Citrus Sinensis ID: 008831


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550--
MEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVLAGNGEKRIVIPERDGRLRNLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSNSIDFARMRIENATLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSSLPVSWIAESDDGSINENTDSESGDIHGDSSNEKMDSVSAAGFEMVELLILAAQILKDSTTKENS
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHcccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccc
ccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHccccHHHHccHHccccHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccccccccccccccccccHcHHHHHHHHHHHHHHHHHHHccccccc
MEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLdsaemwsfndtstSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTqhcddvirgqntgtyqretkldefecrdvhinndadtnlvsqrndpaycdieadrkGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVlagngekriviperdGRLRNLLKktnlrrwigtldfsgnegqadlniregistrrsnSIDFARMRIENATLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTAlgsslpvswiaesddgsinentdsesgdihgdssnekmDSVSAAGFEMVELLILAAQILKdsttkens
MEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKtqhcddvirgqntgtyqreTKLDEFECRDVHinndadtnlvsqrndPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEekvlagngekriviperdgrlrnllkktnlrrwigtldfsgnegqadlniregistrrsnsidfARMRIENATLKESLENMDHLISSIRRLRLSLSKVkelatsedtigsmseTLDDIITEAKLVKTALgsslpvswiaesddgsinentdsesgdihgdssNEKMDSVSAAGFEMVELLILAAQilkdsttkens
MEAEKQVKFFQGCMAAAFAERDNSVMeaekakekeeLMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVLAGNGEKRIVIPERDGrlrnllkktnlrrWIGTLDFSGNEGQADLNIREGISTRRSNSIDFARMRIENATLKESLENMDHlissirrlrlslsKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSSLPVSWIAESDDGSINENTDSESGDIHGDSSNEKMDSVSAAGFEMVELLILAAQILKDSTTKENS
********FFQGCMAAAF************************************************************SFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYI*********************************SVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLV******AYCDI***************LQEKVAALLLLS******LLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVLAGNGEKRIVIPERDGRLRNLLKKTNLRRWIGTLDFSGNEGQADLNI*************FARMRI************DHLISSIRRLRLSL******************TLDDIITEAKLVKTALGSSLPVSWI*********************************AGFEMVELLILAAQIL*********
*****QVKFFQGCMAAAFA****************************************************************INKFYEIRQQSLEVLETSWEDKCACLLLDSAEM***********************************************************FISNAIAELRLCHSQLRVHVVNSL********************************************R*V*I*************************************E***************************************************QLK**********************************GRLRNLLKKTNLRRW***************************SIDFARMRIENATLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSSLPVSWIA******************************SAAGFEMVELLILAAQIL*********
MEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALE***********NLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKEEKVLAGNGEKRIVIPERDGRLRNLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSNSIDFARMRIENATLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSSLPVSWIAESDDGSIN*******************DSVSAAGFEMVELLILAAQILK********
MEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNT*****ETKLDEFECRDVHINNDA**********************EASETLAQALQEKVAALLLLSQQEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICN********AGNGEKRIVIPERDGRLRNLLKKTNLRRWIGTL***********************SIDFARMRIENATLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSSLPVSWIA***************************DSVSAAGFEMVELLILAAQILKDS******
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MEAEKQVKFFQGCMAxxxxxxxxxxxxxxxxxxxxxLMSQKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNESFKEVINKFYEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTSTSKYxxxxxxxxxxxxxxxxxxxxxLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRETKLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxICNEMKEEKVLAGNGEKRIVIPERDGRLRNLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSNSIDFARMRIENATLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDIITEAKLVKTALGSSLPVSWIAESDDGSINENTDSESGDIHGDSSNEKMDSVSAAGFEMVELLILAAQILKDSTTKENS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query552
296083035 673 unnamed protein product [Vitis vinifera] 0.998 0.818 0.644 0.0
359475478 721 PREDICTED: uncharacterized protein LOC10 0.998 0.764 0.591 1e-178
255583327 658 conserved hypothetical protein [Ricinus 0.994 0.834 0.627 1e-174
147771163 655 hypothetical protein VITISV_013873 [Viti 0.994 0.838 0.562 1e-165
356495819 653 PREDICTED: uncharacterized protein LOC10 0.987 0.834 0.585 1e-158
449438615641 PREDICTED: uncharacterized protein LOC10 0.949 0.817 0.547 1e-138
449479020641 PREDICTED: uncharacterized LOC101211967 0.951 0.819 0.544 1e-137
15225987629 myosin heavy chain-related protein [Arab 0.945 0.829 0.522 1e-136
238479244652 myosin heavy chain-related protein [Arab 0.945 0.800 0.514 1e-133
297831932629 predicted protein [Arabidopsis lyrata su 0.945 0.829 0.521 1e-133
>gi|296083035|emb|CBI22439.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/557 (64%), Positives = 430/557 (77%), Gaps = 6/557 (1%)

Query: 1   MEAEKQVKFFQGCMAAAFAERDNSVMEAEKAKEKEELMSQKFNEFQTRLEELSSENIELK 60
           ++AEKQ+KFFQGC+AAAFAERD+S+MEAEKAKEKEEL  Q+FN FQ R++EL S+N++ K
Sbjct: 103 LDAEKQIKFFQGCVAAAFAERDHSIMEAEKAKEKEELALQEFNNFQKRIKELESDNLKQK 162

Query: 61  KQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLE-TSWEDKCACLLLDSAEMWSF 119
           + N  L+ DL  QE+ NE+FK+VINKF+EIRQ SLE  E  +W+DKC CLL D  EMWSF
Sbjct: 163 QLNVALQIDLANQEDQNETFKKVINKFFEIRQYSLEAFEDANWDDKCGCLLSDPVEMWSF 222

Query: 120 N---DTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKF 176
           N   +TSTSKYI ALE+ELE  R+SV+NLQ+KLR+GLEIENHLKK V ELEK+ I S + 
Sbjct: 223 NTNEETSTSKYIDALEEELEMVRNSVDNLQNKLRVGLEIENHLKKKVSELEKQKIISHQM 282

Query: 177 ISNAIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQHCDDVIRGQNTGTYQRET 236
             N I+ L   HSQ R+HVVN L+EG+SH+KSI DV+EEK +  D   R QN    QR+ 
Sbjct: 283 FKNRISGLLHYHSQHRLHVVNLLDEGKSHLKSIIDVVEEKIRQLD-ADREQNLEPPQRDL 341

Query: 237 KLDEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQ 296
           KL E ECRDVH++   D N V++ N P   +   D  G+ASE  AQA+QEKVAALLLLSQ
Sbjct: 342 KLYENECRDVHVSIVGDHNSVAESNIPGLKNNVIDGMGDASEAFAQAMQEKVAALLLLSQ 401

Query: 297 QEERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQEKICNEMKE 356
           QEERHLLE NVN  LQKK+EELQRNL QVT EKVKALMELAQLKQ+YQLLQEKI ++MK+
Sbjct: 402 QEERHLLESNVNIVLQKKMEELQRNLLQVTNEKVKALMELAQLKQEYQLLQEKISHDMKQ 461

Query: 357 EKVLAGNGEKRIVIPERDGRLRNLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSN 416
              LA  GEKR    ERDG+L+NLLKKT LRRWIG LD+SGN+ +A LN     S R+SN
Sbjct: 462 GNFLADIGEKRNATLERDGKLKNLLKKTYLRRWIGALDYSGNQAEAHLNSEGNFSGRKSN 521

Query: 417 -SIDFARMRIENATLKESLENMDHLISSIRRLRLSLSKVKELATSEDTIGSMSETLDDII 475
            S+DFARM+IENATLKES+E+++HL SSIRRLRL+L + KE  TS  T+ S+ E LDDII
Sbjct: 522 YSMDFARMKIENATLKESMESIEHLTSSIRRLRLTLLEAKESVTSGGTVSSVLEALDDII 581

Query: 476 TEAKLVKTALGSSLPVSWIAESDDGSINENTDSESGDIHGDSSNEKMDSVSAAGFEMVEL 535
            EAKLVKTALGSSLPVSW AE+D  S  E+ D+  G  HGDSS+EK+DSV AAGFEMVEL
Sbjct: 582 NEAKLVKTALGSSLPVSWSAEADGESFGESMDNAPGCFHGDSSSEKIDSVCAAGFEMVEL 641

Query: 536 LILAAQILKDSTTKENS 552
           LI A Q+LKDST K +S
Sbjct: 642 LIFAVQVLKDSTIKRSS 658




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475478|ref|XP_002264967.2| PREDICTED: uncharacterized protein LOC100251573 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255583327|ref|XP_002532426.1| conserved hypothetical protein [Ricinus communis] gi|223527875|gb|EEF29967.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|147771163|emb|CAN60964.1| hypothetical protein VITISV_013873 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356495819|ref|XP_003516769.1| PREDICTED: uncharacterized protein LOC100775191 [Glycine max] Back     alignment and taxonomy information
>gi|449438615|ref|XP_004137083.1| PREDICTED: uncharacterized protein LOC101211967 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449479020|ref|XP_004155483.1| PREDICTED: uncharacterized LOC101211967 [Cucumis sativus] Back     alignment and taxonomy information
>gi|15225987|ref|NP_179075.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|334184229|ref|NP_001189526.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|3810592|gb|AAC69374.1| unknown protein [Arabidopsis thaliana] gi|330251225|gb|AEC06319.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|330251227|gb|AEC06321.1| myosin heavy chain-related protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|238479244|ref|NP_001154517.1| myosin heavy chain-related protein [Arabidopsis thaliana] gi|330251226|gb|AEC06320.1| myosin heavy chain-related protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297831932|ref|XP_002883848.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297329688|gb|EFH60107.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query552
TAIR|locus:2064247652 MEE13 "AT2G14680" [Arabidopsis 0.949 0.803 0.480 2.2e-114
DICTYBASE|DDB_G0290503 1492 DDB_G0290503 [Dictyostelium di 0.827 0.306 0.214 2.7e-08
UNIPROTKB|F1PRS3 1869 CENPF "Uncharacterized protein 0.559 0.165 0.229 3.5e-08
UNIPROTKB|Q02224 2701 CENPE "Centromere-associated p 0.532 0.108 0.220 6.7e-08
ZFIN|ZDB-GENE-091112-18 1686 si:ch211-150d5.2 "si:ch211-150 0.748 0.244 0.210 2.3e-07
ZFIN|ZDB-GENE-040516-7 1061 zgc:85722 "zgc:85722" [Danio r 0.509 0.264 0.235 2.8e-07
UNIPROTKB|F1RR74606 LOC100515063 "Uncharacterized 0.586 0.534 0.243 4.6e-07
UNIPROTKB|K7GMY0626 LOC100515063 "Uncharacterized 0.586 0.517 0.243 4.8e-07
UNIPROTKB|K7GSC4713 LOC100515063 "Uncharacterized 0.586 0.454 0.243 5.8e-07
ZFIN|ZDB-GENE-060929-860 2690 cenpe "centromere protein E" [ 0.75 0.153 0.217 6.3e-07
TAIR|locus:2064247 MEE13 "AT2G14680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1128 (402.1 bits), Expect = 2.2e-114, P = 2.2e-114
 Identities = 273/568 (48%), Positives = 358/568 (63%)

Query:     1 MEAEKQVKFFQGCMAAAFAERDNSVMXXXXXXXXXXLMSQKFNEFQTRLEELSSENIELK 60
             +EAEKQV+FFQG +AAAF+ERD SVM          +MSQK +E + RLEELSS+ +  K
Sbjct:   103 LEAEKQVRFFQGSVAAAFSERDKSVMEAEKAEENAEMMSQKLSEIEMRLEELSSDCLVQK 162

Query:    61 KQNATLRFDLEKQEELNESFKEVINKFYEIRQQSL-EVLETSWEDKCACLLLDSAEMWSF 119
             + N TL+ DL K EE   ++  VI KFY+IR+ SL E LE S  +KCA LL D  E W+F
Sbjct:   163 RLNDTLQADLAKLEEQTRTYAGVIEKFYDIRKASLCESLEMSLHEKCASLLDDPIESWTF 222

Query:   120 NDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISN 179
             ND STS Y++ALE EL K +++V+NLQSKLR+GLEIENHLKK VR LEKK I +D  I N
Sbjct:   223 NDPSTSDYVAALEGELGKVKNTVDNLQSKLRVGLEIENHLKKRVRALEKKNIVADGLIVN 282

Query:   180 AIAELRLCHSQLRVHVVNSLEEGRSHIKSISDVIEEKTQ-HCDDVIRGQNTGTYQRETKL 238
              I ++R  HSQLR +++  L E   +IKSIS  +EEK + H  +V   QN    Q + K 
Sbjct:   283 GITDIRHHHSQLRAYIIALLNEEGLYIKSISKNVEEKLKLHSSEV---QNVVPPQHDLKP 339

Query:   239 DEFECRDVHINNDADTNLVSQRNDPAYCDIEADRKGEASETLAQALQEKVAALLLLSQQE 298
             DE ECRDVH+    ++  V++  + +   I A+ +G+ASE  AQALQEKV ALLLLSQQE
Sbjct:   340 DESECRDVHMTTVVESCQVTKLAEASIAKIMAESRGDASEAFAQALQEKVGALLLLSQQE 399

Query:   299 ERHLLERNVNSALQKKIEELQRNLFQVTTEKVKALMELAQLKQDYQLLQE-----KIC-- 351
             ERHL E NVN+ALQ+K++ELQRN+ QVT EKV+ LMELAQL+Q+YQ L+E     K C  
Sbjct:   400 ERHLHEENVNAALQQKVDELQRNILQVTNEKVRTLMELAQLRQEYQSLREHGTFCKWCKP 459

Query:   352 ------------NEMK--EEKVLAGNGEKRIVIPERDGXXXXXXXXXXXXXWIGTLDFSG 397
                         N+M    E+   GN  + ++  E+DG             WI   D S 
Sbjct:   460 SFKTNFALSSVLNKMSGTREEESTGNSGRIVISNEKDGRLKNMWKKSYINRWI---DPS- 515

Query:   398 NEGQADLNIREGISTRRSNSIDFARMRIENATLKESLENMDHXXXXXXXXXXXXXKVKEL 457
             + G + LN     +   SN I+++RM++E A +KE+LE+M H             KVKEL
Sbjct:   516 SRGGSHLNTEADYA---SN-IEYSRMKVEYAAIKENLESMGHLTTSIRRLRLALLKVKEL 571

Query:   458 ATSEDTIGSMSETLDDIITEAKLVKTALGSSLPVSWIAESDDGSINENTDSESGDIHGDS 517
               +E T  S    + +I+ EA  +KTALG S+P+SW AESD  S+   TD       G+S
Sbjct:   572 NDTETTARSCEVAIANILVEATHLKTALGISIPISWSAESDIESV---TD-------GES 621

Query:   518 SNEKMDSVSAAGFEMVELLILAAQILKD 545
             S E+ DSVSAAGFEMVEL+ILAA+I+K+
Sbjct:   622 SCERTDSVSAAGFEMVELVILAAEIMKE 649




GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1PRS3 CENPF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q02224 CENPE "Centromere-associated protein E" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-091112-18 si:ch211-150d5.2 "si:ch211-150d5.2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040516-7 zgc:85722 "zgc:85722" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1RR74 LOC100515063 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|K7GMY0 LOC100515063 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|K7GSC4 LOC100515063 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-860 cenpe "centromere protein E" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00001484001
SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (658 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 552
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 91.6
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 88.57
PRK04863 1486 mukB cell division protein MukB; Provisional 86.7
PRK11637428 AmiB activator; Provisional 86.03
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 85.83
smart00502127 BBC B-Box C-terminal domain. Coiled coil region C- 84.36
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 83.42
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 82.66
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 80.87
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 80.28
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
Probab=91.60  E-value=11  Score=34.88  Aligned_cols=123  Identities=26%  Similarity=0.342  Sum_probs=84.0

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhccchhhh
Q 008831           26 MEAEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDK  105 (552)
Q Consensus        26 mEaEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~eK  105 (552)
                      +|++-|-++-+..-+++.+++.|.....-.+.....-|..|..++..+.++......-..           ..+.     
T Consensus         7 ~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le-----------e~~~-----   70 (143)
T PF12718_consen    7 LEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE-----------ESEK-----   70 (143)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHH-----
Confidence            466666777777777888888888777777777777777777777777777664433222           1111     


Q ss_pred             hchhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHH
Q 008831          106 CACLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDK  175 (552)
Q Consensus       106 cs~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkqi~~dk  175 (552)
                                .-+=++ +..+-|.-||++|+.....+.-..-+||=.=.=-.|+-|+|..||.+..-+.+
T Consensus        71 ----------~~~~~E-~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~  129 (143)
T PF12718_consen   71 ----------RKSNAE-QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEE  129 (143)
T ss_pred             ----------HHHhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHH
Confidence                      000011 46788999999999998888888888774322234889999999988765543



In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>smart00502 BBC B-Box C-terminal domain Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query552
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 75.7 bits (185), Expect = 2e-14
 Identities = 82/570 (14%), Positives = 168/570 (29%), Gaps = 160/570 (28%)

Query: 23  NSVMEAEKA----KEKEELMSQKFNEFQT-RLEELSSENIELKKQNATLRFDLEKQEELN 77
             V +  K+    +E + ++  K     T RL       +  K++    +F +E+   +N
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT----LLSKQEEMVQKF-VEEVLRIN 90

Query: 78  ESFKEVINKF-YEIRQQSLEVLETSWEDKCACLLLDSAEMWSFNDTST-SKYISALEDEL 135
             F  +++    E RQ S+      + ++   L         +ND    +KY  +     
Sbjct: 91  YKF--LMSPIKTEQRQPSMM--TRMYIEQRDRL---------YNDNQVFAKYNVSRLQPY 137

Query: 136 EKTRSSVENLQSKLRMGLEIENH----LKKSVRELEKKIIHSDKFI---SNAI--AELRL 186
            K R ++  L+    + +           K+   +   +  S K        I    L+ 
Sbjct: 138 LKLRQALLELRPAKNVLI----DGVLGSGKTW--VALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 187 CHS---------QLRVHVVNSLEEGRSHIKSISDVIEE------------KTQHC----D 221
           C+S         +L   +  +      H  +I   I                ++C     
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 222 DVIRGQNTGTYQRETKLDEFE--C------RDVHINNDADTNLVSQRNDPAYCDIEADRK 273
           +V   QN          + F   C      R   + +       +         ++    
Sbjct: 252 NV---QNAKA------WNAFNLSCKILLTTRFKQVTDFLSAATTTHI------SLDHHSM 296

Query: 274 G----EASETLAQALQEKVAAL---------LLLSQ-----QEE-------RHLLERNVN 308
                E    L + L  +   L           LS      ++        +H+    + 
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 309 SALQKKIEEL----QRNLFQ---VTTEKVK---ALMELAQLKQDYQLLQEKICNEMKEEK 358
           + ++  +  L     R +F    V          L+ L             + N++ +  
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD-VMVVVNKLHKYS 415

Query: 359 VLAGNG-EKRIVIPERDGRLR-NLLKKTNLRRWIGTLDFSGNEGQADLNIREGISTRRSN 416
           ++     E  I IP     L+  L  +  L R I  +D          NI      +  +
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSI--VDH--------YNIP-----KTFD 460

Query: 417 SIDFARMRIENAT-------LKESLENMDHLISSIRRLRLSLS----KVKELATSEDTIG 465
           S D     ++          LK         ++  R + L       K++  +T+ +  G
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNI--EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518

Query: 466 SMSETLDDI------ITEAKLVKTALGSSL 489
           S+  TL  +      I +       L +++
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAI 548


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query552
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 84.78
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 84.02
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 80.42
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 80.2
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
Probab=84.78  E-value=26  Score=32.88  Aligned_cols=125  Identities=14%  Similarity=0.182  Sum_probs=88.6

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHhHHhHHHHHHHHHHHhhhhhhhhccchhhhhc
Q 008831           28 AEKAKEKEELMSQKFNEFQTRLEELSSENIELKKQNATLRFDLEKQEELNESFKEVINKFYEIRQQSLEVLETSWEDKCA  107 (552)
Q Consensus        28 aEKAKEkEE~m~qkf~~f~~R~eE~~S~~~~qK~lN~aLQ~dl~~~~eq~e~~~kVI~KFyeiR~~~~e~~~~s~~eKcs  107 (552)
                      +.|.|-..-.+....+.++.-++|++..|.-.....+.|+.+++.+-.+++.=         -|.++. ..+        
T Consensus        29 ~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qE---------r~~r~q-~se--------   90 (168)
T 3o0z_A           29 AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAE---------RRDRGH-DSE--------   90 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH-HHH--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH-HHH--------
Confidence            45667777788889999999999999999999999999999999999888721         111111 000        


Q ss_pred             hhccccccccccCCcchHHHHHHHHHHHHHHHHhHHHHHhhhhhhHHHHHHhHHhHHHHHHhhhhhHHHHHHHHHHHHHh
Q 008831          108 CLLLDSAEMWSFNDTSTSKYISALEDELEKTRSSVENLQSKLRMGLEIENHLKKSVRELEKKIIHSDKFISNAIAELRLC  187 (552)
Q Consensus       108 ~LL~DS~e~WSfn~tStskyIsALEeEle~lrasi~~LQskLRvGLEIEnHLkk~vr~LEKkqi~~dk~i~Ngis~Lq~~  187 (552)
                       ++.           -+..-|.+|++|++.++....+++..-       ++|+.++..|||...-+.==+.=.|-.+|+-
T Consensus        91 -~~~-----------elq~ri~~L~~El~~~k~~~~k~~~e~-------r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~  151 (168)
T 3o0z_A           91 -MIG-----------DLQARITSLQEEVKHLKHNLEKVEGER-------KEAQDMLNHSEKEKNNLEIDLNYKLKSLQQR  151 (168)
T ss_dssp             -HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence             000           022368888888888888887776654       3689999999999876653333455666655


Q ss_pred             hh
Q 008831          188 HS  189 (552)
Q Consensus       188 h~  189 (552)
                      |-
T Consensus       152 ~e  153 (168)
T 3o0z_A          152 LE  153 (168)
T ss_dssp             HH
T ss_pred             HH
Confidence            43



>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00