeEEEEE
Q 008820 480 GGWDKTVSVQELAGDEFEEDVIPT----GAIPCGSVITALLYWQGKLFVGCADRTVKIAL 535 (552)
Q Consensus 480 gs~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~ 535 (552)
|+.||.|++||+.+.......... ....|...|++++|++..|++|+.||+|+|||
T Consensus 234 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred EcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence 999999999998543211110000 00123667899999988999999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3e-31 Score=258.17 Aligned_cols=298 Identities=21% Similarity=0.357 Sum_probs=231.2
Q ss_pred CcceEEEeeCCCeEEEEE---------eecCccceEEEEEc-CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCe--EE
Q 008820 230 GVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKV--MA 297 (552)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v--~~ 297 (552)
+++.++++..++.+++|+ +.+|.++|++++|+ +++|++|+.|++|++|+....+.......+.... ..
T Consensus 22 ~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 101 (355)
T d1nexb2 22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 101 (355)
T ss_dssp ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEecccccccccccccccccccccccccccccc
Confidence 467899999999999987 57899999999999 8899999999999999999998887776544443 34
Q ss_pred EEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccc--------cC--------CCceeeeEEEEeeCCCEEEEeeCC
Q 008820 298 VVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWN--------EE--------KDWRYSGIHALTTSGRYLYTGSGD 361 (552)
Q Consensus 298 v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--------~~--------~~~~~~~~~~~~~~~~~l~sgs~d 361 (552)
..+.+ +...+++++.|+.|++||+............. .. ...+...+....++++.++++..|
T Consensus 102 ~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d 180 (355)
T d1nexb2 102 IVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD 180 (355)
T ss_dssp EEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETT
T ss_pred ccccc-ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeeccc
Confidence 44445 45578999999999999998654322111100 00 001122355677889999999999
Q ss_pred CcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEE
Q 008820 362 RTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTL 439 (552)
Q Consensus 362 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 439 (552)
+.|++||+++++.+....++...+.++.++ +..+++++.|++|++||++++..+..+..+. ..+.+ +++ +++++
T Consensus 181 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~-~~v~~-~~~--~~~~l 256 (355)
T d1nexb2 181 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT-ALVGL-LRL--SDKFL 256 (355)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCS-SCCCE-EEE--CSSEE
T ss_pred ceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccc-ccccc-ccc--cccee
Confidence 999999999999999999999999999999 4599999999999999999999999988764 34443 455 46799
Q ss_pred EEEECCCcEEEEeCCcceeeeecccceEEEE---EecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEE
Q 008820 440 VVSHESGSIKVWRNDKFMKSMQTHKGSVFAV---FLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALL 516 (552)
Q Consensus 440 ~~g~~dg~i~iwd~~~~~~~~~~h~~~v~~v---~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~ 516 (552)
++|+.||.|++||.++....+..|...+.++ .+++.++++|+ ||.|++||++++++...... .+...|.+++
T Consensus 257 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~----~~~~~V~~v~ 331 (355)
T d1nexb2 257 VSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANIL----KDADQIWSVN 331 (355)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTT----TTCSEEEEEE
T ss_pred eeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEec----CCCCCEEEEE
Confidence 9999999999999998888888887766554 34777777665 89999999998876543221 2367799999
Q ss_pred EeCCe-EEEEeCCCeEEEEEec
Q 008820 517 YWQGK-LFVGCADRTVKIALCN 537 (552)
Q Consensus 517 ~~~~~-l~s~s~Dg~v~iw~~~ 537 (552)
|+++. +++++.||.++||.++
T Consensus 332 ~~~~~~~~~~s~dg~~~l~~~d 353 (355)
T d1nexb2 332 FKGKTLVAAVEKDGQSFLEILD 353 (355)
T ss_dssp EETTEEEEEEESSSCEEEEEEE
T ss_pred EcCCeEEEEEECCCcEEEEEEe
Confidence 99876 6678899998877665
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.8e-31 Score=256.26 Aligned_cols=260 Identities=16% Similarity=0.166 Sum_probs=206.3
Q ss_pred eeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeE--EEEEeCC
Q 008820 225 ARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSH--VHTFKGH 291 (552)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~--~~~~~~h 291 (552)
...++.++.++... ...+.+|+ +.+|.+.|++++|+ +++|++|+.||+|+|||+.+++. ...+.+|
T Consensus 23 ~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~ 101 (311)
T d1nr0a1 23 LGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF 101 (311)
T ss_dssp CEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECS
T ss_pred EEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccc
Confidence 34445555555542 33444443 67999999999999 99999999999999999987754 4568899
Q ss_pred CCCeEEEEEecCCCCEEEEEcC--CCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCC-EEEEeeCCCcEEEEE
Q 008820 292 DHKVMAVVYVDEDQPLCISGDS--GGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWS 368 (552)
Q Consensus 292 ~~~v~~v~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~dg~i~iwd 368 (552)
.++|.+++|+|++. ++++++. +..+++|++++.+....+ ..+.. .. ...+|+|+++ .+++|+.||.|++||
T Consensus 102 ~~~v~~v~~s~d~~-~l~~~~~~~~~~~~v~~~~~~~~~~~l---~~h~~-~v-~~v~~~~~~~~~l~sgs~d~~i~i~d 175 (311)
T d1nr0a1 102 SGPVKDISWDSESK-RIAAVGEGRERFGHVFLFDTGTSNGNL---TGQAR-AM-NSVDFKPSRPFRIISGSDDNTVAIFE 175 (311)
T ss_dssp SSCEEEEEECTTSC-EEEEEECCSSCSEEEEETTTCCBCBCC---CCCSS-CE-EEEEECSSSSCEEEEEETTSCEEEEE
T ss_pred cCcccccccccccc-ccccccccccccccccccccccccccc---ccccc-cc-ccccccccceeeeccccccccccccc
Confidence 99999999999776 4555554 567999999876554433 22322 12 2346788877 588999999999999
Q ss_pred CCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecC------CCCceEEEEEEcCCCCEEE
Q 008820 369 LLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEED------SSGAVSSVLSLTAVQHTLV 440 (552)
Q Consensus 369 ~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~l~ 440 (552)
+++++....+..|..+|+++.++ ++++++++.|+.|++||+++++....+... +.+.+.+ ++|+|++++|+
T Consensus 176 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~s~~~~~l~ 254 (311)
T d1nr0a1 176 GPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFG-LTWSPDGTKIA 254 (311)
T ss_dssp TTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEE-EEECTTSSEEE
T ss_pred ccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccc-cccCCCCCEEE
Confidence 99999999999999999999999 449999999999999999999888777543 2344555 69999999999
Q ss_pred EEECCCcEEEEeCC--cceeeeeccc---ceEEEEEecCCEEEEEeCCCeEEEEecC
Q 008820 441 VSHESGSIKVWRND--KFMKSMQTHK---GSVFAVFLEGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 441 ~g~~dg~i~iwd~~--~~~~~~~~h~---~~v~~v~~~~~~l~sgs~dg~i~iwd~~ 492 (552)
+|+.||.|++||.. ++++.+..|. ..+.++.|+++.|++++.||.|++||.+
T Consensus 255 tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 255 SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred EEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 99999999999965 4566676553 4667888899999999999999999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.8e-31 Score=254.33 Aligned_cols=262 Identities=19% Similarity=0.309 Sum_probs=216.0
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEEe--------------ecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCC
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKDL--------------QGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD 281 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------------~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~ 281 (552)
+...+.++.++++++.++++. ++.+++|++ .+|.+.|++++|+ +++|++|+.||+|++||+..
T Consensus 50 H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~ 128 (337)
T d1gxra_ 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC
T ss_pred CCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccc
Confidence 345688999999999999986 789999984 3688999999999 89999999999999999874
Q ss_pred --CeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEee
Q 008820 282 --FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS 359 (552)
Q Consensus 282 --~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs 359 (552)
++....+..|...+.+++|+|++ .++++++.|+.|++|++.+..... ....+.. . ....+++++++.+++|+
T Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~-~-v~~l~~s~~~~~~~~~~ 202 (337)
T d1gxra_ 129 PTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVR---QFQGHTD-G-ASCIDISNDGTKLWTGG 202 (337)
T ss_dssp C--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEE---EECCCSS-C-EEEEEECTTSSEEEEEE
T ss_pred ccccccccccccccccccccccccc-cccccccccccccccccccccccc---ccccccc-c-ccccccccccccccccc
Confidence 45677888999999999999865 478999999999999998654322 2222222 1 22346788899999999
Q ss_pred CCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCC
Q 008820 360 GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQH 437 (552)
Q Consensus 360 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 437 (552)
.|+.+++||+++++.+..+. |...|.+++|+ +..+++++.|+.+++||+++++...... +...+.. ++|+|+++
T Consensus 203 ~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~i~~-v~~s~~g~ 278 (337)
T d1gxra_ 203 LDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL--HESCVLS-LKFAYCGK 278 (337)
T ss_dssp TTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC--CSSCEEE-EEECTTSS
T ss_pred ccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccccccc--cccccce-EEECCCCC
Confidence 99999999999999887775 88899999998 4499999999999999999887654432 3445555 69999999
Q ss_pred EEEEEECCCcEEEEeCCc--ceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEec
Q 008820 438 TLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQEL 491 (552)
Q Consensus 438 ~l~~g~~dg~i~iwd~~~--~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~ 491 (552)
+|++|+.||.|++||... .+.. ..|...|.+++| ++++|++|+.||+|++||+
T Consensus 279 ~l~s~s~Dg~i~iwd~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 279 WFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCCEEEE-ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 999999999999999654 3333 457889999887 8999999999999999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.6e-31 Score=260.31 Aligned_cols=280 Identities=14% Similarity=0.113 Sum_probs=209.1
Q ss_pred CccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCe--EEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCC
Q 008820 251 HRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFS--HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPL 326 (552)
Q Consensus 251 H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 326 (552)
+.++|+|++|+ +++||+|+.||.|+|||..+++ .+..+++|.++|.+++|+|+++ +|++|+.|++|++||+.+..
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~-~l~s~s~D~~i~vWd~~~~~ 84 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSN-RIVTCGTDRNAYVWTLKGRT 84 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTT-EEEEEETTSCEEEEEEETTE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCC-EEEEEECCCeEEEEeecccc
Confidence 35789999999 8999999999999999998775 6778899999999999999665 78999999999999997653
Q ss_pred CCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCce----eEEecCCCCCeEEEEEe-C-CEEEEEeC
Q 008820 327 GHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTL----SCTMSGHKSAVSTLAVC-N-GVLYSGSR 400 (552)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~~-~-~~l~s~~~ 400 (552)
..... ....+.. .....+++|+++.|++|+.|+.|++|++..... ......|...|.+++|+ + .+|++|+.
T Consensus 85 ~~~~~-~~~~~~~--~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~ 161 (371)
T d1k8kc_ 85 WKPTL-VILRINR--AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 161 (371)
T ss_dssp EEEEE-ECCCCSS--CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred ccccc-ccccccc--cccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceecccc
Confidence 22222 1222221 123457888999999999999999999876543 33446789999999999 3 39999999
Q ss_pred CCcEEEEECCCCc------------------eeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeee
Q 008820 401 DGTIRLWSLSDHS------------------LLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSM 460 (552)
Q Consensus 401 dg~i~iwd~~~~~------------------~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~ 460 (552)
|++|++||..... .+..... +...+.. ++|+|++++|++++.|+.|++||.. ..+..+
T Consensus 162 D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~-~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~ 239 (371)
T d1k8kc_ 162 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS-SCGWVHG-VCFSANGSRVAWVSHDSTVCLADADKKMAVATL 239 (371)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-CSSCEEE-EEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred CcEEEEEeeccCccccccccccccccccceeeeeeccC-ccCcEEE-EEeecccccccccccCCcceEEeeecccceeee
Confidence 9999999986532 2222222 2344444 6999999999999999999999964 467788
Q ss_pred ecccceEEEEEe--cCCEEEEEeCCCeEEEEecCC--Ceeeeeec--c--------------------------------
Q 008820 461 QTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAG--DEFEEDVI--P-------------------------------- 502 (552)
Q Consensus 461 ~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~--~~~~~~~~--~-------------------------------- 502 (552)
..|..+|.++.| ++++|++| .|+.+++|+... ........ .
T Consensus 240 ~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (371)
T d1k8kc_ 240 ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGA 318 (371)
T ss_dssp ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------C
T ss_pred ecccccceeeeecCCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccc
Confidence 899999999887 77766655 477777765432 22111000 0
Q ss_pred CCCcccCcceEEEEEeC------CeEEEEeCCCeEEEEEec
Q 008820 503 TGAIPCGSVITALLYWQ------GKLFVGCADRTVKIALCN 537 (552)
Q Consensus 503 ~~~~~~~~~v~~l~~~~------~~l~s~s~Dg~v~iw~~~ 537 (552)
.....|...|+++++.+ ..++|++.||.|+||+++
T Consensus 319 ~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~ 359 (371)
T d1k8kc_ 319 GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359 (371)
T ss_dssp CCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred eecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCC
Confidence 00002456788988863 248899999999999996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-30 Score=257.18 Aligned_cols=267 Identities=19% Similarity=0.326 Sum_probs=213.7
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEEee---------------------------cCccceEEEEEc--CCEEEEE
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKDLQ---------------------------GHRDCVTGLAVG--GGFLFSS 268 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------------------------~H~~~V~~l~~s--~~~l~s~ 268 (552)
+...+.++.++++++.++++. ++.+++|++. +|...|++++|+ +++|++|
T Consensus 61 H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~ 139 (388)
T d1erja_ 61 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 139 (388)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec
Confidence 345688999999999998885 8899999752 477889999999 8999999
Q ss_pred eCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEE
Q 008820 269 SFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHAL 348 (552)
Q Consensus 269 s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (552)
+.||+|++||..+++.+..+.+|...|.++++++++. .+++++.++.+++||..+....... ..+. ....+...
T Consensus 140 ~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~---~~~~--~~~~~~~~ 213 (388)
T d1erja_ 140 AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTL---SIED--GVTTVAVS 213 (388)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEE---ECSS--CEEEEEEC
T ss_pred ccccccccccccccccccccccccccccccccccccc-cccccccceeeeeeecccccccccc---cccc--cccccccc
Confidence 9999999999999999999999999999999998654 7789999999999999864322211 1111 22233344
Q ss_pred eeCCCEEEEeeCCCcEEEEECCCCceeEEe-------cCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEE-
Q 008820 349 TTSGRYLYTGSGDRTIKAWSLLDGTLSCTM-------SGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVL- 418 (552)
Q Consensus 349 ~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-------~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~- 418 (552)
..++++|++|+.||.|++||.+++.....+ .+|...|++++|+ +.+|++++.||.|++||++++......
T Consensus 214 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 293 (388)
T d1erja_ 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293 (388)
T ss_dssp STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred CCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccc
Confidence 557889999999999999999998877655 4688999999999 349999999999999999876533221
Q ss_pred ----------ecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEe--------cCCEEE
Q 008820 419 ----------EEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--------EGKWLF 478 (552)
Q Consensus 419 ----------~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--------~~~~l~ 478 (552)
...+...+.+ ++++|++++|++|+.||.|++||.. +++..+++|.+.|.++.+ ++.+|+
T Consensus 294 ~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~ 372 (388)
T d1erja_ 294 TPNSGTCEVTYIGHKDFVLS-VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372 (388)
T ss_dssp -----CEEEEEECCSSCEEE-EEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEE
T ss_pred cccccceeeecccccceEEE-EEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEE
Confidence 1122344444 6899999999999999999999965 577889999999998864 678999
Q ss_pred EEeCCCeEEEEecC
Q 008820 479 TGGWDKTVSVQELA 492 (552)
Q Consensus 479 sgs~dg~i~iwd~~ 492 (552)
||+.||+|++||++
T Consensus 373 s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 373 TGSGDCKARIWKYK 386 (388)
T ss_dssp EEETTSEEEEEEEE
T ss_pred EEeCCCEEEEEeee
Confidence 99999999999984
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.98 E-value=1.2e-29 Score=242.50 Aligned_cols=265 Identities=22% Similarity=0.405 Sum_probs=230.9
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEE
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVH 286 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~ 286 (552)
+...+..+.+++.+..++++..|+.+++|+ +.+|.+.|.+++|+ +.++++++.++.+.+|+....+...
T Consensus 16 H~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (317)
T d1vyhc1 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR 95 (317)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE
T ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccccccc
Confidence 345688899999999999999999999997 56899999999999 8999999999999999999999999
Q ss_pred EEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEE
Q 008820 287 TFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKA 366 (552)
Q Consensus 287 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~i 366 (552)
.+.+|...+.++.|++++. .+++++.|+.+++||++++.....+ ..+.. .....++++++++|++++.|+.|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~l~~~~~d~~v~~ 169 (317)
T d1vyhc1 96 TMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTF---TGHRE--WVRMVRPNQDGTLIASCSNDQTVRV 169 (317)
T ss_dssp CCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEE---ECCSS--CEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ccccccccceeeeccCCCc-eEEeeccCcceeEeecccceeeeEE---ccCCC--cceeeecccCCCEEEEEeCCCeEEE
Confidence 8999999999999999665 6789999999999999876543333 22222 2234577888999999999999999
Q ss_pred EECCCCceeEEecCCCCCeEEEEEeC----------------------CEEEEEeCCCcEEEEECCCCceeEEEecCCCC
Q 008820 367 WSLLDGTLSCTMSGHKSAVSTLAVCN----------------------GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSG 424 (552)
Q Consensus 367 wd~~~~~~~~~~~~h~~~v~~l~~~~----------------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 424 (552)
|+..+++....+.+|...+.++.+++ ..+++++.|+.|++||+++++++..+..+. .
T Consensus 170 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-~ 248 (317)
T d1vyhc1 170 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD-N 248 (317)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS-S
T ss_pred EeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCC-C
Confidence 99999999999999999999998851 268999999999999999999999998763 4
Q ss_pred ceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEe
Q 008820 425 AVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQE 490 (552)
Q Consensus 425 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd 490 (552)
.+.. ++++|++++|++|+.||.|++||+. +++..+.+|...|++++| ++++|++|+.||+|++||
T Consensus 249 ~v~~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 249 WVRG-VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CEEE-EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CEEE-EEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 4554 6999999999999999999999964 578899999999999987 789999999999999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=7.9e-30 Score=241.70 Aligned_cols=265 Identities=17% Similarity=0.175 Sum_probs=206.2
Q ss_pred EEEEEeecCccceEEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q 008820 243 VKFKDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (552)
Q Consensus 243 ~~~~~l~~H~~~V~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 322 (552)
..+++|+||.++|++++|+. |+||+.||+|++||+.++ ..+|...|.+++++++. .+++++.|+++++|++
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~--~~~s~s~D~~v~~w~~ 74 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP--LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ--EYSSISWDDTLKVNGI 74 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT--TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT--CCEEEETTTEEEETTE
T ss_pred ceeEEECCCCCceEEEEECc--EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC--eEEEEeeccccccccc
Confidence 45788999999999999986 999999999999998764 36899999999997643 4689999999999997
Q ss_pred CCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEeCCC
Q 008820 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDG 402 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg 402 (552)
....... .....++.+++..++++ .++.+.+|+..+++.+..+.. ...+.++...++.+++++.|+
T Consensus 75 ~~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~ 140 (287)
T d1pgua2 75 TKHEFGS------------QPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRL-NSPGSAVSLSQNYVAVGLEEG 140 (287)
T ss_dssp EEEECSS------------CEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEEC-SSCEEEEEECSSEEEEEETTT
T ss_pred ccccccc------------ceeeeeeccCCceEEEe-ecccceeeeccceeeeeeccc-cceeeeeeccCcceeeecccc
Confidence 6432111 11233556666555554 566799999999998888774 455666666677777777765
Q ss_pred -cEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcce---eeeecccceEEEEEe------
Q 008820 403 -TIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFM---KSMQTHKGSVFAVFL------ 472 (552)
Q Consensus 403 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~---~~~~~h~~~v~~v~~------ 472 (552)
.+++|++...+....+...+...+.+ ++|+|++.+|++|+.||.|++||..... ..+.+|...|.+++|
T Consensus 141 ~~v~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 219 (287)
T d1pgua2 141 NTIQVFKLSDLEVSFDLKTPLRAKPSY-ISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG 219 (287)
T ss_dssp SCEEEEETTEEEEEEECSSCCSSCEEE-EEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC--
T ss_pred ceeeeeeccccceeeeeeeccCCceeE-EEeccCccccccccccccccceeecccccccccccccccccceeeecccccc
Confidence 79999998777766666655555555 6999999999999999999999976532 346789999999875
Q ss_pred ------cCCEEEEEeCCCeEEEEecCCCe-eeeeeccCCCcccCcceEEEEEeC-CeEEEEeCCCeEEEEEe
Q 008820 473 ------EGKWLFTGGWDKTVSVQELAGDE-FEEDVIPTGAIPCGSVITALLYWQ-GKLFVGCADRTVKIALC 536 (552)
Q Consensus 473 ------~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~l~~~~-~~l~s~s~Dg~v~iw~~ 536 (552)
++.+|++|+.|++|++||++... ....... |...|++++|++ +.|++++.||.|++|++
T Consensus 220 ~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~-----h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA-----HKDGVNNLLWETPSTLVSSGADACIKRWNV 286 (287)
T ss_dssp ----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS-----STTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred cccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCC-----CCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence 46789999999999999997643 2222221 366799999984 57999999999999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=9e-29 Score=243.72 Aligned_cols=268 Identities=14% Similarity=0.089 Sum_probs=207.0
Q ss_pred cccceeeecCcceEEEeeCCCeEEEEE-----------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEE--
Q 008820 221 DIDQARAAGGVKDLVNGLSKGNVKFKD-----------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHV-- 285 (552)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~-- 285 (552)
++.+..+++++..++++..++.+.+|+ |++|.++|++++|+ +++|++|+.|++|+|||+.++...
T Consensus 9 pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~ 88 (371)
T d1k8kc_ 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT 88 (371)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccc
Confidence 477788888888888888888887776 56899999999998 899999999999999999877654
Q ss_pred EEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEE
Q 008820 286 HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIK 365 (552)
Q Consensus 286 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~ 365 (552)
..+.+|...|.+++|+|++. .+++++.|+++++|+++................... ...+++|++++|++|+.|++|+
T Consensus 89 ~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v-~~v~~~p~~~~l~s~s~D~~v~ 166 (371)
T d1k8kc_ 89 LVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV-LSLDWHPNSVLLAAGSCDFKCR 166 (371)
T ss_dssp EECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE-EEEEECTTSSEEEEEETTSCEE
T ss_pred cccccccccccccccccccc-cceeecccCcceeeeeeccccccccccccccccccc-ccccccccccceeccccCcEEE
Confidence 44567899999999999665 789999999999999886554333322222221122 2346788999999999999999
Q ss_pred EEECCCC------------------ceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCc
Q 008820 366 AWSLLDG------------------TLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGA 425 (552)
Q Consensus 366 iwd~~~~------------------~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 425 (552)
+||.... +......+|...|.+++|+ +++|++++.|+.|++||+.+++.+..+..+. ..
T Consensus 167 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~ 245 (371)
T d1k8kc_ 167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET-LP 245 (371)
T ss_dssp EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS-CC
T ss_pred EEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeeccc-cc
Confidence 9998643 3456667899999999999 3499999999999999999999999888764 44
Q ss_pred eEEEEEEcCCCCEEEEEECCCcEEEEe--CCcce-----------------------------------------eeeec
Q 008820 426 VSSVLSLTAVQHTLVVSHESGSIKVWR--NDKFM-----------------------------------------KSMQT 462 (552)
Q Consensus 426 ~~~~~~~s~~~~~l~~g~~dg~i~iwd--~~~~~-----------------------------------------~~~~~ 462 (552)
+.+ ++|+|++.++++| .|+.+++|+ ..... .....
T Consensus 246 v~s-~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (371)
T d1k8kc_ 246 LLA-VTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL 323 (371)
T ss_dssp EEE-EEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSS
T ss_pred cee-eeecCCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceeccc
Confidence 555 6899999877765 477776664 21000 00023
Q ss_pred ccceEEEEEe------cCCEEEEEeCCCeEEEEecCC
Q 008820 463 HKGSVFAVFL------EGKWLFTGGWDKTVSVQELAG 493 (552)
Q Consensus 463 h~~~v~~v~~------~~~~l~sgs~dg~i~iwd~~~ 493 (552)
|.+.|.++.+ ....++|+|.||.|++||+++
T Consensus 324 H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 324 HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp SSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 8888998876 124699999999999999965
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.5e-29 Score=241.14 Aligned_cols=279 Identities=15% Similarity=0.161 Sum_probs=209.0
Q ss_pred ceEEEEEc--CCEEEEEeCCC-cEEEEeCCCC--eEEEEEeCCC-CCeEEEEEecC-CCCEEEEEcCCCcEEEEeCCCCC
Q 008820 254 CVTGLAVG--GGFLFSSSFDK-SIHVWSLKDF--SHVHTFKGHD-HKVMAVVYVDE-DQPLCISGDSGGGIFVWSFSFPL 326 (552)
Q Consensus 254 ~V~~l~~s--~~~l~s~s~dg-~I~iwd~~~~--~~~~~~~~h~-~~v~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~~ 326 (552)
.+++++|+ ++.|+.++.+. .|+.||.... ..+..+.+|. ..|++++|+|+ ++.++++|+.||+|++||+....
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence 45788898 88888886554 3566765433 4467778875 67999999985 45788999999999999997654
Q ss_pred CCcccccc-----ccCCCceeeeEEEEeeCCCEEEEee--CCCcEEEEECCCCceeEEecCCCCCeEEEEEe-C-C-EEE
Q 008820 327 GHEPLKKW-----NEEKDWRYSGIHALTTSGRYLYTGS--GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-N-G-VLY 396 (552)
Q Consensus 327 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~sgs--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~-~-~l~ 396 (552)
........ ..+.. .....+++++++++++++ .++.+++|+.++++.+..+.+|...|++++|+ + . .++
T Consensus 99 ~~~~~~~~~~~~~~~~~~--~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 176 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAG--PISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSM 176 (325)
T ss_dssp GGTEEEEEEEEEEECCSS--CEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEE
T ss_pred ceeeeecccccccccccC--cEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEE
Confidence 43332221 11111 112346778888877765 46789999999999999999999999999998 2 2 688
Q ss_pred EEeCCCcEEEEECCCCceeEEEecCC--CCceEEEEEEcCC-CCEEEEEECCCcEEEEeCC--cceeeeecccceE----
Q 008820 397 SGSRDGTIRLWSLSDHSLLTVLEEDS--SGAVSSVLSLTAV-QHTLVVSHESGSIKVWRND--KFMKSMQTHKGSV---- 467 (552)
Q Consensus 397 s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~s~~-~~~l~~g~~dg~i~iwd~~--~~~~~~~~h~~~v---- 467 (552)
+++.|+.+++||....+.......+. ...+.+ ++|+|+ +.++++++.||.|++||.+ +.+..+.+|..++
T Consensus 177 ~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~-v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~ 255 (325)
T d1pgua1 177 TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRD-VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 255 (325)
T ss_dssp EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEE-EEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCE
T ss_pred EeecccccccccccccccceecccccCCCCccEE-eeeccccceeccccccccceeeeeeccccccccccccccccccce
Confidence 99999999999999888777665432 333444 689996 6889999999999999965 4667788777655
Q ss_pred EEEEe-cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEe-CCeEEEEeCCCeEEEEEe
Q 008820 468 FAVFL-EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-QGKLFVGCADRTVKIALC 536 (552)
Q Consensus 468 ~~v~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~l~s~s~Dg~v~iw~~ 536 (552)
.++.+ ++++|++++.|+.|++||+++++....+....... .....++.+. ++.|++|+.||.|++||+
T Consensus 256 ~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL-GNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCG-GGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred eeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcc-cCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 55554 89999999999999999999988776655443211 2223345555 467999999999999995
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=4.4e-28 Score=234.55 Aligned_cols=267 Identities=18% Similarity=0.276 Sum_probs=220.0
Q ss_pred CCCccccceeeecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCC----
Q 008820 217 SDGADIDQARAAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKD---- 281 (552)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~---- 281 (552)
.+...+..+.+++.+..++++..++.+++|+ +.+|..+|++++|+ ++++++|+.|+.+++|+...
T Consensus 53 GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~ 132 (340)
T d1tbga_ 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN 132 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSC
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccc
Confidence 3445688999999999999999999999997 56799999999999 89999999999999999764
Q ss_pred CeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCC
Q 008820 282 FSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGD 361 (552)
Q Consensus 282 ~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d 361 (552)
.+....+.+|............ ..+.....|.....|............. .. .......+.+.+..+++|+.|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~d 205 (340)
T d1tbga_ 133 VRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTTFTG---HT--GDVMSLSLAPDTRLFVSGACD 205 (340)
T ss_dssp CCEEEEECCCSSCEEEEEEEET--TEEEEEETTTEEEEEETTTTEEEEEEEC---CS--SCEEEEEECTTSSEEEEEETT
T ss_pred cccceecccccccccccccccc--cccccccccccccccccccccccccccc---cc--eeEeeeccccccceeEEeecC
Confidence 3456778888887777666543 3667888899999998764332221111 11 112234566677899999999
Q ss_pred CcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEE
Q 008820 362 RTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTL 439 (552)
Q Consensus 362 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 439 (552)
+.|++||+++++++..+.+|...|++++|+ +++|++|+.|+.|++||++.......+...........++|+|++++|
T Consensus 206 ~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 285 (340)
T d1tbga_ 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285 (340)
T ss_dssp TEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEE
T ss_pred ceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEE
Confidence 999999999999999999999999999999 349999999999999999999888777654444334447999999999
Q ss_pred EEEECCCcEEEEeCC--cceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEe
Q 008820 440 VVSHESGSIKVWRND--KFMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQE 490 (552)
Q Consensus 440 ~~g~~dg~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd 490 (552)
++|+.||.|++||.. +.+..+.+|..+|.+++| ++.+|++|+.||+|++||
T Consensus 286 ~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 999999999999964 578889999999999987 889999999999999997
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.2e-28 Score=232.63 Aligned_cols=252 Identities=24% Similarity=0.419 Sum_probs=211.8
Q ss_pred ecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEE
Q 008820 228 AGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAV 298 (552)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v 298 (552)
+.+++.++++..|+.+++|+ +.+|.++|++++|++++|++|+.|++|++|++..+........+.......
T Consensus 22 ~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~ 101 (293)
T d1p22a2 22 QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 101 (293)
T ss_dssp ECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEE
T ss_pred EEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeecccccccccccccccccccccccccccccccc
Confidence 34678899999999999997 568999999999999999999999999999999998888777665554443
Q ss_pred EEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEe
Q 008820 299 VYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM 378 (552)
Q Consensus 299 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~ 378 (552)
.+ ....++++..++.+.+|+...............+. ..+....+.+..+++++.|+.|++||.++++.+..+
T Consensus 102 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~ 174 (293)
T d1p22a2 102 --RF-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR----AAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL 174 (293)
T ss_dssp --EC-CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCS----SCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred --cc-cccceeecccccceeEeeccccccccccccccccc----cccccceecccccccccCCCceeeecCCCCcEEEEE
Confidence 23 33467899999999999998765544444433332 235566777889999999999999999999999999
Q ss_pred cCCCCCeEEEEEeCCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC----
Q 008820 379 SGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND---- 454 (552)
Q Consensus 379 ~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~---- 454 (552)
.++...+..+.+++..+++++.||+|++||+++.+.+.....+.. . +..+++++.+|++|+.||.|++||+.
T Consensus 175 ~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~---v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~ 250 (293)
T d1p22a2 175 NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-L---VRCIRFDNKRIVSGAYDGKIKVWDLVAALD 250 (293)
T ss_dssp ECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSS-C---EEEEECCSSEEEEEETTSCEEEEEHHHHTS
T ss_pred cccccccccccCCCCeEEEecCCCEEEEEecccceeeeeecccce-e---eeeccccceEEEEEcCCCEEEEEECCCCcc
Confidence 999999999999989999999999999999999999888876532 2 24677889999999999999999842
Q ss_pred -------cceeeeecccceEEEEEecCCEEEEEeCCCeEEEEe
Q 008820 455 -------KFMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQE 490 (552)
Q Consensus 455 -------~~~~~~~~h~~~v~~v~~~~~~l~sgs~dg~i~iwd 490 (552)
..+..+.+|.+.|++++|++.+|+|||.||+|++||
T Consensus 251 ~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 251 PRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp TTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred ccccCCceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence 246778899999999999999999999999999998
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.7e-29 Score=240.75 Aligned_cols=285 Identities=14% Similarity=0.095 Sum_probs=209.7
Q ss_pred EEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeE---EEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEE
Q 008820 245 FKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSH---VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFV 319 (552)
Q Consensus 245 ~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~---~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~v 319 (552)
+.-.++|++.|++|+|+ +++|++|+.||+|+|||+.++.. +....+|.++|.+++|+|+++.++++|+.||.|++
T Consensus 4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~ 83 (342)
T d1yfqa_ 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceee
Confidence 44578999999999999 99999999999999999876543 23334699999999999988889999999999999
Q ss_pred EeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCcee----EEecCCC--CCeEEEEEe--
Q 008820 320 WSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLS----CTMSGHK--SAVSTLAVC-- 391 (552)
Q Consensus 320 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~----~~~~~h~--~~v~~l~~~-- 391 (552)
|++.............. .........+++..+++++.|+.+++||++++... .....+. .....+.+.
T Consensus 84 w~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (342)
T d1yfqa_ 84 VDLIGSPSFQALTNNEA----NLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN 159 (342)
T ss_dssp ECSSSSSSEEECBSCCC----CSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred eeccccccccccccccc----ccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeecc
Confidence 99986544333322211 12234456677889999999999999998654332 2222222 122333333
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEE--EecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcc-------------
Q 008820 392 NGVLYSGSRDGTIRLWSLSDHSLLTV--LEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF------------- 456 (552)
Q Consensus 392 ~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~------------- 456 (552)
++.+++++.|+.|++||++..+.... ..............++.++..+++++.||.+.+|+....
T Consensus 160 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~ 239 (342)
T d1yfqa_ 160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred CCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceee
Confidence 66999999999999999987664322 222223344444566778889999999999999974311
Q ss_pred ----eeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCeEEEEeCCCe
Q 008820 457 ----MKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRT 530 (552)
Q Consensus 457 ----~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~ 530 (552)
......|...+.+++| ++++|++|+.||.|++||+++++....+... +...+.+++++++.+++|+.|+.
T Consensus 240 ~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~----~~~~~~~~s~~~~~l~~a~sdd~ 315 (342)
T d1yfqa_ 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF----NEDSVVKIACSDNILCLATSDDT 315 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC----SSSEEEEEEECSSEEEEEEECTH
T ss_pred eeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC----CCCEEEEEEeCCCEEEEEEcCCc
Confidence 1112356678888876 8999999999999999999998776654432 14457777777888999999999
Q ss_pred EEEEEec
Q 008820 531 VKIALCN 537 (552)
Q Consensus 531 v~iw~~~ 537 (552)
+++|..-
T Consensus 316 ~~~~~~~ 322 (342)
T d1yfqa_ 316 FKTNAAI 322 (342)
T ss_dssp HHHCSSS
T ss_pred EEEeeee
Confidence 9888764
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.2e-27 Score=227.29 Aligned_cols=259 Identities=22% Similarity=0.354 Sum_probs=199.4
Q ss_pred eecCcceEEEeeCCCeEEEEE---------eecCccceEEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEE
Q 008820 227 AAGGVKDLVNGLSKGNVKFKD---------LQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMA 297 (552)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~---------l~~H~~~V~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~ 297 (552)
++..++.++++..|+.+++|+ +.+|.+.|.+++|++++|++|+.|+++++|+............+...+..
T Consensus 23 ~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (342)
T d2ovrb2 23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC 102 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceecccccccccccccceecccccceeEee
Confidence 344567899999999999997 56899999999999889999999999999999877666555544444433
Q ss_pred EEEecC-------------------------------------CCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCc
Q 008820 298 VVYVDE-------------------------------------DQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDW 340 (552)
Q Consensus 298 v~~~~~-------------------------------------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 340 (552)
....+. ....+++++.|+.|++||....... ..+..+
T Consensus 103 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~---~~~~~~--- 176 (342)
T d2ovrb2 103 MHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCL---HTLQGH--- 176 (342)
T ss_dssp EEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEE---EEECCC---
T ss_pred eecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceee---EEEcCc---
Confidence 322111 1223455666666666666543221 112221
Q ss_pred eeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEeCCCcEEEEECCCCceeEEEec
Q 008820 341 RYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEE 420 (552)
Q Consensus 341 ~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 420 (552)
...+..+.+++..+++|+.||.|++||++.++++..+.+|...+.++.++++++++++.|+.|++||+...+....+..
T Consensus 177 -~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~ 255 (342)
T d2ovrb2 177 -TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG 255 (342)
T ss_dssp -SSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECS
T ss_pred -ccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccc
Confidence 2234567788999999999999999999999999999999999999999999999999999999999999988888876
Q ss_pred CCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC--cceeee-----ecccceEEEEEe--cCCEEEEEeCCCe----EE
Q 008820 421 DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND--KFMKSM-----QTHKGSVFAVFL--EGKWLFTGGWDKT----VS 487 (552)
Q Consensus 421 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~-----~~h~~~v~~v~~--~~~~l~sgs~dg~----i~ 487 (552)
+.. ....+.+++++++++++|+.||+|++||++ +.++.+ .+|...|.++++ ++.+|++|+.||+ |+
T Consensus 256 ~~~-~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~ 334 (342)
T d2ovrb2 256 PNK-HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL 334 (342)
T ss_dssp TTS-CSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEE
T ss_pred cce-eeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEE
Confidence 533 233335677778899999999999999965 445554 357889999987 7789999999985 99
Q ss_pred EEecCC
Q 008820 488 VQELAG 493 (552)
Q Consensus 488 iwd~~~ 493 (552)
+||++.
T Consensus 335 ~~Df~~ 340 (342)
T d2ovrb2 335 VLDFDV 340 (342)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 999864
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=4.9e-27 Score=233.10 Aligned_cols=290 Identities=15% Similarity=0.179 Sum_probs=204.9
Q ss_pred EEeecCccceEEEEEcCCEEEEEeCCCcEEEEeCCCCe------EEEEEeCCCCCeEEEEEe---c---CCCCEEEEEcC
Q 008820 246 KDLQGHRDCVTGLAVGGGFLFSSSFDKSIHVWSLKDFS------HVHTFKGHDHKVMAVVYV---D---EDQPLCISGDS 313 (552)
Q Consensus 246 ~~l~~H~~~V~~l~~s~~~l~s~s~dg~I~iwd~~~~~------~~~~~~~h~~~v~~v~~~---~---~~~~~l~s~~~ 313 (552)
...++|.+.|.++++++++++|||.|++|+|||..+.. .......|...+..+... + ....++++++.
T Consensus 8 ~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 87 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF 87 (393)
T ss_dssp EESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred ecCCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence 34689999999999999999999999999999976543 233334465554433322 1 22346789999
Q ss_pred CCcEEEEeCCCCCCCccccccc-----cCCCceeeeEEEEeeC-----CCEEEEeeCCCcEEEEECCCCc----------
Q 008820 314 GGGIFVWSFSFPLGHEPLKKWN-----EEKDWRYSGIHALTTS-----GRYLYTGSGDRTIKAWSLLDGT---------- 373 (552)
Q Consensus 314 dg~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-----~~~l~sgs~dg~i~iwd~~~~~---------- 373 (552)
||.|++|++............. ...........++.++ +.++++++.||.+++||+....
T Consensus 88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 167 (393)
T d1sq9a_ 88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 167 (393)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence 9999999987554333222111 0000111112234433 4589999999999999984321
Q ss_pred --------eeEEecCCCCCeEEEEEe-CCEEEEEeCCCcEEEEECCCCceeEEEecC-----CCCceEEEEEEcCCCCEE
Q 008820 374 --------LSCTMSGHKSAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHSLLTVLEED-----SSGAVSSVLSLTAVQHTL 439 (552)
Q Consensus 374 --------~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~l 439 (552)
.......+...+++++|+ +++|++|+.|++|++||+++++++..+... +...+.+ ++|+|++++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~-l~~spdg~~l 246 (393)
T d1sq9a_ 168 SPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS-VKFSPQGSLL 246 (393)
T ss_dssp CCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE-EEECSSTTEE
T ss_pred ccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEE-ccccccccee
Confidence 111123456678999999 569999999999999999999988776542 3445555 6999999999
Q ss_pred EEEECCCc---EEEEeCCc--ceee-------------eecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeee
Q 008820 440 VVSHESGS---IKVWRNDK--FMKS-------------MQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEED 499 (552)
Q Consensus 440 ~~g~~dg~---i~iwd~~~--~~~~-------------~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~ 499 (552)
++|+.|++ |++||... .+.. +.+|...|++++| ++++|+|||.|++|++||+.++++...
T Consensus 247 ~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~ 326 (393)
T d1sq9a_ 247 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT 326 (393)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred eeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEE
Confidence 99999875 89999652 3333 3579999999987 899999999999999999999887766
Q ss_pred eccCCC----------------cccCcceEEEEEeC------------CeEEEEeCCCeEEEEEe
Q 008820 500 VIPTGA----------------IPCGSVITALLYWQ------------GKLFVGCADRTVKIALC 536 (552)
Q Consensus 500 ~~~~~~----------------~~~~~~v~~l~~~~------------~~l~s~s~Dg~v~iw~~ 536 (552)
+..+.. .-....+.++.|.+ ..+++++.|+.|++|.-
T Consensus 327 l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~~ 391 (393)
T d1sq9a_ 327 LNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 391 (393)
T ss_dssp EECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred ECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEeC
Confidence 543211 01123466676653 23889999999999974
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=4.5e-26 Score=219.87 Aligned_cols=242 Identities=16% Similarity=0.166 Sum_probs=181.6
Q ss_pred EEEeecC-ccceEEEEEc----CCEEEEEeCCCcEEEEeCCCCe--------EEEEEeCCCCCeEEEEEecCCCCEEEEE
Q 008820 245 FKDLQGH-RDCVTGLAVG----GGFLFSSSFDKSIHVWSLKDFS--------HVHTFKGHDHKVMAVVYVDEDQPLCISG 311 (552)
Q Consensus 245 ~~~l~~H-~~~V~~l~~s----~~~l~s~s~dg~I~iwd~~~~~--------~~~~~~~h~~~v~~v~~~~~~~~~l~s~ 311 (552)
+..+.+| ...|++++|+ +.+|++|+.||+|+|||+..++ ....+..|.++|.+++|++++..+++++
T Consensus 55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 134 (325)
T d1pgua1 55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 134 (325)
T ss_dssp EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceee
Confidence 4456777 4689999996 6799999999999999986432 2234567999999999999877655444
Q ss_pred -cCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCC-EEEEeeCCCcEEEEECCCCceeEEe---cCCCCCeE
Q 008820 312 -DSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTM---SGHKSAVS 386 (552)
Q Consensus 312 -~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~---~~h~~~v~ 386 (552)
+.++.+++|+.+++..... +..+.. .. ...++++++. .+++++.|+.+++||....+....+ ..|...|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~---~~~h~~-~v-~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~ 209 (325)
T d1pgua1 135 EGRDNFGVFISWDSGNSLGE---VSGHSQ-RI-NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR 209 (325)
T ss_dssp CCSSCSEEEEETTTCCEEEE---CCSCSS-CE-EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEE
T ss_pred ccccceEEEEeeccccccee---eeeccc-cc-ccccccccccceEEEeecccccccccccccccceecccccCCCCccE
Confidence 3578899999986643333 333322 12 2246777766 5788999999999999888776665 45778899
Q ss_pred EEEEeC---CEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEE-cCCCCEEEEEECCCcEEEEeCC--cceeee
Q 008820 387 TLAVCN---GVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSL-TAVQHTLVVSHESGSIKVWRND--KFMKSM 460 (552)
Q Consensus 387 ~l~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~g~~dg~i~iwd~~--~~~~~~ 460 (552)
+++|++ .++++++.|+.|++||+++++.+..+..+.......+.+. .+++++|++++.|+.|+|||+. ++++.+
T Consensus 210 ~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~ 289 (325)
T d1pgua1 210 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW 289 (325)
T ss_dssp EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence 999982 3899999999999999999999999887644332221222 2688999999999999999965 466666
Q ss_pred ecccce----EEEEEe-cCCEEEEEeCCCeEEEEec
Q 008820 461 QTHKGS----VFAVFL-EGKWLFTGGWDKTVSVQEL 491 (552)
Q Consensus 461 ~~h~~~----v~~v~~-~~~~l~sgs~dg~i~iwd~ 491 (552)
..|... ..++.+ .+.+|++++.||.|++||+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 290 TLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp ECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 655432 334555 4568999999999999996
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=8e-27 Score=222.08 Aligned_cols=263 Identities=15% Similarity=0.199 Sum_probs=200.4
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEEe----------ecCccceEEEEEc-CCEEEEEeCCCcEEEEeCCCCeE--
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKDL----------QGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSH-- 284 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----------~~H~~~V~~l~~s-~~~l~s~s~dg~I~iwd~~~~~~-- 284 (552)
+...+.++.++++++.++++..++.+++|++ .+|.+.|++++|+ ...+++++.|+.+++|+......
T Consensus 11 H~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~ 90 (299)
T d1nr0a2 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDS 90 (299)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCT
T ss_pred CCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCCccccc
Confidence 4456889999999999999999999999984 4699999999999 55677888899999999764321
Q ss_pred -EEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCc
Q 008820 285 -VHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT 363 (552)
Q Consensus 285 -~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~ 363 (552)
......+...+.+++|++++. +++ ++.++.+++|+.... ...... ......+++++++++++|+.||.
T Consensus 91 ~~~~~~~~~~~~~~~~~s~~g~-~~~-~~~~~~i~~~~~~~~-----~~~~~~----~~~~~~~~s~~~~~l~~g~~dg~ 159 (299)
T d1nr0a2 91 SKAVANKLSSQPLGLAVSADGD-IAV-AACYKHIAIYSHGKL-----TEVPIS----YNSSCVALSNDKQFVAVGGQDSK 159 (299)
T ss_dssp TSCCEEECSSCEEEEEECTTSS-CEE-EEESSEEEEEETTEE-----EEEECS----SCEEEEEECTTSCEEEEEETTSE
T ss_pred cccccccccccccccccccccc-ccc-ccccccccccccccc-----cccccc----ccccccccccccccccccccccc
Confidence 122345778899999999776 333 445678999985421 111111 12235678899999999999999
Q ss_pred EEEEECCCCceeE-EecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEec--CCCCceEEEEEEcCCCCE
Q 008820 364 IKAWSLLDGTLSC-TMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEE--DSSGAVSSVLSLTAVQHT 438 (552)
Q Consensus 364 i~iwd~~~~~~~~-~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~ 438 (552)
|++||+++++... ....|...|++++|+ +.++++++.|+.|++||+.++........ .+...+.+ ++|+|++++
T Consensus 160 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~s~~~~~ 238 (299)
T d1nr0a2 160 VHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVAC-VSWSPDNVR 238 (299)
T ss_dssp EEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEE-EEECTTSSE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 9999998877654 345689999999999 34999999999999999988765433321 12344555 689999999
Q ss_pred EEEEECCCcEEEEeCCcc----eeeeec-ccceEEEEEe-cCCEEEEEeCCCeEEEEecC
Q 008820 439 LVVSHESGSIKVWRNDKF----MKSMQT-HKGSVFAVFL-EGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 439 l~~g~~dg~i~iwd~~~~----~~~~~~-h~~~v~~v~~-~~~~l~sgs~dg~i~iwd~~ 492 (552)
|++|+.||.|++||+.+. ...... +...+.++.+ ++.+|++++.|++|++||+.
T Consensus 239 l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred eEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence 999999999999996542 222223 4456777665 88999999999999999984
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=6.7e-25 Score=207.37 Aligned_cols=252 Identities=15% Similarity=0.169 Sum_probs=192.5
Q ss_pred CCccccceeeecCcceEEEeeCCCeEEEEE----eecCccceEEEEEc-CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCC
Q 008820 218 DGADIDQARAAGGVKDLVNGLSKGNVKFKD----LQGHRDCVTGLAVG-GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHD 292 (552)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~H~~~V~~l~~s-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~ 292 (552)
+...+.++.+++ ++++..|+.+++|+ ..+|...|.+++++ +..+++++.|++|++|++.+. ...
T Consensus 12 H~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~-------~~~ 80 (287)
T d1pgua2 12 HNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKH-------EFG 80 (287)
T ss_dssp CSSCEEEEETTT----TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEE-------ECS
T ss_pred CCCceEEEEECc----EEEEeCCCeEEEEECCCCCCCCCCCEEEEEecCCCeEEEEeecccccccccccc-------ccc
Confidence 334566666654 89999999999986 56899999999999 888999999999999996532 134
Q ss_pred CCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCC-cEEEEECCC
Q 008820 293 HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDR-TIKAWSLLD 371 (552)
Q Consensus 293 ~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg-~i~iwd~~~ 371 (552)
..+..+++.+++. . +..+.++.+.+|+..++.....+. .. ....+++++++.+++++.|+ .+++|++..
T Consensus 81 ~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~ 150 (287)
T d1pgua2 81 SQPKVASANNDGF-T-AVLTNDDDLLILQSFTGDIIKSVR---LN-----SPGSAVSLSQNYVAVGLEEGNTIQVFKLSD 150 (287)
T ss_dssp SCEEEEEECSSSE-E-EEEETTSEEEEEETTTCCEEEEEE---CS-----SCEEEEEECSSEEEEEETTTSCEEEEETTE
T ss_pred cceeeeeeccCCc-e-EEEeecccceeeeccceeeeeecc---cc-----ceeeeeeccCcceeeeccccceeeeeeccc
Confidence 5567777776543 4 444566778899887654333222 11 12457888888888887765 799999987
Q ss_pred CceeEEec-CCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcC----------CCCE
Q 008820 372 GTLSCTMS-GHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTA----------VQHT 438 (552)
Q Consensus 372 ~~~~~~~~-~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~----------~~~~ 438 (552)
.+....+. .|...+++++|+ +.+|++|+.||.|++||+.+++........+...+.+ ++|+| ++.+
T Consensus 151 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~-~~~~p~~~~~~~~~~~~~~ 229 (287)
T d1pgua2 151 LEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINA-ISWKPAEKGANEEEIEEDL 229 (287)
T ss_dssp EEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEE-EEECCCC------CCSCCE
T ss_pred cceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccce-eeecccccccccccCCCCe
Confidence 76666554 477899999999 3499999999999999999988765544444455555 56765 4578
Q ss_pred EEEEECCCcEEEEeCCc---ceeeeecccceEEEEEe-cCCEEEEEeCCCeEEEEec
Q 008820 439 LVVSHESGSIKVWRNDK---FMKSMQTHKGSVFAVFL-EGKWLFTGGWDKTVSVQEL 491 (552)
Q Consensus 439 l~~g~~dg~i~iwd~~~---~~~~~~~h~~~v~~v~~-~~~~l~sgs~dg~i~iwd~ 491 (552)
+++|+.|++|++||+++ .+..+.+|...|+++.| ++..|++++.|+.|++||+
T Consensus 230 l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 230 VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286 (287)
T ss_dssp EEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred eEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence 99999999999999653 56667789999999987 5567999999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=5.4e-24 Score=210.89 Aligned_cols=260 Identities=15% Similarity=0.150 Sum_probs=178.2
Q ss_pred EEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcccccc---ccCCC-c-eeeeEEEEeeC---CCEEEE
Q 008820 286 HTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKW---NEEKD-W-RYSGIHALTTS---GRYLYT 357 (552)
Q Consensus 286 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~~~-~-~~~~~~~~~~~---~~~l~s 357 (552)
...++|.+.|.++++++ .++++++.|++|++||..+.....+.... ..+.. . +.........+ ...+++
T Consensus 8 ~~~~~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 84 (393)
T ss_dssp EESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred ecCCcccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence 34578999999999854 47899999999999998765433322211 11111 0 11112222222 237889
Q ss_pred eeCCCcEEEEECCCCceeE-----Ee-----cCCCCCeEEEEEe-------CCEEEEEeCCCcEEEEECCCCc-------
Q 008820 358 GSGDRTIKAWSLLDGTLSC-----TM-----SGHKSAVSTLAVC-------NGVLYSGSRDGTIRLWSLSDHS------- 413 (552)
Q Consensus 358 gs~dg~i~iwd~~~~~~~~-----~~-----~~h~~~v~~l~~~-------~~~l~s~~~dg~i~iwd~~~~~------- 413 (552)
++.||.|++|++....... .. ..+...+..+++. ..++++++.||++++||+....
T Consensus 85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~ 164 (393)
T d1sq9a_ 85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 164 (393)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence 9999999999986443211 11 1244567777776 1378999999999999985321
Q ss_pred ----e---e-EEEe--cCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--c------eeeeecccceEEEEEe--c
Q 008820 414 ----L---L-TVLE--EDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--F------MKSMQTHKGSVFAVFL--E 473 (552)
Q Consensus 414 ----~---~-~~~~--~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~------~~~~~~h~~~v~~v~~--~ 473 (552)
. + .... ......+. +++++|++ +|++|+.||+|++||+.+ + ...+.+|..+|.+++| +
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 242 (393)
T d1sq9a_ 165 LNWSPTLELQGTVESPMTPSQFAT-SVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242 (393)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCC-EEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred eeeccceecccceecccCCCCcEE-EEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccc
Confidence 0 0 1111 11122233 36899987 899999999999999753 2 2345679999999887 8
Q ss_pred CCEEEEEeCCC---eEEEEecCCCeeeeeeccCC--------CcccCcceEEEEEeCC--eEEEEeCCCeEEEEEecCCc
Q 008820 474 GKWLFTGGWDK---TVSVQELAGDEFEEDVIPTG--------AIPCGSVITALLYWQG--KLFVGCADRTVKIALCNRQI 540 (552)
Q Consensus 474 ~~~l~sgs~dg---~i~iwd~~~~~~~~~~~~~~--------~~~~~~~v~~l~~~~~--~l~s~s~Dg~v~iw~~~~~~ 540 (552)
|++|++|+.|+ .|++||+++++....+.... ...|...|++++|+|+ .|++|+.|++|++||+. ++
T Consensus 243 g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~-~g 321 (393)
T d1sq9a_ 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK-TK 321 (393)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TT
T ss_pred cceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECC-CC
Confidence 99999999987 48999999887665543211 1235778999999963 59999999999999998 67
Q ss_pred ceeEEEecccc
Q 008820 541 PEIFSLLLHIN 551 (552)
Q Consensus 541 ~~~~~~~gh~~ 551 (552)
..+..+.||.+
T Consensus 322 ~~~~~l~gH~~ 332 (393)
T d1sq9a_ 322 ERITTLNMHCD 332 (393)
T ss_dssp EEEEEEECCGG
T ss_pred CEEEEECCcCC
Confidence 88999999963
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=3.5e-24 Score=206.13 Aligned_cols=277 Identities=12% Similarity=0.056 Sum_probs=206.8
Q ss_pred CCCCccccceeeecCcceEEEeeCCCeEEEEEee------------cCccceEEEEEc---CCEEEEEeCCCcEEEEeCC
Q 008820 216 NSDGADIDQARAAGGVKDLVNGLSKGNVKFKDLQ------------GHRDCVTGLAVG---GGFLFSSSFDKSIHVWSLK 280 (552)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------------~H~~~V~~l~~s---~~~l~s~s~dg~I~iwd~~ 280 (552)
+.+...|..+.+++.++.+++++.|+.+++|++. +|.++|.+++|+ +.+|++|+.||+|++|+..
T Consensus 8 ~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~ 87 (342)
T d1yfqa_ 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI 87 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred CCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecc
Confidence 4455568999999999999999999999999752 699999999997 5689999999999999999
Q ss_pred CCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcccc-ccccCCCceeeeEEEEeeCCCEEEEee
Q 008820 281 DFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLK-KWNEEKDWRYSGIHALTTSGRYLYTGS 359 (552)
Q Consensus 281 ~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~sgs 359 (552)
..........+........+.+.+...+++++.|+++++||++......... ...............+.+.++.+++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (342)
T d1yfqa_ 88 GSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGM 167 (342)
T ss_dssp SSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeec
Confidence 8888777766665555555555566788999999999999987544332221 111122222233456778888999999
Q ss_pred CCCcEEEEECCCCceeE---EecCCCCCeEEEEEe---CCEEEEEeCCCcEEEEECCCCcee------EEEec-------
Q 008820 360 GDRTIKAWSLLDGTLSC---TMSGHKSAVSTLAVC---NGVLYSGSRDGTIRLWSLSDHSLL------TVLEE------- 420 (552)
Q Consensus 360 ~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~------- 420 (552)
.|+.|++||+...+... ....+...+.+..+. +..+++++.||.+.+|+....... ..+..
T Consensus 168 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (342)
T d1yfqa_ 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247 (342)
T ss_dssp STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTC
T ss_pred CCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCC
Confidence 99999999998765432 334455566666665 348999999999999998653211 11111
Q ss_pred -CCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeee-cccceEEEEEecCCEEEEEeCCCeEEEEecCC
Q 008820 421 -DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQ-THKGSVFAVFLEGKWLFTGGWDKTVSVQELAG 493 (552)
Q Consensus 421 -~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~-~h~~~v~~v~~~~~~l~sgs~dg~i~iwd~~~ 493 (552)
.+...+. .++|+|++++|++|+.||.|++||..+ .+..+. .|...+.+++++++++++++.|+++++|....
T Consensus 248 ~~~~~~v~-~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~ 323 (342)
T d1yfqa_ 248 TNLAYPVN-SIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAID 323 (342)
T ss_dssp CSSCCCEE-EEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSSSC
T ss_pred Ccccccce-eEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEeeeeC
Confidence 1122233 379999999999999999999999654 455554 46778899999999999999999988886643
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.90 E-value=2.1e-22 Score=196.00 Aligned_cols=263 Identities=9% Similarity=0.056 Sum_probs=188.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCC-cEEEEeCCCCCCCccccccccCCCc
Q 008820 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGG-GIFVWSFSFPLGHEPLKKWNEEKDW 340 (552)
Q Consensus 262 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~ 340 (552)
|+++|+++ +|.|++||++++..++. +|...|.+++|+|+++.+++++..++ .|++||.+++.... ...+..
T Consensus 15 G~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~----~~~~~~- 86 (360)
T d1k32a3 15 GDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK----FEENLG- 86 (360)
T ss_dssp GGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE----CCCCCC-
T ss_pred CCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE----eeCCCc-
Confidence 88888887 57999999998877663 69999999999998876655565553 79999998754322 222221
Q ss_pred eeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEe----------CCCcEEEEE
Q 008820 341 RYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGS----------RDGTIRLWS 408 (552)
Q Consensus 341 ~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~----------~dg~i~iwd 408 (552)
.....+++|++++|++++.++.+++|++.+++....+..|...+.+++|+ ++ +|+.++ .++.+++||
T Consensus 87 -~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d 165 (360)
T d1k32a3 87 -NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 165 (360)
T ss_dssp -SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred -eEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeec
Confidence 12345889999999999999999999999999999999999999999999 43 666443 345699999
Q ss_pred CCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcc---------eeeeec-----------------
Q 008820 409 LSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF---------MKSMQT----------------- 462 (552)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---------~~~~~~----------------- 462 (552)
+.+++........ .... ...++|+|+.|++++.++.+.+||.... ...+..
T Consensus 166 ~~~~~~~~~~~~~--~~~~-~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 242 (360)
T d1k32a3 166 MEGRKIFAATTEN--SHDY-APAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTS 242 (360)
T ss_dssp TTTTEEEECSCSS--SBEE-EEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSC
T ss_pred cccCceeeecccc--cccc-cccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcc
Confidence 9988765444322 3333 3689999999999999999999974310 000000
Q ss_pred -------------------ccceEEEEEe---------------cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCccc
Q 008820 463 -------------------HKGSVFAVFL---------------EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPC 508 (552)
Q Consensus 463 -------------------h~~~v~~v~~---------------~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 508 (552)
..+....+.. ++.++++++.++.|++||+.+++....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--------- 313 (360)
T d1k32a3 243 EAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV--------- 313 (360)
T ss_dssp CCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE---------
T ss_pred cccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEe---------
Confidence 0011111211 122455666789999999988765432
Q ss_pred CcceEEEEEeCC--eEEEEeCCCeEEEEEecCCcceeEEE
Q 008820 509 GSVITALLYWQG--KLFVGCADRTVKIALCNRQIPEIFSL 546 (552)
Q Consensus 509 ~~~v~~l~~~~~--~l~s~s~Dg~v~iw~~~~~~~~~~~~ 546 (552)
...|.+++|+|+ +|++++.||.|++|+++. +....++
T Consensus 314 ~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~-~~~~~~~ 352 (360)
T d1k32a3 314 KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK-PEDERTV 352 (360)
T ss_dssp EEEEEEEEECTTSCEEEEEETTSCEEEEESSC-TTSCEEC
T ss_pred cCCcCEEEECCCCCEEEEEECCCeEEEEECCC-CCcceEE
Confidence 345889999953 599999999999999984 3344444
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.87 E-value=1.8e-20 Score=187.36 Aligned_cols=282 Identities=10% Similarity=-0.005 Sum_probs=178.6
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceee
Q 008820 264 FLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYS 343 (552)
Q Consensus 264 ~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 343 (552)
++++++.||+|+|||+.+++.+.++..|. .+..++|+|++. ++++++.|++|++||+.+.+.................
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk-~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~ 111 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGR-YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE 111 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCC-EEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence 56788899999999999999999999875 589999999876 6688899999999999977643322211111101111
Q ss_pred eEEEEeeCCCEE-EEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC--EEEEEeCCCc-----------EEEEE
Q 008820 344 GIHALTTSGRYL-YTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG--VLYSGSRDGT-----------IRLWS 408 (552)
Q Consensus 344 ~~~~~~~~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~--~l~s~~~dg~-----------i~iwd 408 (552)
...+++|||+++ +++..++.+.+||..++++...+..|...+....+. ++ ..++.+.|+. +.+++
T Consensus 112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~ 191 (426)
T d1hzua2 112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 191 (426)
T ss_dssp ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred EeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 112456889976 555688999999999999988887766555444444 11 3334444444 44444
Q ss_pred CCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECC-CcEEEEeCC---------------------------------
Q 008820 409 LSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES-GSIKVWRND--------------------------------- 454 (552)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g~i~iwd~~--------------------------------- 454 (552)
.................... +.++|++++++++..+ ..+.+++..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (426)
T d1hzua2 192 YKDIDNLTVTSIGAAPFLAD-GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWST 270 (426)
T ss_dssp CSSSSSCEEEEEECCSSEEE-EEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEE
T ss_pred eccccceeeEEeccCCccEe-eeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEe
Confidence 43333222211111222233 5778888776665432 334444311
Q ss_pred -----------------------cceeeeecccceEEEEEe--cCCEEEE-------EeCCCeEEEEecCCCeeeeeecc
Q 008820 455 -----------------------KFMKSMQTHKGSVFAVFL--EGKWLFT-------GGWDKTVSVQELAGDEFEEDVIP 502 (552)
Q Consensus 455 -----------------------~~~~~~~~h~~~v~~v~~--~~~~l~s-------gs~dg~i~iwd~~~~~~~~~~~~ 502 (552)
+....+.+|...+..+.+ ++++|++ ++.|++|++||+.+++.......
T Consensus 271 ~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~ 350 (426)
T d1hzua2 271 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP 350 (426)
T ss_dssp ECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC
T ss_pred ccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEec
Confidence 123345667777766665 8999994 55688999999998765543321
Q ss_pred C----CCcccCcceEEEEEeC-Ce-E-EEE----eCCCeEEEEEecCCcceeEEEecc
Q 008820 503 T----GAIPCGSVITALLYWQ-GK-L-FVG----CADRTVKIALCNRQIPEIFSLLLH 549 (552)
Q Consensus 503 ~----~~~~~~~~v~~l~~~~-~~-l-~s~----s~Dg~v~iw~~~~~~~~~~~~~gh 549 (552)
. ....+...|.+++|+| ++ + +++ +.||.|+|||.. +.+....+.++
T Consensus 351 ~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~-T~k~~~~i~~~ 407 (426)
T d1hzua2 351 IAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK-TLKLKAVVKDP 407 (426)
T ss_dssp HHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETT-TTEEEEEECCT
T ss_pred cchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECC-CCeEEEEECCC
Confidence 1 1112355688999995 43 4 343 368999999987 55555555544
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.86 E-value=8.9e-19 Score=165.44 Aligned_cols=263 Identities=12% Similarity=0.112 Sum_probs=191.1
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeee
Q 008820 265 LFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSG 344 (552)
Q Consensus 265 l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 344 (552)
.++++.|++|.+||+++++.+++++.. ..+..++|+|++..++++++.++.|++||+.++.....+. .+.. . .
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~---~~~~--~-~ 77 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP---AGSS--P-Q 77 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE---CSSS--E-E
T ss_pred EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee---cccc--c-c
Confidence 346778999999999999999998754 5578999999998888899999999999998765433332 2222 1 2
Q ss_pred EEEEeeCCC-EEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC--EEEEEeCCCcEEEEECCCCceeEEEec
Q 008820 345 IHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG--VLYSGSRDGTIRLWSLSDHSLLTVLEE 420 (552)
Q Consensus 345 ~~~~~~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 420 (552)
...++++++ .++++..++.+.+|+..+++....+..+ ....++.++ ++ .++++..++.+.+|+..+++....+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (301)
T d1l0qa2 78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV 156 (301)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc
Confidence 346778887 5556667889999999999988888754 456788888 33 456677789999999999998888876
Q ss_pred CCCCceEEEEEEcCCCCEEEEEECC-CcEEEEeCCc--ceeeeecccceEEEEE--ecCCEEEEEe---CCCeEEEEecC
Q 008820 421 DSSGAVSSVLSLTAVQHTLVVSHES-GSIKVWRNDK--FMKSMQTHKGSVFAVF--LEGKWLFTGG---WDKTVSVQELA 492 (552)
Q Consensus 421 ~~~~~~~~~~~~s~~~~~l~~g~~d-g~i~iwd~~~--~~~~~~~h~~~v~~v~--~~~~~l~sgs---~dg~i~iwd~~ 492 (552)
.. .... +.++++++.+++++.+ +.+.+|+... .......+ .....+. +++..++.++ .++.|++||+.
T Consensus 157 ~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~ 232 (301)
T d1l0qa2 157 GR--SPKG-IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG 232 (301)
T ss_dssp CS--SEEE-EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred CC--CceE-EEeeccccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeeecC
Confidence 53 2333 6899999988888766 4556666443 33333333 3344444 4788776554 34689999999
Q ss_pred CCeeeeeeccCCCcccCcceEEEEEeC-C-eE-EEEeCCCeEEEEEecCCcceeEEE
Q 008820 493 GDEFEEDVIPTGAIPCGSVITALLYWQ-G-KL-FVGCADRTVKIALCNRQIPEIFSL 546 (552)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~v~~l~~~~-~-~l-~s~s~Dg~v~iw~~~~~~~~~~~~ 546 (552)
+++....+.. ...+.+++|+| + +| ++++.|+.|++||++ +.+.+.++
T Consensus 233 t~~~~~~~~~------~~~~~~va~spdg~~l~va~~~~~~i~v~D~~-t~~~~~~~ 282 (301)
T d1l0qa2 233 TNKITARIPV------GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTA-TNTITATM 282 (301)
T ss_dssp TTEEEEEEEC------CSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEE
T ss_pred CCeEEEEEcC------CCCEEEEEEeCCCCEEEEEECCCCeEEEEECC-CCeEEEEE
Confidence 9887665443 33478999995 3 35 567789999999997 45555554
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.84 E-value=4.7e-20 Score=179.08 Aligned_cols=265 Identities=11% Similarity=0.007 Sum_probs=180.5
Q ss_pred eeeec-CcceEEEeeCCCeEEEEEe-------ecCccceEEEEEc--CCEEEEEeCCC--cEEEEeCCCCeEEEEEeCCC
Q 008820 225 ARAAG-GVKDLVNGLSKGNVKFKDL-------QGHRDCVTGLAVG--GGFLFSSSFDK--SIHVWSLKDFSHVHTFKGHD 292 (552)
Q Consensus 225 ~~~~~-~~~~~~~~~~~~~~~~~~l-------~~H~~~V~~l~~s--~~~l~s~s~dg--~I~iwd~~~~~~~~~~~~h~ 292 (552)
..+++ +++.++.. ..+.+.+|++ .+|...|++++|+ |++|++++.+. .|++||.++++.. .+..|.
T Consensus 8 ~~fSP~dG~~~a~~-~~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~ 85 (360)
T d1k32a3 8 EDFSPLDGDLIAFV-SRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENL 85 (360)
T ss_dssp EEEEECGGGCEEEE-ETTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCC
T ss_pred ccccCCCCCEEEEE-ECCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCC
Confidence 34555 44444443 2345554442 3699999999999 88888776653 7999999887654 567899
Q ss_pred CCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEe----------eCCC
Q 008820 293 HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTG----------SGDR 362 (552)
Q Consensus 293 ~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg----------s~dg 362 (552)
..|.+++|+|++. ++++++.++.+++|++.+............ .....+++++|++|+.+ ..++
T Consensus 86 ~~v~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~spdg~~la~~~~~~~~~~~~~~~~ 159 (360)
T d1k32a3 86 GNVFAMGVDRNGK-FAVVANDRFEIMTVDLETGKPTVIERSREA-----MITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159 (360)
T ss_dssp CSEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECSSS-----CCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred ceEEeeeeccccc-ccceeccccccccccccccceeeeeecccc-----cccchhhccceeeeeeeccccccceeecccc
Confidence 9999999999765 778999999999999987654433332221 11235789999988754 3455
Q ss_pred cEEEEECCCCceeEEecCCCCCeEEEEEe-C-CEEEEEeCCCcEEEEECCCCce-------eEEEecCCC----------
Q 008820 363 TIKAWSLLDGTLSCTMSGHKSAVSTLAVC-N-GVLYSGSRDGTIRLWSLSDHSL-------LTVLEEDSS---------- 423 (552)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~-~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~---------- 423 (552)
.+++||+.+++... +..+...+.++.|+ + ..|++++.|+.+++||...... ...+..+..
T Consensus 160 ~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 238 (360)
T d1k32a3 160 AIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR 238 (360)
T ss_dssp EEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCG
T ss_pred ceeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCC
Confidence 79999998876654 44477788899999 3 4899999999999999754321 111111100
Q ss_pred ------------------------CceEEEEEEcCCC-------------CEEEEEECCCcEEEEeCCcceeeeecccce
Q 008820 424 ------------------------GAVSSVLSLTAVQ-------------HTLVVSHESGSIKVWRNDKFMKSMQTHKGS 466 (552)
Q Consensus 424 ------------------------~~~~~~~~~s~~~-------------~~l~~g~~dg~i~iwd~~~~~~~~~~h~~~ 466 (552)
......+...+++ .++++++.++.|++||+.+. ....|.+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~~~~~ 316 (360)
T d1k32a3 239 SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR--KVTEVKNN 316 (360)
T ss_dssp GGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC--CEEEEEEE
T ss_pred cCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCC--eEEEecCC
Confidence 0000111222221 23445566789999997653 23345566
Q ss_pred EEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeee
Q 008820 467 VFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDV 500 (552)
Q Consensus 467 v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~ 500 (552)
|.+++| ||++|++++.||.|++||+++++.....
T Consensus 317 v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~ 352 (360)
T d1k32a3 317 LTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352 (360)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEEC
T ss_pred cCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence 777765 9999999999999999999887655443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=6.1e-19 Score=169.27 Aligned_cols=270 Identities=9% Similarity=-0.009 Sum_probs=188.4
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEEeCC--CCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCc
Q 008820 263 GFLFSSSFDKSIHVWSLKDFSHVHTFKGH--DHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDW 340 (552)
Q Consensus 263 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~h--~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 340 (552)
+++++++.|++|+|||+++++.+.++..+ ...+.+++|+|++..++++++.++.|.+||+.+++....+.........
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 68999999999999999999999998754 4567899999988877788899999999999987654443332211111
Q ss_pred eeeeEEEEeeCCCEEEEee------------CCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeCCCcEEE
Q 008820 341 RYSGIHALTTSGRYLYTGS------------GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRL 406 (552)
Q Consensus 341 ~~~~~~~~~~~~~~l~sgs------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i~i 406 (552)
....-.+++++++.++++. .++.+.+||..+++....+.. ...+.+++++ ++ ++++++. .+.+
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~~ 158 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR--DLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS--SEEE
T ss_pred cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcC--Ccce
Confidence 1122357889999887775 467899999999999888874 4557889998 44 7777754 4788
Q ss_pred EECCCCceeEEEecCCCCceEEEEEEcCCCCE------------------------EEEEECCCcEEEEeCCcc---eee
Q 008820 407 WSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHT------------------------LVVSHESGSIKVWRNDKF---MKS 459 (552)
Q Consensus 407 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~------------------------l~~g~~dg~i~iwd~~~~---~~~ 459 (552)
||..+++....+..+..... ..+++++.. ...+..++.+.+||.... ...
T Consensus 159 ~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred eeeecCcEEEEeecCCcccc---ceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEE
Confidence 99999988887765422111 112222211 111222345777775432 222
Q ss_pred eecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEEeCCCeEEEEE
Q 008820 460 MQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVGCADRTVKIAL 535 (552)
Q Consensus 460 ~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~s~Dg~v~iw~ 535 (552)
+..+...+..+.+ ++.+++.+ ++.|++||+.+++....... ...+.+++|++ .+|++++.||.|++||
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~------~~~~~~~~~s~dG~~l~v~~~~~~i~v~D 307 (337)
T d1pbyb_ 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL------PHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC------SSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred ecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcC------CCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 3345555555554 67777665 58999999999988776544 34578899995 3589999999999999
Q ss_pred ecCCcceeEEEe
Q 008820 536 CNRQIPEIFSLL 547 (552)
Q Consensus 536 ~~~~~~~~~~~~ 547 (552)
.. +.+.+.++.
T Consensus 308 ~~-t~~~v~~i~ 318 (337)
T d1pbyb_ 308 AE-TLEKKGQVD 318 (337)
T ss_dssp TT-TCCEEEEEE
T ss_pred CC-CCcEEEEEE
Confidence 97 566665553
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.82 E-value=5.4e-18 Score=168.97 Aligned_cols=188 Identities=8% Similarity=-0.040 Sum_probs=135.8
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceee
Q 008820 264 FLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYS 343 (552)
Q Consensus 264 ~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 343 (552)
++++.+.||+|.|||..+++++..+..| ..+..++|+|++. ++++++.|+++++||+.+.+.................
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~-~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~ 111 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGR-YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE 111 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSC-EEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCC-EEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence 3588999999999999999999999977 4699999999776 5678899999999999876533222111111111111
Q ss_pred eEEEEeeCCCEE-EEeeCCCcEEEEECCCCceeEEecCC-----------CCCeEEEEEe-CC--EEEEEeCCCcEEEEE
Q 008820 344 GIHALTTSGRYL-YTGSGDRTIKAWSLLDGTLSCTMSGH-----------KSAVSTLAVC-NG--VLYSGSRDGTIRLWS 408 (552)
Q Consensus 344 ~~~~~~~~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~~h-----------~~~v~~l~~~-~~--~l~s~~~dg~i~iwd 408 (552)
....++|||+++ ++++.++.|++||..+++++..+..| ......+.++ ++ ++++...++.|.+||
T Consensus 112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d 191 (432)
T d1qksa2 112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 191 (432)
T ss_dssp ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEE
Confidence 112467899965 77888999999999999998877544 3445567777 33 566777889999999
Q ss_pred CCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECC-CcEEEEeCC
Q 008820 409 LSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES-GSIKVWRND 454 (552)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g~i~iwd~~ 454 (552)
..+++.......+...... .++++|+|+++++++.+ +.+.++|..
T Consensus 192 ~~~~~~~~~~~i~~g~~~~-~~~~spdg~~~~va~~~~~~v~v~d~~ 237 (432)
T d1qksa2 192 YTDLNNLKTTEISAERFLH-DGGLDGSHRYFITAANARNKLVVIDTK 237 (432)
T ss_dssp TTCSSEEEEEEEECCSSEE-EEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred ccCCCcceEEEEcccCccc-cceECCCCCEEEEeccccceEEEeecc
Confidence 9988766554444333333 37999999988877754 466677643
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.80 E-value=1.3e-18 Score=167.53 Aligned_cols=277 Identities=9% Similarity=0.040 Sum_probs=189.2
Q ss_pred EEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeC-CCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcccccc
Q 008820 258 LAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKG-HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKW 334 (552)
Q Consensus 258 l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 334 (552)
++|+ ++++++++.|++|.+||+++++.+.+++. |...+.+++|+|++..++++++.++.|++||+.+++....+...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 3555 88999999999999999999999999874 56678899999999888889999999999999876544333221
Q ss_pred ccCCCc-eeeeEEEEeeCCCEEEEee------------CCCcEEEEECCCCceeEEecC--CCCCeEEEEEe-CCEEEEE
Q 008820 335 NEEKDW-RYSGIHALTTSGRYLYTGS------------GDRTIKAWSLLDGTLSCTMSG--HKSAVSTLAVC-NGVLYSG 398 (552)
Q Consensus 335 ~~~~~~-~~~~~~~~~~~~~~l~sgs------------~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~-~~~l~s~ 398 (552)
...... ....-.+++++|+++++++ .++.+.+||..+++....+.. ....+..+.++ ++.+++.
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA 161 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence 111110 1112347899999887764 477899999988766544322 23345556666 4455554
Q ss_pred eCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCC--------------------------EEEEEECCCcEEEEe
Q 008820 399 SRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQH--------------------------TLVVSHESGSIKVWR 452 (552)
Q Consensus 399 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--------------------------~l~~g~~dg~i~iwd 452 (552)
+ +.+.+||+.+++.+..+..+... .. ..++|++. .++++..++.+.+||
T Consensus 162 ~--~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
T d1jmxb_ 162 G--PDIYKMDVKTGKYTVALPLRNWN--RK-GYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 236 (346)
T ss_dssp S--SSEEEECTTTCCEEEEECSTTCC--CT-TBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred C--CcceEEEccCCCEEEEEecCCCc--cc-eEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEE
Confidence 3 56899999999988877654211 11 12333332 233344455677777
Q ss_pred CCcc---eeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC--CeEEEE
Q 008820 453 NDKF---MKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ--GKLFVG 525 (552)
Q Consensus 453 ~~~~---~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~s~ 525 (552)
.... ......|...+..+.+ ++.+++... ++.|++||..+++....... ...+.+++|++ .+++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~------~~~~~~va~s~DG~~l~v~ 309 (346)
T d1jmxb_ 237 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL------DHTYYCVAFDKKGDKLYLG 309 (346)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC------SSCCCEEEECSSSSCEEEE
T ss_pred CCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcC------CCCEEEEEEcCCCCEEEEE
Confidence 5432 2334456666666654 666666665 46899999999887666543 33578899995 359999
Q ss_pred eCCCeEEEEEecCCcceeEEEe
Q 008820 526 CADRTVKIALCNRQIPEIFSLL 547 (552)
Q Consensus 526 s~Dg~v~iw~~~~~~~~~~~~~ 547 (552)
+.||.|++||.. +.+.+.++.
T Consensus 310 ~~d~~v~v~D~~-t~~~i~~i~ 330 (346)
T d1jmxb_ 310 GTFNDLAVFNPD-TLEKVKNIK 330 (346)
T ss_dssp SBSSEEEEEETT-TTEEEEEEE
T ss_pred eCCCcEEEEECc-cCCEEEEEE
Confidence 999999999998 677776665
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.79 E-value=2.8e-16 Score=147.95 Aligned_cols=244 Identities=13% Similarity=0.145 Sum_probs=178.6
Q ss_pred EEEeecCccceEEEEEc--CCEE-EEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEe
Q 008820 245 FKDLQGHRDCVTGLAVG--GGFL-FSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (552)
Q Consensus 245 ~~~l~~H~~~V~~l~~s--~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 321 (552)
+.++... ..+..++|+ |++| ++++.++.|++||+.+++.+.++..|. .+..++|++++..+++++..++.+.+|+
T Consensus 25 ~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (301)
T d1l0qa2 25 TATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVID 102 (301)
T ss_dssp EEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceeeecc
Confidence 3444433 457889999 7776 567789999999999999999998775 4689999999988888999999999999
Q ss_pred CCCCCCCccccccccCCCceeeeEEEEeeCCCEE-EEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEE
Q 008820 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYL-YTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSG 398 (552)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~ 398 (552)
..+......+.. .. ......++++++.+ +++..++.+.+|+..+++.+..+..+ ..+.++.++ +..++++
T Consensus 103 ~~~~~~~~~~~~---~~---~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 175 (301)
T d1l0qa2 103 TTSNTVAGTVKT---GK---SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVA 175 (301)
T ss_dssp TTTTEEEEEEEC---SS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEE
T ss_pred cccceeeeeccc---cc---cceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeee
Confidence 986643333322 11 12345788898855 56667888999999999998888754 457888888 3356655
Q ss_pred eC-CCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEEC---CCcEEEEeCCc--ceeeeecccceEEEEEe
Q 008820 399 SR-DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHE---SGSIKVWRNDK--FMKSMQTHKGSVFAVFL 472 (552)
Q Consensus 399 ~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i~iwd~~~--~~~~~~~h~~~v~~v~~ 472 (552)
+. ++.+.+|+....+........ ..... +.++++++.+++++. ++.|++||..+ ....+..+ ..+.++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~ 251 (301)
T d1l0qa2 176 NFDSMSISVIDTVTNSVIDTVKVE--AAPSG-IAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAV 251 (301)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECS--SEEEE-EEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEE
T ss_pred cccccccccccccceeeeeccccc--CCcce-eeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEE
Confidence 54 567778888777776666543 22333 689999998876653 46899999764 34444443 34566665
Q ss_pred --cCCEE-EEEeCCCeEEEEecCCCeeeeeec
Q 008820 473 --EGKWL-FTGGWDKTVSVQELAGDEFEEDVI 501 (552)
Q Consensus 473 --~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~ 501 (552)
||++| ++++.|+.|++||++++++...+.
T Consensus 252 spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 252 TPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 89877 577789999999999988776553
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.75 E-value=8.6e-17 Score=160.19 Aligned_cols=265 Identities=14% Similarity=0.044 Sum_probs=174.4
Q ss_pred EEeeCCCeEEEEE---------eecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEE--Ee---CCCCCeEEE
Q 008820 235 VNGLSKGNVKFKD---------LQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHT--FK---GHDHKVMAV 298 (552)
Q Consensus 235 ~~~~~~~~~~~~~---------l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~--~~---~h~~~v~~v 298 (552)
++...++.+.+|+ +..|. .+.+++|+ |+++++++.|++|++||+.+++.... ++ +|.+.+.++
T Consensus 36 V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~ 114 (426)
T d1hzua2 36 VTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK 114 (426)
T ss_dssp EEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEee
Confidence 4444555555554 56664 58999999 99999999999999999998875433 32 455667777
Q ss_pred EEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccc---------c---------------------CCC---------
Q 008820 299 VYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWN---------E---------------------EKD--------- 339 (552)
Q Consensus 299 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~---------------------~~~--------- 339 (552)
+|+|++..+++++..++.+++||..+........... . ...
T Consensus 115 ~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~ 194 (426)
T d1hzua2 115 FKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 194 (426)
T ss_dssp STTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSS
T ss_pred eecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecc
Confidence 8888888888888899999999988653221110000 0 000
Q ss_pred ---cee--------eeEEEEeeCCCEEEEee-CCCcEEEEECCCCceeEEecC--CCCCeEEEEEe--C-C--EEEEEeC
Q 008820 340 ---WRY--------SGIHALTTSGRYLYTGS-GDRTIKAWSLLDGTLSCTMSG--HKSAVSTLAVC--N-G--VLYSGSR 400 (552)
Q Consensus 340 ---~~~--------~~~~~~~~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~--~-~--~l~s~~~ 400 (552)
... ..-..+++++++++++. .+..+.+++..+++.+..... +........+. . + ..++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (426)
T d1hzua2 195 IDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLG 274 (426)
T ss_dssp SSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTT
T ss_pred ccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCC
Confidence 000 01135667777655554 556788999998888776643 22223334443 2 2 2334456
Q ss_pred CCcEEEEECCC-------CceeEEEecCCCCceEEEEEEcCCCCEEEE-------EECCCcEEEEeCCc--ceeee----
Q 008820 401 DGTIRLWSLSD-------HSLLTVLEEDSSGAVSSVLSLTAVQHTLVV-------SHESGSIKVWRNDK--FMKSM---- 460 (552)
Q Consensus 401 dg~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-------g~~dg~i~iwd~~~--~~~~~---- 460 (552)
|+.+.+|+... ++....+..+.. .+.. ++++|+++++++ +..|++|++||..+ ....+
T Consensus 275 d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~-~v~~-v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~ 352 (426)
T d1hzua2 275 DGSISLIGTDPKNHPQYAWKKVAELQGQGG-GSLF-IKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA 352 (426)
T ss_dssp TCEEEEEECCTTTCTTTBTSEEEEEECSSS-CCCC-EECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH
T ss_pred CceEEEeeccccccccccceEeEEEecCCC-ceeE-EEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccc
Confidence 88899988754 366777777643 3344 699999999995 45678999999654 22222
Q ss_pred -----ecccceEEEEEe--cCCEEEEE-----eCCCeEEEEecCCCeeeeeecc
Q 008820 461 -----QTHKGSVFAVFL--EGKWLFTG-----GWDKTVSVQELAGDEFEEDVIP 502 (552)
Q Consensus 461 -----~~h~~~v~~v~~--~~~~l~sg-----s~dg~i~iwd~~~~~~~~~~~~ 502 (552)
..|...|..+.| ||++++.+ +.+|.|+|||..+.+....+..
T Consensus 353 ~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~ 406 (426)
T d1hzua2 353 EWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 406 (426)
T ss_dssp HHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECC
T ss_pred hhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECC
Confidence 245566877665 99877543 3578999999999887665443
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=4.3e-17 Score=162.38 Aligned_cols=248 Identities=9% Similarity=-0.064 Sum_probs=156.8
Q ss_pred CCeEEEEEeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeE--EEEEe---CCCCCeEEEEEecCCCCEEEEEc
Q 008820 240 KGNVKFKDLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSH--VHTFK---GHDHKVMAVVYVDEDQPLCISGD 312 (552)
Q Consensus 240 ~~~~~~~~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~--~~~~~---~h~~~v~~v~~~~~~~~~l~s~~ 312 (552)
+....+..+..| ..+..++|+ |+++++++.|++|++||+.+++. ...++ +|.+.+.+..|+|+++.++++++
T Consensus 50 ~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~ 128 (432)
T d1qksa2 50 STYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY 128 (432)
T ss_dssp TTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred CCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcC
Confidence 333344456666 469999999 99999999999999999988763 33333 45566666777888888889999
Q ss_pred CCCcEEEEeCCCCCCCccccccccCC------CceeeeEEEEeeCCCE-EEEeeCCCcEEEEECCCCceeEEec-CCCCC
Q 008820 313 SGGGIFVWSFSFPLGHEPLKKWNEEK------DWRYSGIHALTTSGRY-LYTGSGDRTIKAWSLLDGTLSCTMS-GHKSA 384 (552)
Q Consensus 313 ~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-l~sgs~dg~i~iwd~~~~~~~~~~~-~h~~~ 384 (552)
.+++|++||..+++....+....... .........+++++.. +++...++.|.+||..+++...... .+...
T Consensus 129 ~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~ 208 (432)
T d1qksa2 129 WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERF 208 (432)
T ss_dssp ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSS
T ss_pred CCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCc
Confidence 99999999998775443332211100 0011112356788874 5667778999999998877554332 35667
Q ss_pred eEEEEEe-CC-EEEEEe-CCCcEEEEECCCCceeEEEecCC----CCce-------------------------------
Q 008820 385 VSTLAVC-NG-VLYSGS-RDGTIRLWSLSDHSLLTVLEEDS----SGAV------------------------------- 426 (552)
Q Consensus 385 v~~l~~~-~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~----~~~~------------------------------- 426 (552)
+.+++|+ ++ ++++++ .++.+.++|..+++.+..+.... ....
T Consensus 209 ~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~ 288 (432)
T d1qksa2 209 LHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG 288 (432)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred cccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc
Confidence 8899999 43 555555 56689999998877665543211 0000
Q ss_pred -------EEEEEEcCCCCEEEEEECCCcEEEEeCCcceeeeecccceEEEEE-ecCCEEEEEeCCCeEEEEecC
Q 008820 427 -------SSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGSVFAVF-LEGKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 427 -------~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~h~~~v~~v~-~~~~~l~sgs~dg~i~iwd~~ 492 (552)
.....+++++..+++++.+...++|+... +..|.....++. +|++.+++++.|+.+++||+.
T Consensus 289 ~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~----~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~ 358 (432)
T d1qksa2 289 HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDAT----LNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIA 358 (432)
T ss_dssp CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECT----TCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHH
T ss_pred ccccccEEEEEEEcCCCCeEEEEecCCccceeeccc----CCCCCCeeeEEEEEechhhcccccCCceEecccc
Confidence 01123445555666666666666665321 122222111111 577777777777777777753
|
| >d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: B-Raf kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.2e-19 Score=166.86 Aligned_cols=127 Identities=16% Similarity=0.207 Sum_probs=78.8
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p 88 (552)
-.+|+. |+|+.+.........+.+.|||.|||||++ .+ .....++.++|||||||+||||+||+ |
T Consensus 141 ~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l------~~------~~~~~~~~~sDiwS~Gv~l~el~tg~~P 208 (276)
T d1uwha_ 141 LTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVI------RM------QDKNPYSFQSDVYAFGIVLYELMTGQLP 208 (276)
T ss_dssp SSEEECCCCCSCC------------CCCCGGGCCHHHH------TT------CSSCCCCHHHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEEccccceeeccccCCcccccccccCcccCCHHHH------hc------ccCCCCCchhhhhhhHHHHHHHHHCCCC
Confidence 456777 788777665544457889999999999999 22 01235678999999999999999999 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHH-HHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKV-TYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|.+....... ........ ...........+.++.+++.+||+.+|.+||++.++.+.+..+.
T Consensus 209 f~~~~~~~~~----------------~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~Le~l~ 271 (276)
T d1uwha_ 209 YSNINNRDQI----------------IFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLA 271 (276)
T ss_dssp TTTCCCHHHH----------------HHHHHHTSCCCCGGGSCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCChHHHH----------------HHHHhcCCCCCcchhccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence 9763322000 00000000 00001111223446999999999999999999999998887664
|
| >d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Calmodulin-dependent protein kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=1.3e-19 Score=171.05 Aligned_cols=113 Identities=17% Similarity=0.109 Sum_probs=65.5
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+|+.+..... ....+|||.|||||++ .| ..+++++|||||||+||||+||+ ||
T Consensus 148 ~vkl~DFG~a~~~~~~~~---~~~~~GT~~y~APE~~------~~---------~~~~~~~DiwSlGvilyell~g~~Pf 209 (307)
T d1a06a_ 148 KIMISDFGLSKMEDPGSV---LSTACGTPGYVAPEVL------AQ---------KPYSKAVDCWSIGVIAYILLCGYPPF 209 (307)
T ss_dssp CEEECCC---------------------CTTSCHHHH------TT---------CCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred eEEEeccceeEEccCCCe---eeeeeeCccccCcHHH------cC---------CCCCcHHHhhhhhHHHHHHHhCCCCC
Confidence 34666 78877765543 5678999999999999 33 56789999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+.....+. ..+.......+.+.....++++.+++.+||+.+|.+||++.++.+
T Consensus 210 ~~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 263 (307)
T d1a06a_ 210 YDENDAKLF-----------------EQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQ 263 (307)
T ss_dssp CCSSHHHHH-----------------HHHHTTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred CCCCHHHHH-----------------HHHhccCCCCCCccccCCCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence 664433210 000000000111112233456999999999999999999887655
|
| >d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Aurora-related kinase 1 (aurora-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=3e-19 Score=164.46 Aligned_cols=108 Identities=15% Similarity=0.245 Sum_probs=77.0
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+|+.+.... .....|||.|||||++ .| ..+++++|||||||+||||+||+ ||
T Consensus 144 ~~kl~DFG~a~~~~~~~----~~~~~Gt~~Y~APE~~------~~---------~~~~~~~DiwSlGvilyell~G~~Pf 204 (263)
T d2j4za1 144 ELKIADFGWSVHAPSSR----RTTLCGTLDYLPPEMI------EG---------RMHDEKVDLWSLGVLCYEFLVGKPPF 204 (263)
T ss_dssp CEEECCCCSCSCCCCCC----CEETTEEGGGCCHHHH------TT---------CCCCTTHHHHHHHHHHHHHHHSSCTT
T ss_pred CEeecccceeeecCCCc----ccccCCCCcccCHHHH------cC---------CCCCchhhhhhHhHHHHHHhcCCCCC
Confidence 34666 7777766543 4567899999999999 33 45679999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+.+...+. ..+.......+.....++.+++.+||+.+|.+||++.++.+
T Consensus 205 ~~~~~~~~~---------------------~~i~~~~~~~p~~~s~~~~~li~~~L~~dp~~R~t~~eil~ 254 (263)
T d2j4za1 205 EANTYQETY---------------------KRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLE 254 (263)
T ss_dssp CCSSHHHHH---------------------HHHHTTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCHHHHH---------------------HHHHcCCCCCCccCCHHHHHHHHHHccCCHhHCcCHHHHHc
Confidence 765443211 11111111111223456999999999999999999887654
|
| >d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: 3-phosphoinositide dependent protein kinase-1 Pdk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.5e-19 Score=167.25 Aligned_cols=111 Identities=20% Similarity=0.217 Sum_probs=73.3
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+|+.+............+|||.|||||++ . ...++.++|||||||+||||+||+ ||.
T Consensus 147 vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~------~---------~~~~~~~~DiwSlGvilyell~g~~Pf~ 211 (288)
T d1uu3a_ 147 IQITDFGTAKVLSPESKQARANSFVGTAQYVSPELL------T---------EKSACKSSDLWALGCIIYQLVAGLPPFR 211 (288)
T ss_dssp EEECCCTTCEECC----------CCCCGGGCCHHHH------H---------TCCCCHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred EEecccccceecccCCcccccccccCCccccCceee------c---------cCCCCcccceehhhHHHHHHhhCCCCCC
Confidence 4555 778777655444446778999999999999 2 255778999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
+.+...+. ..+.......+...+.++.+++.+||+.+|.+||++.++..
T Consensus 212 ~~~~~~~~---------------------~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~e~~~ 260 (288)
T d1uu3a_ 212 AGNEYLIF---------------------QKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEG 260 (288)
T ss_dssp CSSHHHHH---------------------HHHHTTCCCCCTTCCHHHHHHHHTTSCSSGGGSTTSGGGTC
T ss_pred CcCHHHHH---------------------HHHHcCCCCCCccCCHHHHHHHHHHccCCHhHCcCHHHHcC
Confidence 65433211 11110011111224456999999999999999999887643
|
| >d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine-protein kinase Nek2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=3.5e-19 Score=164.73 Aligned_cols=110 Identities=20% Similarity=0.260 Sum_probs=71.7
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|++ |+|+.+..... ..+...|||.|||||++ . ...+++++|||||||+||||+||+ ||
T Consensus 152 ~vkl~DFG~a~~~~~~~~--~~~~~~gt~~Y~APE~l------~---------~~~~~~~~DIwSlGvilyel~tg~~Pf 214 (269)
T d2java1 152 NVKLGDFGLARILNHDTS--FAKAFVGTPYYMSPEQM------N---------RMSYNEKSDIWSLGCLLYELCALMPPF 214 (269)
T ss_dssp CEEECCHHHHHHC-------------CCCSCCCHHHH------T---------TCCCCHHHHHHHHHHHHHHHHHSSCSC
T ss_pred cEEEeeccceeecccCCC--ccccCCCCcccCCHHHH------c---------CCCCChHHHHHhhCHHHHHHhhCCCCC
Confidence 45666 67777665433 36789999999999999 2 356789999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHh-hhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLE-NKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+.+...+ ...+..... ......+.++.+++.+||+.+|.+||++.++.+
T Consensus 215 ~~~~~~~~---------------------~~~i~~~~~~~~~~~~s~~l~~li~~~L~~dp~~Rps~~ell~ 265 (269)
T d2java1 215 TAFSQKEL---------------------AGKIREGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILE 265 (269)
T ss_dssp CCSSHHHH---------------------HHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCHHHH---------------------HHHHHcCCCCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence 76443321 111111111 111123456999999999999999999887654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.70 E-value=4e-14 Score=137.63 Aligned_cols=287 Identities=12% Similarity=-0.034 Sum_probs=188.9
Q ss_pred ecCccceEEEEEc--CCEEEEE-----eCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEE---------c
Q 008820 249 QGHRDCVTGLAVG--GGFLFSS-----SFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISG---------D 312 (552)
Q Consensus 249 ~~H~~~V~~l~~s--~~~l~s~-----s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~---------~ 312 (552)
.+|.+++.+++++ ++.++.. +.++.|.+||..+++.+.++..+..+ .++|+|++..++++. .
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence 4678889999998 7777654 33467999999999999998876654 789999888665543 3
Q ss_pred CCCcEEEEeCCCCCCCccccccccCCCc--eeeeEEEEeeCCCEEEEe--eCCCcEEEEECCCCceeEEecCCCCCeEEE
Q 008820 313 SGGGIFVWSFSFPLGHEPLKKWNEEKDW--RYSGIHALTTSGRYLYTG--SGDRTIKAWSLLDGTLSCTMSGHKSAVSTL 388 (552)
Q Consensus 313 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~sg--s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l 388 (552)
.++.|.+||..+++....+......... .......++++++.++.. ..++.+.+|+....+...... ...++
T Consensus 95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 170 (373)
T d2madh_ 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS----SPTCY 170 (373)
T ss_pred cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec----cceeE
Confidence 5688999999987654333222111100 001224678888855444 456788899988776654443 34567
Q ss_pred EEe-C-C-EEEEEeCCCcEEEEECCCCceeEEEecCC----CCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcc----e
Q 008820 389 AVC-N-G-VLYSGSRDGTIRLWSLSDHSLLTVLEEDS----SGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF----M 457 (552)
Q Consensus 389 ~~~-~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~----~ 457 (552)
.++ + . .+++.+.|+++.+||...++......... .........+++++. ++..+.++.+++|+.... .
T Consensus 171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~ 249 (373)
T d2madh_ 171 HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNK 249 (373)
T ss_pred EEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEE
Confidence 777 2 2 67889999999999999888766554321 112222234555554 445567888999885432 1
Q ss_pred eeeecccc------------eEEEEEe----------cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEE
Q 008820 458 KSMQTHKG------------SVFAVFL----------EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITAL 515 (552)
Q Consensus 458 ~~~~~h~~------------~v~~v~~----------~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l 515 (552)
.....+.. ....+.+ ++..+++...++.+.+||..+++....+.. ...+..+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~------~~~~~~~ 323 (373)
T d2madh_ 250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL------GHDVDAI 323 (373)
T ss_pred EeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecC------CCCeeEE
Confidence 11111111 1112222 344556667788999999998877665543 4457889
Q ss_pred EEeC-Ce---EEEEeCCCeEEEEEecCCcceeEEEecc
Q 008820 516 LYWQ-GK---LFVGCADRTVKIALCNRQIPEIFSLLLH 549 (552)
Q Consensus 516 ~~~~-~~---l~s~s~Dg~v~iw~~~~~~~~~~~~~gh 549 (552)
+|++ +. +++++.|+.|++||.. +++.+.++.+|
T Consensus 324 a~spDG~~~l~vt~~~d~~v~v~D~~-tg~~~~~~~~~ 360 (373)
T d2madh_ 324 SVAQDGGPDLYALSAGTEVLHIYDAG-AGDQDQSTVEL 360 (373)
T ss_pred EECCCCCEEEEEEeCCCCeEEEEECC-CCCEEEEECCC
Confidence 9995 32 4578999999999998 67788888755
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.69 E-value=4.8e-15 Score=141.53 Aligned_cols=257 Identities=11% Similarity=0.028 Sum_probs=172.1
Q ss_pred EEEeeCCCeEEEEE---------ee--cCccceEEEEEc--CCEE-EEEeCCCcEEEEeCCCCeEEEEEeCCCC-----C
Q 008820 234 LVNGLSKGNVKFKD---------LQ--GHRDCVTGLAVG--GGFL-FSSSFDKSIHVWSLKDFSHVHTFKGHDH-----K 294 (552)
Q Consensus 234 ~~~~~~~~~~~~~~---------l~--~H~~~V~~l~~s--~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~h~~-----~ 294 (552)
++++..++++.+|+ +. .+...+.+++|+ |+++ ++++.++.|.+||+.+++.+..+..+.. .
T Consensus 4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~ 83 (337)
T d1pbyb_ 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKS 83 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEEC
T ss_pred EEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccc
Confidence 44455555555554 33 244567899999 7776 5667899999999999999998877643 3
Q ss_pred eEEEEEecCCCCEEEEEc-----------CCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCc
Q 008820 295 VMAVVYVDEDQPLCISGD-----------SGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRT 363 (552)
Q Consensus 295 v~~v~~~~~~~~~l~s~~-----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~ 363 (552)
+..++|+|++..++++.. .+..+.+||..+......+..... ....+++++++++++++. .
T Consensus 84 ~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~~~~--~ 155 (337)
T d1pbyb_ 84 LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ------ITMLAWARDGSKLYGLGR--D 155 (337)
T ss_dssp TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS------CCCEEECTTSSCEEEESS--S
T ss_pred eeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCC------ceEEEEcCCCCEEEEEcC--C
Confidence 457899998776554433 467888999887654333332211 123478999999988864 4
Q ss_pred EEEEECCCCceeEEecCCCCCe------EEEEEe-------------------CCEEEEEeCCCcEEEEECCCCceeEEE
Q 008820 364 IKAWSLLDGTLSCTMSGHKSAV------STLAVC-------------------NGVLYSGSRDGTIRLWSLSDHSLLTVL 418 (552)
Q Consensus 364 i~iwd~~~~~~~~~~~~h~~~v------~~l~~~-------------------~~~l~s~~~dg~i~iwd~~~~~~~~~~ 418 (552)
+.+||..+++....+..+.... ....+. ......++.++.+.+||..++......
T Consensus 156 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (337)
T d1pbyb_ 156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235 (337)
T ss_dssp EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEE
Confidence 7889999998887775432110 000000 112222334567999999998876554
Q ss_pred ecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCC
Q 008820 419 EEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGD 494 (552)
Q Consensus 419 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~ 494 (552)
..+...... ...+++++.+++++ ++.|++||..+ .+..+. +...+.++.+ ||++|++++.|+.|++||..+.
T Consensus 236 ~~~~~~~~~-~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~ 311 (337)
T d1pbyb_ 236 VRIMDVFYF-STAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp EEECSSCEE-EEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred ecCCCcceE-EEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 444333333 36889999988776 47899999764 333333 4445566655 9999999999999999999988
Q ss_pred eeeeeecc
Q 008820 495 EFEEDVIP 502 (552)
Q Consensus 495 ~~~~~~~~ 502 (552)
+....+..
T Consensus 312 ~~v~~i~~ 319 (337)
T d1pbyb_ 312 EKKGQVDL 319 (337)
T ss_dssp CEEEEEEC
T ss_pred cEEEEEEC
Confidence 77665543
|
| >d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell cycle checkpoint kinase chk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.5e-18 Score=160.45 Aligned_cols=116 Identities=18% Similarity=0.250 Sum_probs=76.9
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+|+.+...+.....+..+|||.|||||++ .+ ....+.++|||||||+||||+||+ ||
T Consensus 141 ~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~------~~--------~~~~~~~~DiwSlGvilyeml~G~~pf 206 (271)
T d1nvra_ 141 NLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL------KR--------REFHAEPVDVWSCGIVLTAMLAGELPW 206 (271)
T ss_dssp CEEECCCTTCEECEETTEECCBCCCCSCGGGSCTHHH------HC--------SSBCHHHHHHHHHHHHHHHHHHSSCSC
T ss_pred CEEEccchhheeeccCCccccccceeeCcCccCHhHh------cC--------CCCCCCceeeeHhHHHHHHHHhCCCCC
Confidence 46777 778777655444457789999999999999 22 122357899999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
......... ........ ...........++.+++.+||+.+|.+||++.++.+
T Consensus 207 ~~~~~~~~~----------------~~~~~~~~--~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~ 259 (271)
T d1nvra_ 207 DQPSDSCQE----------------YSDWKEKK--TYLNPWKKIDSAPLALLHKILVENPSARITIPDIKK 259 (271)
T ss_dssp SSSSTTSHH----------------HHHHHTTC--TTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCChHHHH----------------HHHHhcCC--CCCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 653322000 00000000 001111223445889999999999999999887543
|
| >d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase wnk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.9e-18 Score=159.76 Aligned_cols=109 Identities=14% Similarity=0.171 Sum_probs=74.7
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.+|+. |+|+..... ..+.+.|||.|||||++ .+++++++|||||||+||||+||+ ||
T Consensus 153 ~~Kl~DFGla~~~~~~----~~~~~~GT~~Y~aPE~~----------------~~~~~~~~DIwSlGvilyel~~g~~Pf 212 (270)
T d1t4ha_ 153 SVKIGDLGLATLKRAS----FAKAVIGTPEFMAPEMY----------------EEKYDESVDVYAFGMCMLEMATSEYPY 212 (270)
T ss_dssp CEEECCTTGGGGCCTT----SBEESCSSCCCCCGGGG----------------GTCCCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred CEEEeecCcceeccCC----ccCCcccCccccCHHHh----------------CCCCCCcCchhhHHHHHHHHHHCCCCC
Confidence 35676 777644433 35678999999999998 235789999999999999999999 99
Q ss_pred hHHHh-hhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELI-DYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..... ..+. +.+.... .+........+++.+++.+||+.+|++||++.++.+
T Consensus 213 ~~~~~~~~~~-----------------~~i~~~~--~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~ell~ 265 (270)
T d1t4ha_ 213 SECQNAAQIY-----------------RRVTSGV--KPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 265 (270)
T ss_dssp TTCSSHHHHH-----------------HHHTTTC--CCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCcccHHHHH-----------------HHHHcCC--CCcccCccCCHHHHHHHHHHccCCHhHCcCHHHHhC
Confidence 64321 1110 0000000 011122234556999999999999999999887654
|
| >d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Mycobacterial protein kinase PknB, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.69 E-value=1.4e-18 Score=162.14 Aligned_cols=103 Identities=21% Similarity=0.275 Sum_probs=65.1
Q ss_pred hhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhhhhccccCCCchh
Q 008820 31 FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYIRCVSTKASDDNI 109 (552)
Q Consensus 31 ~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~ 109 (552)
......|||.|||||++ .| ..+++++|||||||+||||+||+ ||.+.+...+.
T Consensus 170 ~~~~~~Gt~~Y~aPE~~------~~---------~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~----------- 223 (277)
T d1o6ya_ 170 QTAAVIGTAQYLSPEQA------RG---------DSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVA----------- 223 (277)
T ss_dssp ---------TTCCHHHH------TT---------CCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH-----------
T ss_pred ccccccCcccccCHHHH------cC---------CCCCcceecccchHHHHHHHhCCCCCCCcCHHHHH-----------
Confidence 36678999999999999 33 56788999999999999999999 99765433211
Q ss_pred hhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCc-chhhHHHHHHhh
Q 008820 110 ACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRP-LLTNVWKCIREL 165 (552)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~-~~~~~~~~l~~~ 165 (552)
.+.... .+..+.......+.++.+++.+||+.+|.+|| ++.++.+.+.++
T Consensus 224 -----~~~~~~-~~~~~~~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r~ 274 (277)
T d1o6ya_ 224 -----YQHVRE-DPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRV 274 (277)
T ss_dssp -----HHHHHC-CCCCGGGTSSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred -----HHHHhc-CCCCCchhccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHHHHHH
Confidence 000000 00011122223445699999999999999999 577877776664
|
| >d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fl cytokine receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.8e-18 Score=164.90 Aligned_cols=118 Identities=18% Similarity=0.229 Sum_probs=84.3
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~- 87 (552)
-.+|++ |+|+.+.........+...|||.|||||++. ...+++++|||||||+||||+| |+
T Consensus 201 ~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~---------------~~~~~~~~DiwS~Gvil~emlt~g~~ 265 (325)
T d1rjba_ 201 KVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLF---------------EGIYTIKSDVWSYGILLWEIFSLGVN 265 (325)
T ss_dssp TEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHH---------------HCCCCHHHHHHHHHHHHHHHTTTSCC
T ss_pred CeEEEeeccccccccCCCceeeeccccCCCccCChHHHc---------------CCCCCcceeccchhHHHHHHHhCCCC
Confidence 357887 8888877766555577889999999999992 3567899999999999999998 89
Q ss_pred CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHH
Q 008820 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (552)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~ 163 (552)
||.+....... .+..... ...+.+...+.++.+++.+||+.+|.+||++.++.+.|.
T Consensus 266 Pf~~~~~~~~~----------------~~~~~~~---~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~ 322 (325)
T d1rjba_ 266 PYPGIPVDANF----------------YKLIQNG---FKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLG 322 (325)
T ss_dssp SSTTCCCSHHH----------------HHHHHTT---CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCCCCCHHHHH----------------HHHHhcC---CCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHh
Confidence 99764322100 0000000 000111223446999999999999999999999988764
|
| >d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: pak1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=6.5e-18 Score=157.81 Aligned_cols=112 Identities=15% Similarity=0.231 Sum_probs=77.3
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
+|+. |+|+.+...... .....|||.|||||++ .| ..+++++|||||||+||||+||+ ||.
T Consensus 155 vkl~DFG~a~~~~~~~~~--~~~~~gt~~Y~aPE~~------~~---------~~~~~~~DiwSlGvilyemltG~~Pf~ 217 (293)
T d1yhwa1 155 VKLTDFGFCAQITPEQSK--RSTMVGTPYWMAPEVV------TR---------KAYGPKVDIWSLGIMAIEMIEGEPPYL 217 (293)
T ss_dssp EEECCCTTCEECCSTTCC--BCCCCSCGGGCCHHHH------SS---------SCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred Eeeccchhheeecccccc--ccccccCCCccChhhh------cC---------CCCCchhceehHhHHHHHHhhCCCCCC
Confidence 5666 778877655433 6778999999999999 33 56789999999999999999999 996
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
+.+..... ........+ ..........++.+++.+||+.+|.+||++.++.+
T Consensus 218 ~~~~~~~~----------------~~~~~~~~~--~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 269 (293)
T d1yhwa1 218 NENPLRAL----------------YLIATNGTP--ELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQ 269 (293)
T ss_dssp TSCHHHHH----------------HHHHHHCSC--CCSSGGGSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred CCCHHHHH----------------HHHHhCCCC--CCCCcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 64332110 000000000 00111123446999999999999999999887644
|
| >d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Death-associated protein kinase, Dap species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2e-18 Score=162.27 Aligned_cols=113 Identities=16% Similarity=0.197 Sum_probs=77.7
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+|+.+..... .....||+.|||||++ . ...++.++|||||||+||||+||+ ||
T Consensus 155 ~vkl~DfG~a~~~~~~~~---~~~~~~t~~y~APE~~------~---------~~~~~~~~DiwSlGvilyell~g~~Pf 216 (293)
T d1jksa_ 155 RIKIIDFGLAHKIDFGNE---FKNIFGTPEFVAPEIV------N---------YEPLGLEADMWSIGVITYILLSGASPF 216 (293)
T ss_dssp CEEECCCTTCEECTTSCB---CSCCCCCGGGCCHHHH------T---------TCCBCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred ceEecchhhhhhcCCCcc---ccccCCCCcccCHHHH------c---------CCCCCCcccchhhhHHHHHHHcCCCCC
Confidence 45666 77777765543 5678999999999999 2 255789999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+.+...+. ..+.......+.......+.++.+++.+||+.+|.+||++.++.+
T Consensus 217 ~~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 270 (293)
T d1jksa_ 217 LGDTKQETL-----------------ANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 270 (293)
T ss_dssp CCSSHHHHH-----------------HHHHTTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CCCCHHHHH-----------------HHHHhcCCCCCchhcCCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 764433210 000000000011111223445889999999999999999888755
|
| >d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Vascular endothelial growth factor receptor 2 (kdr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=4.8e-18 Score=160.41 Aligned_cols=121 Identities=16% Similarity=0.225 Sum_probs=81.9
Q ss_pred hhhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-
Q 008820 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (552)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~- 87 (552)
.-.+|++ |+|+.+.........+...||+.|||||++. ...++.++|||||||+||||+||.
T Consensus 170 ~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~---------------~~~~~~~sDiwS~Gvil~ellt~~~ 234 (299)
T d1ywna1 170 KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIF---------------DRVYTIQSDVWSFGVLLWEIFSLGA 234 (299)
T ss_dssp GGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CCcEEEccCcchhhccccccccccCceeeCccccchhHhh---------------cCCCCcccceeehHHHHHHHHhCCC
Confidence 3467888 8888776655544567889999999999992 255678999999999999999975
Q ss_pred -CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 88 -QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 88 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
||....... .....+.... ........+++.+++.+||+.+|.+||++.++.+.+..+
T Consensus 235 ~p~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~L~~i 294 (299)
T d1ywna1 235 SPYPGVKIDE--------------------EFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 294 (299)
T ss_dssp CSSTTCCCSH--------------------HHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHH--------------------HHHHHHhcCCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence 776533220 0001110000 111122445699999999999999999999999988876
Q ss_pred h
Q 008820 166 I 166 (552)
Q Consensus 166 ~ 166 (552)
+
T Consensus 295 l 295 (299)
T d1ywna1 295 L 295 (299)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: epha2 receptor tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=9.1e-18 Score=156.78 Aligned_cols=121 Identities=15% Similarity=0.113 Sum_probs=74.8
Q ss_pred hhhhcc--cccccccccch-hhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-
Q 008820 12 SVAKVG--CVGSRICDKEV-GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~- 87 (552)
-.+|++ |+|+.+..... ..-.+...||+.|||||++ . ...+++++|||||||+||||+||.
T Consensus 147 ~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l------~---------~~~~~~~sDI~S~Gvil~el~t~~~ 211 (283)
T d1mqba_ 147 LVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAI------S---------YRKFTSASDVWSFGIVMWEVMTYGE 211 (283)
T ss_dssp CCEEECCCCC-----------------CCCGGGSCHHHH------H---------SCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred CeEEEcccchhhcccCCCccceEeccCCCCccccCHHHH------c---------cCCCCCcccccccHHHHHHHHhCCC
Confidence 368888 88877765433 2235567899999999999 2 356788999999999999999977
Q ss_pred CchH-HHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 88 QFTK-ELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 88 pf~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
||.. .....+ ...+.... .+.....+.++.+++.+|++.+|++||++.++.+.+.++
T Consensus 212 ~~~~~~~~~~~---------------------~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~eil~~L~~l 270 (283)
T d1mqba_ 212 RPYWELSNHEV---------------------MKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKL 270 (283)
T ss_dssp CTTTTCCHHHH---------------------HHHHHTTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred CccccCCHHHH---------------------HHHHhccCCCCCchhhHHHHHHHHHHHCcCCHhHCcCHHHHHHHHHHH
Confidence 6533 221111 11110000 011112344599999999999999999999999988877
Q ss_pred hcC
Q 008820 166 IIK 168 (552)
Q Consensus 166 ~~~ 168 (552)
...
T Consensus 271 ~~~ 273 (283)
T d1mqba_ 271 IRA 273 (283)
T ss_dssp HHS
T ss_pred hhC
Confidence 643
|
| >d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.66 E-value=1.2e-17 Score=158.10 Aligned_cols=101 Identities=14% Similarity=0.080 Sum_probs=72.4
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+|+.+... ...+.|||.|||||++ .| ..+++++|||||||+||||+||+ ||
T Consensus 142 ~vkL~DFG~a~~~~~~-----~~~~~Gt~~Y~APE~l------~~---------~~y~~~~DiwSlGvilyemltG~~Pf 201 (316)
T d1fota_ 142 HIKITDFGFAKYVPDV-----TYTLCGTPDYIAPEVV------ST---------KPYNKSIDWWSFGILIYEMLAGYTPF 201 (316)
T ss_dssp CEEECCCSSCEECSSC-----BCCCCSCTTTCCHHHH------TT---------CCBCTTHHHHHHHHHHHHHHHSSCTT
T ss_pred CEEEecCccceEeccc-----cccccCcccccCHHHH------cC---------CCCCchhhccccchhHHHHHhCCCCC
Confidence 35666 778777655 4568999999999999 33 55789999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcc
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPL 154 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~ 154 (552)
.+.+...+ ...+.......+.....++.+++.+||+.+|.+|++
T Consensus 202 ~~~~~~~~---------------------~~~i~~~~~~~p~~~s~~~~~li~~~L~~dp~~R~~ 245 (316)
T d1fota_ 202 YDSNTMKT---------------------YEKILNAELRFPPFFNEDVKDLLSRLITRDLSQRLG 245 (316)
T ss_dssp CCSSHHHH---------------------HHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTTCTT
T ss_pred CCcCHHHH---------------------HHHHHcCCCCCCCCCCHHHHHHHHHHhhhCHHhccc
Confidence 76543311 111111111111223456999999999999999974
|
| >d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Pkb kinase (Akt-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.1e-17 Score=159.49 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=75.5
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+|+.+...... ...++|||.|||||++ .| ..+++++|||||||+||||++|+ ||
T Consensus 143 ~vkl~DFG~a~~~~~~~~~--~~~~~GT~~Y~aPE~~------~~---------~~y~~~~DiwSlGvilyeml~G~~pf 205 (337)
T d1o6la_ 143 HIKITDFGLCKEGISDGAT--MKTFCGTPEYLAPEVL------ED---------NDYGRAVDWWGLGVVMYEMMCGRLPF 205 (337)
T ss_dssp CEEECCCTTCBCSCCTTCC--BCCCEECGGGCCGGGG------SS---------SCBCTTHHHHHHHHHHHHHHHSSCSS
T ss_pred CEEEeecccccccccCCcc--cccceeCHHHhhhhhc------cC---------CCCChhhcccchhhHHHHHHHCCCCC
Confidence 34666 778776554432 6778999999999999 33 56789999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcch
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~ 155 (552)
.+.+...+. ..........+....+++.+++.+||+++|.+|++.
T Consensus 206 ~~~~~~~~~---------------------~~i~~~~~~~p~~~s~~~~dli~~~L~~dP~~R~~~ 250 (337)
T d1o6la_ 206 YNQDHERLF---------------------ELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGG 250 (337)
T ss_dssp CCSSHHHHH---------------------HHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred CCcCHHHHH---------------------HHHhcCCCCCCccCCHHHHHHHHhhccCCchhhccc
Confidence 775544221 111111111122345569999999999999999973
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=3.5e-14 Score=135.39 Aligned_cols=272 Identities=13% Similarity=0.149 Sum_probs=171.4
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEE--eCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCce
Q 008820 264 FLFSSSFDKSIHVWSLKDFSHVHTF--KGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWR 341 (552)
Q Consensus 264 ~l~s~s~dg~I~iwd~~~~~~~~~~--~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 341 (552)
.+++++.|++|++|++++...+..+ ..|.+.+..++|+|++..+++++..|+.|++|++................. .
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~-~ 84 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S 84 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC-C
Confidence 4577889999999998765333222 358889999999999887778888899999999986544332222111111 1
Q ss_pred eeeEEEEeeCCCEEEEeeC-CCcEEEEECCCCceeEE--ecCCCCCeEEEEEe-C-CEEEEEe-CCCcEEEEECCCCcee
Q 008820 342 YSGIHALTTSGRYLYTGSG-DRTIKAWSLLDGTLSCT--MSGHKSAVSTLAVC-N-GVLYSGS-RDGTIRLWSLSDHSLL 415 (552)
Q Consensus 342 ~~~~~~~~~~~~~l~sgs~-dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~-~-~~l~s~~-~dg~i~iwd~~~~~~~ 415 (552)
..-.+++++|+++++++. ++.|.+|+......... ...+...+.++.++ + ..+++++ .+..|.+|+.......
T Consensus 85 -p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (333)
T d1ri6a_ 85 -LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 163 (333)
T ss_dssp -CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred -ceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcc
Confidence 123589999998888875 67899998876654433 34567778889998 3 3555555 5667999998775433
Q ss_pred EEE-----ecCCCCceEEEEEEcCCCCEEEEEE-CCCcEEEEeCCcc------eeeee------cccceEE--EEEecCC
Q 008820 416 TVL-----EEDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRNDKF------MKSMQ------THKGSVF--AVFLEGK 475 (552)
Q Consensus 416 ~~~-----~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~------~~~~~------~h~~~v~--~v~~~~~ 475 (552)
... ... .+.....+++++++..++... ..+...+|+.... ..... ....... .++++++
T Consensus 164 ~~~~~~~~~~~-~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 242 (333)
T d1ri6a_ 164 VAQDPAEVTTV-EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 242 (333)
T ss_dssp EEEEEEEEECS-TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred eeeeceeeeee-cCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccC
Confidence 221 222 222333478999998877665 4566777764321 11111 1112223 3445887
Q ss_pred EEEEE-eCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-Ce-EEEEe-CCCeEEEEEecCCc
Q 008820 476 WLFTG-GWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-GK-LFVGC-ADRTVKIALCNRQI 540 (552)
Q Consensus 476 ~l~sg-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~-l~s~s-~Dg~v~iw~~~~~~ 540 (552)
+++.. ..++.+.+|++............ ......+.+++|+| ++ |++++ .++.|++|+++...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~t 309 (333)
T d1ri6a_ 243 HLYACDRTASLITVFSVSEDGSVLSKEGF--QPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQ 309 (333)
T ss_dssp EEEEEETTTTEEEEEEECTTSCCEEEEEE--EECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTT
T ss_pred ceeeecccCCeEEEEEEcCCCCEEEEEEE--eCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCC
Confidence 66654 55789999998754332221111 11134467789994 43 66654 56899999887543
|
| >d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: Caenorhabditis elegans, pjk4 [TaxId: 6239]
Probab=99.65 E-value=4.4e-18 Score=163.26 Aligned_cols=113 Identities=22% Similarity=0.198 Sum_probs=78.2
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+|+.+..... .....|||.|||||++ .| ..++.++|||||||+||||+||+ ||
T Consensus 164 ~vkL~DFG~a~~~~~~~~---~~~~~gT~~Y~aPEv~------~~---------~~~~~~~DiwSlGvilyell~G~~Pf 225 (350)
T d1koaa2 164 ELKLIDFGLTAHLDPKQS---VKVTTGTAEFAAPEVA------EG---------KPVGYYTDMWSVGVLSYILLSGLSPF 225 (350)
T ss_dssp CEEECCCTTCEECCTTSC---EEEECSCTTTCCHHHH------HT---------CCBCHHHHHHHHHHHHHHHHHSSCSS
T ss_pred eEEEeecchheecccccc---cceecCcccccCHHHH------cC---------CCCChhHhhhhhhHHHHHHHhCCCCC
Confidence 45666 77877765543 5678999999999999 22 45678999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+.+...+. ..+.......+.........++.+++.+||+.+|.+||++.++.+
T Consensus 226 ~~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~ 279 (350)
T d1koaa2 226 GGENDDETL-----------------RNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALE 279 (350)
T ss_dssp CCSSHHHHH-----------------HHHHHTCCCSCCGGGGGCCHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred CCCCHHHHH-----------------HHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 765433110 001000000011111223445899999999999999999888765
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.65 E-value=4.5e-14 Score=135.14 Aligned_cols=269 Identities=10% Similarity=0.013 Sum_probs=178.9
Q ss_pred eeecCcceEEEeeCCCeEEEEEe---------e-cCccceEEEEEc--CCEE-EEEeCCCcEEEEeCCCCeEEEEEeCCC
Q 008820 226 RAAGGVKDLVNGLSKGNVKFKDL---------Q-GHRDCVTGLAVG--GGFL-FSSSFDKSIHVWSLKDFSHVHTFKGHD 292 (552)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~l---------~-~H~~~V~~l~~s--~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~h~ 292 (552)
+++++++.++++..++.+.+|++ . .|...+.+++|+ |+++ ++++.++.|++||+.+++.+..+....
T Consensus 3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~ 82 (346)
T d1jmxb_ 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 82 (346)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccc
Confidence 35567778888888888887774 2 355678899998 7776 566688999999999999998876433
Q ss_pred ------CCeEEEEEecCCCCEEEEE-----------cCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEE
Q 008820 293 ------HKVMAVVYVDEDQPLCISG-----------DSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYL 355 (552)
Q Consensus 293 ------~~v~~v~~~~~~~~~l~s~-----------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 355 (552)
..+..++|+|++..++++. ..++.+.+|+..++.....+........ ......+.++..+
T Consensus 83 ~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 159 (346)
T d1jmxb_ 83 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQ---VYLMRAADDGSLY 159 (346)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSS---CCCEEECTTSCEE
T ss_pred cccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCc---eEEEEecCCCEEE
Confidence 2356789999887665543 2578899999887655444433322211 1223445555555
Q ss_pred EEeeCCCcEEEEECCCCceeEEecCCCCC---------------------eEEEE--Ee----CCEEEEEeCCCcEEEEE
Q 008820 356 YTGSGDRTIKAWSLLDGTLSCTMSGHKSA---------------------VSTLA--VC----NGVLYSGSRDGTIRLWS 408 (552)
Q Consensus 356 ~sgs~dg~i~iwd~~~~~~~~~~~~h~~~---------------------v~~l~--~~----~~~l~s~~~dg~i~iwd 408 (552)
+++ +.+.+||+.+++.+..+..+... +.... .. ...+.++..++.+.+||
T Consensus 160 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
T d1jmxb_ 160 VAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 236 (346)
T ss_dssp EES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEE
Confidence 543 45899999999888877543211 11000 00 11445566677899999
Q ss_pred CCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--ceeeeecccceEEEEE--ecCCEEEEEeCCC
Q 008820 409 LSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAVF--LEGKWLFTGGWDK 484 (552)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~~~~~h~~~v~~v~--~~~~~l~sgs~dg 484 (552)
+.++.........+...... ..+++++..++.... +.|++||... .+..+. +...+.+++ +||++|++++.|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~ 313 (346)
T d1jmxb_ 237 LKTGKTHTQEFADLTELYFT-GLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFN 313 (346)
T ss_dssp TTTCCEEEEEEEECSSCEEE-EEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSS
T ss_pred CCCCceEEEEeecccceeEE-EEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCC
Confidence 99988766655444444554 467777777776654 5799999654 344443 233455555 4999999999999
Q ss_pred eEEEEecCCCeeeeeeccC
Q 008820 485 TVSVQELAGDEFEEDVIPT 503 (552)
Q Consensus 485 ~i~iwd~~~~~~~~~~~~~ 503 (552)
.|++||+.+.+........
T Consensus 314 ~v~v~D~~t~~~i~~i~~p 332 (346)
T d1jmxb_ 314 DLAVFNPDTLEKVKNIKLP 332 (346)
T ss_dssp EEEEEETTTTEEEEEEECS
T ss_pred cEEEEECccCCEEEEEECC
Confidence 9999999998887765543
|
| >d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: cAMP-dependent PK, catalytic subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.65 E-value=1.6e-17 Score=159.48 Aligned_cols=100 Identities=15% Similarity=0.119 Sum_probs=72.4
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+|+.+... ...+.|||.|||||++ .| ..+++++|||||||+||||+||+ ||
T Consensus 179 ~ikL~DFG~a~~~~~~-----~~~~~Gt~~Y~APE~~------~~---------~~~~~~~DiwSlGvilyemltG~~Pf 238 (350)
T d1rdqe_ 179 YIQVTDFGFAKRVKGR-----TWTLCGTPEALAPEII------LS---------KGYNKAVDWWALGVLIYEMAAGYPPF 238 (350)
T ss_dssp CEEECCCTTCEECSSC-----BCCCEECGGGCCHHHH------TT---------CCBCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred CEEeeeceeeeecccc-----cccccCccccCCHHHH------cC---------CCCCccccccchhHHHHHHHhCCCCC
Confidence 35666 788887765 4568999999999999 33 55779999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCc
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRP 153 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~ 153 (552)
.+.+...+ ...+.......+....+++.+++.+||+.+|.+|+
T Consensus 239 ~~~~~~~~---------------------~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~kR~ 281 (350)
T d1rdqe_ 239 FADQPIQI---------------------YEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRF 281 (350)
T ss_dssp CCSSHHHH---------------------HHHHHHCCCCCCTTCCHHHHHHHHHHSCSCTTTCT
T ss_pred CCcCHHHH---------------------HHHHhcCCCCCCccCCHHHHHHHHHHhhhCHHhcc
Confidence 76543311 11111111111223455699999999999999996
|
| >d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.1e-17 Score=159.09 Aligned_cols=61 Identities=23% Similarity=0.477 Sum_probs=47.8
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+|+.+.+. ..+.++||+.|||||++ .| ..+++++|||||||+||||+||+ ||
T Consensus 143 ~vkl~DFGla~~~~~~----~~~~~~GT~~Y~APEvl------~~---------~~y~~~~DiWSlGvil~ell~G~~Pf 203 (322)
T d1s9ja_ 143 EIKLCDFGVSGQLIDS----MANSFVGTRSYMSPERL------QG---------THYSVQSDIWSMGLSLVEMAVGRYPI 203 (322)
T ss_dssp CEEECCCCCCHHHHHH----TC---CCSSCCCCHHHH------HC---------SCCCTTHHHHHHHHHHHHHHHSSCCS
T ss_pred CEEEeeCCCccccCCC----ccccccCCccccCchHH------cC---------CCCCcHHHHHHHHHHHHHHHHCCCCC
Confidence 46776 788766554 25678999999999999 33 56789999999999999999999 99
Q ss_pred hHH
Q 008820 90 TKE 92 (552)
Q Consensus 90 ~~~ 92 (552)
.+.
T Consensus 204 ~~~ 206 (322)
T d1s9ja_ 204 PPP 206 (322)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
|
| >d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase C, theta type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.4e-17 Score=157.90 Aligned_cols=107 Identities=13% Similarity=0.125 Sum_probs=75.9
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++.+..... ..+...||+.|||||++ . ...+++++|||||||+||||+||+ ||.
T Consensus 142 ~kl~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwSlGvilyemltG~~PF~ 204 (320)
T d1xjda_ 142 IKIADFGMCKENMLGDA--KTNTFCGTPDYIAPEIL------L---------GQKYNHSVDWWSFGVLLYEMLIGQSPFH 204 (320)
T ss_dssp EEECCCTTCBCCCCTTC--CBCCCCSCGGGCCHHHH------T---------TCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred eeccccchhhhcccccc--cccccCCCCCcCCHHHH------c---------CCCCCchhhhhhhhHHHHHHHhCCCCCC
Confidence 3555 66766654443 26678999999999999 3 356789999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchh-hH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLT-NV 158 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~-~~ 158 (552)
+.+...+. ..+.......+.....++.+++.+||+.+|.+||++. ++
T Consensus 205 ~~~~~~~~---------------------~~i~~~~~~~p~~~s~~~~dli~~~L~~dP~~R~s~~~~l 252 (320)
T d1xjda_ 205 GQDEEELF---------------------HSIRMDNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDI 252 (320)
T ss_dssp CSSHHHHH---------------------HHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCG
T ss_pred CCCHHHHH---------------------HHHHcCCCCCCccCCHHHHHHHHHhcccCCCCCcCHHHHH
Confidence 75544221 1111111111122455699999999999999999975 54
|
| >d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: STE20-like serine/threonine-protein kinase, SLK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.1e-17 Score=154.13 Aligned_cols=117 Identities=13% Similarity=0.131 Sum_probs=76.4
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+|+.+..... -.+...|||.|||||++.... .....+++++|||||||+||||+||+ ||.
T Consensus 149 ~Kl~DFG~a~~~~~~~~--~~~~~~Gt~~y~APE~l~~~~----------~~~~~y~~k~DiwSlGvilyemltg~~Pf~ 216 (288)
T d2jfla1 149 IKLADFGVSAKNTRTIQ--RRDSFIGTPYWMAPEVVMCET----------SKDRPYDYKADVWSLGITLIEMAEIEPPHH 216 (288)
T ss_dssp EEECCCTTCEECHHHHH--HHTCCCSCCTTCCHHHHTTCS----------TTTSSTTTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred EEEEechhhhccCCCcc--cccccccccccCCHHHHhhcc----------cCCCCCChhhhHHHHHHHHHHHhhCCCCCC
Confidence 4666 66766554432 266789999999999982111 11345678999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
+.+...+. ..+....+. ..........++.+++.+||+.+|.+||++.++.+
T Consensus 217 ~~~~~~~~-----------------~~i~~~~~~-~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~ell~ 268 (288)
T d2jfla1 217 ELNPMRVL-----------------LKIAKSEPP-TLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQ 268 (288)
T ss_dssp TSCGGGHH-----------------HHHHHSCCC-CCSSGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCCHHHHH-----------------HHHHcCCCC-CCCccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 64433110 000000000 00111123446899999999999999999887644
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.65 E-value=4.1e-14 Score=136.36 Aligned_cols=277 Identities=12% Similarity=0.040 Sum_probs=180.9
Q ss_pred CCEEEEE-----eCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEE---------cCCCcEEEEeCCCCCC
Q 008820 262 GGFLFSS-----SFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISG---------DSGGGIFVWSFSFPLG 327 (552)
Q Consensus 262 ~~~l~s~-----s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~---------~~dg~i~vwd~~~~~~ 327 (552)
++.++.. ..+++|.+||..+++.+.++..+..+ .++|+|++..++++. +.|+.|++||..+++.
T Consensus 13 g~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~ 90 (355)
T d2bbkh_ 13 ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP 90 (355)
T ss_dssp TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred CCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCE
Confidence 5555543 34567999999999999998876554 799999998776553 4588999999998765
Q ss_pred CccccccccCCCc--eeeeEEEEeeCCCEEEEe--eCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEeCCCc
Q 008820 328 HEPLKKWNEEKDW--RYSGIHALTTSGRYLYTG--SGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGT 403 (552)
Q Consensus 328 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~sg--s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~ 403 (552)
...+......... .......++++++.++++ +.+..+.+||..+++.+..+..+... ..........++.+.|+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~dg~ 169 (355)
T d2bbkh_ 91 TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY-HIFPTAPDTFFMHCRDGS 169 (355)
T ss_dssp EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE-EEEEEETTEEEEEETTSC
T ss_pred EEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcc-eEeecCCcceEEEcCCCC
Confidence 4443322221110 011234789999977665 45678999999999998888654432 222222446666777877
Q ss_pred EEEEECCCCceeEEEecC-----CCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcc----eeeeecc-----------
Q 008820 404 IRLWSLSDHSLLTVLEED-----SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKF----MKSMQTH----------- 463 (552)
Q Consensus 404 i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~h----------- 463 (552)
..++..........+... ....... ..+.+++..++.++.++.+++|+.... +.....+
T Consensus 170 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p 248 (355)
T d2bbkh_ 170 LAKVAFGTEGTPEITHTEVFHPEDEFLINH-PAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP 248 (355)
T ss_dssp EEEEECCSSSCCEEEECCCCSCTTSCBCSC-CEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE
T ss_pred EEEEEecCCCeEEEEecccccceecceeee-ccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeec
Confidence 777766554443333221 1111222 356777888888999999999996531 1111111
Q ss_pred -cceEEEEEecCCEEEEEeCC----------CeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-Ce---EEEEeCC
Q 008820 464 -KGSVFAVFLEGKWLFTGGWD----------KTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-GK---LFVGCAD 528 (552)
Q Consensus 464 -~~~v~~v~~~~~~l~sgs~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~---l~s~s~D 528 (552)
......+++++..++..+.+ ..|.+||..+++....+.. ...+.+++|++ +. +++++.|
T Consensus 249 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~------~~~~~~~a~spDG~~~l~v~~~~d 322 (355)
T d2bbkh_ 249 GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM------GHEIDSINVSQDEKPLLYALSTGD 322 (355)
T ss_dssp CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE------EEEECEEEECCSSSCEEEEEETTT
T ss_pred cceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC------CCCEEEEEEcCCCCeEEEEEECCC
Confidence 11234555688877765543 3699999998876655443 34578899995 32 4567789
Q ss_pred CeEEEEEecCCcceeEEEecc
Q 008820 529 RTVKIALCNRQIPEIFSLLLH 549 (552)
Q Consensus 529 g~v~iw~~~~~~~~~~~~~gh 549 (552)
+.|++||.. +++.+.++.++
T Consensus 323 ~~i~v~D~~-tg~~~~~i~~~ 342 (355)
T d2bbkh_ 323 KTLYIHDAE-SGEELRSVNQL 342 (355)
T ss_dssp TEEEEEETT-TCCEEEEECCC
T ss_pred CEEEEEECC-CCCEEEEEeCc
Confidence 999999998 67778887654
|
| >d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: ephb2 receptor tyrosine kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=2.2e-17 Score=155.09 Aligned_cols=120 Identities=15% Similarity=0.158 Sum_probs=72.8
Q ss_pred hhhcc--cccccccccchh---hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-C
Q 008820 13 VAKVG--CVGSRICDKEVG---LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-G 86 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~---~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g 86 (552)
.+|++ |+|+.+...... .-.....||+.|||||++ . ...+++++|||||||+||||+| |
T Consensus 166 ~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~------~---------~~~~~~~sDvwS~Gvvl~el~t~g 230 (299)
T d1jpaa_ 166 VCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAI------Q---------YRKFTSASDVWSYGIVMWEVMSYG 230 (299)
T ss_dssp CEEECCC-----------------------CGGGSCHHHH------H---------SCCCCHHHHHHHHHHHHHHHHTTS
T ss_pred cEEECCcccceEccCCCCcceeeecccccCCccccCHHHH------h---------cCCCCcccccccchHHHHHHHhCC
Confidence 57887 788777654432 123346789999999998 2 3567889999999999999998 8
Q ss_pred C-CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHh
Q 008820 87 E-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (552)
Q Consensus 87 ~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~ 164 (552)
+ ||...+...+. ..+.... .+.......++.+++.+||+.+|.+||++.++.+.+.+
T Consensus 231 ~~Pf~~~~~~~~~---------------------~~i~~~~~~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~L~~ 289 (299)
T d1jpaa_ 231 ERPYWDMTNQDVI---------------------NAIEQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDK 289 (299)
T ss_dssp CCTTTTCCHHHHH---------------------HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHH---------------------HHHHcCCCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHH
Confidence 9 99764433111 0000000 01111234458999999999999999999999999888
Q ss_pred hhcC
Q 008820 165 LIIK 168 (552)
Q Consensus 165 ~~~~ 168 (552)
+++.
T Consensus 290 ~l~~ 293 (299)
T d1jpaa_ 290 MIRN 293 (299)
T ss_dssp HHHS
T ss_pred HhcC
Confidence 7643
|
| >d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase ZAP-70 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.5e-17 Score=154.82 Aligned_cols=119 Identities=15% Similarity=0.082 Sum_probs=82.8
Q ss_pred hhhcc--cccccccccchh-hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-
Q 008820 13 VAKVG--CVGSRICDKEVG-LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~- 87 (552)
.+|++ |+|+.+...... ...+...||+.|||||++. ...+++++|||||||+||||+| |+
T Consensus 147 ~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---------------~~~~~~ksDVwS~Gv~l~E~lt~G~~ 211 (285)
T d1u59a_ 147 YAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECIN---------------FRKFSSRSDVWSYGVTMWEALSYGQK 211 (285)
T ss_dssp EEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHH---------------HCEECHHHHHHHHHHHHHHHHTTSCC
T ss_pred ceeeccchhhhcccccccccccccccccCccccChHHHh---------------CCCCCccchhhcchHHHHHHHhCCCC
Confidence 57777 778777654432 2345678999999999992 2567799999999999999998 89
Q ss_pred CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
||.......+. ..+... .....+...+.++.+++.+||+.+|.+||++.++.+.+...+
T Consensus 212 Pf~~~~~~~~~-----------------~~i~~~---~~~~~p~~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~~ 270 (285)
T d1u59a_ 212 PYKKMKGPEVM-----------------AFIEQG---KRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACY 270 (285)
T ss_dssp TTTTCCTHHHH-----------------HHHHTT---CCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHH-----------------HHHHcC---CCCCCCCcCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence 99764433211 000000 000111223456999999999999999999999988777654
|
| >d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase Itk/Tsk species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.8e-17 Score=152.98 Aligned_cols=118 Identities=16% Similarity=0.208 Sum_probs=71.2
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhC-C-
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG-E- 87 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg-~- 87 (552)
-.+|++ |+|+.+...... -.....||+.|||||++ . ...++.++|||||||+||||+|+ +
T Consensus 138 ~~~Kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~l------~---------~~~~~~k~DVwS~Gvil~el~t~~~~ 201 (263)
T d1sm2a_ 138 QVIKVSDFGMTRFVLDDQYT-SSTGTKFPVKWASPEVF------S---------FSRYSSKSDVWSFGVLMWEVFSEGKI 201 (263)
T ss_dssp GCEEECSCC-------------------CTTSCCHHHH------T---------TCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCeEecccchheeccCCCce-eecceecCcccCChHHh------c---------CCCCCchhhhcchHHHHHHHHHCCCC
Confidence 457777 777776655432 24567899999999999 3 35678999999999999999996 4
Q ss_pred CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
||...+...+ ...+.... ...+.....++.+++.+|++.+|.+||++.++.+.+.++.
T Consensus 202 ~~~~~~~~~~---------------------~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~Rps~~~il~~L~~i~ 260 (263)
T d1sm2a_ 202 PYENRSNSEV---------------------VEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQLAEIA 260 (263)
T ss_dssp TTCSCCHHHH---------------------HHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHH---------------------HHHHHhcCCCCCccccCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHH
Confidence 5544332211 11111100 1111223456999999999999999999999999888764
|
| >d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Lymphocyte kinase (lck) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.4e-17 Score=154.46 Aligned_cols=118 Identities=14% Similarity=0.106 Sum_probs=81.2
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p 88 (552)
-.+|++ |+|+.+...+.. ..+...||+.|||||++. ...++.++|||||||+||||+||. |
T Consensus 146 ~~~Kl~DFGla~~~~~~~~~-~~~~~~gt~~y~APE~~~---------------~~~~~~~sDvwS~Gvvl~ellt~~~~ 209 (272)
T d1qpca_ 146 LSCKIADFGLARLIEDNEYT-AREGAKFPIKWTAPEAIN---------------YGTFTIKSDVWSFGILLTEIVTHGRI 209 (272)
T ss_dssp SCEEECCCTTCEECSSSCEE-CCTTCCCCTTTSCHHHHH---------------HCEECHHHHHHHHHHHHHHHHTTTCC
T ss_pred cceeeccccceEEccCCccc-cccccCCcccccChHHHh---------------CCCCCchhhhhhhHHHHHHHHhCCCC
Confidence 356777 788777655432 356788999999999992 255778999999999999999976 5
Q ss_pred c-hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 F-TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
+ .......+ ...+... ........+.++.+++.+||+.+|++||++.++.+.+....
T Consensus 210 ~~~~~~~~~~---------------------~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~~f 268 (272)
T d1qpca_ 210 PYPGMTNPEV---------------------IQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFF 268 (272)
T ss_dssp SSTTCCHHHH---------------------HHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHH---------------------HHHHHhcCCCCCcccChHHHHHHHHHHcCCCHhHCcCHHHHHHHhhhhh
Confidence 4 43222211 0111000 00111123446999999999999999999999988777654
|
| >d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tyrosine-protein kinase SYK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2.2e-17 Score=153.30 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=77.5
Q ss_pred hhhcc--cccccccccch-hhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-
Q 008820 13 VAKVG--CVGSRICDKEV-GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~- 87 (552)
.+|+. |+|+.+..... ........||+.|||||++. ...++.+||||||||+||||+| |+
T Consensus 145 ~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~---------------~~~~~~~sDiwS~Gv~l~ellt~g~~ 209 (277)
T d1xbba_ 145 YAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECIN---------------YYKFSSKSDVWSFGVLMWEAFSYGQK 209 (277)
T ss_dssp EEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHH---------------HCEEEHHHHHHHHHHHHHHHHTTTCC
T ss_pred cccccchhhhhhccccccccccccccCCCceecCchhhc---------------CCCCCchhhhccchhhhhHHhhCCCC
Confidence 45666 77776654332 12345678999999999992 2557789999999999999998 89
Q ss_pred CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
||.+.....+. ..+... ...+.+...+.++.+++.+|++.+|.+||++.++.+.+...
T Consensus 210 Pf~~~~~~~~~-----------------~~i~~~---~~~~~p~~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L~~~ 267 (277)
T d1xbba_ 210 PYRGMKGSEVT-----------------AMLEKG---ERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNY 267 (277)
T ss_dssp SSTTCCHHHHH-----------------HHHHTT---CCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHH-----------------HHHHcC---CCCCCCcccCHHHHHHHHHHcCCCHhHCcCHHHHHHHhhCH
Confidence 99764333211 000000 00011122345699999999999999999999987766654
|
| >d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: G-protein coupled receptor kinase 2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.64 E-value=1.4e-17 Score=160.78 Aligned_cols=107 Identities=16% Similarity=0.176 Sum_probs=73.5
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+|+.+.... .....|||.|||||++ .+ ...+++++|||||||+||||+||+ ||
T Consensus 145 ~iKl~DFGla~~~~~~~----~~~~~GT~~y~APE~~------~~--------~~~~~~~~DiwSlGvilyemltG~~Pf 206 (364)
T d1omwa3 145 HVRISDLGLACDFSKKK----PHASVGTHGYMAPEVL------QK--------GVAYDSSADWFSLGCMLFKLLRGHSPF 206 (364)
T ss_dssp CEEECCCTTCEECSSSC----CCSCCSCGGGCCHHHH------ST--------TCCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred cEEEeeeceeeecCCCc----ccccccccccchhHHh------hc--------CCCCCcccchhHHHHHHHHHHhCCCCC
Confidence 45666 7887776553 4567899999999998 21 234678999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcch
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~ 155 (552)
.......+. .........+...+....+++.+++.+||+.+|.+||+.
T Consensus 207 ~~~~~~~~~------------------~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~ 254 (364)
T d1omwa3 207 RQHKTKDKH------------------EIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGC 254 (364)
T ss_dssp CSSCSSCHH------------------HHHHHSSSCCCCCCSSSCHHHHHHHHHHTCSSTTTSTTT
T ss_pred CCCCHHHHH------------------HHHHhcccCCCCCCCCCCHHHHHHHHHHcccCHHHhCCC
Confidence 764322110 000110000111112244569999999999999999995
|
| >d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase activated protein kinase 2, mapkap2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=7.4e-18 Score=160.89 Aligned_cols=119 Identities=18% Similarity=0.254 Sum_probs=78.6
Q ss_pred hhhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-
Q 008820 11 KSVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (552)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~- 87 (552)
....|+. |+|+.+..... .....|||.|||||++ . ...+++++|||||||+||+|+||+
T Consensus 150 ~~~~Kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~------~---------~~~y~~~~DiwSlGvily~lltg~~ 211 (335)
T d2ozaa1 150 NAILKLTDFGFAKETTSHNS---LTTPCYTPYYVAPEVL------G---------PEKYDKSCDMWSLGVIMYILLCGYP 211 (335)
T ss_dssp TCCEEECCCTTCEECCCCCC---CCCCSCCCSSCCCCCC------C---------GGGGSHHHHHHHHHHHHHHHTTSSC
T ss_pred cccccccccceeeeccCCCc---cccccCCcccCCcHHH------c---------CCCCCHHHHHHhhchhHHHHhhCCC
Confidence 3456777 77877766543 5678999999999998 3 356789999999999999999999
Q ss_pred CchHHHhhhhh-hccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHH
Q 008820 88 QFTKELIDYIR-CVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKC 161 (552)
Q Consensus 88 pf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~ 161 (552)
||.+.+..... .+...... ..+. .+.......+.++.+++.+||+.+|.+||++.++.+.
T Consensus 212 Pf~~~~~~~~~~~~~~~i~~------~~~~--------~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~h 272 (335)
T d2ozaa1 212 PFYSNHGLAISPGMKTRIRM------GQYE--------FPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 272 (335)
T ss_dssp SCEETTCC--------CCCS------CSSS--------CCTTHHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHhc------CCCC--------CCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence 99765432110 00000000 0000 0000011123358899999999999999998887653
|
| >d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: EGF receptor tyrosine kinase, Erbb-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2e-17 Score=157.06 Aligned_cols=119 Identities=12% Similarity=0.118 Sum_probs=79.3
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
.+|++ |+|+.+...+.........||+.|||||++. .+.++.++|||||||+||||+| |+ |
T Consensus 149 ~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~---------------~~~~~~~sDvwS~Gvil~el~t~g~~p 213 (317)
T d1xkka_ 149 HVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESIL---------------HRIYTHQSDVWSYGVTVWELMTFGSKP 213 (317)
T ss_dssp EEEECCCSHHHHTTTTCC--------CCTTTSCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTSCCT
T ss_pred CeEeeccccceecccccccccccccccCccccChHHHh---------------cCCCChhhhhhhHHHHHHHHHHCCCCC
Confidence 46777 7777776655544466778999999999992 2567899999999999999999 77 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|.......+. ...... ...+.+.....++.+++.+|++.+|.+||++.++.+.+..+.
T Consensus 214 ~~~~~~~~~~-----------------~~i~~~---~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~eil~~l~~~~ 271 (317)
T d1xkka_ 214 YDGIPASEIS-----------------SILEKG---ERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMA 271 (317)
T ss_dssp TTTSCGGGHH-----------------HHHHHT---CCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHH-----------------HHHHcC---CCCCCCcccCHHHHHHHHHhCCCChhhCcCHHHHHHHHHHHH
Confidence 8764433211 011000 000111224456999999999999999999999988877654
|
| >d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=7.8e-17 Score=152.03 Aligned_cols=131 Identities=11% Similarity=0.038 Sum_probs=85.8
Q ss_pred hhhhhhhhhcc--cccccccccchh-----hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhh
Q 008820 7 RRVTKSVAKVG--CVGSRICDKEVG-----LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACI 79 (552)
Q Consensus 7 ~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~ 79 (552)
..+.....|+. |+|+.+...... .-.+.+.|||.|||||++ .| ..+++++|||||||+
T Consensus 138 ~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~------~~---------~~~~~~~DiwSlG~~ 202 (299)
T d1ckia_ 138 LGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTH------LG---------IEQSRRDDLESLGYV 202 (299)
T ss_dssp CGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHH------TT---------BCCCHHHHHHHHHHH
T ss_pred ccCCCceeeeeccCcceeccccccccceeccccCCcCCCccccCHHHH------hC---------CCCCChhhEEecCHH
Confidence 34444456665 778777654321 124678999999999999 33 557899999999999
Q ss_pred hhhhhhCC-CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHh-hhhcCccccHHHHHHhhcccCCCCCcchhh
Q 008820 80 LLSLLIGE-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLE-NKFGSEFVSLQLMFCQCLNFDPGCRPLLTN 157 (552)
Q Consensus 80 l~~lltg~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~ 157 (552)
||||+||+ ||......... .............+. ......+.++.+++.+|++.+|.+||+..+
T Consensus 203 l~el~tg~~P~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~p~~~~~li~~cl~~~p~~RP~~~~ 268 (299)
T d1ckia_ 203 LMYFNLGSLPWQGLKAATKR--------------QKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSY 268 (299)
T ss_dssp HHHHHHSSCTTCCCC---------------------HHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHSCTTCCCCHHH
T ss_pred HHHHHhCCCcccccchHHHH--------------HHHHHhhcccCCCChhHhccCCCHHHHHHHHHHccCChhHCcCHHH
Confidence 99999999 99653322100 001111111111111 122234556999999999999999999988
Q ss_pred HHHHHHhhh
Q 008820 158 VWKCIRELI 166 (552)
Q Consensus 158 ~~~~l~~~~ 166 (552)
+.+.+..++
T Consensus 269 i~~~l~~~~ 277 (299)
T d1ckia_ 269 LRQLFRNLF 277 (299)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777765
|
| >d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Serine/threonine protein kinase TAO2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=2.7e-17 Score=154.93 Aligned_cols=110 Identities=17% Similarity=0.169 Sum_probs=75.1
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p 88 (552)
-..|++ |+|+..... ....|||.|||||++ .| .....++.++|||||||+||||++|+ |
T Consensus 152 ~~~Kl~DFG~a~~~~~~------~~~~GT~~Y~APE~~------~~------~~~~~y~~~~DiwSlGvilyel~~g~~P 213 (309)
T d1u5ra_ 152 GLVKLGDFGSASIMAPA------NSFVGTPYWMAPEVI------LA------MDEGQYDGKVDVWSLGITCIELAERKPP 213 (309)
T ss_dssp TEEEECCCTTCBSSSSB------CCCCSCGGGCCHHHH------TT------TTSCCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred CCEEEeecccccccCCC------CccccCccccCHHHH------hc------cCCCCcCchhhhhhHHHHHHHHHHCCCC
Confidence 346777 677655443 457899999999999 22 01245788999999999999999999 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH--HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL--LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
|.......+ + ..+... +.......+.++.+++.+||+.+|.+||++.++.+
T Consensus 214 f~~~~~~~~--------------------~-~~i~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 266 (309)
T d1u5ra_ 214 LFNMNAMSA--------------------L-YHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLK 266 (309)
T ss_dssp TTTSCHHHH--------------------H-HHHHHSCCCCCSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred CCCCCHHHH--------------------H-HHHHhCCCCCCCCCCCCHHHHHHHHHHCcCChhHCcCHHHHHh
Confidence 965432211 0 000000 01111123456999999999999999999988755
|
| >d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Twitchin, kinase domain species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]
Probab=99.63 E-value=1.1e-17 Score=160.55 Aligned_cols=112 Identities=18% Similarity=0.197 Sum_probs=78.2
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+|+.+..... .....||+.|||||++ . ...+++++|||||||+||||+||+ ||.
T Consensus 168 vkL~DFGla~~~~~~~~---~~~~~gt~~y~aPE~~------~---------~~~~~~~~DiwSlGvilyelltG~~Pf~ 229 (352)
T d1koba_ 168 VKIIDFGLATKLNPDEI---VKVTTATAEFAAPEIV------D---------REPVGFYTDMWAIGVLGYVLLSGLSPFA 229 (352)
T ss_dssp EEECCCTTCEECCTTSC---EEEECSSGGGCCHHHH------T---------TCCBCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred EEEeecccceecCCCCc---eeeccCcccccCHHHH------c---------CCCCCCccchHHHHHHHHHHHhCCCCCC
Confidence 4555 77877766543 5678999999999999 3 356789999999999999999999 997
Q ss_pred HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
+.+...+. ..+.......+.........++.+++.+||+.+|.+||++.++.+
T Consensus 230 ~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~ 282 (352)
T d1koba_ 230 GEDDLETL-----------------QNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE 282 (352)
T ss_dssp CSSHHHHH-----------------HHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred CCCHHHHH-----------------HHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 64433110 001000000111122234556999999999999999999887654
|
| >d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Musk tyrosine kinase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=3.9e-17 Score=153.94 Aligned_cols=119 Identities=13% Similarity=0.105 Sum_probs=83.5
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC--
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-- 87 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-- 87 (552)
-.+|++ |+|+.+...+.....+...||+.|||||++. ...++.++|||||||+||||++|.
T Consensus 177 ~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------------~~~~t~ksDVwS~Gvvl~ell~~~~~ 241 (301)
T d1lufa_ 177 MVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIF---------------YNRYTTESDVWAYGVVLWEIFSYGLQ 241 (301)
T ss_dssp GCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHc---------------cCCCChhhhhccchhhHHHHHccCCC
Confidence 457888 7887776665544567789999999999992 256779999999999999999996
Q ss_pred CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
||.......+. ..+.... ...+...+.++.+++.+|++.+|.+||++.++.+.+.++.
T Consensus 242 p~~~~~~~e~~---------------------~~v~~~~~~~~p~~~~~~~~~li~~cl~~~P~~RPt~~ev~~~L~~i~ 300 (301)
T d1lufa_ 242 PYYGMAHEEVI---------------------YYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMC 300 (301)
T ss_dssp TTTTSCHHHHH---------------------HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHH---------------------HHHHcCCCCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhc
Confidence 67654433211 1110000 0111224456999999999999999999999999887754
|
| >d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Abelsone tyrosine kinase (abl) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.62 E-value=3.9e-17 Score=152.47 Aligned_cols=120 Identities=12% Similarity=0.117 Sum_probs=82.8
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p 88 (552)
-.+|++ |+|+.+...... ..+...||+.|||||++. ...+++++|||||||+||||++|. |
T Consensus 152 ~~~Kl~DFG~a~~~~~~~~~-~~~~~~g~~~y~aPE~~~---------------~~~~~~k~DiwS~Gv~l~ell~~~~p 215 (287)
T d1opja_ 152 HLVKVADFGLSRLMTGDTYT-AHAGAKFPIKWTAPESLA---------------YNKFSIKSDVWAFGVLLWEIATYGMS 215 (287)
T ss_dssp GCEEECCCCCTTTCCSSSSE-EETTEEECGGGCCHHHHH---------------HCCCSHHHHHHHHHHHHHHHHTTSCC
T ss_pred CcEEEccccceeecCCCCce-eeccccccccccChHHHc---------------CCCCCchhhhhhHHHHHHHHHhCCCC
Confidence 357888 788776654432 356678999999999992 356779999999999999999987 6
Q ss_pred ch-HHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhhc
Q 008820 89 FT-KELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (552)
Q Consensus 89 f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~~ 167 (552)
|. ......+. ...... .........+.++.+++.+||+.+|.+||++.++.+.+..+..
T Consensus 216 ~~~~~~~~~~~-----------------~~i~~~---~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ei~~~L~~~~~ 275 (287)
T d1opja_ 216 PYPGIDLSQVY-----------------ELLEKD---YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ 275 (287)
T ss_dssp SSTTCCHHHHH-----------------HHHHTT---CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTS
T ss_pred CCCcchHHHHH-----------------HHHhcC---CCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence 53 32222110 000000 0011112234569999999999999999999999888877653
|
| >d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.2e-16 Score=151.32 Aligned_cols=129 Identities=16% Similarity=0.121 Sum_probs=75.3
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+++...... ......|||.|||||++ . ...+++++|||||||+||||+||+ ||.
T Consensus 155 ~kl~dfg~~~~~~~~~---~~~~~~gT~~Y~APE~~------~---------~~~y~~~~DiwSlG~il~ell~g~~pf~ 216 (305)
T d1blxa_ 155 IKLADFGLARIYSFQM---ALTSVVVTLWYRAPEVL------L---------QSSYATPVDLWSVGCIFAEMFRRKPLFR 216 (305)
T ss_dssp EEECSCCSCCCCCGGG---GGCCCCCCCTTCCHHHH------T---------TCCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred eeecchhhhhhhcccc---cCCCcccChhhcCcchh------c---------CCCCChhehhhchHHHHHHHHHCCCCCC
Confidence 4555 5555444333 36788999999999999 3 356789999999999999999999 996
Q ss_pred HHHhhhh----hhccccCCCchhhhhh-hhHHH-HHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDYI----RCVSTKASDDNIACLG-MYMAW-MEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
+.+...+ ........+..|.... ..... ..................+.+++.+||+.+|.+||++.++.+
T Consensus 217 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~ 292 (305)
T d1blxa_ 217 GSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 292 (305)
T ss_dssp CSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CCCHHHHHHHHHHhhCCCchhcccccccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence 5432211 1000111111110000 00000 000000001111223445889999999999999999887544
|
| >d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Focal adhesion kinase 1 (fak) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=3.4e-17 Score=152.10 Aligned_cols=118 Identities=17% Similarity=0.180 Sum_probs=72.4
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
.+|++ |+|+.+..... ...+...||+.|||||++. ...++.++|||||||+||||+| |+ |
T Consensus 146 ~~Kl~DfG~a~~~~~~~~-~~~~~~~gt~~y~apE~l~---------------~~~~~~~~DiwSlGvil~e~lt~g~~P 209 (273)
T d1mp8a_ 146 CVKLGDFGLSRYMEDSTY-YKASKGKLPIKWMAPESIN---------------FRRFTSASDVWMFGVCMWEILMHGVKP 209 (273)
T ss_dssp EEEECC--------------------CCGGGCCHHHHH---------------HCCCSHHHHHHHHHHHHHHHHTTSCCT
T ss_pred cEEEccchhheeccCCcc-eeccceecCcccchhhHhc---------------cCCCCCccccccchHHHHHHHhcCCCC
Confidence 46777 77776654432 2356678999999999992 2567789999999999999998 88 9
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|.......+. ..+... ...+.+...+.++.+++.+||+.+|.+||++.++.+.+..++
T Consensus 210 ~~~~~~~~~~-----------------~~i~~~---~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~L~~i~ 267 (273)
T d1mp8a_ 210 FQGVKNNDVI-----------------GRIENG---ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTIL 267 (273)
T ss_dssp TTTCCGGGHH-----------------HHHHTT---CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHH-----------------HHHHcC---CCCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence 9765433221 000000 000111223456999999999999999999999998887765
|
| >d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Bruton's tyrosine kinase (Btk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=5.5e-17 Score=148.80 Aligned_cols=115 Identities=16% Similarity=0.153 Sum_probs=81.0
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~- 87 (552)
-.+|++ |+|+.+...+.. -.....||+.|||||++. ...++.++|||||||++|||+| |+
T Consensus 137 ~~~kl~DfG~a~~~~~~~~~-~~~~~~~t~~y~aPE~~~---------------~~~~~~ksDiwS~G~~l~el~t~g~~ 200 (258)
T d1k2pa_ 137 GVVKVSDFGLSRYVLDDEYT-SSVGSKFPVRWSPPEVLM---------------YSKFSSKSDIWAFGVLMWEIYSLGKM 200 (258)
T ss_dssp CCEEECCCSSCCBCSSSSCC-CCCCSCCCGGGCCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred CcEEECcchhheeccCCCce-eecccCCCCCcCCcHHhc---------------CCCCCcceeecccchhhHhHHhcCCC
Confidence 356777 777766555432 345678999999999992 2456789999999999999998 89
Q ss_pred CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHH
Q 008820 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIR 163 (552)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~ 163 (552)
||...+...+. ..+... ....+.....++.+++.+|++.+|++||++.++.+.+.
T Consensus 201 Pf~~~~~~~~~---------------------~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~ 256 (258)
T d1k2pa_ 201 PYERFTNSETA---------------------EHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNIL 256 (258)
T ss_dssp TTTTSCHHHHH---------------------HHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHH
T ss_pred CCCCCCHHHHH---------------------HHHHhCCCCCCcccccHHHHHHHHHHccCCHhHCcCHHHHHHHhh
Confidence 99765544221 111000 01111223446999999999999999999998888764
|
| >d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Proto-oncogene serine/threonine-protein kinase Pim-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=4.7e-17 Score=151.01 Aligned_cols=103 Identities=19% Similarity=0.262 Sum_probs=72.8
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+|+..... ..+.+.||+.|||||++. + ....+.++|||||||+||||+||+ ||
T Consensus 149 ~vkl~DFG~a~~~~~~----~~~~~~GT~~y~aPE~~~------~--------~~~~~~~~DiwSlGvilyell~g~~Pf 210 (273)
T d1xwsa_ 149 ELKLIDFGSGALLKDT----VYTDFDGTRVYSPPEWIR------Y--------HRYHGRSAAVWSLGILLYDMVCGDIPF 210 (273)
T ss_dssp EEEECCCTTCEECCSS----CBCCCCSCGGGSCHHHHH------H--------SCBCHHHHHHHHHHHHHHHHHHSSCSC
T ss_pred eEEECccccceecccc----cccccccCCCcCCHHHHc------C--------CCCCCcccccccceeeehhHhhCCCCC
Confidence 45666 667655443 257789999999999993 1 122357899999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
...... . ..+ .......+.++.+++.+||+.+|.+||++.++.+
T Consensus 211 ~~~~~i--~--~~~-----------------------~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~ 254 (273)
T d1xwsa_ 211 EHDEEI--I--RGQ-----------------------VFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQN 254 (273)
T ss_dssp CSHHHH--H--HCC-----------------------CCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCchHH--h--hcc-----------------------cCCCCCCCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence 764322 0 000 0011123345899999999999999999887654
|
| >d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: gamma-subunit of glycogen phosphorylase kinase (Phk) species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.60 E-value=5.3e-17 Score=150.50 Aligned_cols=119 Identities=14% Similarity=0.179 Sum_probs=79.5
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|++ |+++.+..... .+...||+.|+|||++...... ....+++++|||||||+||||+||+ ||
T Consensus 148 ~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~~PE~~~~~~~~---------~~~~~~~~~DiwslGvilyeml~g~~Pf 215 (277)
T d1phka_ 148 NIKLTDFGFSCQLDPGEK---LREVCGTPSYLAPEIIECSMND---------NHPGYGKEVDMWSTGVIMYTLLAGSPPF 215 (277)
T ss_dssp CEEECCCTTCEECCTTCC---BCCCCSCGGGCCHHHHHHHHCT---------TSCCBCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred CeEEccchheeEccCCCc---eeeeeccCCCCCHHHhhccccc---------cCCCCCchheEcccchhhhhhccCCCCC
Confidence 44666 77777665432 5678999999999999543222 1245678999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+.+...+. ..+.......+.......++++.+++.+||+.+|.+||++.++.+
T Consensus 216 ~~~~~~~~~-----------------~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~ 269 (277)
T d1phka_ 216 WHRKQMLML-----------------RMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 269 (277)
T ss_dssp CCSSHHHHH-----------------HHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred CCCCHHHHH-----------------HHHHhCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence 765433110 011110000111122234456999999999999999999877543
|
| >d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Fibroblast growth factor receptor 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.1e-16 Score=150.61 Aligned_cols=118 Identities=16% Similarity=0.233 Sum_probs=84.4
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-p 88 (552)
.+|+. |+++.+.............||+.|||||++. ...+++++|||||||+||||+| |+ |
T Consensus 173 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~---------------~~~y~~k~DiwS~Gvvl~ell~~g~~p 237 (299)
T d1fgka_ 173 VMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALF---------------DRIYTHQSDVWSFGVLLWEIFTLGGSP 237 (299)
T ss_dssp CEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred CeEeccchhhccccccccccccccCCCChhhhhhhHhc---------------CCCCCchhhhHHhHHHHHHhccCCCCC
Confidence 45666 5676666655544567788999999999992 3567899999999999999998 67 8
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|...+...+. ..+.... .........++.+++.+||+.+|.+||++.++.+.+.++.
T Consensus 238 ~~~~~~~~~~---------------------~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~Rps~~eil~~L~~i~ 295 (299)
T d1fgka_ 238 YPGVPVEELF---------------------KLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIV 295 (299)
T ss_dssp STTCCHHHHH---------------------HHHHTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHH---------------------HHHHcCCCCCCCccchHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHh
Confidence 8764443221 1110000 1111223456999999999999999999999999888765
|
| >d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-src tyrosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.5e-16 Score=147.88 Aligned_cols=118 Identities=19% Similarity=0.145 Sum_probs=73.3
Q ss_pred hhhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C
Q 008820 12 SVAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p 88 (552)
-.+|++ |+|+.+..... ...+...||+.|||||++. .+.++.++|||||||+||||+||. |
T Consensus 150 ~~~kl~DfGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~---------------~~~~~~ksDI~S~Giil~el~t~~~p 213 (285)
T d1fmka3 150 LVCKVADFGLARLIEDNEY-TARQGAKFPIKWTAPEAAL---------------YGRFTIKSDVWSFGILLTELTTKGRV 213 (285)
T ss_dssp GCEEECCCCTTC---------------CCGGGSCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CcEEEcccchhhhccCCCc-eeeccccccccccChHHHh---------------CCCCCcHHhhhcchHHHHHHHhCCCC
Confidence 347777 67777655543 2356678999999999992 356778999999999999999976 5
Q ss_pred c-hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 F-TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
| .......+. ..+... ..+.......++.+++.+||+.+|++||++.++...+....
T Consensus 214 ~~~~~~~~~~~---------------------~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~ 272 (285)
T d1fmka3 214 PYPGMVNREVL---------------------DQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF 272 (285)
T ss_dssp SSTTCCHHHHH---------------------HHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTT
T ss_pred CCCCCCHHHHH---------------------HHHHhcCCCCCCcccCHHHHHHHHHHcccCHhHCcCHHHHHHHHhhhh
Confidence 5 332222110 110000 00111223445999999999999999999999988777654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.58 E-value=7.3e-12 Score=121.22 Aligned_cols=248 Identities=8% Similarity=-0.012 Sum_probs=160.9
Q ss_pred EEEEeecCccceEEEEEc--CCEEEEEe----------CCCcEEEEeCCCCeEEEEEeCCCCCe-------EEEEEecCC
Q 008820 244 KFKDLQGHRDCVTGLAVG--GGFLFSSS----------FDKSIHVWSLKDFSHVHTFKGHDHKV-------MAVVYVDED 304 (552)
Q Consensus 244 ~~~~l~~H~~~V~~l~~s--~~~l~s~s----------~dg~I~iwd~~~~~~~~~~~~h~~~v-------~~v~~~~~~ 304 (552)
.+.++.++..+ .++|+ |++|++++ .++.|.+||..+++.+..+..+.... ..+.|++++
T Consensus 59 ~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 136 (373)
T d2madh_ 59 ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN 136 (373)
T ss_pred EEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCC
Confidence 34456666544 68888 88888875 45789999999999998887766544 446777877
Q ss_pred CCEEEEE-cCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCC-EEEEeeCCCcEEEEECCCCceeEEecCCC
Q 008820 305 QPLCISG-DSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAWSLLDGTLSCTMSGHK 382 (552)
Q Consensus 305 ~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~h~ 382 (552)
..+++.. ..++.+.+|+....+...... ......++++++ .+++.+.|+.+.+||...++.......+.
T Consensus 137 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~ 207 (373)
T d2madh_ 137 ADLLFFQFAAGPAVGLVVQGGSSDDQLLS---------SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAM 207 (373)
T ss_pred CcEEEEEEcCCCceEEeeccCCeEEEEec---------cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeec
Confidence 6654433 456778888876543211111 112346788887 56788999999999999888776654322
Q ss_pred ------CCeEEEEEe-CCEEEEEeCCCcEEEEECCCCceeEEEec--CCC--------CceEEEEEEcCCCCE-------
Q 008820 383 ------SAVSTLAVC-NGVLYSGSRDGTIRLWSLSDHSLLTVLEE--DSS--------GAVSSVLSLTAVQHT------- 438 (552)
Q Consensus 383 ------~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~--------~~~~~~~~~s~~~~~------- 438 (552)
.....+.+. ++.++..+.++.+.+|+..++........ ... .......++++++..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 287 (373)
T d2madh_ 208 LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE 287 (373)
T ss_pred cccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCC
Confidence 122334444 44777888999999999887654322211 100 001111344555443
Q ss_pred ---EEEEECCCcEEEEeCCc--ceeeeecccceEEEEEe--cCCE--EEEEeCCCeEEEEecCCCeeeeeeccC
Q 008820 439 ---LVVSHESGSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGKW--LFTGGWDKTVSVQELAGDEFEEDVIPT 503 (552)
Q Consensus 439 ---l~~g~~dg~i~iwd~~~--~~~~~~~h~~~v~~v~~--~~~~--l~sgs~dg~i~iwd~~~~~~~~~~~~~ 503 (552)
+++...++.+.+||... .+..+. +...+..+.| ||+. +++++.|+.|++||+.+++....+...
T Consensus 288 ~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~ 360 (373)
T d2madh_ 288 QSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVEL 360 (373)
T ss_pred CceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCC
Confidence 44556677889999643 344443 4455666665 8884 468899999999999999887776544
|
| >d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Type I TGF-beta receptor R4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=9.9e-17 Score=151.02 Aligned_cols=142 Identities=8% Similarity=0.045 Sum_probs=82.3
Q ss_pred hhhhhcc--cccccccccchh--hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhC
Q 008820 11 KSVAKVG--CVGSRICDKEVG--LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG 86 (552)
Q Consensus 11 ~~~~~~~--~~~~~~~~~~~~--~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg 86 (552)
+-.+|++ |+++.+...... ......+||+.|||||++...... ..+.++.++|||||||+||||+||
T Consensus 144 ~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~---------~~~~~~~k~Di~S~Gvvl~el~tg 214 (303)
T d1vjya_ 144 NGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINM---------KHFESFKRADIYAMGLVFWEIARR 214 (303)
T ss_dssp TSCEEECCCTTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCT---------TCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEecCccccccCCCcceeccccceecccCcCChhhccccccc---------cCCCcCcchhhhhhHHHHHHHhhC
Confidence 3468888 777777554332 235678999999999998221111 124567899999999999999999
Q ss_pred C-CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHH------HHHhhhhcC-ccccHHHHHHhhcccCCCCCcchhhH
Q 008820 87 E-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVT------YLLENKFGS-EFVSLQLMFCQCLNFDPGCRPLLTNV 158 (552)
Q Consensus 87 ~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~l~~~~~~~l~~~p~~R~~~~~~ 158 (552)
. ||......+...... .+..+. ......... ..+...... ....+.+++.+|++.+|.+||++.++
T Consensus 215 ~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei 288 (303)
T d1vjya_ 215 CSIGGIHEDYQLPYYDL--VPSDPS----VEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRI 288 (303)
T ss_dssp BCBTTBCCCCCCTTTTT--SCSSCC----HHHHHHHHTTSCCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHH
T ss_pred CCCCCcccccccchhhc--ccccch----HHHHHHHHhccccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcCHHHH
Confidence 9 774322111110000 000000 011111110 000000000 11238899999999999999999999
Q ss_pred HHHHHhhhc
Q 008820 159 WKCIRELII 167 (552)
Q Consensus 159 ~~~l~~~~~ 167 (552)
.+.+.++..
T Consensus 289 ~~~L~~i~~ 297 (303)
T d1vjya_ 289 KKTLSQLSQ 297 (303)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887753
|
| >d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Activated CDC42 kinase 1, ACK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.5e-16 Score=147.35 Aligned_cols=116 Identities=16% Similarity=0.173 Sum_probs=77.5
Q ss_pred hhhcc--cccccccccch-hhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-
Q 008820 13 VAKVG--CVGSRICDKEV-GLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE- 87 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~- 87 (552)
..|++ |+++.+..... ....+...||+.|||||++. ...++.++|||||||+||||+| |+
T Consensus 149 ~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~---------------~~~~~~~~Di~S~Gvil~emlt~G~~ 213 (273)
T d1u46a_ 149 LVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLK---------------TRTFSHASDTWMFGVTLWEMFTYGQE 213 (273)
T ss_dssp EEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHH---------------HCEEEHHHHHHHHHHHHHHHHTTSCC
T ss_pred ceeeccchhhhhcccCCCcceecCccccCcccCCHHHHh---------------CCCCCcchhhhhhHHHHHHHHhCCCC
Confidence 46777 77776655433 33456677899999999993 2456789999999999999998 89
Q ss_pred CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHH--hhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHh
Q 008820 88 QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLL--ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (552)
Q Consensus 88 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~ 164 (552)
||.+.+...+. ..+.... .+.....+.++.+++.+|+..+|.+||++.++.+.+.+
T Consensus 214 Pf~~~~~~~~~---------------------~~i~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~ei~~~L~~ 271 (273)
T d1u46a_ 214 PWIGLNGSQIL---------------------HKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLE 271 (273)
T ss_dssp TTTTCCHHHHH---------------------HHHHTSCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred CCCCcCHHHHH---------------------HHHHhCCCCCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHh
Confidence 99765444221 0000000 01112234469999999999999999999999887765
|
| >d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Carboxyl-terminal src kinase (csk) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.8e-16 Score=145.52 Aligned_cols=112 Identities=16% Similarity=0.219 Sum_probs=71.4
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhh-CC-Cc
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLI-GE-QF 89 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~llt-g~-pf 89 (552)
+|++ |+++..... .....||+.|||||++. +..++++||||||||+||||+| |+ ||
T Consensus 142 ~kl~dfg~s~~~~~~-----~~~~~~~~~y~aPE~l~---------------~~~~t~~sDIwSfG~il~el~t~~~~p~ 201 (262)
T d1byga_ 142 AKVSDFGLTKEASST-----QDTGKLPVKWTAPEALR---------------EKKFSTKSDVWSFGILLWEIYSFGRVPY 201 (262)
T ss_dssp EEECCCCC-----------------CCTTTSCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTSCCSC
T ss_pred EeecccccceecCCC-----CccccccccCCChHHHh---------------CCCCChHHHHHhHHHHHHHHHHCCCCCC
Confidence 3444 566655444 44568999999999992 3567899999999999999998 67 88
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHH-HHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTY-LLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
.......+. ..+.. ...+......+++.+++.+|++.+|.+||++.++.+.+.++.
T Consensus 202 ~~~~~~~~~---------------------~~i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~Rps~~~l~~~L~~i~ 258 (262)
T d1byga_ 202 PRIPLKDVV---------------------PRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIK 258 (262)
T ss_dssp TTSCGGGHH---------------------HHHTTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHH---------------------HHHHcCCCCCCCccCCHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHH
Confidence 664433221 10000 000111223456999999999999999999999999887653
|
| >d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Hepatocyte growth factor receptor, c-MET species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=2e-16 Score=149.33 Aligned_cols=120 Identities=16% Similarity=0.122 Sum_probs=81.9
Q ss_pred hhhhcc--cccccccccchh--hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC
Q 008820 12 SVAKVG--CVGSRICDKEVG--LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE 87 (552)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~--~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~ 87 (552)
-.+|++ |+++.+...... ...+...||+.|||||.+. ...++.++|||||||+||||+||.
T Consensus 167 ~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---------------~~~~~~ksDI~SfGivl~El~t~~ 231 (311)
T d1r0pa_ 167 FTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ---------------TQKFTTKSDVWSFGVLLWELMTRG 231 (311)
T ss_dssp CCEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTS
T ss_pred CCEEEecccchhhccccccccceecccccccccccChHHHh---------------cCCCCChhHhhhhHHHHHHHHHCC
Confidence 357777 777776655332 3455678999999999982 356789999999999999999988
Q ss_pred -CchHHHhh-hhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhh
Q 008820 88 -QFTKELID-YIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIREL 165 (552)
Q Consensus 88 -pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~ 165 (552)
||...... .+. ...... ...........++.+++.+|++.+|++||++.++.+.+.++
T Consensus 232 ~p~~~~~~~~~~~-----------------~~i~~g---~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~L~~i 291 (311)
T d1r0pa_ 232 APPYPDVNTFDIT-----------------VYLLQG---RRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAI 291 (311)
T ss_dssp CCSCC------CH-----------------HHHHTT---CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHH-----------------HHHHcC---CCCCCcccCcHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence 87543211 110 000000 00001112344699999999999999999999999998887
Q ss_pred h
Q 008820 166 I 166 (552)
Q Consensus 166 ~ 166 (552)
.
T Consensus 292 ~ 292 (311)
T d1r0pa_ 292 F 292 (311)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 7, CDK7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=6.4e-16 Score=145.56 Aligned_cols=131 Identities=18% Similarity=0.186 Sum_probs=74.9
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|+. |+|+.+...... .....||+.|||||++ .+ ...++.++|||||||+||||+||+ ||.
T Consensus 139 ~KL~DFG~a~~~~~~~~~--~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DiwSlGvil~el~~g~~pf~ 202 (299)
T d1ua2a_ 139 LKLADFGLAKSFGSPNRA--YTHQVVTRWYRAPELL------FG--------ARMYGVGVDMWAVGCILAELLLRVPFLP 202 (299)
T ss_dssp EEECCCGGGSTTTSCCCC--CCCSCCCCTTCCHHHH------TT--------CSCCCHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred cccccCccccccCCCccc--ccceecChhhccHHHH------cc--------CCCCChhhhhhhcchHHHHHHhCcCCCC
Confidence 3555 667666554432 5567899999999998 22 234678999999999999999999 995
Q ss_pred HHHhhh----hhhccccCCCchhhhhhh-hHHH-HHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 KELIDY----IRCVSTKASDDNIACLGM-YMAW-MEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 ~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
+.+... +....+......|..... .... ....+..+ .........++.+++.+||+.+|.+||++.++.+
T Consensus 203 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~ 279 (299)
T d1ua2a_ 203 GDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK 279 (299)
T ss_dssp CSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCChhhccchhccchhhhhccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhC
Confidence 533221 110000000001100000 0000 00000000 0011122345889999999999999999888654
|
| >d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Tie2 kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=5.4e-16 Score=146.54 Aligned_cols=116 Identities=16% Similarity=0.056 Sum_probs=78.7
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC--C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE--Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~--p 88 (552)
.+|++ |+|+....... .....||+.|||||.+. ...++.+||||||||+||||++|. |
T Consensus 165 ~~kl~DfG~a~~~~~~~~---~~~~~gt~~y~aPE~l~---------------~~~~~~~sDvwSfGvil~ell~~~~~p 226 (309)
T d1fvra_ 165 VAKIADFGLSRGQEVYVK---KTMGRLPVRWMAIESLN---------------YSVYTTNSDVWSYGVLLWEIVSLGGTP 226 (309)
T ss_dssp CEEECCTTCEESSCEECC---C----CCTTTCCHHHHH---------------HCEECHHHHHHHHHHHHHHHHTTSCCT
T ss_pred ceEEcccccccccccccc---ccceecCCcccchHHhc---------------cCCCCccceeehhHHHHHHHHhcCCCC
Confidence 45666 66765554433 34667999999999992 356778999999999999999976 6
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhhc
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELII 167 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~~ 167 (552)
|...+...+. ..+..- ....+.....++.+++.+||+.+|++||++.++.+.+.++..
T Consensus 227 ~~~~~~~~~~---------------------~~i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~~L~~i~~ 285 (309)
T d1fvra_ 227 YCGMTCAELY---------------------EKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLE 285 (309)
T ss_dssp TTTCCHHHHH---------------------HHGGGTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHH---------------------HHHHhcCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence 7654433221 100000 001111234469999999999999999999999999888764
|
| >d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Casein kinase-1, CK1 species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.55 E-value=8e-16 Score=144.14 Aligned_cols=124 Identities=10% Similarity=-0.015 Sum_probs=80.9
Q ss_pred hhcc--cccccccccchh-----hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhC
Q 008820 14 AKVG--CVGSRICDKEVG-----LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIG 86 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~-----~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg 86 (552)
.|+. |+|+.+.+.... .....+.|||.|||||++ .| ..+++++|||||||++|||+||
T Consensus 145 vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~------~~---------~~~~~~~DiwSlG~~l~elltg 209 (293)
T d1csna_ 145 IYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTH------LG---------REQSRRDDLEALGHVFMYFLRG 209 (293)
T ss_dssp EEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHH------TT---------CCCCHHHHHHHHHHHHHHHHHS
T ss_pred eEEcccceeEEcccCccccceeecccCceEEchhhcCHHHh------cC---------CCCChHHHHHHhhHHHHHHHhC
Confidence 4555 677665443211 125578999999999999 33 5578999999999999999999
Q ss_pred C-CchHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHH-HhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHh
Q 008820 87 E-QFTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYL-LENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRE 164 (552)
Q Consensus 87 ~-pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~ 164 (552)
+ ||.+....... .....+....... +.......+.++.+++..|+..+|++||....+.+.+.+
T Consensus 210 ~~Pf~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~p~~l~~ii~~~~~~~~~~rP~y~~l~~~l~~ 275 (293)
T d1csna_ 210 SLPWQGLKAATNK--------------QKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSK 275 (293)
T ss_dssp SCTTSSCCSCCHH--------------HHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHH
T ss_pred CCcCCCccchhHH--------------HHHHHHHhccCCCChHHhcCCCCHHHHHHHHHHhcCCcccCcCHHHHHHHHHH
Confidence 9 99753322000 0011111111111 111122344569999999999999999988777777766
Q ss_pred hh
Q 008820 165 LI 166 (552)
Q Consensus 165 ~~ 166 (552)
++
T Consensus 276 ~~ 277 (293)
T d1csna_ 276 VL 277 (293)
T ss_dssp HH
T ss_pred HH
Confidence 55
|
| >d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Titin, kinase domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.9e-16 Score=150.14 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=74.3
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhh
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDY 96 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~ 96 (552)
|+++.+..... .....|||.|||||++ . ...+++++|||||||+||+|++|+ ||...+...
T Consensus 149 G~~~~~~~~~~---~~~~~~t~~y~ape~~------~---------~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~ 210 (321)
T d1tkia_ 149 GQARQLKPGDN---FRLLFTAPEYYAPEVH------Q---------HDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQ 210 (321)
T ss_dssp TTCEECCTTCE---EEEEESCGGGSCHHHH------T---------TCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred chhhccccCCc---ccccccccccccchhc------c---------CCCCCchhhcccHHHHHHHHHhCCCCCCCCCHHH
Confidence 56665544432 4567899999999998 2 356778999999999999999999 997654332
Q ss_pred hhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 97 IRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
+. ..+.......+.........++.+++.+||..+|.+||++.++.+
T Consensus 211 ~~-----------------~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~ 257 (321)
T d1tkia_ 211 II-----------------ENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp HH-----------------HHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HH-----------------HHHHhCCCCCChhhccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 10 011110000111122223456899999999999999999988765
|
| >d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Insulin-like growth factor 1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=6.9e-16 Score=145.61 Aligned_cols=118 Identities=19% Similarity=0.181 Sum_probs=84.9
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC--C
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE--Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~--p 88 (552)
.+|++ |+|+.+.........+...|||.|||||.+. ...++.++|||||||+||||+||. |
T Consensus 171 ~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~---------------~~~~~~~~Dv~S~G~il~El~t~~~~p 235 (308)
T d1p4oa_ 171 TVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLK---------------DGVFTTYSDVWSFGVVLWEIATLAEQP 235 (308)
T ss_dssp CEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHHTSCCT
T ss_pred eEEEeecccceeccCCcceeeccceecccccCCHHHHc---------------cCCCCcccccccHHHHHHHHHhCCCCC
Confidence 57887 7888777766655567778999999999992 255678999999999999999996 7
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHH-hhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLL-ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|...+..++ ...+.... ..........+.+++.+|++.+|++||++.++.+.+.+..
T Consensus 236 ~~~~~~~~~---------------------~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~ 293 (308)
T d1p4oa_ 236 YQGLSNEQV---------------------LRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEM 293 (308)
T ss_dssp TTTSCHHHH---------------------HHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGS
T ss_pred CCCCCHHHH---------------------HHHHHhCCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhc
Confidence 755433311 11110000 0011123346999999999999999999999998877654
|
| >d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-KIT receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=6.2e-16 Score=146.26 Aligned_cols=120 Identities=15% Similarity=0.228 Sum_probs=80.7
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C-
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q- 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p- 88 (552)
.+|+. |+++.+.........+...|||.|||||++. ...+++++|||||||+||||+|+. |
T Consensus 183 ~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---------------~~~~~~~~DIwS~G~~l~ellt~g~p~ 247 (311)
T d1t46a_ 183 ITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIF---------------NCVYTFESDVWSYGIFLWELFSLGSSP 247 (311)
T ss_dssp EEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHH---------------HCCCCHHHHHHHHHHHHHHHHTTTCCS
T ss_pred cccccccchheeccCCCcceEeeecccChHHcCHHHhc---------------CCCCCCcccccchHHHHHHHHhCCCCC
Confidence 34555 6677766555444567789999999999992 255679999999999999999955 4
Q ss_pred chHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHHHHHhhh
Q 008820 89 FTKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWKCIRELI 166 (552)
Q Consensus 89 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~~l~~~~ 166 (552)
|........ .......- .........+.++.+++.+||+.+|.+||++.++.+.+.+.+
T Consensus 248 ~~~~~~~~~-----------------~~~~i~~~--~~~~~~~~~~~~l~~Li~~cl~~dP~~RPs~~~il~~L~~~i 306 (311)
T d1t46a_ 248 YPGMPVDSK-----------------FYKMIKEG--FRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQI 306 (311)
T ss_dssp STTCCSSHH-----------------HHHHHHHT--CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHH-----------------HHHHHhcC--CCCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhh
Confidence 544222100 00000000 000111223456999999999999999999999999887654
|
| >d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Ribosomal protein S6 kinase alpha 5, Msk1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.2e-15 Score=144.63 Aligned_cols=112 Identities=14% Similarity=0.138 Sum_probs=75.7
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
.+|+. |+|+.+...... ......||+.|||||.+ .+ ....+++++|||||||+||||+||+ ||
T Consensus 167 ~vkL~DFG~a~~~~~~~~~-~~~~~~g~~~~~~pe~~------~~-------~~~~~~~ksDIWSlG~iLyelltG~~PF 232 (322)
T d1vzoa_ 167 HVVLTDFGLSKEFVADETE-RAYDFCGTIEYMAPDIV------RG-------GDSGHDKAVDWWSLGVLMYELLTGASPF 232 (322)
T ss_dssp CEEESCSSEEEECCGGGGG-GGCGGGSCCTTCCHHHH------TT-------CC---CTHHHHHHHHHHHHHHHHSSCTT
T ss_pred CEEEeeccchhhhcccccc-cccccccccccchhHHh------hc-------CCcCCCchhhhHHHHHHHHHHHhCCCCC
Confidence 45666 667777665543 35668999999999999 33 2345678999999999999999999 99
Q ss_pred hHHHhhhhhhccccCCCchhhhhhhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCCCCcch
Q 008820 90 TKELIDYIRCVSTKASDDNIACLGMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLL 155 (552)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~ 155 (552)
.......+ ...+.................++.+++.+||+.+|.+||+.
T Consensus 233 ~~~~~~~~-----------------~~~i~~~~~~~~~~~~~~~s~~~~~li~~~l~~dP~~R~s~ 281 (322)
T d1vzoa_ 233 TVDGEKNS-----------------QAEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGC 281 (322)
T ss_dssp SCTTSCCC-----------------HHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTS
T ss_pred CCCCHHHH-----------------HHHHHHhcccCCCCCcccCCHHHHHHHHHHcccCHHHcCCC
Confidence 77543311 11122222111122223355679999999999999999974
|
| >d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cell division protein kinase 9, CDK9 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=4.5e-15 Score=141.10 Aligned_cols=129 Identities=14% Similarity=0.127 Sum_probs=74.4
Q ss_pred hhhcc--cccccccccchh--hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-
Q 008820 13 VAKVG--CVGSRICDKEVG--LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE- 87 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~--~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~- 87 (552)
..|++ |+++.+...... ......+||+.|||||++ .+ ...+++++|||||||++|||++|+
T Consensus 155 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~------~~--------~~~~~~k~DiwSlGvil~el~~g~~ 220 (318)
T d3blha1 155 VLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELL------LG--------ERDYGPPIDLWGAGCIMAEMWTRSP 220 (318)
T ss_dssp CEEECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHH------TT--------CSSCCTHHHHHHHHHHHHHHHHSSC
T ss_pred cEEeeecceeeecccccccccccccceecCHHHhhHHHH------cC--------CCCCCcHHHcccCCceeeeHhhCCC
Confidence 45666 777666543322 223456899999999998 32 234678999999999999999999
Q ss_pred CchHHHhhh----hhhccccCCCchhhhh-------------hhhHHHHHHHHHHHhhhhcCccccHHHHHHhhcccCCC
Q 008820 88 QFTKELIDY----IRCVSTKASDDNIACL-------------GMYMAWMEKVTYLLENKFGSEFVSLQLMFCQCLNFDPG 150 (552)
Q Consensus 88 pf~~~~~~~----~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~p~ 150 (552)
||.+.+... +........+..|... .......+..... ...+.+.+++.+||+.+|+
T Consensus 221 pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~dLl~~mL~~dP~ 294 (318)
T d3blha1 221 IMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAY------VRDPYALDLIDKLLVLDPA 294 (318)
T ss_dssp SCCCSSHHHHHHHHHHHHCCCCTTTSTTCCCC-------CCSSCCBCHHHHHHHH------HCCHHHHHHHHHHSCSSTT
T ss_pred CCCCCCHHHHHHHHHHhcCCCChhhccccchhhhhhhhcccccccccchhhhccc------cCCHHHHHHHHHHCcCChh
Confidence 995432211 1100111000000000 0000011111000 1123477899999999999
Q ss_pred CCcchhhHHHH
Q 008820 151 CRPLLTNVWKC 161 (552)
Q Consensus 151 ~R~~~~~~~~~ 161 (552)
+||++.++.+.
T Consensus 295 ~R~sa~elL~H 305 (318)
T d3blha1 295 QRIDSDDALNH 305 (318)
T ss_dssp TSCCHHHHHHS
T ss_pred HCcCHHHHHcC
Confidence 99999987653
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=8.7e-12 Score=118.36 Aligned_cols=252 Identities=13% Similarity=0.137 Sum_probs=153.9
Q ss_pred EEEEEeecCccceEEEEEc--CCEEEEE-eCCCcEEEEeCCCCeEEEEE---eCCCCCeEEEEEecCCCCEEEEEcCCCc
Q 008820 243 VKFKDLQGHRDCVTGLAVG--GGFLFSS-SFDKSIHVWSLKDFSHVHTF---KGHDHKVMAVVYVDEDQPLCISGDSGGG 316 (552)
Q Consensus 243 ~~~~~l~~H~~~V~~l~~s--~~~l~s~-s~dg~I~iwd~~~~~~~~~~---~~h~~~v~~v~~~~~~~~~l~s~~~dg~ 316 (552)
..+.....|.+.|.+++|+ |++|+++ ..|+.|++|++........+ ..+...+..++|+|++..+++++..++.
T Consensus 27 l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~ 106 (333)
T d1ri6a_ 27 LTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGN 106 (333)
T ss_dssp EEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTE
T ss_pred eEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCc
Confidence 3333344688899999999 8888555 45899999998765432222 2344567789999998877666667889
Q ss_pred EEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEee-CCCcEEEEECCCCceeEE------ecCCCCCeEEEE
Q 008820 317 IFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS-GDRTIKAWSLLDGTLSCT------MSGHKSAVSTLA 389 (552)
Q Consensus 317 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs-~dg~i~iwd~~~~~~~~~------~~~h~~~v~~l~ 389 (552)
+.+|+................... ....++++++++++++ .+..|.+|+......... ..........++
T Consensus 107 v~~~~~~~~~~~~~~~~~~~~~~~---~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~ 183 (333)
T d1ri6a_ 107 VSVTRLEDGLPVGVVDVVEGLDGC---HSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMV 183 (333)
T ss_dssp EEEEEEETTEEEEEEEEECCCTTB---CCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEE
T ss_pred eeeeccccccceecccccCCCccc---eEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEE
Confidence 999988754433222221111111 1236889999777666 456799999876533221 123445668899
Q ss_pred Ee-CC-EE-EEEeCCCcEEEEECCCCce----eEEEecC----CCCceEEEEEEcCCCCEEEEE-ECCCcEEEEeCCc--
Q 008820 390 VC-NG-VL-YSGSRDGTIRLWSLSDHSL----LTVLEED----SSGAVSSVLSLTAVQHTLVVS-HESGSIKVWRNDK-- 455 (552)
Q Consensus 390 ~~-~~-~l-~s~~~dg~i~iwd~~~~~~----~~~~~~~----~~~~~~~~~~~s~~~~~l~~g-~~dg~i~iwd~~~-- 455 (552)
|+ ++ .+ .+....+...+|+...... ....... ..........+++++++++.. ..++.+.+|+...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~ 263 (333)
T d1ri6a_ 184 FHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG 263 (333)
T ss_dssp ECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred EeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCC
Confidence 98 33 44 4455667888888754321 1222111 111222336789999877665 4567899997432
Q ss_pred ceeeeec---ccceEE--EEEecCCEEEEEe-CCCeEEEEec--CCCeee
Q 008820 456 FMKSMQT---HKGSVF--AVFLEGKWLFTGG-WDKTVSVQEL--AGDEFE 497 (552)
Q Consensus 456 ~~~~~~~---h~~~v~--~v~~~~~~l~sgs-~dg~i~iwd~--~~~~~~ 497 (552)
....... +...+. ++++||++|++++ .++.|++|++ .++++.
T Consensus 264 ~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~ 313 (333)
T d1ri6a_ 264 SVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH 313 (333)
T ss_dssp CCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred CEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence 2222222 223333 4455999887765 4689999955 566543
|
| >d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=6.9e-15 Score=138.16 Aligned_cols=132 Identities=11% Similarity=0.093 Sum_probs=75.4
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|++ |+|+........ .....||+.|||||++ .+ ....++++|||||||+||+|++|+ ||
T Consensus 140 ~~kl~DFG~a~~~~~~~~~--~~~~~gt~~y~apE~~------~~--------~~~~~~~~DiwSlGvily~m~~G~~Pf 203 (298)
T d1gz8a_ 140 AIKLADFGLARAFGVPVRT--YTHEVVTLWYRAPEIL------LG--------CKYYSTAVDIWSLGCIFAEMVTRRALF 203 (298)
T ss_dssp CEEECSTTHHHHHCCCSBC--TTCCBCCCTTCCHHHH------TT--------CSSCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred cceeccCCcceeccCCccc--ceeecccceeeehhhh------cc--------ccCCCccccccccchhhhHHhhCCCCC
Confidence 34566 566666544332 6677999999999998 22 234578999999999999999999 99
Q ss_pred hHHHhhh-hhh---ccccCCCchhhhhhhhHHHHHHHH----HHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELIDY-IRC---VSTKASDDNIACLGMYMAWMEKVT----YLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+.+... +.. .........|.............+ ............++.+++.+||..+|.+||++.++.+
T Consensus 204 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~ 282 (298)
T d1gz8a_ 204 PGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA 282 (298)
T ss_dssp CCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCchhhccccccccccccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 6533221 100 000000001100000000000000 0000011122345889999999999999999988755
|
| >d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK2 species: (Plasmodium falciparum) [TaxId: 5833]
Probab=99.43 E-value=1.8e-14 Score=134.59 Aligned_cols=132 Identities=15% Similarity=0.137 Sum_probs=71.2
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+|..+..... -.....||+.|+|||++ .+ ...+++++|||||||+||||++|+ ||
T Consensus 138 ~~kl~DfG~a~~~~~~~~--~~~~~~~~~~y~~pE~~------~~--------~~~~~~~~DiwslGv~l~el~~G~~pf 201 (286)
T d1ob3a_ 138 ELKIADFGLARAFGIPVR--KYTHEIVTLWYRAPDVL------MG--------SKKYSTTIDIWSVGCIFAEMVNGTPLF 201 (286)
T ss_dssp CEEECCTTHHHHHCC-----------CCCTTCCHHHH------TT--------CCSCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred CEEecccccceecccCcc--ccceecccchhhhHHHH------hC--------CCCCCcceeehhcCcHHHHHHHCCCCC
Confidence 34555 55555544332 25566899999999999 22 245678999999999999999999 99
Q ss_pred hHHHhh----hhhhccccCCCchhhhhhhhHHHHHHH----HHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 90 TKELID----YIRCVSTKASDDNIACLGMYMAWMEKV----TYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 90 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
.+.+.. ++...........|............. .............++.+++.+||+.||.+||++.++.+
T Consensus 202 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~ 280 (286)
T d1ob3a_ 202 PGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280 (286)
T ss_dssp CCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCCHHHHHHHHHHhhCCCChhhccchhhhhhcccccccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 543222 111111111111111000000000000 00001111223445889999999999999999887654
|
| >d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=3.3e-14 Score=136.58 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=74.4
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|.+ |+|+..... .+...||+.|||||++. | ....++++|||||||+||||++|+ ||.
T Consensus 160 ~kl~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~~------~--------~~~~~~~~DiwSlGvil~ell~g~~pf~ 220 (346)
T d1cm8a_ 160 LKILDFGLARQADSE-----MTGYVVTRWYRAPEVIL------N--------WMRYTQTVDIWSVGCIMAEMITGKTLFK 220 (346)
T ss_dssp EEECCCTTCEECCSS-----CCSSCSCGGGCCTHHHH------T--------TTCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred cccccccceeccCCc-----cccccccccccCHHHHc------C--------CCCCCccchhhcchHHHHHHHHCcCCCC
Confidence 3455 556655444 56789999999999982 2 234578999999999999999999 995
Q ss_pred HHHhhhh----hhccccCCCchhhhhhhhHHHHHHHH-HHH-------hhhhcCccccHHHHHHhhcccCCCCCcchhhH
Q 008820 91 KELIDYI----RCVSTKASDDNIACLGMYMAWMEKVT-YLL-------ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNV 158 (552)
Q Consensus 91 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~ 158 (552)
+.+.... ...... .+..+... .......... ..+ ........+++.+++.+||..+|.+||++.++
T Consensus 221 ~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~ei 298 (346)
T d1cm8a_ 221 GSDHLDQLKEIMKVTGT-PPAEFVQR-LQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEA 298 (346)
T ss_dssp CSSHHHHHHHHHHHHCC-CCHHHHHT-CSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred CCChHHHHHHHHhccCC-CcHHHHhh-hcchhhhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHHHH
Confidence 5332211 100010 11000000 0000000000 000 01111234458899999999999999999887
Q ss_pred HH
Q 008820 159 WK 160 (552)
Q Consensus 159 ~~ 160 (552)
.+
T Consensus 299 L~ 300 (346)
T d1cm8a_ 299 LA 300 (346)
T ss_dssp HH
T ss_pred hc
Confidence 65
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.41 E-value=1.2e-11 Score=118.58 Aligned_cols=252 Identities=11% Similarity=0.047 Sum_probs=154.4
Q ss_pred CCeEEEEEeecCccceEEEEEc--CCEEEEE----------eCCCcEEEEeCCCCeEEEEEeCCCC-------CeEEEEE
Q 008820 240 KGNVKFKDLQGHRDCVTGLAVG--GGFLFSS----------SFDKSIHVWSLKDFSHVHTFKGHDH-------KVMAVVY 300 (552)
Q Consensus 240 ~~~~~~~~l~~H~~~V~~l~~s--~~~l~s~----------s~dg~I~iwd~~~~~~~~~~~~h~~-------~v~~v~~ 300 (552)
+....+.++..+..+ .++|+ |++|+.+ +.|+.|++||..+++.+..+..+.. ....++|
T Consensus 36 ~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (355)
T d2bbkh_ 36 EAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL 113 (355)
T ss_dssp TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred CCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEE
Confidence 334445666666544 68898 7777764 3478999999999999888765432 2356789
Q ss_pred ecCCCCEEEEE-cCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEe-
Q 008820 301 VDEDQPLCISG-DSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM- 378 (552)
Q Consensus 301 ~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~- 378 (552)
++++..+++.. +.+..+.+|+..+......+... .. ...+.......++.+.||....+..........+
T Consensus 114 s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~ 185 (355)
T d2bbkh_ 114 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP---DC-----YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH 185 (355)
T ss_dssp CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC---SE-----EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE
T ss_pred ecCCCeeEEecCCCCceeeeeecCCCcEeeEEecC---Cc-----ceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEe
Confidence 99887655433 45678999999876443332211 10 1111222233444455555555544333222221
Q ss_pred -----cCCCCCeEEEEEe--CCEEEEEeCCCcEEEEECCCCceeEE--EecCC---------CCceEEEEEEcCCCCEEE
Q 008820 379 -----SGHKSAVSTLAVC--NGVLYSGSRDGTIRLWSLSDHSLLTV--LEEDS---------SGAVSSVLSLTAVQHTLV 440 (552)
Q Consensus 379 -----~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~---------~~~~~~~~~~s~~~~~l~ 440 (552)
..+...+....+. +..++.++.++.+++|++..++.... ...+. .... ..+++++++..++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~d~~~~~ 264 (355)
T d2bbkh_ 186 TEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW-QQVAYHRALDRIY 264 (355)
T ss_dssp CCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSS-SCEEEETTTTEEE
T ss_pred cccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccce-EEEEEeCCCCeEE
Confidence 1234445556666 45888999999999999988764221 11110 0111 1258889999888
Q ss_pred EEECC----------CcEEEEeCCc--ceeeeecccceEEEEEe--cCC--EEEEEeCCCeEEEEecCCCeeeeeeccC
Q 008820 441 VSHES----------GSIKVWRNDK--FMKSMQTHKGSVFAVFL--EGK--WLFTGGWDKTVSVQELAGDEFEEDVIPT 503 (552)
Q Consensus 441 ~g~~d----------g~i~iwd~~~--~~~~~~~h~~~v~~v~~--~~~--~l~sgs~dg~i~iwd~~~~~~~~~~~~~ 503 (552)
....+ ..|.+||..+ .+..+.. ...+.++.+ ||+ ++++++.|+.|++||+++++....+...
T Consensus 265 ~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~ 342 (355)
T d2bbkh_ 265 LLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 342 (355)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred EEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCc
Confidence 76544 3689999653 4444443 334555554 887 4567778999999999999887766543
|
| >d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Glycogen synthase kinase-3 beta (Gsk3b) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=3.7e-14 Score=136.32 Aligned_cols=122 Identities=17% Similarity=0.187 Sum_probs=76.2
Q ss_pred hhhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cc
Q 008820 13 VAKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QF 89 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf 89 (552)
..|+. |+++.+...+. .....||+.|+|||.+ .+ ...++.++|||||||++|||++|+ ||
T Consensus 161 ~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~------~~--------~~~~~~~~DIwSlG~il~el~~g~~pf 223 (350)
T d1q5ka_ 161 VLKLCDFGSAKQLVRGEP---NVSYICSRYYRAPELI------FG--------ATDYTSSIDVWSAGCVLAELLLGQPIF 223 (350)
T ss_dssp CEEECCCTTCEECCTTSC---CCSCCSCTTSCCHHHH------TT--------CSSCCTHHHHHHHHHHHHHHHHTSCSS
T ss_pred ceeEecccchhhccCCcc---cccccccccccChHHh------hc--------ccCCCcceeecccceEEEehhhCCCCC
Confidence 45666 67777665543 5667999999999998 22 245679999999999999999999 99
Q ss_pred hHHHhhh-hh---hccccCCCchhhhhhhhHHHHHHHHHHH-------------hhhhcCccccHHHHHHhhcccCCCCC
Q 008820 90 TKELIDY-IR---CVSTKASDDNIACLGMYMAWMEKVTYLL-------------ENKFGSEFVSLQLMFCQCLNFDPGCR 152 (552)
Q Consensus 90 ~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~l~~~p~~R 152 (552)
...+... +. ...+.... ..+........ ........+++.+++.+||..||.+|
T Consensus 224 ~~~~~~~~l~~i~~~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R 294 (350)
T d1q5ka_ 224 PGDSGVDQLVEIIKVLGTPTR---------EQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTAR 294 (350)
T ss_dssp CCSSHHHHHHHHHHHHCCCCH---------HHHHHHCC---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGS
T ss_pred CCCCHHHHHHHHHHHhCCChH---------HhhhhhccchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHC
Confidence 5433221 11 00011000 00101000000 00011234458899999999999999
Q ss_pred cchhhHHH
Q 008820 153 PLLTNVWK 160 (552)
Q Consensus 153 ~~~~~~~~ 160 (552)
|++.++.+
T Consensus 295 ~ta~e~L~ 302 (350)
T d1q5ka_ 295 LTPLEACA 302 (350)
T ss_dssp CCHHHHHT
T ss_pred cCHHHHhc
Confidence 99888654
|
| >d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase Erk2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.4e-13 Score=131.98 Aligned_cols=134 Identities=15% Similarity=0.160 Sum_probs=76.1
Q ss_pred hhhcc--cccccccccchh-hhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-C
Q 008820 13 VAKVG--CVGSRICDKEVG-LFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-Q 88 (552)
Q Consensus 13 ~~~~~--~~~~~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-p 88 (552)
..|+. |+|+.+...... ......+||+.|||||++. . ...++.++|||||||++|||++|+ |
T Consensus 147 ~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~l~------~--------~~~~~~~~DiwSlG~il~eml~g~~p 212 (345)
T d1pmea_ 147 DLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIML------N--------SKGYTKSIDIWSVGCILAEMLSNRPI 212 (345)
T ss_dssp CEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGGTT------T--------BCSCSTHHHHHHHHHHHHHHHHSSCS
T ss_pred CEEEcccCceeeccCCCccceeeccccccceechHHHhh------c--------CCCCCchhhhhccCceehHHhhCCCC
Confidence 45565 666655444331 2356788999999999981 1 234568899999999999999999 9
Q ss_pred chHHHhhhhhh--ccccCCCchhhhhhh-hHHHHHHHHHHH-------hhhhcCccccHHHHHHhhcccCCCCCcchhhH
Q 008820 89 FTKELIDYIRC--VSTKASDDNIACLGM-YMAWMEKVTYLL-------ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNV 158 (552)
Q Consensus 89 f~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~ 158 (552)
|.......... +.....+........ ...........+ .........++.+++.+||+.||.+||++.++
T Consensus 213 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~ 292 (345)
T d1pmea_ 213 FPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQA 292 (345)
T ss_dssp CCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred CCCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 95433221100 000000000000000 000000000000 01111233458899999999999999998887
Q ss_pred HH
Q 008820 159 WK 160 (552)
Q Consensus 159 ~~ 160 (552)
.+
T Consensus 293 L~ 294 (345)
T d1pmea_ 293 LA 294 (345)
T ss_dssp HT
T ss_pred hc
Confidence 55
|
| >d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: c-jun N-terminal kinase (jnk3s) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=3.8e-13 Score=129.36 Aligned_cols=47 Identities=21% Similarity=0.559 Sum_probs=35.3
Q ss_pred hhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHH
Q 008820 31 FLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKE 92 (552)
Q Consensus 31 ~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~ 92 (552)
..+...||+.|||||++ .| ..+++++|||||||++|||++|+ ||.+.
T Consensus 174 ~~~~~~~t~~y~aPE~l------~~---------~~~~~~~DiwSlG~~l~ell~g~~pF~~~ 221 (355)
T d2b1pa1 174 MMTPYVVTRYYRAPEVI------LG---------MGYKENVDIWSVGCIMGEMVRHKILFPGR 221 (355)
T ss_dssp -------CCTTCCHHHH------TT---------CCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ccccccccccccChhhh------cC---------CCCCCCcccccccchHHHHhhCCCCCCCC
Confidence 36778899999999999 33 56678999999999999999999 99543
|
| >d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Sky1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.33 E-value=1.9e-13 Score=132.30 Aligned_cols=46 Identities=30% Similarity=0.750 Sum_probs=38.2
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHH
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKE 92 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~ 92 (552)
....+||+.|||||++. ...+++++|+|||||+|++|++|+ ||...
T Consensus 186 ~~~~~gt~~y~aPE~~~---------------~~~~~~~~DiwSlG~il~el~~g~~pF~~~ 232 (362)
T d1q8ya_ 186 YTNSIQTREYRSPEVLL---------------GAPWGCGADIWSTACLIFELITGDFLFEPD 232 (362)
T ss_dssp CCSCCSCGGGCCHHHHH---------------TCCCCTHHHHHHHHHHHHHHHHSSCCC---
T ss_pred cccccccccccChhhcc---------------ccCCCccccccchHHHHHHHHHCCCCCCCC
Confidence 56788999999999982 245678999999999999999999 99653
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.33 E-value=8.8e-11 Score=113.44 Aligned_cols=263 Identities=10% Similarity=-0.072 Sum_probs=164.2
Q ss_pred cEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEE---------cCCCcEEEEeCCCCCCCccccccccCCC--ce
Q 008820 273 SIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISG---------DSGGGIFVWSFSFPLGHEPLKKWNEEKD--WR 341 (552)
Q Consensus 273 ~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~---------~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~ 341 (552)
.|.+||..+++.+.++.++... .++|+|++..+.++. +.|+.|.+||..+.+....+........ ..
T Consensus 47 ~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~ 124 (368)
T d1mdah_ 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccC
Confidence 4667799999999998877665 588999888665543 3578899999987765443322111100 00
Q ss_pred eeeEEEEeeCCCEEEEee-CCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEEeCCCcEEEEECCCCceeEEEec
Q 008820 342 YSGIHALTTSGRYLYTGS-GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEE 420 (552)
Q Consensus 342 ~~~~~~~~~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 420 (552)
.....++++||++++++. .++.+.+||+.+++....+..+..... ....+..++..+.||++.++++...........
T Consensus 125 ~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~ 203 (368)
T d1mdah_ 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI-HPGAAATHYLGSCPASLAASDLAAAPAAAGIVG 203 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC-EEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred CccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE-ccCCCceEEEEcCCCCEEEEEecCCceeeeeee
Confidence 111358999999887765 579999999999999988876554321 111255788889999999999876554332211
Q ss_pred C-----CCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc--cee--e------------eecccceEEEEEecCCEEEE
Q 008820 421 D-----SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK--FMK--S------------MQTHKGSVFAVFLEGKWLFT 479 (552)
Q Consensus 421 ~-----~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~~~--~------------~~~h~~~v~~v~~~~~~l~s 479 (552)
. ....... ..+.+++..+.+. ++.+++++... ... . +.........+++++..++.
T Consensus 204 ~~~~~~~~~~~~~-~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v 280 (368)
T d1mdah_ 204 AQCTGAQNCSSQA-AQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI 280 (368)
T ss_dssp CCSCTTSCBCSCC-EEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred cccccccccceee-cccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEE
Confidence 1 1111112 3556666555433 34455554321 110 0 11122234566677776655
Q ss_pred EeCC---------CeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-Ce---EEEEeCCCeEEEEEecCCcceeEEE
Q 008820 480 GGWD---------KTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-GK---LFVGCADRTVKIALCNRQIPEIFSL 546 (552)
Q Consensus 480 gs~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~---l~s~s~Dg~v~iw~~~~~~~~~~~~ 546 (552)
...+ ..|.+||..+++....... ...+.+++|++ +. ++++..|+.|++||.. +++.+.++
T Consensus 281 ~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~------~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~-tgk~~~~i 353 (368)
T d1mdah_ 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISN------GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA-SDQDQSSV 353 (368)
T ss_dssp EEEECSSCTTSCEEEEEEEESSSCCEEECCEE------EEEECEEEECCSSSCEEEEEETTTTEEEEEESS-SCEEEEEC
T ss_pred EecCCCceeecCCceEEEEECCCCcEeEEecC------CCceeEEEECCCCCEEEEEEeCCCCeEEEEECC-CCCEEEEE
Confidence 4322 3588999998876555432 44588899994 32 4567789999999987 56666665
Q ss_pred ec
Q 008820 547 LL 548 (552)
Q Consensus 547 ~g 548 (552)
..
T Consensus 354 ~~ 355 (368)
T d1mdah_ 354 EL 355 (368)
T ss_dssp CC
T ss_pred EC
Confidence 53
|
| >d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: MAP kinase p38 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.9e-13 Score=131.43 Aligned_cols=114 Identities=14% Similarity=0.175 Sum_probs=66.7
Q ss_pred hhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchHHHhhhh----hhccccCCC
Q 008820 32 LSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTKELIDYI----RCVSTKASD 106 (552)
Q Consensus 32 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~~~~~~~----~~~~~~~~~ 106 (552)
.....||+.|||||++ .+ ....++++|||||||+||+|++|+ ||.+.+.... .........
T Consensus 175 ~~~~~g~~~y~apE~~------~~--------~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~ 240 (348)
T d2gfsa1 175 MTGYVATRWYRAPEIM------LN--------WMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGA 240 (348)
T ss_dssp GSSSCHHHHTSCHHHH------TT--------CSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCH
T ss_pred cccccccccccCchhh------cC--------CccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCh
Confidence 5678899999999998 22 234578999999999999999999 9965332211 000000000
Q ss_pred chhhhhhhhHHHHHHHH---HHH----hhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 107 DNIACLGMYMAWMEKVT---YLL----ENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 107 ~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
..+.... ......... ..+ .........++.+++.+||..+|.+||++.++.+
T Consensus 241 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~ 300 (348)
T d2gfsa1 241 ELLKKIS-SESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA 300 (348)
T ss_dssp HHHTTCC-CHHHHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHhhhcc-chhhhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhc
Confidence 0000000 000000000 000 0111123445889999999999999999887655
|
| >d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Protein kinase CK2, alpha subunit species: Rattus norvegicus [TaxId: 10116]
Probab=99.26 E-value=8.8e-13 Score=125.53 Aligned_cols=57 Identities=21% Similarity=0.371 Sum_probs=44.7
Q ss_pred cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-CchH
Q 008820 18 CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFTK 91 (552)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~~ 91 (552)
|+|+.+..... .+...||+.|+|||++ .+ ...++.++|||||||++|||++|+ ||..
T Consensus 175 G~a~~~~~~~~---~~~~~~t~~y~aPE~~------~~--------~~~~~~~~DiwslG~~l~e~~~g~~pf~~ 232 (328)
T d3bqca1 175 GLAEFYHPGQE---YNVRVASRYFKGPELL------VD--------YQMYDYSLDMWSLGCMLASMIFRKEPFFH 232 (328)
T ss_dssp GGCEECCTTCC---CCSCCSCGGGCCHHHH------TT--------CCCCCTHHHHHHHHHHHHHHHHTCSSSSC
T ss_pred ccceeccCCCc---ccccccCccccCcccc------cC--------CCCCCcccchhhhhhhhHHhccCCCCCCC
Confidence 66765554433 5678899999999998 32 234578999999999999999999 9943
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.25 E-value=5.2e-10 Score=107.87 Aligned_cols=251 Identities=10% Similarity=0.009 Sum_probs=153.6
Q ss_pred CCeEEEEEeecCccceEEEEEc--CCEEEEEe----------CCCcEEEEeCCCCeEEEEEeCCCC-------CeEEEEE
Q 008820 240 KGNVKFKDLQGHRDCVTGLAVG--GGFLFSSS----------FDKSIHVWSLKDFSHVHTFKGHDH-------KVMAVVY 300 (552)
Q Consensus 240 ~~~~~~~~l~~H~~~V~~l~~s--~~~l~s~s----------~dg~I~iwd~~~~~~~~~~~~h~~-------~v~~v~~ 300 (552)
+....+..+.++..+ .++|+ |++++.++ .|++|++||..+++.+..+..+.. ....++|
T Consensus 54 ~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~ 131 (368)
T d1mdah_ 54 GCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN 131 (368)
T ss_dssp TTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE
T ss_pred CCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEE
Confidence 333344445555544 46777 78777754 477899999999999988865432 2346899
Q ss_pred ecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEe--
Q 008820 301 VDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM-- 378 (552)
Q Consensus 301 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-- 378 (552)
+|+++.++++...++.+.+||+.+.+....+...... .........++..+.||.+..++..........
T Consensus 132 SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~ 203 (368)
T d1mdah_ 132 CASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF--------HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG 203 (368)
T ss_dssp CTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC--------CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred CCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc--------eEccCCCceEEEEcCCCCEEEEEecCCceeeeeee
Confidence 9999988777778899999999876543333221110 011223447778888999999988755433222
Q ss_pred ----cCCCCCeEEEEEeCCEEEEEeCCCcEEEEECCCCceeEEEecCC-----------CCceEEEEEEcCCCCEEEEEE
Q 008820 379 ----SGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDS-----------SGAVSSVLSLTAVQHTLVVSH 443 (552)
Q Consensus 379 ----~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~~~~s~~~~~l~~g~ 443 (552)
..+...+....+.....+....++.+++++...+.......... .... ..+++++++..+++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~a~~~~~~~~~v~~ 282 (368)
T d1mdah_ 204 AQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGF-QMVAKLKNTDGIMILT 282 (368)
T ss_dssp CCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSS-SCEEEETTTTEEEEEE
T ss_pred cccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCc-eeEEEcCCCCEEEEEe
Confidence 22333444555553322233445667777776655433221110 0001 1257888888777654
Q ss_pred CC---------CcEEEEeCC--cceeeeecccceEEEEEe--cCC--EEEEEeCCCeEEEEecCCCeeeeeecc
Q 008820 444 ES---------GSIKVWRND--KFMKSMQTHKGSVFAVFL--EGK--WLFTGGWDKTVSVQELAGDEFEEDVIP 502 (552)
Q Consensus 444 ~d---------g~i~iwd~~--~~~~~~~~h~~~v~~v~~--~~~--~l~sgs~dg~i~iwd~~~~~~~~~~~~ 502 (552)
.+ ..|.+||.. +.+..+. +...+.++.+ ||+ .++++..|+.|++||..+++....+..
T Consensus 283 ~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~ 355 (368)
T d1mdah_ 283 VEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp EECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred cCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence 32 258899965 3444444 2345555554 886 345677889999999999987766543
|
| >d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Protein kinase-like (PK-like) superfamily: Protein kinase-like (PK-like) family: Protein kinases, catalytic subunit domain: Cyclin-dependent PK, CDK5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=3.1e-12 Score=119.62 Aligned_cols=131 Identities=14% Similarity=0.099 Sum_probs=72.6
Q ss_pred hhcc--cccccccccchhhhhhhccccccccchHHHHHHhhccCceeecccccccccccccccchhhhhhhhhhCC-Cch
Q 008820 14 AKVG--CVGSRICDKEVGLFLSDFLESNVFFSPEVLYELFKKEGIWVECEESEFSVGYGSDVWPVACILLSLLIGE-QFT 90 (552)
Q Consensus 14 ~~~~--~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~~~~~~sDv~SlG~~l~~lltg~-pf~ 90 (552)
.|++ |.|+.+..... ......+++.|+|||++ .+ ....++++|||||||++|||++|+ ||.
T Consensus 140 ~kl~DFG~a~~~~~~~~--~~~~~~~~~~~~~pe~~------~~--------~~~~~~~~DiwSlG~il~ell~g~~p~~ 203 (292)
T d1unla_ 140 LKLANFGLARAFGIPVR--CYSAEVVTLWYRPPDVL------FG--------AKLYSTSIDMWSAGCIFAELANAGRPLF 203 (292)
T ss_dssp EEECCCTTCEECCSCCS--CCCSCCSCGGGCCHHHH------TT--------CSCCCTHHHHHHHHHHHHHHTTTSCCSC
T ss_pred eeeeecchhhcccCCCc--cceeeccccchhhhhHh------cc--------CCCCCchhhccccchHHHHHhhCCCCCC
Confidence 4555 55665554433 25566789999999998 22 223578999999999999999999 872
Q ss_pred -HHH----hhhhhhccccCCCchhhhhhhhHHHHH--H--HHHHHhhhhcCccccHHHHHHhhcccCCCCCcchhhHHH
Q 008820 91 -KEL----IDYIRCVSTKASDDNIACLGMYMAWME--K--VTYLLENKFGSEFVSLQLMFCQCLNFDPGCRPLLTNVWK 160 (552)
Q Consensus 91 -~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~l~~~~~~~l~~~p~~R~~~~~~~~ 160 (552)
+.+ ...+...........|........... . ...............+.+++.+||+.+|.+||++.++.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~ 282 (292)
T d1unla_ 204 PGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ 282 (292)
T ss_dssp CCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred CCCCHHHHHHHHHhhcCCCChhhhhhhhhcccccccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 211 111111111111111111000000000 0 000000111122345889999999999999999887544
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.07 E-value=6.3e-10 Score=107.39 Aligned_cols=220 Identities=9% Similarity=0.028 Sum_probs=141.2
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEEeC------------------------------CCCCeEEEEEecCCCCEEEEEcCC
Q 008820 265 LFSSSFDKSIHVWSLKDFSHVHTFKG------------------------------HDHKVMAVVYVDEDQPLCISGDSG 314 (552)
Q Consensus 265 l~s~s~dg~I~iwd~~~~~~~~~~~~------------------------------h~~~v~~v~~~~~~~~~l~s~~~d 314 (552)
++|++.+|.|++|++.+++.++++.. |........+.|+|..++++...+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 67888999999999999999888743 222334444568888788888899
Q ss_pred CcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCC--EEEEeeCCC-----------------cEEEEECCCCcee
Q 008820 315 GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR--YLYTGSGDR-----------------TIKAWSLLDGTLS 375 (552)
Q Consensus 315 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~sgs~dg-----------------~i~iwd~~~~~~~ 375 (552)
+.|.++|+++.+....+..... .. ..-.+++++|+ +++..+.+. .+..+|..+.+..
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g-~g---phgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~ 169 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNV-QA---IHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA 169 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTC-CC---EEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE
T ss_pred CEEEEEECCCCcEeeEEecCCC-CC---ccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceee
Confidence 9999999998765444332211 11 11247888888 554444332 2355888888877
Q ss_pred EEecCCCCCeEEEEEe--CCEEEEEeCC-----------------------------------------CcEEEEECCCC
Q 008820 376 CTMSGHKSAVSTLAVC--NGVLYSGSRD-----------------------------------------GTIRLWSLSDH 412 (552)
Q Consensus 376 ~~~~~h~~~v~~l~~~--~~~l~s~~~d-----------------------------------------g~i~iwd~~~~ 412 (552)
.++.... ....+.++ ++++++++.+ +.+.+++....
T Consensus 170 ~qI~v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~ 248 (441)
T d1qnia2 170 WQVIVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGES 248 (441)
T ss_dssp EEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSC
T ss_pred EEEecCC-CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCC
Confidence 7765433 35667777 3356555533 34445555555
Q ss_pred ceeEEEecCCCCceEEEEEEcCCCCEEEE-EECCCcEEEEeCCcceeeeecc---cceE----------EEEEe--cCCE
Q 008820 413 SLLTVLEEDSSGAVSSVLSLTAVQHTLVV-SHESGSIKVWRNDKFMKSMQTH---KGSV----------FAVFL--EGKW 476 (552)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iwd~~~~~~~~~~h---~~~v----------~~v~~--~~~~ 476 (552)
+.+..+..... ... +.++|||+++++ +..+++|.+||..+....+.++ ...+ ....| +|..
T Consensus 249 ~v~~~IPvgks--PhG-v~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~ 325 (441)
T d1qnia2 249 EFTRYIPVPKN--PHG-LNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNA 325 (441)
T ss_dssp SSEEEECCBSS--CCC-EEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEE
T ss_pred ceEEEEeCCCC--ccC-ceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceE
Confidence 55555554322 222 689999998765 5679999999976543322221 1111 11234 6677
Q ss_pred EEEEeCCCeEEEEecC
Q 008820 477 LFTGGWDKTVSVQELA 492 (552)
Q Consensus 477 l~sgs~dg~i~iwd~~ 492 (552)
+.+...|..|..|++.
T Consensus 326 yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 326 YTTLFIDSQVCKWNIA 341 (441)
T ss_dssp EEEETTTTEEEEEEHH
T ss_pred EEcccccceEEEeccc
Confidence 8888899999999974
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.01 E-value=2.7e-08 Score=99.01 Aligned_cols=297 Identities=11% Similarity=0.012 Sum_probs=159.5
Q ss_pred eecCccceEEEEEc--CCEEEEEeC---------CCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCc
Q 008820 248 LQGHRDCVTGLAVG--GGFLFSSSF---------DKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGG 316 (552)
Q Consensus 248 l~~H~~~V~~l~~s--~~~l~s~s~---------dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~ 316 (552)
|..|...|.++.|+ +++|+.++. ++.+.+||+++++. ..+..|...+..+.|+|++..++. ..++.
T Consensus 57 ~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~--~~~~~ 133 (470)
T d2bgra1 57 FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAY--VWNND 133 (470)
T ss_dssp TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEE--EETTE
T ss_pred hhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeE--eeccc
Confidence 45667889999999 999998753 56789999998874 557789999999999999887655 35678
Q ss_pred EEEEeCCCCCCCccccccccCC------C-------ceeeeEEEEeeCCCEEEEeeCCCc-EEEEEC-------------
Q 008820 317 IFVWSFSFPLGHEPLKKWNEEK------D-------WRYSGIHALTTSGRYLYTGSGDRT-IKAWSL------------- 369 (552)
Q Consensus 317 i~vwd~~~~~~~~~~~~~~~~~------~-------~~~~~~~~~~~~~~~l~sgs~dg~-i~iwd~------------- 369 (552)
+.+|+..++............. . ........++|||+.|+....|.+ +..|++
T Consensus 134 l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~ 213 (470)
T d2bgra1 134 IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKT 213 (470)
T ss_dssp EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEE
T ss_pred ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCee
Confidence 9999988765433222111000 0 001123468999998888765533 443332
Q ss_pred ----------------------CCCceeEEe-----------cCCCCCeEEEEEe-CCE-EEE-EeCCC-----cEEEEE
Q 008820 370 ----------------------LDGTLSCTM-----------SGHKSAVSTLAVC-NGV-LYS-GSRDG-----TIRLWS 408 (552)
Q Consensus 370 ----------------------~~~~~~~~~-----------~~h~~~v~~l~~~-~~~-l~s-~~~dg-----~i~iwd 408 (552)
..++..... ......+..+.|. ++. ++. ....+ .+..+|
T Consensus 214 ~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d 293 (470)
T d2bgra1 214 VRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD 293 (470)
T ss_dssp EEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE
T ss_pred eeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEec
Confidence 111100000 0011223456666 332 222 22222 233344
Q ss_pred CCCCceeEEEe-----cCCC------CceEEEEEEcCCCCEEEEEECCCcEEEE--eCC-cceeeeecccceEEEE-Eec
Q 008820 409 LSDHSLLTVLE-----EDSS------GAVSSVLSLTAVQHTLVVSHESGSIKVW--RND-KFMKSMQTHKGSVFAV-FLE 473 (552)
Q Consensus 409 ~~~~~~~~~~~-----~~~~------~~~~~~~~~s~~~~~l~~g~~dg~i~iw--d~~-~~~~~~~~h~~~v~~v-~~~ 473 (552)
..++....... .... ........+..++.+++.+..||..++| +.. .....+..+...|..+ .++
T Consensus 294 ~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~~~~d 373 (470)
T d2bgra1 294 ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALT 373 (470)
T ss_dssp TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEEEEEC
T ss_pred CCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeEEEEEEEC
Confidence 45554332211 0000 0011112223334456667778776666 443 3444444445556655 456
Q ss_pred CCEE-EEEeCCC----eEEEE--ecCCCeeeeeeccCCCcccCcceEEEEEeCC-e-EE-E--EeCCCeEEEEEecCCcc
Q 008820 474 GKWL-FTGGWDK----TVSVQ--ELAGDEFEEDVIPTGAIPCGSVITALLYWQG-K-LF-V--GCADRTVKIALCNRQIP 541 (552)
Q Consensus 474 ~~~l-~sgs~dg----~i~iw--d~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~-l~-s--~s~Dg~v~iw~~~~~~~ 541 (552)
++.+ ++++.++ .-+|| ++.++.....+. .....+...+.+++|+|+ + ++ + +...-.+.+|+.. ++.
T Consensus 374 ~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt-~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~-~g~ 451 (470)
T d2bgra1 374 SDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLS-CELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV-NDK 451 (470)
T ss_dssp SSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESS-TTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT-TTE
T ss_pred CCEEEEEEecCCCCcceEEEEEEECCCCCceeEec-ccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECC-CCC
Confidence 6655 3444332 22344 444433222221 111223566899999964 3 33 3 3344568999877 677
Q ss_pred eeEEEecc
Q 008820 542 EIFSLLLH 549 (552)
Q Consensus 542 ~~~~~~gh 549 (552)
.+..+..+
T Consensus 452 ~v~~le~n 459 (470)
T d2bgra1 452 GLRVLEDN 459 (470)
T ss_dssp EEEEEECC
T ss_pred EEEEEecc
Confidence 77777554
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.72 E-value=1.1e-07 Score=91.39 Aligned_cols=225 Identities=9% Similarity=0.049 Sum_probs=137.1
Q ss_pred cCccceEEEEEc--CCEEEEE-eCCCcEEEEeCCCCeEEEEEeC-CCCCeEEEEEecCCCCEEEEEcCCCcE--------
Q 008820 250 GHRDCVTGLAVG--GGFLFSS-SFDKSIHVWSLKDFSHVHTFKG-HDHKVMAVVYVDEDQPLCISGDSGGGI-------- 317 (552)
Q Consensus 250 ~H~~~V~~l~~s--~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~i-------- 317 (552)
.|........++ |++|+.. ..+++|.++|+.++++...+.- +...+..++|+|+++...+++..+..+
T Consensus 69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~ 148 (441)
T d1qnia2 69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD 148 (441)
T ss_dssp BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence 344445444333 8877555 5788999999999999887763 567899999999887655555444333
Q ss_pred ----------EEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeC---------------------------
Q 008820 318 ----------FVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG--------------------------- 360 (552)
Q Consensus 318 ----------~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~--------------------------- 360 (552)
..+|..+......+..... ..-..++++|+++++.+.
T Consensus 149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~~~------p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~ 222 (441)
T d1qnia2 149 FSLDNSYTMFTAIDAETMDVAWQVIVDGN------LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERI 222 (441)
T ss_dssp CCGGGEEEEEEEEETTTCSEEEEEEESSC------CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHH
T ss_pred cccccccceEEeecCccceeeEEEecCCC------ccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccce
Confidence 3355554332222211111 112466777776665543
Q ss_pred --------------CCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-E-EEEEeCCCcEEEEECCCCcee--------
Q 008820 361 --------------DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-V-LYSGSRDGTIRLWSLSDHSLL-------- 415 (552)
Q Consensus 361 --------------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~-l~s~~~dg~i~iwd~~~~~~~-------- 415 (552)
++.+.+++....+.+..+..... ...+.++ ++ + ++++..+++|.+||+.+.+..
T Consensus 223 ~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~ 301 (441)
T d1qnia2 223 AAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELR 301 (441)
T ss_dssp HHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGG
T ss_pred EEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcc
Confidence 24455555555566666665444 4678888 44 4 566778999999998652210
Q ss_pred EEEecC-CCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc------------ceeee-----ecccceEEEEE--ecCC
Q 008820 416 TVLEED-SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK------------FMKSM-----QTHKGSVFAVF--LEGK 475 (552)
Q Consensus 416 ~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~------------~~~~~-----~~h~~~v~~v~--~~~~ 475 (552)
..+..+ ..+.-..-..|+++|+.+.+...|..|..|++.. .+..+ .+|...+.+.+ +||+
T Consensus 302 ~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk 381 (441)
T d1qnia2 302 DTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGK 381 (441)
T ss_dssp GGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCC
T ss_pred eEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCc
Confidence 011110 1111122258999998888888999999998542 22233 35554444443 5999
Q ss_pred EEEEEe
Q 008820 476 WLFTGG 481 (552)
Q Consensus 476 ~l~sgs 481 (552)
+|++++
T Consensus 382 ~l~s~~ 387 (441)
T d1qnia2 382 WLVVLS 387 (441)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 999994
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.70 E-value=2e-05 Score=71.69 Aligned_cols=235 Identities=9% Similarity=0.111 Sum_probs=142.5
Q ss_pred CeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcccccccc--CCCceeeeEEEEeeC-CCEEEE-eeCCCcEEEEEC
Q 008820 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNE--EKDWRYSGIHALTTS-GRYLYT-GSGDRTIKAWSL 369 (552)
Q Consensus 294 ~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~l~s-gs~dg~i~iwd~ 369 (552)
....+++.++++ ++++-..++.|++||.+. .....+..... ........+ ++..+ +..+++ .+.++.|..++.
T Consensus 24 ~P~gvavd~dg~-i~VaD~~n~rI~v~d~~G-~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (279)
T d1q7fa_ 24 EPSGVAVNAQND-IIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRV-AVVRNSGDIIVTERSPTHQIQIYNQ 100 (279)
T ss_dssp CEEEEEECTTCC-EEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEE-EEETTTTEEEEEECGGGCEEEEECT
T ss_pred CccEEEEcCCCC-EEEEECCCCEEEEEeCCC-CEEEEecccCCCcccccccccc-cccccccccceeccCCccccccccc
Confidence 457888888655 667767788899998652 11111111100 011111122 22333 334443 345567777775
Q ss_pred CCCceeEEec-CCCCCeEEEEEe-CC-EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCC
Q 008820 370 LDGTLSCTMS-GHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG 446 (552)
Q Consensus 370 ~~~~~~~~~~-~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 446 (552)
.++....+. ........+++. ++ ++++....+.+.+++. +++.+..+...........+++.++++.+++....+
T Consensus 101 -~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~ 178 (279)
T d1q7fa_ 101 -YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH 178 (279)
T ss_dssp -TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred -cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeecccc
Confidence 566666663 334556788887 33 5666666677888885 466666664433333334468889999888888889
Q ss_pred cEEEEeCC-cceeeee--cccceEEEEEe--cCCEEEEEeC-CCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEe-C
Q 008820 447 SIKVWRND-KFMKSMQ--THKGSVFAVFL--EGKWLFTGGW-DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYW-Q 519 (552)
Q Consensus 447 ~i~iwd~~-~~~~~~~--~h~~~v~~v~~--~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~ 519 (552)
.|++||.. +.+..+. +.......++. +|+.+++-+. ++.|.+|+.. +++...+..... ......+++. +
T Consensus 179 ~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~~~---~~~p~~vav~~d 254 (279)
T d1q7fa_ 179 CVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVK---HAQCFDVALMDD 254 (279)
T ss_dssp EEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSC---CSCEEEEEEETT
T ss_pred ceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEEEEEeCCCC---CCCEeEEEEeCC
Confidence 99999954 4444442 23344555554 7887776544 4579999865 444444332221 2346778888 4
Q ss_pred CeEEEEeCCCeEEEEEec
Q 008820 520 GKLFVGCADRTVKIALCN 537 (552)
Q Consensus 520 ~~l~s~s~Dg~v~iw~~~ 537 (552)
+.|++++.+..|++|++.
T Consensus 255 G~l~V~~~n~~v~~fr~~ 272 (279)
T d1q7fa_ 255 GSVVLASKDYRLYIYRYV 272 (279)
T ss_dssp TEEEEEETTTEEEEEECS
T ss_pred CcEEEEeCCCeEEEEEee
Confidence 678888899999999986
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.68 E-value=1.1e-05 Score=74.45 Aligned_cols=221 Identities=12% Similarity=0.063 Sum_probs=142.4
Q ss_pred ceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcc-
Q 008820 254 CVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP- 330 (552)
Q Consensus 254 ~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~- 330 (552)
.+..++++ |+++++...+++|..||... + ...+......+.+++|.+++. ++++...++.+..|+.........
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~ 105 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVET 105 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCC-eEEEecCCceEEEEEecccccceee
Confidence 57789998 89999999999999998553 3 334455667899999999776 777777888888887764322111
Q ss_pred ccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEec----------CCCCCeEEEEEeCC-EEEEEe
Q 008820 331 LKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMS----------GHKSAVSTLAVCNG-VLYSGS 399 (552)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~----------~h~~~v~~l~~~~~-~l~s~~ 399 (552)
+...... ....-..+.++++++++-+.++.+..+|...+....... ........+.++++ ++++.+
T Consensus 106 ~~~~~~~---~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~ 182 (302)
T d2p4oa1 106 LLTLPDA---IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNT 182 (302)
T ss_dssp EEECTTC---SCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEET
T ss_pred ccccCCc---cccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecC
Confidence 1111111 111234567788888888888999999987765432221 11234567777755 666777
Q ss_pred CCCcEEEEECCCCcee---EEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcceeee---ecccceEEEEEe-
Q 008820 400 RDGTIRLWSLSDHSLL---TVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSM---QTHKGSVFAVFL- 472 (552)
Q Consensus 400 ~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~---~~h~~~v~~v~~- 472 (552)
..+.|..++....... ..+... ..... ++++++|++.++...++.|..++.......+ ...-...+++.|
T Consensus 183 ~~~~i~~~~~~~~~~~~~~~~~~~~--~~pdg-ia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg 259 (302)
T d2p4oa1 183 EKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDD-FAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFG 259 (302)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEES--CCCSS-EEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEEC
T ss_pred CCCeEEeccccccccccccccccCC--CCCcc-eEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEc
Confidence 8889999988654322 111111 11222 6999999988888889999999865433322 223344566666
Q ss_pred ----cCCEEEEEeCC
Q 008820 473 ----EGKWLFTGGWD 483 (552)
Q Consensus 473 ----~~~~l~sgs~d 483 (552)
|++.|+.++..
T Consensus 260 ~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 260 QTEGDCTAIYVVTNG 274 (302)
T ss_dssp CSTTTTTEEEEEECT
T ss_pred CCCCCCCEEEEECCC
Confidence 55666655543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.68 E-value=6.8e-06 Score=74.17 Aligned_cols=232 Identities=8% Similarity=0.063 Sum_probs=124.4
Q ss_pred cEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCC
Q 008820 273 SIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSG 352 (552)
Q Consensus 273 ~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (552)
.|.|-|.+.. ....+..+...+...+|||+|+.++++....+.-.+|.............. .. .......+++++
T Consensus 20 ~l~i~d~dG~-~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~spdg 94 (269)
T d2hqsa1 20 ELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS--FP--RHNGAPAFSPDG 94 (269)
T ss_dssp EEEEEETTSC-SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC--CS--SCEEEEEECTTS
T ss_pred EEEEEcCCCC-CcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEee--ee--cccccceecCCC
Confidence 4777776543 334444456778899999999988777766655444433322211111111 11 112345788999
Q ss_pred CEEEEeeC-CCcEEEEE--CCCCceeEEecCCCCCeEEEEEe--CC-EEEEEeCCCc--EEEEECCCCceeEEEecCCCC
Q 008820 353 RYLYTGSG-DRTIKAWS--LLDGTLSCTMSGHKSAVSTLAVC--NG-VLYSGSRDGT--IRLWSLSDHSLLTVLEEDSSG 424 (552)
Q Consensus 353 ~~l~sgs~-dg~i~iwd--~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~ 424 (552)
+.++.... ++...++. ....... .............++ ++ .+++...++. |...++..+...... .. .
T Consensus 95 ~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~-~~--~ 170 (269)
T d2hqsa1 95 SKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT-WE--G 170 (269)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC-CS--S
T ss_pred CeeeEeeecCCccceeecccccccce-eeeeccccccccccccccccceecccccCCceEeeeecccccceeee-cc--c
Confidence 96665443 33333333 2222222 222233333444455 33 5555556664 555555554332222 22 2
Q ss_pred ceEEEEEEcCCCCEEEEEECCC-cEEE--EeCCcceeeeecccce--EEEEEecCCEEEEEeC---CCeEEEEecCCCee
Q 008820 425 AVSSVLSLTAVQHTLVVSHESG-SIKV--WRNDKFMKSMQTHKGS--VFAVFLEGKWLFTGGW---DKTVSVQELAGDEF 496 (552)
Q Consensus 425 ~~~~~~~~s~~~~~l~~g~~dg-~i~i--wd~~~~~~~~~~h~~~--v~~v~~~~~~l~sgs~---dg~i~iwd~~~~~~ 496 (552)
.......++|+++.++..+.++ ...+ .+..........+... -..+++||+.|+..+. ...|+++++.++..
T Consensus 171 ~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~ 250 (269)
T d2hqsa1 171 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 250 (269)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred ccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 2333358999999888766543 4444 4544433333333333 3356669998876553 34688999987755
Q ss_pred eeeeccCCCcccCcceEEEEEeC
Q 008820 497 EEDVIPTGAIPCGSVITALLYWQ 519 (552)
Q Consensus 497 ~~~~~~~~~~~~~~~v~~l~~~~ 519 (552)
...... ...+...+|+|
T Consensus 251 ~~lt~~------~g~~~~p~WSP 267 (269)
T d2hqsa1 251 ARLPAT------DGQVKFPAWSP 267 (269)
T ss_dssp EECCCS------SSEEEEEEECC
T ss_pred EEEeCC------CCcEEeEEeCC
Confidence 443222 44577778876
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.57 E-value=0.00011 Score=66.59 Aligned_cols=233 Identities=10% Similarity=0.153 Sum_probs=144.5
Q ss_pred cceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeC------CCCCeEEEEEecCCCCEEEE-EcCCCcEEEEeCC
Q 008820 253 DCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKG------HDHKVMAVVYVDEDQPLCIS-GDSGGGIFVWSFS 323 (552)
Q Consensus 253 ~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~------h~~~v~~v~~~~~~~~~l~s-~~~dg~i~vwd~~ 323 (552)
..-..++++ ++.+++-..++.|++||. +++.+..+.. .......+++.++....+++ .+.++.|..++..
T Consensus 23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (279)
T d1q7fa_ 23 TEPSGVAVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 101 (279)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred CCccEEEEcCCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence 346789987 777777777889999995 4777777632 12234566666655544443 3455677777654
Q ss_pred CCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEe--cCCCCCeEEEEEe-CC-EEEEEe
Q 008820 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTM--SGHKSAVSTLAVC-NG-VLYSGS 399 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~~-~~-~l~s~~ 399 (552)
.. ....+..... ......++.++++.+++....+.+.+++. +++.+..+ ..+......+++. ++ .+++..
T Consensus 102 g~----~~~~~~~~~~-~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~ 175 (279)
T d1q7fa_ 102 GQ----FVRKFGATIL-QHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 175 (279)
T ss_dssp SC----EEEEECTTTC-SCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred cc----ceeecCCCcc-cccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeec
Confidence 21 1111111111 11123456677777777777777888885 56666665 3455667788887 34 666677
Q ss_pred CCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEEC-CCcEEEEeC-Ccceeeeecc--cceEEEEE--ec
Q 008820 400 RDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHE-SGSIKVWRN-DKFMKSMQTH--KGSVFAVF--LE 473 (552)
Q Consensus 400 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~-~~~~~~~~~h--~~~v~~v~--~~ 473 (552)
..+.|++||. +++.+.++..........-+++.++|+++++-.. ++.|.+|+. ++.+..+... ......++ ++
T Consensus 176 ~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~d 254 (279)
T d1q7fa_ 176 RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDD 254 (279)
T ss_dssp GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETT
T ss_pred cccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCC
Confidence 7889999996 4666766643222222333689999997776543 457999985 4445555332 22344444 47
Q ss_pred CCEEEEEeCCCeEEEEecCCC
Q 008820 474 GKWLFTGGWDKTVSVQELAGD 494 (552)
Q Consensus 474 ~~~l~sgs~dg~i~iwd~~~~ 494 (552)
|.+ +.++.+..|++|.....
T Consensus 255 G~l-~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 255 GSV-VLASKDYRLYIYRYVQL 274 (279)
T ss_dssp TEE-EEEETTTEEEEEECSCC
T ss_pred CcE-EEEeCCCeEEEEEeeee
Confidence 764 55567899999988653
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.56 E-value=1.7e-06 Score=85.46 Aligned_cols=151 Identities=9% Similarity=0.058 Sum_probs=99.8
Q ss_pred EEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeC---------CCcEEE
Q 008820 296 MAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG---------DRTIKA 366 (552)
Q Consensus 296 ~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~---------dg~i~i 366 (552)
..+.|.++++ ++. ..|+.+.+||+.+++....+................|+||+++|+.++. ++.+.+
T Consensus 20 ~~~~W~~d~~-~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l 96 (470)
T d2bgra1 20 YSLRWISDHE-YLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (470)
T ss_dssp CCCEECSSSE-EEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred cCCEeCCCCE-EEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEE
Confidence 3567888664 433 4578999999998865433322111111111234578999998888753 567899
Q ss_pred EECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEeCCCcEEEEECCCCceeEEEecCCCCce----------------EE
Q 008820 367 WSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAV----------------SS 428 (552)
Q Consensus 367 wd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------------~~ 428 (552)
||+.+++. ..+..+...+..+.|+ ++ .++. ..++.+++|+..+++............. ..
T Consensus 97 ~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~-~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~ 174 (470)
T d2bgra1 97 YDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAY-VWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (470)
T ss_dssp EETTTTEE-CCSSCCCTTEEEEEECSSTTCEEE-EETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred EECCCCcc-cccccCCccccccccccCcceeeE-eecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcc
Confidence 99998875 4577889999999999 44 6665 4678899999998876654432211111 12
Q ss_pred EEEEcCCCCEEEEEECCCc-EEEE
Q 008820 429 VLSLTAVQHTLVVSHESGS-IKVW 451 (552)
Q Consensus 429 ~~~~s~~~~~l~~g~~dg~-i~iw 451 (552)
.+.|+|||+.|+....|.+ +..|
T Consensus 175 ~~~wSPDGk~ia~~~~d~~~v~~~ 198 (470)
T d2bgra1 175 ALWWSPNGTFLAYAQFNDTEVPLI 198 (470)
T ss_dssp CEEECTTSSEEEEEEEECTTCCEE
T ss_pred ccEECCCCCccceeEecCCcCceE
Confidence 2579999999999876533 4433
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.39 E-value=0.00011 Score=67.63 Aligned_cols=240 Identities=9% Similarity=0.012 Sum_probs=132.1
Q ss_pred CeEEEEEecCCCCEEEEEc------CCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEE
Q 008820 294 KVMAVVYVDEDQPLCISGD------SGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAW 367 (552)
Q Consensus 294 ~v~~v~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iw 367 (552)
....++|.+++..+++... .+|.|..||..++.............. ....-..+.++++.++++...+.|..+
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~-g~P~Gl~~~~dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYG-GIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEE-CCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCC-CcceeEEEeCCCCEEEEEECCCeEEEE
Confidence 3567788887764433222 146788888775432211110000000 011234678888888888777778899
Q ss_pred ECCCCceeEEecCCCC----CeEEEEEe-CCEEEEEeC----------------CCcEEEEECCCCceeEEEecCCCCce
Q 008820 368 SLLDGTLSCTMSGHKS----AVSTLAVC-NGVLYSGSR----------------DGTIRLWSLSDHSLLTVLEEDSSGAV 426 (552)
Q Consensus 368 d~~~~~~~~~~~~h~~----~v~~l~~~-~~~l~s~~~----------------dg~i~iwd~~~~~~~~~~~~~~~~~~ 426 (552)
|...+..........+ ..+.+++. ++.|+.+.. +|.|..++. .++.......- ...
T Consensus 98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~~--~~p 174 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTAF--QFP 174 (314)
T ss_dssp ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEEE--SSE
T ss_pred eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeCCc--cee
Confidence 9765543221111111 24678888 444444332 234444443 23332222211 112
Q ss_pred EEEEEEcCCCC-----EEEEEECCCcEEEEeCCcc--e------eeeec-ccceEEEEEe--cCCEEEEEeCCCeEEEEe
Q 008820 427 SSVLSLTAVQH-----TLVVSHESGSIKVWRNDKF--M------KSMQT-HKGSVFAVFL--EGKWLFTGGWDKTVSVQE 490 (552)
Q Consensus 427 ~~~~~~s~~~~-----~l~~g~~dg~i~iwd~~~~--~------~~~~~-h~~~v~~v~~--~~~~l~sgs~dg~i~iwd 490 (552)
.. +++++++. ++++-+..+.|+.||+... + ..+.. +....-.+++ +|+..++....+.|.+||
T Consensus 175 NG-i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~d 253 (314)
T d1pjxa_ 175 NG-IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG 253 (314)
T ss_dssp EE-EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred ee-eEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEe
Confidence 22 57777664 4444566788888874321 1 11111 1222334554 788888877889999999
Q ss_pred cCCCeeeeeeccCCCcccCcceEEEEEeCC--e-EEEEeCCCeEEEEEecCCccee
Q 008820 491 LAGDEFEEDVIPTGAIPCGSVITALLYWQG--K-LFVGCADRTVKIALCNRQIPEI 543 (552)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~-l~s~s~Dg~v~iw~~~~~~~~~ 543 (552)
..++......... ....++++|.++ . +++.+.+|.|...++...+.+.
T Consensus 254 p~~g~~~~~i~~p-----~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~~~ 304 (314)
T d1pjxa_ 254 PDGGQPKMRIRCP-----FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGKKQ 304 (314)
T ss_dssp TTCBSCSEEEECS-----SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBCCC
T ss_pred CCCCEEEEEEECC-----CCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCChhh
Confidence 9877655443322 345788999863 2 4566678989888888776543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.38 E-value=3.2e-05 Score=69.35 Aligned_cols=230 Identities=11% Similarity=0.030 Sum_probs=128.4
Q ss_pred ceEEEEEc--CCEEEEE-eCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcc
Q 008820 254 CVTGLAVG--GGFLFSS-SFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP 330 (552)
Q Consensus 254 ~V~~l~~s--~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 330 (552)
.-.+++++ |+..++. +..+.+..++............-......+++.+++. ++++....+.+++++-........
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~~~~~~ 93 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTVLP 93 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEECC
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCC-EEEeeeeeceeeeeeeccceeeee
Confidence 34788888 6655544 4556777776544332222112123456788888654 667766666676665443221111
Q ss_pred ccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCCCcEEEEE
Q 008820 331 LKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRDGTIRLWS 408 (552)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd 408 (552)
.. .. ....-.++.++++++++-..+..+..++..................+++++ ++.+++...++.|..+|
T Consensus 94 ~~---~~---~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d 167 (260)
T d1rwia_ 94 FD---GL---NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE 167 (260)
T ss_dssp CC---SC---CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred ee---ee---eecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccc
Confidence 11 11 111223666777777666666667777765433222212223345788887 34667777788899999
Q ss_pred CCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcceeeee--cccceEEEEEe--cCCEEEEEeCCC
Q 008820 409 LSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQ--THKGSVFAVFL--EGKWLFTGGWDK 484 (552)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~--~h~~~v~~v~~--~~~~l~sgs~dg 484 (552)
....... .+.......... +++.++|+++++....+.|..++......... ..-.....+++ +|..+++-..++
T Consensus 168 ~~~~~~~-~~~~~~~~~p~g-i~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~ 245 (260)
T d1rwia_ 168 AESNNQV-VLPFTDITAPWG-IAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGND 245 (260)
T ss_dssp TTTCCEE-ECCCSSCCSEEE-EEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGT
T ss_pred cccceee-eeeccccCCCcc-ceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCC
Confidence 7754433 332222233333 68999999888887788899888544322222 12233455655 667666656666
Q ss_pred eEEEEecC
Q 008820 485 TVSVQELA 492 (552)
Q Consensus 485 ~i~iwd~~ 492 (552)
+|+.++..
T Consensus 246 rI~~i~~~ 253 (260)
T d1rwia_ 246 RVVKLTSL 253 (260)
T ss_dssp EEEEECCC
T ss_pred EEEEEeCC
Confidence 66665543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.36 E-value=7.2e-05 Score=66.98 Aligned_cols=226 Identities=12% Similarity=0.021 Sum_probs=126.5
Q ss_pred CeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCc
Q 008820 294 KVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGT 373 (552)
Q Consensus 294 ~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~ 373 (552)
...++++.+++..+++..+..+.+..++....... ....... ....-.++.++++.+++....+.+++++-.+..
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~--~~~~~~~---~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~ 89 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT--VLPFNGL---YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ 89 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEE--ECCCCSC---CSCCCEEECTTCCEEEEETTTEEEEECTTCSCC
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEE--EeccCCc---cCceEEEEcCCCCEEEeeeeeceeeeeeeccce
Confidence 45889998877655545556677777765533211 1111111 111123677888877777666667666555544
Q ss_pred eeEEecCCCCCeEEEEEe-CC-EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEE
Q 008820 374 LSCTMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW 451 (552)
Q Consensus 374 ~~~~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 451 (552)
.+....+ .....++++. ++ ++++-..+..+..++...... ............. ++++++++++++...++.|..+
T Consensus 90 ~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~-i~~~~~g~~~v~~~~~~~i~~~ 166 (260)
T d1rwia_ 90 TVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-TVLPFTGLNDPDG-VAVDNSGNVYVTDTDNNRVVKL 166 (260)
T ss_dssp EECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC-EECCCCSCCSCCE-EEECTTCCEEEEEGGGTEEEEE
T ss_pred eeeeeee-eeecccccccccceeEeecccccccccccccccee-eeeeecccCCcce-eeecCCCCEeeecccccccccc
Confidence 4433332 3456889887 43 555555566677777654332 2222111122233 6888999988888888899999
Q ss_pred eCCcc-eeeee-cccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeC-CeEEEEe
Q 008820 452 RNDKF-MKSMQ-THKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQ-GKLFVGC 526 (552)
Q Consensus 452 d~~~~-~~~~~-~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~s~s 526 (552)
|.... ...+. ..-.....+.+ +|+++++....+.|..++..+...... ... . -.....+++++ +.|+.+.
T Consensus 167 d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~-~~~-~---~~~P~~i~~d~~g~l~vad 241 (260)
T d1rwia_ 167 EAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL-PFT-G---LNTPLAVAVDSDRTVYVAD 241 (260)
T ss_dssp CTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEEC-CCC-S---CCCEEEEEECTTCCEEEEE
T ss_pred ccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEE-ccC-C---CCCeEEEEEeCCCCEEEEE
Confidence 86532 22222 23344556665 677777777788898888765432221 111 1 23356788874 4455543
Q ss_pred -CCCeEE
Q 008820 527 -ADRTVK 532 (552)
Q Consensus 527 -~Dg~v~ 532 (552)
.+++|+
T Consensus 242 ~~~~rI~ 248 (260)
T d1rwia_ 242 RGNDRVV 248 (260)
T ss_dssp GGGTEEE
T ss_pred CCCCEEE
Confidence 344444
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.33 E-value=0.00025 Score=66.82 Aligned_cols=272 Identities=10% Similarity=0.079 Sum_probs=137.1
Q ss_pred EEEEEeC--CCcEEEE--eCCCCeEE--EEEe-CCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcccccccc
Q 008820 264 FLFSSSF--DKSIHVW--SLKDFSHV--HTFK-GHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNE 336 (552)
Q Consensus 264 ~l~s~s~--dg~I~iw--d~~~~~~~--~~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 336 (552)
.|+.|+. .+.|.++ |.++++.- .... .....+.-++|+++++.+.++ . .+.+..|.+..............
T Consensus 4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~-~-~~~~~~~~i~~~~~~~~~~~~~~ 81 (365)
T d1jofa_ 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGA-A-MKKWSSFAVKSPTEIVHEASHPI 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEE-E-BTEEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEE-e-CCcEEEEEEeCCCCeEEEeeecC
Confidence 3566654 4566554 55555532 2222 244556779999987755443 3 35677887764322111111110
Q ss_pred CCCceeeeEEEEeeCCCE--EEEee-CCCcEEEEECCC-------------Cce---eEE-ecCCCCCeEEEEEe-CC-E
Q 008820 337 EKDWRYSGIHALTTSGRY--LYTGS-GDRTIKAWSLLD-------------GTL---SCT-MSGHKSAVSTLAVC-NG-V 394 (552)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~--l~sgs-~dg~i~iwd~~~-------------~~~---~~~-~~~h~~~v~~l~~~-~~-~ 394 (552)
... ....+++++++. ++++. ..++|..+.+.. +.. ... -......+.++.|+ ++ +
T Consensus 82 ~~~---p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~ 158 (365)
T d1jofa_ 82 GGH---PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY 158 (365)
T ss_dssp CSS---GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred CCC---cEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCE
Confidence 000 011245566663 33322 235555544321 111 111 11223357899999 44 5
Q ss_pred EEEEe-CCCcEEEEECCCC-cee--EEEecCCCCceEEEEEEcCCCCEEEEEE-CCCcEEEEeCCc--ce--eeee----
Q 008820 395 LYSGS-RDGTIRLWSLSDH-SLL--TVLEEDSSGAVSSVLSLTAVQHTLVVSH-ESGSIKVWRNDK--FM--KSMQ---- 461 (552)
Q Consensus 395 l~s~~-~dg~i~iwd~~~~-~~~--~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~--~~--~~~~---- 461 (552)
+++++ ....|.+|+.... ... ........+.-..-+.|+|+++++++.. .+++|.+|+... .. ....
T Consensus 159 l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~ 238 (365)
T d1jofa_ 159 LYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL 238 (365)
T ss_dssp EEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred EEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecc
Confidence 66655 3567888876543 322 2222222233333479999999887665 478899998532 11 1100
Q ss_pred -------------cccceE--EEEEecCCEEEEEeC------CCeEEEEecCCCe-eeeeeccCCCcccCcceEEEEEeC
Q 008820 462 -------------THKGSV--FAVFLEGKWLFTGGW------DKTVSVQELAGDE-FEEDVIPTGAIPCGSVITALLYWQ 519 (552)
Q Consensus 462 -------------~h~~~v--~~v~~~~~~l~sgs~------dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~l~~~~ 519 (552)
.+.... ..+++||++|+++.. .+.|..|++.... ...................++++|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p 318 (365)
T d1jofa_ 239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCP 318 (365)
T ss_dssp SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECT
T ss_pred ccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecC
Confidence 011122 345569999987742 2347777775432 211111110111123355677764
Q ss_pred --Ce-EEEE-eCCCeEEEEEecCCc
Q 008820 520 --GK-LFVG-CADRTVKIALCNRQI 540 (552)
Q Consensus 520 --~~-l~s~-s~Dg~v~iw~~~~~~ 540 (552)
++ |+++ ..++.|.+|+++...
T Consensus 319 ~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 319 WSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp TCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 33 5554 578999999987543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.20 E-value=0.0021 Score=58.72 Aligned_cols=234 Identities=13% Similarity=0.087 Sum_probs=133.5
Q ss_pred eEEEEEc--CCEEEEEeC-------CCcEEEEeCCCCeEEEEEeCC----CCCeEEEEEecCCCCEEEEEcCCCcEEEEe
Q 008820 255 VTGLAVG--GGFLFSSSF-------DKSIHVWSLKDFSHVHTFKGH----DHKVMAVVYVDEDQPLCISGDSGGGIFVWS 321 (552)
Q Consensus 255 V~~l~~s--~~~l~s~s~-------dg~I~iwd~~~~~~~~~~~~h----~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 321 (552)
...++|+ |++.++... +++|..||..++......... .+.-..++|.++++.+ +++...+.|...+
T Consensus 20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l-~vad~~~~i~~~~ 98 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQL-FVADMRLGLLVVQ 98 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEE-EEEETTTEEEEEE
T ss_pred CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEE-EEEECCCeEEEEe
Confidence 4456777 665554322 467889998887654433221 2335789998877644 5555556688888
Q ss_pred CCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeC---------------CCcEEEEECCCCceeEEecCCCCCeE
Q 008820 322 FSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG---------------DRTIKAWSLLDGTLSCTMSGHKSAVS 386 (552)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~---------------dg~i~iwd~~~~~~~~~~~~h~~~v~ 386 (552)
.+.............. ......-..+.++|+..++-.. +|.|..++. .++...... .-..-+
T Consensus 99 ~~g~~~~~~~~~~~g~-~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~-~~~~pN 175 (314)
T d1pjxa_ 99 TDGTFEEIAKKDSEGR-RMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDT-AFQFPN 175 (314)
T ss_dssp TTSCEEECCSBCTTSC-BCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEE-EESSEE
T ss_pred CCCcEEEEEecccccc-ccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeC-Ccceee
Confidence 7643221111111111 1111122356777876665321 234444443 333332222 222346
Q ss_pred EEEEe-C-C-----EEEEEeCCCcEEEEECCCCceeEE------EecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeC
Q 008820 387 TLAVC-N-G-----VLYSGSRDGTIRLWSLSDHSLLTV------LEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN 453 (552)
Q Consensus 387 ~l~~~-~-~-----~l~s~~~dg~i~iwd~~~~~~~~~------~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 453 (552)
.++|+ + + +.++-+..+.|..||+.....+.. +....... ..-+++..+|++.++....+.|.+||.
T Consensus 176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~-pdGiavD~~GnlyVa~~~~g~I~~~dp 254 (314)
T d1pjxa_ 176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG-ADGMDFDEDNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE-EEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccccc-ceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence 78887 2 2 344556788899998764433221 11111122 233689999998888888899999995
Q ss_pred C--cceeeeecccceEEEEEe--cCC-EEEEEeCCCeEEEEecCC
Q 008820 454 D--KFMKSMQTHKGSVFAVFL--EGK-WLFTGGWDKTVSVQELAG 493 (552)
Q Consensus 454 ~--~~~~~~~~h~~~v~~v~~--~~~-~l~sgs~dg~i~iwd~~~ 493 (552)
. .....+..+.....+++| +++ .+++.+.+|.|...++..
T Consensus 255 ~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 4 345556665566777887 665 456667788898888764
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.16 E-value=0.0026 Score=58.29 Aligned_cols=225 Identities=11% Similarity=0.046 Sum_probs=128.8
Q ss_pred ccceEEEEEc--CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcC--CCc--EEEEeCCCC
Q 008820 252 RDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDS--GGG--IFVWSFSFP 325 (552)
Q Consensus 252 ~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~--dg~--i~vwd~~~~ 325 (552)
...+..++|+ |++.++-...+.|..|+.++++....+.........+++.+++. ++++... ... +...+....
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~-l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSC
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCC-EEEEecCCCccceeEEEEcCCCc
Confidence 3455788998 77777777889999999888777666666667789999998775 5454432 223 444443332
Q ss_pred CCCccccccccCCCceeeeEEEEeeCCCEEEEeeC------CCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EE-E
Q 008820 326 LGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG------DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VL-Y 396 (552)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l-~ 396 (552)
......... .......-..+.++|++.++... .+.+..++...+ .+..+...-...+.++|+ ++ .| +
T Consensus 118 ~~~~~~~~~---~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyv 193 (319)
T d2dg1a1 118 NLQDIIEDL---STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEKVLWV 193 (319)
T ss_dssp SCEEEECSS---SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSSEEEE
T ss_pred eeeeeccCC---CcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeeccccceEEE
Confidence 211111111 11111122456778875555322 133555554433 333322223345789998 33 44 5
Q ss_pred EEeCCCcEEEEECCCC-ceeEEE-----ecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCC-cceeeee------cc
Q 008820 397 SGSRDGTIRLWSLSDH-SLLTVL-----EEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRND-KFMKSMQ------TH 463 (552)
Q Consensus 397 s~~~dg~i~iwd~~~~-~~~~~~-----~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~-~~~~~~~------~h 463 (552)
+-+..+.|..||+... ...... ..........-+++..+|++.++....+.|.+||.. +.+..+. ++
T Consensus 194 ad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~ 273 (319)
T d2dg1a1 194 TETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGH 273 (319)
T ss_dssp EEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTC
T ss_pred ecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCc
Confidence 5567889999998643 221111 111111123337899999988888889999999953 4444443 23
Q ss_pred cceEEEEEe--cCCEEEEEe
Q 008820 464 KGSVFAVFL--EGKWLFTGG 481 (552)
Q Consensus 464 ~~~v~~v~~--~~~~l~sgs 481 (552)
...+.++.+ +...+++.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 274 MLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp SCBCCEEEECTTSCEEEEEE
T ss_pred CceeeeEEEeCCCCEEEEEc
Confidence 345567776 444554443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.03 E-value=0.0025 Score=58.36 Aligned_cols=226 Identities=12% Similarity=0.072 Sum_probs=120.9
Q ss_pred CCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeC----CCcEEE
Q 008820 291 HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG----DRTIKA 366 (552)
Q Consensus 291 h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~----dg~i~i 366 (552)
....+..++|.+++. +.++-..++.|..|+.+.......... ... . ..-.++.++|+.+++... .+.+..
T Consensus 38 ~~~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~~~~---~~~-~-p~gla~~~dG~l~va~~~~~~~~~~i~~ 111 (319)
T d2dg1a1 38 KGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPFVS---HKA-N-PAAIKIHKDGRLFVCYLGDFKSTGGIFA 111 (319)
T ss_dssp SCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC---SSS-S-EEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred CCcCcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEEEEeC---CCC-C-eeEEEECCCCCEEEEecCCCccceeEEE
Confidence 334456788877664 666777788888887765322211111 110 1 123467788886666433 234555
Q ss_pred EECCCCceeEEecC--CCCCeEEEEEe-CCEEEEEeCC-------CcEEEEECCCCceeEEEecCCCCceEEEEEEcCCC
Q 008820 367 WSLLDGTLSCTMSG--HKSAVSTLAVC-NGVLYSGSRD-------GTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQ 436 (552)
Q Consensus 367 wd~~~~~~~~~~~~--h~~~v~~l~~~-~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 436 (552)
.+...+........ -....+.+++. ++.++.+..+ +.+..++...+. +..+... -..... +++++++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~-~~~pnG-ia~s~dg 188 (319)
T d2dg1a1 112 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQN-ISVANG-IALSTDE 188 (319)
T ss_dssp ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEE-ESSEEE-EEECTTS
T ss_pred EcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeec-cceeee-eeecccc
Confidence 55555544433322 12346778887 5555554432 235555544333 2222211 112233 6999999
Q ss_pred CEEEEE-ECCCcEEEEeCCc---ceeeee-------cccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccC
Q 008820 437 HTLVVS-HESGSIKVWRNDK---FMKSMQ-------THKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPT 503 (552)
Q Consensus 437 ~~l~~g-~~dg~i~iwd~~~---~~~~~~-------~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~ 503 (552)
+.|+.+ +..+.|+.||+.. ...... ......-.+.+ +|++.++....+.|.+||-. ++........
T Consensus 189 ~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~-G~~l~~i~~P 267 (319)
T d2dg1a1 189 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIP 267 (319)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECT
T ss_pred ceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC-CcEEEEEeCC
Confidence 876555 5578999998532 111110 01112233444 78888888889999999975 4444433322
Q ss_pred -CCcccCcceEEEEEeCC--eEEEEe
Q 008820 504 -GAIPCGSVITALLYWQG--KLFVGC 526 (552)
Q Consensus 504 -~~~~~~~~v~~l~~~~~--~l~s~s 526 (552)
........+++++|.++ .+++.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 268 GRDEGHMLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp TGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred CcCCCcCceeeeEEEeCCCCEEEEEc
Confidence 11122345778888753 455443
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.00 E-value=0.0012 Score=60.08 Aligned_cols=220 Identities=11% Similarity=0.065 Sum_probs=126.0
Q ss_pred ceeeecCcceEEEeeCCCeEEEE-------EeecCccceEEEEEc--CCEEEEEeCCCcEEEEeCCCC--eEEEEE-eCC
Q 008820 224 QARAAGGVKDLVNGLSKGNVKFK-------DLQGHRDCVTGLAVG--GGFLFSSSFDKSIHVWSLKDF--SHVHTF-KGH 291 (552)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~-------~l~~H~~~V~~l~~s--~~~l~s~s~dg~I~iwd~~~~--~~~~~~-~~h 291 (552)
.+++.+++..+++....+.+..+ .+......+.+++|+ |+++++...++.+..|+.... ...... ...
T Consensus 32 ~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (302)
T d2p4oa1 32 NLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPD 111 (302)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTT
T ss_pred CEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCC
Confidence 44556666666665555544322 234456788999998 888888888888888876432 222221 224
Q ss_pred CCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcccccc---ccCCCceeeeEEEEeeCCC-EEEEeeCCCcEEEE
Q 008820 292 DHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKW---NEEKDWRYSGIHALTTSGR-YLYTGSGDRTIKAW 367 (552)
Q Consensus 292 ~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~l~sgs~dg~i~iw 367 (552)
......+++.+++ .++++-+.++.+..+|...+......... .............+.++++ .+++.+..+.|+.+
T Consensus 112 ~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~ 190 (302)
T d2p4oa1 112 AIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRI 190 (302)
T ss_dssp CSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEE
T ss_pred ccccceeEEccCC-CEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEec
Confidence 4567889988865 56677778888888887654311110000 0000001112234455555 55666778888888
Q ss_pred ECCCCceeE--EecCCCCCeEEEEEe-CC-EEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEE---cCCCCEEE
Q 008820 368 SLLDGTLSC--TMSGHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSL---TAVQHTLV 440 (552)
Q Consensus 368 d~~~~~~~~--~~~~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~l~ 440 (552)
+........ ...........++++ ++ +.++...++.|..++.. ++................++| ++|++.|+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Ly 269 (302)
T d2p4oa1 191 PVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIY 269 (302)
T ss_dssp EBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred cccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEE
Confidence 876543221 111122345678888 44 55666678899999875 443333332212222333688 67888888
Q ss_pred EEECC
Q 008820 441 VSHES 445 (552)
Q Consensus 441 ~g~~d 445 (552)
+++..
T Consensus 270 vtt~~ 274 (302)
T d2p4oa1 270 VVTNG 274 (302)
T ss_dssp EEECT
T ss_pred EECCC
Confidence 76654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.99 E-value=0.0045 Score=54.66 Aligned_cols=215 Identities=11% Similarity=0.112 Sum_probs=120.1
Q ss_pred eecCccceEEEEEc--CCEEEEEeCCC---cEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeC
Q 008820 248 LQGHRDCVTGLAVG--GGFLFSSSFDK---SIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSF 322 (552)
Q Consensus 248 l~~H~~~V~~l~~s--~~~l~s~s~dg---~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 322 (552)
+..+.+.+.+.+|| |+.||-..... .+.+.+...+.. ..+..+.+......|+|++..++.....++...++..
T Consensus 34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~ 112 (269)
T d2hqsa1 34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 112 (269)
T ss_dssp EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccceeec
Confidence 33456678899999 89988765543 366667666554 4455677888999999999888777766666555544
Q ss_pred CCCCCCccccccccCCCceeeeEEEEeeCCC-EEEEeeCCCc--EEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEE
Q 008820 323 SFPLGHEPLKKWNEEKDWRYSGIHALTTSGR-YLYTGSGDRT--IKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYS 397 (552)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~dg~--i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s 397 (552)
......... ..... .......++++++ .+++...+|. |...++..+.. ..+..+........|+ ++ .++.
T Consensus 113 ~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~ 187 (269)
T d2hqsa1 113 DLASGQIRQ-VTDGR---SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVM 187 (269)
T ss_dssp ETTTCCEEE-CCCCS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEE
T ss_pred cccccccee-eeecc---ccccccccccccccceecccccCCceEeeeecccccc-eeeecccccccccccccccceeEE
Confidence 332211111 11111 1112234555555 4444445554 55556555433 3344455666677787 33 4444
Q ss_pred -EeCCCcEEEE--ECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEEC---CCcEEEEeCCc-ceeeeecccceEEEE
Q 008820 398 -GSRDGTIRLW--SLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHE---SGSIKVWRNDK-FMKSMQTHKGSVFAV 470 (552)
Q Consensus 398 -~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i~iwd~~~-~~~~~~~h~~~v~~v 470 (552)
....+...+| |...+.. ..... ...... ..|+|||+.|+..+. ...|+++++.. ....+....+.+...
T Consensus 188 ~~~~~~~~~i~~~~~~~~~~--~~~~~-~~~~~~-p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p 263 (269)
T d2hqsa1 188 VSSNGGQQHIAKQDLATGGV--QVLSS-TFLDET-PSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFP 263 (269)
T ss_dssp EEECSSCEEEEEEETTTCCE--EECCC-SSSCEE-EEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEE
T ss_pred EeecCCceeeeEeecccccc--eEeec-Cccccc-eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeE
Confidence 4444554444 4444432 22222 222233 589999998876553 34577788543 334455555555554
Q ss_pred Ee
Q 008820 471 FL 472 (552)
Q Consensus 471 ~~ 472 (552)
+|
T Consensus 264 ~W 265 (269)
T d2hqsa1 264 AW 265 (269)
T ss_dssp EE
T ss_pred Ee
Confidence 44
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.94 E-value=0.0014 Score=61.39 Aligned_cols=161 Identities=16% Similarity=0.187 Sum_probs=90.2
Q ss_pred CCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEE-eeCCCcEEEEECCC
Q 008820 293 HKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYT-GSGDRTIKAWSLLD 371 (552)
Q Consensus 293 ~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-gs~dg~i~iwd~~~ 371 (552)
..+.++.|+|++..++++......|.+|+.......................-..++++++++++ .-.+++|.+|+...
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~ 224 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence 45789999999887777777777899998765433222222111111112223578899996654 45678999999876
Q ss_pred CceeE--E---ec--------------CCCCCeEEEEEe-CC-EEEEEeC-C-----CcEEEEECCCCceeEE----Eec
Q 008820 372 GTLSC--T---MS--------------GHKSAVSTLAVC-NG-VLYSGSR-D-----GTIRLWSLSDHSLLTV----LEE 420 (552)
Q Consensus 372 ~~~~~--~---~~--------------~h~~~v~~l~~~-~~-~l~s~~~-d-----g~i~iwd~~~~~~~~~----~~~ 420 (552)
++... . .. .+......+.++ ++ +++++.. + +.|..|++.....+.. ...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 304 (365)
T d1jofa_ 225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT 304 (365)
T ss_dssp TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence 54321 1 10 011224567777 44 6655532 2 2377777654322211 111
Q ss_pred CCCCceEEEEEEcC-CCCEEEEEE-CCCcEEEEeC
Q 008820 421 DSSGAVSSVLSLTA-VQHTLVVSH-ESGSIKVWRN 453 (552)
Q Consensus 421 ~~~~~~~~~~~~s~-~~~~l~~g~-~dg~i~iwd~ 453 (552)
...+.....++++| +|++|+++. .++.|.+|+.
T Consensus 305 ~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~ 339 (365)
T d1jofa_ 305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence 11111122257776 788776664 5688888864
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.84 E-value=0.0096 Score=53.59 Aligned_cols=215 Identities=9% Similarity=0.103 Sum_probs=126.8
Q ss_pred EEEEc---CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccc
Q 008820 257 GLAVG---GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKK 333 (552)
Q Consensus 257 ~l~~s---~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 333 (552)
+..|+ +.+..+=-..+.|..||.++++.. .+. ....+.++++.+++. ++++ +. ..+..+|..+++......
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~-l~va-~~-~gl~~~d~~tg~~~~l~~- 95 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSK-QLIA-SD-DGLFLRDTATGVLTLHAE- 95 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTE-EEEE-ET-TEEEEEETTTCCEEEEEC-
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCC-EEEE-Ee-CccEEeecccceeeEEee-
Confidence 34455 334444445678989998887653 332 345688888887654 4443 44 458889988764322211
Q ss_pred cccCCCceeeeEEEEeeCCCEEEEeeC----CCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC--EEEEEeCCCcEEE
Q 008820 334 WNEEKDWRYSGIHALTTSGRYLYTGSG----DRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG--VLYSGSRDGTIRL 406 (552)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~l~sgs~----dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~--~l~s~~~dg~i~i 406 (552)
...........-..+.++|++.++... .+.-.+|.+..++....... -..-+.++|+ ++ ++++-+..+.|..
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~ 174 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMR 174 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeE
Confidence 111111122223356777875554332 23445676667765554443 2345788888 33 5566677889999
Q ss_pred EECCCC------ceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEEeC-CcceeeeecccceEEEEEe---cCCE
Q 008820 407 WSLSDH------SLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRN-DKFMKSMQTHKGSVFAVFL---EGKW 476 (552)
Q Consensus 407 wd~~~~------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~-~~~~~~~~~h~~~v~~v~~---~~~~ 476 (552)
+++... +...............-+++..+|++.++.-..+.|..||. ++.+..+......+++++| +.+.
T Consensus 175 ~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP~~~~T~~~FGG~d~~~ 254 (295)
T d2ghsa1 175 VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASR 254 (295)
T ss_dssp EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCE
T ss_pred eeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCcEeeEecCCCCceEEEEEeCCCCCE
Confidence 987432 11111222112223334688999998888778889999994 4666777666667888888 4444
Q ss_pred EE
Q 008820 477 LF 478 (552)
Q Consensus 477 l~ 478 (552)
|+
T Consensus 255 Ly 256 (295)
T d2ghsa1 255 LL 256 (295)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.83 E-value=0.0032 Score=62.64 Aligned_cols=283 Identities=16% Similarity=0.066 Sum_probs=155.8
Q ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCC----CCeEEEEEecCCCCEEEEEc------CCCcEEEEeCCCCC
Q 008820 257 GLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHD----HKVMAVVYVDEDQPLCISGD------SGGGIFVWSFSFPL 326 (552)
Q Consensus 257 ~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~----~~v~~v~~~~~~~~~l~s~~------~dg~i~vwd~~~~~ 326 (552)
.+++.+..++.++.|+.+..-|.++|+.+....... ..++.--... +..+ +.+. .+|.|+-+|+.+++
T Consensus 110 g~a~~~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~-~~~v-ivg~~~~~~~~~G~v~a~D~~TG~ 187 (571)
T d2ad6a1 110 GLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTV-LMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp CCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEE-EEECBCGGGTCCCEEEEEETTTCC
T ss_pred cceeeCCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEe-CCeE-EEeeccccccccCcEEEEECCCCc
Confidence 456677788889999999999999999988765321 1111110111 2323 3333 36889999999886
Q ss_pred CCccccccccC---------------------------------CCceeeeEEEEeeCCCEEEEeeC-------------
Q 008820 327 GHEPLKKWNEE---------------------------------KDWRYSGIHALTTSGRYLYTGSG------------- 360 (552)
Q Consensus 327 ~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~l~sgs~------------- 360 (552)
........... .....-...++.+....++.+..
T Consensus 188 ~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~ 267 (571)
T d2ad6a1 188 LKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGD 267 (571)
T ss_dssp EEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSC
T ss_pred EEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccc
Confidence 55432221100 00001112245555555555443
Q ss_pred ---CCcEEEEECCCCceeEEecCCCCC----------eE-EEEEeCC---EEEEEeCCCcEEEEECCCCceeEEEecCCC
Q 008820 361 ---DRTIKAWSLLDGTLSCTMSGHKSA----------VS-TLAVCNG---VLYSGSRDGTIRLWSLSDHSLLTVLEEDSS 423 (552)
Q Consensus 361 ---dg~i~iwd~~~~~~~~~~~~h~~~----------v~-~l~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 423 (552)
...+...|.++|+.+..++.+... +. .+...++ .++.++.+|.+.++|..+|+.+........
T Consensus 268 n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~ 347 (571)
T d2ad6a1 268 NKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA 347 (571)
T ss_dssp CTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred cccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCc
Confidence 346888999999999887643221 11 2222222 567889999999999999998765433211
Q ss_pred Cce-------------------------------------EEEEEEcCCCCEEEEEECCCcEEEEeCCcceeeeecccce
Q 008820 424 GAV-------------------------------------SSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSMQTHKGS 466 (552)
Q Consensus 424 ~~~-------------------------------------~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~h~~~ 466 (552)
... ....+++|+..++++...+....+.........-......
T Consensus 348 ~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (571)
T d2ad6a1 348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA 427 (571)
T ss_dssp CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred ccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCcccccc
Confidence 000 0113455666666665554332222111111100001111
Q ss_pred EEEEEecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEecCCcceeEEE
Q 008820 467 VFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCNRQIPEIFSL 546 (552)
Q Consensus 467 v~~v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~~~~~~~~~~ 546 (552)
...+.+... .......|.|.-+|+.+++............ .+ .+...++.+++|+.||.++.+|.+ +++++.++
T Consensus 428 ~~~~~~~~~-~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~-~g---~l~TagglVf~G~~dg~l~A~Da~-tGe~lW~~ 501 (571)
T d2ad6a1 428 TLAMYPGPN-GPTKKEMGQIRAFDLTTGKAKWTKWEKFAAW-GG---TLYTKGGLVWYATLDGYLKALDNK-DGKELWNF 501 (571)
T ss_dssp EEEEEECTT-STTSCCCEEEEEECTTTCCEEEEEEESSCCC-SB---CEEETTTEEEEECTTSEEEEEETT-TCCEEEEE
T ss_pred ceeeccccC-CcccCCcccEEEeccCCCceeeEcCCCCCCC-cc---eeEecCCEEEEECCCCeEEEEECC-CCcEEEEE
Confidence 111111100 0011223689999999998887655432211 11 233457888899999999999998 67777666
Q ss_pred e
Q 008820 547 L 547 (552)
Q Consensus 547 ~ 547 (552)
.
T Consensus 502 ~ 502 (571)
T d2ad6a1 502 K 502 (571)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.80 E-value=0.022 Score=56.64 Aligned_cols=190 Identities=11% Similarity=0.028 Sum_probs=110.9
Q ss_pred CCEEEEEeCCCcEEEEeC-CCCeEEEEEeCCCC-----------CeEEEEEecCC---CCEEEEEcCCCcEEEEeCCCCC
Q 008820 262 GGFLFSSSFDKSIHVWSL-KDFSHVHTFKGHDH-----------KVMAVVYVDED---QPLCISGDSGGGIFVWSFSFPL 326 (552)
Q Consensus 262 ~~~l~s~s~dg~I~iwd~-~~~~~~~~~~~h~~-----------~v~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~ 326 (552)
+.++++++.++.|...|. ++|+.+.++..... .-..+++.+.. ...++.++.|+.|.-.|..+++
T Consensus 63 g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~ 142 (596)
T d1w6sa_ 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE 142 (596)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred CEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCc
Confidence 554555666678888887 58999998753111 11345555432 3467888999999999998886
Q ss_pred CCccccccccCCCceeeeEEEEeeCCCEEEEeeC------CCcEEEEECCCCceeEEecCCC------------------
Q 008820 327 GHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSG------DRTIKAWSLLDGTLSCTMSGHK------------------ 382 (552)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~------dg~i~iwd~~~~~~~~~~~~h~------------------ 382 (552)
.................. +-...++.+++|+. .|.|+-+|+++|+.+.++....
T Consensus 143 ~~w~~~~~d~~~~~~~t~--~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~ 220 (596)
T d1w6sa_ 143 TVWKVENSDIKVGSTLTI--APYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHY 220 (596)
T ss_dssp EEEEEECCCGGGTCBCCS--CCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred eecccccccccccccccc--CCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccc
Confidence 554433211111100000 00112445666643 4899999999999998864211
Q ss_pred -------------------CCe-EEEEEe--CCEEEEEeC----------------CCcEEEEECCCCceeEEEecCCCC
Q 008820 383 -------------------SAV-STLAVC--NGVLYSGSR----------------DGTIRLWSLSDHSLLTVLEEDSSG 424 (552)
Q Consensus 383 -------------------~~v-~~l~~~--~~~l~s~~~----------------dg~i~iwd~~~~~~~~~~~~~~~~ 424 (552)
..+ ..++++ .++++.+.. ...|...|+++|+.+..++..+..
T Consensus 221 g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D 300 (596)
T d1w6sa_ 221 GQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHD 300 (596)
T ss_dssp CCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTC
T ss_pred cccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceecc
Confidence 111 233444 345554432 345888999999999888754321
Q ss_pred ce-------EEEEE-EcCCC---CEEEEEECCCcEEEEeC
Q 008820 425 AV-------SSVLS-LTAVQ---HTLVVSHESGSIKVWRN 453 (552)
Q Consensus 425 ~~-------~~~~~-~s~~~---~~l~~g~~dg~i~iwd~ 453 (552)
.. ..... ...++ ..++....+|.++++|.
T Consensus 301 ~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr 340 (596)
T d1w6sa_ 301 EWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDR 340 (596)
T ss_dssp SSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred ccCCccccceeeeeccccccccccceeccccccceeeecC
Confidence 11 11111 12334 35777788888988883
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.64 E-value=0.015 Score=57.50 Aligned_cols=278 Identities=10% Similarity=0.038 Sum_probs=157.7
Q ss_pred cCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCC----------C-eEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCc
Q 008820 261 GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH----------K-VMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHE 329 (552)
Q Consensus 261 s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~----------~-v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 329 (552)
.+..|+.++.++.|.-.|.++|+.+.++..... . -..++.. +..++.++.|+.+...|..+++...
T Consensus 65 ~~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~g~l~Alda~tG~~~w 141 (560)
T d1kv9a2 65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW---GDKVYVGTLDGRLIALDAKTGKAIW 141 (560)
T ss_dssp ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---BTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ECCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCccee---CCeEEEEeCCCEEEEEECCCCcEEe
Confidence 366777788889999999999999998743211 0 0112221 2246777888888888888776544
Q ss_pred cccccccCCCceeeeEEEEeeCCCEEEEeeC------CCcEEEEECCCCceeEEecCC----------------------
Q 008820 330 PLKKWNEEKDWRYSGIHALTTSGRYLYTGSG------DRTIKAWSLLDGTLSCTMSGH---------------------- 381 (552)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~------dg~i~iwd~~~~~~~~~~~~h---------------------- 381 (552)
.............. ..-.- .+..++.+.. .|.|..+|.++|+.+.++..-
T Consensus 142 ~~~~~~~~~~~~~~-~~p~v-~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~ 219 (560)
T d1kv9a2 142 SQQTTDPAKPYSIT-GAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG 219 (560)
T ss_dssp EEECSCTTSSCBCC-SCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred ccCccCcccceeee-eeeee-ecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccc
Confidence 33321111110000 00011 2234444432 367999999999999987421
Q ss_pred --------CCCe-EEEEEe--CCEEEEEeC-------------------CCcEEEEECCCCceeEEEecCCCCce-----
Q 008820 382 --------KSAV-STLAVC--NGVLYSGSR-------------------DGTIRLWSLSDHSLLTVLEEDSSGAV----- 426 (552)
Q Consensus 382 --------~~~v-~~l~~~--~~~l~s~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~~~----- 426 (552)
...+ ..+++. .++++.+.. ...|...|+++++....++..+....
T Consensus 220 ~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~ 299 (560)
T d1kv9a2 220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT 299 (560)
T ss_dssp SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred cccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEecccccccccccc
Confidence 1111 123444 334443221 34678889999999887765432211
Q ss_pred --EEEEEEcCCC---CEEEEEECCCcEEEEeCC--cceeeeec-------------------------------------
Q 008820 427 --SSVLSLTAVQ---HTLVVSHESGSIKVWRND--KFMKSMQT------------------------------------- 462 (552)
Q Consensus 427 --~~~~~~s~~~---~~l~~g~~dg~i~iwd~~--~~~~~~~~------------------------------------- 462 (552)
.....+..++ ..++.+..+|.++++|.. +++.....
T Consensus 300 ~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~G 379 (560)
T d1kv9a2 300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFG 379 (560)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTC
T ss_pred ceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeecccc
Confidence 1112333344 356678889999999843 22211100
Q ss_pred -ccceEEEEEecCCEEEEEeC------------------------------------CCeEEEEecCCCeeeeeeccCCC
Q 008820 463 -HKGSVFAVFLEGKWLFTGGW------------------------------------DKTVSVQELAGDEFEEDVIPTGA 505 (552)
Q Consensus 463 -h~~~v~~v~~~~~~l~sgs~------------------------------------dg~i~iwd~~~~~~~~~~~~~~~ 505 (552)
+.-.-.+..++...++.... .|.|.-||+.+++..........
T Consensus 380 g~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~ 459 (560)
T d1kv9a2 380 AHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH 459 (560)
T ss_dssp SSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS
T ss_pred ccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCC
Confidence 00001122233333333221 25688899999988876554322
Q ss_pred cccCcceEEEEEeCCeEEEEeCCCeEEEEEecCCcceeEEEec
Q 008820 506 IPCGSVITALLYWQGKLFVGCADRTVKIALCNRQIPEIFSLLL 548 (552)
Q Consensus 506 ~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~~~~~~~~~~~g 548 (552)
.. + -.++..++.+++|+.||.++.+|.+ +++++.++.-
T Consensus 460 ~~--g--g~l~TagglVF~G~~dg~l~A~Da~-tGe~LW~~~l 497 (560)
T d1kv9a2 460 WN--G--GTLSTAGNLVFQGTAAGQMHAYSAD-KGEALWQFEA 497 (560)
T ss_dssp CC--C--CEEEETTTEEEEECTTSEEEEEETT-TCCEEEEEEC
T ss_pred CC--C--ceeEECCCEEEEECCCCcEEEEECC-CCcEeEEEEC
Confidence 11 1 1244557888899999999999998 7888877653
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.63 E-value=0.016 Score=57.45 Aligned_cols=278 Identities=10% Similarity=0.049 Sum_probs=153.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCC----------CCe-EEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcc
Q 008820 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHD----------HKV-MAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEP 330 (552)
Q Consensus 262 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~----------~~v-~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 330 (552)
+..++.++.++.|.-+|.++|+.+.++.... ..+ ..+.+.. ..++.++.|+.+...|..+++....
T Consensus 77 ~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~v~~~t~~g~l~alda~tG~~~W~ 153 (573)
T d1kb0a2 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWK---GKVYVGAWDGRLIALDAATGKEVWH 153 (573)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEET---TEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEEC---CcEEEEecccceeeeccccccceec
Confidence 6677788889999999999999999875321 011 1222321 2456777888888888887765433
Q ss_pred ccccccCCCceeeeEEEEeeCCCEEEEeeC------CCcEEEEECCCCceeEEecCCC----------------------
Q 008820 331 LKKWNEEKDWRYSGIHALTTSGRYLYTGSG------DRTIKAWSLLDGTLSCTMSGHK---------------------- 382 (552)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~------dg~i~iwd~~~~~~~~~~~~h~---------------------- 382 (552)
................... .+..+++++. .|.|+.+|.++|+.+..+....
T Consensus 154 ~~~~~~~~~~~~~~~~p~v-~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~ 232 (573)
T d1kb0a2 154 QNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (573)
T ss_dssp EETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred ccCccCCcceEEeecceEE-EeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCC
Confidence 3222111110000000011 2344555543 4689999999999998863211
Q ss_pred ---------CCe-EEEEEe--CCEEEEEeC-------------------CCcEEEEECCCCceeEEEecCCCCc------
Q 008820 383 ---------SAV-STLAVC--NGVLYSGSR-------------------DGTIRLWSLSDHSLLTVLEEDSSGA------ 425 (552)
Q Consensus 383 ---------~~v-~~l~~~--~~~l~s~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~~------ 425 (552)
..+ ...++. .+.++.+.. ...|...|+++++....++..+...
T Consensus 233 ~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~ 312 (573)
T d1kb0a2 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST 312 (573)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred CceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCccccccccc
Confidence 111 123444 234443321 2357788889998887766432111
Q ss_pred -eEEEEEEcCCC---CEEEEEECCCcEEEEeCC--cceeeeec-------------------------------------
Q 008820 426 -VSSVLSLTAVQ---HTLVVSHESGSIKVWRND--KFMKSMQT------------------------------------- 462 (552)
Q Consensus 426 -~~~~~~~s~~~---~~l~~g~~dg~i~iwd~~--~~~~~~~~------------------------------------- 462 (552)
.........++ ..++.++.+|.++++|.. +.+.....
T Consensus 313 ~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg 392 (573)
T d1kb0a2 313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA 392 (573)
T ss_dssp SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred ceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCC
Confidence 01111222333 356777889999999843 22211100
Q ss_pred ccceEEEEEecCCEEEEEeCC-------------------------------------------CeEEEEecCCCeeeee
Q 008820 463 HKGSVFAVFLEGKWLFTGGWD-------------------------------------------KTVSVQELAGDEFEED 499 (552)
Q Consensus 463 h~~~v~~v~~~~~~l~sgs~d-------------------------------------------g~i~iwd~~~~~~~~~ 499 (552)
+.-.-.++.++...++....+ |.+.-||+.+++....
T Consensus 393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~ 472 (573)
T d1kb0a2 393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS 472 (573)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred ccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEee
Confidence 000001222333333332211 4577788888887776
Q ss_pred eccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEecCCcceeEEEec
Q 008820 500 VIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCNRQIPEIFSLLL 548 (552)
Q Consensus 500 ~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~~~~~~~~~~~g 548 (552)
........ -..++..++.+++|+.||.++.+|.+ +++++.++.-
T Consensus 473 ~~~~~p~~----gg~lstagglVF~G~~dg~l~A~Da~-TGe~LW~~~~ 516 (573)
T d1kb0a2 473 VEHVSPWN----GGTLTTAGNVVFQGTADGRLVAYHAA-TGEKLWEAPT 516 (573)
T ss_dssp EEESSSCC----CCEEEETTTEEEEECTTSEEEEEETT-TCCEEEEEEC
T ss_pred ecCCCCCC----CceEEEcCCEEEEECCCCeEEEEECC-CCcEeEEEEC
Confidence 54432211 12345557888899999999999998 7888877653
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.49 E-value=0.032 Score=49.98 Aligned_cols=204 Identities=10% Similarity=0.016 Sum_probs=116.5
Q ss_pred EEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeE
Q 008820 297 AVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSC 376 (552)
Q Consensus 297 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~ 376 (552)
+..|.+.++.+..+=-..+.|.-||..++... .+.... . ....++..++++++ ++.+ .+..+|..+++...
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~----~~~~~~--~-~~~i~~~~dg~l~v-a~~~-gl~~~d~~tg~~~~ 92 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT----VHALPF--M-GSALAKISDSKQLI-ASDD-GLFLRDTATGVLTL 92 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE----EEECSS--C-EEEEEEEETTEEEE-EETT-EEEEEETTTCCEEE
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEE----EEECCC--C-cEEEEEecCCCEEE-EEeC-ccEEeecccceeeE
Confidence 45566666656565556677888887654321 111111 1 12335556665555 4555 48999999887654
Q ss_pred EecC----CCCCeEEEEEe-CCEEEEEeC-----CCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEE-ECC
Q 008820 377 TMSG----HKSAVSTLAVC-NGVLYSGSR-----DGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVS-HES 445 (552)
Q Consensus 377 ~~~~----h~~~v~~l~~~-~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~d 445 (552)
.... ....++.+.+. ++.+..++. .+.-.+|.+..++........ .... -++++++++.++.. +..
T Consensus 93 l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~--~~~N-g~~~s~d~~~l~~~dt~~ 169 (295)
T d2ghsa1 93 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI--SIPN-SICFSPDGTTGYFVDTKV 169 (295)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE--SSEE-EEEECTTSCEEEEEETTT
T ss_pred EeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc--CCcc-eeeecCCCceEEEeeccc
Confidence 3321 12246777777 454544442 234556666666654444322 2223 36899999876555 457
Q ss_pred CcEEEEeCCcc-------ee---eeecccceEEEEEe--cCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceE
Q 008820 446 GSIKVWRNDKF-------MK---SMQTHKGSVFAVFL--EGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVIT 513 (552)
Q Consensus 446 g~i~iwd~~~~-------~~---~~~~h~~~v~~v~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 513 (552)
+.|+.|+.... .. ...+..+....+.. +|++.++.-..+.|..||..+. ........ ...++
T Consensus 170 ~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~-~~~~i~lP-----~~~~T 243 (295)
T d2ghsa1 170 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGN-HIARYEVP-----GKQTT 243 (295)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCC-EEEEEECS-----CSBEE
T ss_pred ceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCc-EeeEecCC-----CCceE
Confidence 78888874311 11 11223344555555 7777777667889999997544 44443332 23589
Q ss_pred EEEEe
Q 008820 514 ALLYW 518 (552)
Q Consensus 514 ~l~~~ 518 (552)
+++|.
T Consensus 244 ~~~FG 248 (295)
T d2ghsa1 244 CPAFI 248 (295)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99997
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.41 E-value=0.072 Score=52.40 Aligned_cols=272 Identities=11% Similarity=0.053 Sum_probs=150.8
Q ss_pred cceEEEeeCCCeEEEEEeecCcc-----------ceEEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCC----e
Q 008820 231 VKDLVNGLSKGNVKFKDLQGHRD-----------CVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHK----V 295 (552)
Q Consensus 231 ~~~~~~~~~~~~~~~~~l~~H~~-----------~V~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~----v 295 (552)
...++.-.......+|++..+.. .-..++..+..++.+..|+.|...|..+|+.+.....+... +
T Consensus 75 ~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~ 154 (560)
T d1kv9a2 75 WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSI 154 (560)
T ss_dssp GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBC
T ss_pred CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceee
Confidence 34444444455566787642211 11234444778899999999999999999999887643210 1
Q ss_pred EEEEEecCCCCEEEEEc------CCCcEEEEeCCCCCCCccccccccCCC--------------------------ceee
Q 008820 296 MAVVYVDEDQPLCISGD------SGGGIFVWSFSFPLGHEPLKKWNEEKD--------------------------WRYS 343 (552)
Q Consensus 296 ~~v~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------------------~~~~ 343 (552)
+..-..- +. .++.+. ..|.|.-+|.++++............. ...-
T Consensus 155 ~~~p~v~-~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W 232 (560)
T d1kv9a2 155 TGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVW 232 (560)
T ss_dssp CSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCC
T ss_pred eeeeeee-cC-cccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcc
Confidence 0000001 12 233332 236788888888776554433221110 0011
Q ss_pred eEEEEeeCCCEEEEeeC-------------------CCcEEEEECCCCceeEEecCCCCCe-----------EEEEEeCC
Q 008820 344 GIHALTTSGRYLYTGSG-------------------DRTIKAWSLLDGTLSCTMSGHKSAV-----------STLAVCNG 393 (552)
Q Consensus 344 ~~~~~~~~~~~l~sgs~-------------------dg~i~iwd~~~~~~~~~~~~h~~~v-----------~~l~~~~~ 393 (552)
...++.+..+.++.+.. ...|...|+++++.+..++.....+ ..+...++
T Consensus 233 ~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~ 312 (560)
T d1kv9a2 233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK 312 (560)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred cccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCc
Confidence 12345555554444321 2457788999999988775432211 12222222
Q ss_pred ---EEEEEeCCCcEEEEECCCCceeEEEecCCCCc----------------------------------eEEEEEEcCCC
Q 008820 394 ---VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGA----------------------------------VSSVLSLTAVQ 436 (552)
Q Consensus 394 ---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~s~~~ 436 (552)
.++.+..+|.+.++|..+++.+.......... ...-.+++|+.
T Consensus 313 ~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~ 392 (560)
T d1kv9a2 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (560)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred eeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCC
Confidence 67788899999999999999876654321100 00113566777
Q ss_pred CEEEEEECCC------------------------------------cEEEEeCCcceeeeecc-cceE--EEEEecCCEE
Q 008820 437 HTLVVSHESG------------------------------------SIKVWRNDKFMKSMQTH-KGSV--FAVFLEGKWL 477 (552)
Q Consensus 437 ~~l~~g~~dg------------------------------------~i~iwd~~~~~~~~~~h-~~~v--~~v~~~~~~l 477 (552)
.++++...+. .+.-||..+....++.. ..+. -.+.-.+.++
T Consensus 393 ~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglV 472 (560)
T d1kv9a2 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLV 472 (560)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEE
T ss_pred CeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEE
Confidence 7776655432 23333322211111100 0000 0123357788
Q ss_pred EEEeCCCeEEEEecCCCeeeeeeccCC
Q 008820 478 FTGGWDKTVSVQELAGDEFEEDVIPTG 504 (552)
Q Consensus 478 ~sgs~dg~i~iwd~~~~~~~~~~~~~~ 504 (552)
+.|+.||.++.+|.++++.........
T Consensus 473 F~G~~dg~l~A~Da~tGe~LW~~~l~~ 499 (560)
T d1kv9a2 473 FQGTAAGQMHAYSADKGEALWQFEAQS 499 (560)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred EEECCCCcEEEEECCCCcEeEEEECCC
Confidence 899999999999999999988776654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.41 E-value=0.035 Score=48.75 Aligned_cols=229 Identities=7% Similarity=0.030 Sum_probs=117.3
Q ss_pred cCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCC-----cEEEEeCCCCCCCccccccc
Q 008820 261 GGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGG-----GIFVWSFSFPLGHEPLKKWN 335 (552)
Q Consensus 261 s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~ 335 (552)
+|+.++-.+ ++.|.+.|+.+++.. .+..+.+.+...+|+|++..++++...++ .|.+++...+..........
T Consensus 11 ~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~ 88 (281)
T d1k32a2 11 HGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSG 88 (281)
T ss_dssp ETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCE
T ss_pred CCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCC
Confidence 366766654 456888899888764 56667788899999999987776654443 36666665543322211110
Q ss_pred cC-CCceeeeEEEEeeCCCEEEEeeCC------CcEEEEECCCCceeEEecCCCCCeEEEEEeCC--EEEEEeCCC----
Q 008820 336 EE-KDWRYSGIHALTTSGRYLYTGSGD------RTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNG--VLYSGSRDG---- 402 (552)
Q Consensus 336 ~~-~~~~~~~~~~~~~~~~~l~sgs~d------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~~~dg---- 402 (552)
.. ..........++++++.++..... ..+...+...+..... +........+.++ .++....+.
T Consensus 89 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (281)
T d1k32a2 89 KSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRVIGRNTFELPHWK 165 (281)
T ss_dssp EEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEEEEESCSCCTTST
T ss_pred CccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccceeeecCCCeEEEeeccccceee
Confidence 00 001122345788999977764322 2345555554443322 2222333334433 222222111
Q ss_pred -------cEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCC--cEEEEeCCc-ceeeee-cccceEEEEE
Q 008820 403 -------TIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG--SIKVWRNDK-FMKSMQ-THKGSVFAVF 471 (552)
Q Consensus 403 -------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg--~i~iwd~~~-~~~~~~-~h~~~v~~v~ 471 (552)
................... ..... ..++++ ..+.....++ .|+++|+.. ..+.+. .....+..++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~-~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~~~~S 241 (281)
T d1k32a2 166 GYRGGTRGKIWIEVNSGAFKKIVDMS--THVSS-PVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLN 241 (281)
T ss_dssp TCCSTTCCEEEEEEETTEEEEEECCS--SCCEE-EEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEE
T ss_pred eeccCCcceeeeeccccceeeccCCc--cccce-eeeecc-ccceecccccccceEEEeCCCCceEEeecCCCcccccCc
Confidence 1112222222222222111 11121 233333 2333333333 466667542 333333 3344566788
Q ss_pred ecCCEEEEEeCCCeEEEEecCCCeeeee
Q 008820 472 LEGKWLFTGGWDKTVSVQELAGDEFEED 499 (552)
Q Consensus 472 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~ 499 (552)
+||+.|+... ++.|+++|+.+++....
T Consensus 242 pDG~~I~f~~-~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 242 TDGRRILFSK-GGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp ESSSCEEEEE-TTEEEEECTTTCCEEEC
T ss_pred CCCCEEEEEe-CCEEEEEECCCCCEEEe
Confidence 8999887644 68899999998866544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.055 Score=51.90 Aligned_cols=290 Identities=10% Similarity=0.023 Sum_probs=144.3
Q ss_pred ceEEEEEc--CCEEEEE---------eCCCcEEEEeCCCCeEEEEEe--CCCCCeEEEEEecCCCCEEEEEcCCCcEEEE
Q 008820 254 CVTGLAVG--GGFLFSS---------SFDKSIHVWSLKDFSHVHTFK--GHDHKVMAVVYVDEDQPLCISGDSGGGIFVW 320 (552)
Q Consensus 254 ~V~~l~~s--~~~l~s~---------s~dg~I~iwd~~~~~~~~~~~--~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vw 320 (552)
.+....++ +++++.+ +..+.+.++|+.++....... .....+....|+|++..++.+. ++.|.+.
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~--~~nl~~~ 139 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYC 139 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEE
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe--cceEEEE
Confidence 44455566 6666554 335678899999877543322 2334556688999998876654 5678888
Q ss_pred eCCCCCCCccccccccC------CC-------ceeeeEEEEeeCCCEEEEeeC-CCc-----------------------
Q 008820 321 SFSFPLGHEPLKKWNEE------KD-------WRYSGIHALTTSGRYLYTGSG-DRT----------------------- 363 (552)
Q Consensus 321 d~~~~~~~~~~~~~~~~------~~-------~~~~~~~~~~~~~~~l~sgs~-dg~----------------------- 363 (552)
+...+...+....-... .. ........++|||++|+.... +..
T Consensus 140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp 219 (465)
T d1xfda1 140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (465)
T ss_dssp SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecc
Confidence 77654332222111000 00 011124568999998887642 222
Q ss_pred ----------EEEEECCCCceeEEec------CCCCCeEEEEEe-CCEEEEE--eCC---CcEEEEECCCCceeEEEecC
Q 008820 364 ----------IKAWSLLDGTLSCTMS------GHKSAVSTLAVC-NGVLYSG--SRD---GTIRLWSLSDHSLLTVLEED 421 (552)
Q Consensus 364 ----------i~iwd~~~~~~~~~~~------~h~~~v~~l~~~-~~~l~s~--~~d---g~i~iwd~~~~~~~~~~~~~ 421 (552)
+.++|+.++....... ....-+..+.|. ++.++.. ..+ ..+.++|..+++....+...
T Consensus 220 ~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~ 299 (465)
T d1xfda1 220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE 299 (465)
T ss_dssp BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred ccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc
Confidence 3444443332221111 111235667787 4433332 222 25888999999876655443
Q ss_pred CCCce---EEEEEEcCCCCEEE---EEECCC--cEEEEeC--------CcceeeeecccceEEEE-Ee--cCCEEE-EEe
Q 008820 422 SSGAV---SSVLSLTAVQHTLV---VSHESG--SIKVWRN--------DKFMKSMQTHKGSVFAV-FL--EGKWLF-TGG 481 (552)
Q Consensus 422 ~~~~~---~~~~~~s~~~~~l~---~g~~dg--~i~iwd~--------~~~~~~~~~h~~~v~~v-~~--~~~~l~-sgs 481 (552)
..+.+ .....|+++|+.++ ....+| .++..++ ++....+....-.|..+ .+ +++.++ ++.
T Consensus 300 ~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~ 379 (465)
T d1xfda1 300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLST 379 (465)
T ss_dssp CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEES
T ss_pred CCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEe
Confidence 22211 12247888887432 222233 3333321 12233444334444443 23 455554 554
Q ss_pred CCC--eEEEEec--CCCeeeeeeccCCCcccCcceEEEEEeCC--eEEEE-e--CCCeEEEEEecCCcceeEEEec
Q 008820 482 WDK--TVSVQEL--AGDEFEEDVIPTGAIPCGSVITALLYWQG--KLFVG-C--ADRTVKIALCNRQIPEIFSLLL 548 (552)
Q Consensus 482 ~dg--~i~iwd~--~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~s~-s--~Dg~v~iw~~~~~~~~~~~~~g 548 (552)
.++ .-++|.+ .+......+... ........++.|+++ .++.. + .--.+.+++.. ++..+..+..
T Consensus 380 ~~~p~~~hly~v~l~g~~~~~~lt~~--~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~-~~~~~~~Le~ 452 (465)
T d1xfda1 380 EDLPRRRQLYSANTVGNFNRQCLSCD--LVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTT-DKKKMFDLET 452 (465)
T ss_dssp SSCTTCCEEEEECSSTTCCCBCSSTT--SSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETT-TCCEEEEEEC
T ss_pred CCCCCceEEEEEECCCCCcceeeccc--cCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECC-CCCEEEEEcC
Confidence 432 3345544 433222211111 112344668888864 34322 2 22456777754 5666666543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.12 E-value=0.16 Score=50.27 Aligned_cols=155 Identities=14% Similarity=0.121 Sum_probs=93.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCC----CeEE-EEEecCCCCEEEEEc------CCCcEEEEeCCCCCCCcc
Q 008820 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH----KVMA-VVYVDEDQPLCISGD------SGGGIFVWSFSFPLGHEP 330 (552)
Q Consensus 262 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~----~v~~-v~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~ 330 (552)
+.+++.++.|+.|.-.|.++|+.+..+..... .+++ -.+. ++ .++.+. ..|.|+-+|+.+++....
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~--~~-~vivg~~~~e~~~~G~v~A~Da~TG~~~W~ 197 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWR 197 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEE--CC-eEEEeeccccccccCceEEEECCCCcEEEE
Confidence 34788999999999999999999988853211 1111 1111 22 344443 248899999998876543
Q ss_pred cccccc-----------------------------C----CCceeeeEEEEeeCCCEEEEeeC----------------C
Q 008820 331 LKKWNE-----------------------------E----KDWRYSGIHALTTSGRYLYTGSG----------------D 361 (552)
Q Consensus 331 ~~~~~~-----------------------------~----~~~~~~~~~~~~~~~~~l~sgs~----------------d 361 (552)
...... . .....-...++.+..+.++.+.. .
T Consensus 198 ~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys 277 (596)
T d1w6sa_ 198 AYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWT 277 (596)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTS
T ss_pred eeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccc
Confidence 322110 0 00001112244555555555433 2
Q ss_pred CcEEEEECCCCceeEEecCCC---------CCeEEEEEe--CC----EEEEEeCCCcEEEEECCCCceeEEEe
Q 008820 362 RTIKAWSLLDGTLSCTMSGHK---------SAVSTLAVC--NG----VLYSGSRDGTIRLWSLSDHSLLTVLE 419 (552)
Q Consensus 362 g~i~iwd~~~~~~~~~~~~h~---------~~v~~l~~~--~~----~l~s~~~dg~i~iwd~~~~~~~~~~~ 419 (552)
..|...|+++|+.+..++... .....+... ++ .++....+|.+.++|..+|+.+....
T Consensus 278 ~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~ 350 (596)
T d1w6sa_ 278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (596)
T ss_dssp SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecc
Confidence 458889999999998775321 122222221 22 67888999999999999999876544
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.92 E-value=0.22 Score=48.86 Aligned_cols=271 Identities=10% Similarity=0.055 Sum_probs=150.1
Q ss_pred cceEEEeeCCCeEEEEEeecCc----------cce-EEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCC---CeE
Q 008820 231 VKDLVNGLSKGNVKFKDLQGHR----------DCV-TGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDH---KVM 296 (552)
Q Consensus 231 ~~~~~~~~~~~~~~~~~l~~H~----------~~V-~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~---~v~ 296 (552)
...++.-.......+|.+.... ..+ ..+.+.+..++.++.|+.+...|.++|+.+........ .+.
T Consensus 86 ~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~ 165 (573)
T d1kb0a2 86 WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLT 165 (573)
T ss_dssp GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCB
T ss_pred CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEecccceeeeccccccceecccCccCCcceEE
Confidence 3444444455566788864221 111 23455577788889999999999999999887653211 111
Q ss_pred ----EEEEecCCCCEEEEEc------CCCcEEEEeCCCCCCCccccccccCCC---------------------------
Q 008820 297 ----AVVYVDEDQPLCISGD------SGGGIFVWSFSFPLGHEPLKKWNEEKD--------------------------- 339 (552)
Q Consensus 297 ----~v~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------------------- 339 (552)
-+.+ ++ .++.++ ..|.|+.+|..+++.............
T Consensus 166 ~~~~p~v~---~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G 241 (573)
T d1kb0a2 166 ITGAPRVF---KG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGG 241 (573)
T ss_dssp CCSCCEEE---TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEE
T ss_pred eecceEEE---ec-cEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCceeecCCC
Confidence 0111 22 334443 246799999988765443322211100
Q ss_pred ceeeeEEEEeeCCCEEEEeeC-------------------CCcEEEEECCCCceeEEecCCCC---------CeEEEEEe
Q 008820 340 WRYSGIHALTTSGRYLYTGSG-------------------DRTIKAWSLLDGTLSCTMSGHKS---------AVSTLAVC 391 (552)
Q Consensus 340 ~~~~~~~~~~~~~~~l~sgs~-------------------dg~i~iwd~~~~~~~~~~~~h~~---------~v~~l~~~ 391 (552)
...-...++.+....++.+.. ...|...|.++++....++.... +.......
T Consensus 242 ~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~ 321 (573)
T d1kb0a2 242 GTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIK 321 (573)
T ss_dssp CCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEE
T ss_pred CcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccceeeeccee
Confidence 000012244444444443321 13577788888988877643211 11222222
Q ss_pred -CC----EEEEEeCCCcEEEEECCCCceeEEEecCCCC---------------------------------ceEEEEEEc
Q 008820 392 -NG----VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSG---------------------------------AVSSVLSLT 433 (552)
Q Consensus 392 -~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~s 433 (552)
++ .++.++.+|.+.++|..+|+.+......... ....-.+++
T Consensus 322 ~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~d 401 (573)
T d1kb0a2 322 IAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFN 401 (573)
T ss_dssp ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEE
T ss_pred cCCCceeeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccC
Confidence 22 6788889999999999999988765432110 001113677
Q ss_pred CCCCEEEEEECCCcEEEE-------------------------------------------eCCcceeeeeccc-ceE--
Q 008820 434 AVQHTLVVSHESGSIKVW-------------------------------------------RNDKFMKSMQTHK-GSV-- 467 (552)
Q Consensus 434 ~~~~~l~~g~~dg~i~iw-------------------------------------------d~~~~~~~~~~h~-~~v-- 467 (552)
|+...+++...+....++ |..+....++... .+.
T Consensus 402 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~g 481 (573)
T d1kb0a2 402 PQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNG 481 (573)
T ss_dssp TTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCC
T ss_pred CCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEeeecCCCCCCC
Confidence 777777766555443333 2111111111000 000
Q ss_pred EEEEecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCC
Q 008820 468 FAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGA 505 (552)
Q Consensus 468 ~~v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~ 505 (552)
-.++..+.++++|+.||.++.+|.++++....+.....
T Consensus 482 g~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~ 519 (573)
T d1kb0a2 482 GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG 519 (573)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred ceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCC
Confidence 12333678888999999999999999999887766543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.70 E-value=0.048 Score=53.84 Aligned_cols=80 Identities=20% Similarity=0.183 Sum_probs=56.5
Q ss_pred CcEEEEECCCCceeEEecCCCCCeE-EEEEeCCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCC-EE
Q 008820 362 RTIKAWSLLDGTLSCTMSGHKSAVS-TLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQH-TL 439 (552)
Q Consensus 362 g~i~iwd~~~~~~~~~~~~h~~~v~-~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l 439 (552)
|.|..+|+++++.+.+...-..... .+...++++++|+.||.++.+|.++|+.+..+.......... +.+..+|+ ++
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P-~ty~~dGkqYi 522 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSP-MTYSFKGKQYI 522 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC-EEEEETTEEEE
T ss_pred ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecc-eEEEECCEEEE
Confidence 6799999999999987753222222 233347889999999999999999999999998764433333 45566776 44
Q ss_pred EEE
Q 008820 440 VVS 442 (552)
Q Consensus 440 ~~g 442 (552)
++.
T Consensus 523 ~v~ 525 (571)
T d2ad6a1 523 GSM 525 (571)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.54 E-value=0.21 Score=43.38 Aligned_cols=163 Identities=10% Similarity=0.017 Sum_probs=100.1
Q ss_pred cceEEEEEc--CCEEE-EEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEE--eCCCCCC
Q 008820 253 DCVTGLAVG--GGFLF-SSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVW--SFSFPLG 327 (552)
Q Consensus 253 ~~V~~l~~s--~~~l~-s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vw--d~~~~~~ 327 (552)
..+.+++++ ++.|+ +-...+.|.+.+++.......+...-.....++..|..+.++.+-...+..+|+ +++....
T Consensus 79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~ 158 (263)
T d1npea_ 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR 158 (263)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc
Confidence 467888887 55555 555677999999876544333344446789999999888777665443444455 4442221
Q ss_pred CccccccccCCCceeeeEEEEeeCCCEEEEe-eCCCcEEEEECCCCceeEEecCCCCCeEEEEEeCCEEEEE-eCCCcEE
Q 008820 328 HEPLKKWNEEKDWRYSGIHALTTSGRYLYTG-SGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNGVLYSG-SRDGTIR 405 (552)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~-~~dg~i~ 405 (552)
. .+. .... ....-.++.+.++.|+.+ ...+.|...|++.......+.+.. ...+|++.++.|+.. ...+.|.
T Consensus 159 ~-~i~--~~~~--~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~~~~lYwtd~~~~~I~ 232 (263)
T d1npea_ 159 R-ILA--QDNL--GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSYGKNLYYTDWKTNSVI 232 (263)
T ss_dssp E-EEE--CTTC--SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEETTEEEEEETTTTEEE
T ss_pred e-eee--eecc--cccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEECCEEEEEECCCCEEE
Confidence 1 111 1110 111234566666656544 566889999986555444444433 346888887766555 4678899
Q ss_pred EEECCCCceeEEEecC
Q 008820 406 LWSLSDHSLLTVLEED 421 (552)
Q Consensus 406 iwd~~~~~~~~~~~~~ 421 (552)
..|..+++.+..+...
T Consensus 233 ~~~~~~g~~~~~~~~~ 248 (263)
T d1npea_ 233 AMDLAISKEMDTFHPH 248 (263)
T ss_dssp EEETTTTEEEEEECCS
T ss_pred EEECCCCccceEECCC
Confidence 9999999887766543
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.51 E-value=0.022 Score=56.64 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=58.7
Q ss_pred CCcEEEEECCCCceeEEecCCCCCeE-EEEEeCCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCC-E
Q 008820 361 DRTIKAWSLLDGTLSCTMSGHKSAVS-TLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQH-T 438 (552)
Q Consensus 361 dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~ 438 (552)
.|.|.-+|+.+|+.+.....+..... .++..++++++|+.||.++.+|.++|+.+..+.......... +.+..+|+ +
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P-~ty~~~G~qY 543 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP-ITWEQDGEQY 543 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC-EEEEETTEEE
T ss_pred CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC-EEEEECCEEE
Confidence 47899999999999998864432222 233337788899999999999999999999998765433333 46677885 4
Q ss_pred EEEE
Q 008820 439 LVVS 442 (552)
Q Consensus 439 l~~g 442 (552)
+++.
T Consensus 544 v~i~ 547 (582)
T d1flga_ 544 LGVT 547 (582)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.41 E-value=0.074 Score=50.98 Aligned_cols=149 Identities=8% Similarity=0.053 Sum_probs=89.0
Q ss_pred EEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEee---------CCCcEEEEEC
Q 008820 299 VYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGS---------GDRTIKAWSL 369 (552)
Q Consensus 299 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs---------~dg~i~iwd~ 369 (552)
.|.+++. + +.-..+|.|.+||+.++.....+...... . ....-..++||+++++... ..+.+.++|+
T Consensus 23 ~W~~~~~-~-~~~~~~g~i~~~~~~~~~~~~l~~~~~~~-~-~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~ 98 (465)
T d1xfda1 23 KWISDTE-F-IYREQKGTVRLWNVETNTSTVLIEGKKIE-S-LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI 98 (465)
T ss_dssp CBSSSSC-B-CCCCSSSCEEEBCGGGCCCEEEECTTTTT-T-TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred EEeCCCc-E-EEEeCCCcEEEEECCCCCEEEEEcCcccc-c-cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEc
Confidence 5766554 3 33456789999999877543222211111 0 1112347899999777653 3577899999
Q ss_pred CCCceeEEe--cCCCCCeEEEEEe-CC-EEEEEeCCCcEEEEECCCCceeEEEecCCCCce----------------EEE
Q 008820 370 LDGTLSCTM--SGHKSAVSTLAVC-NG-VLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAV----------------SSV 429 (552)
Q Consensus 370 ~~~~~~~~~--~~h~~~v~~l~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------------~~~ 429 (552)
.+++..... ......+....|+ ++ .++-.. ++.|.+.+..++...+.......+.+ ...
T Consensus 99 ~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a 177 (465)
T d1xfda1 99 PHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA 177 (465)
T ss_dssp SSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred cCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccce
Confidence 988754332 2233445567788 33 555443 67888888877766555433222211 234
Q ss_pred EEEcCCCCEEEEEEC-CCcEEEEe
Q 008820 430 LSLTAVQHTLVVSHE-SGSIKVWR 452 (552)
Q Consensus 430 ~~~s~~~~~l~~g~~-dg~i~iwd 452 (552)
+.|||||+.|+.... +..|..+.
T Consensus 178 ~~WSPDgk~iaf~~~D~s~V~~~~ 201 (465)
T d1xfda1 178 HWWSPDGTRLAYAAINDSRVPIME 201 (465)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEE
T ss_pred EEECCCCCeEEEEEecccccceee
Confidence 689999999998753 34444443
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.41 E-value=0.26 Score=42.94 Aligned_cols=216 Identities=11% Similarity=0.126 Sum_probs=131.1
Q ss_pred CcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC
Q 008820 315 GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG 393 (552)
Q Consensus 315 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~ 393 (552)
..+.+.|+..+... .+.... ....-++|..+.|+.-+ ..++.++|+++.+.++.+.-. .+|.--.|- ++
T Consensus 45 ~~VvIidl~n~~~~--~Rrpi~------AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~ 114 (327)
T d1utca2 45 AQVVIIDMNDPSNP--IRRPIS------ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN 114 (327)
T ss_dssp EEEEEEETTSTTSC--EEEECC------CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEESSSS
T ss_pred ceEEEEECCCCCcc--eecccc------hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC-CCcEEEEecCCC
Confidence 46777777654422 111111 11234678888777766 468999999999998887743 456556666 55
Q ss_pred EEEEEeCCCcEEEEECCC-CceeEEEecCCC---CceEEEEEEcCCCCEEEEEE-------CCCcEEEEeCC-cceeeee
Q 008820 394 VLYSGSRDGTIRLWSLSD-HSLLTVLEEDSS---GAVSSVLSLTAVQHTLVVSH-------ESGSIKVWRND-KFMKSMQ 461 (552)
Q Consensus 394 ~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~---~~~~~~~~~s~~~~~l~~g~-------~dg~i~iwd~~-~~~~~~~ 461 (552)
.|+..+ +..|+-|++.. ..+.+.+..+.. ..+.. ...+++.++++..+ -.|.+.+|... +..+.++
T Consensus 115 ~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIIn-Y~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ie 192 (327)
T d1utca2 115 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIIN-YRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIE 192 (327)
T ss_dssp EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEE-EEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEEC
T ss_pred EEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEE-EEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcccc
Confidence 666554 56799999954 245666654432 22222 45677888776543 23678899865 5677889
Q ss_pred cccceEEEEEecCC-----EEEEEe---CCCeEEEEecCCCee---e-----eeeccCCCcccCcceEEEEEeC--CeEE
Q 008820 462 THKGSVFAVFLEGK-----WLFTGG---WDKTVSVQELAGDEF---E-----EDVIPTGAIPCGSVITALLYWQ--GKLF 523 (552)
Q Consensus 462 ~h~~~v~~v~~~~~-----~l~sgs---~dg~i~iwd~~~~~~---~-----~~~~~~~~~~~~~~v~~l~~~~--~~l~ 523 (552)
+|.+.-..+..+|. .++.+. ..+.+++-++..... . ........ ....--.++..++ +.++
T Consensus 193 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppe-a~~DFPvamqvs~kygiiy 271 (327)
T d1utca2 193 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE-AQNDFPVAMQISEKHDVVF 271 (327)
T ss_dssp CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTT-CTTCCEEEEEEETTTTEEE
T ss_pred ceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCcc-ccCCcEEEEEeeccCCEEE
Confidence 99887777655332 333332 236888988864211 0 01111111 1133345566665 5588
Q ss_pred EEeCCCeEEEEEecCCcceeE
Q 008820 524 VGCADRTVKIALCNRQIPEIF 544 (552)
Q Consensus 524 s~s~Dg~v~iw~~~~~~~~~~ 544 (552)
.-+.-|.|+++|+. ++..++
T Consensus 272 viTK~G~i~lyDle-Tgt~i~ 291 (327)
T d1utca2 272 LITKYGYIHLYDLE-TGTCIY 291 (327)
T ss_dssp EEETTSEEEEEETT-TCCEEE
T ss_pred EEecCcEEEEEEcc-cccEEE
Confidence 99999999999998 454444
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.05 E-value=0.53 Score=43.05 Aligned_cols=136 Identities=10% Similarity=0.048 Sum_probs=73.4
Q ss_pred EEEEeCCCCeEE--EEE-eCCCCCeEEEEEecCCCCEEEEEcCC-CcEEEEeCCCCCCCccccccccCCCceeeeEEEEe
Q 008820 274 IHVWSLKDFSHV--HTF-KGHDHKVMAVVYVDEDQPLCISGDSG-GGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALT 349 (552)
Q Consensus 274 I~iwd~~~~~~~--~~~-~~h~~~v~~v~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (552)
+.+||..+++-. ... ..|.......++.+++. +++.|+.+ ..+.+||..+..... ........ .....+..
T Consensus 54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~~~r---~~~~~~~~ 128 (387)
T d1k3ia3 54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVAR---GYQSSATM 128 (387)
T ss_dssp EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGGGTEEEE-CCCCSSCC---SSCEEEEC
T ss_pred EEEEECCCCcEeecCCCCCCcccceeEEEEecCCc-EEEeecCCCcceeEecCccCcccc-cccccccc---cccceeee
Confidence 678999876532 222 23333344556777654 66666544 689999987653321 11111111 11233556
Q ss_pred eCCCEEEEeeCC------CcEEEEECCCCceeEEec---------CCC------CCeEEEEEe-CCEEEEEeCCCcEEEE
Q 008820 350 TSGRYLYTGSGD------RTIKAWSLLDGTLSCTMS---------GHK------SAVSTLAVC-NGVLYSGSRDGTIRLW 407 (552)
Q Consensus 350 ~~~~~l~sgs~d------g~i~iwd~~~~~~~~~~~---------~h~------~~v~~l~~~-~~~l~s~~~dg~i~iw 407 (552)
.+++.++.|+.+ ..+.+||..+.+-...-. .+. .....+... +..++.++.++.+.++
T Consensus 129 ~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~ 208 (387)
T d1k3ia3 129 SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYY 208 (387)
T ss_dssp TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEE
T ss_pred cCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEec
Confidence 788888888653 368999988764322110 000 111111111 3356666677777777
Q ss_pred ECCCCce
Q 008820 408 SLSDHSL 414 (552)
Q Consensus 408 d~~~~~~ 414 (552)
|..+...
T Consensus 209 ~~~~~~~ 215 (387)
T d1k3ia3 209 TSGSGDV 215 (387)
T ss_dssp CSTTCEE
T ss_pred CcccCcE
Confidence 7776653
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.01 E-value=0.81 Score=44.77 Aligned_cols=61 Identities=10% Similarity=-0.007 Sum_probs=44.1
Q ss_pred CCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEecCCcceeEEEec
Q 008820 483 DKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCNRQIPEIFSLLL 548 (552)
Q Consensus 483 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~~~~~~~~~~~g 548 (552)
.|.|.-+|+.+++........... .+. .++..++.+++|+.||.++.+|.+ +++++.++.-
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~p~--~~g--~lstagglVF~Gt~dg~l~A~Da~-TGe~LW~~~~ 525 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHLPL--WAG--VLATAGNLVFTGTGDGYFKAFDAK-SGKELWKFQT 525 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCC--CSC--CEEETTTEEEEECTTSEEEEEETT-TCCEEEEEEC
T ss_pred CCeEEEEcCCCCcEEeecCCCCCC--ccc--eeEEcCCeEEEeCCCCeEEEEECC-CCcEeEEEEC
Confidence 478899999999888776543221 111 234457788899999999999998 7888877653
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.30 E-value=0.78 Score=39.64 Aligned_cols=228 Identities=11% Similarity=0.008 Sum_probs=130.1
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceee
Q 008820 264 FLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYS 343 (552)
Q Consensus 264 ~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 343 (552)
+|+.+... .|+-.++++......+. ....+.++.|.+..+.+..+=..++.|.-.+++...................
T Consensus 3 fLl~s~~~-~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p- 79 (266)
T d1ijqa1 3 YLFFTNRH-EVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP- 79 (266)
T ss_dssp EEEEECBS-SEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC-
T ss_pred EEEEECCC-eEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCc-
Confidence 34444433 58888988765544444 4556789999887777777666777787777654322111111111111111
Q ss_pred eEEEEeeCCCEEEE-eeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEe--CCCcEEEEECCCCceeEEE
Q 008820 344 GIHALTTSGRYLYT-GSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGS--RDGTIRLWSLSDHSLLTVL 418 (552)
Q Consensus 344 ~~~~~~~~~~~l~s-gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~--~dg~i~iwd~~~~~~~~~~ 418 (552)
.-.++.+.++.|+. -...+.|.+.++........+.........++++ .++++... ..+.|.-.++.........
T Consensus 80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~ 159 (266)
T d1ijqa1 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 159 (266)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred ceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccc
Confidence 12466665664444 4566789999997666555555555667899988 45555443 3456777777544433333
Q ss_pred ecCCCCceEEEEEEcCCCCEEEEE-ECCCcEEEEeCCc-c-eeeeec--ccceEEEEEecCCEEEEEe-CCCeEEEEecC
Q 008820 419 EEDSSGAVSSVLSLTAVQHTLVVS-HESGSIKVWRNDK-F-MKSMQT--HKGSVFAVFLEGKWLFTGG-WDKTVSVQELA 492 (552)
Q Consensus 419 ~~~~~~~~~~~~~~s~~~~~l~~g-~~dg~i~iwd~~~-~-~~~~~~--h~~~v~~v~~~~~~l~sgs-~dg~i~iwd~~ 492 (552)
. ..-.... .+++++.++.|+.+ ...+.|...++.. . ...... ......+++.++.+|+... .++.|+..+..
T Consensus 160 ~-~~~~~p~-gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~ 237 (266)
T d1ijqa1 160 T-ENIQWPN-GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL 237 (266)
T ss_dssp C-SSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred c-cccceee-EEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEECC
Confidence 2 2222233 36888877766665 4467888888542 2 222222 2234567777666666554 56788888876
Q ss_pred CCee
Q 008820 493 GDEF 496 (552)
Q Consensus 493 ~~~~ 496 (552)
++..
T Consensus 238 ~g~~ 241 (266)
T d1ijqa1 238 TGSD 241 (266)
T ss_dssp TCCC
T ss_pred CCcc
Confidence 6543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=94.33 E-value=1.3 Score=37.73 Aligned_cols=96 Identities=7% Similarity=0.116 Sum_probs=60.8
Q ss_pred EEeeC--CCEEEEeeCCCcEEEEECCCCceeEEecCCCCCeEEEEEe-CC-EEEEEe-CCC-----cEEEEECCCCceeE
Q 008820 347 ALTTS--GRYLYTGSGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC-NG-VLYSGS-RDG-----TIRLWSLSDHSLLT 416 (552)
Q Consensus 347 ~~~~~--~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~-~l~s~~-~dg-----~i~iwd~~~~~~~~ 416 (552)
.++|+ |+.++..+. |.|.+.|+.+++.. .+..+.+.+...+|+ ++ .|+... .++ .|.+++..+++...
T Consensus 5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEET-TEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEeC-CcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 35677 887776544 67999999888765 555577778899999 44 555433 222 47788887776543
Q ss_pred EEecC----CCCceEEEEEEcCCCCEEEEEEC
Q 008820 417 VLEED----SSGAVSSVLSLTAVQHTLVVSHE 444 (552)
Q Consensus 417 ~~~~~----~~~~~~~~~~~s~~~~~l~~g~~ 444 (552)
..... ..........++|+++.++....
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 114 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA 114 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred eeecCCCccCccccccccccCCCCCEEEEEEc
Confidence 22111 00111223679999998887543
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.32 E-value=1.5 Score=38.10 Aligned_cols=218 Identities=9% Similarity=0.152 Sum_probs=122.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCce
Q 008820 262 GGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWR 341 (552)
Q Consensus 262 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 341 (552)
.+.+|--+ ..++.++|+++.+.++.+.-. ..|.--.|..+.. |+-. .+..|+-|+++... .+.+.+..+....
T Consensus 74 ~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~~--L~lV-T~taVYHW~~~g~s--~P~k~fdR~~~L~ 146 (327)
T d1utca2 74 SKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNT--VALV-TDNAVYHWSMEGES--QPVKMFDRHSSLA 146 (327)
T ss_dssp SSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEESSSSE--EEEE-CSSEEEEEESSSSC--CCEEEEECCGGGT
T ss_pred CcEEEEec-CCeEEEEehhHhhhhceEEcC-CCcEEEEecCCCE--EEEE-cCCceEEEcccCCC--Cchhhhhhccccc
Confidence 45555544 558999999999999888744 5666667765443 3322 34679999996533 3444444444333
Q ss_pred eeeEEEEe--eCCCEEEE-e--e----CCCcEEEEECCCCceeEEecCCCCCeEEEEEeCC-----EEEEE---eCCCcE
Q 008820 342 YSGIHALT--TSGRYLYT-G--S----GDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVCNG-----VLYSG---SRDGTI 404 (552)
Q Consensus 342 ~~~~~~~~--~~~~~l~s-g--s----~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-----~l~s~---~~dg~i 404 (552)
...+..+. ++.++++. | . -.|.+.+|..+. +.-+.++||...-..+.+.++ .++.+ ...+++
T Consensus 147 ~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kL 225 (327)
T d1utca2 147 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 225 (327)
T ss_dssp TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEE
T ss_pred CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEE
Confidence 33444443 34443332 2 1 236788999754 455567777655444444411 22222 233688
Q ss_pred EEEECCCCc---e---eE--EEecC--CCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCcceeee--ecccceEEEEEe
Q 008820 405 RLWSLSDHS---L---LT--VLEED--SSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDKFMKSM--QTHKGSVFAVFL 472 (552)
Q Consensus 405 ~iwd~~~~~---~---~~--~~~~~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~--~~h~~~v~~v~~ 472 (552)
++.++.... . .+ .+..+ ..+...-.+..++.-..++.-+.-|.+++||+.+....+ +-....|..-++
T Consensus 226 hIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~ 305 (327)
T d1utca2 226 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAP 305 (327)
T ss_dssp EEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred EEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEecc
Confidence 999886521 1 11 11111 112222336778888889999999999999976543333 333444443333
Q ss_pred --cCCEEEEEeCCCeEE
Q 008820 473 --EGKWLFTGGWDKTVS 487 (552)
Q Consensus 473 --~~~~l~sgs~dg~i~ 487 (552)
+..-+++...+|.|.
T Consensus 306 ~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 306 HEATAGIIGVNRKGQVL 322 (327)
T ss_dssp ETTTTEEEEEETTSEEE
T ss_pred CCCCceEEEECCCCeEE
Confidence 333444445555543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=93.59 E-value=2.6 Score=38.52 Aligned_cols=220 Identities=9% Similarity=0.079 Sum_probs=122.7
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEEeCCC---------------------------------------CCe--EEEEEec-
Q 008820 265 LFSSSFDKSIHVWSLKDFSHVHTFKGHD---------------------------------------HKV--MAVVYVD- 302 (552)
Q Consensus 265 l~s~s~dg~I~iwd~~~~~~~~~~~~h~---------------------------------------~~v--~~v~~~~- 302 (552)
|.||+..|.|+|+-+.+++.++.+...+ +.. -.+.+..
T Consensus 16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG 95 (459)
T d1fwxa2 16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 95 (459)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence 5677788888888888777776653210 011 1334432
Q ss_pred --CCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEee--CCCEEEEeeCCC----------------
Q 008820 303 --EDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTT--SGRYLYTGSGDR---------------- 362 (552)
Q Consensus 303 --~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~sgs~dg---------------- 362 (552)
+|..+++.-..+..|.+.|+++.+..+.+..... ...+. ....+ +..+++.++.+.
T Consensus 96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~-~~~HG---~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y 171 (459)
T d1fwxa2 96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-KGIHG---LRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY 171 (459)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-CSEEE---EEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-E
T ss_pred ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCC-CCCce---eecccCCCeEEEEccCccccccCCCCccccchhhc
Confidence 5666777777899999999987665443332221 11111 12222 334777766532
Q ss_pred --cEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEEeCC-------------------------------------
Q 008820 363 --TIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSGSRD------------------------------------- 401 (552)
Q Consensus 363 --~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~d------------------------------------- 401 (552)
.+.++|..+.+....+.-. +....+.++ ++++++.+.+
T Consensus 172 ~~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~e 250 (459)
T d1fwxa2 172 VNVFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 250 (459)
T ss_dssp EEEEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred ceEEEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEE
Confidence 3677899888887766432 234456666 4466666543
Q ss_pred -CcEEEEECCCC---ceeEEEecCCCCceEEEEEEcCCCCEEEEEEC-CCcEEEEeCCcceeeeec---ccc--------
Q 008820 402 -GTIRLWSLSDH---SLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHE-SGSIKVWRNDKFMKSMQT---HKG-------- 465 (552)
Q Consensus 402 -g~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~---h~~-------- 465 (552)
+.+.+.|.+.. ..+..+..... ... +.++|||+++++++. +.++.++|.++....+.. ...
T Consensus 251 ingV~VVD~~~~~~~~v~~yIPVpKs--PHG-V~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el 327 (459)
T d1fwxa2 251 LNGVKVVDGRKEASSLFTRYIPIANN--PHG-CNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 327 (459)
T ss_dssp ETTEEEEECSGG--CSSEEEEEEESS--CCC-EEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC
T ss_pred eCCceeecccccCCcceeEEEecCCC--CCc-eEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc
Confidence 22344444321 12222222211 112 588999999888764 889999997653222110 011
Q ss_pred --eEEEEEec--CCEEEEEeCCCeEEEEecC
Q 008820 466 --SVFAVFLE--GKWLFTGGWDKTVSVQELA 492 (552)
Q Consensus 466 --~v~~v~~~--~~~l~sgs~dg~i~iwd~~ 492 (552)
.-.--.|| |....|---|..|.-|++.
T Consensus 328 glgPLht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 328 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred CcCccccccCCCceEEEEeeccceEEEEecc
Confidence 11222344 4344455579999999984
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=93.35 E-value=1.1 Score=40.68 Aligned_cols=150 Identities=13% Similarity=0.119 Sum_probs=84.1
Q ss_pred EEeeCCCEEEEeeCCC-----------cEEEEECCCCceeE--Ee-cCCCCCeEEEEEe-CC-EEEEEeCC-CcEEEEEC
Q 008820 347 ALTTSGRYLYTGSGDR-----------TIKAWSLLDGTLSC--TM-SGHKSAVSTLAVC-NG-VLYSGSRD-GTIRLWSL 409 (552)
Q Consensus 347 ~~~~~~~~l~sgs~dg-----------~i~iwd~~~~~~~~--~~-~~h~~~v~~l~~~-~~-~l~s~~~d-g~i~iwd~ 409 (552)
.+..+++.++.|+.+. .+.+||..+++-.. .. ..|.....+.++. ++ +++.|+.+ ..+.+||.
T Consensus 26 ~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~ 105 (387)
T d1k3ia3 26 IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDS 105 (387)
T ss_dssp EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEG
T ss_pred EEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecC
Confidence 3445667666666421 36789998775322 22 2233333444555 55 55555544 58999999
Q ss_pred CCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECC------CcEEEEeCCcceeeee-----------ccc-------c
Q 008820 410 SDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHES------GSIKVWRNDKFMKSMQ-----------THK-------G 465 (552)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d------g~i~iwd~~~~~~~~~-----------~h~-------~ 465 (552)
.+..-...-........ ...+..+|+++++.|+.+ ..+.+||..+...... .+. .
T Consensus 106 ~~~~w~~~~~~~~~r~~-~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (387)
T d1k3ia3 106 SSDSWIPGPDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNH 184 (387)
T ss_dssp GGTEEEECCCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCS
T ss_pred ccCcccccccccccccc-cceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccce
Confidence 87654332222212222 225677889999988753 3688998654221110 010 1
Q ss_pred eEEEEEecCCEEEEEeCCCeEEEEecCCCeee
Q 008820 466 SVFAVFLEGKWLFTGGWDKTVSVQELAGDEFE 497 (552)
Q Consensus 466 ~v~~v~~~~~~l~sgs~dg~i~iwd~~~~~~~ 497 (552)
.......+|+.++.++.++.+.++|..+....
T Consensus 185 ~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~ 216 (387)
T d1k3ia3 185 AWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK 216 (387)
T ss_dssp CCEEECGGGCEEECCSSSEEEEEECSTTCEEE
T ss_pred eEEEEeCCCCEEEecCcCCcEEecCcccCcEe
Confidence 11112237888888888888888888766443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.23 E-value=2.2 Score=36.52 Aligned_cols=191 Identities=11% Similarity=0.026 Sum_probs=109.4
Q ss_pred EEeeCCCEEEEe-eCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEE-EEeCCCcEEEEECCCCceeEEEecCC
Q 008820 347 ALTTSGRYLYTG-SGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLY-SGSRDGTIRLWSLSDHSLLTVLEEDS 422 (552)
Q Consensus 347 ~~~~~~~~l~sg-s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~ 422 (552)
++.+..+.++-. ..++.|+..+++.......+......+.+++++ .+.|+ +-...+.|.+.++........+...
T Consensus 42 d~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~- 120 (263)
T d1npea_ 42 AFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG- 120 (263)
T ss_dssp EEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-
T ss_pred EEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEeccc-
Confidence 455555555544 556789888987665555554444567889987 55555 5556789999998765543333222
Q ss_pred CCceEEEEEEcCCCCEEEEEECC-CcEEEE--eCCc-ceeee-ecccceEEEEEe--cCCEEEEE-eCCCeEEEEecCCC
Q 008820 423 SGAVSSVLSLTAVQHTLVVSHES-GSIKVW--RNDK-FMKSM-QTHKGSVFAVFL--EGKWLFTG-GWDKTVSVQELAGD 494 (552)
Q Consensus 423 ~~~~~~~~~~s~~~~~l~~g~~d-g~i~iw--d~~~-~~~~~-~~h~~~v~~v~~--~~~~l~sg-s~dg~i~iwd~~~~ 494 (552)
...... +++.|...+++..... +..+|+ ++.. ....+ ...-.....++. .++.|+.. ...+.|...|+.+.
T Consensus 121 l~~p~~-l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~ 199 (263)
T d1npea_ 121 LVNPRG-IVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP 199 (263)
T ss_dssp CSSEEE-EEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred ccCCcE-EEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCC
Confidence 233333 6788877777655432 333444 4332 22222 222234455554 46666544 56789999999876
Q ss_pred eeeeeeccCCCcccCcceEEEEEeCCeEEEEe-CCCeEEEEEecCCcceeEEE
Q 008820 495 EFEEDVIPTGAIPCGSVITALLYWQGKLFVGC-ADRTVKIALCNRQIPEIFSL 546 (552)
Q Consensus 495 ~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s-~Dg~v~iw~~~~~~~~~~~~ 546 (552)
......... ....++++.++.|+... ..+.|...+.. .+..+..+
T Consensus 200 ~~~~v~~~~------~~P~~lav~~~~lYwtd~~~~~I~~~~~~-~g~~~~~~ 245 (263)
T d1npea_ 200 GRRKVLEGL------QYPFAVTSYGKNLYYTDWKTNSVIAMDLA-ISKEMDTF 245 (263)
T ss_dssp EEEEEEECC------CSEEEEEEETTEEEEEETTTTEEEEEETT-TTEEEEEE
T ss_pred CeEEEECCC------CCcEEEEEECCEEEEEECCCCEEEEEECC-CCccceEE
Confidence 554433221 12357788788877665 45666555554 34444433
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=92.65 E-value=3.7 Score=37.55 Aligned_cols=183 Identities=10% Similarity=0.047 Sum_probs=107.6
Q ss_pred eCCCEEEEee-CCCcEEEEECCCCceeEEecC-CCCCeEEEEEe--CC--EEEEEeCCC------------------cEE
Q 008820 350 TSGRYLYTGS-GDRTIKAWSLLDGTLSCTMSG-HKSAVSTLAVC--NG--VLYSGSRDG------------------TIR 405 (552)
Q Consensus 350 ~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~--~~--~l~s~~~dg------------------~i~ 405 (552)
+||+++++.. .++.|.+-|+++.++.+.+.- ....+..+... ++ +++.++.+. .+.
T Consensus 97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t 176 (459)
T d1fwxa2 97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 176 (459)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence 3677666654 678999999999998664432 34456666665 33 777776632 367
Q ss_pred EEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCC---------------cEEEEeCC--------------cc
Q 008820 406 LWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESG---------------SIKVWRND--------------KF 456 (552)
Q Consensus 406 iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---------------~i~iwd~~--------------~~ 456 (552)
++|..+.+...++.... .... +.++++|+++++.+.+. .+.+++.. +.
T Consensus 177 ~ID~~tm~V~~QV~V~g--~ld~-~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing 253 (459)
T d1fwxa2 177 AVDADKWEVAWQVLVSG--NLDN-CDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 253 (459)
T ss_dssp EEETTTTEEEEEEEESS--CCCC-EEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEecCCceEEEEeeeCC--Chhc-cccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence 88999988887776542 2223 68999999999887542 13333311 01
Q ss_pred eeeeecc--------------cc-eEEEEEecCCEEEEEe-CCCeEEEEecCCCee--------eeeeccCCCcccCcce
Q 008820 457 MKSMQTH--------------KG-SVFAVFLEGKWLFTGG-WDKTVSVQELAGDEF--------EEDVIPTGAIPCGSVI 512 (552)
Q Consensus 457 ~~~~~~h--------------~~-~v~~v~~~~~~l~sgs-~dg~i~iwd~~~~~~--------~~~~~~~~~~~~~~~v 512 (552)
+..+... .+ .=..+++||+++++++ .+.++.++|++.-.. ....... ....-.-
T Consensus 254 V~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e--~elglgP 331 (459)
T d1fwxa2 254 VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE--PELGLGP 331 (459)
T ss_dssp EEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC--CBCCSCE
T ss_pred ceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee--cccCcCc
Confidence 1111111 00 0124566999888766 588999999863111 0000010 1112223
Q ss_pred EEEEEeC-CeEE-EEeCCCeEEEEEec
Q 008820 513 TALLYWQ-GKLF-VGCADRTVKIALCN 537 (552)
Q Consensus 513 ~~l~~~~-~~l~-s~s~Dg~v~iw~~~ 537 (552)
..-+|++ +..+ |---|..|--|++.
T Consensus 332 Lht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 332 LHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred cccccCCCceEEEEeeccceEEEEecc
Confidence 4456664 3333 34479999999985
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.49 E-value=2.9 Score=33.95 Aligned_cols=156 Identities=14% Similarity=0.113 Sum_probs=84.7
Q ss_pred eEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCcccccc-----ccCCCceeeeEEEEeeCCCEEEEeeC-CCcEEEEE
Q 008820 295 VMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKW-----NEEKDWRYSGIHALTTSGRYLYTGSG-DRTIKAWS 368 (552)
Q Consensus 295 v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~sgs~-dg~i~iwd 368 (552)
+.-+...-++.+++++|+......+|-++.++..+..... ...........-.+.....-++++.- .|.+++++
T Consensus 104 vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~t 183 (313)
T d2hu7a1 104 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD 183 (313)
T ss_dssp BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEEC
T ss_pred EEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEec
Confidence 3333334467889999999888899988766433222111 11111122233333444444555555 67777777
Q ss_pred CCCCceeEEecCCCCCeEEEEEeCCEEEEEeC----CCcEEEEECCCCceeEEEecCC------CCceEEEEEEcCCCCE
Q 008820 369 LLDGTLSCTMSGHKSAVSTLAVCNGVLYSGSR----DGTIRLWSLSDHSLLTVLEEDS------SGAVSSVLSLTAVQHT 438 (552)
Q Consensus 369 ~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~s~~~~~ 438 (552)
...|..-....-....| +++-. ..-| -+|+++++... +..+. ......-+-+.|++++
T Consensus 184 pkeGS~~~ay~~~gnKV----------~sdyEt~gEsywi-t~D~~s~~yer-ve~P~kd~~sy~p~~I~~~~Y~Pdd~L 251 (313)
T d2hu7a1 184 SGEGSFSSASISPGMKV----------TAGLETAREARLV-TVDPRDGSVED-LELPSKDFSSYRPTAITWLGYLPDGRL 251 (313)
T ss_dssp CSSEEEEEEEECTTSCE----------EEEEEESSCEEEE-EECTTTCCEEE-CCCSSCHHHHHCCSEEEEEEECTTSCE
T ss_pred CCCCcccceeEccCcee----------eeccCCCCceEEE-EEecccCceee-eecCcccceeecceEEEeeeeCCCCcE
Confidence 65554433332222233 22211 1123 34776654322 11111 1122222568999999
Q ss_pred EEEEECCCcEEEEeCCcceeeeec
Q 008820 439 LVVSHESGSIKVWRNDKFMKSMQT 462 (552)
Q Consensus 439 l~~g~~dg~i~iwd~~~~~~~~~~ 462 (552)
++.+-.||.-+++..++.+..-++
T Consensus 252 ~iiakrdG~s~lF~nGk~in~p~G 275 (313)
T d2hu7a1 252 AVVARREGRSAVFIDGERVEAPQG 275 (313)
T ss_dssp EEEEEETTEEEEEETTEEECCCSS
T ss_pred EEEEecCCchheeecceEecCCCC
Confidence 999999999999998877766554
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.36 E-value=7.2 Score=35.09 Aligned_cols=125 Identities=10% Similarity=0.131 Sum_probs=75.1
Q ss_pred ceEEEEEcCCEEEEEeCCCcEEEEeCCCCeEEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccc
Q 008820 254 CVTGLAVGGGFLFSSSFDKSIHVWSLKDFSHVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKK 333 (552)
Q Consensus 254 ~V~~l~~s~~~l~s~s~dg~I~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 333 (552)
.|..++|+++.++... ++.+..++..+-........-..++..+.++|. .++....++.+.++++.......
T Consensus 88 ~v~~vafs~d~l~v~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~---- 159 (381)
T d1xipa_ 88 DVIFVCFHGDQVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQ---- 159 (381)
T ss_dssp TEEEEEEETTEEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEE----
T ss_pred CeEEEEeeCCEEEEEe-CCCEEEEEeeccccccccccccccccceecCCc---eeEEEecCCCEEEEEeccCcccc----
Confidence 4888999977766654 456888887765555554445567888888763 45667778999999987653221
Q ss_pred cccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCCC--ceeEEe------c---CCCCCeEEEEEeCC
Q 008820 334 WNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLDG--TLSCTM------S---GHKSAVSTLAVCNG 393 (552)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~~--~~~~~~------~---~h~~~v~~l~~~~~ 393 (552)
....+.++.+.++..+.|-.+|...++-.... +....+ . .....|.+|.|.++
T Consensus 160 -------~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~ 223 (381)
T d1xipa_ 160 -------LAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSP 223 (381)
T ss_dssp -------EEESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSS
T ss_pred -------ccCCcceEEecCCceEEEEeCCcEEEEEeCCCceeeccCCCCccccCCCcCCCcceeEEEEecC
Confidence 11234455555665555555665555432111 111111 1 23456889999844
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.12 E-value=6.9 Score=33.22 Aligned_cols=194 Identities=12% Similarity=0.013 Sum_probs=104.4
Q ss_pred CccceEEEEEc--CCEEEEE-eCCCcEEEEeCCCCe----EEEEEeCCCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCC
Q 008820 251 HRDCVTGLAVG--GGFLFSS-SFDKSIHVWSLKDFS----HVHTFKGHDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFS 323 (552)
Q Consensus 251 H~~~V~~l~~s--~~~l~s~-s~dg~I~iwd~~~~~----~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 323 (552)
....+.+++|+ .+.++-. ..++.|+--++.... ....+......+.++++.+.++++.++-...+.|.+.+++
T Consensus 28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~ 107 (266)
T d1ijqa1 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 107 (266)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence 34456788887 5555554 456667766654321 1222333335567888877777787877888899999987
Q ss_pred CCCCCccccccccCCCceeeeEEEEeeCCCEEEEe--eCCCcEEEEECCCCceeEEecCCCCCeEEEEEe--CCEEEEE-
Q 008820 324 FPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTG--SGDRTIKAWSLLDGTLSCTMSGHKSAVSTLAVC--NGVLYSG- 398 (552)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg--s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~- 398 (552)
......... ... .... -.++.+...+++.. +..+.|.-.++............-...+.++++ ++.|+.+
T Consensus 108 g~~~~~~~~---~~~-~~P~-~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d 182 (266)
T d1ijqa1 108 GVKRKTLFR---ENG-SKPR-AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD 182 (266)
T ss_dssp SSSEEEEEE---CTT-CCEE-EEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEEc---CCC-CCcc-eEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEec
Confidence 543221111 111 1112 23555544444433 234567777775444433333334556888888 4555544
Q ss_pred eCCCcEEEEECCCCceeEEEecCCC-CceEEEEEEcCCCCEEEEE-ECCCcEEEEe
Q 008820 399 SRDGTIRLWSLSDHSLLTVLEEDSS-GAVSSVLSLTAVQHTLVVS-HESGSIKVWR 452 (552)
Q Consensus 399 ~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~g-~~dg~i~iwd 452 (552)
...+.|...|+.............. ..... +++. +..|+.. ..++.|+..+
T Consensus 183 ~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~-lav~--~~~ly~td~~~~~I~~~~ 235 (266)
T d1ijqa1 183 SKLHSISSIDVNGGNRKTILEDEKRLAHPFS-LAVF--EDKVFWTDIINEAIFSAN 235 (266)
T ss_dssp TTTTEEEEEETTSCSCEEEEECTTTTSSEEE-EEEE--TTEEEEEETTTTEEEEEE
T ss_pred CCcCEEEEEECCCCCEEEEEeCCCcccccEE-EEEE--CCEEEEEECCCCeEEEEE
Confidence 5678999999866544333333221 12222 3433 3444444 3556666665
|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.39 E-value=11 Score=33.78 Aligned_cols=243 Identities=9% Similarity=-0.050 Sum_probs=127.6
Q ss_pred CCCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCC------ccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcE
Q 008820 291 HDHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGH------EPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTI 364 (552)
Q Consensus 291 h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i 364 (552)
....|..|+. +....++-..||.|..|=....... ........ .......+..++......+.-..||.|
T Consensus 45 ~~~~i~~ia~---G~~h~~al~~~G~vy~wG~n~~GQLG~g~~~~~~~~~~~-~~~~~~~i~~i~~g~~~~~~~~~~g~v 120 (401)
T d1a12a_ 45 IPEDVVQAEA---GGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPG-KVELQEKVVQVSAGDSHTAALTDDGRV 120 (401)
T ss_dssp CSSCEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCE-ECCCCSCEEEEEECSSEEEEEETTSCE
T ss_pred CCCCeEEEEe---CCCEEEEEeCCCEEEEEeCCCCCCCCccccccccccccc-ccccccceeeecccccceeeccccccc
Confidence 3355777765 4456677788999999965432110 00000000 000111244555555677777889999
Q ss_pred EEEECCCC-------------ceeEEecCCCCCeEEEEEeCCEEEEEeCCCcEEEEECCCCcee----------------
Q 008820 365 KAWSLLDG-------------TLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLL---------------- 415 (552)
Q Consensus 365 ~iwd~~~~-------------~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------- 415 (552)
..|-.... ............|..++......+.-..++.+..|-......+
T Consensus 121 ~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~ 200 (401)
T d1a12a_ 121 FLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGL 200 (401)
T ss_dssp EEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGH
T ss_pred eeccccccccccccccCCccccceeeeeccCCceeEEEecccceeeeecCCcccccccCCccccCCCCccccccCCcccc
Confidence 99964211 1111222334466666665556666778999999975431100
Q ss_pred ------EEEec--CCCCceEEEEEEcCCCCEEEEEECCCcEEEEeCCc----------c------eeeeecccceEEEEE
Q 008820 416 ------TVLEE--DSSGAVSSVLSLTAVQHTLVVSHESGSIKVWRNDK----------F------MKSMQTHKGSVFAVF 471 (552)
Q Consensus 416 ------~~~~~--~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~----------~------~~~~~~h~~~v~~v~ 471 (552)
..... ........+..........+.-..+|.++.|.... . ...+......+..+.
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~ 280 (401)
T d1a12a_ 201 ERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFS 280 (401)
T ss_dssp HHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEE
T ss_pred ccccccceeeccccCCCCCceEEEEEecCCeEEEEecCCeEeeecccceecccccccccceeccccccccccceeEEEEe
Confidence 00000 00000011122222334555567888998885321 0 011112234455666
Q ss_pred ecCCEEEEEeCCCeEEEEecCCCeee------eeeccCCCcccCcceEEEEEeCCeEEEEeCCCeEEEEEec
Q 008820 472 LEGKWLFTGGWDKTVSVQELAGDEFE------EDVIPTGAIPCGSVITALLYWQGKLFVGCADRTVKIALCN 537 (552)
Q Consensus 472 ~~~~~l~sgs~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg~v~iw~~~ 537 (552)
......+.-..+|.++.|.-...... ........++....|..++......++-..||.|+.|=.+
T Consensus 281 ~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~i~~~~~i~~Is~G~~hs~alt~dG~v~~WG~n 352 (401)
T d1a12a_ 281 GGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMG 352 (401)
T ss_dssp ECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred eeccceeeeccCCCEEEecccccCccCCCcccccccCCEEcCCCCCeEEEEeeCCEEEEEeCCCeEEEEecC
Confidence 66677777888999999965321100 0000000111234588888877777778999999999554
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=80.38 E-value=19 Score=31.84 Aligned_cols=189 Identities=11% Similarity=0.191 Sum_probs=102.1
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCC--EEEEeeC--C--CcEEEEECCC-CceeE
Q 008820 304 DQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGR--YLYTGSG--D--RTIKAWSLLD-GTLSC 376 (552)
Q Consensus 304 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~sgs~--d--g~i~iwd~~~-~~~~~ 376 (552)
...+++.....+-|.+||++ ++.. .......-....-...+...++ -+++++. + .+|.+|.+.. ...+.
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l---~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKML---HSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEE---EECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEE---EecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence 34577777777789999986 3222 2222111111111222333433 3555553 2 3577787752 23333
Q ss_pred EecCC-------CCCeEEEEEe----CC--EEEEEeCCCcEEEEECC---CC----ceeEEEecCCCCceEEEEEEcCCC
Q 008820 377 TMSGH-------KSAVSTLAVC----NG--VLYSGSRDGTIRLWSLS---DH----SLLTVLEEDSSGAVSSVLSLTAVQ 436 (552)
Q Consensus 377 ~~~~h-------~~~v~~l~~~----~~--~l~s~~~dg~i~iwd~~---~~----~~~~~~~~~~~~~~~~~~~~s~~~ 436 (552)
.+... ...+..+|+. ++ ++++...+|.+..|.+. .+ +.++.+... ...-. |.+....
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~--~q~EG-CVvDde~ 191 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN--SQTEG-MAADDEY 191 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS--SCEEE-EEEETTT
T ss_pred cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC--Cccce-EEEeCCC
Confidence 33221 1246677763 33 67777889999888763 23 234455543 33344 5788888
Q ss_pred CEEEEEECCCcEEEEeCC----c---ceeeee--cccceEEEEEe----c--CCEEEEEeCCCeEEEEecCCC-eeeee
Q 008820 437 HTLVVSHESGSIKVWRND----K---FMKSMQ--THKGSVFAVFL----E--GKWLFTGGWDKTVSVQELAGD-EFEED 499 (552)
Q Consensus 437 ~~l~~g~~dg~i~iwd~~----~---~~~~~~--~h~~~v~~v~~----~--~~~l~sgs~dg~i~iwd~~~~-~~~~~ 499 (552)
..|+.+-++..|..++.. . .+.... .....+-.++. + |-+|+|.-.+++..+||..+. .....
T Consensus 192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~ 270 (353)
T d1h6la_ 192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVAD 270 (353)
T ss_dssp TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccce
Confidence 899999888766655532 1 111111 13445555542 3 334444446789999998763 44433
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=80.17 E-value=16 Score=30.83 Aligned_cols=221 Identities=14% Similarity=0.074 Sum_probs=107.1
Q ss_pred CCCeEEEEEecCCCCEEEEEcCCCcEEEEeCCCCCCCccccccccCCCceeeeEEEEeeCCCEEEEeeCCCcEEEEECCC
Q 008820 292 DHKVMAVVYVDEDQPLCISGDSGGGIFVWSFSFPLGHEPLKKWNEEKDWRYSGIHALTTSGRYLYTGSGDRTIKAWSLLD 371 (552)
Q Consensus 292 ~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~dg~i~iwd~~~ 371 (552)
...|..|+. +....+.-. ||.|..|-.........-.... ..+..++....+.+.- .||.+..|....
T Consensus 25 ~~~i~~va~---G~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~-------~~v~~v~~G~~~~~al-~dg~v~~wG~~~ 92 (273)
T d1jtdb_ 25 QSGVDAIAG---GYFHGLALK-GGKVLGWGANLNGQLTMPAATQ-------SGVDAIAAGNYHSLAL-KDGEVIAWGGNE 92 (273)
T ss_dssp SSSEEEEEE---CSSEEEEEE-TTEEEEEECCTTSTTSCCGGGG-------SCCCEEEECSSEEEEE-ETTEEEEEECCT
T ss_pred CCCcEEEEc---cCCEEEEEE-CCEEEEEeCCCCCceeeeeccc-------ccceEEecCCCceeee-eeeeeeccCCCc
Confidence 356777765 444444444 8999999765433221111100 1122333333333222 489999998643
Q ss_pred CceeEEecCCCCCeEEEEEeCCEEEEEeCCCcEEEEECCCCceeEEEecCCCCceEEEEEEcCCCCEEEEEECCCcEEEE
Q 008820 372 GTLSCTMSGHKSAVSTLAVCNGVLYSGSRDGTIRLWSLSDHSLLTVLEEDSSGAVSSVLSLTAVQHTLVVSHESGSIKVW 451 (552)
Q Consensus 372 ~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 451 (552)
.-...........+..++......+.. .|+.+..|.-......... ......+. ........++ ...++.++.|
T Consensus 93 ~gq~~~~~~~~~~~~~i~~~~~~~~~~-~dg~v~~~g~~~~~~~~~~-~~~~~~v~---~~~~~~~~~~-~~~~g~~~~~ 166 (273)
T d1jtdb_ 93 DGQTTVPAEARSGVDAIAAGAWASYAL-KDGKVIAWGDDSDGQTTVP-AEAQSGVT---ALDGGVYTAL-AVKNGGVIAW 166 (273)
T ss_dssp TSTTCCCGGGGSSCCEEEEETTEEEEE-ETTEEEEEECCTTSTTSCC-GGGGSSEE---EEEECSSEEE-EEETTEEEEE
T ss_pred ceeeccccccccceeEEeeeccccccc-ccccceecccCCCCceeee-ccCCceEE---EEeccceeee-eecccceeEe
Confidence 211111111123355555554443333 4899999975432221111 11111222 1222223333 3457888888
Q ss_pred eCCc--ceeeeecccceEEEEEecCCEEEEEeCCCeEEEEecCCCeeeeeeccCCCcccCcceEEEEEeCCeEEEEeCCC
Q 008820 452 RNDK--FMKSMQTHKGSVFAVFLEGKWLFTGGWDKTVSVQELAGDEFEEDVIPTGAIPCGSVITALLYWQGKLFVGCADR 529 (552)
Q Consensus 452 d~~~--~~~~~~~h~~~v~~v~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~s~s~Dg 529 (552)
-... ...........|..++....+.+.-. ||.|+.|=......... .......|..++-.....+.- .||
T Consensus 167 G~~~~g~~~~~~~~~~~v~~Is~G~~h~~~l~-dG~v~~WG~n~~Gql~~-----~~~~~~~v~~I~~G~~~~~~l-~~g 239 (273)
T d1jtdb_ 167 GDNYFGQTTVPAEAQSGVDDVAGGIFHSLALK-DGKVIAWGDNRYKQTTV-----PTEALSGVSAIASGEWYSLAL-KNG 239 (273)
T ss_dssp ECCTTSTTSCCGGGSSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTCC-----CGGGGSSCCEEEECSSCEEEE-ETT
T ss_pred ecccCCcccccccccCCccceeccceeeEEEe-cCcEEEcCCCCCCccCC-----CccCCCCcEEEEeCcceEEEE-ECC
Confidence 6332 11122224457788887555444444 89999996543211111 011123466676665553322 489
Q ss_pred eEEEEEec
Q 008820 530 TVKIALCN 537 (552)
Q Consensus 530 ~v~iw~~~ 537 (552)
.|..|=.+
T Consensus 240 ~v~~WG~~ 247 (273)
T d1jtdb_ 240 KVIAWGSS 247 (273)
T ss_dssp EEEEESTT
T ss_pred EEEEECCC
Confidence 99999544
|