Citrus Sinensis ID: 008884

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550
MAELRHSSSLGSRAGSSPMKRDDTASPLIHEQHADDDDDGRSRHLFRDRVRSIWSYFPFVSDDPRVSQQNSRISLCLALFVVVAGLISILSIVNHLNAPYLCKKDGIVLHCPRVKEAPSLWENPYSATTSWKPCAERRLGGISELPPENETNGYIFIHAEGGLNQQRIAICNAVAVAKIMNATLILPVLKQDQIWKDQTKFEDIFDVDHFIDYLKDDVRIVRDIPDWFTDKSELFSSIRRTVKNIPKYAPAQFYIDNVLPRIKEKKIMALKPFVDRLGYDNVPPEINRLRCRVNYHALKFLPEIEQMSDLLASRMKNRTGSSNPYMALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRKKEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNLVTKEELASQEELAGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHRYKSIKPDKGLMSKSFGDPYMGWASFVEDVVVTHQTRTGLPEETFPNYDLWENPLTPCMCKA
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccHHHHHHHHHHHHHHHHHccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHcEEccccccccccccccccccccccHHHHHHHccccEEEEccccHHHHHccccccccccccccccccccHHHHHcccHHHHHHccEEEEcccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccEEEEEEccccccHHHccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccccHHHHHHHHHHcccccccEEEEEEEEEccccccHHcHHHHccccHHHcccccHHHHHHHcccccccccccEEEEEcccEEEEcccccHHHHHHHHHHHcccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccc
cccEcccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcHHHHccccccccHHHHcccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccHHHHccHHHHHHHHHHHcEHHHcccHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccEEEEcccHHHHHcccccHHHHHHEEHHHHHHHHccHHHHHHHHHHHHHHHHcccccccEEEEEEEEcccEEEEEcccccccHHHHHHHHHHHHHcHHHHccccccccccHHHHHHcccccccHHHHHHHHHHcccccccEEEEEEcccccccHHHHHHHHHccccccccHcccHHHHHHccccHHHHHHHHHEEEccccEEEEcccccHHHHHHHHHHHcccccccccccHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccEcccccccccccc
maelrhssslgsragsspmkrddtaspliheqhadddddgrsrhlFRDRVRSIWsyfpfvsddprvsqqnsrISLCLALFVVVAGLISILSIVNhlnapylckkdgivlhcprvkeapslwenpysattswkpcaerrlggiselppenetngyiFIHAEGGLNQQRIAICNAVAVAKIMNATLilpvlkqdqiwkdqtkfedifdvdHFIDYLKDDVRIvrdipdwftdksELFSSIRRTvknipkyapaqfyidnvlprikekkimalkpfvdrlgydnvppeinrlrcrvnyhalkflPEIEQMSDLLASRMknrtgssnpyMALHLRFEKgmvglsfcdfvgTREEKAKMAEYRKKewprrykngSHLWQLALQKrkegrcplepgEVAVILRAMGYPKETQIYVASgqvyggqnrmaplrnmfpnlvtkEELASQEELAGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRymghryksikpdkglmsksfgdpymgwaSFVEDVVVTHqtrtglpeetfpnydlwenpltpcmcka
maelrhssslgsragsspmkrDDTASPLIheqhadddddgrsrHLFRDRVRSIWSYFPFVSDDPRVSQQNSRISLCLALFVVVAGLISILSIVNHLNAPYLCKKDGIVLHCPRVKEapslwenpysattswkpcAERRLGGISELPPENETNGYIFIHAEGGLNQQRIAICNAVAVAKIMNATLILPVLKQDQIWKDQTKFEDIFDVDHFIDYLKDDVRIVRDIpdwftdkselfSSIRRtvknipkyapaqfyidnvlprIKEKKIMALKPFVDRLGYDNVPPEINRLRCRVNYHALKFLPEIEQMSDLLASRMKNRTGSSNPYMALHLRFEKGMVGLSFCDFVGTREEKAKMAeyrkkewprrykngshLWQLALqkrkegrcplEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNLVTKEELASQEELAGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHRYKSIKPDKGLMSKSFGDPYMGWASFVEDVVVTHQTRtglpeetfpnydlwenpltpcmcka
MAElrhssslgsragssPMKRDDTASPLIHEQHADDDDDGRSRHLFRDRVRSIWSYFPFVSDDPRVSQQNSRISLCLALFVVVAGLISILSIVNHLNAPYLCKKDGIVLHCPRVKEAPSLWENPYSATTSWKPCAERRLGGISELPPENETNGYIFIHAEGGLNQQRIAICNAVAVAKIMNATLILPVLKQDQIWKDQTKFEDIFDVDHFIDYLKDDVRIVRDIPDWFTDKSELFSSIRRTVKNIPKYAPAQFYIDNVLPRIKEKKIMALKPFVDRLGYDNVPPEINRLRCRVNYHALKFLPEIEQMSDLLASRMKNRTGSSNPYMALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRKKEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNLVTKEELASQEELAGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHRYKSIKPDKGLMSKSFGDPYMGWASFVEDVVVTHQTRTGLPEETFPNYDLWENPLTPCMCKA
********************************************LFRDRVRSIWSYFPFVSDDPRVSQQNSRISLCLALFVVVAGLISILSIVNHLNAPYLCKKDGIVLHCPRVKEAPSLWENPYSATTSWKPCAERRLGGISEL***NETNGYIFIHAEGGLNQQRIAICNAVAVAKIMNATLILPVLKQDQIWKDQTKFEDIFDVDHFIDYLKDDVRIVRDIPDWFTDKSELFSSIRRTVKNIPKYAPAQFYIDNVLPRIKEKKIMALKPFVDRLGYDNVPPEINRLRCRVNYHALKFLPEIEQMSDL*************PYMALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRKKEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNLVTKEELASQEELAGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHRYKSIKPDKGLMSKSFGDPYMGWASFVEDVVVTHQTRTGLPEETFPNYDLWENPLTPCM***
***********************************************DRVRSIWSYFPFVS*******QNSRISLCLALFVVVAGLISILSIVNHLNAPYLCK************************************************NGYIFIHAEGGLNQQRIAICNAVAVAKIMNATLILPVLKQDQIWKDQTKFEDIFDVDHFIDYLKDDVRIVRDIPDWFT**SE***SIRRTVKNIPKYAPAQFYIDNVLPRIKEKKIMALKPFVDRLGYDNVPPEINRLRCRVNYHALKFLPEIEQMSDLLA**********NPYMALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRKKEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNLVTKEELASQEELAGF***VTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHRYKSIKPDKGLMSKSFGDPYMGWASFVE*********************LWENPLTPCMCKA
************************ASPLIHEQ********RSRHLFRDRVRSIWSYFPFVSDDPRVSQQNSRISLCLALFVVVAGLISILSIVNHLNAPYLCKKDGIVLHCPRVKEAPSLWENPYSATTSWKPCAERRLGGISELPPENETNGYIFIHAEGGLNQQRIAICNAVAVAKIMNATLILPVLKQDQIWKDQTKFEDIFDVDHFIDYLKDDVRIVRDIPDWFTDKSELFSSIRRTVKNIPKYAPAQFYIDNVLPRIKEKKIMALKPFVDRLGYDNVPPEINRLRCRVNYHALKFLPEIEQMSDLLASRMKNRTGSSNPYMALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRKKEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNLVTKEELASQEELAGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHRYKSIKPDKGLMSKSFGDPYMGWASFVEDVVVTHQTRTGLPEETFPNYDLWENPLTPCMCKA
********************************************LFRDRVRSIWSYFPFVSDDPRVSQQNSRISLCLALFVVVAGLISILSIVNHLNAPYLCKKDGIVLHCPRVKEAPSLWENPYSATTSWKPCAER**GGISELPPENETNGYIFIHAEGGLNQQRIAICNAVAVAKIMNATLILPVLKQDQIWKDQTKFEDIFDVDHFIDYLKDDVRIVRDIPDWFTDKSELFSSIRRTVKNIPKYAPAQFYIDNVLPRIKEKKIMALKPFVDRLGYDNVPPEINRLRCRVNYHALKFLPEIEQMSDLLASRMKNRTGSSNPYMALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRKKEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNLVTKEELASQEELAGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHRYKSIKPDKGLMSKSFGDPYMGWASFVEDVVVTHQTRTGLPEETFPNYDLWENPLTPCMCKA
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAELRHSSSLGSRAGSSPMKRDDTASPLIHEQHADDDDDGRSRHLFRDRVRSIWSYFPFVSDDPRVSQQNSRISLCLALFVVVAGLISILSIVNHLNAPYLCKKDGIVLHCPRVKEAPSLWENPYSATTSWKPCAERRLGGISELPPENETNGYIFIHAEGGLNQQRIAICNAVAVAKIMNATLILPVLKQDQIWKDQTKFEDIFDVDHFIDYLKDDVRIVRDIPDWFTDKSELFSSIRRTVKNIPKYAPAQFYIDNVLPRIKEKKIMALKPFVDRLGYDNVPPEINRLRCRVNYHALKFLPEIEQMSDLLASRMKNRTGSSNPYMALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRKKEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNLVTKEELASQEELAGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHRYKSIKPDKGLMSKSFGDPYMGWASFVEDVVVTHQTRTGLPEETFPNYDLWENPLTPCMCKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query550 2.2.26 [Sep-21-2011]
Q8W486519 Uncharacterized protein A no no 0.745 0.789 0.368 8e-73
>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1 Back     alignment and function desciption
 Score =  275 bits (702), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 160/434 (36%), Positives = 242/434 (55%), Gaps = 24/434 (5%)

Query: 120 LWENPYSATTSWKPCAERRLGGISELPPENETNGYIFIHAEGGLNQQRIAICNAVAVAKI 179
           LWE+  S    W+P +  R       PP  ETNGY+ +   GGLNQQR AICNAV  A+I
Sbjct: 62  LWESAKSG--GWRPSSAPRSDWP---PPTKETNGYLRVRCNGGLNQQRSAICNAVLAARI 116

Query: 180 MNATLILPVLKQDQIWKDQTKFEDIFDVDHFIDYLKDDVRIVRDIPDWFTDKSELFSSIR 239
           MNATL+LP L  +  W D + F+ I+DV+HFI+ LK DV+IV  IPD    K+     I+
Sbjct: 117 MNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPD--VHKNGKTKKIK 174

Query: 240 RTVKNIPKYAPAQFYIDNVLPRIKEKKIMALKPFVDRLGYDNVPPEINRLRCRVNYHALK 299
                 P+ AP ++Y+   L  ++E   + L PF  RL  +   PE  RLRCRVNYHAL+
Sbjct: 175 AFQIRPPRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALR 234

Query: 300 FLPEIEQMSDLLASRMKNRTGSSNPYMALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRK 359
           F P I ++S+ +  +++    S   +M++HLRFE  M+  + C  +   EE+  + +YRK
Sbjct: 235 FKPHIMKLSESIVDKLR----SQGHFMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYRK 290

Query: 360 KEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQN 419
           + +  +         +  ++R  G+CPL P EV +ILRAM +   T+IY+A+G+++GG+ 
Sbjct: 291 ENFADKR-------LIYNERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQ 343

Query: 420 RMAPLRNMFPNLVTKEELASQEELAGFRKHVTSLAALDFLVCLKSDVFVMTHGG--NFAK 477
            M P R +FP L     +   EEL+   + +   +A+D++VCL SD+F+ T+ G  NFA 
Sbjct: 344 FMKPFRTLFPRLDNHSSVDPSEELSATSQGLIG-SAVDYMVCLLSDIFMPTYDGPSNFAN 402

Query: 478 LIIGARRYMGHRYKSIKPDKGLMSKSFGDPYMGWASFVEDVV--VTHQTRTGLPEETFPN 535
            ++G R Y G R  +I+PD+  ++  F     G  +  E+ V  V  +T  G P +    
Sbjct: 403 NLLGHRLYYGFR-TTIRPDRKALAPIFIAREKGKRAGFEEAVRRVMLKTNFGGPHKRVSP 461

Query: 536 YDLWENPLTPCMCK 549
              + N    C C+
Sbjct: 462 ESFYTNSWPECFCQ 475

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query550
224107745545 predicted protein [Populus trichocarpa] 0.989 0.998 0.882 0.0
255578363552 conserved hypothetical protein [Ricinus 0.989 0.985 0.879 0.0
224100135545 predicted protein [Populus trichocarpa] 0.987 0.996 0.882 0.0
225424631552 PREDICTED: DUF246 domain-containing prot 0.996 0.992 0.864 0.0
449434991552 PREDICTED: DUF246 domain-containing prot 0.998 0.994 0.857 0.0
356540237552 PREDICTED: DUF246 domain-containing prot 0.994 0.990 0.863 0.0
356567568551 PREDICTED: DUF246 domain-containing prot 0.992 0.990 0.870 0.0
42565206557 O-fucosyltransferase family protein [Ara 1.0 0.987 0.867 0.0
297814862556 hypothetical protein ARALYDRAFT_484400 [ 1.0 0.989 0.868 0.0
242060566570 hypothetical protein SORBIDRAFT_04g00409 0.976 0.942 0.730 0.0
>gi|224107745|ref|XP_002314587.1| predicted protein [Populus trichocarpa] gi|222863627|gb|EEF00758.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1006 bits (2602), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/551 (88%), Positives = 507/551 (92%), Gaps = 7/551 (1%)

Query: 1   MAELRHSSSLGSRAGSSPMKRDDTASPLIHEQHADDDDDGRSRHLFRDRVRSIWSYFPFV 60
           MAELRHSSS+G+RA SSPMKRD+ ASPLIH    DDD      H  RDR RS WS   F+
Sbjct: 1   MAELRHSSSVGARASSSPMKRDEDASPLIHGTTHDDD---HRHHFSRDRDRSFWS---FL 54

Query: 61  SDDPRV-SQQNSRISLCLALFVVVAGLISILSIVNHLNAPYLCKKDGIVLHCPRVKEAPS 119
           SDDPRV S  NS+ISL L     + GLIS  SI N LNAPYLCKKDGIVLHCP V EAPS
Sbjct: 55  SDDPRVFSLLNSKISLFLVAVFAIVGLISAFSIFNRLNAPYLCKKDGIVLHCPHVNEAPS 114

Query: 120 LWENPYSATTSWKPCAERRLGGISELPPENETNGYIFIHAEGGLNQQRIAICNAVAVAKI 179
           LWENPYSATTSWKPCAERR  GIS+LPPENETNGYIFIHAEGGLNQQRIAICNAVAVAKI
Sbjct: 115 LWENPYSATTSWKPCAERRDNGISDLPPENETNGYIFIHAEGGLNQQRIAICNAVAVAKI 174

Query: 180 MNATLILPVLKQDQIWKDQTKFEDIFDVDHFIDYLKDDVRIVRDIPDWFTDKSELFSSIR 239
           MNATLILPVLKQDQIWKDQTKFEDIFDVDHFIDYLK DVRIVRDIP+WFTDKSELF+SIR
Sbjct: 175 MNATLILPVLKQDQIWKDQTKFEDIFDVDHFIDYLKYDVRIVRDIPEWFTDKSELFTSIR 234

Query: 240 RTVKNIPKYAPAQFYIDNVLPRIKEKKIMALKPFVDRLGYDNVPPEINRLRCRVNYHALK 299
           RTVKNIPKYAPAQFYIDNVLPRIKEKKIMALKPFVDRLGYDNVPPEINRLRCRVNYHALK
Sbjct: 235 RTVKNIPKYAPAQFYIDNVLPRIKEKKIMALKPFVDRLGYDNVPPEINRLRCRVNYHALK 294

Query: 300 FLPEIEQMSDLLASRMKNRTGSSNPYMALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRK 359
           FLPEIE+MSDLL SRM+NRTG SNPYMALHLRFEKGMVGLSFCDFVGTR+EKA+M EYRK
Sbjct: 295 FLPEIEEMSDLLVSRMRNRTGVSNPYMALHLRFEKGMVGLSFCDFVGTRDEKARMGEYRK 354

Query: 360 KEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQN 419
           KEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQN
Sbjct: 355 KEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQN 414

Query: 420 RMAPLRNMFPNLVTKEELASQEELAGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLI 479
           RMAPL+NMFP+LVTKEELA++EEL GFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLI
Sbjct: 415 RMAPLKNMFPSLVTKEELATKEELDGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLI 474

Query: 480 IGARRYMGHRYKSIKPDKGLMSKSFGDPYMGWASFVEDVVVTHQTRTGLPEETFPNYDLW 539
           IGARRY GH +KSIKPDKGLMSKSFGDPYMGWA+FVEDV+VTHQTRTGLPEETFPNYDLW
Sbjct: 475 IGARRYTGHLHKSIKPDKGLMSKSFGDPYMGWATFVEDVIVTHQTRTGLPEETFPNYDLW 534

Query: 540 ENPLTPCMCKA 550
           ENPLTPCMC+A
Sbjct: 535 ENPLTPCMCRA 545

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255578363|ref|XP_002530048.1| conserved hypothetical protein [Ricinus communis] gi|223530464|gb|EEF32348.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224100135|ref|XP_002311757.1| predicted protein [Populus trichocarpa] gi|222851577|gb|EEE89124.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225424631|ref|XP_002285492.1| PREDICTED: DUF246 domain-containing protein At1g04910 [Vitis vinifera] gi|296081371|emb|CBI16804.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449434991|ref|XP_004135279.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] gi|449520691|ref|XP_004167367.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356540237|ref|XP_003538596.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] Back     alignment and taxonomy information
>gi|356567568|ref|XP_003551990.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] Back     alignment and taxonomy information
>gi|42565206|ref|NP_566791.2| O-fucosyltransferase family protein [Arabidopsis thaliana] gi|9294295|dbj|BAB02197.1| unnamed protein product [Arabidopsis thaliana] gi|110741760|dbj|BAE98825.1| hypothetical protein [Arabidopsis thaliana] gi|332643629|gb|AEE77150.1| O-fucosyltransferase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297814862|ref|XP_002875314.1| hypothetical protein ARALYDRAFT_484400 [Arabidopsis lyrata subsp. lyrata] gi|297321152|gb|EFH51573.1| hypothetical protein ARALYDRAFT_484400 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|242060566|ref|XP_002451572.1| hypothetical protein SORBIDRAFT_04g004090 [Sorghum bicolor] gi|241931403|gb|EES04548.1| hypothetical protein SORBIDRAFT_04g004090 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query550
TAIR|locus:2079281557 AT3G26370 [Arabidopsis thalian 1.0 0.987 0.845 2.1e-260
TAIR|locus:2121909519 AT4G24530 [Arabidopsis thalian 0.452 0.479 0.412 8.1e-87
TAIR|locus:2049527567 AT2G01480 [Arabidopsis thalian 0.758 0.735 0.413 5.4e-86
TAIR|locus:2029984611 AT1G29200 [Arabidopsis thalian 0.381 0.343 0.412 5.1e-83
TAIR|locus:2006852562 AT1G14970 [Arabidopsis thalian 0.76 0.743 0.398 4.5e-82
TAIR|locus:2008935590 AT1G11990 [Arabidopsis thalian 0.769 0.716 0.367 3.9e-76
TAIR|locus:504956200589 AT1G38131 [Arabidopsis thalian 0.86 0.803 0.372 5e-76
TAIR|locus:2121793551 RHS17 "root hair specific 17" 0.696 0.695 0.398 2.1e-75
TAIR|locus:2130938549 AT4G16650 [Arabidopsis thalian 0.798 0.799 0.384 7.3e-75
TAIR|locus:2014666568 AT1G35510 [Arabidopsis thalian 0.738 0.714 0.386 1.5e-74
TAIR|locus:2079281 AT3G26370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2506 (887.2 bits), Expect = 2.1e-260, P = 2.1e-260
 Identities = 471/557 (84%), Positives = 500/557 (89%)

Query:     1 MAEXXXXXXXXXXXXXXPMKR---DDTASPLIHEQ--HADDDDDGRSRHLFRDRVRSIW- 54
             MAE              P++    +D++SP +H+   +  DD+DGR RH  RDR R IW 
Sbjct:     1 MAELRHSSSLGSRSSSSPLRAAGDEDSSSPHVHDHSPNGGDDEDGRPRHPSRDRDRPIWF 60

Query:    55 -SYFPFVSDDPRVSQQNSRISLCLALFVVVAGLISILSIVNHLNAPYLCKKDGIVLHCPR 113
              S FPF  DDPRVS Q ++ISL L L + +A LIS+  I+NHLNAPYLCKKDGIVL+CP 
Sbjct:    61 HSLFPFFGDDPRVSPQKNKISLLLILILAIASLISVYGIINHLNAPYLCKKDGIVLNCPH 120

Query:   114 VKEAPSLWENPYSATTSWKPCAERRLGGISELPPENETNGYIFIHAEGGLNQQRIAICNA 173
             VKE+PS WENP SATTSWKPCAERR+GGIS+LPPENETNGY+FIHAEGGLNQQRIAICNA
Sbjct:   121 VKESPSPWENPLSATTSWKPCAERRIGGISDLPPENETNGYVFIHAEGGLNQQRIAICNA 180

Query:   174 VAVAKIMNATLILPVLKQDQIWKDQTKFEDIFDVDHFIDYLKDDVRIVRDIPDWFTDKSE 233
             VAVAKIMNATLILPVLKQDQIWKD TKFEDIFDVDHFIDYLKDDVRIVRDIPDWFTDK+E
Sbjct:   181 VAVAKIMNATLILPVLKQDQIWKDTTKFEDIFDVDHFIDYLKDDVRIVRDIPDWFTDKAE 240

Query:   234 LFSSIRRTVKNIPKYAPAQFYIDNVLPRIKEKKIMALKPFVDRLGYDNVPPEINRLRCRV 293
             LFSSIRRTVKNIPKYA AQFYIDNVLPRIKEKKIMALKPFVDRLGYDNVP EINRLRCRV
Sbjct:   241 LFSSIRRTVKNIPKYAAAQFYIDNVLPRIKEKKIMALKPFVDRLGYDNVPQEINRLRCRV 300

Query:   294 NYHALKFLPEIEQMSDLLASRMKNRTGSSNPYMALHLRFEKGMVGLSFCDFVGTREEKAK 353
             NYHALKFLPEIEQM+D L SRM+NRTG+ NPYMALHLRFEKGMVGLSFCDFVGTREEK K
Sbjct:   301 NYHALKFLPEIEQMADSLVSRMRNRTGNPNPYMALHLRFEKGMVGLSFCDFVGTREEKVK 360

Query:   354 MAEYRKKEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQ 413
             MAEYR+KEWPRR+KNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQ
Sbjct:   361 MAEYRQKEWPRRFKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQ 420

Query:   414 VYGGQNRMAPLRNMFPNLVTKEELASQEELAGFRKHVTSLAALDFLVCLKSDVFVMTHGG 473
             VYGGQNRMAPLRNMFPNLVTKE+LA +EEL  FRKHVTSLAALDFLVCLKSDVFVMTHGG
Sbjct:   421 VYGGQNRMAPLRNMFPNLVTKEDLAGKEELTTFRKHVTSLAALDFLVCLKSDVFVMTHGG 480

Query:   474 NFAKLIIGARRYMGHRYKSIKPDKGLMSKSFGDPYMGWASFVEDVVVTHQTRTGLPEETF 533
             NFAKLIIGARRYMGHR KSIKPDKGLMSKSFGDPYMGWA+FVEDVVVTHQTRTGLPEETF
Sbjct:   481 NFAKLIIGARRYMGHRQKSIKPDKGLMSKSFGDPYMGWATFVEDVVVTHQTRTGLPEETF 540

Query:   534 PNYDLWENPLTPCMCKA 550
             PNYDLWENPLTPCMCKA
Sbjct:   541 PNYDLWENPLTPCMCKA 557
GO:0005794 "Golgi apparatus" evidence=ISM;IDA
GO:0006084 "acetyl-CoA metabolic process" evidence=RCA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM
TAIR|locus:2121909 AT4G24530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049527 AT2G01480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029984 AT1G29200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006852 AT1G14970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008935 AT1G11990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504956200 AT1G38131 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121793 RHS17 "root hair specific 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130938 AT4G16650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014666 AT1G35510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_X5122
hypothetical protein (546 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query550
cd11299290 cd11299, O-FucT_plant, GDP-fucose protein O-fucosy 1e-156
pfam10250315 pfam10250, O-FucT, GDP-fucose protein O-fucosyltra 1e-100
cd11296206 cd11296, O-FucT_like, GDP-fucose protein O-fucosyl 1e-13
cd11296206 cd11296, O-FucT_like, GDP-fucose protein O-fucosyl 3e-04
>gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily Back     alignment and domain information 
 Score =  446 bits (1149), Expect = e-156
 Identities = 160/336 (47%), Positives = 219/336 (65%), Gaps = 48/336 (14%)

Query: 154 YIFIHAEGGLNQQRIAICNAVAVAKIMNATLILPVLKQDQIWKDQTKFEDIFDVDHFIDY 213
           Y+ + A GGLNQQR  IC+AVAVA+++NATL+LP L ++ +W D +KF DI+DVDHFI  
Sbjct: 1   YLLVSANGGLNQQRSQICDAVAVARLLNATLVLPELDKNSVWGDSSKFGDIYDVDHFIKS 60

Query: 214 LKDDVRIVRDIPDWFTDKSELFSSIRRTVKNIPKYAPAQFYIDNVLPRIKEKKIMALKPF 273
           LKDDVR+V+ +P+    K         TVK +P  +   +Y++ VLP +K+  ++ L PF
Sbjct: 61  LKDDVRVVKKLPEELASKKPEI-----TVKRVPSRSSPSYYLEEVLPLLKKHGVIRLAPF 115

Query: 274 VDRLGYDNVPPEINRLRCRVNYHALKFLPEIEQMSDLLASRMKNRTGSSNPYMALHLRFE 333
             RL  D +PPEI RLRCRVN+HAL+F+PEIE++ D L  R++   G   P++ALHLRFE
Sbjct: 116 DSRLANDLLPPEIQRLRCRVNFHALRFVPEIEELGDKLVDRLREAGG---PFLALHLRFE 172

Query: 334 KGMVGLSFCDFVGTREEKAKMAEYRKKEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVA 393
           K M+  S C                                        G+CPL P EV 
Sbjct: 173 KDMLAFSGC----------------------------------------GKCPLTPEEVG 192

Query: 394 VILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNLVTKEELASQEELAGFRKHVTSL 453
           ++LRA+G+P+ T+IY+A+G++YGG+ R+ PLR++FPNL TKE LA+ EELA F  H + L
Sbjct: 193 LLLRALGFPRSTRIYLAAGEIYGGERRLDPLRSIFPNLYTKETLATAEELAPFSGHSSRL 252

Query: 454 AALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHR 489
           AALD++VCL+SDVFV T+GGNFAK + G RRY+GHR
Sbjct: 253 AALDYIVCLESDVFVPTYGGNFAKAVAGHRRYLGHR 288

Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290
>gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase Back     alignment and domain information
>gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins Back     alignment and domain information
>gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 550
PF10250351 O-FucT: GDP-fucose protein O-fucosyltransferase; I 100.0
KOG3849386 consensus GDP-fucose protein O-fucosyltransferase 98.02
PF05830321 NodZ: Nodulation protein Z (NodZ); InterPro: IPR00 94.85
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats Back     alignment and domain information 
Probab=100.00  E-value=4.5e-55  Score=444.13  Aligned_cols=304  Identities=36%  Similarity=0.647  Sum_probs=207.1

Q ss_pred             ecCChhhHHHHHHHHHHHHHHhCceEeeccccCCccccCCCC-----CCccccHHHHHHHhcccceeeccCCcccccccc
Q 008884          159 AEGGLNQQRIAICNAVAVAKIMNATLILPVLKQDQIWKDQTK-----FEDIFDVDHFIDYLKDDVRIVRDIPDWFTDKSE  233 (550)
Q Consensus       159 ~nGGLNqqR~~IcDaVaVAriLNATLVlP~L~~~s~WkD~S~-----F~dIFDvdhFI~sL~~dVrIVk~LP~~~~~~~~  233 (550)
                      +.||+||||.++++||++|++||+|||||.+.....|++.++     |+++||+++|++.++++|.+.+.+|..+.....
T Consensus         6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~   85 (351)
T PF10250_consen    6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR   85 (351)
T ss_dssp             -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence            789999999999999999999999999999999999999887     999999999999999999999998865543211


Q ss_pred             hh---------------h---------cccccccccCC-CCCchhhhhhcccccccc------ceeEEcccccccCCCCC
Q 008884          234 LF---------------S---------SIRRTVKNIPK-YAPAQFYIDNVLPRIKEK------KIMALKPFVDRLGYDNV  282 (550)
Q Consensus       234 ~~---------------~---------~i~~~~~~~p~-~s~~~yY~~~vlP~l~~~------~Vi~l~~f~~rLa~d~l  282 (550)
                      ..               +         ........... |+.+.+|+++++|.+.++      +|+.|.++...+..+.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  165 (351)
T PF10250_consen   86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL  165 (351)
T ss_dssp             EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred             hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence            00               0         00001112233 788889999999999886      99999999999998878


Q ss_pred             CccccccceeecccccccchHHHHHHHHHHHHHHhhcCCCCCcEEEeecccccccccccccCCCCHHHHHHHHHHHhhhc
Q 008884          283 PPEINRLRCRVNYHALKFLPEIEQMSDLLASRMKNRTGSSNPYMALHLRFEKGMVGLSFCDFVGTREEKAKMAEYRKKEW  362 (550)
Q Consensus       283 P~eiQrLRCrvnf~ALrF~~~I~~lg~kLV~RmR~~s~~~~pfiAlHLRfE~DMlAfSgC~~~g~~~E~~eL~~~R~~~W  362 (550)
                      +.++||        +|+|+++|+++|++++++|+.   .+++|||+|||+|+||  +++|.+++   ++..|+.+|..  
T Consensus       166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~---~~~~yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~~--  227 (351)
T PF10250_consen  166 DRDLQR--------YLRFSPEIRELADKFIKRLLA---GGGPYIAVHLRRGKDW--FSACEFKG---ERHLLASPRCW--  227 (351)
T ss_dssp             GGGGGG--------G--B-HHHHHHHHHHHHHH-------SSEEEEEE--SHHH--HHHHCT-T-------TTTHHHH--
T ss_pred             CccceE--------EEecCHHHHHHHHHHHHHhhc---ccCceEEEeecccCch--HhhcccCC---chHHHHHhHhh--
Confidence            899987        999999999999999999993   2589999999999999  89999955   67778777763  


Q ss_pred             cccccCCCchhhhHHhhhcCCCCCCChHHHHHHHHHhCCCCCcEEEEEeccccCcccchhhHHHhCCCcccccccCCHHH
Q 008884          363 PRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMAPLRNMFPNLVTKEELASQEE  442 (550)
Q Consensus       363 ~~k~~~~~~~~~~~~~~R~~G~CPLtPeEvgl~LrALGf~~~T~IYlAsGeiyGG~~~l~pLr~~FPnl~tKe~L~s~eE  442 (550)
                      .++..+       +...+..|.||++|++++.+++++|+.+.|.||||++++|||.+.|++|+++||++++|+++.+.+|
T Consensus       228 ~~~~~~-------~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  300 (351)
T PF10250_consen  228 GKKSIN-------PEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEE  300 (351)
T ss_dssp             -GGGTT------------HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--
T ss_pred             cccccc-------chhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHH
Confidence            111111       3457788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhccccchhhhhhhhhccccceeecCCCchHHHHhHhhhhcCCc
Q 008884          443 LAGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHR  489 (550)
Q Consensus       443 L~~f~~~ss~~AALDYiVcl~SDVFv~t~~GNfa~~V~GhR~y~G~~  489 (550)
                      +++|.+  +++|+||++||++||+||+|..++|+.+|+++|.|.|+.
T Consensus       301 ~~~~~~--~~~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~g~~  345 (351)
T PF10250_consen  301 LEPLND--DQLAMVDQEICSRSDVFIGTCGSTFSSNIARERHYRGKP  345 (351)
T ss_dssp             S-------S--HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHSSSS
T ss_pred             hhhccc--cchhHHHHHHHhcCCEEEecCcchhHHHhhcccCcCCCC
Confidence            999877  889999999999999999999889999999999999964

Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query550
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
3zy2_A362 Putative GDP-fucose protein O-fucosyltransferase; 1e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 59.1 bits (142), Expect = 2e-09
 Identities = 63/400 (15%), Positives = 113/400 (28%), Gaps = 119/400 (29%)

Query: 185 ILPVLKQDQIWKDQTKFEDIFDVDHFIDYLK-----DDVRIVRDIPDWFTDKSELFSSIR 239
           IL V +          F D FD     D  K     +++  +    D  +    LF ++ 
Sbjct: 21  ILSVFEDA--------FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72

Query: 240 RTVKNIPKYAPAQFYIDNVL--------PRIKEKKIMALKPFVDRLGYDNVPPEINRLRC 291
              + +      Q +++ VL          IK ++    +P +    Y     + +RL  
Sbjct: 73  SKQEEM-----VQKFVEEVLRINYKFLMSPIKTEQR---QPSMMTRMYIE---QRDRL-Y 120

Query: 292 RVNYHALK-FLPEIEQMSDLLASRMKNRTGSSNPYMALHLRFEKGMVGLSFCDFVGTREE 350
             N    K  +  ++    L  + ++ R       + +      G++G       G    
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELR---PAKNVLID-----GVLG------SG---- 162

Query: 351 KAKMAE--YRKKEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIY 408
           K  +A       +   +       W L L       C   P  V  +L+ + Y    QI 
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIF-W-LNL-----KNC-NSPETVLEMLQKLLY----QI- 209

Query: 409 VASGQVYGGQNRMAPLRNMFPNLVTKEELASQEELAGF---RKHVTSLAALD-------- 457
                     N  +   +     +    +  Q EL      + +   L  L         
Sbjct: 210 --------DPNWTSRSDHSSNIKLRIHSI--QAELRRLLKSKPYENCLLVLLNVQNAKAW 259

Query: 458 --FLVCLKSDVFVMTHGGNFAKLIIGARRY---MGHRYKSIKPD--KGLMSKSFGDPYMG 510
             F   L   + + T        +  A      + H   ++ PD  K L+ K        
Sbjct: 260 NAFN--LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--- 314

Query: 511 WASFVEDVVVTHQTRTGLPEETFPNYDLWENPLTPCMCKA 550
                +D          LP E      L  NP    +   
Sbjct: 315 ----PQD----------LPREV-----LTTNPRRLSIIAE 335
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* Length = 362 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query550
4ap5_A408 GDP-fucose protein O-fucosyltransferase 2; GT-B, G 99.52
3zy2_A362 Putative GDP-fucose protein O-fucosyltransferase; 99.27
2hhc_A330 NODZ, nodulation fucosyltransferase NODZ; glycosyl 97.32
2de0_X526 Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran 97.1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* Back     alignment and structure
Probab=99.52  E-value=1.4e-13  Score=143.56  Aligned_cols=307  Identities=17%  Similarity=0.253  Sum_probs=164.1

Q ss_pred             CCCceEEEee-cC-ChhhHHHHHHHHHHHHHHhCce----EeeccccCCccccCC------CCCCccccHHHHHHHhccc
Q 008884          150 ETNGYIFIHA-EG-GLNQQRIAICNAVAVAKIMNAT----LILPVLKQDQIWKDQ------TKFEDIFDVDHFIDYLKDD  217 (550)
Q Consensus       150 ~snGYl~V~~-nG-GLNqqR~~IcDaVaVAriLNAT----LVlP~L~~~s~WkD~------S~F~dIFDvdhFI~sL~~d  217 (550)
                      ..++||+-.. .| |.|+||...-.|.+.|+.||.|    ||||-...---|+-.      -.|++.||++++    +..
T Consensus        20 ~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~~   95 (408)
T 4ap5_A           20 SRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NKN   95 (408)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HTT
T ss_pred             cccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----Hhh
Confidence            5789999865 45 8999999999999999999999    999966432233322      379999999865    455


Q ss_pred             ceee------ccC-Ccccccc------cchh-hcc--ccc-cc---ccC-----C---CCCchhhhhhccccccccceeE
Q 008884          218 VRIV------RDI-PDWFTDK------SELF-SSI--RRT-VK---NIP-----K---YAPAQFYIDNVLPRIKEKKIMA  269 (550)
Q Consensus       218 VrIV------k~L-P~~~~~~------~~~~-~~i--~~~-~~---~~p-----~---~s~~~yY~~~vlP~l~~~~Vi~  269 (550)
                      |+||      +++ |......      .+.. ...  .+. ..   .-+     +   +.++.|  +..........-+.
T Consensus        96 vpVI~meeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw--~~~~v~~~~~~c~~  173 (408)
T 4ap5_A           96 IPVIEYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFW--GYEETRGLNVSCLS  173 (408)
T ss_dssp             SCEEEHHHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGG--GCTTCEEEEEEEEE
T ss_pred             CCeeEHHHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcc--cccccccCCceeEE
Confidence            6665      122 1100000      0000 000  000 00   000     0   001111  11111111111122


Q ss_pred             EcccccccCC---CCCCcc---cccc-ceeec----------ccccccchHHHHHHHHHHHHHHhhcCCCCCcEEEeecc
Q 008884          270 LKPFVDRLGY---DNVPPE---INRL-RCRVN----------YHALKFLPEIEQMSDLLASRMKNRTGSSNPYMALHLRF  332 (550)
Q Consensus       270 l~~f~~rLa~---d~lP~e---iQrL-RCrvn----------f~ALrF~~~I~~lg~kLV~RmR~~s~~~~pfiAlHLRf  332 (550)
                      +.+..+.+..   ..-+..   +.+. .+.+.          -..|+|.+.|.+.|++.++..-.     ++|+++|+|.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~r~l~~s~~l~~~a~~fi~~~L~-----~~~~~~h~r~  248 (408)
T 4ap5_A          174 VQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRHLN-----STDDADRIPF  248 (408)
T ss_dssp             ECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHHHTCCBCHHHHHHHHHHHHHHHC-----CCTTTTTCCC
T ss_pred             EeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHHHHhhhhHHHHHHHHHHHHHHhC-----cccceeeccc
Confidence            2221111110   000000   0000 00111          13689999999999998776543     4788888888


Q ss_pred             cccccccccccCCCCHHHHHHHHHHHhhhccccccCCCchhhhHHhhhcCCCCCCChHHHHHHHHHhCCCCCcEEEEEec
Q 008884          333 EKGMVGLSFCDFVGTREEKAKMAEYRKKEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASG  412 (550)
Q Consensus       333 E~DMlAfSgC~~~g~~~E~~eL~~~R~~~W~~k~~~~~~~~~~~~~~R~~G~CPLtPeEvgl~LrALGf~~~T~IYlAsG  412 (550)
                      +.|+...  |.......    -..|-..||.....          ..-....+|-.++-+..+.+.|-=-+-+.||||+-
T Consensus       249 ~~dw~~~--~~~~~~~~----~~~y~~~H~Rr~d~----------~~~~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD  312 (408)
T 4ap5_A          249 QEDWMKM--KVKLGSAL----GGPYLGVHLRRKDF----------IWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATD  312 (408)
T ss_dssp             CSSGGGC--CCCTTCBC----CEEEEEEEECCTTT----------TTTTCSSSCCHHHHHHHHHHHHHHHTCSCEEEEEC
T ss_pred             chhHhhh--hccccccc----CCCccccccccccc----------hhhhhccCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            8887653  43211100    00000012211000          00011223333333333333333234458999986


Q ss_pred             cccCcccchhhHHHhCCCcccccccCCHHHHhhhhccccchhhhhhhhhccccceeecCCCchHHHHhHhhhhcCCcc
Q 008884          413 QVYGGQNRMAPLRNMFPNLVTKEELASQEELAGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHRY  490 (550)
Q Consensus       413 eiyGG~~~l~pLr~~FPnl~tKe~L~s~eEL~~f~~~ss~~AALDYiVcl~SDVFv~t~~GNfa~~V~GhR~y~G~~~  490 (550)
                      +.   +..+.-|++.+|.++.-..  ..+++..+.  ..+.|.||-+||.+||+||+|..++|+..|.=.|.+.|+..
T Consensus       313 ~~---~~~~~~l~~~~~~~~~~~~--~~~~~~~~~--d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~  383 (408)
T 4ap5_A          313 AV---RKEYEELKKLLPEMVRFEP--TWEELELYK--DGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDP  383 (408)
T ss_dssp             CC---HHHHHHHHHHCTTEECCCC--CHHHHHHHH--HHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCG
T ss_pred             Cc---hhHHHHHHHhCCCcEEecC--cchhhhccC--cchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCC
Confidence            42   3346789999998654332  345555543  23579999999999999999999999999999999999863
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* Back     alignment and structure
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A* Back     alignment and structure
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00