Citrus Sinensis ID: 008855

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-
MNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ
cccccccccccEEEEEEccccccHHHHHHHHHcccccccccccccEEcccEEEccccccEEEccEEEEEEEccccccccccccccHHHHHHHHHHHcccccccEEEEccccHHHHcccccccccccccccccccHHHHHHHHHcccccEEEccccccEEccccccccccccccccccccccccccccHHHcccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHcccccccccccccccccccccHHHHHHccccccccccccccccccccccccEEEEEccEEEEEccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccEEEEEEEEccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHccccccEEEEEcccccEEEEEEEcccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccccc
cccccccEEccccEEEEccccccHHHHHcccccHHHHHcccccccEEcccEEEEccccEEEEccEEEEEEcccccccccccccccHHHHHHHHHHccccccEEEEEEcccccccHcccccccccccccccccccHHHHHHHHHccccEEEEccccEEEEcccccccccccEEEEEEEcccccHHHcEEEEEEcccccccccHHHHHcccccccccccHHHHcccccccHccccccccccccccccccccccccccccccccccEEEccccccccHHHHHcccccccHHHHHHHHHHHHHccccccccccHHHHcccccHHHHHHHHHHcccccccccccEEccccccccEEEEEEccEEEEEccccccccccEEEEEccccccHccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccEEEEEEEEccHHHHHHHHHHHHHHHHHHccHHHHcccccccccHHHHHHHccccccEEEEEcccccEEEEEEcccccccHHHHHHHHHHHccccccccHHcccccHHHHHHHHHHHHHHcccccccc
mnyvegrseipiptyfigdYGVGAAKVLLAASKnsanqgfkmdgfkvtdNLFWlkgsgnftlhGLSVAYLsgrqssegqqfgtysqDDVDALRALaeepgivdlfltnewpsgvtnkaAASDMLVgisdssntdsTVSELVAEIkpryhiagskgvfyarepysnvdaVHVTRFlglapvgnkekqkfihalsptpaatmsaadismktpnttlspytfldqgshskeaakrpsdsvsdsqywrydvsqkrqkhgggdgdkMCFKFiysgscprgekcnfrhdtdaREQCLRGVCLDFiikgkcekgpecsykhslqnddsqrthrsenasanrskecwfclsspsveshLIVSVGEYYycalpkgplvedhvlvipvehvpntistspECEKELGRFQNSLMMYYKNQGKEAVFFEWLskrgthanlqavpiptskaaAVQDIFNLAAEKLGFKFLatksskssdgrrsLRAQFdrncsffyvelpegtvlshlieenerfpaqFGREVLAGLLNIAdkadwrncmlgkeeETKMVEDFKKRFEAFDPNQ
mnyvegrseipipTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAeikpryhiagskgvFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSkeaakrpsdsvsdsqywRYDVsqkrqkhgggdgdKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKcekgpecsykhslqnddsqrtHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHvpntistspecEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFlatksskssdgrrslRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ
MNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ
*********IPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLS************Y**DDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVG***********SELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIH****************************************************W****************DKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEK******************************ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLA**************AQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLG**********************
MNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAA**************DSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGL***********IHALSPTP**********MKTPNTTLSPYTFLDQG*************VSDSQYWRYDVSQ******GGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGP*************************RSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSS**SDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ
MNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISD********SELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQG****************SQYWRYDV**********DGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPEC*************************KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLAT***********LRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ
MNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGIS**SNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQ***************************************MCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIK**********************************KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ
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MNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query551 2.2.26 [Sep-21-2011]
Q84WU9596 Zinc finger CCCH domain-c yes no 0.985 0.911 0.697 0.0
Q69NK8613 Zinc finger CCCH domain-c yes no 0.985 0.885 0.595 0.0
Q8AVL0540 CWF19-like protein 1 OS=X N/A no 0.838 0.855 0.311 5e-57
Q5RGJ5544 CWF19-like protein 1 OS=D yes no 0.843 0.854 0.290 7e-57
O16216533 CWF19-like protein 1 homo yes no 0.833 0.861 0.287 1e-50
Q8CI33537 CWF19-like protein 1 OS=M yes no 0.831 0.852 0.292 6e-45
Q69YN2538 CWF19-like protein 1 OS=H yes no 0.836 0.856 0.289 3e-40
Q5R8R4538 CWF19-like protein 1 OS=P yes no 0.366 0.375 0.390 5e-38
Q10414561 CWF19-like protein mug161 yes no 0.820 0.805 0.261 2e-37
A1Z8J0545 CWF19-like protein 1 homo yes no 0.397 0.401 0.344 1e-32
>sp|Q84WU9|C3H64_ARATH Zinc finger CCCH domain-containing protein 64 OS=Arabidopsis thaliana GN=At5g56900 PE=2 SV=1 Back     alignment and function desciption
 Score =  799 bits (2064), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/552 (69%), Positives = 451/552 (81%), Gaps = 9/552 (1%)

Query: 1   MNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNF 60
           ++YVEGR+++PIPTYF GDYGV A K+L   SK + NQGFKMDG +V  NLFWL+GSG F
Sbjct: 53  LDYVEGRAQVPIPTYFTGDYGVVAPKILSTTSKKAENQGFKMDGLEVCHNLFWLRGSGKF 112

Query: 61  TLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAA 120
           +LHGLSVAYLSGRQSSE Q FG YSQDDVDALRALAEEPG VDLFLTNEWP+GVTN+AA 
Sbjct: 113 SLHGLSVAYLSGRQSSESQ-FGKYSQDDVDALRALAEEPGGVDLFLTNEWPAGVTNRAAV 171

Query: 121 SDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPV 180
           SD+ VGISDSS +DSTVSELV E+KPRYHIAGS GVFYAREPY N ++ HVTRF+GLA V
Sbjct: 172 SDIPVGISDSSCSDSTVSELVMEVKPRYHIAGSMGVFYAREPYLNAESTHVTRFIGLAQV 231

Query: 181 GNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDS 240
           GNK KQKF+HALSPTP +TMS A++S K P TTL PY   D  + SK   KRP+DS SDS
Sbjct: 232 GNKNKQKFLHALSPTPTSTMSPAELSAKPPKTTLWPYNLQDGAAESK---KRPNDSDSDS 288

Query: 241 QYWRYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFII 300
           QYWRYDV  KRQK  G  G+K+CFKF+ SGSCPRGE C+F+H+ +AREQC RGVCLD II
Sbjct: 289 QYWRYDVP-KRQK-SGSQGEKLCFKFVCSGSCPRGEDCHFQHNAEAREQCRRGVCLDLII 346

Query: 301 KGKCEKGPECSYKHSLQNDDS-QRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYY 359
           KGKCEKGPECSYKH  Q++ S QR  RSENA  NRSKECWFCLSSPSVESHLIVSVGE +
Sbjct: 347 KGKCEKGPECSYKHEFQDESSIQRKPRSENA--NRSKECWFCLSSPSVESHLIVSVGESF 404

Query: 360 YCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWL 419
           YCALPKG LVEDH+L+IP+EH+PNT+  SPE E EL R+QN L   YK+QG +AVFFE +
Sbjct: 405 YCALPKGSLVEDHILIIPIEHLPNTLVLSPEVESELSRYQNGLRNCYKSQGNDAVFFELV 464

Query: 420 SKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNC 479
           SKR +HANLQ VP+P+S+A  + +IF+LAAEKLGFK +  K + S+DGR+ L+ +++   
Sbjct: 465 SKRVSHANLQVVPVPSSRARLLPNIFSLAAEKLGFKLVTKKFNDSTDGRKYLQKEYNAAL 524

Query: 480 SFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVED 539
             FYVELP+GTVLSH +EENE FPAQFGREVLAGLL I D+ADWRNC + +EEE K+ ED
Sbjct: 525 GLFYVELPDGTVLSHTLEENEVFPAQFGREVLAGLLKIPDRADWRNCKISQEEEAKLAED 584

Query: 540 FKKRFEAFDPNQ 551
           FKK+F+ FDP Q
Sbjct: 585 FKKQFQEFDPCQ 596

Arabidopsis thaliana (taxid: 3702)
>sp|Q69NK8|C3H59_ORYSJ Zinc finger CCCH domain-containing protein 59 OS=Oryza sativa subsp. japonica GN=Os09g0364000 PE=2 SV=1 Back     alignment and function description
>sp|Q8AVL0|C19L1_XENLA CWF19-like protein 1 OS=Xenopus laevis GN=cwf19l1 PE=2 SV=1 Back     alignment and function description
>sp|Q5RGJ5|C19L1_DANRE CWF19-like protein 1 OS=Danio rerio GN=cwf19l1 PE=2 SV=1 Back     alignment and function description
>sp|O16216|C19L1_CAEEL CWF19-like protein 1 homolog OS=Caenorhabditis elegans GN=F17A9.2 PE=3 SV=2 Back     alignment and function description
>sp|Q8CI33|C19L1_MOUSE CWF19-like protein 1 OS=Mus musculus GN=Cwf19l1 PE=2 SV=2 Back     alignment and function description
>sp|Q69YN2|C19L1_HUMAN CWF19-like protein 1 OS=Homo sapiens GN=CWF19L1 PE=1 SV=2 Back     alignment and function description
>sp|Q5R8R4|C19L1_PONAB CWF19-like protein 1 OS=Pongo abelii GN=CWF19L1 PE=2 SV=1 Back     alignment and function description
>sp|Q10414|MU161_SCHPO CWF19-like protein mug161 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug161 PE=1 SV=1 Back     alignment and function description
>sp|A1Z8J0|C19L1_DROME CWF19-like protein 1 homolog OS=Drosophila melanogaster GN=CG7741 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query551
359484480607 PREDICTED: zinc finger CCCH domain-conta 1.0 0.907 0.731 0.0
255546111606 nucleic acid binding protein, putative [ 0.994 0.904 0.722 0.0
449435870606 PREDICTED: zinc finger CCCH domain-conta 1.0 0.909 0.730 0.0
224112144606 predicted protein [Populus trichocarpa] 0.983 0.894 0.721 0.0
297738661593 unnamed protein product [Vitis vinifera] 0.974 0.905 0.705 0.0
356547875601 PREDICTED: zinc finger CCCH domain-conta 0.990 0.908 0.698 0.0
145362692596 zinc finger CCCH domain-containing prote 0.985 0.911 0.697 0.0
297796575603 hypothetical protein ARALYDRAFT_495780 [ 0.985 0.900 0.688 0.0
8777430593 unnamed protein product [Arabidopsis tha 0.980 0.910 0.688 0.0
356564790552 PREDICTED: zinc finger CCCH domain-conta 0.823 0.822 0.722 0.0
>gi|359484480|ref|XP_002279554.2| PREDICTED: zinc finger CCCH domain-containing protein 64-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  876 bits (2263), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/554 (73%), Positives = 475/554 (85%), Gaps = 3/554 (0%)

Query: 1   MNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNF 60
           M+Y+EGRS+IP+PTYFIGDYG+GAAKVL AASK+SAN GFKMDG ++ DNL+WLKGSG F
Sbjct: 54  MDYIEGRSQIPLPTYFIGDYGIGAAKVLSAASKDSANLGFKMDGLRICDNLYWLKGSGKF 113

Query: 61  TLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAA 120
           TLHGLSV Y+SGR+S +GQQFG YSQDDVDALRALA+E GIVDLFLTNEWPSGVT  A  
Sbjct: 114 TLHGLSVVYISGRRSLDGQQFGKYSQDDVDALRALADESGIVDLFLTNEWPSGVTKGAVT 173

Query: 121 SDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPV 180
           S++  GISDSS  DS +SELV EIKPRYHIAG+KG+FY REPYSN+DAVHVTRFLGLAPV
Sbjct: 174 SNIPPGISDSSGCDSAISELVGEIKPRYHIAGTKGIFYDREPYSNLDAVHVTRFLGLAPV 233

Query: 181 GNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDS 240
           GNK+KQKFIHA+SP PA+TMS+A+ISMK PNTTL PY  +++ + + +A KRPSDS+SD+
Sbjct: 234 GNKDKQKFIHAISPIPASTMSSAEISMKPPNTTLFPYKIIEETAPTNQATKRPSDSISDT 293

Query: 241 QYWRYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFII 300
           QYWRYDVSQKRQKHG GDGDK+CFKF+ SGSCPRG KCNF HDT+AREQ +RGVC DFI 
Sbjct: 294 QYWRYDVSQKRQKHGAGDGDKLCFKFVSSGSCPRGNKCNFLHDTEAREQYMRGVCFDFIN 353

Query: 301 KGKCEKGPECSYKHSLQNDD---SQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGE 357
           KGKCE+GP+C++KHSLQ++D   + R   SENA ++RSK CWFCLSSP VESHLI+S+GE
Sbjct: 354 KGKCERGPDCNFKHSLQDEDEGFASRRSGSENAKSSRSKRCWFCLSSPDVESHLIISIGE 413

Query: 358 YYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFE 417
            YYCAL KGPLVED VLVIPVEH  NT+S  PECE EL RFQ SL MY++ QGKE VFFE
Sbjct: 414 SYYCALAKGPLVEDQVLVIPVEHSANTLSLPPECEIELDRFQKSLKMYFRTQGKEVVFFE 473

Query: 418 WLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDR 477
           W+ KRGTHAN+QAVPIP S+A+AV++IF LAAEKLGF+F+ TKS+  S+GR+SLRAQFD 
Sbjct: 474 WIFKRGTHANIQAVPIPLSRASAVKNIFILAAEKLGFQFVTTKSNNDSEGRKSLRAQFDD 533

Query: 478 NCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMV 537
             SFFYVELP+GT+LSH IE+NE+FP QFGREVLAGLLN+AD+ADWRNC   KE+E KM 
Sbjct: 534 KISFFYVELPDGTILSHAIEDNEKFPVQFGREVLAGLLNMADRADWRNCKQSKEDEMKMA 593

Query: 538 EDFKKRFEAFDPNQ 551
           E FK +F+ FDP Q
Sbjct: 594 EVFKNQFKKFDPYQ 607

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255546111|ref|XP_002514115.1| nucleic acid binding protein, putative [Ricinus communis] gi|223546571|gb|EEF48069.1| nucleic acid binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449435870|ref|XP_004135717.1| PREDICTED: zinc finger CCCH domain-containing protein 64-like [Cucumis sativus] gi|449489882|ref|XP_004158448.1| PREDICTED: zinc finger CCCH domain-containing protein 64-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224112144|ref|XP_002332828.1| predicted protein [Populus trichocarpa] gi|222833259|gb|EEE71736.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297738661|emb|CBI27906.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356547875|ref|XP_003542330.1| PREDICTED: zinc finger CCCH domain-containing protein 64-like [Glycine max] Back     alignment and taxonomy information
>gi|145362692|ref|NP_974945.2| zinc finger CCCH domain-containing protein 64 [Arabidopsis thaliana] gi|75243460|sp|Q84WU9.1|C3H64_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 64; Short=AtC3H64 gi|27754231|gb|AAO22569.1| unknown protein [Arabidopsis thaliana] gi|332009438|gb|AED96821.1| zinc finger CCCH domain-containing protein 64 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297796575|ref|XP_002866172.1| hypothetical protein ARALYDRAFT_495780 [Arabidopsis lyrata subsp. lyrata] gi|297312007|gb|EFH42431.1| hypothetical protein ARALYDRAFT_495780 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|8777430|dbj|BAA97020.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356564790|ref|XP_003550631.1| PREDICTED: zinc finger CCCH domain-containing protein 64-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query551
TAIR|locus:2164630596 AT5G56900 [Arabidopsis thalian 0.985 0.911 0.697 1.7e-210
UNIPROTKB|F1S8V2540 CWF19L1 "Uncharacterized prote 0.366 0.374 0.413 3.7e-68
MGI|MGI:1919752537 Cwf19l1 "CWF19-like 1, cell cy 0.366 0.376 0.413 3.7e-68
UNIPROTKB|E1BG07539 CWF19L1 "Uncharacterized prote 0.366 0.374 0.409 9.8e-68
RGD|1304716537 Cwf19l1 "CWF19-like 1, cell cy 0.366 0.376 0.404 6.8e-67
UNIPROTKB|E2RJE9537 CWF19L1 "Uncharacterized prote 0.411 0.422 0.390 8.7e-67
UNIPROTKB|Q69YN2538 CWF19L1 "CWF19-like protein 1" 0.366 0.375 0.395 5.4e-65
ZFIN|ZDB-GENE-031204-5544 cwf19l1 "CWF19-like 1, cell cy 0.455 0.461 0.333 7.3e-62
UNIPROTKB|E1C959548 E1C959 "Uncharacterized protei 0.366 0.368 0.350 2.1e-55
FB|FBgn0033615545 CG7741 [Drosophila melanogaste 0.397 0.401 0.344 4e-53
TAIR|locus:2164630 AT5G56900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2035 (721.4 bits), Expect = 1.7e-210, P = 1.7e-210
 Identities = 385/552 (69%), Positives = 451/552 (81%)

Query:     1 MNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNF 60
             ++YVEGR+++PIPTYF GDYGV A K+L   SK + NQGFKMDG +V  NLFWL+GSG F
Sbjct:    53 LDYVEGRAQVPIPTYFTGDYGVVAPKILSTTSKKAENQGFKMDGLEVCHNLFWLRGSGKF 112

Query:    61 TLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAA 120
             +LHGLSVAYLSGRQSSE Q FG YSQDDVDALRALAEEPG VDLFLTNEWP+GVTN+AA 
Sbjct:   113 SLHGLSVAYLSGRQSSESQ-FGKYSQDDVDALRALAEEPGGVDLFLTNEWPAGVTNRAAV 171

Query:   121 SDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPV 180
             SD+ VGISDSS +DSTVSELV E+KPRYHIAGS GVFYAREPY N ++ HVTRF+GLA V
Sbjct:   172 SDIPVGISDSSCSDSTVSELVMEVKPRYHIAGSMGVFYAREPYLNAESTHVTRFIGLAQV 231

Query:   181 GNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDS 240
             GNK KQKF+HALSPTP +TMS A++S K P TTL PY   D  + SK   KRP+DS SDS
Sbjct:   232 GNKNKQKFLHALSPTPTSTMSPAELSAKPPKTTLWPYNLQDGAAESK---KRPNDSDSDS 288

Query:   241 QYWRYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFII 300
             QYWRYDV  KRQK  G  G+K+CFKF+ SGSCPRGE C+F+H+ +AREQC RGVCLD II
Sbjct:   289 QYWRYDVP-KRQK-SGSQGEKLCFKFVCSGSCPRGEDCHFQHNAEAREQCRRGVCLDLII 346

Query:   301 KGKCEKGPECSYKHSLQNDDS-QRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYY 359
             KGKCEKGPECSYKH  Q++ S QR  RSENA  NRSKECWFCLSSPSVESHLIVSVGE +
Sbjct:   347 KGKCEKGPECSYKHEFQDESSIQRKPRSENA--NRSKECWFCLSSPSVESHLIVSVGESF 404

Query:   360 YCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWL 419
             YCALPKG LVEDH+L+IP+EH+PNT+  SPE E EL R+QN L   YK+QG +AVFFE +
Sbjct:   405 YCALPKGSLVEDHILIIPIEHLPNTLVLSPEVESELSRYQNGLRNCYKSQGNDAVFFELV 464

Query:   420 SKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNC 479
             SKR +HANLQ VP+P+S+A  + +IF+LAAEKLGFK +  K + S+DGR+ L+ +++   
Sbjct:   465 SKRVSHANLQVVPVPSSRARLLPNIFSLAAEKLGFKLVTKKFNDSTDGRKYLQKEYNAAL 524

Query:   480 SFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVED 539
               FYVELP+GTVLSH +EENE FPAQFGREVLAGLL I D+ADWRNC + +EEE K+ ED
Sbjct:   525 GLFYVELPDGTVLSHTLEENEVFPAQFGREVLAGLLKIPDRADWRNCKISQEEEAKLAED 584

Query:   540 FKKRFEAFDPNQ 551
             FKK+F+ FDP Q
Sbjct:   585 FKKQFQEFDPCQ 596
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0003824 "catalytic activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
UNIPROTKB|F1S8V2 CWF19L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1919752 Cwf19l1 "CWF19-like 1, cell cycle control (S. pombe)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BG07 CWF19L1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1304716 Cwf19l1 "CWF19-like 1, cell cycle control (S. pombe)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RJE9 CWF19L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q69YN2 CWF19L1 "CWF19-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031204-5 cwf19l1 "CWF19-like 1, cell cycle control" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C959 E1C959 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0033615 CG7741 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q69NK8C3H59_ORYSJNo assigned EC number0.59520.98540.8858yesno
Q84WU9C3H64_ARATHNo assigned EC number0.69740.98540.9110yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.02850004
hypothetical protein (606 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query551
pfam04677122 pfam04677, CwfJ_C_1, Protein similar to CwfJ C-ter 2e-42
pfam0467697 pfam04676, CwfJ_C_2, Protein similar to CwfJ C-ter 6e-27
cd07380150 cd07380, MPP_CWF19_N, Schizosaccharomyces pombe CW 6e-24
COG5084285 COG5084, YTH1, Cleavage and polyadenylation specif 0.004
>gnl|CDD|218208 pfam04677, CwfJ_C_1, Protein similar to CwfJ C-terminus 1 Back     alignment and domain information 
 Score =  147 bits (373), Expect = 2e-42
 Identities = 53/115 (46%), Positives = 75/115 (65%)

Query: 331 SANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPE 390
                  CWFCLS+P++E HLIVS+G   Y ALPKGPLV  H L+IP++H+P+T+S   E
Sbjct: 7   IKILPDSCWFCLSNPNLEKHLIVSIGNKAYLALPKGPLVSGHCLIIPIQHIPSTLSLDEE 66

Query: 391 CEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIF 445
              E+  F+ +L + YK+QGK+AVFFE  S+R  H ++Q +P+P S +      F
Sbjct: 67  VWDEIRNFRKALTLMYKSQGKDAVFFEIASQRRPHLHIQCIPVPKSISKLAPLYF 121

This region is found in the N terminus of Schizosaccharomyces pombe protein CwfJ. CwfJ is part of the Cdc5p complex involved in mRNA splicing. Length = 122
>gnl|CDD|218207 pfam04676, CwfJ_C_2, Protein similar to CwfJ C-terminus 2 Back     alignment and domain information
>gnl|CDD|163623 cd07380, MPP_CWF19_N, Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain Back     alignment and domain information
>gnl|CDD|227416 COG5084, YTH1, Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 551
KOG2476528 consensus Uncharacterized conserved protein [Funct 100.0
KOG2477628 consensus Uncharacterized conserved protein [Funct 100.0
KOG2863456 consensus RNA lariat debranching enzyme [RNA proce 100.0
cd00844262 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-t 100.0
PF04677121 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; In 100.0
cd07380150 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and re 99.95
PF0467698 CwfJ_C_2: Protein similar to CwfJ C-terminus 2; In 99.95
PRK10687119 purine nucleoside phosphoramidase; Provisional 99.74
COG0537138 Hit Diadenosine tetraphosphate (Ap4A) hydrolase an 99.69
cd01275126 FHIT FHIT (fragile histidine family): FHIT protein 99.63
cd01277103 HINT_subgroup HINT (histidine triad nucleotide-bin 99.63
cd01276104 PKCI_related Protein Kinase C Interacting protein 99.58
PF0123098 HIT: HIT domain; InterPro: IPR001310 The Histidine 99.52
cd01278104 aprataxin_related aprataxin related: Aprataxin, a 99.46
KOG3275127 consensus Zinc-binding protein of the histidine tr 99.46
cd0046886 HIT_like HIT family: HIT (Histidine triad) protein 99.41
TIGR00209347 galT_1 galactose-1-phosphate uridylyltransferase, 99.18
PRK11720346 galactose-1-phosphate uridylyltransferase; Provisi 99.17
KOG3379150 consensus Diadenosine polyphosphate hydrolase and 99.01
cd00608329 GalT Galactose-1-phosphate uridyl transferase (Gal 99.0
PLN02643336 ADP-glucose phosphorylase 99.0
PF11969116 DcpS_C: Scavenger mRNA decapping enzyme C-term bin 98.92
cd07392188 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and rel 98.72
KOG4359166 consensus Protein kinase C inhibitor-like protein 98.2
cd07388224 MPP_Tt1561 Thermus thermophilus Tt1561 and related 98.13
COG1085338 GalT Galactose-1-phosphate uridylyltransferase [En 96.83
PHA03008234 hypothetical protein; Provisional 96.46
PF02744166 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transf 96.36
PF14582255 Metallophos_3: Metallophosphoesterase, calcineurin 95.95
COG2129226 Predicted phosphoesterases, related to the Icc pro 95.81
cd07393232 MPP_DR1119 Deinococcus radiodurans DR1119 and rela 95.2
cd07379135 MPP_239FB Homo sapiens 239FB and related proteins, 94.43
cd07402240 MPP_GpdQ Enterobacter aerogenes GpdQ and related p 93.91
cd07397238 MPP_DevT Myxococcus xanthus DevT and related prote 93.63
TIGR03729239 acc_ester putative phosphoesterase. Members of thi 93.18
PF05011145 DBR1: Lariat debranching enzyme, C-terminal domain 92.8
COG4360298 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetr 92.76
KOG3947305 consensus Phosphoesterases [General function predi 92.15
KOG1595528 consensus CCCH-type Zn-finger protein [General fun 91.86
cd00608329 GalT Galactose-1-phosphate uridyl transferase (Gal 91.43
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 90.29
PLN03103403 GDP-L-galactose-hexose-1-phosphate guanyltransfera 90.03
KOG2958354 consensus Galactose-1-phosphate uridylyltransferas 89.43
COG1085338 GalT Galactose-1-phosphate uridylyltransferase [En 86.64
PLN02643336 ADP-glucose phosphorylase 86.36
smart0035627 ZnF_C3H1 zinc finger. 86.12
cd07403129 MPP_TTHA0053 Thermus thermophilus TTHA0053 and rel 84.53
KOG0562184 consensus Predicted hydrolase (HIT family) [Genera 83.03
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 80.48
>KOG2476 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=6.8e-115  Score=893.47  Aligned_cols=465  Identities=44%  Similarity=0.751  Sum_probs=399.8

Q ss_pred             CCccCCcccCCceEEEecCCCCChHHHHHHhhcccccCCCccCCceeccCeEEecCCceeEE-CCeEEEEEccccCCCCC
Q 008855            1 MNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTL-HGLSVAYLSGRQSSEGQ   79 (551)
Q Consensus         1 ~~y~~G~~~~PipTyfigg~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~Nl~yLg~~gv~~~-~GLrIa~lsG~~~~~~~   79 (551)
                      ++|++|.+++||||||+|+|...+.++++.           ++|.|||+||||||++|++++ +||+||||||.++....
T Consensus        55 ~~ykng~~~vPiptY~~g~~~~~~~ky~~n-----------~~g~Ei~~Nlt~Lg~~G~~~l~sGl~IaYLsG~e~~~~~  123 (528)
T KOG2476|consen   55 EKYKNGTKKVPIPTYFLGDNANETEKYFEN-----------SDGKEIAENLTYLGRKGTYKLASGLTIAYLSGPESSEKG  123 (528)
T ss_pred             HHHhcCCccCceeEEEecCCCCccceeccc-----------CCCcccccceeeecccceEeecCCcEEEEeecccccccc
Confidence            369999999999999999999877777773           469999999999999999985 69999999999875444


Q ss_pred             cCCCCCHHHHHHHHH---hhcCCCCccEEEeCCCchhccccccccccccCCCCCCCCCHHHHHHHHhcCCCcEEeccCCc
Q 008855           80 QFGTYSQDDVDALRA---LAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGV  156 (551)
Q Consensus        80 ~~~~~~~~dv~~l~~---~~~~~~~vDIllT~~WP~~I~~~~~~~~~~~~~~~~~~Gs~~i~~L~~~lkPrYhFa~~~~~  156 (551)
                       ...|+.+||++|+.   .+....+||||||++||.+|++. +... +  +.....||.++++|+..||||||||++.++
T Consensus       124 -~~~fs~~dv~~l~~~~~~~~~~~gvDILlTseWP~~v~e~-~ss~-~--~~~~~~gs~lvs~La~~lkPRYHFa~~~~v  198 (528)
T KOG2476|consen  124 -ESKFSQADVDELRHRLDTQKEFKGVDILLTSEWPADVQER-NSSL-P--ESKRLCGSELVSELAAELKPRYHFAGSDGV  198 (528)
T ss_pred             -ccccCHHHHHHHhcccccccccCCccEEEecCCcchhhhc-cccC-c--cccCCcchHHHHHHHHhcCcceEeccCCCc
Confidence             34799999999994   33567899999999999999985 2221 2  233568999999999999999999999999


Q ss_pred             eeeccccccC-----CCCceeEEEeccCCCCcccceEEEEecCCCCCCCchhhhcCCCCCCCCCCCccccCCCCcccccC
Q 008855          157 FYAREPYSNV-----DAVHVTRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAK  231 (551)
Q Consensus       157 fyEr~Py~~~-----~~~~~TRFi~L~~~g~~~K~kwlyAf~i~p~~~~~~~~l~~~p~~~T~~Pf~~~~~~~~~~~~~k  231 (551)
                      ||||+||+|+     ...++||||+||++||++|+||+|||++.|+.+|.+.+|.++|+|+|+|||....  .. ..+.|
T Consensus       199 ~YErePyrn~~~~~~~~~h~TRFI~LA~vGN~ek~K~lYAfs~~P~~~~~~~el~a~Ppn~~~~Py~~~d--~~-~qs~k  275 (528)
T KOG2476|consen  199 FYEREPYRNHAALNEEAGHVTRFIALAKVGNPEKQKWLYAFSLKPMGTMELAELTAKPPNLIPNPYNLED--VA-IQSNK  275 (528)
T ss_pred             eeecccccchhhhcccccceeeeeehhhcCCccccceeeeecccccccchhhhcccCCCccCCCCcchhh--hh-hhhcc
Confidence            9999999997     3789999999999999999999999999999999999999999999999996221  11 12455


Q ss_pred             CCCCCCCCCcccccccccccccCCCCCCCCcceeeeccCCCCCCCcccccCCchhhhhhhcccchhhhhcCCcCCCCCcc
Q 008855          232 RPSDSVSDSQYWRYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECS  311 (551)
Q Consensus       232 ~~~~~~~~~~~~r~~~~~~~~k~~~~~~~~~c~~~~~~g~~~~g~~c~~~~~~~~~~~~~~~~c~~f~~~g~~~~Gr~~~  311 (551)
                      |..++  ++.+|+||+++++.+                                                  +.+||++.
T Consensus       276 r~~~s--~~~q~ffd~~~~~~~--------------------------------------------------~~~gr~~h  303 (528)
T KOG2476|consen  276 RPNSS--ESTQYFFDMDKQQLS--------------------------------------------------KMNGRESH  303 (528)
T ss_pred             CCCCC--ccceeeeccCccccc--------------------------------------------------cCCccccc
Confidence            65433  245556998632222                                                  12233332


Q ss_pred             ccCCCCCCccccccCCcccccCCCCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHH
Q 008855          312 YKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPEC  391 (551)
Q Consensus       312 ~~h~~~~~~~~~~~~~~~~~~~~~~~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~  391 (551)
                      -+|..     +++|.    +.+.++.||||++||++++||||++|+++|++||||||+.||+|||||+|++++..+++|+
T Consensus       304 ~~~~~-----kgpR~----p~~~pg~CwFCLSnP~vEkHLIVsIG~~~YlAlaKGpLs~~HvlIipi~H~p~~~~ls~ev  374 (528)
T KOG2476|consen  304 SDKSE-----KGPRK----PKIPPGSCWFCLSNPNVEKHLIVSIGNHFYLALAKGPLSSDHVLIIPIEHIPSLVPLSAEV  374 (528)
T ss_pred             ccccc-----cCCCC----CCCCCCceEEEecCCChhhheEEEecceeEEeecCCCCCCCeEEEEEcccccccccCCHHH
Confidence            22211     11111    2356889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCceEEEEecCCCCCeeEEEEEecCcchHHHHHHHHHHHHHHcCCceeeccCCCCcchhhhH
Q 008855          392 EKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSL  471 (551)
Q Consensus       392 ~~Ei~~~~~~L~~~~~~~g~~~v~~E~~~~~~~H~HihvVPvp~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~l  471 (551)
                      ++||.+|+.+|+.||+++|..+|+||+.+.++.|+|+|+||||+.....++..|..++++++++|++.+...      .+
T Consensus       375 ~~Ei~kykaal~~myk~~g~~~vvfE~~~~rs~Hlq~Qvipvpks~s~~ik~~F~~~A~eag~ef~t~~~~~------s~  448 (528)
T KOG2476|consen  375 TQEINKYKAALRKMYKKQGKDAVVFERQSYRSVHLQLQVIPVPKSSSRQIKSSFETAAEEAGLEFETYDSHS------SI  448 (528)
T ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEEeecccceeeEEEEEeccchhhhhhhHHHHHHHHHcCceEEecCcch------hh
Confidence            999999999999999999999999996688999999999999999999999999999999999999876543      25


Q ss_pred             hhhccCCCCeEEEEeCCCceEEEEecCCCccCCccHHHHHHHhcCCCccccccccCCChHHHHHHHHHHHhcCccCCCCC
Q 008855          472 RAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ  551 (551)
Q Consensus       472 ~~~i~~~~~Yf~v~~~~~~~~~~~i~~~~rf~~qFgReVla~lL~lp~r~~Wr~c~~~~eeE~~~~~~Fk~~f~~fD~~~  551 (551)
                      ....+.+.+||+||+|+|+.|+|++..+++||+||||||||+|||||+|+|||+|.+++|||++++++||++|++||||+
T Consensus       449 ~~~~n~~l~yF~vELPdg~~L~hr~~k~e~FplqFGReVlAslLn~pdrvdWr~C~~tkeeE~~~ae~Fkk~F~pyDft~  528 (528)
T KOG2476|consen  449 KNQSNNGLPYFVVELPDGSILIHRLMKNETFPLQFGREVLASLLNLPDRVDWRTCLQTKEEEVALAEKFKKAFKPYDFTL  528 (528)
T ss_pred             hhhhccCCceEEEECCCCCeehhhhhccCccchhhhHHHHHHHcCCcccccHHHhhhhhHHHHHHHHHHHHhccCCCCCC
Confidence            66677788999999999999999999999999999999999999999999999999999999999999999999999995

>KOG2477 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification] Back     alignment and domain information
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain Back     alignment and domain information
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues Back     alignment and domain information
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain Back     alignment and domain information
>PF04676 CwfJ_C_2: Protein similar to CwfJ C-terminus 2; InterPro: IPR006767 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues Back     alignment and domain information
>PRK10687 purine nucleoside phosphoramidase; Provisional Back     alignment and domain information
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only] Back     alignment and domain information
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases Back     alignment and domain information
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides Back     alignment and domain information
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides Back     alignment and domain information
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms [] Back     alignment and domain information
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome Back     alignment and domain information
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms] Back     alignment and domain information
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides Back     alignment and domain information
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1 Back     alignment and domain information
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional Back     alignment and domain information
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only] Back     alignment and domain information
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate Back     alignment and domain information
>PLN02643 ADP-glucose phosphorylase Back     alignment and domain information
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B Back     alignment and domain information
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain Back     alignment and domain information
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only] Back     alignment and domain information
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain Back     alignment and domain information
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion] Back     alignment and domain information
>PHA03008 hypothetical protein; Provisional Back     alignment and domain information
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism Back     alignment and domain information
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A Back     alignment and domain information
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only] Back     alignment and domain information
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain Back     alignment and domain information
>TIGR03729 acc_ester putative phosphoesterase Back     alignment and domain information
>PF05011 DBR1: Lariat debranching enzyme, C-terminal domain; InterPro: IPR007708 This presumed domain is found at the C terminus of lariat debranching enzyme Back     alignment and domain information
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG3947 consensus Phosphoesterases [General function prediction only] Back     alignment and domain information
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional Back     alignment and domain information
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion] Back     alignment and domain information
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion] Back     alignment and domain information
>PLN02643 ADP-glucose phosphorylase Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain Back     alignment and domain information
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only] Back     alignment and domain information
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query551
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 1e-12
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 1e-09
2rhk_C72 Cleavage and polyadenylation specificity factor su 1e-09
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 9e-09
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 4e-04
3ano_A218 AP-4-A phosphorylase; diadenosine polyphosphate, H 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1fit_A147 FragIle histidine protein; FHIT, fragIle histidine 1e-05
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
 Score = 62.3 bits (151), Expect = 1e-12
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 261 KMCFKFIYSGSCPRGEKCNFRHDTDA------REQCLRGVCLDFIIKGKCEKGPECSYKH 314
           ++C  +  SG C  G KC F H            +    +C  F ++G+C  G  C + H
Sbjct: 13  ELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIH 72

Query: 315 SLQND 319
           +   D
Sbjct: 73  NPTED 77
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis} Length = 218 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A* Length = 147 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query551
3n1s_A119 HIT-like protein HINT; histidine triad nucleotide 99.7
3lb5_A161 HIT-like protein involved in cell-cycle regulatio; 99.69
3o0m_A149 HIT family protein; ssgcid, NIH, niaid, SBRI, UW, 99.68
3imi_A147 HIT family protein; structural genomics, infectiou 99.68
3p0t_A138 Uncharacterized protein; ssgcid, HIT-like protein, 99.68
1y23_A145 HIT, histidine triad protein; HIT protein, PKCI-1, 99.67
4egu_A119 Histidine triad (HIT) protein; structural genomics 99.67
3oj7_A117 Putative histidine triad family protein; hydrolase 99.66
3r6f_A135 HIT family protein; structural genomics, seattle s 99.65
3l7x_A173 SMU.412C, putative HIT-like protein involved in ce 99.65
3o1c_A126 Histidine triad nucleotide-binding protein 1; hydr 99.64
2oik_A154 Histidine triad (HIT) protein; HIT-like fold, stru 99.63
2eo4_A149 150AA long hypothetical histidine triad nucleotid 99.63
3ano_A218 AP-4-A phosphorylase; diadenosine polyphosphate, H 99.63
3ksv_A149 Uncharacterized protein; HIT family, structural ge 99.63
1xqu_A147 HIT family hydrolase; protein STRU initiative, PSI 99.6
1fit_A147 FragIle histidine protein; FHIT, fragIle histidine 99.48
1ems_A440 Nitfhit, NIT-fragIle histidine triad fusion protei 99.39
3ohe_A137 Histidine triad (HIT) protein; structural genomics 99.37
3i24_A149 HIT family hydrolase; structural genomics, PSI-2, 99.36
1z84_A351 Galactose-1-phosphate uridyl transferase-like prot 99.21
1gup_A348 Galactose-1-phosphate uridylyltransferase; nucleot 99.17
3nrd_A135 Histidine triad (HIT) protein; structural genomics 99.15
3i4s_A149 Histidine triad protein; hydrolase, phosphatase, H 99.02
3sp4_A204 Aprataxin-like protein; HIT domain, zinc finger, D 98.63
3rl5_A296 Metallophosphoesterase mpped2; alpha-beta fold, me 98.25
1z84_A351 Galactose-1-phosphate uridyl transferase-like prot 97.7
2yvt_A260 Hypothetical protein AQ_1956; structural genomics, 97.5
1uf3_A228 Hypothetical protein TT1561; metallo-dependent pho 97.47
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 96.8
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 95.92
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 95.88
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 94.95
3bl9_A301 Scavenger mRNA-decapping enzyme DCPS; ligand compl 94.93
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 94.88
3d03_A274 Phosphohydrolase; glycerophosphodiesterase, metall 94.71
1vlr_A350 MRNA decapping enzyme; 16740816, structural genomi 94.41
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 94.11
3ib7_A330 ICC protein; metallophosphoesterase, alpha-beta fo 94.05
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 93.99
2rhk_C72 Cleavage and polyadenylation specificity factor su 93.62
1gup_A348 Galactose-1-phosphate uridylyltransferase; nucleot 90.08
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A* Back     alignment and structure
Probab=99.70  E-value=1.7e-17  Score=147.30  Aligned_cols=100  Identities=18%  Similarity=0.171  Sum_probs=77.7

Q ss_pred             CCCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH-----hc
Q 008855          335 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK-----NQ  409 (551)
Q Consensus       335 ~~~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~-----~~  409 (551)
                      .++|+||.+..+.....||++++++++++|..|.++||+||||++|+.++.+|+++++.++..+.+.+++..+     ..
T Consensus         2 ~~~CiFC~I~~ge~~~~iv~ede~~~af~d~~P~~pgH~LViPk~Hv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~~~~~   81 (119)
T 3n1s_A            2 AEETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAED   81 (119)
T ss_dssp             CCCCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred             CCCChhhhhhcCCCcCCEEEECCCEEEEECCCCCCCCeEEEEehhHhCCHhHcCHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            3579999864332234689999999999999999999999999999999999999976666665554444433     35


Q ss_pred             CCceEEEE--ecCCCCCeeEEEEEecC
Q 008855          410 GKEAVFFE--WLSKRGTHANLQAVPIP  434 (551)
Q Consensus       410 g~~~v~~E--~~~~~~~H~HihvVPvp  434 (551)
                      |++++++.  .+++.++|+|+||||+.
T Consensus        82 g~ni~~n~g~~agq~V~HlH~Hiipr~  108 (119)
T 3n1s_A           82 GYRLIMNTNRHGGQEVYHIHMHLLGGR  108 (119)
T ss_dssp             CEEEEEEEHHHHTCCSSSCCEEEEESS
T ss_pred             CeEEEEeCCCCcCCCcCEEEEEEeCCc
Confidence            66777666  34455799999999973
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae} Back     alignment and structure
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str} Back     alignment and structure
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1 Back     alignment and structure
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp} Back     alignment and structure
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1 Back     alignment and structure
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile} Back     alignment and structure
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A* Back     alignment and structure
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi} Back     alignment and structure
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans} Back     alignment and structure
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A Back     alignment and structure
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1 Back     alignment and structure
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis} Back     alignment and structure
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0 Back     alignment and structure
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1 Back     alignment and structure
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A* Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Back     alignment and structure
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei} Back     alignment and structure
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114} Back     alignment and structure
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A* Back     alignment and structure
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A* Back     alignment and structure
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti} Back     alignment and structure
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum} Back     alignment and structure
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A* Back     alignment and structure
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A* Back     alignment and structure
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A* Back     alignment and structure
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6 Back     alignment and structure
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A* Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A Back     alignment and structure
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B* Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 551
d1guqa2171 d.13.1.2 (A:178-348) Galactose-1-phosphate uridyly 3e-05
d1rgoa234 g.66.1.1 (A:187-220) Butyrate response factor 2 (T 6e-05
d1rgoa136 g.66.1.1 (A:151-186) Butyrate response factor 2 (T 7e-05
d1m9oa_40 g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475 1e-04
d1z84a2156 d.13.1.2 (A:196-351) Galactose-1-phosphate uridyly 2e-04
d1xqua_113 d.13.1.1 (A:) Putative hydrolase {Clostridium ther 0.004
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Length = 171 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 8/102 (7%)

Query: 319 DDSQRTHRSENASANRSKECWFC--LSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVI 376
           D  Q+ + +E       K       +     +    V   E++   +P         L++
Sbjct: 6   DRLQKEYFAEQ------KSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLL 59

Query: 377 PVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEW 418
           P  HV      +     +L      L   Y N  + +  +  
Sbjct: 60  PKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSM 101
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34 Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36 Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40 Back     information, alignment and structure
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 156 Back     information, alignment and structure
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]} Length = 113 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query551
d1y23a_139 Hit {Bacillus subtilis [TaxId: 1423]} 99.72
d1kpfa_111 Protein kinase C inhibitor-1, PKCI-1 {Human (Homo 99.7
d1xqua_113 Putative hydrolase {Clostridium thermocellum [TaxI 99.68
d2oika1139 Histidine triad protein Mfla2506 {Methylobacillus 99.67
d1emsa1160 NIT-FHIT fusion protein, C-terminal domain {Nemato 99.63
d1fita_146 FHIT (fragile histidine triad protein) {Human (Hom 99.52
d1z84a2156 Galactose-1-phosphate uridylyltransferase {Thale c 99.38
d1guqa2171 Galactose-1-phosphate uridylyltransferase {Escheri 99.34
d2yvta1257 Uncharacterized protein Aq_1956 {Aquifex aeolicus 97.49
d1vlra1192 mRNA decapping enzyme DcpS C-terminal domain {Mous 97.4
d1uf3a_228 Hypothetical protein TT1561 {Thermus thermophilus 97.04
d1z84a1173 Galactose-1-phosphate uridylyltransferase {Thale c 96.5
d1guqa1176 Galactose-1-phosphate uridylyltransferase {Escheri 94.51
d3d03a1271 Glycerophosphodiesterase GpdQ {Enterobacter aeroge 93.16
d2hy1a1256 Rv0805 cyclic nucleotide phosphodiesterase {Mycoba 91.95
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 85.63
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 80.45
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 80.04
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Hit
species: Bacillus subtilis [TaxId: 1423]

Probab=99.72  E-value=1.2e-18  Score=156.53  Aligned_cols=99  Identities=18%  Similarity=0.184  Sum_probs=80.0

Q ss_pred             CCCcccCCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHH----HhcCC
Q 008855          336 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYY----KNQGK  411 (551)
Q Consensus       336 ~~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~----~~~g~  411 (551)
                      ++|+||.+..+.....+|++++++++++++.|.++||+||||++|+.++.+|+++++.++....+.+.+++    ...|+
T Consensus         1 e~CiFC~I~~~e~p~~~i~ede~~~af~d~~P~~~GH~LViPk~H~~~~~dL~~~~~~~l~~~~~~~~~~l~~~~~~~g~   80 (139)
T d1y23a_           1 ENCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGL   80 (139)
T ss_dssp             CCCHHHHHHHTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCSSGGGCCHHHHHTTTTHHHHHHHHHHHHHCCSEE
T ss_pred             CcCccCccccCCCCccEEEECCCEEEEecCCCCCCcEEEEEEecccccccccchHHHHHHHHHHHHHHHHHhhhcccCCc
Confidence            58999987533233457899999999999999999999999999999999999999999987666655544    44667


Q ss_pred             ceEEEE--ecCCCCCeeEEEEEecC
Q 008855          412 EAVFFE--WLSKRGTHANLQAVPIP  434 (551)
Q Consensus       412 ~~v~~E--~~~~~~~H~HihvVPvp  434 (551)
                      +++++.  .+++.++|+|+||||+.
T Consensus        81 ~i~~n~g~~agq~v~H~H~HviPR~  105 (139)
T d1y23a_          81 NTLNNNGEKAGQSVFHYHMHIIPRY  105 (139)
T ss_dssp             EEEEEESGGGTCCSSSCCEEEEEEC
T ss_pred             EEEeCCCccccEecCEEEEEEEccc
Confidence            777765  23445799999999984
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]} Back     information, alignment and structure
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ {Enterobacter aerogenes [TaxId: 548]} Back     information, alignment and structure
>d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide phosphodiesterase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure