Citrus Sinensis ID: 008831
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 552 | ||||||
| 296083035 | 673 | unnamed protein product [Vitis vinifera] | 0.998 | 0.818 | 0.644 | 0.0 | |
| 359475478 | 721 | PREDICTED: uncharacterized protein LOC10 | 0.998 | 0.764 | 0.591 | 1e-178 | |
| 255583327 | 658 | conserved hypothetical protein [Ricinus | 0.994 | 0.834 | 0.627 | 1e-174 | |
| 147771163 | 655 | hypothetical protein VITISV_013873 [Viti | 0.994 | 0.838 | 0.562 | 1e-165 | |
| 356495819 | 653 | PREDICTED: uncharacterized protein LOC10 | 0.987 | 0.834 | 0.585 | 1e-158 | |
| 449438615 | 641 | PREDICTED: uncharacterized protein LOC10 | 0.949 | 0.817 | 0.547 | 1e-138 | |
| 449479020 | 641 | PREDICTED: uncharacterized LOC101211967 | 0.951 | 0.819 | 0.544 | 1e-137 | |
| 15225987 | 629 | myosin heavy chain-related protein [Arab | 0.945 | 0.829 | 0.522 | 1e-136 | |
| 238479244 | 652 | myosin heavy chain-related protein [Arab | 0.945 | 0.800 | 0.514 | 1e-133 | |
| 297831932 | 629 | predicted protein [Arabidopsis lyrata su | 0.945 | 0.829 | 0.521 | 1e-133 |
| >gi|296083035|emb|CBI22439.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/557 (64%), Positives = 430/557 (77%), Gaps = 6/557 (1%)
Query: 1 MEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELK 60
++AEKQ+KFFQGC+AAAFAERD+S+MEAEKAKEKEEL Q+FN FQ R++EL S+N++ K
Sbjct: 103 LDAEKQIKFFQGCVAAAFAERDHSIMEAEKAKEKEELALQEFNNFQKRIKELESDNLKQK 162
Query: 61 KQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLE-TSWEDKCACLLLDSAEMWSF 119
+ N L+ DL QE+ NE+FK+VINKF+EIRQ SLE E +W+DKC CLL D EMWSF
Sbjct: 163 QLNVALQIDLANQEDQNETFKKVINKFFEIRQYSLEAFEDANWDDKCGCLLSDPVEMWSF 222
Query: 120 N---DTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKF 176
N +TSTSKYI ALE+ELE R+SV+NLQ+KLR+GLEIENHLKK V ELEK+ I S +
Sbjct: 223 NTNEETSTSKYIDALEEELEMVRNSVDNLQNKLRVGLEIENHLKKKVSELEKQKIISHQM 282
Query: 177 ISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRET 236
N I+ L HSQ R+HVVN L+EG+SH+KSI DV+EEK + D R QN QR+
Sbjct: 283 FKNRISGLLHYHSQHRLHVVNLLDEGKSHLKSIIDVVEEKIRQLD-ADREQNLEPPQRDL 341
Query: 237 KLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQ 296
KL E ECRDVH++ D N V++ N P + D G+ASE AQA+QEKVAALLLLSQ
Sbjct: 342 KLYENECRDVHVSIVGDHNSVAESNIPGLKNNVIDGMGDASEAFAQAMQEKVAALLLLSQ 401
Query: 297 QEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKE 356
QEERHLLE NVN LQKK+EELQRNL QVT EKVKALMELAQLKQ+YQLLQEKI ++MK+
Sbjct: 402 QEERHLLESNVNIVLQKKMEELQRNLLQVTNEKVKALMELAQLKQEYQLLQEKISHDMKQ 461
Query: 357 EKVLAGNGEKRIVIPERDGRLRNLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSN 416
LA GEKR ERDG+L+NLLKKT LRRWIG LD+SGN+ +A LN S R+SN
Sbjct: 462 GNFLADIGEKRNATLERDGKLKNLLKKTYLRRWIGALDYSGNQAEAHLNSEGNFSGRKSN 521
Query: 417 -SIDFARMRIENATLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDII 475
S+DFARM+IENATLKES+E+++HL SSIRRLRL+L + KE TS T+ S+ E LDDII
Sbjct: 522 YSMDFARMKIENATLKESMESIEHLTSSIRRLRLTLLEAKESVTSGGTVSSVLEALDDII 581
Query: 476 TEAKLVKTALGSSLPVSWIAESDDGSINENTDSESGDIHGDSSNEKMDSVSAAGFEMVEL 535
EAKLVKTALGSSLPVSW AE+D S E+ D+ G HGDSS+EK+DSV AAGFEMVEL
Sbjct: 582 NEAKLVKTALGSSLPVSWSAEADGESFGESMDNAPGCFHGDSSSEKIDSVCAAGFEMVEL 641
Query: 536 LILAAQILKDSTTKENS 552
LI A Q+LKDST K +S
Sbjct: 642 LIFAVQVLKDSTIKRSS 658
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475478|ref|XP_002264967.2| PREDICTED: uncharacterized protein LOC100251573 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|255583327|ref|XP_002532426.1| conserved hypothetical protein [Ricinus communis] gi|223527875|gb|EEF29967.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|147771163|emb|CAN60964.1| hypothetical protein VITISV_013873 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356495819|ref|XP_003516769.1| PREDICTED: uncharacterized protein LOC100775191 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449438615|ref|XP_004137083.1| PREDICTED: uncharacterized protein LOC101211967 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449479020|ref|XP_004155483.1| PREDICTED: uncharacterized LOC101211967 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|15225987|ref|NP_179075.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|334184229|ref|NP_001189526.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|3810592|gb|AAC69374.1| unknown protein [Arabidopsis thaliana] gi|330251225|gb|AEC06319.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|330251227|gb|AEC06321.1| myosin heavy chain-related protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|238479244|ref|NP_001154517.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|330251226|gb|AEC06320.1| myosin heavy chain-related protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297831932|ref|XP_002883848.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297329688|gb|EFH60107.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 552 | ||||||
| TAIR|locus:2064247 | 652 | MEE13 "AT2G14680" [Arabidopsis | 0.949 | 0.803 | 0.480 | 2.2e-114 | |
| DICTYBASE|DDB_G0290503 | 1492 | DDB_G0290503 [Dictyostelium di | 0.827 | 0.306 | 0.214 | 2.7e-08 | |
| UNIPROTKB|F1PRS3 | 1869 | CENPF "Uncharacterized protein | 0.559 | 0.165 | 0.229 | 3.5e-08 | |
| UNIPROTKB|Q02224 | 2701 | CENPE "Centromere-associated p | 0.532 | 0.108 | 0.220 | 6.7e-08 | |
| ZFIN|ZDB-GENE-091112-18 | 1686 | si:ch211-150d5.2 "si:ch211-150 | 0.748 | 0.244 | 0.210 | 2.3e-07 | |
| ZFIN|ZDB-GENE-040516-7 | 1061 | zgc:85722 "zgc:85722" [Danio r | 0.509 | 0.264 | 0.235 | 2.8e-07 | |
| UNIPROTKB|F1RR74 | 606 | LOC100515063 "Uncharacterized | 0.586 | 0.534 | 0.243 | 4.6e-07 | |
| UNIPROTKB|K7GMY0 | 626 | LOC100515063 "Uncharacterized | 0.586 | 0.517 | 0.243 | 4.8e-07 | |
| UNIPROTKB|K7GSC4 | 713 | LOC100515063 "Uncharacterized | 0.586 | 0.454 | 0.243 | 5.8e-07 | |
| ZFIN|ZDB-GENE-060929-860 | 2690 | cenpe "centromere protein E" [ | 0.75 | 0.153 | 0.217 | 6.3e-07 |
| TAIR|locus:2064247 MEE13 "AT2G14680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1128 (402.1 bits), Expect = 2.2e-114, P = 2.2e-114
Identities = 273/568 (48%), Positives = 358/568 (63%)
Query: 1 MEAEKQVKFFQGCMAAAFAERDNSVMXXXXXXXXXXLMSQKFNEFQTRLEELSSENIELK 60
+EAEKQV+FFQG +AAAF+ERD SVM +MSQK +E + RLEELSS+ + K
Sbjct: 103 LEAEKQVRFFQGSVAAAFSERDKSVMEAEKAEENAEMMSQKLSEIEMRLEELSSDCLVQK 162
Query: 61 KQNATLRFDLEKQEELNESFKEVINKFYEIRQQSL-EVLETSWEDKCACLLLDSAEMWSF 119
+ N TL+ DL K EE ++ VI KFY+IR+ SL E LE S +KCA LL D E W+F
Sbjct: 163 RLNDTLQADLAKLEEQTRTYAGVIEKFYDIRKASLCESLEMSLHEKCASLLDDPIESWTF 222
Query: 120 NDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISN 179
ND STS Y++ALE EL K +++V+NLQSKLR+GLEIENHLKK VR LEKK I +D I N
Sbjct: 223 NDPSTSDYVAALEGELGKVKNTVDNLQSKLRVGLEIENHLKKRVRALEKKNIVADGLIVN 282
Query: 180 AIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQ-HCDDVIRGQNTGTYQRETKL 238
I ++R HSQLR +++ L E +IKSIS +EEK + H +V QN Q + K
Sbjct: 283 GITDIRHHHSQLRAYIIALLNEEGLYIKSISKNVEEKLKLHSSEV---QNVVPPQHDLKP 339
Query: 239 DEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQE 298
DE ECRDVH+ ++ V++ + + I A+ +G+ASE AQALQEKV ALLLLSQQE
Sbjct: 340 DESECRDVHMTTVVESCQVTKLAEASIAKIMAESRGDASEAFAQALQEKVGALLLLSQQE 399
Query: 299 ERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE-----KIC-- 351
ERHL E NVN+ALQ+K++ELQRN+ QVT EKV+ LMELAQL+Q+YQ L+E K C
Sbjct: 400 ERHLHEENVNAALQQKVDELQRNILQVTNEKVRTLMELAQLRQEYQSLREHGTFCKWCKP 459
Query: 352 ------------NEMK--EEKVLAGNGEKRIVIPERDGXXXXXXXXXXXXXWIGTLDFSG 397
N+M E+ GN + ++ E+DG WI D S
Sbjct: 460 SFKTNFALSSVLNKMSGTREEESTGNSGRIVISNEKDGRLKNMWKKSYINRWI---DPS- 515
Query: 398 NEGQADLNIREGISTRRSNSIDFARMRIENATLKESLENMDHXXXXXXXXXXXXXKVKEL 457
+ G + LN + SN I+++RM++E A +KE+LE+M H KVKEL
Sbjct: 516 SRGGSHLNTEADYA---SN-IEYSRMKVEYAAIKENLESMGHLTTSIRRLRLALLKVKEL 571
Query: 458 ATSEDTIGSMSETLDDIITEAKLVKTALGSSLPVSWIAESDDGSINENTDSESGDIHGDS 517
+E T S + +I+ EA +KTALG S+P+SW AESD S+ TD G+S
Sbjct: 572 NDTETTARSCEVAIANILVEATHLKTALGISIPISWSAESDIESV---TD-------GES 621
Query: 518 SNEKMDSVSAAGFEMVELLILAAQILKD 545
S E+ DSVSAAGFEMVEL+ILAA+I+K+
Sbjct: 622 SCERTDSVSAAGFEMVELVILAAEIMKE 649
|
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| DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PRS3 CENPF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q02224 CENPE "Centromere-associated protein E" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-091112-18 si:ch211-150d5.2 "si:ch211-150d5.2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-040516-7 zgc:85722 "zgc:85722" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1RR74 LOC100515063 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|K7GMY0 LOC100515063 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|K7GSC4 LOC100515063 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-060929-860 cenpe "centromere protein E" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00001484001 | SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (658 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 552 | |||
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 91.6 | |
| PF09789 | 319 | DUF2353: Uncharacterized coiled-coil protein (DUF2 | 88.57 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 86.7 | |
| PRK11637 | 428 | AmiB activator; Provisional | 86.03 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 85.83 | |
| smart00502 | 127 | BBC B-Box C-terminal domain. Coiled coil region C- | 84.36 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 83.42 | |
| PF05667 | 594 | DUF812: Protein of unknown function (DUF812); Inte | 82.66 | |
| PF06160 | 560 | EzrA: Septation ring formation regulator, EzrA ; I | 80.87 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 80.28 |
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
Probab=91.60 E-value=11 Score=34.88 Aligned_cols=123 Identities=26% Similarity=0.342 Sum_probs=84.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhccchhhh
Q 008831 26 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDK 105 (552)
Q Consensus 26 mEaEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~eK 105 (552)
+|++-|-++-+..-+++.+++.|.....-.+.....-|..|..++..+.++......-.. ..+.
T Consensus 7 ~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le-----------e~~~----- 70 (143)
T PF12718_consen 7 LEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE-----------ESEK----- 70 (143)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHH-----
Confidence 466666777777777888888888777777777777777777777777777664433222 1111
Q ss_pred hchhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHH
Q 008831 106 CACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDK 175 (552)
Q Consensus 106 cs~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkqi~~dk 175 (552)
.-+=++ +..+-|.-||++|+.....+.-..-+||=.=.=-.|+-|+|..||.+..-+.+
T Consensus 71 ----------~~~~~E-~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~ 129 (143)
T PF12718_consen 71 ----------RKSNAE-QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEE 129 (143)
T ss_pred ----------HHHhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHH
Confidence 000011 46788999999999998888888888774322234889999999988765543
|
In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis []. |
| >PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
| >smart00502 BBC B-Box C-terminal domain | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site | Back alignment and domain information |
|---|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 552 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-07 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 2e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 75.7 bits (185), Expect = 2e-14
Identities = 82/570 (14%), Positives = 168/570 (29%), Gaps = 160/570 (28%)
Query: 23 NSVMEAEKA----KEKEELMSQKFNEFQT-RLEELSSENIELKKQNATLRFDLEKQEELN 77
V + K+ +E + ++ K T RL + K++ +F +E+ +N
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT----LLSKQEEMVQKF-VEEVLRIN 90
Query: 78 ESFKEVINKF-YEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTST-SKYISALEDEL 135
F +++ E RQ S+ + ++ L +ND +KY +
Sbjct: 91 YKF--LMSPIKTEQRQPSMM--TRMYIEQRDRL---------YNDNQVFAKYNVSRLQPY 137
Query: 136 EKTRSSVENLQSKLRMGLEIENH----LKKSVRELEKKIIHSDKFI---SNAI--AELRL 186
K R ++ L+ + + K+ + + S K I L+
Sbjct: 138 LKLRQALLELRPAKNVLI----DGVLGSGKTW--VALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 187 CHS---------QLRVHVVNSLEEGRSHIKSISDVIEE------------KTQHC----D 221
C+S +L + + H +I I ++C
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 222 DVIRGQNTGTYQRETKLDEFE--C------RDVHINNDADTNLVSQRNDPAYCDIEADRK 273
+V QN + F C R + + + ++
Sbjct: 252 NV---QNAKA------WNAFNLSCKILLTTRFKQVTDFLSAATTTHI------SLDHHSM 296
Query: 274 G----EASETLAQALQEKVAAL---------LLLSQ-----QEE-------RHLLERNVN 308
E L + L + L LS ++ +H+ +
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 309 SALQKKIEEL----QRNLFQ---VTTEKVK---ALMELAQLKQDYQLLQEKICNEMKEEK 358
+ ++ + L R +F V L+ L + N++ +
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD-VMVVVNKLHKYS 415
Query: 359 VLAGNG-EKRIVIPERDGRLR-NLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSN 416
++ E I IP L+ L + L R I +D NI + +
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSI--VDH--------YNIP-----KTFD 460
Query: 417 SIDFARMRIENAT-------LKESLENMDHLISSIRRLRLSLS----KVKELATSEDTIG 465
S D ++ LK ++ R + L K++ +T+ + G
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNI--EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 466 SMSETLDDI------ITEAKLVKTALGSSL 489
S+ TL + I + L +++
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAI 548
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 552 | |||
| 3o0z_A | 168 | RHO-associated protein kinase 1; coiled-coil, tran | 84.78 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 84.02 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 80.42 | |
| 1deq_A | 390 | Fibrinogen (alpha chain); coiled-coil, blood clott | 80.2 |
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.78 E-value=26 Score=32.88 Aligned_cols=125 Identities=14% Similarity=0.182 Sum_probs=88.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhccchhhhhc
Q 008831 28 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCA 107 (552)
Q Consensus 28 aEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~eKcs 107 (552)
+.|.|-..-.+....+.++.-++|++..|.-.....+.|+.+++.+-.+++.= -|.++. ..+
T Consensus 29 ~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qE---------r~~r~q-~se-------- 90 (168)
T 3o0z_A 29 AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAE---------RRDRGH-DSE-------- 90 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH-HHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH-HHH--------
Confidence 45667777788889999999999999999999999999999999999888721 111111 000
Q ss_pred hhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHh
Q 008831 108 CLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLC 187 (552)
Q Consensus 108 ~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkqi~~dk~i~Ngis~Lq~~ 187 (552)
++. -+..-|.+|++|++.++....+++..- ++|+.++..|||...-+.==+.=.|-.+|+-
T Consensus 91 -~~~-----------elq~ri~~L~~El~~~k~~~~k~~~e~-------r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~ 151 (168)
T 3o0z_A 91 -MIG-----------DLQARITSLQEEVKHLKHNLEKVEGER-------KEAQDMLNHSEKEKNNLEIDLNYKLKSLQQR 151 (168)
T ss_dssp -HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 000 022368888888888888887776654 3689999999999876653333455666655
Q ss_pred hh
Q 008831 188 HS 189 (552)
Q Consensus 188 h~ 189 (552)
|-
T Consensus 152 ~e 153 (168)
T 3o0z_A 152 LE 153 (168)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00