Citrus Sinensis ID: 008842

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-
MANFLNNLFLLFMFIIIIIITPSQSTPTLNFISCLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESETAWVQGGATLGETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNREAMGEDVFWAIRGGGGGVWGIVYAWKIKLLQVPRVVSGFVLSRPGSKQHVAKLVNKWQHVAPNLTDDFYLSCFIGAGLPETKSIGLSATFKGFYLGPKHEALTILNNFFPELRVSEKDGKEMSWIESILFFSGLSNGSTISDLKKRYNQDKNYFKAKSDYVRTPISVTGIRTALEILDKEPKGYVIFDPYGGIMHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDNDKSNGYIDWIRAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFPSKDAVEIARVWGEKYFLKNYDRLVKAKTIIDPNNIFSNQQGIPPTFSLGFKGKSSE
ccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccccccccccccccccccccccccccHHHHHHHcccccccccccccccEEEEcccHHHHHHHHHHHHHcccEEEEEccccccccccccccccccEEEEEccccccEEEEccccEEEEcccccHHHHHHHHHHccccEEEccccccccccccccccccHHHHHHHccccccEEEEEEEEEEcccEEEccccccccEEEEcccccccEEEEEEEEEEEEEcccEEEEEEEcccccHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccEEEEEEEEEcccHHHHHHHHHHHcccccccccccccccHHHHHHHHccccccccHHHHccccccccccEEEEcccccccccHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccEEEcccccccccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc
cccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccEEEEccccccHHHHHHHHHHccccccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEcccccccccEEEEcccccEEEEEcHHcccEEEEcccccEEEEcccHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccEEEEEEEEccccEEcHHHHcccHHEEEEccccccEEEEEEEEEEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccccccEEEEEEEEEEEcccHHHHHHHHHHHccHccccHccHHHHHHHHHHHHHccccccccHHHHHcccccccHHHccccccccccccHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccccccccccccccc
MANFLNNLFLLFMFIIIIIitpsqstptlnfisclnrynvnnftlfpniqndhseeanyNYYELLNFSiqnlrftdssvpkpvaiiLPESIDQLANSVLCcrnesmelrvrcgghsyegtssfssdgaSFVILDMSNLNKISVDLESETAWVQGGATLGETYSAISeasnthgfsagscptvgvgghiggggFGLLSRKYGLAADNVVDALLMDANGRLLNREAMGEDVFWAIRGGGGGVWGIVYAWKIKLlqvprvvsgfvlsrpgskQHVAKLVNKWQhvapnltddfylscfigaglpetksiglsatfkgfylgpkHEALTILNnffpelrvsekdgkemSWIESILFFsglsngstiSDLKKRYNqdknyfkaksdyvrtpisVTGIRTALEildkepkgyvifdpyggimhkigseeiafphrngnlFTIQYIVAWygedndksngYIDWIRAFYNAmtpfvswgpraayinymdidlgemelinssfpskdAVEIARVWGEKYFLKNYDRLVKaktiidpnnifsnqqgipptfslgfkgksse
MANFLNNLFLLFMFIIIIIITPSQSTPTLNFISCLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESETAWVQGGATLGETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNREAMGEDVFWAIRGGGGGVWGIVYAWKIKLLQVPRVVSGFVLSRPGSKQHVAKLVNKWQHVAPNLTDDFYLSCFIGAGLPETKSIGLSATFKGFYLGPKHEALTILNNFFPELRVSEKDGKEMSWIESILFfsglsngstisDLKKRYNQDKNyfkaksdyvrtpiSVTGIRTaleildkepkGYVIFDPYGGIMHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDNDKSNGYIDWIRAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFPSKDAVEIARVWGEKYFLKNYDRLVKAKTIIDpnnifsnqqgipptfslgfkgksse
MAnflnnlfllfmfiiiiiiTPSQSTPTLNFISCLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESETAWVQGGATLGETYSAISEASNTHGFSAGSCPTVgvgghiggggfgLLSRKYGLAADNVVDALLMDANGRLLNREAMGEDVFWAIRgggggVWGIVYAWKIKLLQVPRVVSGFVLSRPGSKQHVAKLVNKWQHVAPNLTDDFYLSCFIGAGLPETKSIGLSATFKGFYLGPKHEALTILNNFFPELRVSEKDGKEMSWIESILFFSGLSNGSTISDLKKRYNQDKNYFKAKSDYVRTPISVTGIRTALEILDKEPKGYVIFDPYGGIMHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDNDKSNGYIDWIRAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFPSKDAVEIARVWGEKYFLKNYDRLVKAKTIIDPNNIFSNQQGIPPTFSLGFKGKSSE
***FLNNLFLLFMFIIIIIITPSQSTPTLNFISCLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESETAWVQGGATLGETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNREAMGEDVFWAI******VWGIVYAWKIKLLQVPRVVSGFVLSRPGSKQHVAKLVNKWQHVAPNLTDDFYLSCFIGAGLPETKSIGLSATFKGFYLGPKHEALTILNNFFPELRVSEKDGKEMSWIESILFFSGLSNGSTISDLKKRYNQDKNYFKAKSDYVRTPISVTGIRTALEILDKEPKGYVIFDPYGGIMHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDNDKSNGYIDWIRAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFPSKDAVEIARVWGEKYFLKNYDRLVKAKTIIDPNNIFSNQQ****************
*****NN*FLLFMFIIIIIITPSQSTPTLNFISCLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESETAWVQGGATLGETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNREAMGEDVFWAIRGGGGGVWGIVYAWKIKLLQVPRVVSGFVLSRPGSKQHVAKLVNKWQHVAPNLTDDFYLSCFIGAGLPETKSIGLSATFKGFYLGPKHEALTILNNFFPELRVSEKDGKEMSWIESILFFSGLSNGSTISDLKKRYNQDKNYFKAKSDYVRTPISVTGIRTALEILDKEPKGYVIFDPYGGIMHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDNDKSNGYIDWIRAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFPSKDAVEIARVWGEKYFLKNYDRLVKAKTIIDPNNIFSNQQGIP*************
MANFLNNLFLLFMFIIIIIITPSQSTPTLNFISCLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESETAWVQGGATLGETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNREAMGEDVFWAIRGGGGGVWGIVYAWKIKLLQVPRVVSGFVLSRPGSKQHVAKLVNKWQHVAPNLTDDFYLSCFIGAGLPETKSIGLSATFKGFYLGPKHEALTILNNFFPELRVSEKDGKEMSWIESILFFSGLSNGSTISDLKKRYNQDKNYFKAKSDYVRTPISVTGIRTALEILDKEPKGYVIFDPYGGIMHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDNDKSNGYIDWIRAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFPSKDAVEIARVWGEKYFLKNYDRLVKAKTIIDPNNIFSNQQGIPPTFSLGFKGKSSE
*ANFLNNLFLLFMFIIIIIITPSQSTPTLNFISCLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESETAWVQGGATLGETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNREAMGEDVFWAIRGGGGGVWGIVYAWKIKLLQVPRVVSGFVLSRPGSKQHVAKLVNKWQHVAPNLTDDFYLSCFIGAGLPETKSIGLSATFKGFYLGPKHEALTILNNFFPELRVSEKDGKEMSWIESILFFSGLSNGSTISDLKKRYNQDKNYFKAKSDYVRTPISVTGIRTALEILDKEPKGYVIFDPYGGIMHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDNDKSNGYIDWIRAFYNAMTPFVSWGPRAAYINYMDIDLGEMELI**S*PSKDAVEIARVWGEKYFLKNYDRLVKAKTIIDPNNIFSNQQGIPPT***********
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MANFLNNLFLLFMFIIIIIITPSQSTPTLNFISCLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESETAWVQGGATLGETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNREAMGEDVFWAIRGGGGGVWGIVYAWKIKLLQVPRVVSGFVLSRPGSKQHVAKLVNKWQHVAPNLTDDFYLSCFIGAGLPETKSIGLSATFKGFYLGPKHEALTILNNFFPELRVSEKDGKEMSWIESILFFSGLSNGSTISDLKKRYNQDKNYFKAKSDYVRTPISVTGIRTALEILDKEPKGYVIFDPYGGIMHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDNDKSNGYIDWIRAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFPSKDAVEIARVWGEKYFLKNYDRLVKAKTIIDPNNIFSNQQGIPPTFSLGFKGKSSE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query551 2.2.26 [Sep-21-2011]
P93479535 Reticuline oxidase OS=Pap N/A no 0.927 0.955 0.468 1e-125
P30986538 Reticuline oxidase OS=Esc N/A no 0.911 0.933 0.477 1e-124
A6P6W0545 Cannabidiolic acid syntha N/A no 0.934 0.944 0.418 1e-111
A6P6W1545 Cannabidiolic acid syntha N/A no 0.932 0.943 0.417 1e-110
A6P6V9544 Cannabidiolic acid syntha N/A no 0.907 0.919 0.416 1e-106
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.931 0.941 0.409 1e-106
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.931 0.941 0.415 1e-106
Q9SVG4570 Reticuline oxidase-like p no no 0.871 0.842 0.403 1e-84
O06997447 Uncharacterized FAD-linke yes no 0.740 0.912 0.270 7e-25
Q796Y5451 Uncharacterized FAD-linke no no 0.735 0.898 0.264 2e-19
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function desciption
 Score =  449 bits (1155), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 249/531 (46%), Positives = 359/531 (67%), Gaps = 20/531 (3%)

Query: 11  LFMFIIIIIITPSQSTPTLNFIS-CLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSI 69
            F+FI+++           N +S CLN + V+NFT         S + N +Y++LL+ S+
Sbjct: 10  FFLFIVLLQTCVRGGDVNDNLLSSCLNSHGVHNFTTL-------STDTNSDYFKLLHASM 62

Query: 70  QNLRFTDSSVPKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGAS 129
           QN  F   +V KP  I++P S ++L+++V CC  ES  +R+R GGHSYEG S +++D   
Sbjct: 63  QNPLFAKPTVSKPSFIVMPGSKEELSSTVHCCTRESWTIRLRSGGHSYEGLS-YTAD-TP 120

Query: 130 FVILDMSNLNKISVDLESETAWVQGGATLGETYSAISEASNTHGFSAGSCPTVGVGGHIG 189
           FVI+DM NLN+IS+D+ SETAWV+ GATLGE Y AI+++++T GF+AG CPTVG GGHI 
Sbjct: 121 FVIVDMMNLNRISIDVLSETAWVESGATLGELYYAIAQSTDTLGFTAGWCPTVGSGGHIS 180

Query: 190 GGGFGLLSRKYGLAADNVVDALLMDANGRLLNREAMGEDVFWAIRGGGGGVWGIVYAWKI 249
           GGGFG++SRKYGLAADNVVDA+L+D+NG +L+RE MG+DVFWAIRGGGGGVWG +YAWKI
Sbjct: 181 GGGFGMMSRKYGLAADNVVDAILIDSNGAILDREKMGDDVFWAIRGGGGGVWGAIYAWKI 240

Query: 250 KLLQVPRVVSGFVLSRPGSKQHVAKLVNKWQHVAPNLTDDFYLSCFIGAGLPETKSIGLS 309
           KLL VP  ++ F +++    +  + L++KWQ+VA  L +DF +S   G    +   +   
Sbjct: 241 KLLPVPEKLTVFRVTKNVGIEDASSLLHKWQYVADELDEDFTVSVLGGVNGNDAWLM--- 297

Query: 310 ATFKGFYLGPKHEALTILNNFFPELRVSEKDGKEMSWIESILFFSGLSNGSTISDLKKRY 369
             F G +LG K  A TI++  FPEL + +K+ +EMSW ES+ F SGL    TIS+L  R+
Sbjct: 298 --FLGLHLGRKDAAKTIIDEKFPELGLVDKEFQEMSWGESMAFLSGL---DTISELNNRF 352

Query: 370 NQ-DKNYFKAKSDYVRTPISVTGIRTALEILDKEPKGYVIFDPYGGIMHKIGSEEIAFPH 428
            + D+  FK K D+ +  + +   R ALE+L ++P G++  + +GG M +I ++   FPH
Sbjct: 353 LKFDERAFKTKVDFTKVSVPLNVFRHALEMLSEQPGGFIALNGFGGKMSEISTDFTPFPH 412

Query: 429 RNGNLFTIQYIVAWYGEDNDKSNGYIDWIRAFYNAMTPFVSWGPRAAYINYMDIDLGEME 488
           R G     +YI+AW  ++  K   + +W+  FY+ + PFVS  PR  Y+N++D+D+G ++
Sbjct: 413 RKGTKLMFEYIIAWNQDEESKIGEFSEWLAKFYDYLEPFVSKEPRVGYVNHIDLDIGGID 472

Query: 489 LINSSFPSKDAVEIARVWGEKYFLKNYDRLVKAKTIIDPNNIFSNQQGIPP 539
             N S  + +AVEIAR WGE+YF  NY+RLVKAKT+IDPNN+F++ Q IPP
Sbjct: 473 WRNKS-STTNAVEIARNWGERYFSSNYERLVKAKTLIDPNNVFNHPQSIPP 522
Essential to the formation of benzophenanthridine alkaloids in the response of plants to pathogenic attack. Catalyzes the stereospecific conversion of the N-methyl moiety of (S)-reticuline into the berberine bridge carbon of (S)-scoulerine.
Papaver somniferum (taxid: 3469)
EC: 1EC: .EC: 2EC: 1EC: .EC: 3EC: .EC: 3
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query551
255586578546 d-lactate dehydrogenase, putative [Ricin 0.969 0.978 0.699 0.0
356574801550 PREDICTED: reticuline oxidase-like [Glyc 0.916 0.918 0.704 0.0
224128001537 predicted protein [Populus trichocarpa] 0.945 0.970 0.705 0.0
225459912540 PREDICTED: reticuline oxidase-like [Viti 0.980 1.0 0.666 0.0
356533725550 PREDICTED: reticuline oxidase-like [Glyc 0.921 0.923 0.686 0.0
357504109548 Reticuline oxidase [Medicago truncatula] 0.914 0.919 0.692 0.0
359493521 712 PREDICTED: LOW QUALITY PROTEIN: reticuli 0.981 0.759 0.64 0.0
328497229567 berberine bridge enzyme-like protein [Ni 0.950 0.924 0.630 1e-179
297734732 790 unnamed protein product [Vitis vinifera] 0.907 0.632 0.601 1e-175
328497227562 berberine bridge enzyme-like protein [Ni 0.912 0.895 0.590 1e-165
>gi|255586578|ref|XP_002533924.1| d-lactate dehydrogenase, putative [Ricinus communis] gi|223526119|gb|EEF28466.1| d-lactate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/539 (69%), Positives = 449/539 (83%), Gaps = 5/539 (0%)

Query: 1   MANFLNNLFLLFMFIIIIIITPSQSTPTLNFISCLNRYNVNNFTLFPNIQNDHSEEANYN 60
           M NF   +       +  ++ PS S     F SCL +  ++NFT FP+ +ND ++     
Sbjct: 1   MVNFPARILSSTPIFLSFLLAPSLSVIANQFTSCLTQNLISNFTTFPSSKNDSTD----- 55

Query: 61  YYELLNFSIQNLRFTDSSVPKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGT 120
           YY LL FSIQNLRF D  +PKP+AI++PE++++L  +V CCR   +E+RVRCGGHSYEGT
Sbjct: 56  YYNLLEFSIQNLRFADLEMPKPLAIVIPETVEELVKTVTCCREAFLEIRVRCGGHSYEGT 115

Query: 121 SSFSSDGASFVILDMSNLNKISVDLESETAWVQGGATLGETYSAISEASNTHGFSAGSCP 180
           S  +SDGA+FV++DM NLNK+SVDLE++ A V+GGATLGETY+AI+EAS  HGFSAGSCP
Sbjct: 116 SYVASDGATFVVIDMMNLNKVSVDLEAKMAVVEGGATLGETYAAIAEASGVHGFSAGSCP 175

Query: 181 TVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNREAMGEDVFWAIRGGGGGV 240
           TVGVGGHIGGGGFGLLSRKYGLAADNVVDALL+DANGRLL+R+ MGEDVFWAIRGGGGGV
Sbjct: 176 TVGVGGHIGGGGFGLLSRKYGLAADNVVDALLVDANGRLLDRKEMGEDVFWAIRGGGGGV 235

Query: 241 WGIVYAWKIKLLQVPRVVSGFVLSRPGSKQHVAKLVNKWQHVAPNLTDDFYLSCFIGAGL 300
           WGI+YAWKIKLL+VPRVV+GF++SRPG+K HVAKLVNKWQHVAP L DDFYLSCF+GAGL
Sbjct: 236 WGILYAWKIKLLKVPRVVTGFIVSRPGTKGHVAKLVNKWQHVAPGLDDDFYLSCFVGAGL 295

Query: 301 PETKSIGLSATFKGFYLGPKHEALTILNNFFPELRVSEKDGKEMSWIESILFFSGLSNGS 360
           PE K+ G+SATFKGFYLGP+ EA++ILN  FPEL + E+D KEMSWIES+LFFSGLSNGS
Sbjct: 296 PEAKTTGISATFKGFYLGPRSEAVSILNKNFPELGIVEEDCKEMSWIESVLFFSGLSNGS 355

Query: 361 TISDLKKRYNQDKNYFKAKSDYVRTPISVTGIRTALEILDKEPKGYVIFDPYGGIMHKIG 420
           T+SDLK R+ Q K+YFKAKSDYV++ IS  GI+ AL+IL KEPKGYVI DPYGG+MH I 
Sbjct: 356 TVSDLKNRHLQGKSYFKAKSDYVKSEISSAGIKIALDILQKEPKGYVILDPYGGVMHNIS 415

Query: 421 SEEIAFPHRNGNLFTIQYIVAWYGEDNDKSNGYIDWIRAFYNAMTPFVSWGPRAAYINYM 480
           SE IAFPHRNGNLFTIQY+V W  +D +KSN YIDWIR FY  MTPFVS GPRAAYINYM
Sbjct: 416 SEAIAFPHRNGNLFTIQYLVEWKEKDKNKSNVYIDWIREFYYLMTPFVSRGPRAAYINYM 475

Query: 481 DIDLGEMELINSSFPSKDAVEIARVWGEKYFLKNYDRLVKAKTIIDPNNIFSNQQGIPP 539
           D D+G M +I  S PS+DAVEIARVWGEKYFL+N+DRLV+AKT+IDP+N+F+N+Q IPP
Sbjct: 476 DFDIGAMGMIKKSVPSEDAVEIARVWGEKYFLRNFDRLVRAKTLIDPDNVFNNEQSIPP 534

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356574801|ref|XP_003555533.1| PREDICTED: reticuline oxidase-like [Glycine max] Back     alignment and taxonomy information
>gi|224128001|ref|XP_002329230.1| predicted protein [Populus trichocarpa] gi|222871011|gb|EEF08142.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225459912|ref|XP_002264336.1| PREDICTED: reticuline oxidase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356533725|ref|XP_003535410.1| PREDICTED: reticuline oxidase-like [Glycine max] Back     alignment and taxonomy information
>gi|357504109|ref|XP_003622343.1| Reticuline oxidase [Medicago truncatula] gi|355497358|gb|AES78561.1| Reticuline oxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|359493521|ref|XP_003634619.1| PREDICTED: LOW QUALITY PROTEIN: reticuline oxidase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|328497229|dbj|BAK18781.1| berberine bridge enzyme-like protein [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|297734732|emb|CBI16966.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|328497227|dbj|BAK18780.1| berberine bridge enzyme-like protein [Nicotiana tabacum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query551
TAIR|locus:2158720541 AT5G44380 [Arabidopsis thalian 0.920 0.937 0.411 1.6e-102
TAIR|locus:2158740537 AT5G44400 [Arabidopsis thalian 0.921 0.945 0.393 2.1e-100
TAIR|locus:2133044530 AT4G20860 [Arabidopsis thalian 0.896 0.932 0.406 1e-98
TAIR|locus:2158730542 AT5G44390 [Arabidopsis thalian 0.900 0.915 0.406 1.2e-97
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.905 0.937 0.399 2e-97
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.907 0.936 0.403 4.1e-97
TAIR|locus:2163411535 AT5G44410 [Arabidopsis thalian 0.894 0.921 0.396 2.9e-96
TAIR|locus:2163441533 AT5G44440 [Arabidopsis thalian 0.892 0.923 0.386 4.2e-95
TAIR|locus:2204614531 AT1G30710 [Arabidopsis thalian 0.909 0.943 0.379 1.6e-93
TAIR|locus:2158700532 AT5G44360 [Arabidopsis thalian 0.907 0.939 0.380 4.3e-93
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
 Identities = 216/525 (41%), Positives = 311/525 (59%)

Query:    21 TPSQSTPTLN--FISCLNRYNVNNFTLFPNIQNDHSEEANYNYY-ELLNFSIQNLRFTDS 77
             TP+ S+ ++   FI+C+ R   N    FP  +   +   N + + ++L  + QNL+F   
Sbjct:    26 TPTSSSASIQDQFINCVKR---NTHVSFPLEKTLFTPAKNVSLFNQVLESTAQNLQFLAK 82

Query:    78 SVPKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSN 137
             S+PKP  I  P    Q+  S++C +   +  RVR GGH +E  S  S     F++LD+S 
Sbjct:    83 SMPKPGFIFRPIHQSQVQASIICSKKLGIHFRVRSGGHDFEALSYVSRIEKPFILLDLSK 142

Query:   138 LNKISVDLESETAWVQGGATLGETYSAISEASNTHGFSAGSCPTVXXXXXXXXXXXXLLS 197
             L +I+VD+ES +AWVQ GATLGE Y  I+E S  HGF AG C +V             L 
Sbjct:   143 LKQINVDIESNSAWVQPGATLGELYYRIAEKSKIHGFPAGLCTSVGIGGYMTGGGYGTLM 202

Query:   198 RKYGLAADNVVDALLMDANGRLLNREAMGEDVFWAIRXXXXXVWGIVYAWKIKLLQVPRV 257
             RKYGLA DNV+D  ++DANG+LL+R AMGED+FWAIR      +GIV AWKIKL+ VP+ 
Sbjct:   203 RKYGLAGDNVLDVKMVDANGKLLDRAAMGEDLFWAIRGGGGASFGIVLAWKIKLVPVPKT 262

Query:   258 VSGFVLSRPGSKQHVAKLVNKWQHVAPNLTDDFYLSCFI-GAGLPETKSIGLSATFKGFY 316
             V+ F +++   +    K ++KWQ ++  + ++ ++   +  AG    K++ +  T+ G +
Sbjct:   263 VTVFTVTKTLEQDARLKTISKWQQISSKIIEEIHIRVVLRAAGNDGNKTVTM--TYLGQF 320

Query:   317 LGPKHEALTILNNFFPELRVSEKDGKEMSWIESILFFSGLSNGSTISDLKKRYNQ-DKNY 375
             LG K   L ++   FPEL +++KD  EMSWIE+ LF  G   GS I  L +  +   K+Y
Sbjct:   321 LGEKGTLLKVMEKAFPELGLTQKDCTEMSWIEAALFHGGFPTGSPIEILLQLKSPLGKDY 380

Query:   376 FKAKSDYVRTPISVTGIRTALEILDKEPKGYVIFDPYGGIMHKIGSEEIAFPHRNGNLFT 435
             FKA SD+V+ PI V G++   + L +    ++ + PYGG+M KI    I FPHRNG LF 
Sbjct:   381 FKATSDFVKEPIPVIGLKGIFKRLIEGNTTFLNWTPYGGMMSKIPESAIPFPHRNGTLFK 440

Query:   436 IQYIVAWYGEDNDK-SNGYIDWIRAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSF 494
             I Y   W   +NDK S+  I+WI+  YN M P+VS  PR AY+NY D+D G+    N + 
Sbjct:   441 ILYYANWL--ENDKTSSRKINWIKEIYNYMAPYVSSNPRQAYVNYRDLDFGQ----NKNN 494

Query:   495 PSKDAVEIARVWGEKYFLKNYDRLVKAKTIIDPNNIFSNQQGIPP 539
                + +E A++WG KYF  N+DRLVK KT +DP N F ++Q IPP
Sbjct:   495 AKVNFIE-AKIWGPKYFKGNFDRLVKIKTKVDPENFFRHEQSIPP 538
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005618 "cell wall" evidence=IDA
GO:0006979 "response to oxidative stress" evidence=IEP
GO:0009506 "plasmodesma" evidence=IDA
GO:0010167 "response to nitrate" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
TAIR|locus:2158740 AT5G44400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133044 AT4G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158730 AT5G44390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163411 AT5G44410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163441 AT5G44440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204614 AT1G30710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158700 AT5G44360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.21.3LOW CONFIDENCE prediction!
3rd Layer1.21.3.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.125.178.1
hypothetical protein (489 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query551
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 1e-32
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 5e-29
pfam0803145 pfam08031, BBE, Berberine and berberine like 1e-14
TIGR00387413 TIGR00387, glcD, glycolate oxidase, subunit GlcD 1e-08
PRK11230499 PRK11230, PRK11230, glycolate oxidase subunit GlcD 6e-08
TIGR01678438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 3e-05
PLN02805555 PLN02805, PLN02805, D-lactate dehydrogenase [cytoc 0.002
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score =  121 bits (305), Expect = 1e-32
 Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 5/141 (3%)

Query: 82  PVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKI 141
           P A++ PES +++A  V       + + VR GG S  G +  +      V+LD+S LN I
Sbjct: 1   PAAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDAVLTGG----VVLDLSRLNGI 56

Query: 142 -SVDLESETAWVQGGATLGETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKY 200
             +D E  TA V+ G TLG+   A++      G   GS     VGG I   G G  S +Y
Sbjct: 57  LEIDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSERY 116

Query: 201 GLAADNVVDALLMDANGRLLN 221
           GL  DNV+   ++ A+G ++ 
Sbjct: 117 GLTRDNVLSLEVVLADGEVVR 137

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD Back     alignment and domain information
>gnl|CDD|183043 PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 551
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 100.0
PLN02441525 cytokinin dehydrogenase 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
PLN02465573 L-galactono-1,4-lactone dehydrogenase 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 100.0
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.97
KOG1231505 consensus Proteins containing the FAD binding doma 99.97
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.97
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.95
PRK11183564 D-lactate dehydrogenase; Provisional 99.91
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.91
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.86
KOG1232511 consensus Proteins containing the FAD binding doma 99.85
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.85
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.85
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.84
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.84
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.8
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.79
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.7
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.64
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.62
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.62
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.61
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.58
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.48
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.46
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.08
PLN00107257 FAD-dependent oxidoreductase; Provisional 98.29
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 96.14
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 94.67
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 94.4
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 94.24
PRK09799258 putative oxidoreductase; Provisional 94.16
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 94.07
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 92.92
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 88.82
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 86.02
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 82.43
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information 
Probab=100.00  E-value=5.3e-40  Score=355.29  Aligned_cols=206  Identities=21%  Similarity=0.262  Sum_probs=174.0

Q ss_pred             CcccHHhHHhhcCCCCcccCCCCCCCCCCCCCcCcHHHhhhcccccccCCCCCCCceEEEeeCCHHHHHHHHHHHHhCCC
Q 008842           27 PTLNFISCLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPESIDQLANSVLCCRNESM  106 (551)
Q Consensus        27 ~~~~~~~cl~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~p~s~~dv~~~v~~a~~~~~  106 (551)
                      |+++..+|.+..  ++|++            ++.|.+          |.....+.|.+|++|+|++||+++|++|+++++
T Consensus         1 ~~~~~~~~~~~~--~~~~~------------~~~w~n----------Wag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~   56 (557)
T TIGR01677         1 PPDDPVRCVSGG--ANCTV------------SNAYGA----------FPDRSTCRAANVAYPKTEAELVSVVAAATAAGR   56 (557)
T ss_pred             CCCCCeecccCC--CCcee------------ecchhh----------cCCcccCCCCEEEecCCHHHHHHHHHHHHHCCC
Confidence            456678896443  36887            566654          666667899999999999999999999999999


Q ss_pred             eEEEEc-CCCCCCCCccccC-CCCeEEEEEcCCCCc-eEEeCCCCEEEEecCCCHHHHHHHHHHcCCcccccCC-CCCcc
Q 008842          107 ELRVRC-GGHSYEGTSSFSS-DGASFVILDMSNLNK-ISVDLESETAWVQGGATLGETYSAISEASNTHGFSAG-SCPTV  182 (551)
Q Consensus       107 ~~~vrg-gGhs~~g~~~~~~-~g~~~vvIdl~~l~~-i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g-~~~~v  182 (551)
                      +|+|+| +||++.+.+.... +|  +++|||++||+ +++|.++.+|+|+||+++.+|.+.|.++|  +.++.+ .+..+
T Consensus        57 ~v~v~GG~gHs~~~~a~t~~~~g--gvvIdL~~Ln~il~iD~~~~tVtV~AG~~l~~L~~~L~~~G--lal~~~~~~~~~  132 (557)
T TIGR01677        57 KMKVVTRYSHSIPKLACPDGSDG--ALLISTKRLNHVVAVDATAMTVTVESGMSLRELIVEAEKAG--LALPYAPYWWGL  132 (557)
T ss_pred             eEEEEeCCCCCcCcccccCCCCC--EEEEEcccCCCCEEEeCCCCEEEECCCCcHHHHHHHHHHcC--CEeccCCCCCCe
Confidence            999996 6999987665521 12  59999999999 59999999999999999999999999988  445443 44567


Q ss_pred             ccccccccCCccccc-cccCccccceeeeEEEecCC------cEEEcc-CCCchhHHHhhcCCCCcceeeEEEEEeeeec
Q 008842          183 GVGGHIGGGGFGLLS-RKYGLAADNVVDALLMDANG------RLLNRE-AMGEDVFWAIRGGGGGVWGIVYAWKIKLLQV  254 (551)
Q Consensus       183 gvgG~~~~gg~G~~s-~~~G~~~D~v~~~~vV~~~G------~i~~~~-~~~~dLf~a~rG~g~g~fGiVt~~~~~l~p~  254 (551)
                      +|||.+++|+||... ++||..+|+|++++||++||      ++++++ .+++|||||+||+ +|+|||||++|||++|.
T Consensus       133 TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s~~~~~dLf~a~rgs-lG~lGVVtevTL~~~P~  211 (557)
T TIGR01677       133 TVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILSEGDTPNEFNAAKVS-LGVLGVISQVTLALQPM  211 (557)
T ss_pred             EeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeCCCCCHHHHHhhccC-CCccEeeeEEEEEEEcc
Confidence            999999999999766 68999999999999999998      788887 5789999999999 79999999999999999


Q ss_pred             CceEEEE
Q 008842          255 PRVVSGF  261 (551)
Q Consensus       255 p~~~~~~  261 (551)
                      ++....+
T Consensus       212 ~~~~~~~  218 (557)
T TIGR01677       212 FKRSVTY  218 (557)
T ss_pred             ccceEEE
Confidence            8754443

This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query551
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 1e-125
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-125
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-125
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-125
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 1e-124
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 1e-124
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 1e-124
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-104
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 1e-97
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 2e-92
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 2e-19
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 8e-18
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 5e-17
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 5e-14
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 1e-13
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 6e-13
1zr6_A503 The Crystal Structure Of An Acremonium Strictum Glu 9e-13
3hsu_A503 Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-H 9e-12
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure 
Iteration: 1

 Score =  446 bits (1148), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/521 (44%), Positives = 331/521 (63%), Gaps = 19/521 (3%)
Query: 30  NFISCLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPE 89
           + +SCL    V N T+F       S +++ ++   L+ SIQN  F +S + KP AIILP 
Sbjct: 7   DLLSCLTFNGVRNHTVF-------SADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPG 59
Query: 90  SIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESET 149
           S ++L+N++ C R  S  +R+R GGHSYEG S ++SD   F+++D+ NLN++S+DLESET
Sbjct: 60  SKEELSNTIRCIRKGSWTIRLRSGGHSYEGLS-YTSD-TPFILIDLMNLNRVSIDLESET 117
Query: 150 AWVQGGATLGETYSAISEASNTHGFSAGSCPTVXXXXXXXXXXXXLLSRKYGLAADNVVD 209
           AWV+ G+TLGE Y AI+E+S+  GF+AG CPTV            ++SRKYGLAADNVVD
Sbjct: 118 AWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGAISGGGFGMMSRKYGLAADNVVD 177
Query: 210 ALLMDANGRLLNREAMGEDVFWAIRXXXXXVWGIVYAWKIKLLQVPRVVSGFVLSRPGSK 269
           A+L+DANG +L+R+AMGEDVFWAIR     VWG +YAWKIKLL VP  V+ F +++  + 
Sbjct: 178 AILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAI 237
Query: 270 QHVAKLVNKWQHVAPNLTDDFYLSCFIGAGLPETKSIGLSATFKGFYLGPKHEALTILNN 329
                L++KWQ VA  L +DF LS   GA   + K + L  T  GF+ G K  A +  + 
Sbjct: 238 DEATSLLHKWQFVAEELEEDFTLSVLGGA---DEKQVWL--TMLGFHFGLKTVAKSTFDL 292
Query: 330 FFPELRVSEKDGKEMSWIESILFFSGLSNGSTISDLKKRYNQ-DKNYFKAKSDYVRTPIS 388
            FPEL + E+D  EMSW ES  + +GL    T+S L  R+ + D+  FK K D  + P+ 
Sbjct: 293 LFPELGLVEEDYLEMSWGESFAYLAGL---ETVSQLNNRFLKFDERAFKTKVDLTKEPLP 349
Query: 389 VTGIRTALEILDKEPKGYVIFDPYGGIMHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDND 448
                  LE L KEP G++  + +GG M KI S+   FPHR+G    ++YIVAW   +  
Sbjct: 350 SKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQK 409
Query: 449 KSNGYIDWIRAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFPSKDAVEIARVWGE 508
           K   ++DW+   Y  M PFVS  PR  Y+N++D+DLG ++  N +  + +A+EI+R WGE
Sbjct: 410 KKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVN-NAIEISRSWGE 468
Query: 509 KYFLKNYDRLVKAKTIIDPNNIFSNQQGIPPTFSLGFKGKS 549
            YFL NY+RL++AKT+IDPNN+F++ Q IPP  +  +  K+
Sbjct: 469 SYFLSNYERLIRAKTLIDPNNVFNHPQSIPPMANFDYLEKT 509
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum Glucooligosaccharide Oxidase Reveals A Novel Flavinylation Length = 503 Back     alignment and structure
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl Fad In Glucooligosaccharide Oxidase From Acremonium Strictum Length = 503 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query551
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 0.0
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 0.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-159
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-156
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-152
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-151
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-148
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-147
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-120
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 8e-54
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 6e-43
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 3e-24
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 3e-21
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 1e-15
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 1e-13
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 1e-08
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 1e-08
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 2e-08
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 4e-08
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 6e-07
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
 Score =  555 bits (1432), Expect = 0.0
 Identities = 241/510 (47%), Positives = 334/510 (65%), Gaps = 17/510 (3%)

Query: 30  NFISCLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPE 89
           + +SCL    V N T+F         +++ ++   L+ SIQN  F +S + KP AIILP 
Sbjct: 1   DLLSCLTFNGVRNHTVFS-------ADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPG 53

Query: 90  SIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESET 149
           S ++L+N++ C R  S  +R+R GGHSYEG S  S     F+++D+ NLN++S+DLESET
Sbjct: 54  SKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTP--FILIDLMNLNRVSIDLESET 111

Query: 150 AWVQGGATLGETYSAISEASNTHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVD 209
           AWV+ G+TLGE Y AI+E+S+  GF+AG CPTVG GGHI GGGFG++SRKYGLAADNVVD
Sbjct: 112 AWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVD 171

Query: 210 ALLMDANGRLLNREAMGEDVFWAIRGGGGGVWGIVYAWKIKLLQVPRVVSGFVLSRPGSK 269
           A+L+DANG +L+R+AMGEDVFWAIRGGGGGVWG +YAWKIKLL VP  V+ F +++  + 
Sbjct: 172 AILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAI 231

Query: 270 QHVAKLVNKWQHVAPNLTDDFYLSCFIGAGLPETKSIGLSATFKGFYLGPKHEALTILNN 329
                L++KWQ VA  L +DF LS   GA         +  T  GF+ G K  A +  + 
Sbjct: 232 DEATSLLHKWQFVAEELEEDFTLSVLGGADEK-----QVWLTMLGFHFGLKTVAKSTFDL 286

Query: 330 FFPELRVSEKDGKEMSWIESILFFSGLSNGSTISDLKKRYNQDKNYFKAKSDYVRTPISV 389
            FPEL + E+D  EMSW ES  + +GL   S +++   ++  D+  FK K D  + P+  
Sbjct: 287 LFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKF--DERAFKTKVDLTKEPLPS 344

Query: 390 TGIRTALEILDKEPKGYVIFDPYGGIMHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDNDK 449
                 LE L KEP G++  + +GG M KI S+   FPHR+G    ++YIVAW   +  K
Sbjct: 345 KAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKK 404

Query: 450 SNGYIDWIRAFYNAMTPFVSWGPRAAYINYMDIDLGEMELINSSFPSKDAVEIARVWGEK 509
              ++DW+   Y  M PFVS  PR  Y+N++D+DLG ++  N +  + +A+EI+R WGE 
Sbjct: 405 KTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVN-NAIEISRSWGES 463

Query: 510 YFLKNYDRLVKAKTIIDPNNIFSNQQGIPP 539
           YFL NY+RL++AKT+IDPNN+F++ Q IPP
Sbjct: 464 YFLSNYERLIRAKTLIDPNNVFNHPQSIPP 493
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Length = 476 Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Length = 571 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query551
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.97
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.97
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.97
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.96
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.96
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.96
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.93
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.91
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.91
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.89
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.87
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.81
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.07
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.31
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 96.86
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 96.15
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 95.97
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 90.86
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 88.9
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 86.43
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 82.05
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=7.2e-87  Score=719.62  Aligned_cols=502  Identities=41%  Similarity=0.770  Sum_probs=422.1

Q ss_pred             CCcccHHhHHhhcCCCCcccCCCCCCCCCCCCCcCcHHHhhhcccccccCCCCCCCceEEEeeCCHHHHHHHHHHHHhCC
Q 008842           26 TPTLNFISCLNRYNVNNFTLFPNIQNDHSEEANYNYYELLNFSIQNLRFTDSSVPKPVAIILPESIDQLANSVLCCRNES  105 (551)
Q Consensus        26 ~~~~~~~~cl~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~p~s~~dv~~~v~~a~~~~  105 (551)
                      +|.++|.+||.....+...+ +   +.|+.|+|+.|+..+....+|.||+.....+|.+||+|+|++||+++|++|++++
T Consensus         2 ~~~~~f~~c~~~~~~~~~~~-~---~~v~~p~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~   77 (518)
T 3vte_A            2 NPRENFLKCFSKHIPNNVAN-P---KLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVG   77 (518)
T ss_dssp             CHHHHHHHHHHHHCCC-----C---CCEECTTSTTHHHHHHHTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHT
T ss_pred             ChhHHHHHHHHhcCCccCCC-C---ceEECCCCcchHHHHhhhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcC
Confidence            46778999998754322211 2   3578899999998765678899999888899999999999999999999999999


Q ss_pred             CeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCceEEeCCCCEEEEecCCCHHHHHHHHHHcCCcccccCCCCCccccc
Q 008842          106 MELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKISVDLESETAWVQGGATLGETYSAISEASNTHGFSAGSCPTVGVG  185 (551)
Q Consensus       106 ~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgvg  185 (551)
                      ++++|||||||+.|.+.....  ++++|||++||+|++|+++++++||+|++|++|+++|.++|+++.+++|.|++||||
T Consensus        78 ~~v~vrggGh~~~g~~~~~~~--~gvvIdl~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvg  155 (518)
T 3vte_A           78 LQIRTRSGGHDAEGMSYISQV--PFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVG  155 (518)
T ss_dssp             CEEEEESSCCCTTCTTTCCSS--SEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHH
T ss_pred             CcEEEECCCcCCCCCccCCCC--CeEEEECCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeee
Confidence            999999999999887753212  369999999999999999999999999999999999999887789999999999999


Q ss_pred             cccccCCccccccccCccccceeeeEEEecCCcEEEccCCCchhHHHhhcCCCCcceeeEEEEEeeeecCceEEEEEEEc
Q 008842          186 GHIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNREAMGEDVFWAIRGGGGGVWGIVYAWKIKLLQVPRVVSGFVLSR  265 (551)
Q Consensus       186 G~~~~gg~G~~s~~~G~~~D~v~~~~vV~~~G~i~~~~~~~~dLf~a~rG~g~g~fGiVt~~~~~l~p~p~~~~~~~~~~  265 (551)
                      |+++|||+|+++++||+++|+|+++|||++||++++.+.+++|||||+||||+|+|||||+++|||+|.|+.++.|.+.+
T Consensus       156 G~~~gGg~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~  235 (518)
T 3vte_A          156 GHFSGGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKK  235 (518)
T ss_dssp             HHHHTCCCCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEE
T ss_pred             eeeCCCCCccccCCCCchhheEEEEEEEccCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEe
Confidence            99999999999999999999999999999999999765568999999999867899999999999999999888888776


Q ss_pred             CCCHhHHHHHHHHHHHHCCCCCccceeEEEEecCCCC--c--CCcceEEEEEEEeeCChHHHHHHhhhhCCCCCCCcCCc
Q 008842          266 PGSKQHVAKLVNKWQHVAPNLTDDFYLSCFIGAGLPE--T--KSIGLSATFKGFYLGPKHEALTILNNFFPELRVSEKDG  341 (551)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~--~~~~~~~~~~g~~~g~~~~~~~~l~~~~~~l~~~~~~~  341 (551)
                      ..+.+++.+++.+||++.+.+|+++.+.+.+....+.  .  ....+.+.+.++|.|+.+++.+.|.+.+++++....++
T Consensus       236 ~~~~~~~~~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~  315 (518)
T 3vte_A          236 NMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDC  315 (518)
T ss_dssp             CCCHHHHHHHHHHHHHHGGGSCTTEEEEEEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGE
T ss_pred             cCCHHHHHHHHHHHHHHHHcCCHhHeEEEEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccce
Confidence            6566788999999999999999999888766532110  1  11235678889999999999888988888887666778


Q ss_pred             eeecHHHHHHHhcCCCCC-Cc---hhhhccccCCCCcccccccccccCCCCHHHHHHHHHHHhcC--CceEEEEeecCCc
Q 008842          342 KEMSWIESILFFSGLSNG-ST---ISDLKKRYNQDKNYFKAKSDYVRTPISVTGIRTALEILDKE--PKGYVIFDPYGGI  415 (551)
Q Consensus       342 ~~~~~~~~~~~~~~~~~g-~~---~~~~~~~~~~~~~~f~~~s~~~~~~~~~~~i~~~~~~~~~~--p~~~~~~~~~gGa  415 (551)
                      .+++|++.+.++++.+.+ .+   +..+.++......+||.||.++.++++.++++.+++++.+.  +.+.+.++++||+
T Consensus       316 ~~~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~GGa  395 (518)
T 3vte_A          316 KEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGI  395 (518)
T ss_dssp             EEECHHHHHHHTSSSCCC-----CGGGGGCTTCSCCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECCGG
T ss_pred             eecchhhhhhhhhcCCccCCccchhhhhccCCcCcccceeeechhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecCcc
Confidence            999999998887755332 22   33343333333457788999999899999999999988763  3578999999999


Q ss_pred             cccCCCCCCCCCCCCCCeEEEEEEEEecCCCCcchhhHHHHHHHHHHhhccCcCCCCCceeccCCCCccC-cc-ccccCC
Q 008842          416 MHKIGSEEIAFPHRNGNLFTIQYIVAWYGEDNDKSNGYIDWIRAFYNAMTPFVSWGPRAAYINYMDIDLG-EM-ELINSS  493 (551)
Q Consensus       416 i~~~~~~~tafphR~~~~~~i~~~~~w~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~Y~Ny~d~~l~-~~-~~~~~~  493 (551)
                      |++++.++|||+||++.+|.+++...|.++  +..++.++|++++++.|.|+.+..++|+|+||+|.+++ .+ .+    
T Consensus       396 ~~~v~~~~TAf~hR~~~~~~~~~~~~w~~~--~~~~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~~~----  469 (518)
T 3vte_A          396 MEEISESAIPFPHRAGIMYELWYTASWEKQ--EDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHAS----  469 (518)
T ss_dssp             GGTSCTTSSSCCCCTTCCEEEEEEEEECCT--TTHHHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCTTS----
T ss_pred             ccCCCCCCCcccccCcceEEEEEEEecCCc--chhHHHHHHHHHHHHHhccccCCCCccccccCCCcccccccccc----
Confidence            999999999999999658999999999653  33467899999999999999776678999999999886 32 11    


Q ss_pred             CCCchhHHHHHHHhhhhhcccHHHHHHHHhhcCCCCcccCCCCCCCCcc
Q 008842          494 FPSKDAVEIARVWGEKYFLKNYDRLVKAKTIIDPNNIFSNQQGIPPTFS  542 (551)
Q Consensus       494 ~~~~~~~~~~~~~~~~Y~G~n~~RL~~IK~kyDP~~vF~~~qsI~~~~~  542 (551)
                         ++.++..+.|+++|||+||+||++||+||||+|||+++|||+|...
T Consensus       470 ---~~~~~~~~~w~~~Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~p~~~  515 (518)
T 3vte_A          470 ---PNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPP  515 (518)
T ss_dssp             ---CCCHHHHHHHHHHHSSTHHHHHHHHHHHHCTTCCSCCTTCCCCCCT
T ss_pred             ---ccchhhhhhHHHHHhHhHHHHHHHHHhhcCchhcccCCCCCCCCCC
Confidence               2335667889999999999999999999999999999999999754
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 551
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 9e-16
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 4e-14
d1e8ga2268 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fung 0.002
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cholesterol oxidase
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 74.3 bits (181), Expect = 9e-16
 Identities = 20/179 (11%), Positives = 41/179 (22%), Gaps = 15/179 (8%)

Query: 80  PKPVAIILPESIDQLANSVLCCRNESMELRVRCGGHSYEGTSSFSSDGASFVI----LDM 135
                +  P++   +            ++R R     +   +         VI    +  
Sbjct: 29  LDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMAGWTPLTVEKGANVEKVILADTMTH 88

Query: 136 SNLNKISVDLESETAWVQGGATLGETYSAISE---------ASNTHGFSAGSCPTVGVGG 186
            N   ++      T     GA++    + + +         A                  
Sbjct: 89  LNGITVNTGGPVATVTAGAGASIEAIVTELQKHDLGWANLPAPGVLSIGGALAVNAHGAA 148

Query: 187 HIGGGGFGLLSRKYGLAADNVVDALLMDANGRLLNREAMGE-DVFWAIRGGGGGVWGIV 244
               G   L    YG  ++ V +   +  NG     E     D          G    +
Sbjct: 149 LPAVGQTTLPGHTYGSLSNLVTELTAVVWNGTTYALETYQRNDPRITPLLTNLGR-CFL 206
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 268 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query551
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 99.98
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.96
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.96
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.85
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.81
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.8
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 93.97
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 92.96
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 92.33
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 92.01
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 91.83
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 90.67
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 86.86
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=2.7e-37  Score=294.24  Aligned_cols=178  Identities=19%  Similarity=0.289  Sum_probs=158.2

Q ss_pred             cccccCCCCCCCceEEEeeCCHHHHHHHHHHHHhC---CCeEEEEcCCCCCCCCccccCCCCeEEEEEcCCCCce-----
Q 008842           70 QNLRFTDSSVPKPVAIILPESIDQLANSVLCCRNE---SMELRVRCGGHSYEGTSSFSSDGASFVILDMSNLNKI-----  141 (551)
Q Consensus        70 ~n~r~~~~~~~~P~~vv~p~s~~dv~~~v~~a~~~---~~~~~vrggGhs~~g~~~~~~~g~~~vvIdl~~l~~i-----  141 (551)
                      +...|.......|.+|++|+|++||+++|++|+++   ++|+++||||||+.|.+..  ++  +++|||++||+|     
T Consensus        18 ~~~d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~--~~--~ividl~~l~~i~~~~~   93 (206)
T d1w1oa2          18 ASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFA--PG--GVVVNMASLGDAAAPPR   93 (206)
T ss_dssp             TSCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCC--TT--SEEEEGGGGGCSSSSCS
T ss_pred             hEECcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCccc--CC--CEeeeccccceeeecee
Confidence            33445444557999999999999999999999997   6899999999999988775  43  399999999985     


Q ss_pred             -EEeCCCCEEEEecCCCHHHHHHHHHHcCCccccc-CCCCCccccccccccCCccccccccCccccceeeeEEEecCCcE
Q 008842          142 -SVDLESETAWVQGGATLGETYSAISEASNTHGFS-AGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLMDANGRL  219 (551)
Q Consensus       142 -~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~-~g~~~~vgvgG~~~~gg~G~~s~~~G~~~D~v~~~~vV~~~G~i  219 (551)
                       ++|++..+++||+|+++.||+++|.++|+  .++ .+....++|||++++||+|..+++||+.+|+|+++|+|++||++
T Consensus        94 ~~id~~~~~v~v~aG~~~~~l~~~l~~~Gl--~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~  171 (206)
T d1w1oa2          94 INVSADGRYVDAGGEQVWIDVLRASLARGV--APRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEM  171 (206)
T ss_dssp             EEECTTSSEEEEETTCBHHHHHHHHHTTTE--EESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCE
T ss_pred             EEEecCCCEEEEEcceehhhhhhhhhcccc--ccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcE
Confidence             79999999999999999999999999884  333 45556788999999999999999999999999999999999999


Q ss_pred             EEcc-CCCchhHHHhhcCCCCcceeeEEEEEeeeec
Q 008842          220 LNRE-AMGEDVFWAIRGGGGGVWGIVYAWKIKLLQV  254 (551)
Q Consensus       220 ~~~~-~~~~dLf~a~rG~g~g~fGiVt~~~~~l~p~  254 (551)
                      ++++ .+++|||||+||+ +|+|||||+++||++|+
T Consensus       172 ~~~s~~~~~dl~~a~~g~-~G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         172 VTCSKQLNADLFDAVLGG-LGQFGVITRARIAVEPA  206 (206)
T ss_dssp             EEEESSSSHHHHHHHTTC-TTCSEEEEEEEEEEEEC
T ss_pred             EEECCCCCHHHHHHHhhC-CCccEeEEEEEEEEEcC
Confidence            9997 6789999999998 79999999999999995
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure