Citrus Sinensis ID: 008882

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550
MSRRGGGGRRPDSRRDQPTQAPAPSFQRGGGGAAGPPGRGRQGQRGGTGRGLHSGSDAAPSSPHTASTSTSPAPSSPSVSASSPSSSSVSTLVEETEQKLALAAPAAATLPPSSSQAMRLPVRPGFGTVGRKCVVRANHFMVQLAERDIHHYDVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAFRRSTNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQFDFYLNSHAGIRGTSRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDETSAGGSTGGSRSTADRNLAIRPLPVIKDNVKDVMFYC
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccEEccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHcccccccEEEcccccccccHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEcccccccccccccEEEEEEEEccccccEEEEEEEEcccccHHHHcHHHccccccccccHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccccccccccccccccccEEEcccccccccccEEEEcccccccccccccEEEEEccccccHHHHHHHHHHHHHccccccccEEcHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccEEccccccccEcccEEEEEHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccccEEEEEEEcccccccccEEEEcccEEEEEEEEccccccccccHHHHHHEEEEEEEEccccccEEcccccccccccccccEEEEEcccccccccccccccEEEEEEccccccccHHEEEEEcccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccEccccccccccccccccccccccEEcccccccccccEEEEcccccccccccccEEEEEccccccHHHHHHHHHHHcHEEHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHcHHHcEEEEEc
msrrggggrrpdsrrdqptqapapsfqrggggaagppgrgrqgqrggtgrglhsgsdaapssphtaststspapsspsvsasspssssvsTLVEETEQKLALaapaaatlppsssqamrlpvrpgfgtvgrkCVVRANHFMVQLAERdihhydvfnprpvipisssnpnQIEKALVDVHNRTTQQGKQLQLLIIIlpdvsgsygriKRVCETELgivsqccqprqasrlnipyfenVALKINVKVGGRNTVLVDAVqkriplvtdrptiifgsdvthpqpgedsspsIAAVVASmdwpevtkyRGLVSAQAHNQEIIQDLYkstqdpfggsvhgGMIRELLIAFRRstnlkphriifyrdgvgegqFSQVLLHEMSAIRQACASleegyappvTFVVVQKrhhtrlfpaehnnrdltdrsgnilpgtvvdtqichptqfdfylnshagirgtsrpihyhvlydenrfsaddLQVLTNNLCytyarctrsvsivppaYYAHLAAFRARYyiedetsaggstggsrstadrnlairplpvikdnvkdvmfyc
msrrggggrrpdsrrdqptqapapsfqrggggaagppgrgrqGQRGGTGRGLHSGSDAAPSSPHTASTSTSPAPSSPSVSASSPSSSSVSTLVEETEQKLALAAPAAatlppsssqamrLPVRPGFGTVGRKCVVRANHFMVQLAERDIHHYDVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVKVGGRNTVLvdavqkriplvtdrptiIFGSdvthpqpgeDSSPSIAAVVASMDWPEVTKYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAFRRSTNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTrlfpaehnnrdltdrsgNILPGTVVDTQICHPTQFDFYLNSHAGIRGTSRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDEtsaggstggsrstadrnlairplpvikdnvkdVMFYC
MSrrggggrrPDSRRDQPTQAPAPSFQrggggaagppgrgrqgqrggtgrgLHSGSDaapssphtaststspapsspsvsasspssssvstLVEETEQKlalaapaaatlppsssqaMRLPVRPGFGTVGRKCVVRANHFMVQLAERDIHHYDVFNPRPVIPISSSNPNQIEKALVDVHNRTTqqgkqlqlliiilPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAFRRSTNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQFDFYLNSHAGIRGTSRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIedetsaggstggsrstadrNLAIRPLPVIKDNVKDVMFYC
*************************************************************************************************************************VRPGFGTVGRKCVVRANHFMVQLAERDIHHYDVFNPRPVIPI********EKALVDVHNRTTQQGKQLQLLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSD*************IAAVVASMDWPEVTKYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAFRRSTNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQFDFYLNSHAGIRGTSRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIE***************************************
*********************************************************************************************************************MRLPVRPGFGTVGRKCVVRANHFMVQLAERDIHHYDVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAFRRSTNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAE***********NILPGTVVDTQICHPTQFDFYLNSHAGIRGTSRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRAR******************************VIKDNVKDVMFYC
************************************************************************************************EQKLALAAPAAATLPPSSSQAMRLPVRPGFGTVGRKCVVRANHFMVQLAERDIHHYDVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSDVTH********PSIAAVVASMDWPEVTKYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAFRRSTNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQFDFYLNSHAGIRGTSRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDE************TADRNLAIRPLPVIKDNVKDVMFYC
******************************************************************************************************************SQAMRLPVRPGFGTVGRKCVVRANHFMVQLAERDIHHYDVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAFRRSTNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAE*********SGNILPGTVVDTQICHPTQFDFYLNSHAGIRGTSRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIED********************IRPLPVIKDNVKDVMFYC
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MSRRGGGGRRPDSRRDQPTQAPAPSFQRGGGGAAGPPGRGRQGQRGGTGRGLHSGSDAAPSSPHTASTSTSPAPSSPSVSASSPSSSSVSTLVEETEQKLALAAPAAATLPPSSSQAMRLPVRPGFGTVGRKCVVRANHFMVQLAERDIHHYDVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAFRRSTNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQFDFYLNSHAGIRGTSRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDETSAGGSTGGSRSTADRNLAIRPLPVIKDNVKDVMFYC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query550 2.2.26 [Sep-21-2011]
Q9SJK3997 Protein argonaute 5 OS=Ar yes no 0.712 0.393 0.742 1e-175
Q851R21058 Protein argonaute MEL1 OS yes no 0.718 0.373 0.740 1e-173
O043791048 Protein argonaute 1 OS=Ar no no 0.752 0.395 0.681 1e-168
Q9XGW1988 Protein argonaute 10 OS=A no no 0.72 0.400 0.679 1e-165
Q7XSA21118 Protein argonaute 1B OS=O no no 0.72 0.354 0.677 1e-164
Q6EU141082 Protein argonaute 1A OS=O no no 0.72 0.365 0.673 1e-162
Q6K9721011 Protein argonaute 1C OS=O no no 0.716 0.389 0.680 1e-161
Q7Y0011049 Protein argonaute 12 OS=O no no 0.712 0.373 0.657 1e-159
Q69VD5979 Protein argonaute PNH1 OS no no 0.718 0.403 0.676 1e-159
Q5Z5B21038 Protein argonaute 1D OS=O no no 0.72 0.381 0.670 1e-158
>sp|Q9SJK3|AGO5_ARATH Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2 Back     alignment and function desciption
 Score =  617 bits (1590), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 294/396 (74%), Positives = 329/396 (83%), Gaps = 4/396 (1%)

Query: 155 FNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGSYGRIKRVCETEL 214
           F P+P IP  S  P  IE+AL+D+H R       LQLLI+ILPDV+GSYG+IKR+CETEL
Sbjct: 606 FKPQPAIPFISCPPEHIEEALLDIHKR----APGLQLLIVILPDVTGSYGKIKRICETEL 661

Query: 215 GIVSQCCQPRQASRLNIPYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSD 274
           GIVSQCCQPRQ ++LN  Y ENVALKINVK GGRNTVL DA+++ IPL+TDRPTII G+D
Sbjct: 662 GIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNTVLNDAIRRNIPLITDRPTIIMGAD 721

Query: 275 VTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHG 334
           VTHPQPGEDSSPSIAAVVASMDWPE+ KYRGLVSAQAH +EIIQDLYK  QDP  G VH 
Sbjct: 722 VTHPQPGEDSSPSIAAVVASMDWPEINKYRGLVSAQAHREEIIQDLYKLVQDPQRGLVHS 781

Query: 335 GMIRELLIAFRRSTNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVT 394
           G+IRE  IAFRR+T   P RIIFYRDGV EGQFSQVLLHEM+AIR+AC SL+E Y P VT
Sbjct: 782 GLIREHFIAFRRATGQIPQRIIFYRDGVSEGQFSQVLLHEMTAIRKACNSLQENYVPRVT 841

Query: 395 FVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQFDFYLNSHAGIRGTSR 454
           FV+VQKRHHTRLFP +H NRD+TD+SGNI PGTVVDT+ICHP +FDFYLNSHAGI+GTSR
Sbjct: 842 FVIVQKRHHTRLFPEQHGNRDMTDKSGNIQPGTVVDTKICHPNEFDFYLNSHAGIQGTSR 901

Query: 455 PIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDET 514
           P HYHVL DEN F+AD LQ+LTNNLCYTYARCT+SVSIVPPAYYAHLAAFRARYY+E E 
Sbjct: 902 PAHYHVLLDENGFTADQLQMLTNNLCYTYARCTKSVSIVPPAYYAHLAAFRARYYMESEM 961

Query: 515 SAGGSTGGSRSTADRNLAIRPLPVIKDNVKDVMFYC 550
           S GGS+    ST      I  LP IKDNVK+VMFYC
Sbjct: 962 SDGGSSRSRSSTTGVGQVISQLPAIKDNVKEVMFYC 997
Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Associates with siRNAs of various sizes, from 21-24 nucleotide in length and preferentially recruits small RNAs with a 5' terminal cytosine. Probably involved in antiviral RNA silencing. Associates with siRNAs derived from cucumber mosaic virus (CMV). Targeted by the turnip yellows virus (TuYV) protein P0 (via F-box-like domain) for probable proteasome degradation and thereby inactivating AGO5 function in RNA silencing.
Arabidopsis thaliana (taxid: 3702)
>sp|Q851R2|MEL1_ORYSJ Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1 Back     alignment and function description
>sp|O04379|AGO1_ARATH Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1 Back     alignment and function description
>sp|Q9XGW1|AGO10_ARATH Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1 Back     alignment and function description
>sp|Q7XSA2|AGO1B_ORYSJ Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3 Back     alignment and function description
>sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1 Back     alignment and function description
>sp|Q6K972|AGO1C_ORYSJ Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1 Back     alignment and function description
>sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2 Back     alignment and function description
>sp|Q69VD5|PNH1_ORYSJ Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1 Back     alignment and function description
>sp|Q5Z5B2|AGO1D_ORYSJ Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query550
359479401 1038 PREDICTED: LOW QUALITY PROTEIN: protein 0.721 0.382 0.806 0.0
297734872 1032 unnamed protein product [Vitis vinifera] 0.721 0.384 0.806 0.0
224054242 904 argonaute protein group [Populus trichoc 0.712 0.433 0.790 0.0
224106886 987 argonaute protein group [Populus trichoc 0.707 0.394 0.790 0.0
255565533 987 eukaryotic translation initiation factor 0.741 0.413 0.772 0.0
297826159 1001 hypothetical protein ARALYDRAFT_481718 [ 0.712 0.391 0.755 1e-178
449520607 984 PREDICTED: LOW QUALITY PROTEIN: protein 0.709 0.396 0.763 1e-177
449443600 987 PREDICTED: protein argonaute 5-like [Cuc 0.709 0.395 0.748 1e-176
30683679 997 Argonaute family protein [Arabidopsis th 0.712 0.393 0.742 1e-174
4510428 997 Argonaute (AGO1)-like protein [Arabidops 0.712 0.393 0.742 1e-174
>gi|359479401|ref|XP_002271699.2| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 5-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/404 (80%), Positives = 359/404 (88%), Gaps = 7/404 (1%)

Query: 154  VFNPRPVIPISSSNPNQIEKALVDVHNRTT-------QQGKQLQLLIIILPDVSGSYGRI 206
            VFNP P++PI S++PNQIEK LVDVH ++        Q GKQLQLLIIILPDV+GSYG+I
Sbjct: 635  VFNPNPLLPIQSAHPNQIEKVLVDVHKQSMAKLASMGQNGKQLQLLIIILPDVTGSYGKI 694

Query: 207  KRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDR 266
            KR+CETELGIVSQCCQP QAS+LN  YFENVALKINVKVGGRNTVL DA+Q++IPLV+D 
Sbjct: 695  KRICETELGIVSQCCQPSQASKLNKQYFENVALKINVKVGGRNTVLFDAIQRKIPLVSDL 754

Query: 267  PTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHNQEIIQDLYKSTQD 326
            PTIIFG+DVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQ H +EIIQDLYK+T D
Sbjct: 755  PTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQHHREEIIQDLYKTTAD 814

Query: 327  PFGGSVHGGMIRELLIAFRRSTNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLE 386
            P  G  HGGMIRELLIAFRRST  KP RIIFYRDGV EGQFSQVLLHEM +IR+ACASLE
Sbjct: 815  PHKGVTHGGMIRELLIAFRRSTGYKPSRIIFYRDGVSEGQFSQVLLHEMDSIRKACASLE 874

Query: 387  EGYAPPVTFVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQFDFYLNSH 446
            EGY PPVTFVVVQKRHHTR FP++H +RDLTDRSGNILPGTVVDT+ICHPT+FDFYLNSH
Sbjct: 875  EGYLPPVTFVVVQKRHHTRFFPSDHRSRDLTDRSGNILPGTVVDTKICHPTEFDFYLNSH 934

Query: 447  AGIRGTSRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRA 506
            AGI+GTSRP HYHVLYDEN+F+AD LQ+LTNNLCYTYARCTRSVSIVPPAYYAHLAAFRA
Sbjct: 935  AGIQGTSRPTHYHVLYDENKFTADILQILTNNLCYTYARCTRSVSIVPPAYYAHLAAFRA 994

Query: 507  RYYIEDETSAGGSTGGSRSTADRNLAIRPLPVIKDNVKDVMFYC 550
            RYYIE +TS  GS  G RST +RNL +R LP +K+NVKDVMFYC
Sbjct: 995  RYYIEGDTSDSGSGSGDRSTRERNLEVRLLPAVKENVKDVMFYC 1038

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297734872|emb|CBI17106.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224054242|ref|XP_002298162.1| argonaute protein group [Populus trichocarpa] gi|222845420|gb|EEE82967.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224106886|ref|XP_002314317.1| argonaute protein group [Populus trichocarpa] gi|222850725|gb|EEE88272.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255565533|ref|XP_002523757.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223537061|gb|EEF38697.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297826159|ref|XP_002880962.1| hypothetical protein ARALYDRAFT_481718 [Arabidopsis lyrata subsp. lyrata] gi|297326801|gb|EFH57221.1| hypothetical protein ARALYDRAFT_481718 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449520607|ref|XP_004167325.1| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449443600|ref|XP_004139565.1| PREDICTED: protein argonaute 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30683679|ref|NP_850110.1| Argonaute family protein [Arabidopsis thaliana] gi|322510009|sp|Q9SJK3.2|AGO5_ARATH RecName: Full=Protein argonaute 5 gi|330252961|gb|AEC08055.1| Argonaute family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|4510428|gb|AAD21514.1| Argonaute (AGO1)-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query550
TAIR|locus:2057851997 AGO5 "ARGONAUTE 5" [Arabidopsi 0.712 0.393 0.704 2.8e-165
UNIPROTKB|Q851R21058 MEL1 "Protein argonaute MEL1" 0.718 0.373 0.693 2.9e-159
TAIR|locus:2170897988 AGO10 "ARGONAUTE 10" [Arabidop 0.72 0.400 0.651 1.1e-150
UNIPROTKB|Q69VD5979 PHN1 "Protein argonaute PNH1" 0.718 0.403 0.649 7.4e-150
UNIPROTKB|Q75HC21048 AGO7 "Protein argonaute 7" [Or 0.592 0.311 0.494 3.9e-89
UNIPROTKB|Q9HCK5861 EIF2C4 "Protein argonaute-4" [ 0.554 0.354 0.528 9.1e-88
UNIPROTKB|F1SV64861 EIF2C4 "Uncharacterized protei 0.554 0.354 0.528 9.1e-88
UNIPROTKB|F1P3Z1847 EIF2C4 "Protein argonaute-4" [ 0.554 0.360 0.525 3.1e-87
RGD|1304583798 Ago4 "argonaute RISC catalytic 0.554 0.382 0.528 3.9e-87
UNIPROTKB|F1LUQ5860 Eif2c4 "Protein Eif2c4" [Rattu 0.554 0.354 0.528 3.9e-87
TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1482 (526.7 bits), Expect = 2.8e-165, Sum P(2) = 2.8e-165
 Identities = 279/396 (70%), Positives = 312/396 (78%)

Query:   155 FNPRPVIPISSSNPNQIEKALVDVHNRTTXXXXXXXXXXXXXPDVSGSYGRIKRVCETEL 214
             F P+P IP  S  P  IE+AL+D+H R               PDV+GSYG+IKR+CETEL
Sbjct:   606 FKPQPAIPFISCPPEHIEEALLDIHKRAPGLQLLIVIL----PDVTGSYGKIKRICETEL 661

Query:   215 GIVSQCCQPRQASRLNIPYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSD 274
             GIVSQCCQPRQ ++LN  Y ENVALKINVK GGRNTVL DA+++ IPL+TDRPTII G+D
Sbjct:   662 GIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNTVLNDAIRRNIPLITDRPTIIMGAD 721

Query:   275 VTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHG 334
             VTHPQPGEDSSPSIAAVVASMDWPE+ KYRGLVSAQAH +EIIQDLYK  QDP  G VH 
Sbjct:   722 VTHPQPGEDSSPSIAAVVASMDWPEINKYRGLVSAQAHREEIIQDLYKLVQDPQRGLVHS 781

Query:   335 GMIRELLIAFRRSTNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVT 394
             G+IRE  IAFRR+T   P RIIFYRDGV EGQFSQVLLHEM+AIR+AC SL+E Y P VT
Sbjct:   782 GLIREHFIAFRRATGQIPQRIIFYRDGVSEGQFSQVLLHEMTAIRKACNSLQENYVPRVT 841

Query:   395 FVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQFDFYLNSHAGIRGTSR 454
             FV+VQKRHHTRLFP +H NRD+TD+SGNI PGTVVDT+ICHP +FDFYLNSHAGI+GTSR
Sbjct:   842 FVIVQKRHHTRLFPEQHGNRDMTDKSGNIQPGTVVDTKICHPNEFDFYLNSHAGIQGTSR 901

Query:   455 PIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIXXXX 514
             P HYHVL DEN F+AD LQ+LTNNLCYTYARCT+SVSIVPPAYYAHLAAFRARYY+    
Sbjct:   902 PAHYHVLLDENGFTADQLQMLTNNLCYTYARCTKSVSIVPPAYYAHLAAFRARYYMESEM 961

Query:   515 XXXXXXXXXXXXXXXNLAIRPLPVIKDNVKDVMFYC 550
                               I  LP IKDNVK+VMFYC
Sbjct:   962 SDGGSSRSRSSTTGVGQVISQLPAIKDNVKEVMFYC 997
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0048441 "petal development" evidence=RCA
GO:0048443 "stamen development" evidence=RCA
GO:0048481 "ovule development" evidence=RCA
UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q75HC2 AGO7 "Protein argonaute 7" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q9HCK5 EIF2C4 "Protein argonaute-4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SV64 EIF2C4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3Z1 EIF2C4 "Protein argonaute-4" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1304583 Ago4 "argonaute RISC catalytic component 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LUQ5 Eif2c4 "Protein Eif2c4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q851R2MEL1_ORYSJNo assigned EC number0.74070.71810.3733yesno
Q9SJK3AGO5_ARATHNo assigned EC number0.74240.71270.3931yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00022116001
SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (873 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query550
cd04657426 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain 1e-176
pfam02171296 pfam02171, Piwi, Piwi domain 1e-114
PLN03202900 PLN03202, PLN03202, protein argonaute; Provisional 1e-110
smart00950301 smart00950, Piwi, This domain is found in the prot 1e-110
cd02826393 cd02826, Piwi-like, Piwi-like: PIWI domain 1e-71
cd04658448 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P 6e-68
pfam06682317 pfam06682, DUF1183, Protein of unknown function (D 8e-04
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 0.001
PRK04537572 PRK04537, PRK04537, ATP-dependent RNA helicase Rhl 0.002
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 0.003
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information 
 Score =  503 bits (1298), Expect = e-176
 Identities = 188/355 (52%), Positives = 240/355 (67%), Gaps = 25/355 (7%)

Query: 159 PVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPD-VSGSYGRIKRVCETELGIV 217
            +    +S   ++E+    +      +G+  QL+++ILP   S  YGRIKR+ +TELGI 
Sbjct: 94  NITTAIASVEGRVEELFAKLKQ---AKGEGPQLVLVILPKKDSDIYGRIKRLADTELGIH 150

Query: 218 SQCCQPRQASRLNIP-YFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSDVT 276
           +QC   ++ ++   P YF NVALKIN+K+GG N  L        PL+T  PT++ G+DVT
Sbjct: 151 TQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEP---DIRPLLTKEPTMVLGADVT 207

Query: 277 HPQPGE-DSSPSIAAVVASMDWPEVTKYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGG 335
           HP PG+   +PSIAAVVAS+DW    +Y   V  Q+H QEII DL               
Sbjct: 208 HPSPGDPAGAPSIAAVVASVDWHL-AQYPASVRLQSHRQEIIDDL-------------ES 253

Query: 336 MIRELLIAFRRSTNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASLEEGYAPPVTF 395
           M+RELL AF+++T   P RII+YRDGV EGQF+QVL  E+ AIR+ACA L  GY P +TF
Sbjct: 254 MVRELLRAFKKATGKLPERIIYYRDGVSEGQFAQVLNEELPAIRKACAKLYPGYKPKITF 313

Query: 396 VVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQFDFYLNSHAGIRGTSRP 455
           +VVQKRHHTR FP + ++ D   ++GN+ PGTVVD  I HP +FDFYL SHAGI+GT+RP
Sbjct: 314 IVVQKRHHTRFFPTDEDDAD--GKNGNVPPGTVVDRGITHPREFDFYLCSHAGIQGTARP 371

Query: 456 IHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYI 510
            HYHVL+DE  F+AD+LQ LT NLCYTYARCTRSVSI PPAYYAHLAA RAR Y+
Sbjct: 372 THYHVLWDEIGFTADELQTLTYNLCYTYARCTRSVSIPPPAYYAHLAAARARCYL 426

Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. Length = 426
>gnl|CDD|216915 pfam02171, Piwi, Piwi domain Back     alignment and domain information
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information
>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives Back     alignment and domain information
>gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain Back     alignment and domain information
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>gnl|CDD|219133 pfam06682, DUF1183, Protein of unknown function (DUF1183) Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 550
PLN03202900 protein argonaute; Provisional 100.0
cd04657426 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut 100.0
KOG1041876 consensus Translation initiation factor 2C (eIF-2C 100.0
cd04658448 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain 100.0
cd02826393 Piwi-like Piwi-like: PIWI domain. Domain found in 100.0
PF02171302 Piwi: Piwi domain; InterPro: IPR003165 This domain 100.0
KOG1042845 consensus Germ-line stem cell division protein Hiw 100.0
cd04659404 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI 100.0
COG1431685 Argonaute homolog, implicated in RNA metabolism [T 99.43
PTZ00146293 fibrillarin; Provisional 96.51
PTZ00146293 fibrillarin; Provisional 96.32
PF13032138 DUF3893: Domain of unknown function (DUF3893) 95.21
PF12764104 Gly-rich_Ago1: Glycine-rich region of argonaut; In 94.32
KOG1596317 consensus Fibrillarin and related nucleolar RNA-bi 93.22
PRK11617224 endonuclease V; Provisional 92.47
KOG1596317 consensus Fibrillarin and related nucleolar RNA-bi 91.98
PF08459155 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; I 87.53
PLN03202 900 protein argonaute; Provisional 87.42
cd06559208 Endonuclease_V Endonuclease_V, a DNA repair enzyme 87.29
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 84.42
TIGR00194574 uvrC excinuclease ABC, C subunit. This family cons 83.71
>PLN03202 protein argonaute; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.3e-89  Score=786.94  Aligned_cols=396  Identities=42%  Similarity=0.704  Sum_probs=333.2

Q ss_pred             hHHHHHHHHhhhccccceeeccCCcccccC------CChhHHHHHHHHHHHHhhhcCCCceEEEEEeCCC-CCh-hHHHH
Q 008882          136 RANHFMVQLAERDIHHYDVFNPRPVIPISS------SNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDV-SGS-YGRIK  207 (550)
Q Consensus       136 ~an~F~~~L~~~~~~~Gm~I~~~p~v~~~~------~~~~~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~-~~~-Y~~IK  207 (550)
                      .++.|+..|.+.|..+||.|.++..+....      ...+.+++.+..+.+..   ...++|||||+|++ +.+ |+.||
T Consensus       495 ~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~qlv~vIlp~~~~~~~Y~~IK  571 (900)
T PLN03202        495 DIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKL---PGPPQFLLCILPERKNSDIYGPWK  571 (900)
T ss_pred             hHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhc---cCCCeEEEEEEcCCCCcchHHHHH
Confidence            578999999999999999997654321111      11234555555554432   24699999999974 455 99999


Q ss_pred             HHhhhhcCceeeeecccccccCChhhHHHHHHHHHHhcCCcceeecccccccCCccCCCCeEEEEEeecCCCCCCCCCCc
Q 008882          208 RVCETELGIVSQCCQPRQASRLNIPYFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSDVTHPQPGEDSSPS  287 (550)
Q Consensus       208 ~~~~~~~GI~TQ~I~~~t~~k~~~~~~~Ni~lKINaKlGG~n~~l~~~~~~~lP~~~~~~tmIIGiDVsh~~~~~~~~pS  287 (550)
                      ++||++.||+||||...   +.++|++.||+||||+||||+||.+.......+|++.+.+|||||+||+|++++....||
T Consensus       572 ~~~~~~~gV~TQcv~~~---~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~pS  648 (900)
T PLN03202        572 KKNLSEFGIVTQCIAPT---RVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPS  648 (900)
T ss_pred             HHHhhccCcccEEeCcc---ccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCCc
Confidence            99999999999999654   357899999999999999999998865434457888778999999999999887544799


Q ss_pred             EEEEEEeecCCCCcceeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHHHHhc-CCCCceEEEEecCCCchh
Q 008882          288 IAAVVASMDWPEVTKYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAFRRST-NLKPHRIIFYRDGVGEGQ  366 (550)
Q Consensus       288 i~avVaS~d~~~~~~y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~~~-~~~P~~IIiyRdGvsegq  366 (550)
                      |+|+|+|+||..+++|.+.+++|..++|+|++|+....+    ..+++||+++|..|++.+ +.+|++||||||||||||
T Consensus       649 iaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~----~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVseGQ  724 (900)
T PLN03202        649 IAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGD----KDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQ  724 (900)
T ss_pred             eEEEEeccCcccccceeeEEEecCCCceeeeehhccccc----cchHHHHHHHHHHHHHHcCCCCCceeEEEecCCCHHH
Confidence            999999999778999999999999999999987432111    235899999999999865 699999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccCccCcCCCCCCCCCCCCCCCCCeeeecccccCCCcccEEEeee
Q 008882          367 FSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQFDFYLNSH  446 (550)
Q Consensus       367 ~~~v~~~Ev~~i~~a~~~~~~~y~P~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~Sh  446 (550)
                      |.+|+++|+++|++||.++..+|+|+||||||+||||+|||+.+        ...||+||||||++||+|..|||||+||
T Consensus       725 ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~--------~~~N~~pGTvVD~~it~p~~~dFyL~Sh  796 (900)
T PLN03202        725 FNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAG--------SPDNVPPGTVVDNKICHPRNNDFYMCAH  796 (900)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccC--------CCCCCCCceEeccccccCCcceEEEecc
Confidence            99999999999999999998889999999999999999999863        3589999999999999999999999999


Q ss_pred             cCCcccccceeEEEEecCCCCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHHHHHhhhhccccCCCCCCCCCC-C
Q 008882          447 AGIRGTSRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDETSAGGSTGGSR-S  525 (550)
Q Consensus       447 ~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a~R~r~~~~~~~~~~~~~~~~~-~  525 (550)
                      .++|||+||+||+||+||+++++|+||+|||+|||+|+||+++||||+|+||||++|+|+|+|+..+..+.+++++++ .
T Consensus       797 ~~~qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r~~l~~~~~~~~~~~~~~~~  876 (900)
T PLN03202        797 AGMIGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETSSSHGGIT  876 (900)
T ss_pred             cccccCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhhhhccccCCccccccccccC
Confidence            999999999999999999999999999999999999999999999999999999999999999986543333222212 1


Q ss_pred             CccccccCCCCccccccCCCCeeeC
Q 008882          526 TADRNLAIRPLPVIKDNVKDVMFYC  550 (550)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~m~~~  550 (550)
                      +..+ .....+..||++|+++||||
T Consensus       877 ~~~~-~~~~~~~~~h~~~~~~Mfy~  900 (900)
T PLN03202        877 SAGA-VPVPELPRLHENVASSMFFC  900 (900)
T ss_pred             CCCc-cccccccccchhhcCCeeeC
Confidence            1121 12345778999999999999

>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>cd02826 Piwi-like Piwi-like: PIWI domain Back     alignment and domain information
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] Back     alignment and domain information
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00146 fibrillarin; Provisional Back     alignment and domain information
>PTZ00146 fibrillarin; Provisional Back     alignment and domain information
>PF13032 DUF3893: Domain of unknown function (DUF3893) Back     alignment and domain information
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins Back     alignment and domain information
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] Back     alignment and domain information
>PRK11617 endonuclease V; Provisional Back     alignment and domain information
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] Back     alignment and domain information
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products [] Back     alignment and domain information
>PLN03202 protein argonaute; Provisional Back     alignment and domain information
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>TIGR00194 uvrC excinuclease ABC, C subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query550
4f3t_A861 Human Argonaute-2 - Mir-20a Complex Length = 861 1e-93
4ei1_A859 Crystal Structure Of Human Argonaute2 Length = 859 1e-93
4f1n_A1046 Crystal Structure Of Kluyveromyces Polysporus Argon 1e-44
2yhb_A437 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 2e-44
4g0o_A139 Crystal Structure Of Arabidopsis Thaliana Ago5 Mid 4e-29
2yha_A388 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 2e-26
3vna_A154 Structural Insights Into Small Rna Sorting And Mrna 5e-21
4g0p_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 2e-20
3vnb_A155 Structural Insights Into Small Rna Sorting And Mrna 4e-20
4g0x_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 7e-20
3luc_A138 Crystal Structure Of Mid Domain From Hago2 Length = 5e-05
3luk_A138 Crystal Structure Of Mid Domain From Hago2 Length = 8e-05
4g0m_A150 Crystal Structure Of Arabidopsis Thaliana Ago2 Mid 3e-04
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 Back     alignment and structure 
Iteration: 1

 Score =  340 bits (873), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 178/314 (56%), Positives = 212/314 (67%), Gaps = 19/314 (6%)
Query: 197 PDVSGSYGRIKRVCETELGIVSQCCQPRQASRLNIPYFENVALKINVKVGGRNTVLVDAV 256
           P  +  Y  +KRV +T LG+ +QC Q +   R       N+ LKINVK+GG N +L+   
Sbjct: 525 PGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLP-- 582
Query: 257 QKRIPLVTDRPTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHNQEI 316
           Q R P V  +P I  G+DVTHP  G+   PSIAAVV SMD     +Y   V  Q H QEI
Sbjct: 583 QGRPP-VFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEI 640
Query: 317 IQDLYKSTQDPFGGSVHGGMIRELLIAFRRSTNLKPHRIIFYRDGVGEGQFSQVLLHEMS 376
           IQDL               M+RELLI F +ST  KP RIIFYRDGV EGQF QVL HE+ 
Sbjct: 641 IQDL-------------AAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELL 687
Query: 377 AIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHP 436
           AIR+AC  LE+ Y P +TF+VVQKRHHTRLF  + N R    +SGNI  GT VDT+I HP
Sbjct: 688 AIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNER--VGKSGNIPAGTTVDTKITHP 745
Query: 437 TQFDFYLNSHAGIRGTSRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPA 496
           T+FDFYL SHAGI+GTSRP HYHVL+D+NRFS+D+LQ+LT  LC+TY RCTRSVSI  PA
Sbjct: 746 TEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPA 805
Query: 497 YYAHLAAFRARYYI 510
           YYAHL AFRARY++
Sbjct: 806 YYAHLVAFRARYHL 819
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 Back     alignment and structure
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 Back     alignment and structure
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 Back     alignment and structure
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 Back     alignment and structure
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 Back     alignment and structure
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 Back     alignment and structure
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 Back     alignment and structure
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 Back     alignment and structure
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 Back     alignment and structure
>pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain Length = 150 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query550
2yhb_A437 QDE-2, post-transcriptional gene silencing protein 100.0
4f3t_A861 Protein argonaute-2; hydrolase/gene regulation, RN 100.0
4f1n_A1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 100.0
2yha_A388 Post-transcriptional gene silencing protein QDE-2; 100.0
1yvu_A706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 100.0
3ho1_A685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 100.0
1u04_A771 Argonaute, hypothetical protein PF0537; RNAI, sile 100.0
2w42_A427 PIWI, putative uncharacterized protein; RNAI, RISC 100.0
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 99.86
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 99.86
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 99.84
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 99.83
4f3t_A 861 Protein argonaute-2; hydrolase/gene regulation, RN 94.47
4f1n_A 1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 85.51
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Back     alignment and structure
Probab=100.00  E-value=1e-93  Score=767.31  Aligned_cols=386  Identities=31%  Similarity=0.513  Sum_probs=270.5

Q ss_pred             hHHHHHHHHhhhccccceeeccCC---cccccCCChhHHHHHHHHHHHHhhhcCCCceEEEEEeCCCCCh-hHHHHHHhh
Q 008882          136 RANHFMVQLAERDIHHYDVFNPRP---VIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS-YGRIKRVCE  211 (550)
Q Consensus       136 ~an~F~~~L~~~~~~~Gm~I~~~p---~v~~~~~~~~~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~~-Y~~IK~~~~  211 (550)
                      .++.|+..|.+.++.+||.|.++.   .+.........+  .++++...     .+++|||||+|+++.+ |..||++||
T Consensus        30 ~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~lvl~ilp~~~~~~Y~~iK~~~~  102 (437)
T 2yhb_A           30 GVPQAMTAFAEFLNRTGIPINPRFSPGMSMSVPGSEKEF--FAKVKELM-----SSHQFVVVLLPRKDVAIYNMVKRAAD  102 (437)
T ss_dssp             CHHHHHHHHHHHHHHTTCCBCSCCCCCEEEECCSSHHHH--HHHHHHHH-----HTCSEEEEEESSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCEeCCCCCcceecCCCchHHHH--HHHHhhcc-----CCCcEEEEEECCCChhHHHHHHHHHh
Confidence            478999999999999999997653   112222222222  23433221     3799999999998776 999999999


Q ss_pred             hhcCceeeeecccccccCChh--hHHHHHHHHHHhcCCcceeecccccccCCccCCCCeEEEEEeecCCC---CC--CCC
Q 008882          212 TELGIVSQCCQPRQASRLNIP--YFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSDVTHPQ---PG--EDS  284 (550)
Q Consensus       212 ~~~GI~TQ~I~~~t~~k~~~~--~~~Ni~lKINaKlGG~n~~l~~~~~~~lP~~~~~~tmIIGiDVsh~~---~~--~~~  284 (550)
                      ++.||+||||..+++.|.+++  +++||++|||+||||+||.|+..    +|++.+.+|||||+||+|++   ++  ...
T Consensus       103 ~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~~----~~~~~~~~tmiiG~DV~H~~~~~~g~~~~~  178 (437)
T 2yhb_A          103 ITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKTP----IPLLAKGKTMVVGYDVTHPTNLAAGQSPAS  178 (437)
T ss_dssp             TTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSSC----CHHHHTTCEEEEEEEECCCSCCCTTCCSTT
T ss_pred             cccCcccEEEehhHhcCcccHHHHHHHHHHHHHHHhCCcceecccc----ccccCCCCEEEEEEEEeccccccCCCcCCC
Confidence            999999999999999888888  99999999999999999999753    45565679999999999998   65  346


Q ss_pred             CCcEEEEEEeecCCCCcceeeEEEecc-CchhhhhhhhcccCCCCCCCchhHHHHHHHHHHHH---hcCCCCceEEEEec
Q 008882          285 SPSIAAVVASMDWPEVTKYRGLVSAQA-HNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAFRR---STNLKPHRIIFYRD  360 (550)
Q Consensus       285 ~pSi~avVaS~d~~~~~~y~s~~~~Q~-~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~---~~~~~P~~IIiyRd  360 (550)
                      .||++|||+|+| .++++|.+.+++|. .++|+|++|             ++||+++|+.|++   +++.+|++||||||
T Consensus       179 ~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l-------------~~~~~~~L~~~~~~~~~~~~~P~rIiiyRD  244 (437)
T 2yhb_A          179 APSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQF-------------TDKFKTRLELWRSNPANNRSLPENILIFRD  244 (437)
T ss_dssp             SCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHH-------------HHHHHHHHHHHHTCGGGTTCCCSEEEEEEE
T ss_pred             CCEEEEEEEecC-CCcCeeeeEEEEcCCcchhHHHHH-------------HHHHHHHHHHHHhhhhhcCCCCceEEEEeC
Confidence            799999999999 99999999999999 999999998             8999999999999   88999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHhhcCCC-CCCEEEEEEeecccCccCcCCCCCCCCCCCCCCCCCeeeecccccCCCcc
Q 008882          361 GVGEGQFSQVLLHEMSAIRQACASLEEGY-APPVTFVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQF  439 (550)
Q Consensus       361 Gvsegq~~~v~~~Ev~~i~~a~~~~~~~y-~P~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~p~~~  439 (550)
                      |||||||.+|+++|+++|++||.++...| +|+||||+|+||||+|||+.+..+.  .++.+|++||||||++||+|..+
T Consensus       245 GVseGqf~~V~~~El~~i~~a~~~~~~~~~~p~it~Ivv~Krh~tRff~~~~~~~--~~~~~N~~pGTvVD~~it~p~~~  322 (437)
T 2yhb_A          245 GVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTDPKHI--HFKSKSPKEGTVVDRGVTNVRYW  322 (437)
T ss_dssp             SCCTTTHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC----------------------------------------
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhhcccCCCCEEEEEEEecccceeccCCcccc--ccccCCCCCceEecccccCCCCc
Confidence            99999999999999999999999998888 8999999999999999999765421  12578999999999999999999


Q ss_pred             cEEEeeecCCcccccceeEEEEecCC------CCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHHHHHhhhhccc
Q 008882          440 DFYLNSHAGIRGTSRPIHYHVLYDEN------RFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEDE  513 (550)
Q Consensus       440 dFyL~Sh~~~qGTarPt~Y~Vl~d~~------~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a~R~r~~~~~~  513 (550)
                      ||||+||.++|||+||+||+||+||+      +++.|+||+|||+|||+|+||+++||||+|+||||++|+|||+|+...
T Consensus       323 dFyL~Sh~~~qGTarPthY~Vl~de~f~~~~~~~~~d~lq~lTy~Lc~~y~r~t~sVsipaP~yYAh~~a~R~r~~l~~~  402 (437)
T 2yhb_A          323 DFFLQAHASLQGTARSAHYTVLVDEIFRADYGNKAADTLEQLTHDMCYLFGRATKAVSICPPAYYADLVCDRARIHQKEL  402 (437)
T ss_dssp             -----------------CEEEEEESSHHHHHGGGHHHHHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHCHHH
T ss_pred             eEEEEecccccccCCceEEEEEeCCccccccCCCCHHHHHHHHHHHHHhhccccCCCCcCCHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999998      899999999999999999999999999999999999999999999764


Q ss_pred             cCCCCCCCCCCCCccccccCCCCccccccCCCCeeeC
Q 008882          514 TSAGGSTGGSRSTADRNLAIRPLPVIKDNVKDVMFYC  550 (550)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~  550 (550)
                      .++..++++.++ ..... .....++|++|+++||||
T Consensus       403 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~l~~~mfyl  437 (437)
T 2yhb_A          403 FDALDENDSVKT-DDFAR-WGNSGAVHPNLRNSMYYI  437 (437)
T ss_dssp             HHHHHHTSCCCH-HHHHH-HHHHTSCCGGGTTSCTTC
T ss_pred             ccCCCCCCccCC-CCccc-cccccccCHhhcCCceeC
Confidence            332211111110 11001 123567999999999998
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Back     alignment and structure
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Back     alignment and structure
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Back     alignment and structure
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 550
d1yvua2392 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 1e-101
d1w9ha1316 c.55.3.10 (A:93-408) Hypothetical protein AF1318 { 1e-75
d1u04a2447 c.55.3.10 (A:324-770) Argonaute homologue PF0537 { 2e-69
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

 Score =  309 bits (792), Expect = e-101
 Identities = 56/366 (15%), Positives = 115/366 (31%), Gaps = 67/366 (18%)

Query: 155 FNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSGS--------YGRI 206
              +    I +    + ++ L+ V N+     K + L+I+ L +            Y  +
Sbjct: 73  LKIKGKSLILAQTREEAKEKLIPVINKI----KDVDLVIVFLEEYPKVDPYKSFLLYDFV 128

Query: 207 KRVCETELGIVSQCCQPRQASRLNIPY-FENVALKINVKVGGRNTVLVDAVQKRIPLVTD 265
           KR    +  I SQ    R     N+ +   NVA ++  K G     L +        +  
Sbjct: 129 KREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKE--------IEG 179

Query: 266 RPTIIFGSDVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGLVSAQAHNQEIIQDLYKSTQ 325
           +     G D++       +  ++A         E+ +Y  L S  A  +++ +       
Sbjct: 180 KVDAFVGIDISRITRDGKTVNAVAFTKIFNSKGELVRYY-LTSYPAFGEKLTEK------ 232

Query: 326 DPFGGSVHGGMIRELLIAFRRSTNLKPHRIIFYRDGVGEGQFSQVLLHEMSAIRQACASL 385
                      I ++     +    K  +I+ +RDG        +   E++A ++     
Sbjct: 233 ----------AIGDVFSLLEKLGFKKGSKIVVHRDGR-------LYRDEVAAFKKYG--- 272

Query: 386 EEGYAPPVTFVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQFDFYLNS 445
            E Y   +  + + KR++ R F            +   + G                   
Sbjct: 273 -ELYGYSLELLEIIKRNNPRFFS-----------NEKFIKGYFYK----LSEDSVILATY 316

Query: 446 HAGIRGTSRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFR 505
           +    GT +PI    +Y E     + L     +L        + + +    +Y+      
Sbjct: 317 NQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKL 374

Query: 506 ARYYIE 511
               IE
Sbjct: 375 MLRGIE 380
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query550
d1yvua2392 Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax 100.0
d1w9ha1316 Hypothetical protein AF1318 {Archaeoglobus fulgidu 100.0
d1u04a2447 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=7e-61  Score=504.85  Aligned_cols=318  Identities=18%  Similarity=0.176  Sum_probs=260.8

Q ss_pred             hHHHHHHHHhhhccccceeeccCCcccccCCChhHHHHHHHHHHHHhhhcCCCceEEEEEeCCCCC-------h-hHHHH
Q 008882          136 RANHFMVQLAERDIHHYDVFNPRPVIPISSSNPNQIEKALVDVHNRTTQQGKQLQLLIIILPDVSG-------S-YGRIK  207 (550)
Q Consensus       136 ~an~F~~~L~~~~~~~Gm~I~~~p~v~~~~~~~~~ve~~L~~i~~~~~~~~~~~~lvlvIlp~~~~-------~-Y~~IK  207 (550)
                      ++.+|+++|.+.|+.+||.+...+..........+.+..|.+.++..    .++++++||+++..+       + |..||
T Consensus        54 ~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~vi~~~~~~~~~~~~~~~Y~~IK  129 (392)
T d1yvua2          54 RKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPVINKI----KDVDLVIVFLEEYPKVDPYKSFLLYDFVK  129 (392)
T ss_dssp             HHHHHHHHHHHHHHTTTCEEEEEEEEEEECSSTTHHHHHHHHHHTTT----SSCSEEEEEEC----------CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCceecCCCcCeeecCCccchHHHHHHHHhhc----cCCCEEEEEEcCCCCcccccchhHHHHHH
Confidence            56899999999999999999754433333334466677777777653    478999999987664       4 99999


Q ss_pred             HHhhhhcCceeeeecccccccCChh-hHHHHHHHHHHhcCCcceeecccccccCCccCCCCeEEEEEeecCCCCCCCCCC
Q 008882          208 RVCETELGIVSQCCQPRQASRLNIP-YFENVALKINVKVGGRNTVLVDAVQKRIPLVTDRPTIIFGSDVTHPQPGEDSSP  286 (550)
Q Consensus       208 ~~~~~~~GI~TQ~I~~~t~~k~~~~-~~~Ni~lKINaKlGG~n~~l~~~~~~~lP~~~~~~tmIIGiDVsh~~~~~~~~p  286 (550)
                      ++| +..||+||||..+++.+.+.+ ++.||++|||+||||+||.|.+.     |   ..+|||||+||+|+.++. ...
T Consensus       130 ~~~-~~~gIptQ~i~~~tl~~~~~~~~~~NIalqinaKlGGipw~l~~~-----~---~~~tmiIGiDv~h~~~~~-~~~  199 (392)
T d1yvua2         130 REL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKEI-----E---GKVDAFVGIDISRITRDG-KTV  199 (392)
T ss_dssp             HHH-HHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESCC-----T---TCCSEEEEECEEECCCSS-SCC
T ss_pred             HHH-hcCCcccEEEChhhccCCCchHHHHHHHHHHHHHhCCcceECCCC-----C---CCCeEEEEEEEEecCCCC-Ccc
Confidence            987 789999999999999876655 57899999999999999998642     2   357999999999987654 345


Q ss_pred             cEEEEEEeecCCCC-cceeeEEEeccCchhhhhhhhcccCCCCCCCchhHHHHHHHHHHHHhcCCCCceEEEEecCCCch
Q 008882          287 SIAAVVASMDWPEV-TKYRGLVSAQAHNQEIIQDLYKSTQDPFGGSVHGGMIRELLIAFRRSTNLKPHRIIFYRDGVGEG  365 (550)
Q Consensus       287 Si~avVaS~d~~~~-~~y~s~~~~Q~~~~e~i~~l~~~~~~~~~~~~~~~~~~~~L~~f~~~~~~~P~~IIiyRdGvseg  365 (550)
                      +++|++.+.| .+. ..++.....|..++|++                .+++.++|+.|+++++.+|++|||||||+.. 
T Consensus       200 ~~v~~~~~~~-~~g~~~~~~~~~~~~~~ee~~----------------~~~~~~~l~~~~~~~~~~P~rIIi~RdG~~~-  261 (392)
T d1yvua2         200 NAVAFTKIFN-SKGELVRYYLTSYPAFGEKLT----------------EKAIGDVFSLLEKLGFKKGSKIVVHRDGRLY-  261 (392)
T ss_dssp             CEEEEEEEEC-TTSCEEEEEEEEECSCTTHHH----------------HHHHHHHHHHHHHTTCCTTCEEEEEESSCCC-
T ss_pred             cEEEEEEEEc-CCCCEEEEEEEecCCccHHHH----------------HHHHHHHHHHHHHhcCCCCceEEEEeCCCCc-
Confidence            6667666666 332 34445556677777765                4678899999999999999999999999865 


Q ss_pred             hHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEEeecccCccCcCCCCCCCCCCCCCCCCCeeeecccccCCCcccEEEee
Q 008882          366 QFSQVLLHEMSAIRQACASLEEGYAPPVTFVVVQKRHHTRLFPAEHNNRDLTDRSGNILPGTVVDTQICHPTQFDFYLNS  445 (550)
Q Consensus       366 q~~~v~~~Ev~~i~~a~~~~~~~y~P~it~Ivv~Krh~~Rff~~~~~~~~~~~~~~N~~pGTvVd~~it~p~~~dFyL~S  445 (550)
                            ++|+++|++||.++    .|+|+||+|+||||+|||+.+           |+++||+++    .+...+||++|
T Consensus       262 ------~~El~~i~~a~~~~----~pki~~IvV~Krh~~Rff~~~-----------~~~~Gt~v~----~~~~~~~~~~s  316 (392)
T d1yvua2         262 ------RDEVAAFKKYGELY----GYSLELLEIIKRNNPRFFSNE-----------KFIKGYFYK----LSEDSVILATY  316 (392)
T ss_dssp             ------HHHHHHHHHHHHHH----TCEEEEEEEECSSCCCEECSC-----------SCCTTEEEE----BSSSEEEECCS
T ss_pred             ------HHHHHHHHHHHHhc----CCcEEEEEEEecCCeeecCCC-----------CCCCCCEEe----CCCCeEEEEEc
Confidence                  56999999999876    689999999999999999742           456788874    35678899999


Q ss_pred             ecCCcccccceeEEEEecCCCCCHHHHHHHHHHhhhhcCccCCCccccchhhHHHHHHHHHhhhhcc
Q 008882          446 HAGIRGTSRPIHYHVLYDENRFSADDLQVLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIED  512 (550)
Q Consensus       446 h~~~qGTarPt~Y~Vl~d~~~~~~d~lq~lt~~Lc~~y~~~~~~vslPaPl~yA~~~a~R~r~~~~~  512 (550)
                      |.+.|||++|+||+|++||+  +.|+||++||.|||+|++|++++|+|+|+||||++|+|+|.+++.
T Consensus       317 ~~~~qGT~rP~~Y~vl~d~~--~~d~l~~lt~~Lc~l~~~~t~svslPapi~YA~~lA~~~r~~~~p  381 (392)
T d1yvua2         317 NQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEP  381 (392)
T ss_dssp             CCCSTTCCCCEEEEEEECSS--CHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCSSC
T ss_pred             CCcCCCCCCCcEEEEECCCC--CHHHHHHHHHHHHhhccCcCCCCeeCHHHHHHHHHHHHHhhcCCc
Confidence            99999999999999999986  569999999999999999999999999999999999999998864
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure