Citrus Sinensis ID: 008853

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-

MEASCSLRSSKFISPPIRPPHHPLSIASTISISVIRDPNFGSSLRLVRRKNRFSIRVSSSDTLVAGSREVVSKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQRCGCTPQMGTESFASHLVHLQTSCTTTRTPLSPTHNPKEKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYAPLLN

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccEEccccccccccccEEEEEEccccccccEEEEccccccccHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccHHHcccccccccccccccccccccccHHHHHHHHcccccccccccccccccccEEcccccEEEEEEccccccccEEEcccccccHHHHHHHccccccccccccEEEEEccccccHHHHHHHHHHHHccccccEEEEEEcccccccHHcHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc

cccEEEccccccccccccccccccccccccccHHcccccccccccccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHccccccccEEcccccccccccccEEEEEEcccccccEEEEEccHcEEcHHHHcccccHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHccccccccccccccccEccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccccccccccHHHHHHHHHHHHHcEEEccccccccccccccccccccccccccccccccHHHcccccccccHHHcHccccccccccccccHccccccccccEEEEEEEcccccccEEEEEEccccHHHHHHHcccccccccccEEEEEEEcccccHHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc

meascslrsskfisppirpphhplsiastisisvirdpnfgsslrlVRRKNRFSirvsssdtlvaGSREVVSKKEEDLGDLkswmhknglppckvilkekpshnekhrpihyvaasedlqagdaafsvpNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKkqgkksfwlpYIRELDrqrgrgqlavespllwsetelayltgsptKAEILERAEGIKREYNELDTVWFMAgslfqqypydipteaFTFEIFKQAFVAVQSCVVHlqrcgctpqmgteSFASHLVHLQtsctttrtplspthnpkekVSLARRFalvplgppllaYSSKCKAMLAAVDDAVQLVVdrpykagesivvwcgpqpnskllinygfvdednpydRLVVEAAlntedpqyqdKRMVAQRNGKLSVQVFHVHAGrekeaisdmlpylrlgyvsdtsEMQSVIsslgpicpvspcmeRAVLDQLADYFKARlagypatlsedeamltdynlhpkkrVATQLVRMEKKMLNACLQVTADMIMllpdvtvspcpapyaplln

meascslrsskfisppirpphhPLSIASTISISVIRDPNFGSSLRLVRRKNrfsirvsssdtlvagsrevvskkeedlgdlkswmhknglpPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAEllttnklsELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETElayltgsptkaEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQRCGCTPQMGTESFASHLVHLQTSCtttrtplspthnpKEKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGEsivvwcgpqpNSKLLINYGFVDEDNPYDRLVVEAALntedpqyqDKRMVAQRNGKLSVQVFHVHAGrekeaisdmlPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTvspcpapyaplln

MEASCSLRSSKFISPPIRPPHHPLSIASTISISVIRDPNFGSSLRLVRRKNRFSIRVSSSDTLVAGSREVVSKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQRCGCTPQMGTESFASHLVHLQTSCTTTRTPLSPTHNPKEKVSLARRFALVPLGPPLLAYSSKCKamlaavddavqlvvdRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYAPLLN

*************************IASTISISVIRDPNFGSSLRLVRRKNRFSI****************************WMHKNGLPPCKVIL************IHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQRCGCTPQMGTESFASHLVHLQTSCTT***************SLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNT**********VAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCP********

*****SLRSSKFI*******************************************************************LKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQRCGCTPQMGTESFASHLVHLQTSCTTTRTPLSPTHNPKEKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSE*********L*PKKRVATQLVRMEKKMLNACLQVTA***********************

*********SKFISPPIRPPHHPLSIASTISISVIRDPNFGSSLRLVRRKNRFSIRVSSSDTLVAGSREVVSKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQRCGCTPQMGTESFASHLVHLQTSC**************EKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYAPLLN

***SCSLRSSKFISPPIRPPHHPLSIASTISIS*IRD*NFG****LVRRKNRFSIRVSSS************KKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQRCGCTPQMGTESFASHLVHLQTSCTTTRTPLSPTHNPKEKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPY*****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		551	2.2.26 [Sep-21-2011]
B7ZUF3		582	Histone-lysine N-methyltr	yes	no	0.742	0.702	0.217	3e-16
Q86TU7		594	Histone-lysine N-methyltr	yes	no	0.718	0.666	0.218	6e-16
A9X1D0		595	Histone-lysine N-methyltr	N/A	no	0.718	0.665	0.218	1e-15
B0VX69		595	Histone-lysine N-methyltr	yes	no	0.718	0.665	0.222	2e-15
B1MTJ4		595	Histone-lysine N-methyltr	N/A	no	0.718	0.665	0.222	3e-15
C1FXW2		589	Histone-lysine N-methyltr	N/A	no	0.718	0.672	0.222	3e-15
B2KI88		594	Histone-lysine N-methyltr	N/A	no	0.718	0.666	0.222	5e-15
B5FW36		595	Histone-lysine N-methyltr	N/A	no	0.718	0.665	0.222	5e-15
E2RBS6		588	Histone-lysine N-methyltr	yes	no	0.718	0.673	0.222	1e-14
Q91WC0		594	Histone-lysine N-methyltr	yes	no	0.718	0.666	0.216	9e-14

>sp\|B7ZUF3\|SETD3_XENTR Histone-lysine N-methyltransferase setd3 OS=Xenopus tropicalis GN=setd3 PE=2 SV=1	Back alignment and function desciption

 Score = 87.4 bits (215), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 107/493 (21%), Positives = 205/493 (41%), Gaps = 84/493 (17%)

Query: 72  SKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNS 131
            K+E+   +L  W  +NG       L E P           + A+ +++A +    VP  
Sbjct: 73  GKREDYFPELMEWCKENGASTDGFELVEFPEEG------FGLKATREIKAEELFLWVPRK 126

Query: 132 LVVTLERVLGNETIAELLTTNKLSELA---CLALYLMYEKKQGKKSFWLPYIRELDRQRG 188
           L++T+E   G+  +  L + +++ +      LA +L+ E+     SFWLPYI+ L  +  
Sbjct: 127 LLMTVESAKGS-VLGPLYSQDRILQAMGNITLAFHLLCERAD-PNSFWLPYIKTLPNE-- 182

Query: 189 RGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPY- 247
                 ++PL ++E E+ YL  +    ++  + +   R+Y      +F    + Q +P  
Sbjct: 183 -----YDTPLYFNEDEVQYLQSTQAILDVFSQYKNTARQY-----AYFY--KVIQTHPNA 230

Query: 248 -DIP-TEAFTFEIFKQAFVAVQSCVVHLQRCGCTPQMGTESFASHLVHLQTSCTTTRTPL 305
             +P  ++FTF+ ++ A  +V      + R    P          L+ L   C  T   +
Sbjct: 231 NKLPLKDSFTFDDYRWAVSSV------MTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLI 284

Query: 306 SPTHNPKEKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVW 365
           +  +N +                                DD  + V  + +K+GE I ++
Sbjct: 285 TTGYNLE--------------------------------DDRCECVALQDFKSGEQIYIF 312

Query: 366 CGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHA 425
            G + N++ +I+ GF  E+N +DR+ ++  ++  D  Y  K  V  R G  +  VF +H 
Sbjct: 313 YGTRSNAEFVIHNGFFFENNLHDRVKIKLGVSKSDRLYAMKAEVLARAGIPTSSVFALHV 372

Query: 426 GREKEAISDMLPYLRL---------GYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLA 476
             E    + +L +LR+         G++     +  + +      PVS   E  +  +L 
Sbjct: 373 -TEPPISAQLLAFLRVFCMNEDELKGHLIGDHAIDKIFTLGNSEFPVS--WENEI--KLW 427

Query: 477 DYFKAR----LAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIM 532
            + +AR    L  Y  T+ +D  +L   ++     +A +L R+EK++L   L+  +D   
Sbjct: 428 TFLEARASLLLKTYKTTVEDDNKVLEQPDMTFHSAMAIKLRRVEKEILEKALKSASDNRK 487

Query: 533 LLPDVTVSPCPAP 545
           L    +    P P
Sbjct: 488 LYSKNSEEGTPLP 500

Histone methyltransferase that methylates 'Lys-36' of histone H3 (H3K36me). H3 'Lys-36' methylation represents a specific tag for epigenetic transcriptional activation.
Xenopus tropicalis (taxid: 8364)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3

>sp\|Q86TU7\|SETD3_HUMAN Histone-lysine N-methyltransferase setd3 OS=Homo sapiens GN=SETD3 PE=1 SV=1	Back alignment and function description

>sp\|A9X1D0\|SETD3_PAPAN Histone-lysine N-methyltransferase setd3 OS=Papio anubis GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B0VX69\|SETD3_CALJA Histone-lysine N-methyltransferase setd3 OS=Callithrix jacchus GN=SETD3 PE=3 SV=2	Back alignment and function description

>sp\|B1MTJ4\|SETD3_CALMO Histone-lysine N-methyltransferase setd3 OS=Callicebus moloch GN=SETD3 PE=3 SV=2	Back alignment and function description

>sp\|C1FXW2\|SETD3_DASNO Histone-lysine N-methyltransferase setd3 OS=Dasypus novemcinctus GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B2KI88\|SETD3_RHIFE Histone-lysine N-methyltransferase setd3 OS=Rhinolophus ferrumequinum GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B5FW36\|SETD3_OTOGA Histone-lysine N-methyltransferase setd3 OS=Otolemur garnettii GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|E2RBS6\|SETD3_CANFA Histone-lysine N-methyltransferase setd3 OS=Canis familiaris GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|Q91WC0\|SETD3_MOUSE Histone-lysine N-methyltransferase setd3 OS=Mus musculus GN=Setd3 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		551
225452167		509	PREDICTED: histone-lysine N-methyltransf	0.825	0.893	0.790	0.0
449455876		521	PREDICTED: histone-lysine N-methyltransf	0.887	0.938	0.750	0.0
359488614		515	PREDICTED: histone-lysine N-methyltransf	0.825	0.883	0.781	0.0
224117488		502	SET domain protein [Populus trichocarpa]	0.900	0.988	0.727	0.0
296090251		428	unnamed protein product [Vitis vinifera]	0.774	0.997	0.806	0.0
357497055		501	SET domain protein [Medicago truncatula]	0.860	0.946	0.728	0.0
22326803		514	Rubisco methyltransferase family protein	0.916	0.982	0.694	0.0
18377718		514	unknown protein [Arabidopsis thaliana]	0.916	0.982	0.692	0.0
297807453		516	SET domain-containing protein [Arabidops	0.920	0.982	0.687	0.0
356571407		502	PREDICTED: probable ribulose-1,5 bisphos	0.784	0.860	0.766	0.0

>gi\|225452167\|ref\|XP_002264334.1\| PREDICTED: histone-lysine N-methyltransferase setd3 isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  809 bits (2090), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/501 (79%), Positives = 423/501 (84%), Gaps = 46/501 (9%)

Query: 58  SSSDTLVAGSR-------EVVSKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPI 110
           S SDTLVAGSR       E   KKE++ GDLKSWMH+NGLPPCKV+LKE+PSH+E+H+ I
Sbjct: 48  SGSDTLVAGSRKEDGRVSEAARKKEDEFGDLKSWMHENGLPPCKVVLKERPSHHEQHKAI 107

Query: 111 HYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQ 170
           HY+AASEDLQAGD AFSVP+SLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQ
Sbjct: 108 HYIAASEDLQAGDVAFSVPDSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQ 167

Query: 171 GKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNE 230
           GKKSFW PYIRELDRQRGRGQLAVESPLLWSE+ELAYLTGSPTKAE+LERAEGIKREYNE
Sbjct: 168 GKKSFWYPYIRELDRQRGRGQLAVESPLLWSESELAYLTGSPTKAEVLERAEGIKREYNE 227

Query: 231 LDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQRCGCTPQMGTESFASH 290
           LDTVWFMAGSLFQQYPYDIPTEAF FEIFKQAFVA+QSCVVHLQ                
Sbjct: 228 LDTVWFMAGSLFQQYPYDIPTEAFPFEIFKQAFVAIQSCVVHLQ---------------- 271

Query: 291 LVHLQTSCTTTRTPLSPTHNPKEKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQL 350
                                  KVSLARRFALVPLGPPLLAY S CKAMLAAVD +VQL
Sbjct: 272 -----------------------KVSLARRFALVPLGPPLLAYRSNCKAMLAAVDGSVQL 308

Query: 351 VVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVA 410
           VVDRPYKAGESIVVWCGPQPNSKLL+NYGFVDEDN YDR+VVEAALNTEDPQYQDKRMVA
Sbjct: 309 VVDRPYKAGESIVVWCGPQPNSKLLLNYGFVDEDNSYDRIVVEAALNTEDPQYQDKRMVA 368

Query: 411 QRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERA 470
           QRNGKL+VQ FHV  G+E+EA+SDMLPYLRLGYVSD SEMQSVISS GPICPVSPCMERA
Sbjct: 369 QRNGKLTVQKFHVSVGKEREAVSDMLPYLRLGYVSDPSEMQSVISSQGPICPVSPCMERA 428

Query: 471 VLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADM 530
           VLDQL DYF+ RLAGYP T+SEDE +L D NL+PKK VATQLVR+EKKMLNACL+ T D+
Sbjct: 429 VLDQLVDYFERRLAGYPTTMSEDECLLADSNLNPKKLVATQLVRLEKKMLNACLKATVDL 488

Query: 531 IMLLPDVTVSPCPAPYAPLLN 551
           I  LPD TVSPCPAPY PLL 
Sbjct: 489 INQLPDHTVSPCPAPYTPLLK 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449455876\|ref\|XP_004145676.1\| PREDICTED: histone-lysine N-methyltransferase setd3-like [Cucumis sativus] gi\|449492872\|ref\|XP_004159127.1\| PREDICTED: histone-lysine N-methyltransferase setd3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|359488614\|ref\|XP_003633789.1\| PREDICTED: histone-lysine N-methyltransferase setd3 isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224117488\|ref\|XP_002331687.1\| SET domain protein [Populus trichocarpa] gi\|222874165\|gb\|EEF11296.1\| SET domain protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|296090251\|emb\|CBI40070.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357497055\|ref\|XP_003618816.1\| SET domain protein [Medicago truncatula] gi\|355493831\|gb\|AES75034.1\| SET domain protein [Medicago truncatula]	Back alignment and taxonomy information

>gi|22326803|ref|NP_196930.2| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|30684815|ref|NP_851038.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|42573363|ref|NP_974778.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|17473570|gb|AAL38260.1| putative protein [Arabidopsis thaliana] gi|23297671|gb|AAN13005.1| unknown protein [Arabidopsis thaliana] gi|332004624|gb|AED92007.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|332004625|gb|AED92008.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|332004626|gb|AED92009.1| Rubisco methyltransferase family protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|18377718\|gb\|AAL67009.1\| unknown protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297807453\|ref\|XP_002871610.1\| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi\|297317447\|gb\|EFH47869.1\| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356571407\|ref\|XP_003553868.1\| PREDICTED: probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like isoform 1 [Glycine max] gi\|356571409\|ref\|XP_003553869.1\| PREDICTED: probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like isoform 2 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		551
TAIR\|locus:2145663		514	AT5G14260 "AT5G14260" [Arabido	0.537	0.575	0.689	6.1e-194
TAIR\|locus:2077342		504	AT3G07670 [Arabidopsis thalian	0.453	0.496	0.273	6.3e-19
UNIPROTKB\|Q86TU7		594	SETD3 "Histone-lysine N-methyl	0.312	0.289	0.252	1.2e-14
UNIPROTKB\|A9X1D0		595	SETD3 "Histone-lysine N-methyl	0.312	0.289	0.252	2.6e-14
UNIPROTKB\|B0VX69		595	SETD3 "Histone-lysine N-methyl	0.312	0.289	0.252	2.6e-14
UNIPROTKB\|F6R2J7		594	SETD3 "Uncharacterized protein	0.312	0.289	0.252	3.3e-14
UNIPROTKB\|B1MTJ4		595	SETD3 "Histone-lysine N-methyl	0.312	0.289	0.252	3.3e-14
UNIPROTKB\|B7ZUF3		582	setd3 "Histone-lysine N-methyl	0.333	0.316	0.259	5.4e-14
UNIPROTKB\|F1SAQ4		595	SETD3 "Uncharacterized protein	0.315	0.292	0.255	6.6e-14
UNIPROTKB\|C1FXW2		589	SETD3 "Histone-lysine N-methyl	0.312	0.292	0.252	6.7e-14

TAIR\|locus:2145663 AT5G14260 "AT5G14260" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 992 (354.3 bits), Expect = 6.1e-194, Sum P(2) = 6.1e-194
 Identities = 215/312 (68%), Positives = 238/312 (76%)

Query:     1 MEASCSLRSSKFISPPIRPPHHPLSIASTISISVIRDPNFGSSLRLVRRKNRFSIRVSSS 60
             ME   +   +K +S PIR    PLS  S  S+   R+    SS R V  +   S+ VSSS
Sbjct:     1 MEGVITCFHTKCVSLPIRS--FPLSRVS--SLPRWRNNKLISSSRSVHLR---SLCVSSS 53

Query:    61 DTLVA-GS-RE------VVSKKE-EDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIH 111
             DTLVA GS +E      V SKKE +D  DLK WM KNGLPPCKVILKE+P+H++KH+PIH
Sbjct:    54 DTLVASGSPKEDERQSKVSSKKEGDDSEDLKFWMDKNGLPPCKVILKERPAHDQKHKPIH 113

Query:   112 YVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQG 171
             YVAASEDLQ GD AFSVP+SLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQG
Sbjct:   114 YVAASEDLQKGDVAFSVPDSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQG 173

Query:   172 KKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNEL 231
             KKS W PYIRELDRQRGRGQL  ESPLLWSE EL YLTGSPTKAE+LERAEGIKREYNEL
Sbjct:   174 KKSVWYPYIRELDRQRGRGQLDAESPLLWSEAELDYLTGSPTKAEVLERAEGIKREYNEL 233

Query:   232 DTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQRCGCTPQMGTESFASHL 291
             DTVWFMAGSLFQQYP+DIPTEAF+FEIFKQAFVA+QSCVVHLQ  G   +         L
Sbjct:   234 DTVWFMAGSLFQQYPFDIPTEAFSFEIFKQAFVAIQSCVVHLQNVGLARRFALVPLGPPL 293

Query:   292 VHLQTSCTTTRT 303
             +   ++C    T
Sbjct:   294 LAYCSNCKAMLT 305

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR\|locus:2077342 AT3G07670 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q86TU7 SETD3 "Histone-lysine N-methyltransferase setd3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|A9X1D0 SETD3 "Histone-lysine N-methyltransferase setd3" [Papio anubis (taxid:9555)]	Back alignment and assigned GO terms

UNIPROTKB\|B0VX69 SETD3 "Histone-lysine N-methyltransferase setd3" [Callithrix jacchus (taxid:9483)]	Back alignment and assigned GO terms

UNIPROTKB\|F6R2J7 SETD3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|B1MTJ4 SETD3 "Histone-lysine N-methyltransferase setd3" [Callicebus moloch (taxid:9523)]	Back alignment and assigned GO terms

UNIPROTKB\|B7ZUF3 setd3 "Histone-lysine N-methyltransferase setd3" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SAQ4 SETD3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|C1FXW2 SETD3 "Histone-lysine N-methyltransferase setd3" [Dasypus novemcinctus (taxid:9361)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020556001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (509 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		551
pfam09273		128	pfam09273, Rubis-subs-bind, Rubisco LSMT substrate	7e-28

>gnl\|CDD\|220161 pfam09273, Rubis-subs-bind, Rubisco LSMT substrate-binding	Back alignment and domain information

 Score =  107 bits (270), Expect = 7e-28
 Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 7/130 (5%)

Query: 396 LNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVIS 455
           L+  DP Y+DK  + +RNG L    F +          ++L YLRL  +SD         
Sbjct: 1   LSPSDPLYEDKLQLLERNGLLENGNFTLGIDGPPSW--ELLAYLRLLCLSDEELTAWKSV 58

Query: 456 SLGPIC-----PVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVAT 510
            LG +      P+SP  E   L  L    K  L+ YP TL EDEA+L   NL  + R+A 
Sbjct: 59  LLGAVIGHKEAPLSPENEEKALQFLEKLCKLLLSEYPTTLEEDEALLKKGNLSEQLRLAV 118

Query: 511 QLVRMEKKML 520
           +L   EK++L
Sbjct: 119 RLRLGEKRIL 128

Members of this family adopt a multihelical structure, with an irregular array of long and short alpha-helices. They allow binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		551
KOG1337		472	consensus N-methyltransferase [General function pr	100.0
KOG1338		466	consensus Uncharacterized conserved protein [Funct	100.0
PF09273		128	Rubis-subs-bind: Rubisco LSMT substrate-binding; I	99.77
PF00856		162	SET: SET domain; InterPro: IPR001214 The SET domai	99.48
smart00317		116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	97.63
KOG2589		453	consensus Histone tail methylase [Chromatin struct	87.01
KOG1085		392	consensus Predicted methyltransferase (contains a	85.98

>KOG1337 consensus N-methyltransferase [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=3.4e-35  Score=318.94  Aligned_cols=331  Identities=33%  Similarity=0.416  Sum_probs=261.3

Q ss_pred             HHHHHHHHHHHhcCCCCCcHHHHHhcCcCcCCCccCcCCCCCCCHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 008853          158 ACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFM  237 (551)
Q Consensus       158 ~~Lal~Ll~Er~~g~~S~W~pYi~~LP~~~~~~~~~~~~Pl~Ws~~El~~L~gt~l~~~v~~~~~~i~~~y~~l~~~~~~  237 (551)
                      ..++++|+++...+..|.|++|+..||.       .+++|++|..+++..|++++....+..++..++..|.++..++..
T Consensus       112 ~~l~~~l~~~~~~~~~s~w~~~i~~l~~-------~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (472)
T KOG1337|consen  112 IALALFLLLEWAHGEISKWKPYISTLPS-------QYNSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAELLEVLQS  184 (472)
T ss_pred             HHHHHHHHHhhhccccccchhhhhhchh-------hcCCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHHHHHHHHh
Confidence            7899999999998888999999999999       579999999999999999999999988888888877776665433


Q ss_pred             hhhhhhcCCCCCCCCCCCHHHHHHHHHHhhhceeeccccCCCCCCCCcchhhhcccccccccCCCCCCCCCCCCcccccc
Q 008853          238 AGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQRCGCTPQMGTESFASHLVHLQTSCTTTRTPLSPTHNPKEKVSL  317 (551)
Q Consensus       238 ~~~l~~~~p~~~~~~~~t~e~f~wA~~~V~SRa~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  317 (551)
                      ....+...    ..+.++++.|.||+++|+||+|+......                                ...+ +-
T Consensus       185 ~~~~~~~~----~~d~~~~~~~~w~~~~~~sr~~~~~~~~~--------------------------------~~~~-~~  227 (472)
T KOG1337|consen  185 HPSLFGSD----LFDTFTFSAFKWAYSIVNSRAFYLPSLQR--------------------------------LTAG-DP  227 (472)
T ss_pred             cccccccc----ccCccchHHHHHHHHHHhhhhhccccccc--------------------------------cccC-CC
Confidence            22222221    12348999999999999999999862100                                0000 11


Q ss_pred             cccccccccCccccCCCcccceeEeeeCCeEEEEEcccCCCCCeEEeecCCCChHHHHHhcCcccCCCCCCeEEEEEecC
Q 008853          318 ARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALN  397 (551)
Q Consensus       318 ~~~~~LvP~~DmlNh~~~~~~a~~~~~~~~~~l~a~r~i~~GeEvfi~YG~~sN~~LL~~YGFv~~~Np~D~v~l~l~l~  397 (551)
                      ....+|+|++||+||......+.++..++.+.+++.++|++||||||+||+++|++||++||||.++||+|.|.|.+.++
T Consensus       228 ~~~~~L~P~~D~~NH~~~~~~~~~~~~d~~~~l~~~~~v~~geevfi~YG~~~N~eLL~~YGFv~~~N~~d~v~l~~~l~  307 (472)
T KOG1337|consen  228 DDNEALAPLIDLLNHSPEVIKAGYNQEDEAVELVAERDVSAGEEVFINYGPKSNAELLLHYGFVEEDNPYDSVTLKLALP  307 (472)
T ss_pred             CcchhhhhhHHhhccCchhccccccCCCCcEEEEEeeeecCCCeEEEecCCCchHHHHHhcCCCCCCCCcceEEEeeccc
Confidence            24679999999999965555667777777999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHcCCCcccEEEEEeCCccchHhhhhHHHHhhcC---CChHHHHHHHHh-------cCCCCCCChHH
Q 008853          398 TEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYV---SDTSEMQSVISS-------LGPICPVSPCM  467 (551)
Q Consensus       398 ~~d~~~~~k~~lL~~~g~~~~~~f~l~~~~~~~~~~~Ll~~lRl~~~---~~~~El~~~~~~-------~~~~~~~s~~n  467 (551)
                      ..++.+..+.+.+..++......|.+...++..  .+++...++..+   ....++......       .....+++..+
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (472)
T KOG1337|consen  308 PEDVSYLDKSDVLKKNGLPSSGEFSILLTGEPV--SEMLLLFLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDN  385 (472)
T ss_pred             ccccchhHHHHHHhhcCCCCCceEEEeecCCch--hhhhhhhhhhccccccchhhhhhhhcccccccccccccCceeecc
Confidence            999999999999999998877888877665432  333333332222   112132222211       11345678889


Q ss_pred             HHHHHHHHHHH-HHHHHhcCCCCHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008853          468 ERAVLDQLADY-FKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLL  534 (551)
Q Consensus       468 E~~vl~~L~~~-l~~~L~~y~tt~eeDe~~L~~~~~s~r~~~A~~~R~~EK~IL~~~l~~l~~~~~~l  534 (551)
                      |...+..+... +...+..+.+++++++..+.+..++.+..++..++..+|+||.+.+..+..+...+
T Consensus       386 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~vl~~~~l~~~~~~~~k~~~~~~~iL~~~~~~~~~~~~~l  453 (472)
T KOG1337|consen  386 EQKLLYGLQKLLCSLTLRVFKALIDEDESVLKDNILSKLLELLEKLRTLEKRILEKSLKLLRSRLKLL  453 (472)
T ss_pred             hHHHHHHHhhccccchhcccchhhhhhhhhhcccccchhhhhhhhhhhhHHHHHHHHHHHHHHhhhhc
Confidence            99999988888 88888899999999999998887889999999999999999999999998554444

>KOG1338 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices	Back alignment and domain information

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco

Back alignment and domain information

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	Back alignment and domain information

>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		551
3smt_A		497	Crystal Structure Of Human Set Domain-Containing Pr		5e-16
1mlv_A		444	Structure And Catalytic Mechanism Of A Set Domain P		3e-05
2h21_A		440	Structure Of Rubisco Lsmt Bound To Adomet Length =		4e-05

>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3 Length = 497

Back alignment and structure

Iteration: 1

Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 103/472 (21%), Positives = 198/472 (41%), Gaps = 76/472 (16%) Query: 72 SKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNS 131 K+E+ DL W +NG V E + E+ + A+ D++A + VP Sbjct: 72 GKREDYFPDLXKWASENG---ASVEGFEXVNFKEEGFGLR---ATRDIKAEELFLWVPRK 125 Query: 132 LVVTLERVLGNETIAELLTTNKLSELA---CLALYLMYEKKQGKKSFWLPYIRELDRQRG 188 L+ T+E N + L + +++ + LA +L+ E+ SFW PYI+ L + Sbjct: 126 LLXTVESA-KNSVLGPLYSQDRILQAXGNIALAFHLLCERA-SPNSFWQPYIQTLPSE-- 181 Query: 189 RGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPY- 247 ++PL + E E+ YL + ++ + + R+Y +F + Q +P+ Sbjct: 182 -----YDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQY-----AYFY--KVIQTHPHA 229 Query: 248 -DIP-TEAFTFEIFKQAFVAVQSCVVHLQRCGCTPQMGTESFASHLVHLQTSCTTTRTPL 305 +P ++FT+E ++ A +V + R P L+ L C T + Sbjct: 230 NKLPLKDSFTYEDYRWAVSSVXT------RQNQIPTEDGSRVTLALIPLWDXCNHTNGLI 283 Query: 306 SPTHNPKEKVSLARRFALVPLGPPLLAYSSKCKXXXXXXXXXXXXXXXRPYKAGESIVVW 365 + +N ++ R V L + ++AGE I ++ Sbjct: 284 TTGYNLEDD-----RCECVAL---------------------------QDFRAGEQIYIF 311 Query: 366 CGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHA 425 G + N++ +I+ GF ++N +DR+ ++ ++ D Y K V R G + VF +H Sbjct: 312 YGTRSNAEFVIHSGFFFDNNSHDRVKIKLGVSKSDRLYAXKAEVLARAGIPTSSVFALHF 371 Query: 426 GREKEAISDMLPYLRL---------GYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLA 476 E + +L +LR+ ++ S + + + PVS E + L Sbjct: 372 -TEPPISAQLLAFLRVFCXTEEELKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKLWTFLE 430 Query: 477 DYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTA 528 D L Y T+ ED+++L +++L + + A +L EK++L ++ A Sbjct: 431 DRASLLLKTYKTTIEEDKSVLKNHDLSVRAKXAIKLRLGEKEILEKAVKSAA 482

PyMOL of 3smt

>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein Methyltransferase Length = 444

Back alignment and structure

>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet Length = 440

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		551
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	4e-73
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	2e-67
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	8e-55
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Length = 497	Back alignment and structure

 Score =  240 bits (614), Expect = 4e-73
 Identities = 96/477 (20%), Positives = 187/477 (39%), Gaps = 70/477 (14%)

Query: 67  SREVVSKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAF 126
           S     K+E+   DL  W  +NG       +               + A+ D++A +   
Sbjct: 67  SVTFDGKREDYFPDLMKWASENGASVEGFEMVNFKEEG------FGLRATRDIKAEELFL 120

Query: 127 SVPNSLVVTLERVLGNETIAELLTTNKLSEL---ACLALYLMYEKKQGKKSFWLPYIREL 183
            VP  L++T+E    N  +  L + +++ +      LA +L+ E+     SFW PYI+ L
Sbjct: 121 WVPRKLLMTVESAK-NSVLGPLYSQDRILQAMGNIALAFHLLCERA-SPNSFWQPYIQTL 178

Query: 184 DRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQ 243
             +        ++PL + E E+ YL  +    ++  + +   R+Y     V         
Sbjct: 179 PSE-------YDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQYAYFYKVIQT----HP 227

Query: 244 QYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQRCGCTPQMGTESFASHLVHLQTSCTTTRT 303
                   ++FT+E ++ A  +V +    +                              
Sbjct: 228 HANKLPLKDSFTYEDYRWAVSSVMTRQNQI------------------------------ 257

Query: 304 PLSPTHNPKEKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIV 363
              PT +           AL+PL       +          DD  + V  + ++AGE I 
Sbjct: 258 ---PTEDGSRV-----TLALIPLWDMCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIY 309

Query: 364 VWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHV 423
           ++ G + N++ +I+ GF  ++N +DR+ ++  ++  D  Y  K  V  R G  +  VF +
Sbjct: 310 IFYGTRSNAEFVIHSGFFFDNNSHDRVKIKLGVSKSDRLYAMKAEVLARAGIPTSSVFAL 369

Query: 424 HAGREKEAISDMLPYLRLGYVSD---------TSEMQSVISSLGPICPVSPCMERAVLDQ 474
           H        + +L +LR+  +++          S +  + +      PVS   E  +   
Sbjct: 370 HFTEP-PISAQLLAFLRVFCMTEEELKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKLWTF 428

Query: 475 LADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMI 531
           L D     L  Y  T+ ED+++L +++L  + ++A +L   EK++L   ++  A   
Sbjct: 429 LEDRASLLLKTYKTTIEEDKSVLKNHDLSVRAKMAIKLRLGEKEILEKAVKSAAVNR 485

PyMOL of 3smt

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Length = 440	Back alignment and structure

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Length = 449	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		551
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	100.0
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	100.0
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	100.0
3qww_A		433	SET and MYND domain-containing protein 2; methyltr	98.91
3n71_A		490	Histone lysine methyltransferase SMYD1; heart deve	98.89
3qwp_A		429	SET and MYND domain-containing protein 3; SMYD3,SE	98.84
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	97.5
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	96.41
3rq4_A		247	Histone-lysine N-methyltransferase SUV420H2; suppr	96.06
2w5y_A		192	Histone-lysine N-methyltransferase HRX; transcript	95.45
3s8p_A		273	Histone-lysine N-methyltransferase SUV420H1; SET d	95.45
3ope_A		222	Probable histone-lysine N-methyltransferase ASH1L;	94.68
2f69_A		261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	94.64
3h6l_A		278	Histone-lysine N-methyltransferase SETD2; SET doma	94.37
3ooi_A		232	Histone-lysine N-methyltransferase, H3 lysine-36 l	94.16
2qpw_A		149	PR domain zinc finger protein 2; methyltransferase	93.97
1h3i_A		293	Histone H3 lysine 4 specific methyltransferase; 2.	93.13
3bo5_A		290	Histone-lysine N-methyltransferase setmar; SET dom	92.7
3hna_A		287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	92.6
1ml9_A		302	Histone H3 methyltransferase DIM-5; adoMet-depende	92.28
3db5_A		151	PR domain zinc finger protein 4; methyltransferase	91.61
3ep0_A		170	PR domain zinc finger protein 12; PR domain-contai	91.4
2r3a_A		300	Histone-lysine N-methyltransferase SUV39H2; histon	91.16
1mvh_A		299	Cryptic LOCI regulator 4; lysine methyltransferase	91.09
3dal_A		196	PR domain zinc finger protein 1; methyltransferase	90.01
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	86.21
3ihx_A		152	PR domain zinc finger protein 10; PRDM10, methyltr	82.27
3ray_A		237	PR domain-containing protein 11; structural genomi	80.41

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=3.4e-68  Score=577.62  Aligned_cols=399  Identities=24%  Similarity=0.364  Sum_probs=340.3

Q ss_pred             cccccchhHHHHHHHHCCCCCCCcEEeecCCCCCCCCceeEEEEccCCCCCCeEEEcCccCccchhcccCCchHHHhhhh
Q 008853           72 SKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTT  151 (551)
Q Consensus        72 ~~~~~~~~~l~~Wl~~~G~~~~~v~i~~~~~~~~~GrG~~Gv~At~dI~~ge~ll~IP~~~~lt~~~a~~~~~~~~ll~~  151 (551)
                      +.+.+.+.+|++|+++||+.+++|+++.+++   .|+   ||+|+++|++|++|++||.+++||.+++..+ .++.++..
T Consensus        72 ~~r~~~~~~ll~W~~~~G~~~~~v~i~~~~~---~Gr---Gl~A~~dI~~ge~ll~IP~~lllt~~~a~~s-~l~~~~~~  144 (497)
T 3smt_A           72 GKREDYFPDLMKWASENGASVEGFEMVNFKE---EGF---GLRATRDIKAEELFLWVPRKLLMTVESAKNS-VLGPLYSQ  144 (497)
T ss_dssp             SCGGGGHHHHHHHHHHTTCCCTTEEEEEETT---TEE---EEEESSCBCTTCEEEEEEGGGCEEHHHHHTS-TTHHHHHH
T ss_pred             cccHHHHHHHHHHHHHCCCCccceEEEEcCC---Ccc---EEEEcccCCCCCEEEEcCHHHhCcHHhhhhh-hccccccc
Confidence            4557889999999999999999999998863   354   5999999999999999999999999998653 34544433


Q ss_pred             CC---CCchHHHHHHHHHHHhcCCCCCcHHHHHhcCcCcCCCccCcCCCCCCCHHHHhhccCCchHHHHHHHHHHHHHHH
Q 008853          152 NK---LSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREY  228 (551)
Q Consensus       152 ~~---l~~~~~Lal~Ll~Er~~g~~S~W~pYi~~LP~~~~~~~~~~~~Pl~Ws~~El~~L~gt~l~~~v~~~~~~i~~~y  228 (551)
                      ..   ...+..|+++|++|+. |+.|+|+|||++||+       .+++|++|+++|+++|+||++...+.++.+.+.++|
T Consensus       145 ~~~l~~~~~~~Lal~Ll~E~~-~~~S~w~pYl~~LP~-------~~~~pl~w~~eel~~L~gt~l~~~v~~~~~~~~~~~  216 (497)
T 3smt_A          145 DRILQAMGNIALAFHLLCERA-SPNSFWQPYIQTLPS-------EYDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQY  216 (497)
T ss_dssp             CHHHHHCHHHHHHHHHHHHHT-CTTCTTHHHHTTSCS-------CCCSGGGCCHHHHHTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccHHHHHHHHHHHhc-CCCCchHHHHHhCCC-------CCCCCCcCCHHHHhhccCCcHHHHHHHHHHHHHHHH
Confidence            11   1246789999999996 899999999999999       579999999999999999999999988888888899


Q ss_pred             HHHHHHHHHhhhhhhcCCCC--CC-CCCCCHHHHHHHHHHhhhceeeccccCCCCCCCCcchhhhcccccccccCCCCCC
Q 008853          229 NELDTVWFMAGSLFQQYPYD--IP-TEAFTFEIFKQAFVAVQSCVVHLQRCGCTPQMGTESFASHLVHLQTSCTTTRTPL  305 (551)
Q Consensus       229 ~~l~~~~~~~~~l~~~~p~~--~~-~~~~t~e~f~wA~~~V~SRa~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l  305 (551)
                      ..+..       +++.+|..  ++ .+.||+++|+||+++|+||+|.++..                             
T Consensus       217 ~~~~~-------~~~~~p~~~~~~~~~~~t~e~f~wA~~~v~SRa~~~~~~-----------------------------  260 (497)
T 3smt_A          217 AYFYK-------VIQTHPHANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTE-----------------------------  260 (497)
T ss_dssp             HHHHH-------HC----CCCCSTTTTCCCHHHHHHHHHHHHHHCEEEECT-----------------------------
T ss_pred             HHHHH-------HHHhCcccccCccccccCHHHHHHhhheEecccccccCc-----------------------------
Confidence            87653       35555542  22 46799999999999999999987520                             


Q ss_pred             CCCCCCcccccccccccccccCccccCCCcccceeEeeeCCeEEEEEcccCCCCCeEEeecCCCChHHHHHhcCcccCCC
Q 008853          306 SPTHNPKEKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDN  385 (551)
Q Consensus       306 ~~~~~~~~~~~~~~~~~LvP~~DmlNh~~~~~~a~~~~~~~~~~l~a~r~i~~GeEvfi~YG~~sN~~LL~~YGFv~~~N  385 (551)
                             ++.  ....+|||++||+||.+..+++.|+.+++.+.+++.++|++||||||+||+++|++||++|||++++|
T Consensus       261 -------~g~--~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~a~~~i~~Geei~isYG~~~n~~Ll~~YGFv~~~N  331 (497)
T 3smt_A          261 -------DGS--RVTLALIPLWDMCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNN  331 (497)
T ss_dssp             -------TSS--SEEEEECTTGGGCEECSCSEEEEEETTTTEEEEEESSCBCTTCEEEECCCSCCHHHHHHHHSCCCTTC
T ss_pred             -------ccc--cccceeechHHhhcCCCcccceeeeccCCeEEEEeCCccCCCCEEEEeCCCCChHHHHHHCCCCCCCC
Confidence                   011  12469999999999976666778888889999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEecCCCCcchHHHHHHHHHcCCCcccEEEEEeCCccchHhhhhHHHHhhcCCChHHHHHHHHhc--------
Q 008853          386 PYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSL--------  457 (551)
Q Consensus       386 p~D~v~l~l~l~~~d~~~~~k~~lL~~~g~~~~~~f~l~~~~~~~~~~~Ll~~lRl~~~~~~~El~~~~~~~--------  457 (551)
                      |+|.|.|++.++..|+++..|.++|+.+|+....+|.++.++ .+++.+|+++||+++++ ++|+..+....        
T Consensus       332 p~D~v~l~l~~~~~d~l~~~K~~~L~~~gl~~~~~f~l~~~~-~~~~~~Ll~~LRvl~~~-~~el~~~~~~~~~~~~~~~  409 (497)
T 3smt_A          332 SHDRVKIKLGVSKSDRLYAMKAEVLARAGIPTSSVFALHFTE-PPISAQLLAFLRVFCMT-EEELKEHLLGDSAIDRIFT  409 (497)
T ss_dssp             TTCEEEEEEECCTTSTTHHHHHHHHHHTTCCSEEEEEEESSS-SCSCHHHHHHHHHHTCC-HHHHHHHHHTCSSSCTTTT
T ss_pred             CCceEEEEecCCCcchhHHHHHHHHHHcCCCccceeeeecCC-CCCCHHHHHHHHHHhCC-HHHHHHHhcccchhhhhhh
Confidence            999999999999999999999999999999888889987654 35789999999999995 68888776532        


Q ss_pred             --CCCCCCChHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008853          458 --GPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIM  532 (551)
Q Consensus       458 --~~~~~~s~~nE~~vl~~L~~~l~~~L~~y~tt~eeDe~~L~~~~~s~r~~~A~~~R~~EK~IL~~~l~~l~~~~~  532 (551)
                        ...+|+|.+||.++++.|...|..+|+.|+||++||+++|+++.++.|+++|+++|+|||+||+++++.+++...
T Consensus       410 l~~~~~piS~~nE~~v~~~L~~~~~~~L~~Y~TtieeDe~lL~~~~ls~r~r~Av~vR~gEK~IL~~~l~~~~~~~~  486 (497)
T 3smt_A          410 LGNSEFPVSWDNEVKLWTFLEDRASLLLKTYKTTIEEDKSVLKNHDLSVRAKMAIKLRLGEKEILEKAVKSAAVNRE  486 (497)
T ss_dssp             TTCTTSCSCHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCCChhhHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              124678999999999999999999999999999999999998888999999999999999999999999986544

PyMOL of 3smt

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*	Back alignment and structure

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*	Back alignment and structure

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*	Back alignment and structure

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}	Back alignment and structure

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}	Back alignment and structure

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*	Back alignment and structure

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}	Back alignment and structure

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}	Back alignment and structure

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*	Back alignment and structure

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}	Back alignment and structure

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*	Back alignment and structure

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A	Back alignment and structure

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}	Back alignment and structure

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*	Back alignment and structure

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*	Back alignment and structure

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}	Back alignment and structure

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}	Back alignment and structure

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}	Back alignment and structure

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A	Back alignment and structure

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}	Back alignment and structure

>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		551
d2h2ja2		261	b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain	3e-32
d2h2ja1		176	a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, sub	4e-28

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261	Back information, alignment and structure


class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  122 bits (307), Expect = 3e-32
 Identities = 58/310 (18%), Positives = 103/310 (33%), Gaps = 57/310 (18%)

Query: 80  DLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERV 139
               W+ + G+   K  +K              + A +D+   D    VP  L +  + V
Sbjct: 7   TFWKWLQEEGVITAKTPVKASVVTEGLG-----LVALKDISRNDVILQVPKRLWINPDAV 61

Query: 140 LGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLL 199
             +E        ++L     + L+L+ E+   + S W  Y   L ++        +S + 
Sbjct: 62  AASEIGRVC---SELKPWLSVILFLIRERS-REDSVWKHYFGILPQE-------TDSTIY 110

Query: 200 WSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIF 259
           WSE EL  L GS      +   E +K E  +L+    +           +  +  T + F
Sbjct: 111 WSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNK-------RLFPDPVTLDDF 163

Query: 260 KQAFVAVQSCVVHLQRCGCTPQMGTESFASHLVHLQTSCTTTRTPLSPTHNPKEKVSLAR 319
             AF  ++S      R      +      +H   + T                       
Sbjct: 164 FWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDH-------------------- 203

Query: 320 RFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQ-PNSKLLINY 378
                       AY  K  A L + D    L      KAGE + +       N++L ++Y
Sbjct: 204 ------------AYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDY 251

Query: 379 GFVDED-NPY 387
           GF++ + N +
Sbjct: 252 GFIEPNENRH 261

PyMOL of d2h2ja2

>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 176	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		551
d2h2ja2		261	RuBisCo LSMT catalytic domain {Garden pea (Pisum s	100.0
d2h2ja1		176	RuBisCo LSMT C-terminal, substrate-binding domain	99.84
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	97.31
d2f69a2		171	Histone H3 K4-specific methyltransferase SET7/9 ca	95.96
d1ml9a_		284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	93.71
d1mvha_		269	SET domain of Clr4 {Fission yeast (Schizosaccharom	93.11
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	81.01

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=1.6e-40  Score=329.28  Aligned_cols=247  Identities=22%  Similarity=0.334  Sum_probs=198.6

Q ss_pred             cchhHHHHHHHHCCCCCCCcEEeecCCCCCCCCceeEEEEccCCCCCCeEEEcCccCccchhcccCCchHHHhhhhCCCC
Q 008853           76 EDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLS  155 (551)
Q Consensus        76 ~~~~~l~~Wl~~~G~~~~~v~i~~~~~~~~~GrG~~Gv~At~dI~~ge~ll~IP~~~~lt~~~a~~~~~~~~ll~~~~l~  155 (551)
                      .+++.|++|++++|+..+++.+.....  +.||   ||+|+++|++||+|++||..+++|..++..+ .+++.+.  ...
T Consensus         3 ~~~~~~~~W~~~~g~~~~~~~~~~~~~--~~Gr---Gl~AtrdI~~Ge~il~vP~~~~lt~~~~~~~-~~~~~~~--~~~   74 (261)
T d2h2ja2           3 PAVQTFWKWLQEEGVITAKTPVKASVV--TEGL---GLVALKDISRNDVILQVPKRLWINPDAVAAS-EIGRVCS--ELK   74 (261)
T ss_dssp             HHHHHHHHHHHTTTSSCSSCCCEEEEE--TTEE---EEECSSCCCTTCEEEEEEGGGCCSHHHHHTS-GGGTTTT--TSC
T ss_pred             hHHHHHHHHHHHCCCccCCceEeecCC--Ccee---EEEECCcCCCCCEEEEeChHHhccHHHhhhh-HHHHHHh--hcC
Confidence            467889999999999998887766432  3454   5999999999999999999999999887654 2333332  346


Q ss_pred             chHHHHHHHHHHHhcCCCCCcHHHHHhcCcCcCCCccCcCCCCCCCHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHH
Q 008853          156 ELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVW  235 (551)
Q Consensus       156 ~~~~Lal~Ll~Er~~g~~S~W~pYi~~LP~~~~~~~~~~~~Pl~Ws~~El~~L~gt~l~~~v~~~~~~i~~~y~~l~~~~  235 (551)
                      ++..++++|++|+. +..|.|+||+++||+       .+.+|++|+.++++.|+++.+...+....+.+.++|.++... 
T Consensus        75 ~~~~l~~~l~~e~~-~~~s~~~~y~~~lp~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-  145 (261)
T d2h2ja2          75 PWLSVILFLIRERS-REDSVWKHYFGILPQ-------ETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQE-  145 (261)
T ss_dssp             HHHHHHHHHHHHHH-CTTCTTHHHHTTSCS-------CCSCGGGCCHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHh-CCCCchhhhhhcccc-------ccCCcccCCHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            78999999999995 899999999999998       478999999999999999999999998888899999887653 


Q ss_pred             HHhhhhhhcCCCCCCCCCCCHHHHHHHHHHhhhceeeccccCCCCCCCCcchhhhcccccccccCCCCCCCCCCCCcccc
Q 008853          236 FMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQRCGCTPQMGTESFASHLVHLQTSCTTTRTPLSPTHNPKEKV  315 (551)
Q Consensus       236 ~~~~~l~~~~p~~~~~~~~t~e~f~wA~~~V~SRa~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~  315 (551)
                           ++...+.. ....++++.|.||+++|.||+|.++.                                        
T Consensus       146 -----~~~~~~~~-~~~~~~~~~~~~a~~~v~sr~~~~~~----------------------------------------  179 (261)
T d2h2ja2         146 -----IILPNKRL-FPDPVTLDDFFWAFGILRSRAFSRLR----------------------------------------  179 (261)
T ss_dssp             -----TTTTTTTT-CCSCCCHHHHHHHHHHHHHHSBCCC-----------------------------------------
T ss_pred             -----HHhhhhhh-ccCccCHHHHHHHHHHhhcccccccc----------------------------------------
Confidence                 33333332 34678999999999999999997641                                        


Q ss_pred             cccccccccccCccccCCCc-cccee---------EeeeCCeEEEEEcccCCCCCeEEeecCC-CChHHHHHhcCcccCC
Q 008853          316 SLARRFALVPLGPPLLAYSS-KCKAM---------LAAVDDAVQLVVDRPYKAGESIVVWCGP-QPNSKLLINYGFVDED  384 (551)
Q Consensus       316 ~~~~~~~LvP~~DmlNh~~~-~~~a~---------~~~~~~~~~l~a~r~i~~GeEvfi~YG~-~sN~~LL~~YGFv~~~  384 (551)
                        ....+|+|++||+||.+. ++...         ....++.++|+|.|+|++||||||+||+ ++|++||.+||||+++
T Consensus       180 --~~~~~l~P~~d~~NHsc~pn~~~~~~~~~~~~~~~~~~~~~~l~A~r~I~~GEEI~isYG~~~~n~~ll~~yGFv~~~  257 (261)
T d2h2ja2         180 --NENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPN  257 (261)
T ss_dssp             ----CCBCCTTGGGCEECSSCCSCCCCCC-----------CEEEEECSSCCCTTSBCEECSCSSCCHHHHHHHSSCCCSC
T ss_pred             --cccccchhhhHHhhcCCCCCcccccccccCcccccCCCcEEEEEECCCCCCCCEEEEecCCCCCHHHHHHhCCCCCCC
Confidence              124689999999999542 22111         1223568999999999999999999996 7999999999999776


Q ss_pred             -CCC
Q 008853          385 -NPY  387 (551)
Q Consensus       385 -Np~  387 (551)
                       |||
T Consensus       258 ~n~~  261 (261)
T d2h2ja2         258 ENRH  261 (261)
T ss_dssp             GGGC
T ss_pred             CCCC
Confidence             887

PyMOL of d2h2ja2

>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	Back information, alignment and structure

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure